Query 020778
Match_columns 321
No_of_seqs 157 out of 204
Neff 3.8
Searched_HMMs 46136
Date Fri Mar 29 05:05:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020778.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020778hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07890 Rrp15p: Rrp15p; Inte 100.0 2.2E-35 4.7E-40 250.4 12.8 123 129-251 1-130 (130)
2 KOG2974 Uncharacterized conser 99.9 4.9E-23 1.1E-27 190.8 5.8 167 129-299 41-228 (241)
3 KOG2974 Uncharacterized conser 96.3 0.0041 8.9E-08 59.0 3.8 104 146-251 115-234 (241)
4 PF09026 CENP-B_dimeris: Centr 77.1 1.3 2.9E-05 37.4 1.4 8 130-137 46-53 (101)
5 PF04931 DNA_pol_phi: DNA poly 64.3 7.8 0.00017 42.0 4.1 15 128-142 702-716 (784)
6 KOG4434 Molecular chaperone SE 43.7 23 0.0005 36.7 3.3 41 28-68 302-347 (520)
7 PF06524 NOA36: NOA36 protein; 32.6 36 0.00078 33.7 2.6 8 46-53 230-237 (314)
8 PF03406 Phage_fiber_2: Phage 30.8 5.8 0.00013 28.6 -2.3 14 204-217 2-15 (44)
9 PF04931 DNA_pol_phi: DNA poly 23.4 61 0.0013 35.4 2.6 14 130-143 700-713 (784)
10 PF05256 UPF0223: Uncharacteri 19.7 72 0.0016 26.5 1.8 11 209-219 19-29 (88)
No 1
>PF07890 Rrp15p: Rrp15p; InterPro: IPR012459 This family contains sequences from a number of hypothetical eukaryotic proteins of unknown function. The region featured is approximately 150 amino acids long.
Probab=100.00 E-value=2.2e-35 Score=250.42 Aligned_cols=123 Identities=44% Similarity=0.535 Sum_probs=110.5
Q ss_pred HHHHHHHHHHhcCCCCCCCCCccccchhhh--hhhhHHHHHHHhHhHHHHHHHHHHHhcCCCCCCc-ccchhhhhhHHHH
Q 020778 129 AFKMAFKSILRKSVADDALGPVLSAHKKLV--GEKLAEEEAERKVKGEAKKERHLAAEKGHVKPAN-YLDSHEKFLIGVA 205 (321)
Q Consensus 129 aFA~AmsKIL~kk~p~~~~~PILsksKk~~--~~kl~eeklE~KaKr~~k~EK~~~~ekgrvkP~~-~~~e~Er~LrkiA 205 (321)
|||+||++||++++|.+..+|||++++++. .++++++++|.++++.++.+++++.++|||+|++ ...++||+||+||
T Consensus 1 g~a~a~~kIL~~~~~~~~~~pILsk~kk~~~~~~~~~~ek~e~k~~~~~~~ekk~~~~~~rvkp~~~~~~e~Er~LrkiA 80 (130)
T PF07890_consen 1 GFADAMSKILNKKLPKDKRTPILSKSKKLAKAKKKKKEEKLERKAKRELKKEKKEWEEKGRVKPDIPTDDERERRLRKIA 80 (130)
T ss_pred ChHHHHHHHHcccCCCCCCcceeeCChhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHcCCCCCCCcccHHHHHHHHHHH
Confidence 599999999999999876669999999986 3678889999999999999999999999999988 7889999999999
Q ss_pred hhhHHHHhHHHHHHHHhhh----cCCCCchhhHHHHhhhcHHHHHHHhcC
Q 020778 206 TKGVVKLFNAVNKAQHAQK----GLNPSRSKDEKLLKKRRKETFFSELGK 251 (321)
Q Consensus 206 trGVVqLFNAV~k~Q~~~k----~~~~s~~KkeKvl~~vSK~~FLd~L~~ 251 (321)
|||||||||||++||++.. +.+...++++++++++||..|||+|+.
