Query 020779
Match_columns 321
No_of_seqs 211 out of 1580
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 05:05:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020779.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020779hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0153 GalK Galactokinase [Ca 100.0 1.8E-58 4E-63 443.3 18.9 229 1-294 99-333 (390)
2 PLN02521 galactokinase 100.0 2.3E-56 4.9E-61 449.0 25.6 286 13-299 148-434 (497)
3 PLN02865 galactokinase 100.0 5E-52 1.1E-56 409.9 19.6 229 2-291 114-357 (423)
4 PTZ00290 galactokinase; Provis 100.0 2.3E-51 5E-56 409.1 18.5 242 12-299 132-405 (468)
5 PRK05322 galactokinase; Provis 100.0 1.4E-45 3E-50 361.9 19.4 215 13-291 111-328 (387)
6 PRK05101 galactokinase; Provis 100.0 2.9E-45 6.3E-50 359.0 19.6 213 12-293 110-324 (382)
7 KOG0631 Galactokinase [Carbohy 100.0 3.5E-45 7.5E-50 357.2 11.5 289 13-305 141-438 (489)
8 TIGR00131 gal_kin galactokinas 100.0 5.3E-44 1.1E-48 350.4 17.9 224 13-299 109-335 (386)
9 PRK00555 galactokinase; Provis 100.0 3.2E-43 6.9E-48 342.5 18.5 228 2-299 76-311 (363)
10 PRK03817 galactokinase; Provis 100.0 1.3E-35 2.9E-40 287.5 22.3 214 12-299 84-299 (351)
11 TIGR00549 mevalon_kin mevalona 99.9 2.6E-22 5.5E-27 187.4 16.9 176 13-291 77-254 (273)
12 PTZ00298 mevalonate kinase; Pr 99.9 1E-20 2.2E-25 182.1 19.2 183 13-298 93-279 (328)
13 PLN02677 mevalonate kinase 99.8 2.6E-19 5.6E-24 175.8 18.4 99 12-116 127-240 (387)
14 TIGR01220 Pmev_kin_Gr_pos phos 99.8 5.9E-19 1.3E-23 172.0 19.6 180 11-291 97-310 (358)
15 COG1577 ERG12 Mevalonate kinas 99.8 2.3E-18 5.1E-23 163.9 20.9 101 11-116 80-181 (307)
16 PRK03926 mevalonate kinase; Pr 99.8 4E-18 8.7E-23 161.7 18.1 96 12-116 73-169 (302)
17 PRK13412 fkp bifunctional fuco 99.8 5E-18 1.1E-22 180.9 17.9 101 13-116 725-836 (974)
18 COG2605 Predicted kinase relat 99.6 9.8E-15 2.1E-19 136.2 16.3 99 15-116 90-198 (333)
19 KOG1511 Mevalonate kinase MVK/ 99.6 4.4E-14 9.6E-19 134.5 17.5 98 15-118 132-242 (397)
20 PF00288 GHMP_kinases_N: GHMP 99.6 4.8E-15 1E-19 110.5 6.0 66 16-82 1-66 (67)
21 PLN02451 homoserine kinase 99.5 3.8E-13 8.2E-18 131.8 19.0 99 12-115 132-234 (370)
22 TIGR01920 Shik_kin_archae shik 99.4 4.6E-12 9.9E-17 118.6 13.0 99 13-115 63-164 (261)
23 PRK01212 homoserine kinase; Pr 99.3 2.4E-11 5.1E-16 115.4 15.2 93 13-115 80-174 (301)
24 PRK01123 shikimate kinase; Pro 99.3 1.3E-11 2.8E-16 116.6 10.4 98 13-115 74-174 (282)
25 PRK02534 4-diphosphocytidyl-2- 99.2 3.3E-10 7.2E-15 108.4 14.1 91 13-115 85-176 (312)
26 PRK03188 4-diphosphocytidyl-2- 99.1 9.4E-10 2E-14 104.6 15.0 90 13-114 82-171 (300)
27 PRK00128 ipk 4-diphosphocytidy 99.1 2E-10 4.4E-15 108.3 10.3 91 13-115 83-173 (286)
28 TIGR00191 thrB homoserine kina 99.1 2.3E-10 5.1E-15 109.0 10.5 94 13-116 79-175 (302)
29 PRK14611 4-diphosphocytidyl-2- 99.1 3.8E-10 8.2E-15 106.3 11.5 92 13-116 79-170 (275)
30 TIGR01219 Pmev_kin_ERG8 phosph 99.1 7.2E-10 1.6E-14 111.1 12.9 104 12-119 111-284 (454)
31 COG0083 ThrB Homoserine kinase 99.1 1.9E-09 4.2E-14 102.4 12.9 93 14-116 77-171 (299)
32 TIGR00154 ispE 4-diphosphocyti 99.0 2.8E-09 6E-14 101.5 11.7 92 12-115 84-175 (293)
33 PRK14608 4-diphosphocytidyl-2- 99.0 2.4E-09 5.1E-14 101.8 11.1 91 13-115 89-179 (290)
34 PRK14614 4-diphosphocytidyl-2- 98.9 5.5E-09 1.2E-13 98.7 11.1 91 13-115 84-174 (280)
35 TIGR01240 mevDPdecarb diphosph 98.9 4.2E-08 9.1E-13 94.0 16.7 52 13-64 84-135 (305)
36 PRK00343 ipk 4-diphosphocytidy 98.9 1E-08 2.3E-13 96.5 11.2 90 13-115 86-175 (271)
37 PRK14609 4-diphosphocytidyl-2- 98.9 1.1E-08 2.3E-13 96.4 11.1 91 13-115 81-172 (269)
38 PRK14616 4-diphosphocytidyl-2- 98.9 1.2E-08 2.6E-13 96.6 11.4 93 12-115 81-173 (287)
39 TIGR00144 beta_RFAP_syn beta-R 98.9 2.2E-08 4.8E-13 96.6 12.0 92 13-115 81-191 (324)
40 PTZ00299 homoserine kinase; Pr 98.8 2.1E-08 4.5E-13 97.3 10.8 93 13-115 81-180 (336)
41 COG1685 Archaeal shikimate kin 98.7 6.7E-08 1.4E-12 89.9 10.7 99 13-115 69-170 (278)
42 PRK14615 4-diphosphocytidyl-2- 98.7 7.7E-08 1.7E-12 91.7 10.9 91 13-115 87-178 (296)
43 PRK14612 4-diphosphocytidyl-2- 98.6 2.2E-07 4.8E-12 87.6 10.3 88 13-116 82-169 (276)
44 PRK00650 4-diphosphocytidyl-2- 98.6 2.8E-07 6E-12 87.7 10.7 91 13-115 79-169 (288)
45 PRK04181 4-diphosphocytidyl-2- 98.4 1.7E-06 3.8E-11 81.0 11.4 100 13-128 85-184 (257)
46 PRK14613 4-diphosphocytidyl-2- 98.3 3E-06 6.4E-11 80.9 10.0 88 13-115 92-180 (297)
47 COG4542 PduX Protein involved 98.3 1.6E-06 3.4E-11 80.2 7.5 99 13-129 82-181 (293)
48 PRK14610 4-diphosphocytidyl-2- 98.3 6E-06 1.3E-10 78.3 11.5 98 13-128 83-182 (283)
49 PLN02407 diphosphomevalonate d 98.3 1.9E-05 4.1E-10 76.6 14.2 48 15-62 104-154 (343)
50 COG1829 Predicted archaeal kin 98.2 5.3E-05 1.2E-09 71.0 14.3 101 13-122 73-178 (283)
51 PRK05905 hypothetical protein; 98.0 4.3E-05 9.4E-10 71.7 10.5 99 13-128 85-183 (258)
52 COG3407 MVD1 Mevalonate pyroph 97.8 0.00051 1.1E-08 66.4 13.9 51 13-63 89-139 (329)
53 COG1947 IspE 4-diphosphocytidy 97.7 0.00029 6.2E-09 67.1 11.0 92 12-115 83-174 (289)
54 KOG2833 Mevalonate pyrophospha 97.4 0.004 8.6E-08 59.7 13.9 50 14-63 105-154 (395)
55 COG1907 Predicted archaeal sug 97.4 0.0072 1.6E-07 57.4 14.9 94 13-116 70-173 (312)
56 KOG4644 L-fucose kinase [Carbo 97.1 0.0038 8.3E-08 63.2 10.4 101 13-116 690-805 (948)
57 COG3890 ERG8 Phosphomevalonate 96.0 0.019 4.1E-07 54.2 6.8 86 26-115 107-202 (337)
58 KOG4519 Phosphomevalonate kina 90.9 0.54 1.2E-05 45.7 6.1 58 25-82 151-222 (459)
59 PF08544 GHMP_kinases_C: GHMP 90.8 0.35 7.6E-06 36.5 3.9 44 243-291 1-46 (85)
60 KOG1537 Homoserine kinase [Ami 89.5 0.25 5.5E-06 46.6 2.5 101 14-116 94-222 (355)
61 TIGR02957 SigX4 RNA polymerase 63.1 15 0.00032 34.6 5.3 61 190-271 124-196 (281)
62 PRK09635 sigI RNA polymerase s 57.3 20 0.00043 34.1 5.2 58 190-268 134-203 (290)
63 PRK09636 RNA polymerase sigma 53.2 27 0.00059 32.8 5.4 65 190-267 131-199 (293)
64 KOG0051 RNA polymerase I termi 37.3 46 0.001 35.1 4.5 90 180-275 321-424 (607)
65 KOG1537 Homoserine kinase [Ami 34.7 58 0.0013 31.1 4.3 52 22-73 130-188 (355)
66 PRK08241 RNA polymerase factor 32.1 78 0.0017 30.2 4.9 65 189-266 168-241 (339)
67 TIGR02960 SigX5 RNA polymerase 28.6 1.1E+02 0.0024 28.9 5.3 61 190-267 158-232 (324)
68 PF03208 PRA1: PRA1 family pro 27.3 36 0.00078 28.8 1.5 25 296-320 113-137 (153)
69 PF07359 LEAP-2: Liver-express 24.4 23 0.00049 27.1 -0.2 15 265-279 48-62 (77)
70 PF08429 PLU-1: PLU-1-like pro 20.5 6.6E+02 0.014 23.9 9.0 93 176-286 1-109 (335)
No 1
>COG0153 GalK Galactokinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.8e-58 Score=443.28 Aligned_cols=229 Identities=31% Similarity=0.384 Sum_probs=205.5
Q ss_pred CcceEEEecc---cCccEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH-hhCCCCCcccc
Q 020779 1 MKGETVVIIT---KFQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQ 76 (321)
Q Consensus 1 ~~g~~~~l~~---~~~G~~i~I~s~IP~gsGLsSSAAl~VA~~~Al~~l~g~~ls~~ela~la~~aE~-~~G~~~G~mDq 76 (321)
+||+++.+.. .++|++++|.||||.|+|||||||++||++.++.++++.++++.+++++|+++|| |+|++||+|||
T Consensus 99 vkgvi~~l~~~g~~~~G~~i~i~gnIP~GaGLSSSAAleva~~~al~~l~~~~~~k~~la~i~q~AEn~fvGvn~G~mDQ 178 (390)
T COG0153 99 VKGVIKALQKRGYAFTGLDIVISGNIPIGAGLSSSAALEVAVALALQRLFNLPLDKAELAKIAQVAENQFVGVNCGIMDQ 178 (390)
T ss_pred HHHHHHHHHhcCCCcCCeeEEEecCCCCCCCcCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhccCCcCchHHH
Confidence 4788888888 6789999999999999999999999999999999999999999999999999998 99999999999
Q ss_pred eeeeeccCCceEEeeeCCCeeEEeecCCC-ceEEEEecCccchhhcccccchHHHHHHHHHHHHHHHHHhCCCchhhhcc
Q 020779 77 AISIMAKSGFAELIDFNPIRTTDVQLPAG-GTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISK 155 (321)
Q Consensus 77 ~a~~~g~~g~~l~id~~~~~~~~i~~p~~-~~~vv~~S~v~~~k~~~a~~~Yn~Rv~Ec~~Aa~~L~~~~gi~~~~~~~~ 155 (321)
+++.+|++|+++++||++++++++|+|.+ +.|||+||++ ||.+++++||+|++||+.|++.|++ +
T Consensus 179 ~~s~~G~~~~al~ld~~~l~~~~~~~p~~~~~ivI~ns~v---kr~la~seYn~Rr~ece~A~~~l~~-~---------- 244 (390)
T COG0153 179 LASAFGKKDHALLLDCRTLEYEPVPFPVGGVSIVIVNSNV---KRELADSEYNERRAECEEAAEFLGV-S---------- 244 (390)
T ss_pred HHHHhCCCCcEEEEEcccCceEEeccCccceEEEEecCCC---ccccchhHHHHHHHHHHHHHHHHHH-h----------
Confidence 99999999999999999999999999975 9999999999 8999999999999999999999998 2
Q ss_pred cCcchhhHhHHhhhhcCCCCCCcHHHHHHhhccCCCCHHHHHHHhhhhhhHHhhccCCchhhhhhhhhhhhhhhhhhhhh
Q 020779 156 VKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYS 235 (321)
Q Consensus 156 ~~~Lrdv~~~~~~~~~~~~~~~~~~~v~~~l~~~~~t~eel~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~Ra~Hv~t 235 (321)
+++|||+++. ++++...... . +..++||++|+++
T Consensus 245 ~~~L~d~~~~-----------------------------~~~~~~~~i~---------------~--~~~~~rRa~hvv~ 278 (390)
T COG0153 245 IKSLRDVTDE-----------------------------EFAALQAEIE---------------V--DPKIARRARHVVT 278 (390)
T ss_pred hhhhhhcCHH-----------------------------HHHhhhhhcc---------------c--chHHHHHHHHHHh
Confidence 2479988763 3333321100 0 1257999999999
Q ss_pred HhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhhhhcCCCCHHhH-HHHHHHHhccc
Q 020779 236 EAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECRYMHDC-AFHIFLHFFVP 294 (321)
Q Consensus 236 E~~RV~~~~~aL~~~d~~~~~~~~lG~LMn~SH~Slr~~ye~ScpEl~-~~~~~~~~~~~ 294 (321)
||+||+++++||+++| +++||+|||+||+||||+|||||||+| ++++++...+.
T Consensus 279 En~Rvl~a~~Al~~~d-----l~~fG~Lm~~SH~slrddyevt~pElD~lve~a~~~~G~ 333 (390)
T COG0153 279 ENQRVLEAAKALRSGD-----LTEFGELMNESHESLRDDYEVTCPELDTLVEIALAAGGA 333 (390)
T ss_pred HHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHcCCc
Confidence 9999999999999999 999999999999999999999999986 78888776664
No 2
>PLN02521 galactokinase
Probab=100.00 E-value=2.3e-56 Score=448.99 Aligned_cols=286 Identities=67% Similarity=0.964 Sum_probs=255.2
Q ss_pred ccEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhCCCCCcccceeeeeccCCceEEeee
Q 020779 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 92 (321)
Q Consensus 13 ~G~~i~I~s~IP~gsGLsSSAAl~VA~~~Al~~l~g~~ls~~ela~la~~aE~~~G~~~G~mDq~a~~~g~~g~~l~id~ 92 (321)
.||++.|.|+||+|+|||||||++||++.|++.++|.++++++++++|+++|+++|.+||+|||+++++|++|+++++||
T Consensus 148 ~g~~i~i~s~IP~gsGLgSSAA~~vA~~~al~~~~~~~l~~~~la~la~~~E~~~g~~~g~mDq~as~~g~~g~al~~d~ 227 (497)
T PLN02521 148 VGLDVVVDGTVPTGSGLSSSAALVCSAAIAIMAALGLNFTKKEVAQFTCKCERHIGTQSGGMDQAISIMAQQGVAKLIDF 227 (497)
T ss_pred CCeEEEEecCCCCCCCcchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhCccCCCCChHHHHHHHhcCCCcEEEEec
Confidence 49999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeeEEeecCCCceEEEEecCccchhhcccccchHHHHHHHHHHHHHHHHHhCCCchhhhcccCcchhhHhHHhhhhcC
Q 020779 93 NPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFACK 172 (321)
Q Consensus 93 ~~~~~~~i~~p~~~~~vv~~S~v~~~k~~~a~~~Yn~Rv~Ec~~Aa~~L~~~~gi~~~~~~~~~~~Lrdv~~~~~~~~~~ 172 (321)
++++++++|+|.++.|||+||+++++||.+++++||+||+||+.|+++|++++|++......++++|||+++.+..+.+.
T Consensus 228 ~~l~~~~v~~p~~~~~vv~~s~v~~~k~~~a~~~Yn~R~~ec~~Aa~~L~~~~~~~~~~~~~~~~~Lrd~~~~~~~~~~~ 307 (497)
T PLN02521 228 NPVRATDVQLPAGGTFVIANSLAESNKAVTAATNYNNRVVECRLAAIVLAVKLGMSAEEAISKVKTLSDVEGLCVSFAGS 307 (497)
T ss_pred CCCceEEeecCCCcEEEEEECCCcccccccccccccHHHHHHHHHHHHHHhhcCCcchhcccccCCHHHHHHHHhhhccc
Confidence 99999999999999999999999999999999999999999999999999988875432223477999998755433455
Q ss_pred CCCCCcHHHHHHhhccCCCCHHHHHHHhhhhhhHHhhccCCchhhhhhhhhhhhhhhhhhhhhHhHHHHHHHHHHhcCCC
Q 020779 173 NGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLS 252 (321)
Q Consensus 173 ~~~~~~~~~v~~~l~~~~~t~eel~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~Ra~Hv~tE~~RV~~~~~aL~~~d~ 252 (321)
..+.+|++.+++.+.+.+||+++++++++...+++.++.++.+++++.++.|.+|+||+|||+|+.||.+|+++|+++++
T Consensus 308 ~~~~~~~~~~~~~l~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Ra~Hvv~E~~RV~~~~~al~~~~~ 387 (497)
T PLN02521 308 HGSSDPAVAVKELLHEGPYTAEEIEEILGESLTSIFKNSPTSLAVLKAAKHFKLHQRAVHVYSEAKRVHAFRDTVSSSLS 387 (497)
T ss_pred ccchhhHHHhhhhhccccCCHHHHHHHhCCcHHHHhhccccccccccccchhHHhhhhhheecHHHHHHHHHHHHHhcCc
Confidence 67778899999999999999999999987667777777666666666788899999999999999999999999999876
Q ss_pred ChHHHHHHHHHHHHhhhhhhhhcCCCCHHhH-HHHHHHHhcccCCCcc
Q 020779 253 EEDKLKKLGDLMNDSHHSCSVLYECRYMHDC-AFHIFLHFFVPMNSKI 299 (321)
Q Consensus 253 ~~~~~~~lG~LMn~SH~Slr~~ye~ScpEl~-~~~~~~~~~~~~~~~~ 299 (321)
+++++++||+||++||.|+|++|+|||||+| ++++++.. +-.-+|+
T Consensus 388 ~~~~~~~lg~lm~~sh~slr~~~~vS~~elD~lv~~a~~~-Ga~GaRl 434 (497)
T PLN02521 388 EEEKLKKLGDLMNESHYSCSVLYECSCPELEELVKVCRDN-GALGARL 434 (497)
T ss_pred cchHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHhc-CCcEEEE
Confidence 6777999999999999999999999999986 88888874 4444444
No 3
>PLN02865 galactokinase
Probab=100.00 E-value=5e-52 Score=409.85 Aligned_cols=229 Identities=26% Similarity=0.258 Sum_probs=198.3
Q ss_pred cceEEEecc---cC-ccEEEEEEeCC-CCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH-hhCCCCCccc
Q 020779 2 KGETVVIIT---KF-QLFNHINSLFF-NLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMD 75 (321)
Q Consensus 2 ~g~~~~l~~---~~-~G~~i~I~s~I-P~gsGLsSSAAl~VA~~~Al~~l~g~~ls~~ela~la~~aE~-~~G~~~G~mD 75 (321)
||++.++.+ .+ +||++.|+|+| |+|+|||||||++||++.|++.+++.++++++++++|+++|| |+|+|||+||
T Consensus 114 ~gv~~~l~~~g~~~~~G~~~~v~g~vpP~gsGLsSSAAl~va~~~al~~~~~~~~~~~~la~~a~~~E~~~~G~~~G~mD 193 (423)
T PLN02865 114 RGAVYALQSRGHALSQGITGYISGSEGLDSSGLSSSAAVGVAYLLALENANNLTVSPEDNIELDRLIENEYLGLRNGILD 193 (423)
T ss_pred HHHHHHHHHcCCCCCCceEEEEECCCCCCCCcccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCcccc
Confidence 677777765 23 69999999999 579999999999999999999999999999999999999998 9999999999
Q ss_pred ceeeeeccCCceEEeeeCCCeeEEeecC-------CCceEEEEecCccchhhccc-ccchHHHHHHHHHHHHHHHHHhCC
Q 020779 76 QAISIMAKSGFAELIDFNPIRTTDVQLP-------AGGTFVVAHSLAESLKAITA-ASNYNNRVVECRLTAIVLAIKLGM 147 (321)
Q Consensus 76 q~a~~~g~~g~~l~id~~~~~~~~i~~p-------~~~~~vv~~S~v~~~k~~~a-~~~Yn~Rv~Ec~~Aa~~L~~~~gi 147 (321)
|+++++|++|++++|||++++++.+|+| .++.|+++||++ +|.++ +++||.||.||+.|+++|++++|+
T Consensus 194 Q~as~~~~~g~~~~iDf~~l~~~~vpl~~~~~~~~~~~~ivv~~s~~---~h~l~~~~~Yn~Rr~Ec~~aa~~l~~~~~~ 270 (423)
T PLN02865 194 QSAILLSRYGCLTFMDCKTLDHKLVSLQFQQPGGEKPFKILLAFSGL---RHALTNKPGYNLRVSECQEAARFLLEASGN 270 (423)
T ss_pred HHHHHhcccCceEEEEccCCCcceeecCcccccCCCCeEEEEEeCCC---chhhcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999988888876 368999999999 68776 899999999999999999988765
Q ss_pred CchhhhcccCcchhhHhHHhhhhcCCCCCCcHHHHHHhhccCCCCHHHHHHHhhhhhhHHhhccCCchhhhhhhhhhhhh
Q 020779 148 KPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLH 227 (321)
Q Consensus 148 ~~~~~~~~~~~Lrdv~~~~~~~~~~~~~~~~~~~v~~~l~~~~~t~eel~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~ 227 (321)
.. ...+|||+.. +++.+... .++ ..++
T Consensus 271 ~~-----~~~~Lr~~~~-----------------------------~~~~~~~~-~l~------------------~~l~ 297 (423)
T PLN02865 271 DE-----LEPLLCNVEP-----------------------------EVYEAHKC-KLE------------------AVLA 297 (423)
T ss_pred cc-----chhhhhcCCH-----------------------------HHHHHHHh-hcC------------------HHHH
Confidence 32 1346887743 23322211 011 1478
Q ss_pred hhhhhhhhHhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhhhhcCCCCHHhH-HHHHHHHh
Q 020779 228 QRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECRYMHDC-AFHIFLHF 291 (321)
Q Consensus 228 ~Ra~Hv~tE~~RV~~~~~aL~~~d~~~~~~~~lG~LMn~SH~Slr~~ye~ScpEl~-~~~~~~~~ 291 (321)
+|++|||+|++||.+++++|+++| ++.||+|||+||.|||++|||||||+| ++++++..
