Query 020779
Match_columns 321
No_of_seqs 211 out of 1580
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 08:04:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020779.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020779hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3v2u_C Protein GAL3; rossmann 100.0 2.6E-56 8.8E-61 450.0 20.8 276 11-290 144-449 (520)
2 2a2c_A N-acetylgalactosamine k 100.0 5.1E-46 1.7E-50 372.2 26.3 262 12-291 147-412 (478)
3 1pie_A Galactokinase; galactos 100.0 2.1E-36 7.3E-41 297.1 23.9 215 13-291 140-357 (419)
4 1wuu_A Galactokinase; galactos 100.0 1.1E-35 3.8E-40 290.1 20.5 211 12-291 129-342 (399)
5 2cz9_A Probable galactokinase; 100.0 3.3E-33 1.1E-37 266.3 21.4 207 12-291 85-293 (350)
6 3k85_A D-glycero-D-manno-hepto 100.0 1.7E-28 5.7E-33 236.9 12.4 182 12-290 96-286 (357)
7 1kvk_A MK, mevalonate kinase; 99.9 8.4E-25 2.9E-29 212.8 16.1 182 12-291 126-325 (395)
8 3gon_A Phosphomevalonate kinas 99.9 2.9E-24 1E-28 202.3 16.1 174 11-291 83-284 (335)
9 3k17_A LIN0012 protein; protei 99.9 4.3E-23 1.5E-27 199.7 19.1 177 11-291 95-307 (365)
10 2pg9_A Phosphomevalonate kinas 99.9 4.6E-22 1.6E-26 190.4 18.3 174 11-291 85-286 (337)
11 2x7i_A Mevalonate kinase; tran 99.9 2.8E-22 9.6E-27 187.9 14.7 177 9-290 81-259 (308)
12 2hfs_A Mevalonate kinase, puta 99.9 1.2E-20 4.3E-25 178.5 18.9 176 13-290 96-275 (332)
13 2oi2_A Mevalonate kinase; enzy 99.9 1.9E-20 6.6E-25 173.5 18.3 173 12-291 72-246 (292)
14 4hac_A Mevalonate kinase; GHMP 99.8 9.5E-20 3.2E-24 173.1 19.6 97 11-116 94-191 (321)
15 1h72_C HK, homoserine kinase; 99.8 1E-19 3.5E-24 169.4 16.3 169 13-291 75-248 (296)
16 1kkh_A Mevalonate kinase; mixe 99.8 3.7E-19 1.3E-23 167.3 16.9 99 12-116 97-202 (317)
17 2gs8_A Mevalonate pyrophosphat 99.7 5.2E-16 1.8E-20 146.4 16.3 158 13-282 91-250 (317)
18 1fi4_A Mevalonate 5-diphosphat 99.4 2.2E-12 7.5E-17 126.7 17.3 159 12-281 121-290 (416)
19 3hul_A HSK, HK, homoserine kin 99.4 3.1E-12 1.1E-16 120.2 13.0 94 11-115 68-164 (298)
20 2v8p_A 4-diphosphocytidyl-2-C- 99.3 9.1E-12 3.1E-16 114.9 11.2 91 13-115 80-170 (271)
21 2ww4_A 4-diphosphocytidyl-2C-m 99.2 6.8E-12 2.3E-16 116.9 7.3 90 13-115 88-177 (283)
22 3qt5_A Mevalonate diphosphate 99.2 7.3E-10 2.5E-14 105.6 17.2 91 13-115 93-190 (332)
23 3pyf_A 4-diphosphocytidyl-2-C- 99.1 1.3E-10 4.6E-15 109.5 10.5 91 13-115 87-177 (306)
24 1uek_A 4-(cytidine 5'-diphosph 99.1 2.3E-10 7.8E-15 105.5 8.7 87 13-115 75-161 (275)
25 3lto_A Mevalonate diphosphate 98.9 2.4E-08 8.1E-13 95.1 17.0 51 13-63 91-146 (323)
26 2hke_A Diphosphomevalonate dec 98.9 2.7E-08 9.4E-13 96.3 14.1 59 12-82 95-153 (380)
27 3f0n_A Mevalonate pyrophosphat 98.6 4.8E-07 1.6E-11 88.6 13.8 49 13-64 122-170 (414)
28 3mn2_A Probable ARAC family tr 35.7 54 0.0018 24.4 4.9 58 181-251 10-67 (108)
29 3ub0_B Non-structural protein 34.4 15 0.00052 27.6 1.4 32 273-305 6-37 (87)
30 3lsg_A Two-component response 32.5 70 0.0024 23.5 5.1 60 180-251 9-68 (103)
