BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020779
(321 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2A2D|A Chain A, X-Ray Structure Of Human N-Acetyl Galactosamine Kinase
Complexed With Mn-Amppnp And N-Acetyl Glactosamine
pdb|2A2C|A Chain A, X-Ray Structure Of Human N-Acetyl Galactosamine Kinase
Complexed With Mg-Adp And N-Acetyl Galactosamine 1-
Phosphate
Length = 478
Score = 151 bits (381), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 99/250 (39%), Positives = 145/250 (58%), Gaps = 27/250 (10%)
Query: 34 AFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDFN 93
A VC + + + G + K E+A++ + E++IGT+ GGMDQ+IS +A+ G A+LI+F+
Sbjct: 169 ALVCCAGLVTLTVLGRNLSKVELAEICAKSERYIGTEGGGMDQSISFLAEEGTAKLIEFS 228
Query: 94 PIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAI 153
P+R TDV+LP+G FV+A+S E KA A S++N RV+ECRL A +LA ++
Sbjct: 229 PLRATDVKLPSGAVFVIANSCVEMNKA--ATSHFNIRVMECRLAAKLLAKYKSLQ----W 282
Query: 154 SKVKTLSDVEGLCVAFACKNGSS--DPVFAVKEFLRKEPYTALDIEKI----TEEKLTSI 207
KV L +V+ K G S + + ++ L EPY +I + EE T I
Sbjct: 283 DKVLRLEEVQA-------KLGISLEEMLLVTEDALHPEPYNPEEICRCLGISLEELRTQI 335
Query: 208 FANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDS 267
S ++ DVL +KL+QRA HVYSEA RV FK + E+ ++ LG+LMN S
Sbjct: 336 L--SPNTQDVL----IFKLYQRAKHVYSEAARVLQFKKICEE--APENMVQLLGELMNQS 387
Query: 268 HHSCSVLYEC 277
H SC +YEC
Sbjct: 388 HMSCRDMYEC 397
>pdb|2AJ4|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae
Galactokinase In Complex With Galactose And Mg:amppnp
pdb|2AJ4|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae
Galactokinase In Complex With Galactose And Mg:amppnp
Length = 548
Score = 97.4 bits (241), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 93/283 (32%), Positives = 140/283 (49%), Gaps = 51/283 (18%)
Query: 34 AFVCSSTVALMAAF---GVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELI 90
AF+C+ +A++ A G + K+ + ++T E ++G +GGMDQA S+ + A +
Sbjct: 193 AFICAVALAVVKANMGPGYHMSKQNLMRITVVAEHYVGVNNGGMDQAASVCGEEDHALYV 252
Query: 91 DFNP-IRTTDVQLPAGG----TFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKL 145
+F P ++ T + P +FV+A++L S K TA +NYN RVVE A VLA
Sbjct: 253 EFKPQLKATPFKFPQLKNHEISFVIANTLVVSNKFETAPTNYNLRVVEVTTAANVLAATY 312
Query: 146 G---MKPQEAISKVK-TLSDVEGLCVAFACKNGSSDP---------------VFAVKEFL 186
G + +E S K L D + V +A + S P + V+E L
Sbjct: 313 GVVLLSGKEGSSTNKGNLRDF--MNVYYARYHNISTPWNGDIESGIERLTKMLVLVEESL 370
Query: 187 --RKEPYTALDI--------EKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSE 236
+K+ ++ D+ E+ T + LT+ S VL KL+QRA HVYSE
Sbjct: 371 ANKKQGFSVDDVAQSLNCSREEFTRDYLTT----SPVRFQVL------KLYQRAKHVYSE 420
Query: 237 AKRV-HAFK-DTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYEC 277
+ RV A K T +S ++ED K+ G LMN+S SC LYEC
Sbjct: 421 SLRVLKAVKLMTTASFTADEDFFKQFGALMNESQASCDKLYEC 463
>pdb|3V5R|A Chain A, Crystal Structure Of The Unliganded Form Of Gal3p
pdb|3V5R|B Chain B, Crystal Structure Of The Unliganded Form Of Gal3p
Length = 505