T Consensus 298 ~Ra~Hv~~E~~Rv~~~~~al~~~d-----~~~~g~lm~~sh~Slrd~yevS~~eld~lv~~a~~~ 357 (423)
T PLN02865 298 RRAEHYFSENMRVIKGVEAWASGN-----LEEFGKLISASGLSSIENYECGCEPLIQLYEILLKA 357 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCC-----HHHHHHHHHHhhhhHHhhccCCcHHHHHHHHHHHhc
Confidence 999999999999999999999999 999999999999999999999999986 77788875
No 4
>PTZ00290 galactokinase; Provisional
Probab=100.00 E-value=2.3e-51 Score=409.08 Aligned_cols=242 Identities=18% Similarity=0.171 Sum_probs=186.8
Q ss_pred CccEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCC-----------------CC---CHHHHHHHHHHHHH-hhCCC
Q 020779 12 FQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGV-----------------EV---PKKEIAQLTCECEQ-FIGTQ 70 (321)
Q Consensus 12 ~~G~~i~I~s~IP~gsGLsSSAAl~VA~~~Al~~l~g~-----------------~l---s~~ela~la~~aE~-~~G~~ 70 (321)
++||++.|.|+||+|+|||||||++||++.|++++++. .+ +..++|.+||++|| |+|+|
T Consensus 132 ~~G~d~~i~gdVP~GaGLSSSAAleva~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~aqraEn~~vGv~ 211 (468)
T PTZ00290 132 LQGVCMVVHGTLPMGAGMSASASFGVALLNAINTVVTRRYKGCPTSPGRRYSILPPMSKEELIELAKQARRIETEFCGVN 211 (468)
T ss_pred CCCeEEEEeCCCCCCCCcchHHHHHHHHHHHHHHHhhhhccccccccccccccccccCcccHHHHHHHHHHHHHhhcCCC
Confidence 46999999999999999999999999999999998732 12 34899999999999 99999
Q ss_pred CCcccceeeeeccCCceEEeeeCCCeeEEeecC----CCceEEEEecCccchhhcccc---cchHHHHHHHHHHHHHHHH
Q 020779 71 SGGMDQAISIMAKSGFAELIDFNPIRTTDVQLP----AGGTFVVAHSLAESLKAITAA---SNYNNRVVECRLTAIVLAI 143 (321)
Q Consensus 71 ~G~mDq~a~~~g~~g~~l~id~~~~~~~~i~~p----~~~~~vv~~S~v~~~k~~~a~---~~Yn~Rv~Ec~~Aa~~L~~ 143 (321)
||+|||+++++|++|+++++||++++++++|++ .++.|+|+||++ +|.+++ .+||.||.||+.|++.|++
T Consensus 212 cGiMDQ~asa~g~~~~al~iD~~~l~~~~v~l~~~~~~~~~~vV~nS~v---~h~l~~s~~~~Yn~Rr~ece~a~~~L~~ 288 (468)
T PTZ00290 212 VGIMDQFISAFAEEDKFMFLDCKSLTFESHDMTPLLGDGACFLLIDSMI---KHDLLGGTAGMYNTVRSDQEGAQKKIGK 288 (468)
T ss_pred cchhhHHHHHhCCCCcEEEEecCCCeEEEeccCCCCCCCcEEEEEeCCC---cchhccccchhhHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999985 479999999999 566654 4999999999999999976
Q ss_pred HhCCCchhhhcccC-cchhhHhHHhhhhcCCCCCCcHHHHHHhhccCCCCHHHHHHHhhhhhhHHhhccCCchhhhhhhh
Q 020779 144 KLGMKPQEAISKVK-TLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAK 222 (321)
Q Consensus 144 ~~gi~~~~~~~~~~-~Lrdv~~~~~~~~~~~~~~~~~~~v~~~l~~~~~t~eel~~~~~~~~~~~~~~~~~~~~v~~~~~ 222 (321)
+. + +.+. +|||+.. .+++||+++-.. ++...+.+.+|
T Consensus 289 ~~-l------~~~~~~Lrd~~~----------------------~~~~~~~~~~~~-------~~~~~~~~~l~------ 326 (468)
T PTZ00290 289 HR-Y------RGKPFTFSDLVR----------------------NPKKYTFDGDVV-------AFMESCKPLMT------ 326 (468)
T ss_pred cc-c------cchhhhHHHhhh----------------------ccccccccccHH-------HHHHHhhhcCC------
Confidence 41 0 1111 4554421 233455543211 11111111111
Q ss_pred hhhhhhhhhhhhhHhHHHHHHHHHHhcCC--CChHHHHHHHHHHHHhhhhhhhhcCCCCHHhH-HHHHHHHhcccCCCcc
Q 020779 223 QYKLHQRAAHVYSEAKRVHAFKDTVSSNL--SEEDKLKKLGDLMNDSHHSCSVLYECRYMHDC-AFHIFLHFFVPMNSKI 299 (321)
Q Consensus 223 ~~~l~~Ra~Hv~tE~~RV~~~~~aL~~~d--~~~~~~~~lG~LMn~SH~Slr~~ye~ScpEl~-~~~~~~~~~~~~~~~~ 299 (321)
+.+++|++|||+||+||.+|+++|+..+ .++.++++||+||++||.|||++|||||||+| +++++....+-.-+|+
T Consensus 327 -~~~~~Ra~HVitEn~RV~~a~~al~~~~~l~~~~~~~~lG~lm~~sh~sL~~~~~vS~~elD~lv~~~~~~~G~~GaRl 405 (468)
T PTZ00290 327 -PGEFERGTYNIMEQIRTLEFIKLNDPELPLSREERFRKAGEILNAGHQGMRDLMKITTPELDFIHELINEEKGVAGGRM 405 (468)
T ss_pred -HHHHHHHHHHhhHHHHHHHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCcEEEE
Confidence 2689999999999999999999996311 01223999999999999999999999999987 6666655544444443
No 5
>PRK05322 galactokinase; Provisional
Probab=100.00 E-value=1.4e-45 Score=361.89 Aligned_cols=215 Identities=27% Similarity=0.294 Sum_probs=191.7
Q ss_pred ccEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH-hhCCCCCcccceeeeeccCCceEEee
Q 020779 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSGFAELID 91 (321)
Q Consensus 13 ~G~~i~I~s~IP~gsGLsSSAAl~VA~~~Al~~l~g~~ls~~ela~la~~aE~-~~G~~~G~mDq~a~~~g~~g~~l~id 91 (321)
.||++.|.|+||+|+|||||||++||++.|+++++|.++++++++++|+.+|+ ++|+|||+|||+++++|++|+++++|
T Consensus 111 ~g~~i~i~s~iP~gsGLgSSAA~~va~~~al~~~~~~~l~~~~la~~a~~~E~~~~G~~sG~mDq~as~~G~~~~~~~~d 190 (387)
T PRK05322 111 HGFDILIYGNIPNGAGLSSSASIELLTGVILKDLFNLDLDRLELVKLGQKTENEFIGVNSGIMDQFAIGMGKKDHAILLD 190 (387)
T ss_pred CCEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhccCCCCcchHHHHHHHhccCCeEEEEe
Confidence 79999999999999999999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred eCCCeeEEeecCC-CceEEEEecCccchhhcccccchHHHHHHHHHHHHHHHHHhCCCchhhhcccCcchhhHhHHhhhh
Q 020779 92 FNPIRTTDVQLPA-GGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFA 170 (321)
Q Consensus 92 ~~~~~~~~i~~p~-~~~~vv~~S~v~~~k~~~a~~~Yn~Rv~Ec~~Aa~~L~~~~gi~~~~~~~~~~~Lrdv~~~~~~~~ 170 (321)
|++++++.+|+|. ++.|+|+||++ ||.+++++||.||.||+.|++.+++++++ .+|||++.
T Consensus 191 ~~~~~~~~~~~~~~~~~lvv~dsg~---~~~~~~~~yn~r~~e~~~a~~~l~~~~~~---------~~l~~~~~------ 252 (387)
T PRK05322 191 CNTLEYEYVPLDLGDYVIVIMNTNK---RRELADSKYNERRAECEKALEELQKKLDI---------KSLGELTE------ 252 (387)
T ss_pred cCCCceEEeccCCCCeEEEEEECCC---ccccCcchhhHHHHHHHHHHHHHhhhcCc---------cchhcCCH------
Confidence 9999999999874 67899999999 89999999999999999999999987543 36887654
Q ss_pred cCCCCCCcHHHHHHhhccCCCCHHHHHHHhhhhhhHHhhccCCchhhhhhhhhhhhhhhhhhhhhHhHHHHHHHHHHhcC
Q 020779 171 CKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSN 250 (321)
Q Consensus 171 ~~~~~~~~~~~v~~~l~~~~~t~eel~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~Ra~Hv~tE~~RV~~~~~aL~~~ 250 (321)
++++....... +..+++|++|+++|+.||.+++++|+++
T Consensus 253 -----------------------~~~~~~~~~~~------------------~~~~~~r~~h~v~e~~r~~~~~~al~~~ 291 (387)
T PRK05322 253 -----------------------EEFDEYSYLIK------------------DETLLKRARHAVTENQRTLKAVKALKAG 291 (387)
T ss_pred -----------------------HHHHHHHhhcC------------------CHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 22222211000 1267999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHhhhhhhhhcCCCCHHhH-HHHHHHHh
Q 020779 251 LSEEDKLKKLGDLMNDSHHSCSVLYECRYMHDC-AFHIFLHF 291 (321)
Q Consensus 251 d~~~~~~~~lG~LMn~SH~Slr~~ye~ScpEl~-~~~~~~~~ 291 (321)
| ++.||++|++||.+|++.|++||||+| ++++++..
T Consensus 292 d-----~~~lg~lm~~sh~~L~~~y~~s~~eld~lv~~a~~~ 328 (387)
T PRK05322 292 D-----LEKFGRLMNASHVSLRDDYEVTGLELDTLVEAAWKQ 328 (387)
T ss_pred C-----HHHHHHHHHHhhHHHHhhhcCCCHhHHHHHHHHHhc
Confidence 9 999999999999999999999999986 77788643
No 6
>PRK05101 galactokinase; Provisional
Probab=100.00 E-value=2.9e-45 Score=359.03 Aligned_cols=213 Identities=28% Similarity=0.336 Sum_probs=190.1
Q ss_pred CccEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH-hhCCCCCcccceeeeeccCCceEEe
Q 020779 12 FQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSGFAELI 90 (321)
Q Consensus 12 ~~G~~i~I~s~IP~gsGLsSSAAl~VA~~~Al~~l~g~~ls~~ela~la~~aE~-~~G~~~G~mDq~a~~~g~~g~~l~i 90 (321)
..|+++.|.|+||+|+|||||||++||++.|++.+++.++++++++++|+++|+ ++|.|||+|||+++++|+.|+++++
T Consensus 110 ~~g~~i~i~~~iP~gaGLgSSAA~~va~~~al~~~~~~~l~~~~la~~a~~~E~~~~G~~~G~~Dq~~s~~G~~~~~~~~ 189 (382)
T PRK05101 110 FGGADLVISGNVPQGAGLSSSASLEVAVGQTFQQLYHLPLSGAEIALNGQEAENQFVGCNCGIMDQLISALGKKDHALLI 189 (382)
T ss_pred CCCeEEEEeCCCCCCCCcchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHcCCCCeEEEE
Confidence 469999999999999999999999999999999999999999999999999998 9999999999999999999999999
Q ss_pred eeCCCeeEEeecCCCceEEEEecCccchhhcccccchHHHHHHHHHHHHHHHHHhCCCchhhhcccCcchhhHhHHhhhh
Q 020779 91 DFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFA 170 (321)
Q Consensus 91 d~~~~~~~~i~~p~~~~~vv~~S~v~~~k~~~a~~~Yn~Rv~Ec~~Aa~~L~~~~gi~~~~~~~~~~~Lrdv~~~~~~~~ 170 (321)
|+++.+++++|+|.++.|+|+||++ +|.+.+++||.|++||+.|++.++.. +|+++..
T Consensus 190 d~~~~~~~~~~~~~~~~~vv~~sg~---~~~l~~~~y~~r~~e~~~A~~~l~~~-------------~l~~~~~------ 247 (382)
T PRK05101 190 DCRSLETKAVPMPEGVAVVIINSNV---KRGLVDSEYNTRRQQCETAARFFGVK-------------ALRDVTL------ 247 (382)
T ss_pred EcCCCceEEeeCCCCcEEEEEeCCC---CccccccchhHHHHHHHHHHHHhChH-------------hhhcCCH------
Confidence 9999999999999999999999999 68888899999999999999988753 5666532
Q ss_pred cCCCCCCcHHHHHHhhccCCCCHHHHHHHhhhhhhHHhhccCCchhhhhhhhhhhhhhhhhhhhhHhHHHHHHHHHHhcC
Q 020779 171 CKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSN 250 (321)
Q Consensus 171 ~~~~~~~~~~~v~~~l~~~~~t~eel~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~Ra~Hv~tE~~RV~~~~~aL~~~ 250 (321)
+++....... ...+++|++|+++|++||.+++++|+++
T Consensus 248 -----------------------~~~~~~~~~l-------------------~~~~~~r~~h~i~E~~rv~~a~~al~~~ 285 (382)
T PRK05101 248 -----------------------EQFNAVAAEL-------------------DPVVAKRARHVITENARTLEAASALAAG 285 (382)
T ss_pred -----------------------HHHHHHHhhC-------------------CHHHHHHHHHHhHHHHHHHHHHHHHHcC
Confidence 2222111100 1157899999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHhhhhhhhhcCCCCHHhH-HHHHHHHhcc
Q 020779 251 LSEEDKLKKLGDLMNDSHHSCSVLYECRYMHDC-AFHIFLHFFV 293 (321)
Q Consensus 251 d~~~~~~~~lG~LMn~SH~Slr~~ye~ScpEl~-~~~~~~~~~~ 293 (321)
| +++||+|||+||.|||++|+|||||+| +++++++..+
T Consensus 286 d-----~~~lG~Lm~~sh~~lr~~~~vS~~eld~lv~~a~~~~G 324 (382)
T PRK05101 286 D-----LKRMGELMAESHASMRDDFEITVPQIDTLVEIVKAVIG 324 (382)
T ss_pred C-----HHHHHHHHHHHhHHHHhhcCCCCHhHHHHHHHHHhccC
Confidence 9 999999999999999999999999985 8889998633
No 7
>KOG0631 consensus Galactokinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.5e-45 Score=357.22 Aligned_cols=289 Identities=34% Similarity=0.437 Sum_probs=246.1
Q ss_pred ccEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHh-CCC--CCHHHHHHHHHHHHHhhCCCCCcccceeeeeccCCceEE
Q 020779 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAF-GVE--VPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAEL 89 (321)
Q Consensus 13 ~G~~i~I~s~IP~gsGLsSSAAl~VA~~~Al~~l~-g~~--ls~~ela~la~~aE~~~G~~~G~mDq~a~~~g~~g~~l~ 89 (321)
.|+.+...|++|.|+|||||||+.++.+.|...+. |.+ .++++++.++..+|+++|+++|+|||.++++|++|++++
T Consensus 141 vGl~~l~~g~vPtgsgLsSsaa~~c~a~lA~~~~~~gpn~~~~kkd~~~i~~~ae~~~G~~~gGmdq~asvl~~~~~Al~ 220 (489)
T KOG0631|consen 141 VGLSILNDGSVPTGSGLSSSAAWLCAAALATLKLNLGPNFIISKKDLATITVVAESYIGLNSGGMDQAASVLAEKGHALL 220 (489)
T ss_pred cceEEEecCCCCCCCCcchhHHHHHHHHHHHHHHhcCCCcccchhhhhcceEEeecccCcCCCcHHHHHHHHHhcCceEE
Confidence 59999999999999999999999999999999999 887 889999999999999999999999999999999999999
Q ss_pred ee--eCCCeeEEeecCCCceEEEEecCccchhhcccccchHHHHHHHHHHHHHHHHHhCCCchhhhcccCcchhhHhHHh
Q 020779 90 ID--FNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCV 167 (321)
Q Consensus 90 id--~~~~~~~~i~~p~~~~~vv~~S~v~~~k~~~a~~~Yn~Rv~Ec~~Aa~~L~~~~gi~~~~~~~~~~~Lrdv~~~~~ 167 (321)
+| +.|.+...+++|.+-+|+|.+|.+.+||..++.++||.|+.||+.|+..++++++++...........++..+..+
T Consensus 221 v~~~~~Pf~~~~lk~~~~~vfvI~~~L~~~nk~~~a~tnynlRv~E~~ia~~~la~k~~~~~~~~~~~~~~~~~~~~~i~ 300 (489)
T KOG0631|consen 221 VDPYFTPFRRSMLKLPDGGVFVIANSLVESNKAETAETNYNLRVVEGTIAAGELAAKILVELPAYILRYQLQRAWRGDIG 300 (489)
T ss_pred ecccCCccccccccCCCCceEEEechhhhhcchhhhhhhhhceeEeeehhhHHHHHHhhcccHHHHHhhhhhhccccccc
Confidence 99 5688889999998889999999999999999999999999999999999999988765421111111111000000
Q ss_pred hhhcCCCCCCcHHHHHHhhccCCCCHHHHHHHhhhhhhHHhhccCCchhhhhhhhhhhhhhhhhhhhhHhHHHHHHHHHH
Q 020779 168 AFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTV 247 (321)
Q Consensus 168 ~~~~~~~~~~~~~~v~~~l~~~~~t~eel~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~Ra~Hv~tE~~RV~~~~~aL 247 (321)
.+-.+.++|+..|++.++++||+.+|++..++.+.+++.+.+++..++ ....+++|+||+||++|+.||.++..+|
T Consensus 301 --~~~~~~~~~l~~v~~~~~~e~f~~ee~~~~l~~~~~~f~~~~~T~~~v--~~~~~k~~~rakHv~sea~rv~q~~~~~ 376 (489)
T KOG0631|consen 301 --EGYERAEEMLGLVEESLKPEGFNIEEVARALGLDTEEFLQSLLTLAAV--DLQVKKLYQRAKHVYSEALRVLQEEKLC 376 (489)
T ss_pred --hhHHHHHHHHHHHHhhcCcCCCCHHHHHHHhccchHHHHHHhccccch--hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 022467799999999999999999999999999999999999999998 7778899999999999999999999999
Q ss_pred hcCCCCh-HHHHHHHHHHHHhhhhhhhhcCCCCHHh-HHHHHHHHh--cccCCCccchhhhh
Q 020779 248 SSNLSEE-DKLKKLGDLMNDSHHSCSVLYECRYMHD-CAFHIFLHF--FVPMNSKILWPFCL 305 (321)
Q Consensus 248 ~~~d~~~-~~~~~lG~LMn~SH~Slr~~ye~ScpEl-~~~~~~~~~--~~~~~~~~~~~~~~ 305 (321)
.++.... ..++.||+|||+||+||+++|||||||+ +++++++.. .++|=.--=|--|.
T Consensus 377 ~~a~~~~d~~~~~~g~LmneS~~Sc~~~yEcscpel~qL~kiala~g~~gaRlTGaGwGGc~ 438 (489)
T KOG0631|consen 377 ARAPGRADGFLADFGRLMNESHRSCDVLYECSCPELDQLCKIALANGGVGARLTGAGWGGCT 438 (489)
T ss_pred hcCccchhhhHHHHHHHhhhhhHHHHHHHhcCCHhHHHHHHHHHhcCCccceeeccccccce
Confidence 9976433 4589999999999999999999999996 477777654 34444444565553
No 8
>TIGR00131 gal_kin galactokinase. The galactokinases found by this model are divided into two sets. Prokaryotic forms are generally shorter. The eukaryotic forms are longer because of additional central regions and in some cases are known to be bifunctional, with regulatory activities that are independent of galactokinase activity.
Probab=100.00 E-value=5.3e-44 Score=350.37 Aligned_cols=224 Identities=30% Similarity=0.338 Sum_probs=191.9
Q ss_pred ccEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH-hhCCCCCcccceeeeeccCCceEEee
Q 020779 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSGFAELID 91 (321)
Q Consensus 13 ~G~~i~I~s~IP~gsGLsSSAAl~VA~~~Al~~l~g~~ls~~ela~la~~aE~-~~G~~~G~mDq~a~~~g~~g~~l~id 91 (321)
.|+++.|.|+||+|+|||||||++||++.|++.+++.++++++++++++.+|+ ++|+|||+|||+++++|+.|+++++|
T Consensus 109 ~g~~i~i~s~iP~gsGLgSSAA~~vA~~~al~~~~~~~~~~~~l~~~a~~~E~~~~G~~~g~~Dq~~s~~G~~~~~l~~~ 188 (386)
T TIGR00131 109 LGADIVCSGNVPTGSGLSSSAAFECAVGAVLQNMGHLPLDSKQILLRIQVAENHFVGVNCGIMDQAASVLGKEDHALLVE 188 (386)
T ss_pred CceEEEEECCCCCCCCcchHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCccCCCcchHHHHHHHhccCCcEEEEE
Confidence 59999999999999999999999999999999999999999999999999998 99999999999999999999999999
Q ss_pred eCCCeeEEeecCC-CceEEEEecCccchhhcccccchHHHHHHHHHHHHHHHHHhCCCchhhhcccCcchhhHhHHhhhh
Q 020779 92 FNPIRTTDVQLPA-GGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFA 170 (321)
Q Consensus 92 ~~~~~~~~i~~p~-~~~~vv~~S~v~~~k~~~a~~~Yn~Rv~Ec~~Aa~~L~~~~gi~~~~~~~~~~~Lrdv~~~~~~~~ 170 (321)
|++.+++++|+|. ++.|+|+||++ +|.+.+..||.||+||+.|++.|+.+. ..+||++.+..