31 2l1q_A Liver-expressed antimic 32.2 7.9 0.00027 25.0 -0.4 12 268-279 14-25 (40)
32 2k9s_A Arabinose operon regula 25.1 85 0.0029 23.2 4.4 60 180-251 10-69 (107)
33 2ahm_A Replicase NSP7, replica 22.3 16 0.00056 27.5 -0.3 31 274-305 8-38 (88)
34 3oou_A LIN2118 protein; protei 22.2 1.2E+02 0.0041 22.4 4.8 59 180-251 12-70 (108)
35 3oio_A Transcriptional regulat 20.8 98 0.0034 23.1 4.0 50 190-251 23-72 (113)
No 1
>3v2u_C Protein GAL3; rossmann fold, GHMP superfamily, transcription regulation, transcription; HET: GLA ATP; 2.10A {Saccharomyces cerevisiae} PDB: 3v5r_A 2aj4_A*
Probab=100.00 E-value=2.6e-56 Score=450.00 Aligned_cols=276 Identities=29% Similarity=0.415 Sum_probs=241.4
Q ss_pred cCccEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHh---CCCCCHHHHHHHHHHHHHhhCCCCCcccceeeeeccCCce
Q 020779 11 KFQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAF---GVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFA 87 (321)
Q Consensus 11 ~~~G~~i~I~s~IP~gsGLsSSAAl~VA~~~Al~~l~---g~~ls~~ela~la~~aE~~~G~~~G~mDq~a~~~g~~g~~ 87 (321)
++.||++.|.|+||+|+|| |||++||++.|++.++ +.++++.+++++|+++|+++|.|||+|||+++++|++|++
T Consensus 144 ~~~G~~i~i~s~vP~gsGL--SAA~~va~~~Al~~~~~g~~~~l~~~~la~la~~aE~~vG~~~G~mDQ~as~~G~~g~~ 221 (520)
T 3v2u_C 144 PLVGAQIFCQSDIPTGGGL--SSAFTCAAALATIRANMGKNFDISKKDLTRITAVAEHYVGVNNGGMDQATSVYGEEDHA 221 (520)
T ss_dssp CCCCEEEEEEECCCTTSSH--HHHHHHHHHHHHHHHHHCTTCCCBHHHHHHHHTTGGGGGTCCCCSHHHHHHHHCBTTBE
T ss_pred CCCceEEEEecCCCCCCCH--HHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHhCCCCchhhHHHHHhCCCCeE
Confidence 4689999999999999999 9999999999999999 7789999999999999999999999999999999999999
Q ss_pred EEeeeCC-CeeEEeecCC----CceEEEEecCccchhhcccccchHHHHHHHHHHHHHHHHHhCCCchh----hhcccCc
Q 020779 88 ELIDFNP-IRTTDVQLPA----GGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQE----AISKVKT 158 (321)
Q Consensus 88 l~id~~~-~~~~~i~~p~----~~~~vv~~S~v~~~k~~~a~~~Yn~Rv~Ec~~Aa~~L~~~~gi~~~~----~~~~~~~ 158 (321)
++|||++ ++++++|+|+ ++.|+|+||+++++||.+++++||.||+||+.|+++|++++|++... ......+
T Consensus 222 l~id~~~~l~~~~v~~p~~~~~~~~~vI~ns~v~~~k~~la~s~YN~Rr~eCe~Aa~~L~~~~g~~~~~~~~~~~~~~~s 301 (520)
T 3v2u_C 222 LYVEFRPKLKATPFKFPQLKNHEISFVIANTLVKSNKFETAPTNYNLRVIEVTVAANALATRYSVALPSHKDNSNSERGN 301 (520)
T ss_dssp EEEECSSSCEEEEECCCCCSSCEEEEEEEECCCCCCHHHHTTTTHHHHHHHHHHHHHHHHHHTTBCCCCCCSCSSCTTCC
T ss_pred EEEEcCCCceeEEeeCCCccCCCeEEEEEECCCcccccccccchhhHHHHHHHHHHHHHHHhhCCccccccccccccccc
Confidence 9999999 9999999997 89999999999999999999999999999999999999998875210 0112358
Q ss_pred chhhHhHHhh--------hh-----cCCCCCCcHHHHHHhhcc--CCCCHHHHHHHhhhhhhHHhhccCCchhhhhhhhh
Q 020779 159 LSDVEGLCVA--------FA-----CKNGSSDPVFAVKEFLRK--EPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQ 223 (321)
Q Consensus 159 Lrdv~~~~~~--------~~-----~~~~~~~~~~~v~~~l~~--~~~t~eel~~~~~~~~~~~~~~~~~~~~v~~~~~~ 223 (321)
|||+++.++. |. +..++.+|++.+++.+.+ ++||++|+++.+|++.+++.++|++.+|+ +.+.