T Consensus 81 trGVVqLFNAV~~~Q~~~~~~~~~~~~~~~~~~~~~~~~sK~~FLd~Lk~ 130 (130)
T PF07890_consen 81 TRGVVQLFNAVRKAQKEAEKKLEEAGKLERKREKVLKSLSKESFLDMLKS 130 (130)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHhcCHHHHHHHHhC
Confidence 9999999999999999852 233456778899999999999999963
No 2
>KOG2974 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.87 E-value=4.9e-23 Score=190.78 Aligned_cols=167 Identities=22% Similarity=0.255 Sum_probs=111.0
Q ss_pred HHHHHHHHHHhcCCCCCCCCCccccchhhhh-hhhHHHHHHHhHhHHHHHHHHHHHhcCCCCC-Ccc-----cchhhhhh
Q 020778 129 AFKMAFKSILRKSVADDALGPVLSAHKKLVG-EKLAEEEAERKVKGEAKKERHLAAEKGHVKP-ANY-----LDSHEKFL 201 (321)
Q Consensus 129 aFA~AmsKIL~kk~p~~~~~PILsksKk~~~-~kl~eeklE~KaKr~~k~EK~~~~ekgrvkP-~~~-----~~e~Er~L 201 (321)
+|++|+.+.|++..|.+.+..+++.+++... ..+.++.+..+..+..+-+ +.....+.| .++ ..++||.|
T Consensus 41 g~~da~~k~~~~~~~es~k~~~~~~~kkee~~d~~~~d~~~kk~~~~~~i~---~d~~~~~~~~dvt~~~s~d~e~er~l 117 (241)
T KOG2974|consen 41 GWADASEKVFNKDDPESSKIILKALNKKEEFDDSLSSDDEIKKKVKEKRIA---DDDAKILNQADVTQTDSHDKETERNL 117 (241)
T ss_pred cccchhhhhhccCCchhhHHHHHHHhhhhhhhhhcchhhhhhhhhhhhhhH---HHhhccchhhhhhhhhhhhhhhhhHh
Confidence 4999999999999887655455555554321 1122222222222222222 222334444 332 45899999
Q ss_pred HHHHhhhHHHHhHHHHHHHHhhh------cCCCCchhhHHHHhhhcHHHHHHHhcC---CC---CCcccccCCCC-C-CC
Q 020778 202 IGVATKGVVKLFNAVNKAQHAQK------GLNPSRSKDEKLLKKRRKETFFSELGK---TS---VSTADASAKGP-N-SS 267 (321)
Q Consensus 202 rkiAtrGVVqLFNAV~k~Q~~~k------~~~~s~~KkeKvl~~vSK~~FLd~L~~---~~---~~~~~~~~K~~-~-~~ 267 (321)
++|||||||||||||+++|+.++ .+..+..++..+++.++++.|++.|+. .. .....+..++. + ..
T Consensus 118 ~~vAtKgVvqlfNAvkk~qK~~k~~~~~Kea~~~k~Rr~~~i~~~s~k~~~d~~r~~lr~~~r~~~q~~~~~kk~~a~q~ 197 (241)
T KOG2974|consen 118 RRVATKGVVQLFNAVKKDQKARKRRERLKEAMVGKVRRVVAINAESGKDRFDVKRSLLRGALRKVVQLANAVKKEVALQD 197 (241)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhHHHHHhhhhhhhHHhhhhHHHHhhhhhhhhhhhhhhhhhhhhcc
Confidence 99999999999999999999754 344566667779999999999999974 21 11122223311 1 12
Q ss_pred CCCCCCCCCcccccccccCCCCCCCCCCCCCC
Q 020778 268 GTADGEGPAWAPLRDNYMLTSSKLKDWDKMPQ 299 (321)
Q Consensus 268 ~~~~~e~~~WsVLrDDFMmg~aKmKDWDKe~d 299 (321)
....+++|+|..||++||++ .+||+||+++.
