BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 020777
         (321 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3K7H|B Chain B, Crystal Structure Of The E95k Mutant Of The Indian
           Hedgehog N-Terminal Signalling Domain
          Length = 187

 Score = 29.3 bits (64), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 26/119 (21%), Positives = 49/119 (41%), Gaps = 28/119 (23%)

Query: 230 ATSDDKYKDGGREKGKDYVFNDEKDKAGGRDTKQHRRDKDGSV---MRNENP-------- 278
           A S +++K+       D +F DEK+    R   Q  +D+  S+   + N+ P        
Sbjct: 57  ARSSERFKELTPNYNPDIIFKDEKNTGADRLMTQRCKDRLNSLAISVMNQWPGVKLRVTE 116

Query: 279 ---------KTYLNYDGRKVN--------NEYDYYSPLKYSNGIDQMFSDENPNSYCSI 320
                    +  L+Y+GR V+        N+Y   + L    G D ++ +   + +CS+
Sbjct: 117 GWDEDGHHSEESLHYEGRAVDITTSDRDRNKYGLLARLAVEAGFDWVYYESKAHVHCSV 175


>pdb|3RHF|A Chain A, Crystal Structure Of Polyphosphate Kinase 2 From
           Arthrobacter Aurescens Tc1
 pdb|3RHF|B Chain B, Crystal Structure Of Polyphosphate Kinase 2 From
           Arthrobacter Aurescens Tc1
 pdb|3RHF|C Chain C, Crystal Structure Of Polyphosphate Kinase 2 From
           Arthrobacter Aurescens Tc1
 pdb|3RHF|D Chain D, Crystal Structure Of Polyphosphate Kinase 2 From
           Arthrobacter Aurescens Tc1
          Length = 289

 Score = 28.5 bits (62), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%)

Query: 32  RVDNQISEEKLKRKKKIHRNDIGSKQTEEGTYVMKIKLCCDSCNQKLRKIMKI 84
           RV       +L+R+     ND  S+ TE+GT ++K+ L      QK R I ++
Sbjct: 150 RVHGWADAAELERRYAA-INDFESRLTEQGTTIVKVXLNISKDEQKKRLIARL 201


>pdb|4I6M|B Chain B, Structure Of Arp7-arp9-snf2(hsa)-rtt102 Subcomplex Of
           Swi/snf Chromatin Remodeler
          Length = 439

 Score = 27.7 bits (60), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 7/59 (11%)

Query: 74  CNQKLRKIMKIKGLETVNMD-------VQEDLVKVKGTVDITEVRSYIKDELKKDVVII 125
           CN  ++ I    GL   N+D       V E+++ V GT  I+  +  +  +L KD +II
Sbjct: 274 CNNLIKNISNRVGLTLDNIDDINKAKAVWENIIIVGGTTSISGFKEALLGQLLKDHLII 332


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.310    0.131    0.368 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,857,912
Number of Sequences: 62578
Number of extensions: 453757
Number of successful extensions: 986
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 964
Number of HSP's gapped (non-prelim): 32
length of query: 321
length of database: 14,973,337
effective HSP length: 99
effective length of query: 222
effective length of database: 8,778,115
effective search space: 1948741530
effective search space used: 1948741530
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 51 (24.3 bits)