T Consensus 302 LRdv~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~yt~~e~~~~l~~~~~~l~~~~l~~~~~--~~~~ 379 (520)
T 3v2u_C 302 LRDFMDAYYARYENQAQPWNGDIGTGIERLLKMLQLVEESFSRKKSGFTVHEASTALNCSREEFTRDYLTTFPV--RFQV 379 (520)
T ss_dssp HHHHHHHHHHHHCTTSCCCSSCHHHHHHHHHHHHHHHHHHHTTCTTCBCHHHHHHHTTSCHHHHHHHHTSSSCE--EESC
T ss_pred HHHHhHhhhhhccccccccccchhhHHHHHHHHHHHHHHHhhhccccccHHHHHHhhcCChhhhhhhhcccccc--cccc
Confidence 9999875431 10 012345677778887765 48999999999998888898999999997 7788
Q ss_pred hhhhhhhhhhhhHhHHHHHHHHHHhcCC--CChHHHHHHHHHHHHhhhhhhhhcCCCCHHhH-HHHHHHH
Q 020779 224 YKLHQRAAHVYSEAKRVHAFKDTVSSNL--SEEDKLKKLGDLMNDSHHSCSVLYECRYMHDC-AFHIFLH 290 (321)
Q Consensus 224 ~~l~~Ra~Hv~tE~~RV~~~~~aL~~~d--~~~~~~~~lG~LMn~SH~Slr~~ye~ScpEl~-~~~~~~~ 290 (321)
|.+|+||+|||+|++||++|+++|++++ ++++++++||+||++||.|||++|||||||+| +++++++
T Consensus 380 ~~l~~RA~HVv~E~~Rv~~~~~al~~~~~~~~~~d~~~lg~lm~~sH~slr~~~~vS~peld~lv~~a~~ 449 (520)
T 3v2u_C 380 LKLYQRAKHVYSESLRVLKALKMMTSATFHTDEDFFTDFGRLMNESQASCDKLYECSCIETNQICSIALA 449 (520)
T ss_dssp BCHHHHHHHHHHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCcccchhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHh
Confidence 8999999999999999999999999974 22346999999999999999999999999986 6688876
No 2
>2a2c_A N-acetylgalactosamine kinase; galactokinase, , transferase; HET: NG1 ADP; 1.65A {Homo sapiens} PDB: 2a2d_A*
Probab=100.00 E-value=5.1e-46 Score=372.19 Aligned_cols=262 Identities=38% Similarity=0.562 Sum_probs=237.4
Q ss_pred CccEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhCCCCCcccceeeeeccCCceEEee
Q 020779 12 FQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELID 91 (321)
Q Consensus 12 ~~G~~i~I~s~IP~gsGLsSSAAl~VA~~~Al~~l~g~~ls~~ela~la~~aE~~~G~~~G~mDq~a~~~g~~g~~l~id 91 (321)
.+|+++.|.|+||+|+|||||||++||++.|++.++|.++++++++++|+.+|+++|.++|+|||+++++|++|+++++|
T Consensus 147 ~~g~~i~i~s~IP~g~GLgSSAA~~va~~~al~~~~~~~ls~~~l~~la~~~E~~~g~~~g~~D~~a~~~G~~g~~~~i~ 226 (478)
T 2a2c_A 147 LTGMNCLVDGNIPPSSGLSSSSALVCCAGLVTLTVLGRNLSKVELAEICAKSERYIGTEGGGMDQSISFLAEEGTAKLIE 226 (478)
T ss_dssp CCCEEEEEEECSCTTSSSCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHGGGTCCCCSHHHHHHHHCBTTBEEEEE