T Consensus 189 ~~~~~~~~~~~~~~~~~lvv~~s~~---~~~t~~~~y~~r~~e~~~a~~~l~~~~----------~~~lr~~~~~~---- 251 (386)
T TIGR00131 189 CRSLKATPFKFPQLGIAFVIANTNV---KRTLAPSNYNTRRQECTTAANFLAATD----------KGALRDFMNEY---- 251 (386)
T ss_pred cCCCceeeecCCCCCeEEEEEeCCC---ccccccchhHHHHHHHHHHHHHhcccc----------ccchhhCCHHH----
Confidence 9999999999997 89999999999 788999999999999999999998641 23677764421
Q ss_pred cCCCCCCcHHHHHHhhccCCCCHHHHHHHhhhhhhHHhhccCCchhhhhhhhhhhhhhhhhhhhhHhHHHHHHHHHHhcC
Q 020779 171 CKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSN 250 (321)
Q Consensus 171 ~~~~~~~~~~~v~~~l~~~~~t~eel~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~Ra~Hv~tE~~RV~~~~~aL~~~ 250 (321)
+ +.+.+.++.. . ...++|++|+++|+.||.+++++|+++
T Consensus 252 --------------------~--~~~~~~~~~~-~------------------~~~~~r~~h~v~e~~rv~~~~~al~~~ 290 (386)
T TIGR00131 252 --------------------F--ARYIARLTKM-L------------------PLVEERAKHVVSENLRVLKAVKAMKDN 290 (386)
T ss_pred --------------------H--hhhHhhHhhc-C------------------HHHHhhHheeehHHHHHHHHHHHHHhC
Confidence 0 0000111100 1 145789999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHhhhhhhhhcCCCCHHhH-HHHHHHHhcccCCCcc
Q 020779 251 LSEEDKLKKLGDLMNDSHHSCSVLYECRYMHDC-AFHIFLHFFVPMNSKI 299 (321)
Q Consensus 251 d~~~~~~~~lG~LMn~SH~Slr~~ye~ScpEl~-~~~~~~~~~~~~~~~~ 299 (321)
| +++||++||+||.||+++|+|||||+| +++.+...-+-.-.|+
T Consensus 291 d-----~~~lG~lm~~sh~~l~~~~~vs~peld~lv~~a~~~~GAlGakl 335 (386)
T TIGR00131 291 D-----FKQFGALMNESHASCDDDYECTCPEIDELVCSAALVNGSGGSRM 335 (386)
T ss_pred c-----HHHHHHHHHHhhHHHHHhcCCCCHHHHHHHHHHHhcCCCcEEEE
Confidence 9 999999999999999999999999998 8877755444444444
No 9
>PRK00555 galactokinase; Provisional
Probab=100.00 E-value=3.2e-43 Score=342.53 Aligned_cols=228 Identities=23% Similarity=0.282 Sum_probs=192.9
Q ss_pred cceEEEecc---cCccEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH-hhCCCCCcccce
Q 020779 2 KGETVVIIT---KFQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQA 77 (321)
Q Consensus 2 ~g~~~~l~~---~~~G~~i~I~s~IP~gsGLsSSAAl~VA~~~Al~~l~g~~ls~~ela~la~~aE~-~~G~~~G~mDq~ 77 (321)
+|++.++.. +++|+++.|.|+||+|+|||||||++||++.|+++++|.++++++++++|+.+|+ ++|+|||+|||+
T Consensus 76 ~gv~~~l~~~g~~~~g~~i~i~s~iP~g~GLgSSAA~~va~~~al~~~~~~~~~~~~la~~a~~aE~~~~G~~~G~~Dq~ 155 (363)
T PRK00555 76 AGVIWALRGAGHPVPGGAMSITSDVEIGSGLSSSAALECAVLGAVGAATGTRIDRLEQARLAQRAENEYVGAPTGLLDQL 155 (363)
T ss_pred HHHHHHHHHcCCCCCCeEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhCCCCCChhHHH
Confidence 345445544 3479999999999999999999999999999999999999999999999999998 999999999999
Q ss_pred eeeeccCCceEEeeeCCCeeEEeecCC---CceEEEEecCccchhhcccccchHHHHHHHHHHHHHHHHHhCCCchhhhc
Q 020779 78 ISIMAKSGFAELIDFNPIRTTDVQLPA---GGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAIS 154 (321)
Q Consensus 78 a~~~g~~g~~l~id~~~~~~~~i~~p~---~~~~vv~~S~v~~~k~~~a~~~Yn~Rv~Ec~~Aa~~L~~~~gi~~~~~~~ 154 (321)
++++|+.|+++++||++.+++++|+|+ ++.|+++||++ +|.+++++||.||.||+.+++.++.
T Consensus 156 as~~G~~~~~~~~d~~~~~~~~v~~~~~~~~~~lvv~~s~~---~~~~~~~~y~~rr~~~~~~~~~~~~----------- 221 (363)
T PRK00555 156 AALFGAPKTALLIDFRDLTVRPVAFDPDAAGVVLLLMDSRA---RHRHAGGEYAARRASCERAAADLGV----------- 221 (363)
T ss_pred HHHhCCCCeEEEEEcCCCcEEEeccCCCcCceEEEEEcCCC---cccccchhhHHHHHHHHHHHHHhCc-----------
Confidence 999999999999999998899999875 46799999999 6888999999999999999887753
Q ss_pred ccCcchhhHhHHhhhhcCCCCCCcHHHHHHhhccCCCCHHHHHHHhhhhhhHHhhccCCchhhhhhhhhhhhhhhhhhhh
Q 020779 155 KVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVY 234 (321)
Q Consensus 155 ~~~~Lrdv~~~~~~~~~~~~~~~~~~~v~~~l~~~~~t~eel~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~Ra~Hv~ 234 (321)
+++|++.+ +.+..+... .....++|++|++
T Consensus 222 --~~lr~~~~-----------------------------~~~~~~~~~-------------------~~~~~~~r~~h~~ 251 (363)
T PRK00555 222 --SSLRAVQD-----------------------------RGLAALGAI-------------------ADPIDARRARHVL 251 (363)
T ss_pred --cchhcCCH-----------------------------HHHHHHHhc-------------------CChHHHHHHHHHH
Confidence 25776543 112111100 0115689999999
Q ss_pred hHhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhhhhcCCCCHHhH-HHHHHHHhcccCCCcc
Q 020779 235 SEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECRYMHDC-AFHIFLHFFVPMNSKI 299 (321)
Q Consensus 235 tE~~RV~~~~~aL~~~d~~~~~~~~lG~LMn~SH~Slr~~ye~ScpEl~-~~~~~~~~~~~~~~~~ 299 (321)
+|+.||.+++++|+++| ++.||++|++||.++|++|+|||||+| +++.+++. +-.-.|+
T Consensus 252 ~e~~~v~~~~~al~~gd-----~~~lg~lm~~~h~~lr~~~~vS~~~ld~l~~~a~~~-Ga~Gakl 311 (363)
T PRK00555 252 TENQRVLDFAAALADSD-----FTAAGQLLTASHASMRDDFEITTERIDLIADSAVRA-GALGARM 311 (363)
T ss_pred HHHHHHHHHHHHHHcCC-----HHHHHHHHHHhhHHHHhhcCCCChhHHHHHHHHHhc-CCeEEEE
Confidence 99999999999999999 999999999999999999999999986 66677763 4444444
No 10
>PRK03817 galactokinase; Provisional
Probab=100.00 E-value=1.3e-35 Score=287.45 Aligned_cols=214 Identities=27% Similarity=0.337 Sum_probs=186.9
Q ss_pred CccEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH-hhCCCCCcccceeeeeccCCceEEe
Q 020779 12 FQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSGFAELI 90 (321)
Q Consensus 12 ~~G~~i~I~s~IP~gsGLsSSAAl~VA~~~Al~~l~g~~ls~~ela~la~~aE~-~~G~~~G~mDq~a~~~g~~g~~l~i 90 (321)
.+|+++.|.|+||+|+|||||||+++|++.|++.++|.++++++++++|+++|+ +.|+|+|+|||+++++|+.++++++
T Consensus 84 ~~~~~i~i~s~iP~~~GLgSSaa~~va~~~al~~~~~~~~~~~~l~~~a~~~E~~~~g~~~g~~D~~~~~~g~~~~~~~~ 163 (351)
T PRK03817 84 VGGVKGKVSSNLPIGAGLSSSASLEVAVAYALNEAYNLNLSKLELALLAREAENEFVGVPCGIMDQFAVAFGKKDHAIFL 163 (351)
T ss_pred CCCeEEEEeCCCCCCCCcCcHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcccccCCCCcCchhhheeeccCCEEEEE
Confidence 469999999999999999999999999999999999999999999999999998 9999999999999999999999999
Q ss_pred eeCCCeeEEeecCCCceEEEEecCccchhhcccccchHHHHHHHHHHHHHHHHHhCCCchhhhcccCcchhhHhHHhhhh
Q 020779 91 DFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFA 170 (321)
Q Consensus 91 d~~~~~~~~i~~p~~~~~vv~~S~v~~~k~~~a~~~Yn~Rv~Ec~~Aa~~L~~~~gi~~~~~~~~~~~Lrdv~~~~~~~~ 170 (321)
|+.+..+.++++|.++.|++++|+. ++.+.+..||.|+.+|+.+++.|+.. +++++..
T Consensus 164 ~~~~~~~~~~~~~~~~~~vv~~sg~---~~~~~~~~~~~~~~~~~~~~~~l~~~-------------~~~~~~~------ 221 (351)
T PRK03817 164 DTMTLEYEYVPFPEDYEILVFDTGV---KRELASSEYNERRQECEEALKILGKK-------------SSKEVTE------ 221 (351)
T ss_pred ecCCCceEEEecCCCcEEEEEeCCC---ccccccchhHHHHHHHHHHHHHhCcc-------------chhcCCH------
Confidence 9998888899999999999999998 57777889999999999999988653 4544322
Q ss_pred cCCCCCCcHHHHHHhhccCCCCHHHHHHHhhhhhhHHhhccCCchhhhhhhhhhhhhhhhhhhhhHhHHHHHHHHHHhcC
Q 020779 171 CKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSN 250 (321)
Q Consensus 171 ~~~~~~~~~~~v~~~l~~~~~t~eel~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~Ra~Hv~tE~~RV~~~~~aL~~~ 250 (321)
+++..+ + ..+++|+.|+++|++||.+++.+|+++
T Consensus 222 -----------------------~~~~~l-----~------------------~~~~~~~~~~v~e~~r~~~~~~al~~~ 255 (351)
T PRK03817 222 -----------------------EDLSKL-----P------------------PLLRKRAGYVLRENERVLKVRDALKEG 255 (351)
T ss_pred -----------------------HHHHhC-----C------------------HHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 121110 1 146889999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHhhhhhhhhcCCCCHHhH-HHHHHHHhcccCCCcc
Q 020779 251 LSEEDKLKKLGDLMNDSHHSCSVLYECRYMHDC-AFHIFLHFFVPMNSKI 299 (321)
Q Consensus 251 d~~~~~~~~lG~LMn~SH~Slr~~ye~ScpEl~-~~~~~~~~~~~~~~~~ 299 (321)
| ++.||++|++||.++++.|++||||+| +++++++. +-.-.|+
T Consensus 256 d-----~~~lg~l~~~s~~~l~~~~~~s~p~ld~l~~~a~~~-GalGakl 299 (351)
T PRK03817 256 D-----IETLGELLTESHWDLADNYEVSCEELDFFVEFALEL-GAYGARL 299 (351)
T ss_pred C-----HHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHc-CCCEEEE
Confidence 9 999999999999999999999999974 77788774 4444444
No 11
>TIGR00549 mevalon_kin mevalonate kinase. Paracoccus exhibits two genes within the phosphomevalonate/mevalonate kinase family, one of which falls between trusted and noise cutoffs of this model. The degree of divergence is high, but if the trees created from this model are correct, the proper names of these genes have been swapped.
Probab=99.89 E-value=2.6e-22 Score=187.37 Aligned_cols=176 Identities=20% Similarity=0.141 Sum_probs=133.2
Q ss_pred ccEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH-hhCCCCCcccceeeeeccCCceEEee
Q 020779 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSGFAELID 91 (321)
Q Consensus 13 ~G~~i~I~s~IP~gsGLsSSAAl~VA~~~Al~~l~g~~ls~~ela~la~~aE~-~~G~~~G~mDq~a~~~g~~g~~l~id 91 (321)
.|+++.|.|+||+|+|||||||+++|++.|++++++.++++++++++|+.+|+ ++|.||| +||+++++| +++++|
T Consensus 77 ~~~~i~i~s~iP~g~GLGSSaa~~va~~~al~~~~~~~~~~~~l~~~a~~~E~~~~G~~sG-~D~~~~~~G---g~~~~~ 152 (273)
T TIGR00549 77 PPLEIEIDSEIPPGRGLGSSAAVAVALIRALADYFGSELSKEELAKLANEAEKIAHGKPSG-IDTATSTYG---GPVYFE 152 (273)
T ss_pred CCEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCch-HhHHHHhcC---CeEEEE
Confidence 35999999999999999999999999999999999999999999999999999 9999999 599999996 567777
Q ss_pred eCCCeeEEeecCCCceEEEEecCccchhhcccccchHHHHHHHHHHHHHHHHHhCCCchhhhcccCcchhhHhHHhhhhc
Q 020779 92 FNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFAC 171 (321)
Q Consensus 92 ~~~~~~~~i~~p~~~~~vv~~S~v~~~k~~~a~~~Yn~Rv~Ec~~Aa~~L~~~~gi~~~~~~~~~~~Lrdv~~~~~~~~~ 171 (321)
..... ..++.|.+..+++++|+. ++.+. +.. +.+.. +++..+
T Consensus 153 ~~~~~-~~~~~~~~~~lvl~~tg~---~~~T~--~~~----------~~v~~---------------~~~~~~------- 194 (273)
T TIGR00549 153 KGEGE-FTKLISLDGYFVIADTGV---SGSTK--EAV----------ARVRQ---------------LLERFP------- 194 (273)
T ss_pred cCCCc-eeeccCCCeEEEEEECCC---CCcHH--HHH----------HHHHH---------------HHHhCH-------
Confidence 65432 344445578999999998 45542 111 11111 000000
Q ss_pred CCCCCCcHHHHHHhhccCCCCHHHHHHHhhhhhhHHhhccCCchhhhhhhhhhhhhhhhhhhhhHhHHHHHHHHHHhcCC
Q 020779 172 KNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNL 251 (321)
Q Consensus 172 ~~~~~~~~~~v~~~l~~~~~t~eel~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~Ra~Hv~tE~~RV~~~~~aL~~~d 251 (321)
+... ..+++. ..++.+++++|+++|
T Consensus 195 ----------------------~~~~---------------------------~~~~~~------~~~~~~~~~al~~~d 219 (273)
T TIGR00549 195 ----------------------ELID---------------------------SIMDAI------GELTLEAKAALQDGD 219 (273)
T ss_pred ----------------------HHHH---------------------------HHHHHH------HHHHHHHHHHHHhCC
Confidence 0100 011121 247889999999999
Q ss_pred CChHHHHHHHHHHHHhhhhhhhhcCCCCHHh-HHHHHHHHh
Q 020779 252 SEEDKLKKLGDLMNDSHHSCSVLYECRYMHD-CAFHIFLHF 291 (321)
Q Consensus 252 ~~~~~~~~lG~LMn~SH~Slr~~ye~ScpEl-~~~~~~~~~ 291 (321)
++.||++|+++|..+++ +.+||||+ ++++.+++.
T Consensus 220 -----~~~lg~l~~~~~~~l~~-~~vs~p~l~~l~~~~~~~ 254 (273)
T TIGR00549 220 -----VESLGELMNINQGLLKA-LGVSHPKLDQLVETARKA 254 (273)
T ss_pred -----HHHHHHHHHHHHHHHHH-cCCCcHHHHHHHHHHHHC
Confidence 99999999999998865 79999997 577777763
No 12
>PTZ00298 mevalonate kinase; Provisional
Probab=99.86 E-value=1e-20 Score=182.10 Aligned_cols=183 Identities=16% Similarity=0.125 Sum_probs=136.8
Q ss_pred ccEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH-hhCCCCCcccceeeeeccCCceEEee
Q 020779 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSGFAELID 91 (321)
Q Consensus 13 ~G~~i~I~s~IP~gsGLsSSAAl~VA~~~Al~~l~g~~ls~~ela~la~~aE~-~~G~~~G~mDq~a~~~g~~g~~l~id 91 (321)
+|+++.|.++||+|+|||||||+++|++.|+++++|.++++++++++++.+|+ ++|.|+| +|+.++++| +++++.
T Consensus 93 ~g~~I~I~~~IP~gaGLGSSsA~avA~l~al~~l~~~~ls~~el~~~a~~~E~~~~g~~sG-~D~~~~~~G---g~~~~~ 168 (328)
T PTZ00298 93 DGLKMHLGGPLVPSSGIGASASDVVSLSRALSELYQLNLTEEEVNLSAFVGEGGYHGTPSG-ADNTAATYG---GLISYR 168 (328)
T ss_pred CCeEEEEECCCCCCCCchHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCh-HHHHHHHcC---CeEEEe
Confidence 59999999999999999999999999999999999999999999999999999 9999999 499998886 455555
Q ss_pred eCCC--eeEEeecCCCceEEEEecCccchhhcccccchHHHHHHHHHHHHHHHHHhCCCchhhhcccCcchhhHhHHhhh
Q 020779 92 FNPI--RTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAF 169 (321)
Q Consensus 92 ~~~~--~~~~i~~p~~~~~vv~~S~v~~~k~~~a~~~Yn~Rv~Ec~~Aa~~L~~~~gi~~~~~~~~~~~Lrdv~~~~~~~ 169 (321)
..+. .++++++|.++.+++++|++ ++.+. ..|.. +.+ +++..+
T Consensus 169 ~~~g~~~~~~l~~~~~~~lvv~~~~~---~~sT~-~~~~~-----------v~~---------------~~~~~p----- 213 (328)
T PTZ00298 169 RVNGKSVFKRIAFQQPLYLVVCSTGI---TASTT-KVVGD-----------VRK---------------LKENQP----- 213 (328)
T ss_pred cCCCccceeEecCCCCCeEEEEECCC---chhHH-HHHHH-----------HHH---------------HHhcCH-----
Confidence 4332 46677777788999999998 34441 12221 100 010000
Q ss_pred hcCCCCCCcHHHHHHhhccCCCCHHHHHHHhhhhhhHHhhccCCchhhhhhhhhhhhhhhhhhhhhHhHHHHHHHHHHhc
Q 020779 170 ACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSS 249 (321)
Q Consensus 170 ~~~~~~~~~~~~v~~~l~~~~~t~eel~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~Ra~Hv~tE~~RV~~~~~aL~~ 249 (321)
+.+. .+.+|..| ++.++..+|++
T Consensus 214 ------------------------~~~~---------------------------~~~~~~~~------~~~~~~~al~~ 236 (328)
T PTZ00298 214 ------------------------TWFN---------------------------RLLENYNA------CVSEAKEALQK 236 (328)
T ss_pred ------------------------HHHH---------------------------HHHHHHHH------HHHHHHHHHHc
Confidence 0000 12344444 35678889999
Q ss_pred CCCChHHHHHHHHHHHHhhhhhhhhcCCCCHHh-HHHHHHHHhcccCCCc
Q 020779 250 NLSEEDKLKKLGDLMNDSHHSCSVLYECRYMHD-CAFHIFLHFFVPMNSK 298 (321)
Q Consensus 250 ~d~~~~~~~~lG~LMn~SH~Slr~~ye~ScpEl-~~~~~~~~~~~~~~~~ 298 (321)
+| ++.+|++|+++|..+++ +.+|||++ ++++.+++. +..-.|
T Consensus 237 ~d-----~~~lg~~m~~~~~~l~~-~~v~~p~l~~l~~~~~~~-Ga~gak 279 (328)
T PTZ00298 237 GN-----LFRVGELMNANHDLCQK-LTVSCRELDSIVQTCRTY-GALGAK 279 (328)
T ss_pred CC-----HHHHHHHHHHHHHHHHH-hCCCcHHHHHHHHHHHhC-CCceeE
Confidence 99 99999999999999985 68999998 577777663 333334
No 13
>PLN02677 mevalonate kinase
Probab=99.83 E-value=2.6e-19 Score=175.84 Aligned_cols=99 Identities=26% Similarity=0.315 Sum_probs=86.1
Q ss_pred CccEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCC-CC-------------CHHHHHHHHHHHHH-hhCCCCCcccc
Q 020779 12 FQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGV-EV-------------PKKEIAQLTCECEQ-FIGTQSGGMDQ 76 (321)
Q Consensus 12 ~~G~~i~I~s~IP~gsGLsSSAAl~VA~~~Al~~l~g~-~l-------------s~~ela~la~~aE~-~~G~~~G~mDq 76 (321)
..|+++.|.|+||+|+|||||||++||++.|+..+++. ++ +.+++.++|+.+|+ ++|.|||+ |+
T Consensus 127 ~~~~~i~I~S~lP~GaGLGSSAAv~Va~~~AL~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~A~~~E~~~hG~pSGi-D~ 205 (387)
T PLN02677 127 FNPATVVVTSELPLGSGLGSSAAFCVALSAALLAASDSISVSTGGNGWSSLDETDLELVNKWAFEGEKIIHGKPSGI-DN 205 (387)
T ss_pred CCCeEEEEEccCCCCCCccHHHHHHHHHHHHHHHHhCCcccccccccccccChhHHHHHHHHHHHHHHHHhCCCCch-hH
Confidence 56899999999999999999999999999999999983 22 23577889999999 99999996 99
Q ss_pred eeeeeccCCceEEeeeCCCeeEEeecCCCceEEEEecCcc
Q 020779 77 AISIMAKSGFAELIDFNPIRTTDVQLPAGGTFVVAHSLAE 116 (321)
Q Consensus 77 ~a~~~g~~g~~l~id~~~~~~~~i~~p~~~~~vv~~S~v~ 116 (321)
+++++|+ +++|++..+++++.|.++.++|+||+++
T Consensus 206 a~s~~Gg-----~I~f~~~~~~~l~~~~~l~llv~dTgv~ 240 (387)
T PLN02677 206 TVSTYGN-----MIKFKSGELTRLQSNMPLKMLITNTRVG 240 (387)
T ss_pred HHHhcCC-----eEEEcCCCceecCCCCCceEEEEECCCC
Confidence 9999983 5666777778888777899999999994
No 14
>TIGR01220 Pmev_kin_Gr_pos phosphomevalonate kinase, ERG8-type, Gram-positive branch. This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found - the animal type and this ERG8 type. This model represents the low GC Gram-positive organism forms of the ERG8 type of phosphomevalonate kinase.