T Consensus 198 ~~~ee~~~~g~~~rn~~~~~-~kikewdKe~~ 228 (241)
T KOG2974|consen 198 DDNEEEGSGGRELRNDFEKN-QKIKEWDKESF 228 (241)
T ss_pred ccccccccchhhhhhHHhhh-hhhcccchhhc
Confidence 33457899999999999998 89999999999
No 3
>KOG2974 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.26 E-value=0.0041 Score=58.99 Aligned_cols=104 Identities=16% Similarity=0.114 Sum_probs=58.1
Q ss_pred CCCCccccchhhhhhhhHHHHHHHhHhHHHHHHHHHHHhcCC---CCCCcc---cchhhhhhHHHHhhhHHHHhHHHH-H
Q 020778 146 ALGPVLSAHKKLVGEKLAEEEAERKVKGEAKKERHLAAEKGH---VKPANY---LDSHEKFLIGVATKGVVKLFNAVN-K 218 (321)
Q Consensus 146 ~~~PILsksKk~~~~kl~eeklE~KaKr~~k~EK~~~~ekgr---vkP~~~---~~e~Er~LrkiAtrGVVqLFNAV~-k 218 (321)
+.-|+.+ +|.. .+.-..++.++|++....+.|..+.-+-| +.|... .....|.|+++|-|+|++|||||+ .
T Consensus 115 r~l~~vA-tKgV-vqlfNAvkk~qK~~k~~~~~Kea~~~k~Rr~~~i~~~s~k~~~d~~r~~lr~~~r~~~q~~~~~kk~ 192 (241)
T KOG2974|consen 115 RNLRRVA-TKGV-VQLFNAVKKDQKARKRRERLKEAMVGKVRRVVAINAESGKDRFDVKRSLLRGALRKVVQLANAVKKE 192 (241)
T ss_pred hHhHHHH-hHHH-HHHHHHHHHHHHHHhHHHHHHHhhhhhhHHHHHhhhhhhhHHhhhhHHHHhhhhhhhhhhhhhhhhh
Confidence 3335555 4433 34444555566665533333333321111 223332 246888888999999999999999 3
Q ss_pred HHHhh---hcCC-CCchhh-----HHHHhhhcHHHHHHHhcC
Q 020778 219 AQHAQ---KGLN-PSRSKD-----EKLLKKRRKETFFSELGK 251 (321)
Q Consensus 219 ~Q~~~---k~~~-~s~~Kk-----eKvl~~vSK~~FLd~L~~ 251 (321)
.|.+. .... +....+ .+.|+.++|+.||++...
T Consensus 193 ~a~q~~~~ee~~~~g~~~rn~~~~~~kikewdKe~~~d~~~~ 234 (241)
T KOG2974|consen 193 VALQDDDNEEEGSGGRELRNDFEKNQKIKEWDKESFLDLGKS 234 (241)
T ss_pred hhhccccccccccchhhhhhHHhhhhhhcccchhhccccccc
Confidence 33332 1111 111111 235799999999998864
No 4
>PF09026 CENP-B_dimeris: Centromere protein B dimerisation domain; InterPro: IPR015115 Centromere protein B (CENP-B) interacts with centromeric heterochromatin in chromosomes and binds to a specific subset of alphoid satellite DNA, called the CENP-B box. CENP-B may organise arrays of centromere satellite DNA into a higher order structure, which then directs centromere formation and kinetochore assembly in mammalian chromosomes. The CENP-B dimerisation domain is composed of two alpha-helices, which are folded into an antiparallel configuration. Dimerisation of CENP-B is mediated by this domain, in which monomers dimerise to form a symmetrical, antiparallel, four-helix bundle structure with a large hydrophobic patch in which 23 residues of one monomer form van der Waals contacts with the other monomer. This CENP-B dimer configuration may be suitable for capturing two distant CENP-B boxes during centromeric heterochromatin formation []. ; GO: 0003677 DNA binding, 0003682 chromatin binding, 0006355 regulation of transcription, DNA-dependent, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 1UFI_A.
Probab=77.05 E-value=1.3 Score=37.38 Aligned_cols=8 Identities=25% Similarity=0.277 Sum_probs=5.2
Q ss_pred HHHHHHHH
Q 020778 130 FKMAFKSI 137 (321)
Q Consensus 130 FA~AmsKI 137 (321)
|+.||+-|
T Consensus 46 fgea~~~~ 53 (101)
T PF09026_consen 46 FGEAMAYF 53 (101)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhhc
Confidence 77776654
No 5
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=64.27 E-value=7.8 Score=42.03 Aligned_cols=15 Identities=20% Similarity=0.306 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHhcCC
Q 020778 128 RAFKMAFKSILRKSV 142 (321)
Q Consensus 128 ~aFA~AmsKIL~kk~ 142 (321)
.+|..++.+.|+...