T ss_pred CCceEEEEECCCCCCCCchHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhhcCCCCccHHHHHHHhccCCcEEEEE
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCeeEEeecCCCceEEEEecCccchhhcccccchHHHHHHHHHHHHHHHHHhCCCchhhhcccCcchhhHhHHhhhhc
Q 020779 92 FNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFAC 171 (321)
Q Consensus 92 ~~~~~~~~i~~p~~~~~vv~~S~v~~~k~~~a~~~Yn~Rv~Ec~~Aa~~L~~~~gi~~~~~~~~~~~Lrdv~~~~~~~~~ 171 (321)
|++..++++++|+++.|+|+||++++++. .+.+||.||.||+.|+++|++++|+++ .++++|||+++.+
T Consensus 227 f~~~~~~~~~~~~~~~~vi~~s~~~~~t~--~t~~yn~r~~e~~~A~~~L~~~~~~~~----~~~~~l~d~~~~~----- 295 (478)
T 2a2c_A 227 FSPLRATDVKLPSGAVFVIANSCVEMNKA--ATSHFNIRVMECRLAAKLLAKYKSLQW----DKVLRLEEVQAKL----- 295 (478)
T ss_dssp TTTTEEEEECCCTTEEEEEEECCCCCCGG--GSSHHHHHHHHHHHHHHHHHHHTTCCT----TTCCCHHHHHHHH-----
T ss_pred cCCCceEEecCCCCcEEEEEeCCCccccc--ccchhHHHHHHHHHHHHHHHhhhcccc----cccchHHhhhhhh-----
Confidence 99999999999989999999999953322 348999999999999999999987753 4577999997654
Q ss_pred CCCCCCcHHHHHHhhccCCCCHHHHHHHhhhhhhHHhhccCCchhhhhhhhhhhhhhhhhhhhhHhHHHHHHHHHHhc--
Q 020779 172 KNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSS-- 249 (321)
Q Consensus 172 ~~~~~~~~~~v~~~l~~~~~t~eel~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~Ra~Hv~tE~~RV~~~~~aL~~-- 249 (321)
+.++.+|++.+++.+.+++++.+++.+.+|++.+++.+.+++.+++ ..+.+++++|++|+++|+.||.+++++|++
T Consensus 296 ~~~~~~~v~~v~~~~~~~~~~~~~i~~~l~~~~~~~~~~~l~~~~~--~~~~~~~~~ra~h~~~e~~rv~~~~~aL~~~~ 373 (478)
T 2a2c_A 296 GISLEEMLLVTEDALHPEPYNPEEICRCLGISLEELRTQILSPNTQ--DVLIFKLYQRAKHVYSEAARVLQFKKICEEAP 373 (478)
T ss_dssp TCCHHHHHHHHHHHSCSSCBCHHHHHHHHTCCHHHHHHHTSCGGGT--TCCCBCHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred cccHHHHHHHHHHhcccccccHHHHHHHhCccHHHHHhhccccccc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4566788999999999888999999999998888888888887774 556678999999999999999999999998
Q ss_pred -CCCChHHHHHHHHHHHHhhhhhhhhcCCCCHHhH-HHHHHHHh
Q 020779 250 -NLSEEDKLKKLGDLMNDSHHSCSVLYECRYMHDC-AFHIFLHF 291 (321)
Q Consensus 250 -~d~~~~~~~~lG~LMn~SH~Slr~~ye~ScpEl~-~~~~~~~~ 291 (321)
+| ++.||++|++||.|||++|+|||||+| +++++++.