Probab=99.82 E-value=5.9e-19 Score=171.96 Aligned_cols=180 Identities=16% Similarity=0.118 Sum_probs=133.2
Q ss_pred cCccEEEEEEeCCCCC----CCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH-hhCCCCCcccceeeeeccCC
Q 020779 11 KFQLFNHINSLFFNLG----SGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSG 85 (321)
Q Consensus 11 ~~~G~~i~I~s~IP~g----sGLsSSAAl~VA~~~Al~~l~g~~ls~~ela~la~~aE~-~~G~~~G~mDq~a~~~g~~g 85 (321)
+.+|+++.|.|++|++ +|||||||++||++.|++.++|.++++++++++|+.+|+ ++|.++|. ||+++++|
T Consensus 97 ~~~g~~~~i~s~ip~~~g~k~GLGSSAA~~Va~~~Al~~~~~~~l~~~~l~~lA~~~E~~~~g~~sg~-D~~a~~~G--- 172 (358)
T TIGR01220 97 KLPALHLSVSSRLDEADGRKYGLGSSGAVTVATVKALNAFYDLELSNDEIFKLAMLATAELQPKGSCG-DIAASTYG--- 172 (358)
T ss_pred CCCceEEEEecCCCCcCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhhCCCCCcc-hhhhhhhC---
Confidence 3579999999999994 699999999999999999999999999999999999998 88888774 99999997
Q ss_pred ceEEe-ee----------------------CCCeeEEeecCCCceEEEEecCccchhhcccccchHHHHHHHHHHHHHHH
Q 020779 86 FAELI-DF----------------------NPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLA 142 (321)
Q Consensus 86 ~~l~i-d~----------------------~~~~~~~i~~p~~~~~vv~~S~v~~~k~~~a~~~Yn~Rv~Ec~~Aa~~L~ 142 (321)
+++.+ .+ .+..++++++|+++++++++|+++ +.+ ++.-.++.+.. .
T Consensus 173 G~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~l~v~~tg~~---~~T--~~~v~~V~~~~------~ 241 (358)
T TIGR01220 173 GWIAYSTFDHDWVLQLARRVGVDRTLKAPWPGLSIRPLPAPKGLTLLIGWTGSP---AST--ASLVSDVHRRK------W 241 (358)
T ss_pred CEEEEecCCHHHHhhhhhccchhhhhccCCCccceeECCCCCCCEEEEEeCCCC---cCc--HHHHHHHHHHh------h
Confidence 33332 11 234578888888999999999984 443 12221111100 0
Q ss_pred HHhCCCchhhhcccCcchhhHhHHhhhhcCCCCCCcHHHHHHhhccCCCCHHHHHHHhhhhhhHHhhccCCchhhhhhhh
Q 020779 143 IKLGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAK 222 (321)
Q Consensus 143 ~~~gi~~~~~~~~~~~Lrdv~~~~~~~~~~~~~~~~~~~v~~~l~~~~~t~eel~~~~~~~~~~~~~~~~~~~~v~~~~~ 222 (321)
+. . +..+.
T Consensus 242 ~~------------------~------------------------------~~~~~------------------------ 249 (358)
T TIGR01220 242 RG------------------S------------------------------ASYQR------------------------ 249 (358)
T ss_pred cC------------------h------------------------------HHHHH------------------------
Confidence 00 0 00000
Q ss_pred hhhhhhhhhhhhhHhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhhhh-----cCCCCHHh-HHHHHHHHh
Q 020779 223 QYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVL-----YECRYMHD-CAFHIFLHF 291 (321)
Q Consensus 223 ~~~l~~Ra~Hv~tE~~RV~~~~~aL~~~d~~~~~~~~lG~LMn~SH~Slr~~-----ye~ScpEl-~~~~~~~~~ 291 (321)
..++.. .-|.+++++|+++| ++.||++|++.|.-++.+ ..+|+|++ .+++.+++.
T Consensus 250 ---~l~~~~------~i~~~~~~al~~~d-----~~~lg~~~~~~~~lL~~l~~~~~~~vs~~~l~~li~~a~~~ 310 (358)
T TIGR01220 250 ---FLETST------DCVESAITAFETGD-----ITSLQKEIRRNRQELARLDDEVGVGIETEKLKALCDAAEAY 310 (358)
T ss_pred ---HHHHHH------HHHHHHHHHHHhCC-----HHHHHHHHHHHHHHHHHhhcccCCCcCCHHHHHHHHHHhhc
Confidence 011111 12458889999999 999999999999999976 68999997 588888763
No 15
>COG1577 ERG12 Mevalonate kinase [Lipid metabolism]
Probab=99.81 E-value=2.3e-18 Score=163.91 Aligned_cols=101 Identities=26% Similarity=0.295 Sum_probs=87.9
Q ss_pred cCccEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH-hhCCCCCcccceeeeeccCCceEE
Q 020779 11 KFQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSGFAEL 89 (321)
Q Consensus 11 ~~~G~~i~I~s~IP~gsGLsSSAAl~VA~~~Al~~l~g~~ls~~ela~la~~aE~-~~G~~~G~mDq~a~~~g~~g~~l~ 89 (321)
+.+||++.|.|+||+|+|||||||+.||++.|++.++|.+++++++++++.++|. ++|.|+| +|.+++++| ++++
T Consensus 80 ~~~~~~l~I~S~iP~g~GLGSSAAVsva~i~al~~~~g~~ls~~~l~~la~~~e~~vqG~~Sg-~D~a~~~~g---g~v~ 155 (307)
T COG1577 80 SLKPFSLEIDSEIPIGAGLGSSAAVSVAVIKALSAYFGVELSPEELAKLANKVELIVQGKASG-IDIATITYG---GLVA 155 (307)
T ss_pred CCCCeEEEEecCCCCCCCccHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCCc-ccceEEEeC---CEEE
Confidence 4679999999999999999999999999999999999999999999999999999 9999999 799999996 6666
Q ss_pred eeeCCCeeEEeecCCCceEEEEecCcc
Q 020779 90 IDFNPIRTTDVQLPAGGTFVVAHSLAE 116 (321)
Q Consensus 90 id~~~~~~~~i~~p~~~~~vv~~S~v~ 116 (321)
+... ...+++.++..-.|+|.|+|++
T Consensus 156 ~~~~-~~~~~l~~~~~~~~~I~~tg~~ 181 (307)
T COG1577 156 FKKG-FDFEKLEIELLGTLVIGDTGVP 181 (307)
T ss_pred EecC-CCccccccccCCeEEEEEcCCc
Confidence 6532 3455555554338999999984
No 16
>PRK03926 mevalonate kinase; Provisional
Probab=99.79 E-value=4e-18 Score=161.68 Aligned_cols=96 Identities=26% Similarity=0.254 Sum_probs=82.4
Q ss_pred CccEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH-hhCCCCCcccceeeeeccCCceEEe
Q 020779 12 FQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSGFAELI 90 (321)
Q Consensus 12 ~~G~~i~I~s~IP~gsGLsSSAAl~VA~~~Al~~l~g~~ls~~ela~la~~aE~-~~G~~~G~mDq~a~~~g~~g~~l~i 90 (321)
.+|+++.|.++||+|+|||||||+.+|++.|+++++|.++++++++++|+++|+ +.|.++| +|++++++| |. ++.
T Consensus 73 ~~g~~i~i~~~iP~~~GLGSSsA~~~a~~~al~~~~~~~l~~~~l~~la~~~E~~~~G~~sg-~D~~~~~~G--g~-~~~ 148 (302)
T PRK03926 73 KDGVTVSITSQIPVGSGLGSSAAVTVATIGALNRLLGLGLSLEEIAKLGHKVELLVQGAASP-TDTYVSTMG--GF-VTI 148 (302)
T ss_pred CCCeEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHcCCCch-HHHHHHhcC--Ce-EEE
Confidence 359999999999999999999999999999999999999999999999999999 9999999 599999998 33 333
Q ss_pred eeCCCeeEEeecCCCceEEEEecCcc
Q 020779 91 DFNPIRTTDVQLPAGGTFVVAHSLAE 116 (321)
Q Consensus 91 d~~~~~~~~i~~p~~~~~vv~~S~v~ 116 (321)
+... ++++ +++.+++++|+.+
T Consensus 149 ~~~~----~l~~-~~~~~vl~~~~~~ 169 (302)
T PRK03926 149 PDRK----KLPF-PECGIVVGYTGSS 169 (302)
T ss_pred cCCC----cCCC-CCceEEEEECCCC
Confidence 3221 3443 3788999999983
No 17
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional
Probab=99.78 E-value=5e-18 Score=180.91 Aligned_cols=101 Identities=18% Similarity=0.079 Sum_probs=86.1
Q ss_pred ccEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhCCCCCcccceeeeeccCCceEEeee
Q 020779 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 92 (321)
Q Consensus 13 ~G~~i~I~s~IP~gsGLsSSAAl~VA~~~Al~~l~g~~ls~~ela~la~~aE~~~G~~~G~mDq~a~~~g~~g~~l~id~ 92 (321)
.|+++.|.|+||+|+|||||||++||++.|+++++|.++++++++++++.+|+.++.++|.+||+++++| +++++++
T Consensus 725 ~G~~I~i~s~IP~GsGLGSSAAlavA~l~AL~~~~g~~ls~~ela~~A~~~E~~lhg~~g~qDq~~a~~G---G~~~i~~ 801 (974)
T PRK13412 725 SGIEITLLAAIPAGSGLGTSSILAATVLGAISDFCGLAWDKNEICNRTLVLEQLLTTGGGWQDQYGGVLP---GVKLLQT 801 (974)
T ss_pred CCeEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHCCCCchhhhhhHhcC---CeEEEEe
Confidence 6999999999999999999999999999999999999999999999999999966666777999999996 6778877
Q ss_pred CCC-----eeEEeecCC------CceEEEEecCcc
Q 020779 93 NPI-----RTTDVQLPA------GGTFVVAHSLAE 116 (321)
Q Consensus 93 ~~~-----~~~~i~~p~------~~~~vv~~S~v~ 116 (321)
.+. .+++++.+. +-+++|++||++
T Consensus 802 ~~~~~~~~~v~~L~~~~~~~~eLe~~LlL~yTGit 836 (974)
T PRK13412 802 GAGFAQSPLVRWLPDSLFTQPEYRDCHLLYYTGIT 836 (974)
T ss_pred cCCcccCcceeecCcchhhhhhccCcEEEEECCCe
Confidence 651 234454432 357999999993
No 18
>COG2605 Predicted kinase related to galactokinase and mevalonate kinase [General function prediction only]
Probab=99.63 E-value=9.8e-15 Score=136.19 Aligned_cols=99 Identities=21% Similarity=0.164 Sum_probs=87.6
Q ss_pred EEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH-hhCCCCCcccceeeeeccCCceEEeeeC
Q 020779 15 FNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSGFAELIDFN 93 (321)
Q Consensus 15 ~~i~I~s~IP~gsGLsSSAAl~VA~~~Al~~l~g~~ls~~ela~la~~aE~-~~G~~~G~mDq~a~~~g~~g~~l~id~~ 93 (321)
+++...+|+|+|+|||||+|++||+..|+..+-|..+++.+||+.|...|+ .++.+.|-+||++++|| +.-++.|+
T Consensus 90 ~el~~~~D~P~GSGLGSSSa~vvaLl~a~~~~kg~~~~~~~LA~eAy~IER~~l~~~gG~QDqYaaA~G---GFnfMEf~ 166 (333)
T COG2605 90 IELHTQSDAPPGSGLGSSSAFVVALLNALHAWKGESLGPYELAREAYEIEREDLKIVGGKQDQYAAAFG---GFNFMEFR 166 (333)
T ss_pred eEEEEecCCCCCCCCCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhccccccccHHHHHhC---CceEEEEc
Confidence 899999999999999999999999999999999999999999999999998 99999999999999996 56678887
Q ss_pred CC---eeEEeecCC------CceEEEEecCcc
Q 020779 94 PI---RTTDVQLPA------GGTFVVAHSLAE 116 (321)
Q Consensus 94 ~~---~~~~i~~p~------~~~~vv~~S~v~ 116 (321)
.. .+.++++.. ..++++++||++
T Consensus 167 ~~~~V~v~pL~i~~e~~~Ele~~~lL~yTGi~ 198 (333)
T COG2605 167 GNGEVVVNPLRINRERTAELEARLLLYYTGIT 198 (333)
T ss_pred CCCcEEEeecccchhHHHHHHhceEEEEeccc
Confidence 63 345555432 578999999983
No 19
>KOG1511 consensus Mevalonate kinase MVK/ERG12 [Lipid transport and metabolism]
Probab=99.60 E-value=4.4e-14 Score=134.46 Aligned_cols=98 Identities=23% Similarity=0.290 Sum_probs=81.4
Q ss_pred EEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCC--------HH---HHHHHHHHHHH-hhCCCCCcccceeeeec
Q 020779 15 FNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVP--------KK---EIAQLTCECEQ-FIGTQSGGMDQAISIMA 82 (321)
Q Consensus 15 ~~i~I~s~IP~gsGLsSSAAl~VA~~~Al~~l~g~~ls--------~~---ela~la~~aE~-~~G~~~G~mDq~a~~~g 82 (321)
+++.|.|++|+|+|||||||+.|++++++..++|.--+ .. -+-+.|..+|+ ++|+|+| .|+++|++|
T Consensus 132 ~~v~v~SelP~GaGLGSSAa~sv~lAtall~~~g~i~~p~~~~~~~e~~l~Li~~WAf~gE~~iHGtpSG-iDnaV~t~G 210 (397)
T KOG1511|consen 132 LTVVVDSELPLGAGLGSSAAISVALATALLRLAGLIPPPGSNLSLAENDLALINKWAFEGEKCIHGTPSG-IDNAVCTYG 210 (397)
T ss_pred eEEEEeccCCCcCCcchhHHHHHHHHHHHHHHcccCCCCcchhccccchHHHHHHHHhccceeecCCCcc-cchhhhccC
Confidence 99999999999999999999999999999999886322 23 33467899999 9999999 599999997
Q ss_pred cCCceEEeeeCCC-eeEEeecCCCceEEEEecCccch
Q 020779 83 KSGFAELIDFNPI-RTTDVQLPAGGTFVVAHSLAESL 118 (321)
Q Consensus 83 ~~g~~l~id~~~~-~~~~i~~p~~~~~vv~~S~v~~~ 118 (321)
+ +|.|.+. +++.+...+.++++++||.+|+|
T Consensus 211 ---g--~i~f~kg~~~~~Lk~~~~L~illtnTrv~Rn 242 (397)
T KOG1511|consen 211 ---G--LISFKKGVEIESLKHLPPLRILLTNTRVPRN 242 (397)
T ss_pred ---c--eEEeecCccceecccCCCceEEEEccccCcc
Confidence 3 4556665 77777776789999999999744
No 20
>PF00288 GHMP_kinases_N: GHMP kinases N terminal domain; InterPro: IPR006204 The galacto- (2.7.1.6 from EC), homoserine (2.7.1.39 from EC), mevalonate (2.7.1.36 from EC) and phosphomevalonate (2.7.4.2 from EC) kinases contain, in their N-terminal section, a conserved Gly/Ser-rich region which is probably involved in the binding of ATP [, ]. This group of kinases has been called 'GHMP' (from the first letter of their substrates).; GO: 0005524 ATP binding, 0016301 kinase activity, 0016310 phosphorylation; PDB: 3F0N_B 1PIE_A 2AJ4_A 1K47_E 3GON_A 2R3V_C 3HUL_A 1KVK_A 2R42_A 3D4J_A ....
Probab=99.56 E-value=4.8e-15 Score=110.55 Aligned_cols=66 Identities=36% Similarity=0.497 Sum_probs=61.2
Q ss_pred EEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhCCCCCcccceeeeec
Q 020779 16 NHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMA 82 (321)
Q Consensus 16 ~i~I~s~IP~gsGLsSSAAl~VA~~~Al~~l~g~~ls~~ela~la~~aE~~~G~~~G~mDq~a~~~g 82 (321)
++.|.|+||+++|||||||+.+|++.+++++++.++++++++++++.+|++.|.++| +|+.++++|
T Consensus 1 ~i~i~s~iP~~~GLgSSaa~~~a~~~a~~~~~~~~~~~~~l~~~a~~~e~~~g~~~g-~d~~~~~~G 66 (67)
T PF00288_consen 1 DIEIDSNIPPGSGLGSSAALAVALAAALNKLFGLPLSKEELAKLAQEAERYIGKPSG-IDDAASAYG 66 (67)
T ss_dssp EEEEEESSTTTSSSSHHHHHHHHHHHHHHHHTTTSSBHHHHHHHHHHHHHHCSSSHS-HHHHHHHHC
T ss_pred CeEEEccCCCCCcccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcCCCCh-hhHHHHHhC
Confidence 689999999999999999999999999999999999999999999999993399977 677888887
No 21
>PLN02451 homoserine kinase
Probab=99.54 E-value=3.8e-13 Score=131.82 Aligned_cols=99 Identities=24% Similarity=0.321 Sum_probs=83.0
Q ss_pred CccEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH-hhCCCCCccccee-eeeccCCceEE
Q 020779 12 FQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQAI-SIMAKSGFAEL 89 (321)
Q Consensus 12 ~~G~~i~I~s~IP~gsGLsSSAAl~VA~~~Al~~l~g~~ls~~ela~la~~aE~-~~G~~~G~mDq~a-~~~g~~g~~l~ 89 (321)
.+|+++.|.++||+|+|||||||..+|++.|+++++|.+++++++++++.++|. +.|.. +||++ +++| |.++.
T Consensus 132 ~~gv~I~i~k~IP~g~GLGSSaA~avA~l~aln~l~g~~ls~~eL~~la~~~E~~v~g~h---~Dnva~a~~G--G~v~~ 206 (370)
T PLN02451 132 SVGLSLSLHKGLPLGSGLGSSAASAAAAAVAVNELFGSPLGKDDLVLAGLESEAKVSGYH---ADNIAPALMG--GFVLI 206 (370)
T ss_pred CCCEEEEEeCCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhchhcCCC---ccchhHhhcC--CEEEE
Confidence 369999999999999999999999999999999999999999999999999998 77752 79986 5776 33333
Q ss_pred eeeCCCeeEEeecC--CCceEEEEecCc
Q 020779 90 IDFNPIRTTDVQLP--AGGTFVVAHSLA 115 (321)
Q Consensus 90 id~~~~~~~~i~~p--~~~~~vv~~S~v 115 (321)
.+..+.+..++++| +++.++++.+++
T Consensus 207 ~~~~~~~~~~~~~p~~~~~~~Vlv~P~~ 234 (370)
T PLN02451 207 RSYEPLHLIPLRFPSAKDLFFVLVSPDF 234 (370)
T ss_pred EecCCCeEEEeecCCCCCeEEEEEcCCC
Confidence 34445566677776 579999999987
No 22
>TIGR01920 Shik_kin_archae shikimate kinase. This model represents the shikimate kinase (SK) gene found in archaea which is only distantly related to homoserine kinase (thrB) and not atr all to the bacterial SK enzyme. The SK from M. janaschii has been overexpressed in E. coli and characterized. SK catalyzes the fifth step of the biosynthesis of chorismate from D-erythrose-4-phosphate and phosphoenolpyruvate.
Probab=99.38 E-value=4.6e-12 Score=118.63 Aligned_cols=99 Identities=23% Similarity=0.158 Sum_probs=82.1
Q ss_pred ccEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH-hh-CCCCCcccceeeeeccCCceEEe
Q 020779 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FI-GTQSGGMDQAISIMAKSGFAELI 90 (321)
Q Consensus 13 ~G~~i~I~s~IP~gsGLsSSAAl~VA~~~Al~~l~g~~ls~~ela~la~~aE~-~~-G~~~G~mDq~a~~~g~~g~~l~i 90 (321)
+|+++.+.++||+++|||||||+.+|++.|++++++.++++++++++++++|+ .. +.++|.+|++++++| ++++.
T Consensus 63 ~g~~i~i~s~iP~~~GLGSSaA~~~a~~~al~~~~~~~l~~~~l~~la~~~e~~~~~~~~~~~~D~~~~~~g---G~~~~ 139 (261)
T TIGR01920 63 DGLEVEVESEIPAGSGLKSSSALVNALVEAVLKAKGVEIDDIDILRLGARLSKDAGLSVTGAFDDAAASYLG---GIVIT 139 (261)
T ss_pred CCEEEEEecCCCCCCCcchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHhC---CEEEE
Confidence 69999999999999999999999999999999999999999999999999998 33 356787899999996 56777
Q ss_pred eeCCCeeE-EeecCCCceEEEEecCc
Q 020779 91 DFNPIRTT-DVQLPAGGTFVVAHSLA 115 (321)
Q Consensus 91 d~~~~~~~-~i~~p~~~~~vv~~S~v 115 (321)
+.++.+.. ..++| +..++++.++.
T Consensus 140 ~~~~~~~~~~~~~~-~~~~vv~~p~~ 164 (261)
T TIGR01920 140 DNRRMKILKRDKLE-GCTAAVLVPKE 164 (261)
T ss_pred eCCCceEEEecCCC-CceEEEEECCC
Confidence 77655443 33433 45677777765
No 23
>PRK01212 homoserine kinase; Provisional
Probab=99.34 E-value=2.4e-11 Score=115.40 Aligned_cols=93 Identities=23% Similarity=0.168 Sum_probs=75.5
Q ss_pred ccEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH-hhCCCCCcccceeeeeccCCceEEe-
Q 020779 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSGFAELI- 90 (321)
Q Consensus 13 ~G~~i~I~s~IP~gsGLsSSAAl~VA~~~Al~~l~g~~ls~~ela~la~~aE~-~~G~~~G~mDq~a~~~g~~g~~l~i- 90 (321)
+|++|.|.++||.++|||||||..+|++.|+++++|.+++.++++++|.+.|. ..++|. +++| +..+.
