Query 020778
Match_columns 321
No_of_seqs 157 out of 204
Neff 3.8
Searched_HMMs 13730
Date Mon Mar 25 08:02:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020778.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/020778hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2oy9a1 a.276.1.1 (A:6-90) Unc 16.4 29 0.0021 25.7 1.8 14 208-221 15-28 (85)
2 d1om2a_ a.23.4.1 (A:) Mitochon 9.4 57 0.0042 24.2 1.6 13 207-219 38-50 (95)
3 d2je6a2 d.101.1.1 (A:192-275) 8.5 1.1E+02 0.0083 20.5 2.8 19 201-219 63-81 (84)
4 d2uubd1 d.66.1.2 (D:2-209) Rib 7.0 2.6E+02 0.019 22.9 4.9 29 26-54 33-61 (208)
5 d1gh6a_ a.2.3.1 (A:) Large T a 6.5 94 0.0068 22.6 1.6 18 45-62 25-42 (114)
6 d1n1ea2 c.2.1.6 (A:9-197) Glyc 5.9 1E+02 0.0076 24.0 1.7 27 126-155 14-40 (189)
7 d2j01f1 c.22.1.1 (F:1-208) Rib 4.9 4.7E+02 0.034 20.6 5.3 46 12-57 58-115 (208)
8 d2zjrc1 c.22.1.1 (C:2-198) Rib 4.7 5.1E+02 0.037 20.2 5.4 45 12-56 51-107 (197)
9 d1xbla_ a.2.3.1 (A:) DnaJ chap 4.6 2.1E+02 0.016 19.0 2.5 19 44-62 17-35 (75)
10 d1hdja_ a.2.3.1 (A:) HSP40 {Hu 3.6 2.7E+02 0.02 18.4 2.3 20 44-63 17-36 (77)
No 1
>d2oy9a1 a.276.1.1 (A:6-90) Uncharacterized protein BH2638 {Bacillus halodurans [TaxId: 86665]}
Probab=16.39 E-value=29 Score=25.70 Aligned_cols=14 Identities=36% Similarity=0.624 Sum_probs=11.5
Q ss_pred hHHHHhHHHHHHHH
Q 020778 208 GVVKLFNAVNKAQH 221 (321)
Q Consensus 208 GVVqLFNAV~k~Q~ 221 (321)
-||.+||+|.++=-
T Consensus 15 ~V~~F~~~VE~aYE 28 (85)
T d2oy9a1 15 DVVHFFQAIEQAYD 28 (85)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH
Confidence 38999999998753
No 2
>d1om2a_ a.23.4.1 (A:) Mitochondrial import receptor subunit Tom20 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=9.44 E-value=57 Score=24.22 Aligned_cols=13 Identities=46% Similarity=0.526 Sum_probs=11.1
Q ss_pred hhHHHHhHHHHHH
Q 020778 207 KGVVKLFNAVNKA 219 (321)
Q Consensus 207 rGVVqLFNAV~k~ 219 (321)
.||+.|+|||.-.
T Consensus 38 ~g~~h~~nAi~Vc 50 (95)
T d1om2a_ 38 KGVDHLTNAIAVC 50 (95)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc
Confidence 5899999999854
No 3
>d2je6a2 d.101.1.1 (A:192-275) Exosome complex exonuclease 2, ECX2 {Sulfolobus solfataricus [TaxId: 2287]}
Probab=8.49 E-value=1.1e+02 Score=20.50 Aligned_cols=19 Identities=26% Similarity=0.288 Sum_probs=16.1
Q ss_pred hHHHHhhhHHHHhHHHHHH
Q 020778 201 LIGVATKGVVKLFNAVNKA 219 (321)
Q Consensus 201 LrkiAtrGVVqLFNAV~k~ 219 (321)
+..+|++++.+||++++++
T Consensus 63 ~i~~A~~~~~~l~~~l~~~ 81 (84)
T d2je6a2 63 AENTARSTAVKLLEELKKH 81 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5579999999999998864
No 4
>d2uubd1 d.66.1.2 (D:2-209) Ribosomal protein S4 {Thermus thermophilus [TaxId: 274]}
Probab=6.95 E-value=2.6e+02 Score=22.87 Aligned_cols=29 Identities=10% Similarity=0.030 Sum_probs=19.2
Q ss_pred CccccccCCCCCCccccCCHHHHHHHHHH
Q 020778 26 KGKKKLKVMPGSGERVKINNKMRKLFRKR 54 (321)
Q Consensus 26 ~~~k~~~~~~g~k~~~k~~~~~~kl~~k~ 54 (321)
.++...|-+||.+++.|++.=-..|..|-
T Consensus 33 ~kr~~~PG~hg~~r~~k~S~Yg~qL~EKQ 61 (208)
T d2uubd1 33 ERRPYPPGQHGQKRARRPSDYAVRLREKQ 61 (208)
T ss_dssp SSCCSCSSTTSSSCCCCCCHHHHHHHHHH
T ss_pred ccCCCCCCCCCCcCCCcccHHHHHHHHHH
Confidence 34445566888887778887666666553
No 5
>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]}
Probab=6.48 E-value=94 Score=22.56 Aligned_cols=18 Identities=28% Similarity=0.591 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHhhhCCCC
Q 020778 45 NKMRKLFRKRARAYNSDD 62 (321)
Q Consensus 45 ~~~~kl~~k~~~~y~s~d 62 (321)