T Consensus 374 ~~d-----~~~lg~lm~~sh~slr~l~~vs~peld~l~~~a~~~ 412 (478)
T 2a2c_A 374 ENM-----VQLLGELMNQSHMSCRDMYECSCPELDQLVDICRKF 412 (478)
T ss_dssp TTH-----HHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHT
T ss_pred ccH-----HHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHhC
Confidence 77 999999999999999999999999975 77888773
No 3
>1pie_A Galactokinase; galactose, galactosemia, transferase; HET: GLA; 2.10A {Lactococcus lactis} SCOP: d.14.1.5 d.58.26.7
Probab=100.00 E-value=2.1e-36 Score=297.11 Aligned_cols=215 Identities=24% Similarity=0.254 Sum_probs=188.3
Q ss_pred ccEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH-hhCCCCCcccceeeeeccCCceEEee
Q 020779 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSGFAELID 91 (321)
Q Consensus 13 ~G~~i~I~s~IP~gsGLsSSAAl~VA~~~Al~~l~g~~ls~~ela~la~~aE~-~~G~~~G~mDq~a~~~g~~g~~l~id 91 (321)
+|+++.|.|+||+|+|||||||+++|++.|+++++|.++++++++++|+++|+ ++|.|||+|||+++++|+.+.++++|
T Consensus 140 ~g~~i~i~s~IP~gaGLGSSaA~~vA~~~al~~l~g~~ls~~el~~la~~~E~~~~G~~~G~~D~~~~~~Gg~~~~~~~d 219 (419)
T 1pie_A 140 KGFELLIKGEIPTASGLSSSASLELLVGVVLDDLFNLNVPRLELVQLGQKTENDYIGVNSGILDQFAIGFGEVKKAIELD 219 (419)
T ss_dssp SCEEEEEEECSCTTSSSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTTCCCCCSHHHHHHHHCBTTEEEEEE
T ss_pred CCEEEEEECCCCCCCChhHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCccchhHHHHHhccCCeEEEee
Confidence 79999999999999999999999999999999999999999999999999998 99999999999999999888999999
Q ss_pred eCCCeeEEeecC-CCceEEEEecCccchhhcccccchHHHHHHHHHHHHHHHHHhCCCchhhhcccCcchhhHhHHhhhh
Q 020779 92 FNPIRTTDVQLP-AGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFA 170 (321)
Q Consensus 92 ~~~~~~~~i~~p-~~~~~vv~~S~v~~~k~~~a~~~Yn~Rv~Ec~~Aa~~L~~~~gi~~~~~~~~~~~Lrdv~~~~~~~~ 170 (321)
+++..++++++| +++.++|++|++ ++.+.+++||.|+.||+.|.++|++..+ +..|+++.+
T Consensus 220 ~~~~~~~~l~~~~~~~~~vl~~~~~---~~~t~~~~y~~r~~~~~~a~~~l~~~~~---------v~~l~~~~~------ 281 (419)
T 1pie_A 220 CNTLKYEMVPVELRDYDIVIMNTNK---PRALTESKYNERFAETREALKRMQTRLD---------IQSLGELSN------ 281 (419)
T ss_dssp TTTCCEEEEECCCTTEEEEEEECCC---CCCTTCHHHHHHHHHHHHHHHHHHHHCC---------CSSGGGCCH------
T ss_pred cCCCceEEeecCCCCcEEEEEECCC---ccccccchHHHHHHHHHHHHHHHhhccc---------cCchhhCCH------
Confidence 999999999998 689999999999 6888889999999999999999986522 346665532
Q ss_pred cCCCCCCcHHHHHHhhccCCCCHHHHHHHhhhhhhHHhhccCCchhhhhhhhhhhhhhhhhhhhhHhHHHHHHHHHHhcC
Q 020779 171 CKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSN 250 (321)
Q Consensus 171 ~~~~~~~~~~~v~~~l~~~~~t~eel~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~Ra~Hv~tE~~RV~~~~~aL~~~ 250 (321)
+++++...... ....++|+.|+++|+.|+.+++++|+++
T Consensus 282 -----------------------~~~~~~~~~l~------------------~~~~~~~~~~~v~e~~r~~~~~~al~~~ 320 (419)
T 1pie_A 282 -----------------------EEFDANTDLIG------------------DETLIKRARHAVYENNRTKIAQKAFVAG 320 (419)
T ss_dssp -----------------------HHHHHTGGGTC------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred -----------------------HHHHHHHhhcC------------------cHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 23322221000 1146889999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHhhhhhhhhcCCCCHHhH-HHHHHHHh
Q 020779 251 LSEEDKLKKLGDLMNDSHHSCSVLYECRYMHDC-AFHIFLHF 291 (321)
Q Consensus 251 d~~~~~~~~lG~LMn~SH~Slr~~ye~ScpEl~-~~~~~~~~ 291 (321)
| ++.||++|++||.+++++|+++|||++ +++.+++.