T Consensus 80 ~~~~I~i~k~IP~~~GLGssSa~aaA~l~al~~l~~~~l~~~eL~~~a~~~e~~~ddv~~-------~l~G---G~~~~~ 149 (301)
T PRK01212 80 PGLRIELEKNIPLGRGLGSSAASIVAGLVAANELAGLPLSKEELLQLATEGEGHPDNVAP-------ALLG---GLVLAL 149 (301)
T ss_pred CCeEEEEEeCCCCCCCCcHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCHHHHHH-------HHhC---CEEEEE
Confidence 68999999999999999999999999999999999999999999999999996 333333 3443 23333
Q ss_pred eeCCCeeEEeecCCCceEEEEecCc
Q 020779 91 DFNPIRTTDVQLPAGGTFVVAHSLA 115 (321)
Q Consensus 91 d~~~~~~~~i~~p~~~~~vv~~S~v 115 (321)
+.....+++++.|+++.+++++++.
T Consensus 150 ~g~g~~~~~~~~~~~~~~vlv~p~~ 174 (301)
T PRK01212 150 EENGVISVKIPVFDDLKWVVAIPNI 174 (301)
T ss_pred ECCceEEEEecCCCCeEEEEEECCC
Confidence 3444567778777788899999876
No 24
>PRK01123 shikimate kinase; Provisional
Probab=99.29 E-value=1.3e-11 Score=116.61 Aligned_cols=98 Identities=16% Similarity=0.077 Sum_probs=80.7
Q ss_pred ccEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH-hhC-CCCCcccceeeeeccCCceEEe
Q 020779 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIG-TQSGGMDQAISIMAKSGFAELI 90 (321)
Q Consensus 13 ~G~~i~I~s~IP~gsGLsSSAAl~VA~~~Al~~l~g~~ls~~ela~la~~aE~-~~G-~~~G~mDq~a~~~g~~g~~l~i 90 (321)
+|+++.|.++||+++|||||||..+|++.|+++++|.++++++++++|..+|+ ..+ ...+.+|++++++| ++++.
T Consensus 74 ~~~~i~i~s~IP~~~GLGSSaA~~va~~~a~~~~~~~~l~~~el~~la~~~e~~~~~~~~g~~~d~~~~~~G---G~~~~ 150 (282)
T PRK01123 74 YGATVRTKSEIPLASGLKSSSAAANATVLATLDALGEDLDDLDILRLGVKASRDAGVTVTGAFDDACASYFG---GVTVT 150 (282)
T ss_pred CCEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhccccccccCchhHHHHHHhC---CEEEE
Confidence 48999999999999999999999999999999999999999999999999998 544 34566788889996 45666
Q ss_pred eeCCCe-eEEeecCCCceEEEEecCc
Q 020779 91 DFNPIR-TTDVQLPAGGTFVVAHSLA 115 (321)
Q Consensus 91 d~~~~~-~~~i~~p~~~~~vv~~S~v 115 (321)
|..... +.+++ .++.++|+.++.
T Consensus 151 ~~~~~~~~~~~~--~~~~~vv~~p~~ 174 (282)
T PRK01123 151 DNREMKLLKRDE--VELDVLVLIPPE 174 (282)
T ss_pred cCCCceEEEEec--CCcEEEEEECCC
Confidence 644332 23333 358899999987
No 25
>PRK02534 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.19 E-value=3.3e-10 Score=108.42 Aligned_cols=91 Identities=18% Similarity=0.116 Sum_probs=73.4
Q ss_pred ccEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhCCCCCcccceeeeeccCCceEEeee
Q 020779 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 92 (321)
Q Consensus 13 ~G~~i~I~s~IP~gsGLsSSAAl~VA~~~Al~~l~g~~ls~~ela~la~~aE~~~G~~~G~mDq~a~~~g~~g~~l~id~ 92 (321)
+|+++.|.++||.|+|||||||..+|++.|++.+++.++++++++++|.+.| .|-..+++| |.+ +...
T Consensus 85 ~~~~i~i~~~IP~~~GLGSssa~~~A~~~al~~~~~~~l~~~~l~~~a~~~g---------~dv~~~~~G--G~~-~~~~ 152 (312)
T PRK02534 85 GGVDITLEKRIPIGAGLAGGSTDAAAVLVGLNLLWGLGLTQPELESLAAELG---------SDVPFCIAG--GTQ-LCFG 152 (312)
T ss_pred CCeEEEEecCCCCcCCccHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhC---------CCCcEEeEC--CeE-EEEC
Confidence 6899999999999999999999999999999999999999999999998876 254566665 332 2222
Q ss_pred CCCeeEEeecCCCceEEEE-ecCc
Q 020779 93 NPIRTTDVQLPAGGTFVVA-HSLA 115 (321)
Q Consensus 93 ~~~~~~~i~~p~~~~~vv~-~S~v 115 (321)
+....++++.|+++.++++ +++.
T Consensus 153 ~g~~~~~~~~~~~~~~vv~~~p~~ 176 (312)
T PRK02534 153 RGEILEPLPDLDGLGVVLAKYPSL 176 (312)
T ss_pred CCCEeEECCCCCCcEEEEEECCCC
Confidence 3334677777778888887 7887
No 26
>PRK03188 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.14 E-value=9.4e-10 Score=104.63 Aligned_cols=90 Identities=16% Similarity=0.108 Sum_probs=69.4
Q ss_pred ccEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhCCCCCcccceeeeeccCCceEEeee
Q 020779 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 92 (321)
Q Consensus 13 ~G~~i~I~s~IP~gsGLsSSAAl~VA~~~Al~~l~g~~ls~~ela~la~~aE~~~G~~~G~mDq~a~~~g~~g~~l~id~ 92 (321)
+|+++.|.++||+++|||||||..+|++.|+++++|.++++++++++|.+.| .|-.++++| +.++.+.
T Consensus 82 ~~~~I~i~s~IP~~~GLGSSSA~a~A~l~al~~~~g~~ls~~el~~~a~~ig---------~dv~~~~~G---G~~~~~~ 149 (300)
T PRK03188 82 PDVHLHIDKGIPVAGGMAGGSADAAAALVACDALWGLGLSRDELLELAAELG---------SDVPFALLG---GTALGTG 149 (300)
T ss_pred CCeEEEEEcCCcccCcchHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhC---------CCcchhhcC---CeEEEEe
Confidence 5899999999999999999999999999999999999999999999998874 355566664 4555444
Q ss_pred CCCeeEEeecCCCceEEEEecC
Q 020779 93 NPIRTTDVQLPAGGTFVVAHSL 114 (321)
Q Consensus 93 ~~~~~~~i~~p~~~~~vv~~S~ 114 (321)
+.....+++.+.++.++++.++
T Consensus 150 ~g~~~~~~~~~~~~~~~lv~p~ 171 (300)
T PRK03188 150 RGEQLAPVLARGTFHWVLAFAD 171 (300)
T ss_pred cCCEEEECCCCCCcEEEEEeCC
Confidence 4344555555455555555443
No 27
>PRK00128 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.14 E-value=2e-10 Score=108.32 Aligned_cols=91 Identities=15% Similarity=0.116 Sum_probs=76.2
Q ss_pred ccEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhCCCCCcccceeeeeccCCceEEeee
Q 020779 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 92 (321)
Q Consensus 13 ~G~~i~I~s~IP~gsGLsSSAAl~VA~~~Al~~l~g~~ls~~ela~la~~aE~~~G~~~G~mDq~a~~~g~~g~~l~id~ 92 (321)
+|+++.|.++||+|+|||||||..+|++.|+++++|.++++++++++|.++| .|..++++| +..+.+.
T Consensus 83 ~~~~i~i~~~iP~~~GLGSSsa~a~a~~~al~~~~~~~l~~~~l~~~a~~~g---------~dv~~~~~G---g~~~~~~ 150 (286)
T PRK00128 83 QGVSITIDKNIPVAAGLAGGSSDAAATLRGLNKLWNLGLSLEELAEIGLEIG---------SDVPFCIYG---GTALATG 150 (286)
T ss_pred CCeEEEEEcCCCccccchHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHhC---------CCCCeEeeC---CeEEEec
Confidence 5899999999999999999999999999999999999999999999998885 377777775 4555554
Q ss_pred CCCeeEEeecCCCceEEEEecCc
Q 020779 93 NPIRTTDVQLPAGGTFVVAHSLA 115 (321)
Q Consensus 93 ~~~~~~~i~~p~~~~~vv~~S~v 115 (321)
+.....+++.+++..+++++++.
T Consensus 151 ~g~~~~~~~~~~~~~~vv~~p~~ 173 (286)
T PRK00128 151 RGEKITPLKSPPSCWVVLAKPDI 173 (286)
T ss_pred CCcccccCCCCCCcEEEEEcCCC
Confidence 44445666655678899999987
No 28
>TIGR00191 thrB homoserine kinase. P.aeruginosa homoserine kinase seems not to be homologous (see PROSITE:PDOC0054)
Probab=99.14 E-value=2.3e-10 Score=108.99 Aligned_cols=94 Identities=19% Similarity=0.182 Sum_probs=76.1
Q ss_pred ccEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhCCCCCcccce-eeeeccCCceEEee
Q 020779 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQA-ISIMAKSGFAELID 91 (321)
Q Consensus 13 ~G~~i~I~s~IP~gsGLsSSAAl~VA~~~Al~~l~g~~ls~~ela~la~~aE~~~G~~~G~mDq~-a~~~g~~g~~l~id 91 (321)
+|+++.|.++||+|+|||||||..+|++.|+++++|.++++++++++|.++|. -.|+. ++++| +..+..
T Consensus 79 ~g~~i~i~~~IP~~~GLGSSsa~~vA~l~a~~~l~~~~l~~~el~~~a~~~E~-------h~Dnv~~~l~G---G~~~~~ 148 (302)
T TIGR00191 79 PPVKVTLEKNIPLGRGLGSSAAAIVAALAAANELCGLPLSKERLLDYASELEG-------HPDNVAPALLG---GFQLAF 148 (302)
T ss_pred CCEEEEEEcCCCCcCCCChHHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhcC-------CcccHHHHhcc---CEEEEE
Confidence 69999999999999999999999999999999999999999999999999994 14664 35565 344444
Q ss_pred eCCCeeEEeecC--CCceEEEEecCcc
Q 020779 92 FNPIRTTDVQLP--AGGTFVVAHSLAE 116 (321)
Q Consensus 92 ~~~~~~~~i~~p--~~~~~vv~~S~v~ 116 (321)
....+...+++| +++.+++++++.+
T Consensus 149 ~~~~~~~~~~~~~~~~~~~vl~~p~~~ 175 (302)
T TIGR00191 149 VEDDKLEVLKIPIFSKLDWVLAIPNIE 175 (302)
T ss_pred EcCCceEEEEeCCCCCEEEEEEECCCc
Confidence 444345555554 6899999999873
No 29
>PRK14611 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.13 E-value=3.8e-10 Score=106.32 Aligned_cols=92 Identities=11% Similarity=0.048 Sum_probs=74.3
Q ss_pred ccEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhCCCCCcccceeeeeccCCceEEeee
Q 020779 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 92 (321)
Q Consensus 13 ~G~~i~I~s~IP~gsGLsSSAAl~VA~~~Al~~l~g~~ls~~ela~la~~aE~~~G~~~G~mDq~a~~~g~~g~~l~id~ 92 (321)
.|+++.|.++||+++|||||||..+|++.|+++++|.+++++++.++|...| .|...+++| +..+.+.
T Consensus 79 ~~~~i~i~k~IP~~~GLGSSsA~aaA~l~al~~~~~~~l~~~~l~~la~~i~---------~D~~~~~~G---g~~~~~~ 146 (275)
T PRK14611 79 INYSIFIEKNIPVGAGLGGGSSNAAVVLKYLNELLGNPLSEEELFELASSIS---------ADAPFFLKG---GFALGRG 146 (275)
T ss_pred CCeEEEEEeCCCCcCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhC---------CCCCeeecC---CeEEEec
Confidence 5899999999999999999999999999999999999999999999999876 264445554 4455554
Q ss_pred CCCeeEEeecCCCceEEEEecCcc
Q 020779 93 NPIRTTDVQLPAGGTFVVAHSLAE 116 (321)
Q Consensus 93 ~~~~~~~i~~p~~~~~vv~~S~v~ 116 (321)
......+++.+.+..+++++++++
T Consensus 147 ~g~~~~~~~~~~~~~~vv~~p~~~ 170 (275)
T PRK14611 147 IGDKLEFLEKPISREITLVYPNIK 170 (275)
T ss_pred cCceeEECCcCCCcEEEEEeCCCC
Confidence 434455665555667999999983
No 30
>TIGR01219 Pmev_kin_ERG8 phosphomevalonate kinase, ERG8-type, eukaryotic branch. This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found - the animal type and this ERG8 type. This model represents plant and fungal forms of the ERG8 type of phosphomevalonate kinase.
Probab=99.11 E-value=7.2e-10 Score=111.07 Aligned_cols=104 Identities=21% Similarity=0.174 Sum_probs=86.5
Q ss_pred CccEEEEEEeCC-------------------C--------CCCCCChHHHHHHHHHHHHHHHhCCCC-------------
Q 020779 12 FQLFNHINSLFF-------------------N--------LGSGLSSSTAFVCSSTVALMAAFGVEV------------- 51 (321)
Q Consensus 12 ~~G~~i~I~s~I-------------------P--------~gsGLsSSAAl~VA~~~Al~~l~g~~l------------- 51 (321)
++++++.|.|+. + .+.|||||||++||++.||..+++..+
T Consensus 111 l~~~~itI~sd~d~ySq~~~~~~~~~~~~f~~~~~~~~e~~K~GLGSSAAvtVa~v~ALl~~~~~~~~~~~~~~~~~~~~ 190 (454)
T TIGR01219 111 LQGLDITILGDNAYYSQPESLGTLAPFASITFNAAEKPEVAKTGLGSSAAMTTALVAALLHYLGVVDLSDPDKEGKFGCS 190 (454)
T ss_pred cCceEEEEEecCCcccccchhcccccccccccccccCCCccccCccHHHHHHHHHHHHHHHHhCCccccccccccccccc
Confidence 678999998877 2 278999999999999999999999877
Q ss_pred CHHHHHHHHHHHHH-hhCC-CCCcccceeeeeccCCceEEeeeCCC----------------------------eeEEee
Q 020779 52 PKKEIAQLTCECEQ-FIGT-QSGGMDQAISIMAKSGFAELIDFNPI----------------------------RTTDVQ 101 (321)
Q Consensus 52 s~~ela~la~~aE~-~~G~-~~G~mDq~a~~~g~~g~~l~id~~~~----------------------------~~~~i~ 101 (321)
+++.+.++|+.+|. .+|+ .+| .|.++++|| +.++..|.+. ++++++
T Consensus 191 ~~~~i~kLA~~ah~~~qGk~GSG-~DvAaavyG---gi~Y~rfd~~~l~~~~~~~~~~~~~~~L~~~v~~~W~~~i~~l~ 266 (454)
T TIGR01219 191 DLDVIHNLAQTAHCLAQGKVGSG-FDVSAAVYG---SQRYRRFSPELISFLQVAITGLPLNEVLGTIVKGKWDNKRTEFS 266 (454)
T ss_pred CHHHHHHHHHHHHHhhcCCCCCc-hhhhhhhcC---ceEEEecChhhhhhhhccccccchhhhHHHHhccCCCCceeecc
Confidence 78999999999998 8896 466 799999997 3566666442 445677
Q ss_pred cCCCceEEEEecCccchh
Q 020779 102 LPAGGTFVVAHSLAESLK 119 (321)
Q Consensus 102 ~p~~~~~vv~~S~v~~~k 119 (321)
+|+++++++.+|+.+++.
T Consensus 267 lP~~l~Llvgdtg~~ssT 284 (454)
T TIGR01219 267 LPPLMNLFMGDPGGGSST 284 (454)
T ss_pred CCCCCEEEEEcCCCCcCc
Confidence 788999999999997553
No 31
>COG0083 ThrB Homoserine kinase [Amino acid transport and metabolism]
Probab=99.06 E-value=1.9e-09 Score=102.40 Aligned_cols=93 Identities=26% Similarity=0.267 Sum_probs=78.6
Q ss_pred cEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhCCCCCccccee-eeeccCCceEEeee
Q 020779 14 LFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAI-SIMAKSGFAELIDF 92 (321)
Q Consensus 14 G~~i~I~s~IP~gsGLsSSAAl~VA~~~Al~~l~g~~ls~~ela~la~~aE~~~G~~~G~mDq~a-~~~g~~g~~l~id~ 92 (321)
++.+.+.++||.|+|||||||..||.+.|++++++.+++++++.+++-..|. --|+.+ +++| | +.+...
T Consensus 77 ~~~i~i~k~IP~~rGLGSSaAsiVAal~aan~l~~~~L~~~~ll~~a~~~Eg-------HpDNVapa~lG--G-~~l~~~ 146 (299)
T COG0083 77 GVKIRIEKGIPLGRGLGSSAASIVAALAAANELAGLPLSKEELLQLALEIEG-------HPDNVAPAVLG--G-LVLVEE 146 (299)
T ss_pred cEEEEEEcCCCCCCCCcHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhcC-------CCchHHHHhhC--C-EEEEee
Confidence 3999999999999999999999999999999999999999999999999994 248864 7887 3 333333
Q ss_pred -CCCeeEEeecCCCceEEEEecCcc
Q 020779 93 -NPIRTTDVQLPAGGTFVVAHSLAE 116 (321)
Q Consensus 93 -~~~~~~~i~~p~~~~~vv~~S~v~ 116 (321)
.+..+.++++|.++.++++-++++
T Consensus 147 ~~~~~~~~v~~~~~~~~v~~iP~~e 171 (299)
T COG0083 147 ESGIISVKVPFPSDLKLVVVIPNFE 171 (299)
T ss_pred cCCceEEEccCCcceEEEEEeCCcc
Confidence 456777888888999999998874
No 32
>TIGR00154 ispE 4-diphosphocytidyl-2C-methyl-D-erythritol kinase. Members of this family of GHMP kinases were previously designated as conserved hypothetical protein YchB or as isopentenyl monophosphate kinase. It is now known, in tomato and E. coli, to encode 4-diphosphocytidyl-2C-methyl-D-erythritol kinase, an enzyme of the deoxyxylulose phosphate pathway of terpenoid biosynthesis.
Probab=99.01 E-value=2.8e-09 Score=101.46 Aligned_cols=92 Identities=16% Similarity=0.107 Sum_probs=74.5
Q ss_pred CccEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhCCCCCcccceeeeeccCCceEEee
Q 020779 12 FQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELID 91 (321)
Q Consensus 12 ~~G~~i~I~s~IP~gsGLsSSAAl~VA~~~Al~~l~g~~ls~~ela~la~~aE~~~G~~~G~mDq~a~~~g~~g~~l~id 91 (321)
.+|+++.|.++||.|+|||||||.++|++.+++++++.++++++++++|.+.| .|-..+++| +..+..
T Consensus 84 ~~~~~i~i~~~iP~~aGLGsssa~aaa~l~al~~~~~~~l~~~~l~~la~~lg---------~Dv~~~~~g---g~~~~~ 151 (293)
T TIGR00154 84 LDGANIEIDKNIPMGAGLGGGSSDAATVLVGLNQLWQLGLSLEELAELGLTLG---------ADVPFFVSG---HAAFAT 151 (293)
T ss_pred CCCeEEEEeccCCCCCCcchhHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhC---------CCcceEEEC---CeEEEE
Confidence 35999999999999999999999999999999999999999999999998774 376677775 333433
Q ss_pred eCCCeeEEeecCCCceEEEEecCc
Q 020779 92 FNPIRTTDVQLPAGGTFVVAHSLA 115 (321)
Q Consensus 92 ~~~~~~~~i~~p~~~~~vv~~S~v 115 (321)
......++++.++++.++++++++
T Consensus 152 g~ge~~~~l~~~~~~~~vl~~p~~ 175 (293)
T TIGR00154 152 GVGEIITPFEDPPEKWVVIAKPHV 175 (293)
T ss_pred ecCcEEEECCCCCCcEEEEEcCCC
Confidence 333335556555678899999987
No 33
>PRK14608 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.00 E-value=2.4e-09 Score=101.78 Aligned_cols=91 Identities=10% Similarity=0.016 Sum_probs=73.5
Q ss_pred ccEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhCCCCCcccceeeeeccCCceEEeee
Q 020779 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 92 (321)
Q Consensus 13 ~G~~i~I~s~IP~gsGLsSSAAl~VA~~~Al~~l~g~~ls~~ela~la~~aE~~~G~~~G~mDq~a~~~g~~g~~l~id~ 92 (321)
+|+++.|.++||+|+|||||||..+|++.++++++|.++++++++++|...| .|-..+++| +..+...
T Consensus 89 ~~~~i~i~k~IP~~~GLGsssa~aaa~l~~l~~l~~~~ls~~el~~la~~ig---------~dv~~~l~g---g~~~~~g 156 (290)
T PRK14608 89 PPGAFHLEKNLPVAAGIGGGSADAAAALRLLARLWGLALDDERLAALALSLG---------ADVPVCLDS---RPLIMRG 156 (290)
T ss_pred CceEEEEEeCCcCcCCchHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhC---------CCcchhhcC---CeEEEEe
Confidence 6899999999999999999999999999999999999999999999998874 366666665 3333333
Q ss_pred CCCeeEEeecCCCceEEEEecCc
Q 020779 93 NPIRTTDVQLPAGGTFVVAHSLA 115 (321)
Q Consensus 93 ~~~~~~~i~~p~~~~~vv~~S~v 115 (321)
...+.++++.++++.+++++++.
T Consensus 157 ~g~~~~~l~~~~~~~~vv~~p~~ 179 (290)
T PRK14608 157 IGEELTPLPGLPSLPAVLVNPGV 179 (290)
T ss_pred cCCEeEECCCCCCcEEEEECCCC
Confidence 33345566544578899999988
No 34
>PRK14614 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=98.95 E-value=5.5e-09 Score=98.74 Aligned_cols=91 Identities=10% Similarity=0.045 Sum_probs=73.4
Q ss_pred ccEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhCCCCCcccceeeeeccCCceEEeee
Q 020779 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 92 (321)
Q Consensus 13 ~G~~i~I~s~IP~gsGLsSSAAl~VA~~~Al~~l~g~~ls~~ela~la~~aE~~~G~~~G~mDq~a~~~g~~g~~l~id~ 92 (321)
+|+++.|.++||+++|||||||..+|++.+++++++.+++++++.++|...| .|-..+++| | ..+...