Score = 94.7 bits (234), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 84/282 (29%), Positives = 133/282 (47%), Gaps = 47/282 (16%)
Query: 33 TAFVCSSTVALMAAF---GVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAEL 89
+AF C++ +A + A ++ KK++ ++T E ++G +GGMDQA S+ + A
Sbjct: 149 SAFTCAAALATIRANMGKNFDISKKDLTRITAVAEHYVGVNNGGMDQATSVYGEEDHALY 208
Query: 90 IDFNP-IRTTDVQLPAGG----TFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIK 144
++F P ++ T + P +FV+A++L +S K TA +NYN RV+E + A LA +
Sbjct: 209 VEFRPKLKATPFKFPQLKNHEISFVIANTLVKSNKFETAPTNYNLRVIEVTVAANALATR 268
Query: 145 LGMK-PQEAISKVKTLSDVEGLCVAFACK--------NGS--------------SDPVFA 181
+ P + ++ A+ + NG + F+
Sbjct: 269 YSVALPSHKDNSNSERGNLRDFMDAYYARYENQAQPWNGDIGTGIERLLKMLQLVEESFS 328
Query: 182 VKE--FLRKEPYTALDI--EKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEA 237
K+ F E TAL+ E+ T + LT+ VL KL+QRA HVYSE+
Sbjct: 329 RKKSGFTVHEASTALNCSREEFTRDYLTTF----PVRFQVL------KLYQRAKHVYSES 378
Query: 238 KRV-HAFKDTVSSNL-SEEDKLKKLGDLMNDSHHSCSVLYEC 277
RV A K S+ ++ED G LMN+S SC LYEC
Sbjct: 379 LRVLKALKMMTSATFHTDEDFFTDFGRLMNESQASCDKLYEC 420
>pdb|3V2U|C Chain C, Crystal Structure Of The Yeast Gal Regulon Complex Of The
Repressor, Gal80p, And The Transducer, Gal3p, With
Galactose And Atp
pdb|3V2U|D Chain D, Crystal Structure Of The Yeast Gal Regulon Complex Of The
Repressor, Gal80p, And The Transducer, Gal3p, With
Galactose And Atp
Length = 520
Score = 94.4 bits (233), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 84/282 (29%), Positives = 133/282 (47%), Gaps = 47/282 (16%)
Query: 33 TAFVCSSTVALMAAF---GVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAEL 89
+AF C++ +A + A ++ KK++ ++T E ++G +GGMDQA S+ + A
Sbjct: 164 SAFTCAAALATIRANMGKNFDISKKDLTRITAVAEHYVGVNNGGMDQATSVYGEEDHALY 223
Query: 90 IDFNP-IRTTDVQLPAGG----TFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIK 144
++F P ++ T + P +FV+A++L +S K TA +NYN RV+E + A LA +
Sbjct: 224 VEFRPKLKATPFKFPQLKNHEISFVIANTLVKSNKFETAPTNYNLRVIEVTVAANALATR 283
Query: 145 LGMK-PQEAISKVKTLSDVEGLCVAFACK--------NGS--------------SDPVFA 181
+ P + ++ A+ + NG + F+
Sbjct: 284 YSVALPSHKDNSNSERGNLRDFMDAYYARYENQAQPWNGDIGTGIERLLKMLQLVEESFS 343
Query: 182 VKE--FLRKEPYTALDI--EKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEA 237
K+ F E TAL+ E+ T + LT+ VL KL+QRA HVYSE+
Sbjct: 344 RKKSGFTVHEASTALNCSREEFTRDYLTTF----PVRFQVL------KLYQRAKHVYSES 393
Query: 238 KRV-HAFKDTVSSNL-SEEDKLKKLGDLMNDSHHSCSVLYEC 277
RV A K S+ ++ED G LMN+S SC LYEC
Sbjct: 394 LRVLKALKMMTSATFHTDEDFFTDFGRLMNESQASCDKLYEC 435
>pdb|4F99|A Chain A, Human Cdc7 Kinase In Complex With Dbf4 And Nucleotide
pdb|4F9A|A Chain A, Human Cdc7 Kinase In Complex With Dbf4 And Nucleotide
pdb|4F9A|C Chain C, Human Cdc7 Kinase In Complex With Dbf4 And Nucleotide
pdb|4F9B|A Chain A, Human Cdc7 Kinase In Complex With Dbf4 And Pha767491
pdb|4F9B|C Chain C, Human Cdc7 Kinase In Complex With Dbf4 And Pha767491
pdb|4F9C|A Chain A, Human Cdc7 Kinase In Complex With Dbf4 And Xl413