T Consensus 321 d-----~~~lg~lm~~~~~~l~~~~~~~~p~l~~l~~~a~~~ 357 (419)
T 1pie_A 321 N-----LTKFGELLNASHASLKDDYEVTGLELDTLAETAQKQ 357 (419)
T ss_dssp C-----HHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHS
T ss_pred C-----HHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhc
Confidence 9 999999999999999999999999975 77888775
No 4
>1wuu_A Galactokinase; galactosemia, GHMP superfamily, transferase; HET: GLA ANP; 2.50A {Homo sapiens} SCOP: d.14.1.5 d.58.26.7
Probab=100.00 E-value=1.1e-35 Score=290.13 Aligned_cols=211 Identities=26% Similarity=0.273 Sum_probs=182.7
Q ss_pred CccEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH-hhCCCCCcccceeeeeccCCceEEe
Q 020779 12 FQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSGFAELI 90 (321)
Q Consensus 12 ~~G~~i~I~s~IP~gsGLsSSAAl~VA~~~Al~~l~g~~ls~~ela~la~~aE~-~~G~~~G~mDq~a~~~g~~g~~l~i 90 (321)
.+|+++.|.|+||+|+|||||||+++|++.|+++++|.++++++++++|+++|+ ++|.|||+|||.++++|+.++++++
T Consensus 129 ~~g~~i~i~s~IP~gaGLGSSaA~~vA~~~al~~l~~~~l~~~~l~~la~~~E~~~~G~~~G~~D~~~~~~Gg~~~~~~~ 208 (399)
T 1wuu_A 129 LPGFSAVVVSSVPLGGGLSSSASLEVATYTFLQQLCPDSGTIAARAQVCQQAEHSFAGMPCGIMDQFISLMGQKGHALLI 208 (399)
T ss_dssp CCEEEEEEEECSCTTSSSCHHHHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHHHHTCCCCCSHHHHHHHHCCTTEEEEE
T ss_pred CCCeEEEEECCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHhccCCeEEEE
Confidence 479999999999999999999999999999999999999999999999999999 9999999999999999988889999
Q ss_pred eeCCCeeEEeecCC-CceEEEEecCccchhhcccccchHHHHHHHHHHHHHHHHHhCCCchhhhcccCcchhhHhHHhhh
Q 020779 91 DFNPIRTTDVQLPA-GGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAF 169 (321)
Q Consensus 91 d~~~~~~~~i~~p~-~~~~vv~~S~v~~~k~~~a~~~Yn~Rv~Ec~~Aa~~L~~~~gi~~~~~~~~~~~Lrdv~~~~~~~ 169 (321)
|+++..++++|+|. ++.++|++|++ ++.+....||.|+.||+.|.++|++. .+|++..
T Consensus 209 ~~~~~~~~~~~~~~~~~~~vl~~~~~---~~~t~~~~y~~r~~~~~~a~~~l~~~-------------~l~~~~~----- 267 (399)
T 1wuu_A 209 DCRSLETSLVPLSDPKLAVLITNSNV---RHSLASSEYPVRRRQCEEVARALGKE-------------SLREVQL----- 267 (399)
T ss_dssp ETTTCCEEEEECCCSSEEEEEEEEEE---EC--CTTTHHHHHHHHHHHHHHTTCS-------------STTSCCH-----
T ss_pred ecCCCceEEecCCCCCeEEEEEECCC---ccccccccHHHHHHHHHHHHHHhChh-------------hhhcCCH-----
Confidence 99988899999874 89999999999 68888889999999999999988642 4555422
Q ss_pred hcCCCCCCcHHHHHHhhccCCCCHHHHHHHhhhhhhHHhhccCCchhhhhhhhhhhhhhhhhhhhhHhHHHHHHHHHHhc
Q 020779 170 ACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSS 249 (321)
Q Consensus 170 ~~~~~~~~~~~~v~~~l~~~~~t~eel~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~Ra~Hv~tE~~RV~~~~~aL~~ 249 (321)
+++.+.+... ....++|+.|+++|+.|+.+++++|++
T Consensus 268 ------------------------~~~~~~~~~l-------------------~~~~~~r~~~~~~e~~r~~~~~~al~~ 304 (399)
T 1wuu_A 268 ------------------------EELEAARDLV-------------------SKEGFRRARHVVGEIRRTAQAAAALRR 304 (399)
T ss_dssp ------------------------HHHTTGGGGS-------------------CHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ------------------------HHHHHHHhhc-------------------CHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 2222111100 114688999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHhhhhhhhhcCCCCHHhH-HHHHHHHh
Q 020779 250 NLSEEDKLKKLGDLMNDSHHSCSVLYECRYMHDC-AFHIFLHF 291 (321)
Q Consensus 250 ~d~~~~~~~~lG~LMn~SH~Slr~~ye~ScpEl~-~~~~~~~~ 291 (321)
+| ++.||++|++||.++++.|+++|||++ +++.+++.