T Consensus 84 ~~~~i~i~~~IP~~~GLGsssa~~~a~~~al~~~~~~~l~~~~l~~~a~~~G---------~Dv~~~l~g--g-~~~~~g 151 (280)
T PRK14614 84 VGIDISITKNIPVAAGLGGGSSDAATVLMGVNELLGLGLSDERLMEIGVKLG---------ADVPFFIFK--K-TALAEG 151 (280)
T ss_pred CceEEEEEecCCCcCccHHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhC---------CCcceeeeC--C-cEEEEE
Confidence 5899999999999999999999999999999999999999999999987553 377666665 2 333333
Q ss_pred CCCeeEEeecCCCceEEEEecCc
Q 020779 93 NPIRTTDVQLPAGGTFVVAHSLA 115 (321)
Q Consensus 93 ~~~~~~~i~~p~~~~~vv~~S~v 115 (321)
+....++++.+++..++++++++
T Consensus 152 ~ge~~~~l~~~~~~~ivl~~p~~ 174 (280)
T PRK14614 152 IGDKLTAVEGVPPLWVVLVNPGL 174 (280)
T ss_pred cCceeEECCCCCCcEEEEECCCC
Confidence 33445666655678899999988
No 35
>TIGR01240 mevDPdecarb diphosphomevalonate decarboxylase. Alternate names: mevalonate diphosphate decarboxylase; pyrophosphomevalonate decarboxylase
Probab=98.93 E-value=4.2e-08 Score=94.02 Aligned_cols=52 Identities=13% Similarity=0.213 Sum_probs=50.1
Q ss_pred ccEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q 020779 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECE 64 (321)
Q Consensus 13 ~G~~i~I~s~IP~gsGLsSSAAl~VA~~~Al~~l~g~~ls~~ela~la~~aE 64 (321)
.++++.+.++||.++|||||||..+|++.|+++++|.++++.++++++.+.|
T Consensus 84 ~~v~I~~~n~iP~~aGLgSSAA~~aA~~~Al~~l~~l~l~~~eL~~lA~~gs 135 (305)
T TIGR01240 84 EKLHIVSQNNFPTAAGLASSASGLAALVSACAKLYQLPLDTSELSRIARKGS 135 (305)
T ss_pred CceEEEEecCCCCCCccchHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhc
Confidence 4799999999999999999999999999999999999999999999999887
No 36
>PRK00343 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=98.90 E-value=1e-08 Score=96.54 Aligned_cols=90 Identities=19% Similarity=0.191 Sum_probs=69.0
Q ss_pred ccEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhCCCCCcccceeeeeccCCceEEeee
Q 020779 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 92 (321)
Q Consensus 13 ~G~~i~I~s~IP~gsGLsSSAAl~VA~~~Al~~l~g~~ls~~ela~la~~aE~~~G~~~G~mDq~a~~~g~~g~~l~id~ 92 (321)
+|+++.|.++||+|+|||||||..+|++.+++++++.++++++++++|.+.| .|-..+ ++ |...+...
T Consensus 86 ~~~~i~i~k~IP~gaGLGssSs~aaa~l~al~~l~~~~ls~~el~~la~~ig---------aDvp~~-l~--g~~~~~~g 153 (271)
T PRK00343 86 LGADISLDKRLPMGGGLGGGSSDAATTLVALNRLWQLGLSRDELAELGLKLG---------ADVPVF-VR--GHAAFAEG 153 (271)
T ss_pred CCeEEEEEcCCCCcCCCCcchHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhC---------CCceEE-ec--CCcEEEEe
Confidence 5999999999999999999999999999999999999999999999998765 353233 32 22333333
Q ss_pred CCCeeEEeecCCCceEEEEecCc
Q 020779 93 NPIRTTDVQLPAGGTFVVAHSLA 115 (321)
Q Consensus 93 ~~~~~~~i~~p~~~~~vv~~S~v 115 (321)
.....++++.| ...++++++++
T Consensus 154 ~g~~~~~l~~~-~~~~vl~~p~~ 175 (271)
T PRK00343 154 IGEILTPVDLP-EKWYLVVKPGV 175 (271)
T ss_pred cCCEEEECCCC-CcEEEEEeCCC
Confidence 33345566543 45678999987
No 37
>PRK14609 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=98.90 E-value=1.1e-08 Score=96.42 Aligned_cols=91 Identities=12% Similarity=0.035 Sum_probs=72.4
Q ss_pred ccEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhCCCCCcccceeeeeccCCceEEeee
Q 020779 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 92 (321)
Q Consensus 13 ~G~~i~I~s~IP~gsGLsSSAAl~VA~~~Al~~l~g~~ls~~ela~la~~aE~~~G~~~G~mDq~a~~~g~~g~~l~id~ 92 (321)
+|+++.+.++||.|+|||||||..+|++.+++++++.++++++++++|...+ .|...++.| +..+..-
T Consensus 81 ~~~~i~i~k~IP~~aGLGssss~aaa~l~al~~~~~~~l~~~~l~~la~~iG---------aDvpffl~g---~~a~~~G 148 (269)
T PRK14609 81 PPVHIHLYKHIPIGAGLGGGSSDAAFMLKLLNDKFNLGLSDEELEAYAATLG---------ADCAFFIRN---KPVYATG 148 (269)
T ss_pred CCeEEEEecCCCCCCcccHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhC---------CCceEEccC---CCEEEEE
Confidence 5899999999999999999999999999999999999999999999998763 476555543 3333333
Q ss_pred CCCeeEEeecC-CCceEEEEecCc
Q 020779 93 NPIRTTDVQLP-AGGTFVVAHSLA 115 (321)
Q Consensus 93 ~~~~~~~i~~p-~~~~~vv~~S~v 115 (321)
+....++++.+ +++.++++++++
T Consensus 149 ~Ge~l~~l~~~~~~~~~vlv~P~~ 172 (269)
T PRK14609 149 IGDIFSPIDLSLSGYYIALVKPDI 172 (269)
T ss_pred eCCeeEECCCCCCCCEEEEECCCC
Confidence 33445666543 577899999988
No 38
>PRK14616 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=98.90 E-value=1.2e-08 Score=96.64 Aligned_cols=93 Identities=12% Similarity=0.039 Sum_probs=68.4
Q ss_pred CccEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhCCCCCcccceeeeeccCCceEEee
Q 020779 12 FQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELID 91 (321)
Q Consensus 12 ~~G~~i~I~s~IP~gsGLsSSAAl~VA~~~Al~~l~g~~ls~~ela~la~~aE~~~G~~~G~mDq~a~~~g~~g~~l~id 91 (321)
.+|+++.|.++||+++|||||||..+|++.++++++|.++++++++++|.+.|- |--+.+.+ |++.+.-
T Consensus 81 ~~~~~I~i~k~IP~~~GLGssSA~aaA~l~al~~l~g~~ls~~el~~~a~~ig~---------Dvp~~l~~--gg~~~~~ 149 (287)
T PRK14616 81 SKGVSITLDKRVPFGAGLGGGSSDAATVLRVLNELWEINAPSADLHRLAVKLGA---------DVPYFLEM--KGLAYAT 149 (287)
T ss_pred CCCeEEEEEeCCCCcCCchHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCC---------CcceEecc--CCcEEEE
Confidence 368999999999999999999999999999999999999999999999999862 41111111 1222221
Q ss_pred eCCCeeEEeecCCCceEEEEecCc
Q 020779 92 FNPIRTTDVQLPAGGTFVVAHSLA 115 (321)
Q Consensus 92 ~~~~~~~~i~~p~~~~~vv~~S~v 115 (321)
......++++.+..+.++++++++
T Consensus 150 g~g~~~~~~~~~~~~~~vvv~P~~ 173 (287)
T PRK14616 150 GIGDELEDLQLTLPFHIVTVFPEE 173 (287)
T ss_pred EcCceeEECCcCCCcEEEEECCCC
Confidence 112234445444457899999987
No 39
>TIGR00144 beta_RFAP_syn beta-RFAP synthase. This protein family contains several archaeal examples of beta-ribofuranosylaminobenzene 5-prime-phosphate synthase (beta-RFAP synthase), an enzyme involved in methanopterin biosynthesis. In some species, two members of this family are found. It is unclear whether both act as beta-RFAP synthase. This family is related to the GHMP kinases (Galactokinase, Homoserine kinase, Mevalonate kinase, Phosphomevalonate kinase). Members are found so far only in the Archaea and in Methylobacterium extorquens.
Probab=98.86 E-value=2.2e-08 Score=96.65 Aligned_cols=92 Identities=18% Similarity=0.155 Sum_probs=73.2
Q ss_pred ccEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhCCCCCcccceeeeeccCCceEEeee
Q 020779 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 92 (321)
Q Consensus 13 ~G~~i~I~s~IP~gsGLsSSAAl~VA~~~Al~~l~g~~ls~~ela~la~~aE~~~G~~~G~mDq~a~~~g~~g~~l~id~ 92 (321)
+|+++.|.++||+++|||||||..+|.+.|++.++|.+++++++++++.+.| .+| .|-+++.+| ++++ +.
T Consensus 81 ~~~~i~i~~~IP~~~GLGSsaa~avA~~~a~~~l~~~~ls~~el~~~a~~ge-----~s~-~~va~~~~G---G~vv-~~ 150 (324)
T TIGR00144 81 EGFHFTVRSMFPAHSGLGSGTQLSLAVGRLVSEYYGMKFTAREIAHIVGRGG-----TSG-IGVASFEDG---GFIV-DG 150 (324)
T ss_pred CCEEEEEeecCCCccCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhCCC-----CCc-cceeeeeeC---CEEE-EC
Confidence 5899999999999999999999999999999999999999999999987654 344 355667775 3333 31
Q ss_pred ----C---------------CCeeEEeecCCCceEEEEecCc
Q 020779 93 ----N---------------PIRTTDVQLPAGGTFVVAHSLA 115 (321)
Q Consensus 93 ----~---------------~~~~~~i~~p~~~~~vv~~S~v 115 (321)
. +..+.++++| ++.++++.+..
T Consensus 151 G~~~~~~~~~~~~~~~~~~~~~~~~r~~~p-~~~~vlviP~~ 191 (324)
T TIGR00144 151 GHSSKEKSDFLPSSASSAKPAPVIARYDFP-DWNIILAIPEI 191 (324)
T ss_pred CcccccccccCcccccCCCCCCeEEecCCC-CcEEEEEecCC
Confidence 1 1225666777 99999999876
No 40
>PTZ00299 homoserine kinase; Provisional
Probab=98.83 E-value=2.1e-08 Score=97.33 Aligned_cols=93 Identities=24% Similarity=0.205 Sum_probs=73.0
Q ss_pred ccEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHHHHhhCCCCCccccee-eeeccCCceE
Q 020779 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVP---KKEIAQLTCECEQFIGTQSGGMDQAI-SIMAKSGFAE 88 (321)
Q Consensus 13 ~G~~i~I~s~IP~gsGLsSSAAl~VA~~~Al~~l~g~~ls---~~ela~la~~aE~~~G~~~G~mDq~a-~~~g~~g~~l 88 (321)
+|+++.|.++||+++|||||||..+|.+.++++++|.+++ ++++.++|.+.| |--|+.+ +++| +..
T Consensus 81 ~g~~i~i~k~IP~~~GLGSSsA~avA~l~a~n~l~g~~l~~~~~~el~~~A~~~E-------GHpDNVapal~G---G~~ 150 (336)
T PTZ00299 81 PPLKFIMHSNIPYGCGCGSSSAAAVAGFVAGMKLCGLTMETENEEALLQAIAKFE-------GHPDNAAPAIYG---GIQ 150 (336)
T ss_pred CceEEEEecCCCccCCccHHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHhhc-------CCcccHHHHHhC---CEE
Confidence 5899999999999999999999999999999999999995 899999998888 2358654 5665 333
Q ss_pred Eeee-CCCe--eEEeecCCCceEEEEecCc
Q 020779 89 LIDF-NPIR--TTDVQLPAGGTFVVAHSLA 115 (321)
Q Consensus 89 ~id~-~~~~--~~~i~~p~~~~~vv~~S~v 115 (321)
+... .+.+ +..++.|+++.++++.++.
T Consensus 151 ~~~~~~~ge~~~~~i~~~~~~~~vv~iP~~ 180 (336)
T PTZ00299 151 LVYKKDNGRFLTYRVPTPPNLSVVLFVPHN 180 (336)
T ss_pred EEEecCCCceEEEecCCCCCeEEEEEECCC
Confidence 3332 2233 4466666789999888875
No 41
>COG1685 Archaeal shikimate kinase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=98.75 E-value=6.7e-08 Score=89.85 Aligned_cols=99 Identities=25% Similarity=0.253 Sum_probs=81.5
Q ss_pred ccEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhCCC-CCccccee-eeeccCCceEEe
Q 020779 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQ-SGGMDQAI-SIMAKSGFAELI 90 (321)
Q Consensus 13 ~G~~i~I~s~IP~gsGLsSSAAl~VA~~~Al~~l~g~~ls~~ela~la~~aE~~~G~~-~G~mDq~a-~~~g~~g~~l~i 90 (321)
.|+++.|+|+||.|+||.||+|+..|++.|+..+.|.++++.+++.++.++-.-.|.. +|-.|..+ +.+ |+..+.
T Consensus 69 ~~~~v~v~SeiP~~~GLkSSSA~~nAlv~A~~~~~g~~~~~~~i~~l~a~~S~~aGvSvTGA~DDa~AS~~---GG~~iT 145 (278)
T COG1685 69 LGVEVEVESEIPVGSGLKSSSAASNALVKAVLKALGEEIDDFEILRLGARASKEAGVSVTGAFDDACASYL---GGIVIT 145 (278)
T ss_pred cceEEEEecCCCcccCcchhHHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHhcCceEeccchHHHHHHh---CCeEEe
Confidence 3899999999999999999999999999999999999999999999998888777764 67788765 566 578888
Q ss_pred eeCCCeeEEe-ecCCCceEEEEecCc
Q 020779 91 DFNPIRTTDV-QLPAGGTFVVAHSLA 115 (321)
Q Consensus 91 d~~~~~~~~i-~~p~~~~~vv~~S~v 115 (321)
|.+.+++-.. +.| +...+|.-++.
T Consensus 146 DN~~m~Ilrr~~~~-~~~vlI~~p~~ 170 (278)
T COG1685 146 DNRKMRILRRLDLP-ELTVLILAPGE 170 (278)
T ss_pred cchhheehhccccC-CceEEEEecCC
Confidence 9887766544 444 55666666665
No 42
>PRK14615 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=98.73 E-value=7.7e-08 Score=91.74 Aligned_cols=91 Identities=15% Similarity=0.018 Sum_probs=67.9
Q ss_pred ccEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhCCCCCcccceeeeeccCCceEEeee
Q 020779 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 92 (321)
Q Consensus 13 ~G~~i~I~s~IP~gsGLsSSAAl~VA~~~Al~~l~g~~ls~~ela~la~~aE~~~G~~~G~mDq~a~~~g~~g~~l~id~ 92 (321)
+|+++.|.++||+++|||||||..+|++.+++++++.+++.+++++++...|- .+|.-+....+ +.++.|
T Consensus 87 ~~~~i~i~k~IP~~~GLGsgsa~aaa~l~al~~l~~~~l~~~~l~~~a~~~ga--DvPffl~gg~a-~~~G~G------- 156 (296)
T PRK14615 87 PPLEVHLRKGIPHGAGLGGGSADAAALLRHLNSIAPHPLSPEALAKLAAGVGA--DVPFFLHNVPC-RATGIG------- 156 (296)
T ss_pred CCeEEEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCC--CCeeeccCCCE-EEEeeE-------
Confidence 68999999999999999999999999999999999999999999999988774 22221111111 222111
Q ss_pred CCCeeEEeec-CCCceEEEEecCc
Q 020779 93 NPIRTTDVQL-PAGGTFVVAHSLA 115 (321)
Q Consensus 93 ~~~~~~~i~~-p~~~~~vv~~S~v 115 (321)
...+++++ ++++.++++++++
T Consensus 157 --e~~~~l~~~~~~~~~vl~~P~~ 178 (296)
T PRK14615 157 --EILTPVALGLSGWTLVLVCPEV 178 (296)
T ss_pred --eEEEECCCCCCCcEEEEECCCC
Confidence 23455554 3467899999988
No 43
>PRK14612 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=98.62 E-value=2.2e-07 Score=87.56 Aligned_cols=88 Identities=16% Similarity=0.085 Sum_probs=64.1
Q ss_pred ccEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhCCCCCcccceeeeeccCCceEEeee
Q 020779 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 92 (321)
Q Consensus 13 ~G~~i~I~s~IP~gsGLsSSAAl~VA~~~Al~~l~g~~ls~~ela~la~~aE~~~G~~~G~mDq~a~~~g~~g~~l~id~ 92 (321)
+|+++.|.++||+|+|||||||..+|++.+++++++.+++..+++ ...| .|-..+++| +..+.-.
T Consensus 82 ~~~~I~i~k~IP~~~GLGssSa~aaa~l~al~~l~~~~l~l~~ia---~~~g---------~dv~~~~~G---G~~~~~g 146 (276)
T PRK14612 82 GGVRITLEKRLPLAAGLGGGSSDAAATLLALAQLYPAPVDLPALA---LTLG---------ADVPFFLLG---GAAEARG 146 (276)
T ss_pred CCeEEEEEecCCCcCCCchHHHHHHHHHHHHHHHhCCChHHHHHH---HHhC---------CCcCeeeeC---CeEEEEe
Confidence 589999999999999999999999999999999999877644444 3332 365555554 3333322
Q ss_pred CCCeeEEeecCCCceEEEEecCcc
Q 020779 93 NPIRTTDVQLPAGGTFVVAHSLAE 116 (321)
Q Consensus 93 ~~~~~~~i~~p~~~~~vv~~S~v~ 116 (321)
+...+.+++.| ++.++|+.++++
T Consensus 147 ~g~~~~~l~~~-~~~~vv~~P~~~ 169 (276)
T PRK14612 147 VGERLTPLELP-PVPLVLVNPGVA 169 (276)
T ss_pred cCccceEcCCC-CcEEEEECCCCC
Confidence 22345556543 788999999883
No 44
>PRK00650 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=98.61 E-value=2.8e-07 Score=87.65 Aligned_cols=91 Identities=12% Similarity=0.084 Sum_probs=67.3
Q ss_pred ccEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhCCCCCcccceeeeeccCCceEEeee
Q 020779 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 92 (321)
Q Consensus 13 ~G~~i~I~s~IP~gsGLsSSAAl~VA~~~Al~~l~g~~ls~~ela~la~~aE~~~G~~~G~mDq~a~~~g~~g~~l~id~ 92 (321)
+|+++.|..+||+|+|||||||-.+|++.+++++++.+++++++.+++.+.|- -+|.=+...++...|.
T Consensus 79 ~~v~I~i~K~IP~gaGLGggSS~aAa~L~~ln~l~~~~ls~~eL~~lA~~lGa--DvPffl~~g~a~~~G~--------- 147 (288)
T PRK00650 79 TPVSWRVVKQIPIGAGLAGGSSNAATALFALNQIFQTGLSDEELRSLAEKIGM--DTPFFFSTGSALGVGR--------- 147 (288)
T ss_pred CCeEEEEeeCCCCcCCcCcchhHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCC--cchhhhcCceEEEEec---------
Confidence 58999999999999999999999999999999999999999999999988883 1111000012222221
Q ss_pred CCCeeEEeecCCCceEEEEecCc
Q 020779 93 NPIRTTDVQLPAGGTFVVAHSLA 115 (321)
Q Consensus 93 ~~~~~~~i~~p~~~~~vv~~S~v 115 (321)
.-.+++++.+++..++++.+++
T Consensus 148 -Ge~l~~~~~~~~~~~vlv~P~~ 169 (288)
T PRK00650 148 -GEKIIALEESVSDRYVLYFSSE 169 (288)
T ss_pred -CCEEEECcCCCCceEEEEeCCC
Confidence 1234555555567788888876
No 45
>PRK04181 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=98.45 E-value=1.7e-06 Score=81.02 Aligned_cols=100 Identities=11% Similarity=0.050 Sum_probs=69.5
Q ss_pred ccEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhCCCCCcccceeeeeccCCceEEeee
Q 020779 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 92 (321)
Q Consensus 13 ~G~~i~I~s~IP~gsGLsSSAAl~VA~~~Al~~l~g~~ls~~ela~la~~aE~~~G~~~G~mDq~a~~~g~~g~~l~id~ 92 (321)
+|+++.|..+||.|+|||||||-.+|+..+++++++.+++++++.++|.+. | .|---+++|. +.-+..-
T Consensus 85 ~gv~I~i~K~IP~gaGLGggSSdAAA~L~aln~l~~~~ls~~eL~~lA~~l--------G-aDvPffl~~~--~~a~~~G 153 (257)
T PRK04181 85 KKKAIEVEKNIPTGAGLGGGSSDAATFLLMLNEILNLKLSLEELAEIGSKV--------G-ADVAFFISGY--KSANVSG 153 (257)
T ss_pred CceEEEEEeCCCCcCcccccHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHh--------C-CCccEEecCC--ceEEEEe
Confidence 589999999999999999999999999999999999999999999888554 2 3443333321 1112222
Q ss_pred CCCeeEEeecCCCceEEEEecCccchhhcccccchH
Q 020779 93 NPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYN 128 (321)
Q Consensus 93 ~~~~~~~i~~p~~~~~vv~~S~v~~~k~~~a~~~Yn 128 (321)
+--..++++.+.. .++++++++ ....+.-|.