Length = 361
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 35/160 (21%), Positives = 70/160 (43%), Gaps = 29/160 (18%)
Query: 114 LAESLKAITAASNYNNRVVECRLTAIVLAI-KLGMKPQEAIS---------KVKTLSDVE 163
L E++ ++ +++ E +++ LA +L + P+E I+ ++ ++++
Sbjct: 12 LYEAVPQLSNVFKIEDKIGEGTFSSVYLATAQLQVGPEEKIALKHLIPTSHPIRIAAELQ 71
Query: 164 GLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQ 223
L VA G D V VK RK + + + + E S LD+LN+
Sbjct: 72 CLTVA-----GGQDNVMGVKYCFRKNDHVVIAMPYLEHE----------SFLDILNSLSF 116
Query: 224 YKLHQRAAHVYSEAKRVHAF----KDTVSSNLSEEDKLKK 259
++ + +++ KR+H F +D SN +LKK
Sbjct: 117 QEVREYMLNLFKALKRIHQFGIVHRDVKPSNFLYNRRLKK 156
>pdb|4HTE|A Chain A, Crystal Structure Of The C-terminal Domain Of Nicking
Enzyme From Staphylococcus Aureus
Length = 353
Score = 31.2 bits (69), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 29/56 (51%)
Query: 208 FANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDL 263
+ N S S + N AK K++ + Y E +R++ K S +ED+L K+ D+
Sbjct: 19 YXNKSDSTTLKNXAKDLKIYVTPINXYKENERLYDLKQKTSLITDDEDRLNKIEDI 74
>pdb|1WUU|A Chain A, Crystal Structure Of Human Galactokinase Complexed With
Mgamppnp And Galactose
pdb|1WUU|B Chain B, Crystal Structure Of Human Galactokinase Complexed With
Mgamppnp And Galactose
pdb|1WUU|C Chain C, Crystal Structure Of Human Galactokinase Complexed With
Mgamppnp And Galactose
pdb|1WUU|D Chain D, Crystal Structure Of Human Galactokinase Complexed With
Mgamppnp And Galactose
Length = 399
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 37/86 (43%), Gaps = 10/86 (11%)
Query: 63 CEQ----FIGTQSGGMDQAISIMAKSGFAELIDFNPIRTTDVQL--PAGGTFVVAHSLAE 116
C+Q F G G DQ IS+ + G A LID + T+ V L P + ++
Sbjct: 177 CQQAEHSFAGXPCGIXDQFISLXGQKGHALLIDCRSLETSLVPLSDPKLAVLITNSNVRH 236
Query: 117 SLKAITAASNYNNRVVECRLTAIVLA 142
SL A+S Y R +C A L
Sbjct: 237 SL----ASSEYPVRRRQCEEVARALG 258
>pdb|3TCM|A Chain A, Crystal Structure Of Alanine Aminotransferase From Hordeum
Vulgare
pdb|3TCM|B Chain B, Crystal Structure Of Alanine Aminotransferase From Hordeum
Vulgare
Length = 500
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 7/66 (10%)
Query: 199 ITEEKLTSIFANSSSSLDVLNAAKQY--KLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDK 256
+ E++ ++F S D ++ AKQ + RA YS ++ +H +D ++S ++ D
Sbjct: 98 LQREEIKTLF-----SADSISRAKQILAMIPGRATGAYSHSQGIHGLRDAIASGIASRDG 152
Query: 257 LKKLGD 262
D
Sbjct: 153 FPANAD 158
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.132 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,602,756
Number of Sequences: 62578
Number of extensions: 265027
Number of successful extensions: 804
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 788
Number of HSP's gapped (non-prelim): 14
length of query: 321
length of database: 14,973,337
effective HSP length: 99
effective length of query: 222
effective length of database: 8,778,115
effective search space: 1948741530
effective search space used: 1948741530
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)