T Consensus 702 ~~~~~~l~~aL~~~~ 716 (784)
T PF04931_consen 702 EEFRSALAKALGDAD 716 (784)
T ss_pred HHHHHHHHHHhcccc
Confidence 469999999998753
No 6
>KOG4434 consensus Molecular chaperone SEC63, endoplasmic reticulum translocon component [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=43.71 E-value=23 Score=36.67 Aligned_cols=41 Identities=32% Similarity=0.434 Sum_probs=26.9
Q ss_pred cccccCCCCCC--cccc---CCHHHHHHHHHHHhhhCCCCCcccCC
Q 020778 28 KKKLKVMPGSG--ERVK---INNKMRKLFRKRARAYNSDDDEDESA 68 (321)
Q Consensus 28 ~k~~~~~~g~k--~~~k---~~~~~~kl~~k~~~~y~s~d~e~~~~ 68 (321)
+.+++|.+|++ ..++ -+....|.+.--|.+-|||+++++..
T Consensus 302 k~~kkpaq~Q~~qK~v~~~aas~at~ka~eeea~~~~sD~E~e~~n 347 (520)
T KOG4434|consen 302 KQKKKPAQGQGQQKFVKKNAASPATEKALEEEAKDKGSDSEEEETN 347 (520)
T ss_pred CcccCccccchhhhhcccccCChhhhhhhHHHhhhcCcchhhhhhc
Confidence 33444555544 3344 27788899999999999887766544
No 7
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=32.60 E-value=36 Score=33.69 Aligned_cols=8 Identities=25% Similarity=0.256 Sum_probs=3.5
Q ss_pred HHHHHHHH
Q 020778 46 KMRKLFRK 53 (321)
Q Consensus 46 ~~~kl~~k 53 (321)
+-++.-|.
T Consensus 230 R~hkyGRQ 237 (314)
T PF06524_consen 230 RSHKYGRQ 237 (314)
T ss_pred ecchhccc
Confidence 44454443
No 8
>PF03406 Phage_fiber_2: Phage tail fibre repeat; InterPro: IPR005068 This entry is represented by Bacteriophage lambda, Stf, side tail fibre-repeat-2. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This repeat is found in the tail fibres of phage, for example protein K Q37842 from SWISSPROT [] but bacterial homologues have also been identified. The repeats are about 40 residues long.
Probab=30.79 E-value=5.8 Score=28.63 Aligned_cols=14 Identities=36% Similarity=0.605 Sum_probs=12.0
Q ss_pred HHhhhHHHHhHHHH
Q 020778 204 VATKGVVKLFNAVN 217 (321)
Q Consensus 204 iAtrGVVqLFNAV~ 217 (321)
+.++|+|||-|+|.
T Consensus 2 ~~~kG~vqLs~~~~ 15 (44)
T PF03406_consen 2 TTQKGIVQLSSSTN 15 (44)
T ss_pred ccceeEEEeecccc
Confidence 46899999999984
No 9
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=23.39 E-value=61 Score=35.36 Aligned_cols=14 Identities=29% Similarity=0.470 Sum_probs=6.6
Q ss_pred HHHHHHHHHhcCCC
Q 020778 130 FKMAFKSILRKSVA 143 (321)
Q Consensus 130 FA~AmsKIL~kk~p 143 (321)
.-.++..-|.+-+.
T Consensus 700 ~d~~~~~~l~~aL~ 713 (784)
T PF04931_consen 700 VDEEFRSALAKALG 713 (784)
T ss_pred hHHHHHHHHHHHhc
Confidence 33445555554443
No 10
>PF05256 UPF0223: Uncharacterised protein family (UPF0223); InterPro: IPR007920 This family of proteins is functionally uncharacterised.; PDB: 2OY9_B.
Probab=19.75 E-value=72 Score=26.47 Aligned_cols=11 Identities=64% Similarity=0.981 Sum_probs=0.0
Q ss_pred HHHHhHHHHHH
Q 020778 209 VVKLFNAVNKA 219 (321)
Q Consensus 209 VVqLFNAV~k~ 219 (321)
||.+||+|.++
T Consensus 19 Vi~F~~~VE~A 29 (88)
T PF05256_consen 19 VINFFNAVEKA 29 (88)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Done!