T Consensus 154 ~Ge~l~~l~~~~~-~~~lv~P~~----~vsT~~vy~ 184 (257)
T PRK04181 154 IGEIVEEFEEEIL-NLEIFTPNI----FCSTKAVYK 184 (257)
T ss_pred eCCeeEECCCCCC-eEEEECCCC----CcCHHHHHH
Confidence 2234555543222 388888877 333445563
No 46
>PRK14613 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=98.32 E-value=3e-06 Score=80.94 Aligned_cols=88 Identities=10% Similarity=0.002 Sum_probs=62.1
Q ss_pred ccEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCH-HHHHHHHHHHHHhhCCCCCcccceeeeeccCCceEEee
Q 020779 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPK-KEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELID 91 (321)
Q Consensus 13 ~G~~i~I~s~IP~gsGLsSSAAl~VA~~~Al~~l~g~~ls~-~ela~la~~aE~~~G~~~G~mDq~a~~~g~~g~~l~id 91 (321)
+|+++.|.++||+++|||||||-.++++.+++..++ ++. +++.++|.+.| .| ..++++ |...+..
T Consensus 92 ~~v~I~i~K~IP~~aGLGggSs~Aaa~l~~l~~~~~--l~~~e~L~~lA~~lG---------aD-vP~~l~--G~~a~~~ 157 (297)
T PRK14613 92 PGVKIHLTKRISPAGGLGGGSTNAASLLNFLFSWRN--FFTSDEMQVFAKEIG---------SD-VPFFLG--EGHAFVT 157 (297)
T ss_pred CCeEEEEEeCCCccCCccccHHHHHHHHHHHHhcCC--CCcHHHHHHHHHHhC---------Cc-cchhhc--CCeEEEe
Confidence 689999999999999999999998888777776554 444 66666887763 37 444444 2345555
Q ss_pred eCCCeeEEeecCCCceEEEEecCc
Q 020779 92 FNPIRTTDVQLPAGGTFVVAHSLA 115 (321)
Q Consensus 92 ~~~~~~~~i~~p~~~~~vv~~S~v 115 (321)
.....++++++|+.+. +++.+++
T Consensus 158 g~Ge~~~~l~~~~~~~-vlv~P~~ 180 (297)
T PRK14613 158 GKGEIMEEIEVHKGQG-ILALTPQ 180 (297)
T ss_pred cCCcEEEEcCCCCCeE-EEEECCC
Confidence 4444566776665554 6777877
No 47
>COG4542 PduX Protein involved in propanediol utilization, and related proteins (includes coumermycin biosynthetic protein), possible kinase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.32 E-value=1.6e-06 Score=80.20 Aligned_cols=99 Identities=23% Similarity=0.241 Sum_probs=74.3
Q ss_pred ccEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhCCCCCcccceeeeeccCCceEEeee
Q 020779 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 92 (321)
Q Consensus 13 ~G~~i~I~s~IP~gsGLsSSAAl~VA~~~Al~~l~g~~ls~~ela~la~~aE~~~G~~~G~mDq~a~~~g~~g~~l~id~ 92 (321)
.|.++.+.|+||.|.||+||.|-.||++.|+...+|..++..+++++|..+| |+ |- .+| +++.++|.
T Consensus 82 ~~i~l~lqSsIPvgKG~ASSTADl~At~~A~A~~l~~~l~es~iakLcv~iE-----Pt---Ds--iiF---~~~tlFd~ 148 (293)
T COG4542 82 TGIDLLLQSSIPVGKGMASSTADLVATARATARFLGRELRESEIAKLCVSIE-----PT---DS--IIF---DKATLFDQ 148 (293)
T ss_pred CCeeEEEeccccccccccccHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhcC-----Cc---cc--eec---ccceeehh
Confidence 6899999999999999999999999999999999999999999999999999 22 21 122 33556666
Q ss_pred CCCeeEE-eecCCCceEEEEecCccchhhcccccchHH
Q 020779 93 NPIRTTD-VQLPAGGTFVVAHSLAESLKAITAASNYNN 129 (321)
Q Consensus 93 ~~~~~~~-i~~p~~~~~vv~~S~v~~~k~~~a~~~Yn~ 129 (321)
+...+.. ..-++.+.+++.+.+. ..-...||.
T Consensus 149 r~g~~~~~~g~~PpL~ilv~e~~~-----~v~T~~y~q 181 (293)
T COG4542 149 REGRVIEFLGEMPPLHILVFEGKG-----TVETVDYNQ 181 (293)
T ss_pred ccchHHHhcCCCCceEEEEEcCCC-----ceeeeeccC
Confidence 6544322 1122467888888765 233456774
No 48
>PRK14610 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=98.31 E-value=6e-06 Score=78.30 Aligned_cols=98 Identities=10% Similarity=0.021 Sum_probs=71.4
Q ss_pred ccEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhCCCCCcccceeeeeccCCceEEeee
Q 020779 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 92 (321)
Q Consensus 13 ~G~~i~I~s~IP~gsGLsSSAAl~VA~~~Al~~l~g~~ls~~ela~la~~aE~~~G~~~G~mDq~a~~~g~~g~~l~id~ 92 (321)
+|+++.|..+||+++|||||||-.+|+..+++++++ ++.+++.+++.+. | .|--.+++| +.+ +..-
T Consensus 83 ~g~~i~i~K~IP~~aGLGggSs~aaa~L~~ln~l~~--ls~~~l~~ia~~l--------G-aDvPffl~g--~~a-~~~G 148 (283)
T PRK14610 83 TNVYVKVIKNIPVSAGLAGGSADAAAVIRLLGKLWG--IDEQILNELALSV--------G-SDVPACLDS--KTL-FVRG 148 (283)
T ss_pred CCeEEEEEcCCCCCCcCCccHHHHHHHHHHHHHHhC--CCHHHHHHHHHHh--------C-CCCcEEEEC--CeE-EEEe
Confidence 599999999999999999999999999999999996 7999999888763 3 677767765 333 4444
Q ss_pred CCCeeEEeec-CCCceEEEEec-CccchhhcccccchH
Q 020779 93 NPIRTTDVQL-PAGGTFVVAHS-LAESLKAITAASNYN 128 (321)
Q Consensus 93 ~~~~~~~i~~-p~~~~~vv~~S-~v~~~k~~~a~~~Yn 128 (321)
.--..++++. +....++++.+ ++ +...+.-|.
T Consensus 149 ~Ge~l~~l~~~~~~~~~vl~~p~~~----~~sT~~vy~ 182 (283)
T PRK14610 149 IGEDILLLPDLSLPTYVVLVAPKGK----FLSTRKVFN 182 (283)
T ss_pred cccEEEECcccCCCCeEEEEECCCC----ccChHHHHH
Confidence 4445666643 22334777766 55 333445563
No 49
>PLN02407 diphosphomevalonate decarboxylase
Probab=98.27 E-value=1.9e-05 Score=76.64 Aligned_cols=48 Identities=21% Similarity=0.194 Sum_probs=44.1
Q ss_pred EEEEEEe--CCCCCCCCChHHHHHHHHHHHHHHHhCCCCC-HHHHHHHHHH
Q 020779 15 FNHINSL--FFNLGSGLSSSTAFVCSSTVALMAAFGVEVP-KKEIAQLTCE 62 (321)
Q Consensus 15 ~~i~I~s--~IP~gsGLsSSAAl~VA~~~Al~~l~g~~ls-~~ela~la~~ 62 (321)
+++.|.| ++|.++||+||||..+|++.|+..+++++++ +.++..+|..
T Consensus 104 ~~~~I~S~N~~PtaaGLaSSAs~~aAl~~al~~~~~~~~~~~~~ls~lAr~ 154 (343)
T PLN02407 104 LHVHIASYNNFPTAAGLASSAAGFACLVFALAKLMNVKEDFPGELSAIARQ 154 (343)
T ss_pred ccEEEEeccCCccccchHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHhc
Confidence 3677887 9999999999999999999999999999999 9999888873
No 50
>COG1829 Predicted archaeal kinase (sugar kinase superfamily) [General function prediction only]
Probab=98.17 E-value=5.3e-05 Score=70.99 Aligned_cols=101 Identities=20% Similarity=0.168 Sum_probs=78.8
Q ss_pred ccEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhCCCCCcccceeeeeccCCceEEeee
Q 020779 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 92 (321)
Q Consensus 13 ~G~~i~I~s~IP~gsGLsSSAAl~VA~~~Al~~l~g~~ls~~ela~la~~aE~~~G~~~G~mDq~a~~~g~~g~~l~id~ 92 (321)
.|+.+.+.+++|+|+|+|-|+|...+.++|++..++.+ .++.+++|+.+|--.|+ |+=|-.+.++| | +.+..
T Consensus 73 ~~~~v~~~~~~P~G~G~G~Sga~AL~~Ala~a~~~~~~--~~~a~~~AH~aEV~~gt--GLGDVvAq~~G--G--lViR~ 144 (283)
T COG1829 73 DGVGVRIESPVPLGCGYGVSGAGALGTALALAEELGLG--EESAARIAHVAEVENGT--GLGDVVAQYTG--G--LVIRV 144 (283)
T ss_pred cCcceEEEecCCCCcccchhHHHHHHHHHHHHhhcCCC--HHHHHHHHHHHHHHcCC--CchHHHHHhcC--c--EEEEe
Confidence 35789999999999999999999999999999999876 78899999999975554 55688888886 3 55555
Q ss_pred CC-----CeeEEeecCCCceEEEEecCccchhhcc
Q 020779 93 NP-----IRTTDVQLPAGGTFVVAHSLAESLKAIT 122 (321)
Q Consensus 93 ~~-----~~~~~i~~p~~~~~vv~~S~v~~~k~~~ 122 (321)
++ ..+..+|.|+ +.++...-+.-+.|+..
T Consensus 145 ~pG~Pg~~~vd~Ip~~~-~~V~~~~~g~l~T~~vi 178 (283)
T COG1829 145 KPGGPGEGEVDRIPVPG-LRVITISLGELSTKSVI 178 (283)
T ss_pred cCCCCCeEEEEEeecCC-ceEEEEEcccccHHHhh
Confidence 54 3677888876 77777776654334444
No 51
>PRK05905 hypothetical protein; Provisional
Probab=98.01 E-value=4.3e-05 Score=71.69 Aligned_cols=99 Identities=13% Similarity=0.081 Sum_probs=68.8
Q ss_pred ccEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhCCCCCcccceeeeeccCCceEEeee
Q 020779 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 92 (321)
Q Consensus 13 ~G~~i~I~s~IP~gsGLsSSAAl~VA~~~Al~~l~g~~ls~~ela~la~~aE~~~G~~~G~mDq~a~~~g~~g~~l~id~ 92 (321)
+|+++.+..+||.|+||||+||=.+|+..+++++++ ++.+++.+++.+. | .|---++.|. +.-+..-
T Consensus 85 ~~~~i~l~K~IP~~aGLGggSSDAAa~L~~Ln~l~~--ls~~~L~~ia~~l--------G-ADVPFfl~g~--~~a~~~G 151 (258)
T PRK05905 85 NHFKIKIKKRIPIGSGLGSGSSNAAVLMKWILEFEG--INEINYKDVVNKL--------G-SDIPFFLSGY--KTAYISD 151 (258)
T ss_pred CCeEEEEEeCCCCcCCCCCCchHHHHHHHHHHHHhC--CCHHHHHHHHHHh--------C-CCcceEEeCC--ccEEEEe
Confidence 589999999999999999999999999999999998 6888888877554 2 3443334330 1122222
Q ss_pred CCCeeEEeecCCCceEEEEecCccchhhcccccchH
Q 020779 93 NPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYN 128 (321)
Q Consensus 93 ~~~~~~~i~~p~~~~~vv~~S~v~~~k~~~a~~~Yn 128 (321)
.--..++++.|.+..++++++++ +.....-|.
T Consensus 152 ~GE~l~pl~~~~~~~~vlv~P~~----~vST~~vY~ 183 (258)
T PRK05905 152 YGSQVEDLIGQFKLTYKVIFMNV----NVSTKKVFE 183 (258)
T ss_pred eCceeEECCCCCCceEEEECCCC----CCCHHHHHH
Confidence 22345666555455689999887 334445563
No 52
>COG3407 MVD1 Mevalonate pyrophosphate decarboxylase [Lipid metabolism]
Probab=97.79 E-value=0.00051 Score=66.37 Aligned_cols=51 Identities=16% Similarity=0.155 Sum_probs=47.3
Q ss_pred ccEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 020779 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCEC 63 (321)
Q Consensus 13 ~G~~i~I~s~IP~gsGLsSSAAl~VA~~~Al~~l~g~~ls~~ela~la~~a 63 (321)
.++.+...++.|-++||+||||...|+++|++.+++..++..++.++|+.+
T Consensus 89 ~~~~i~s~n~~ptaaGLaSSaag~AAl~~Al~~~~~~~~d~~~lS~~AR~g 139 (329)
T COG3407 89 FKVKIVSYNNFPTAAGLASSAAGAAALAAALNRLYDLDLDDEFLSRIARLG 139 (329)
T ss_pred ceEEEEEecCCCccccccccHHHHHHHHHHHHhhhccCCCHHHHHHHHHHh
Confidence 478888999999999999999999999999999999999999999888755
No 53
>COG1947 IspE 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase [Lipid metabolism]
Probab=97.73 E-value=0.00029 Score=67.05 Aligned_cols=92 Identities=16% Similarity=0.152 Sum_probs=70.5
Q ss_pred CccEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhCCCCCcccceeeeeccCCceEEee
Q 020779 12 FQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELID 91 (321)
Q Consensus 12 ~~G~~i~I~s~IP~gsGLsSSAAl~VA~~~Al~~l~g~~ls~~ela~la~~aE~~~G~~~G~mDq~a~~~g~~g~~l~id 91 (321)
..|++|.|+.+||+|+|||+=||=+.|+..+++++++.+++.+||+.++.+. | .|--.++.| +.-+..
T Consensus 83 ~~~v~I~l~K~IPv~aGLGGGSSdAAa~L~~Ln~lw~~~ls~~eL~~Lg~~L--------G-aDVPffl~g---~tA~a~ 150 (289)
T COG1947 83 AGGVSIHLDKNIPVGAGLGGGSSDAAAVLVALNELWGLGLSLEELAELGLRL--------G-ADVPFFLSG---GTAFAE 150 (289)
T ss_pred CCCeeEEEEecCcccCcCccchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHh--------C-CCcCeeeeC---CceEEE
Confidence 4689999999999999999999999999999999999999999999988654 2 455445553 222333
Q ss_pred eCCCeeEEeecCCCceEEEEecCc
Q 020779 92 FNPIRTTDVQLPAGGTFVVAHSLA 115 (321)
Q Consensus 92 ~~~~~~~~i~~p~~~~~vv~~S~v 115 (321)
-+--..++++=++...++++++++
T Consensus 151 G~GE~l~~~~~~~~~~~vl~~P~v 174 (289)
T COG1947 151 GRGEKLEPLEDPPEKWYVLAKPGV 174 (289)
T ss_pred EccceeeECCCCCCceEEEEeCCC
Confidence 333455666644567788888877
No 54
>KOG2833 consensus Mevalonate pyrophosphate decarboxylase [Lipid transport and metabolism]
Probab=97.42 E-value=0.004 Score=59.69 Aligned_cols=50 Identities=20% Similarity=0.280 Sum_probs=45.4
Q ss_pred cEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 020779 14 LFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCEC 63 (321)
Q Consensus 14 G~~i~I~s~IP~gsGLsSSAAl~VA~~~Al~~l~g~~ls~~ela~la~~a 63 (321)
-+.|.-.+|.|-.+||.||||=-.|++.|++.+++++.+++|+-.+|.+.
T Consensus 105 ~lHI~S~nNFPtAAGLASSAAG~Aalv~alarly~l~~~~~els~iAR~G 154 (395)
T KOG2833|consen 105 KLHIASVNNFPTAAGLASSAAGFAALVLALARLYGLDDSPEELSRIARQG 154 (395)
T ss_pred eEEEEecCCCcchhhhhhhhhhHHHHHHHHHHHhCCCCCHHHHHHHHhcc
Confidence 46677788999999999999999999999999999999999998888654
No 55
>COG1907 Predicted archaeal sugar kinases [General function prediction only]
Probab=97.37 E-value=0.0072 Score=57.37 Aligned_cols=94 Identities=20% Similarity=0.171 Sum_probs=68.8
Q ss_pred ccEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhCCCCCcccceeeeeccCCceEEeee
Q 020779 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 92 (321)
Q Consensus 13 ~G~~i~I~s~IP~gsGLsSSAAl~VA~~~Al~~l~g~~ls~~ela~la~~aE~~~G~~~G~mDq~a~~~g~~g~~l~id~ 92 (321)
.|++|.|.+++|...||||-..+..|++.++++++|++++-.|+|...-+. .-+|+ --++-- .|++ .+|-
T Consensus 70 ~gv~I~I~~~~P~HvGLGS~TQlaLa~a~ai~~i~gl~~~~~elA~~vgRG-----~tSgi-Gv~afe---~GGF-IVDG 139 (312)
T COG1907 70 EGVKIEIRSDIPAHVGLGSTTQLALAVASAILEIYGLELSIRELAFAVGRG-----GTSGI-GVYAFE---YGGF-IVDG 139 (312)
T ss_pred CceEEEEEecCchhcCCChHHHHHHHHHHHHHHHhcCCCCHHHHHHHHccC-----Cccce-eEEEEE---ECCE-EEEC
Confidence 789999999999999999999999999999999999999999988664332 22332 112222 2333 2343
Q ss_pred C------C--Ce--eEEeecCCCceEEEEecCcc
Q 020779 93 N------P--IR--TTDVQLPAGGTFVVAHSLAE 116 (321)
Q Consensus 93 ~------~--~~--~~~i~~p~~~~~vv~~S~v~ 116 (321)
- | .. +-...+|.+|.||++-+.++
T Consensus 140 Gh~~~f~ps~~sP~I~R~dfPedW~~VlaIP~~~ 173 (312)
T COG1907 140 GHSFGFLPSSASPLIFRLDFPEDWRFVLAIPEVE 173 (312)
T ss_pred CcccCcccCCCCceeeeecCCCceEEEEEecCCC
Confidence 1 1 12 55667888999999988874
No 56
>KOG4644 consensus L-fucose kinase [Carbohydrate transport and metabolism]
Probab=97.09 E-value=0.0038 Score=63.16 Aligned_cols=101 Identities=22% Similarity=0.233 Sum_probs=75.4
Q ss_pred ccEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHH----HHHHHHHHhhCCCCCcccceeeeeccCCceE
Q 020779 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIA----QLTCECEQFIGTQSGGMDQAISIMAKSGFAE 88 (321)
Q Consensus 13 ~G~~i~I~s~IP~gsGLsSSAAl~VA~~~Al~~l~g~~ls~~ela----~la~~aE~~~G~~~G~mDq~a~~~g~~g~~l 88 (321)
.||++..+|++|-|+|||.|+-+.+-..+|+....|.....+.+. ....+.|++.-+-.|-.||.-.++- +..
T Consensus 690 ~GfeihT~SdLPHGSGLGTSSIlA~TaLaAi~~aagr~~gTeaLiHailHtvlrlEQilTTGGGWQDQ~G~im~---GIK 766 (948)
T KOG4644|consen 690 CGFEIHTSSDLPHGSGLGTSSILACTALAAICAAAGRADGTEALIHAILHTVLRLEQILTTGGGWQDQCGAIME---GIK 766 (948)
T ss_pred CceEeeccccCCCCCCcchHHHHHHHHHHHHHHhhccccchhHhHHHHHHHHHHHHHHhhcCCchhhhccchhh---hhh
Confidence 699999999999999999999999999999999998765555444 3344578877777888999876663 111
Q ss_pred EeeeC---C--CeeEEeecCC------CceEEEEecCcc
Q 020779 89 LIDFN---P--IRTTDVQLPA------GGTFVVAHSLAE 116 (321)
Q Consensus 89 ~id~~---~--~~~~~i~~p~------~~~~vv~~S~v~ 116 (321)
.-.|+ + .+.+.+.+|. +-++++++||.+
T Consensus 767 ~gr~rael~~~ie~eeiTipe~f~ekL~dhLLLVYTGKT 805 (948)
T KOG4644|consen 767 KGRCRAELNHGIEHEEITIPEEFREKLEDHLLLVYTGKT 805 (948)
T ss_pred hccchhhccCCceeeeecCCHHHHHHHhhcEEEEEeCch
Confidence 11232 1 4567777885 468999999964
No 57
>COG3890 ERG8 Phosphomevalonate kinase [Lipid metabolism]
Probab=96.00 E-value=0.019 Score=54.23 Aligned_cols=86 Identities=23% Similarity=0.209 Sum_probs=60.5
Q ss_pred CCCCChHHHHHHHHH--HHHHHHhCCCCCH-HHHHHHHHHHHH-hhCCCCCcccceeeeeccCCceEEeeeCCCeeEEe-
Q 020779 26 GSGLSSSTAFVCSST--VALMAAFGVEVPK-KEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSGFAELIDFNPIRTTDV- 100 (321)
Q Consensus 26 gsGLsSSAAl~VA~~--~Al~~l~g~~ls~-~ela~la~~aE~-~~G~~~G~mDq~a~~~g~~g~~l~id~~~~~~~~i- 100 (321)
..|||||||+++.+. +.+....+.+++. .++-++||.|-. -.|.-..+.|-.++++| ..+.-.|.|.-...+
T Consensus 107 KtGlGSSAa~~tsLt~~lfls~~~~~nvd~k~eIhklaqiAhc~aQggIGSGfDiaaA~fG---siiyrRF~p~li~~l~ 183 (337)
T COG3890 107 KTGLGSSAAVATSLTCGLFLSHANATNVDEKGEIHKLAQIAHCYAQGGIGSGFDIAAAIFG---SIIYRRFEPGLIPKLR 183 (337)
T ss_pred cCCCcchhHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhCCCCccchhhHhhhc---ceEEeecCcchhhhhH
Confidence 689999999999988 3333335556665 888899999987 55544444899999996 666655665433333
Q ss_pred -----ecCCCceEEEEecCc
Q 020779 101 -----QLPAGGTFVVAHSLA 115 (321)
Q Consensus 101 -----~~p~~~~~vv~~S~v 115 (321)
.+. ++.++..+...