..++++||+.|.-||-|=
T Consensus 25 ~~IKkAYrkla~k~HPDk 42 (114)
T d1gh6a_ 25 PLMRKAYLKKCKEFHPDK 42 (114)
T ss_dssp HHHHHHHHHTTTTCCTTT
T ss_pred HHHHHHHHHHHHHhcccc
Confidence 379999999999999874
No 6
>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}
Probab=5.87 E-value=1e+02 Score=24.01 Aligned_cols=27 Identities=30% Similarity=0.282 Sum_probs=18.1
Q ss_pred ccHHHHHHHHHHHhcCCCCCCCCCccccch
Q 020778 126 GSRAFKMAFKSILRKSVADDALGPVLSAHK 155 (321)
Q Consensus 126 g~~aFA~AmsKIL~kk~p~~~~~PILsksK 155 (321)
|+-+|+.||+.+|..+- ..--|..+++
T Consensus 14 GaG~wGtAlA~~La~~g---~~V~l~~r~~ 40 (189)
T d1n1ea2 14 GSGAFGTALAMVLSKKC---REVCVWHMNE 40 (189)
T ss_dssp CCSHHHHHHHHHHHTTE---EEEEEECSCH
T ss_pred CCCHHHHHHHHHHHHcC---CeEEEEEecH
Confidence 55679999999998752 1223455554
No 7
>d2j01f1 c.22.1.1 (F:1-208) Ribosomal protein L4 {Thermus thermophilus [TaxId: 274]}
Probab=4.90 E-value=4.7e+02 Score=20.55 Aligned_cols=46 Identities=17% Similarity=0.164 Sum_probs=24.9
Q ss_pred CCCcCCccccccCCCcc---ccccCCCC------CCc---cccCCHHHHHHHHHHHhh
Q 020778 12 SGPRKRKSSKKKGGKGK---KKLKVMPG------SGE---RVKINNKMRKLFRKRARA 57 (321)
Q Consensus 12 ~~~~~~~~~~k~~~~~~---k~~~~~~g------~k~---~~k~~~~~~kl~~k~~~~ 57 (321)
+|.+++++.+|-.++.. .+.|...| -+- ..|.++|++++.-+.|-.
T Consensus 58 ~g~gkK~~~QKGtGrAR~Gs~rsp~~~gGg~~~gp~~r~~~~klnkK~r~~Al~~aLs 115 (208)
T d2j01f1 58 AYSGRKIWPQKHTGRARHGDIGAPIFVGGGVVFGPKPRDYSYTLPKKVRKKGLAMAVA 115 (208)
T ss_dssp CCCCCCSSCSSSSSSCCCCCTTSTTSTTSCCSSCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_pred cCcccccCcccccccccccccccccccccceecCcchhhHHHHHHHHHHHHHHHHHHH
Confidence 46677777666554433 22222222 211 234678888887776643
No 8
>d2zjrc1 c.22.1.1 (C:2-198) Ribosomal protein L4 {Deinococcus radiodurans [TaxId: 1299]}
Probab=4.74 E-value=5.1e+02 Score=20.24 Aligned_cols=45 Identities=18% Similarity=0.254 Sum_probs=28.2
Q ss_pred CCCcCCccccccCCCcccc---ccCCCCCC------c---cccCCHHHHHHHHHHHh
Q 020778 12 SGPRKRKSSKKKGGKGKKK---LKVMPGSG------E---RVKINNKMRKLFRKRAR 56 (321)
Q Consensus 12 ~~~~~~~~~~k~~~~~~k~---~~~~~g~k------~---~~k~~~~~~kl~~k~~~ 56 (321)
+|.+++++.+|-.++.... .|...|-. - ..+.++|+++|.-+-|=
T Consensus 51 ~gsgkKp~~QKGtGrAR~Gs~rsP~~rgGg~afgp~pr~~~~~lnkK~r~lal~~aL 107 (197)
T d2zjrc1 51 SKTGRKMYGQKGTGNARHGDRSVPTFVGGGVAFGPKPRSYDYTLPRQVRQLGLAMAI 107 (197)
T ss_dssp SCCCSCCSCSSSSSSCCCSCSCSTTSTTSCCTTCCCCCCCCCCCCHHHHHHHHHHHH
T ss_pred cCCCCCcccCCCCCCCCcccccccccccceeeccccccchhhhccHHHHHHHHHHHH
Confidence 5788888877777665543 33333321 1 23568899988777664
No 9
>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]}
Probab=4.61 E-value=2.1e+02 Score=19.00 Aligned_cols=19 Identities=26% Similarity=0.597 Sum_probs=16.2
Q ss_pred CHHHHHHHHHHHhhhCCCC
Q 020778 44 NNKMRKLFRKRARAYNSDD 62 (321)
Q Consensus 44 ~~~~~kl~~k~~~~y~s~d 62 (321)
...+++.||+.++-||-|-
T Consensus 17 ~~eIk~aYr~l~~~~HPDk 35 (75)
T d1xbla_ 17 EREIRKAYKRLAMKYHPDR 35 (75)
T ss_dssp HHHHHHHHHHHHHHTCCTT
T ss_pred HHHHHHHHHHHHhhhhhhc
Confidence 4578999999999999873
No 10
>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.65 E-value=2.7e+02 Score=18.43 Aligned_cols=20 Identities=20% Similarity=0.690 Sum_probs=16.5
Q ss_pred CHHHHHHHHHHHhhhCCCCC
Q 020778 44 NNKMRKLFRKRARAYNSDDD 63 (321)
Q Consensus 44 ~~~~~kl~~k~~~~y~s~d~ 63 (321)
...+++.||+.+..||.|--
T Consensus 17 ~~eIk~ay~~l~~~~hPD~~ 36 (77)
T d1hdja_ 17 DEEIKRAYRRQALRYHPDKN 36 (77)
T ss_dssp HHHHHHHHHHHHHTTCTTTC
T ss_pred HHHHHHHHHHHHHHhccccc
Confidence 45788999999999998853
Done!