T Consensus 184 qig~~nfg-~y~LmmGd~a~ 202 (337)
T COG3890 184 QIGAVNFG-DYYLMMGDQAI 202 (337)
T ss_pred hhCccccc-Ceeeeeccccc
Confidence 232 78888888876
No 58
>KOG4519 consensus Phosphomevalonate kinase [Lipid transport and metabolism]
Probab=90.94 E-value=0.54 Score=45.73 Aligned_cols=58 Identities=24% Similarity=0.355 Sum_probs=43.5
Q ss_pred CCCCCChHHHHHHHHHHHHHHHhCC----------CCC--H-HHHHHHHHHHHH-hhCCCCCcccceeeeec
Q 020779 25 LGSGLSSSTAFVCSSTVALMAAFGV----------EVP--K-KEIAQLTCECEQ-FIGTQSGGMDQAISIMA 82 (321)
Q Consensus 25 ~gsGLsSSAAl~VA~~~Al~~l~g~----------~ls--~-~ela~la~~aE~-~~G~~~G~mDq~a~~~g 82 (321)
+..|||||||+..++..++...+|. +++ . +-+-.+||.+-- ..|+-..+.|-.++++|
T Consensus 151 ~KTGLGSSAam~T~lv~~ll~sl~~~~~d~~~k~~k~d~s~~~viHnlAQ~aHC~AQGKvGSGFDV~aA~yG 222 (459)
T KOG4519|consen 151 AKTGLGSSAAMTTALVAALLHSLGVVDLDDPCKEGKFDCSDLDVIHNLAQTAHCLAQGKVGSGFDVSAAVYG 222 (459)
T ss_pred cccCccchHHHHHHHHHHHHHhhcceecCCCccccccCchHHHHHHHHHHHHHHHhcCCccCCcceehhhcc
Confidence 3679999999999999888888854 132 2 333467777765 67877777899999997
No 59
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=90.83 E-value=0.35 Score=36.49 Aligned_cols=44 Identities=16% Similarity=0.046 Sum_probs=35.1
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHhhhh-hhhhcCCCCHHh-HHHHHHHHh
Q 020779 243 FKDTVSSNLSEEDKLKKLGDLMNDSHHS-CSVLYECRYMHD-CAFHIFLHF 291 (321)
Q Consensus 243 ~~~aL~~~d~~~~~~~~lG~LMn~SH~S-lr~~ye~ScpEl-~~~~~~~~~ 291 (321)
++++|.++| ++.||++|+++|.+ ......+.+|++ ++++.+++.
T Consensus 1 m~~al~~~d-----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 46 (85)
T PF08544_consen 1 MIKALAEGD-----LELLGELMNENQENEPENYREVLTPEIDELKEAAEEN 46 (85)
T ss_dssp HHHHHHTTC-----HHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHT
T ss_pred CHHHHHCcC-----HHHHHHHHHHhhhhcchHHHHHcCHHHHHHHHHHHHC
Confidence 467899999 99999999999987 233778899996 577777554
No 60
>KOG1537 consensus Homoserine kinase [Amino acid transport and metabolism]
Probab=89.48 E-value=0.25 Score=46.57 Aligned_cols=101 Identities=18% Similarity=0.228 Sum_probs=68.6
Q ss_pred cEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH-h-------hCCCCC-------------
Q 020779 14 LFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-F-------IGTQSG------------- 72 (321)
Q Consensus 14 G~~i~I~s~IP~gsGLsSSAAl~VA~~~Al~~l~g~~ls~~ela~la~~aE~-~-------~G~~~G------------- 72 (321)
+-.+.+...||.|+|+|||++..+|-++..++...+.+++....+.+..+|+ - .|--+|
T Consensus 94 ~Tk~hvtNPiplgrGigssgta~~aGv~l~ne~a~LGlsk~~mldy~lmierhpdn~~a~mmGgf~GSflr~l~e~E~~~ 173 (355)
T KOG1537|consen 94 TTKKHVTNPIPLGRGIGSSGTAKMAGVRLVNESADLGLSKGSMLDYSLMIERHPDNAVAEMMGGFLGSFLRALLESEAKV 173 (355)
T ss_pred ceeeeecCCccccccccchhhhhhhhheecchHhhcCCccccchhHHHHHhhChHHHHHHHHhhHHHHHHHHhCHhhhhh
Confidence 4566788899999999999999999999999999888988888777776663 1 122111
Q ss_pred ---cccce-eeeeccCCceEEeeeCCCee-EEeecC--CCceEEEEecCcc
Q 020779 73 ---GMDQA-ISIMAKSGFAELIDFNPIRT-TDVQLP--AGGTFVVAHSLAE 116 (321)
Q Consensus 73 ---~mDq~-a~~~g~~g~~l~id~~~~~~-~~i~~p--~~~~~vv~~S~v~ 116 (321)
-.|+. -..+| |..+....-|.+. +++.+| +++.|+++-+..+
T Consensus 174 ~~~~ad~ilp~~~g--g~~li~~lpP~dlg~~~r~pw~~~lk~i~viP~Fe 222 (355)
T KOG1537|consen 174 SGYHADNILPAIMG--GFVLIRNLPPLDLGKPLRFPWDKDLKFILVIPDFE 222 (355)
T ss_pred cCCCHHHhcccccC--CeeeecCCCcccccccccCCCCccceEEEEecccc
Confidence 13443 24554 3334444444444 555555 5788888877664
No 61
>TIGR02957 SigX4 RNA polymerase sigma-70 factor, TIGR02957 family. This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building and bidirectional best hits, to represent a conserved family. This family is found in a limited number of bacterial lineages. This family includes apparent paralogous expansion in Streptomyces coelicolor A3(2), and multiple copies in Mycobacterium smegmatis MC2, Streptomyces avermitilis MA-4680 and Nocardia farcinica IFM10152.
Probab=63.11 E-value=15 Score=34.58 Aligned_cols=61 Identities=18% Similarity=0.202 Sum_probs=40.7
Q ss_pred CCCHHHHHHHhhhhhhHHhhccCCchhhhhhhhhhhhhhhhhhhhh-----------Hh-HHHHHHHHHHhcCCCChHHH
Q 020779 190 PYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYS-----------EA-KRVHAFKDTVSSNLSEEDKL 257 (321)
Q Consensus 190 ~~t~eel~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~Ra~Hv~t-----------E~-~RV~~~~~aL~~~d~~~~~~ 257 (321)
+++.+|+++.+|++...+.. ...||+.-+. |. .-|..|.+|+++|| +
T Consensus 124 g~s~~EIA~~lg~s~~tVr~----------------~l~RAr~~Lr~~~~~~~~~~~~~~~~~~~f~~a~~~gD-----~ 182 (281)
T TIGR02957 124 DYPYEEIASIVGKSEANCRQ----------------LVSRARRHLDARRPRFEVSREESRQLLERFVEAAQTGD-----L 182 (281)
T ss_pred CCCHHHHHHHHCCCHHHHHH----------------HHHHHHHHHHhhCCCCCCChHHHHHHHHHHHHHHHhCC-----H
Confidence 57788999999887664432 1222222222 22 23679999999999 9
Q ss_pred HHHHHHHHHhhhhh
Q 020779 258 KKLGDLMNDSHHSC 271 (321)
Q Consensus 258 ~~lG~LMn~SH~Sl 271 (321)
+.|..|+.+.=...
T Consensus 183 ~~l~~lL~~dv~~~ 196 (281)
T TIGR02957 183 DGLLELLAEDVVLY 196 (281)
T ss_pred HHHHHHHhhceEEE
Confidence 99999998765433
No 62
>PRK09635 sigI RNA polymerase sigma factor SigI; Provisional
Probab=57.33 E-value=20 Score=34.08 Aligned_cols=58 Identities=17% Similarity=0.163 Sum_probs=39.3
Q ss_pred CCCHHHHHHHhhhhhhHHhhccCCchhhhhhhhhhhhhhhhhhhhhH------------hHHHHHHHHHHhcCCCChHHH
Q 020779 190 PYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSE------------AKRVHAFKDTVSSNLSEEDKL 257 (321)
Q Consensus 190 ~~t~eel~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~Ra~Hv~tE------------~~RV~~~~~aL~~~d~~~~~~ 257 (321)
+++.+|+.+.+|++...+.+ ...||+.-+.+ ..-|..|.+|+++|| +
T Consensus 134 g~s~~EIA~~Lgis~~tVr~----------------~l~RAr~~Lr~~~~~~~~~~~~~~~~~~~f~~a~~~gd-----~ 192 (290)
T PRK09635 134 GLPYQQIATTIGSQASTCRQ----------------LAHRARRKINESRIAASVEPAQHRVVTRAFIEACSNGD-----L 192 (290)
T ss_pred CCCHHHHHHHHCcCHHHHHH----------------HHHHHHHHHHhhCCCCCCChHHHHHHHHHHHHHHHhCC-----H
Confidence 47788999999987665432 22233322222 234779999999999 9
Q ss_pred HHHHHHHHHhh
Q 020779 258 KKLGDLMNDSH 268 (321)
Q Consensus 258 ~~lG~LMn~SH 268 (321)
+.|-.|+.+-=
T Consensus 193 ~~l~~ll~~d~ 203 (290)
T PRK09635 193 DTLLEVLDPGV 203 (290)
T ss_pred HHHHHHhhhhh
Confidence 99999985543
No 63
>PRK09636 RNA polymerase sigma factor SigJ; Provisional
Probab=53.23 E-value=27 Score=32.85 Aligned_cols=65 Identities=17% Similarity=0.074 Sum_probs=39.6
Q ss_pred CCCHHHHHHHhhhhhhHHhhccCCchhhhhhhhhhhhhhhh--hhhhhHhHH--HHHHHHHHhcCCCChHHHHHHHHHHH
Q 020779 190 PYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRA--AHVYSEAKR--VHAFKDTVSSNLSEEDKLKKLGDLMN 265 (321)
Q Consensus 190 ~~t~eel~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~Ra--~Hv~tE~~R--V~~~~~aL~~~d~~~~~~~~lG~LMn 265 (321)
+++.+|+++.+|++...+...+- + ..-.+++.. ..+-.|..+ |..|.+++.+|| ++.+..|+.
T Consensus 131 g~s~~EIA~~lg~s~~tVk~~l~-------R-Ar~~Lr~~~~~~~~~~~~~~~~v~~f~~A~~~gD-----~~~l~~Lla 197 (293)
T PRK09636 131 GVPFDEIASTLGRSPAACRQLAS-------R-ARKHVRAARPRFPVSDEEGAELVEAFFAALASGD-----LDALVALLA 197 (293)
T ss_pred CCCHHHHHHHHCCCHHHHHHHHH-------H-HHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhCC-----HHHHHHHHh
Confidence 57788999999987665432210 0 000111111 112333333 779999999999 999999987
Q ss_pred Hh
Q 020779 266 DS 267 (321)
Q Consensus 266 ~S 267 (321)
+.
T Consensus 198 ~D 199 (293)
T PRK09636 198 PD 199 (293)
T ss_pred hC
Confidence 65
No 64
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=37.28 E-value=46 Score=35.07 Aligned_cols=90 Identities=17% Similarity=0.205 Sum_probs=61.9
Q ss_pred HHHHHhhccCCCCHHHHHHHhhhhh-----hHHhhccCCchhhhhhhhhhhhhhhhhhhhh---------HhHHHHHHHH
Q 020779 180 FAVKEFLRKEPYTALDIEKITEEKL-----TSIFANSSSSLDVLNAAKQYKLHQRAAHVYS---------EAKRVHAFKD 245 (321)
Q Consensus 180 ~~v~~~l~~~~~t~eel~~~~~~~~-----~~~~~~~~~~~~v~~~~~~~~l~~Ra~Hv~t---------E~~RV~~~~~ 245 (321)
..|.+++..+|.+.+++...+-... ..|-..+...+|+++....|+..+|+-|.|. |.+-+...+.
T Consensus 321 ~~V~~y~~~eg~s~~q~~~~i~s~~~~~~~~~l~n~~~~~Lp~R~~~siy~~~rR~y~~FE~~rg~wt~ee~eeL~~l~~ 400 (607)
T KOG0051|consen 321 NFVNEYLANEGWSSEQFCQRIWSKDWKTIIRNLYNNLYKLLPYRDRKSIYHHLRRAYTPFENKRGKWTPEEEEELKKLVV 400 (607)
T ss_pred HHHHHHHHhhCcchhhhhhheeccCcchHHHHHHHhhhhhcCcccchhHHHHHHhcCCccccccCCCCcchHHHHHHHHH
Confidence 6677888888888888877664332 2344444456777777777777778888887 4444433333
Q ss_pred HHhcCCCChHHHHHHHHHHHHhhhhhhhhc
Q 020779 246 TVSSNLSEEDKLKKLGDLMNDSHHSCSVLY 275 (321)
Q Consensus 246 aL~~~d~~~~~~~~lG~LMn~SH~Slr~~y 275 (321)
-. .++ |..+|++|..+=.+|++-+
T Consensus 401 ~~-g~~-----W~~Ig~~lgr~P~~crd~w 424 (607)
T KOG0051|consen 401 EH-GND-----WKEIGKALGRMPMDCRDRW 424 (607)
T ss_pred Hh-ccc-----HHHHHHHHccCcHHHHHHH
Confidence 22 234 9999999999999999655
No 65
>KOG1537 consensus Homoserine kinase [Amino acid transport and metabolism]
Probab=34.67 E-value=58 Score=31.13 Aligned_cols=52 Identities=17% Similarity=0.114 Sum_probs=34.8
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHhCCC-------CCHHHHHHHHHHHHHhhCCCCCc
Q 020779 22 FFNLGSGLSSSTAFVCSSTVALMAAFGVE-------VPKKEIAQLTCECEQFIGTQSGG 73 (321)
Q Consensus 22 ~IP~gsGLsSSAAl~VA~~~Al~~l~g~~-------ls~~ela~la~~aE~~~G~~~G~ 73 (321)
-+|.++||++|++.+-.-..+.++.+|-. ++.+|.-.....+.+..-.+.|+
T Consensus 130 Glsk~~mldy~lmierhpdn~~a~mmGgf~GSflr~l~e~E~~~~~~~ad~ilp~~~gg 188 (355)
T KOG1537|consen 130 GLSKGSMLDYSLMIERHPDNAVAEMMGGFLGSFLRALLESEAKVSGYHADNILPAIMGG 188 (355)
T ss_pred CCccccchhHHHHHhhChHHHHHHHHhhHHHHHHHHhCHhhhhhcCCCHHHhcccccCC
Confidence 57899999999999988888888888753 33444333333444444455555
No 66
>PRK08241 RNA polymerase factor sigma-70; Validated
Probab=32.12 E-value=78 Score=30.23 Aligned_cols=65 Identities=9% Similarity=0.191 Sum_probs=39.1
Q ss_pred CCCCHHHHHHHhhhhhhHHhhccCCchhhhhhhhhhhhhhh-------hhhhh-hHhHH-HHHHHHHHhcCCCChHHHHH
Q 020779 189 EPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQR-------AAHVY-SEAKR-VHAFKDTVSSNLSEEDKLKK 259 (321)
Q Consensus 189 ~~~t~eel~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~R-------a~Hv~-tE~~R-V~~~~~aL~~~d~~~~~~~~ 259 (321)
++++.+|+++.+|++...+...+.. ..-.++++ +.++. .++.+ |.++.+++.+|| ++.
T Consensus 168 ~g~s~~EIA~~lgis~~tVk~~l~R--------Ar~~Lr~~~~~~~~~~~~~~~~~~~~~v~~~~~A~~~gD-----~~~ 234 (339)
T PRK08241 168 LGWSAAEVAELLDTSVAAVNSALQR--------ARATLAERGPSAADTLREPDDPEERALLARYVAAFEAYD-----VDA 234 (339)
T ss_pred hCCCHHHHHHHhCCCHHHHHHHHHH--------HHHHHhhcCCCcccccCCCCChHHHHHHHHHHHHHhcCC-----HHH
Confidence 3577889999999876654322110 00012221 13334 33333 579999999999 888
Q ss_pred HHHHHHH
Q 020779 260 LGDLMND 266 (321)
Q Consensus 260 lG~LMn~ 266 (321)
+..|+.+
T Consensus 235 l~~lla~ 241 (339)
T PRK08241 235 LVALLTE 241 (339)
T ss_pred HHHHhcC
Confidence 8888755
No 67
>TIGR02960 SigX5 RNA polymerase sigma-70 factor, TIGR02960 family. This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building, bidirectional best hits and one-to-a-genome distribution, to represent a conserved family.
Probab=28.63 E-value=1.1e+02 Score=28.85 Aligned_cols=61 Identities=15% Similarity=0.181 Sum_probs=38.1
Q ss_pred CCCHHHHHHHhhhhhhHHhhccCCchhhhhhhhhhhhhhhhhhh------------hh-Hh-HHHHHHHHHHhcCCCChH
Q 020779 190 PYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHV------------YS-EA-KRVHAFKDTVSSNLSEED 255 (321)
Q Consensus 190 ~~t~eel~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~Ra~Hv------------~t-E~-~RV~~~~~aL~~~d~~~~ 255 (321)
+++.+|+++.+|++...+...+. +.+++.+-. .. ++ .-|.++.+++.+||
T Consensus 158 g~s~~EIA~~lgis~~tV~~~l~------------Rar~~Lr~~l~~~~~~~~~~~~~~~~~~~v~~~~~a~~~gD---- 221 (324)
T TIGR02960 158 GWRAAETAELLGTSTASVNSALQ------------RARATLDEVGPSARDDQLAQPPSPEEQDLLERYIAAFESYD---- 221 (324)
T ss_pred CCCHHHHHHHHCCCHHHHHHHHH------------HHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCC----
Confidence 46778999999887665432211 122222221 21 22 23679999999999
Q ss_pred HHHHHHHHHHHh
Q 020779 256 KLKKLGDLMNDS 267 (321)
Q Consensus 256 ~~~~lG~LMn~S 267 (321)
++.+..|+-+.
T Consensus 222 -~~~l~~Lla~D 232 (324)
T TIGR02960 222 -LDALTALLHED 232 (324)
T ss_pred -HHHHHHHhcCC
Confidence 99988888664
No 68
>PF03208 PRA1: PRA1 family protein; InterPro: IPR004895 This family includes yeast hypothetical proteins and the uncharacterised rat prenylated rab acceptor protein PRA1.
Probab=27.25 E-value=36 Score=28.80 Aligned_cols=25 Identities=36% Similarity=0.434 Sum_probs=20.7
Q ss_pred CCccchhhhhhHHHHHHHHhhcccC
Q 020779 296 NSKILWPFCLFCVPLVLLVLHASMR 320 (321)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (321)
-+-..+-++.+++++++.++||++|
T Consensus 113 ~~~~~~l~~~l~~~~~lvl~HA~~r 137 (153)
T PF03208_consen 113 TSAGLTLFWSLGASVLLVLLHASFR 137 (153)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHhc
Confidence 4446677888899999999999987
No 69
>PF07359 LEAP-2: Liver-expressed antimicrobial peptide 2 precursor (LEAP-2); InterPro: IPR009955 This family consists of several mammalian liver-expressed antimicrobial peptide 2 (LEAP-2) sequences. LEAP-2 is a cysteine-rich, and cationic protein. LEAP-2 contains a core structure with two disulphide bonds formed by cysteine residues in relative 1-3 and 2-4 positions. LEAP-2 is synthesised as a 77-residue precursor, which is predominantly expressed in the liver and highly conserved among mammals. The largest native LEAP-2 form of 40 amino acid residues is generated from the precursor at a putative cleavage site for a furin-like endoprotease. In contrast to smaller LEAP-2 variants, this peptide exhibits dose-dependent antimicrobial activity against selected microbial model organisms []. The exact function of this family is unclear.; GO: 0042742 defense response to bacterium; PDB: 2L1Q_A.
Probab=24.38 E-value=23 Score=27.15 Aligned_cols=15 Identities=27% Similarity=0.330 Sum_probs=10.9
Q ss_pred HHhhhhhhhhcCCCC
Q 020779 265 NDSHHSCSVLYECRY 279 (321)
Q Consensus 265 n~SH~Slr~~ye~Sc 279 (321)
.-.+.||||+|||++
T Consensus 48 kP~GAsCrd~~EC~T 62 (77)
T PF07359_consen 48 KPIGASCRDNSECST 62 (77)
T ss_dssp B-TTSB-SSGGGBTT
T ss_pred CcCcchhccchhhhH
Confidence 456789999999985
No 70
>PF08429 PLU-1: PLU-1-like protein; InterPro: IPR013637 This domain is found in the central region of lysine-specific demethylases, which are nuclear proteins that may have a role in DNA-binding and transcription, and are associated with malignant cancer phenotypes []. The domain is also found in various other Jumonji/ARID domain-containing proteins (see IPR013129 from INTERPRO, IPR001606 from INTERPRO). ; GO: 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0055114 oxidation-reduction process
Probab=20.50 E-value=6.6e+02 Score=23.86 Aligned_cols=93 Identities=13% Similarity=0.018 Sum_probs=0.0
Q ss_pred CCcHHHHHHhh-ccCCCCHHHHHHHhhhhhhHHhhccCCchhhhhhhhhhhhhhhhhhhhhHhHHHHHHHHHHhcCCCCh
Q 020779 176 SDPVFAVKEFL-RKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEE 254 (321)
Q Consensus 176 ~~~~~~v~~~l-~~~~~t~eel~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~Ra~Hv~tE~~RV~~~~~aL~~~d~~~ 254 (321)
..|.+.+++.+ .+...+.+++..++ .=-+.+..+.+ .+..+.+.+|.++....+-+..+-.+....
T Consensus 1 d~W~~k~~~~l~~~~k~~L~~l~~Ll-----~e~e~~~~~~~--------~l~~~L~~~v~~a~~~~~~a~~~l~~k~~~ 67 (335)
T PF08429_consen 1 DTWAEKVKEALEESPKPSLKELRSLL-----SEGEKIPFPLP--------ELLENLRNFVKRAESWVEKAQQLLSRKQRT 67 (335)
T ss_pred ChhHHHHHHHHhcCCCCCHHHHHHHH-----HHHHhCCCCCH--------HHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q ss_pred ---------------HHHHHHHHHHHHhhhhhhhhcCCCCHHhHHHH
Q 020779 255 ---------------DKLKKLGDLMNDSHHSCSVLYECRYMHDCAFH 286 (321)
Q Consensus 255 ---------------~~~~~lG~LMn~SH~Slr~~ye~ScpEl~~~~ 286 (321)
-.++.+..|+.+.. ...|+|||++.+.
T Consensus 68 r~~~~~~~~~~~~~~~~l~~l~~Ll~e~~-----~L~~~~pEi~~L~ 109 (335)
T PF08429_consen 68 RRRNGKAEDQKSRNKLTLEELEALLEEIE-----SLPFDCPEIDQLK 109 (335)
T ss_pred cccCCccccccccccCCHHHHHHHHHHHh-----cCCeeCchHHHHH
Done!