T Consensus 305 ~d-----~~~lg~~m~~~h~~l~~~~~~~~p~l~~l~~~a~~~ 342 (399)
T 1wuu_A 305 GD-----YRAFGRLMVESHRSLRDDYEVSCPELDQLVEAALAV 342 (399)
T ss_dssp TC-----HHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHTS
T ss_pred CC-----HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhc
Confidence 99 999999999999999999999999975 77787764
No 5
>2cz9_A Probable galactokinase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.50A {Pyrococcus horikoshii} PDB: 2dei_A* 2dej_A* 1s4e_A*
Probab=100.00 E-value=3.3e-33 Score=266.34 Aligned_cols=207 Identities=18% Similarity=0.215 Sum_probs=179.7
Q ss_pred CccEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH-hhCCCCCcccceeeeeccCCceEEe
Q 020779 12 FQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSGFAELI 90 (321)
Q Consensus 12 ~~G~~i~I~s~IP~gsGLsSSAAl~VA~~~Al~~l~g~~ls~~ela~la~~aE~-~~G~~~G~mDq~a~~~g~~g~~l~i 90 (321)
.+|+++.|.++||.|+|||||||+++|++.|+++++|.++++++++++|+.+|+ ++|+|+|+|||+++++|+.++++++
T Consensus 85 ~~g~~i~i~s~IP~g~GLGSSaA~~vA~~~al~~l~~~~l~~~el~~la~~~e~~~~g~~~gi~d~~~~~~g~~~~~~~~ 164 (350)
T 2cz9_A 85 VGGIKGRVSGNLPLGAGLSSSASFEVGILETLDKLYNLKLDSLSKVLLAKKAENEFVGVPCGILDQFAVVFGREGNVIFL 164 (350)
T ss_dssp CCEEEEEEECSCCTTSSSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTTCCCCCSHHHHHHHHCCTTEEEEE
T ss_pred CCCeEEEEECCCCCCCCcchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCccchhHHHHHhcCCCeEEEE
Confidence 479999999999999999999999999999999999999999999999999998 9999999999999999998999999
Q ss_pred eeCCCeeEEeecCCCceEEEEecCccchhhcccccchHHHHHHHHHHHHHHHHHhCCCchhhhcccCcchhhHhHHhhhh
Q 020779 91 DFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFA 170 (321)
Q Consensus 91 d~~~~~~~~i~~p~~~~~vv~~S~v~~~k~~~a~~~Yn~Rv~Ec~~Aa~~L~~~~gi~~~~~~~~~~~Lrdv~~~~~~~~ 170 (321)
|+++..++++++|+++.+++++|++ ++.+.+..||.|+.+|+.|++.++.+ +||++..
T Consensus 165 d~~~~~~~~l~~~~~~~~vl~~~~~---~~~~~t~~~~~r~~~~~~a~~~~~~~-------------~lr~~~~------ 222 (350)
T 2cz9_A 165 DTHTLDYEYIPFPKDVSILVFYTGV---RRELASSEYAERKHIAEESLKILGKG-------------SSKEVRE------ 222 (350)
T ss_dssp ETTTCCEEEEECCTTEEEEEEECSC---C----CHHHHHHHHHHHHHHHHHTCS-------------CGGGCCG------
T ss_pred ecCCCcEEEEcCCCCcEEEEEECCC---CCccccchHHHHHHHHHHHHHHhChh-------------hhhhCCH------
Confidence 9998899999998899999999998 46666667999999999999988642 5676532
Q ss_pred cCCCCCCcHHHHHHhhccCCCCHHHHHHHhhhhhhHHhhccCCchhhhhhhhhhhhhhhhhhhhhHhHHHHHHHHHHhcC
Q 020779 171 CKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSN 250 (321)
Q Consensus 171 ~~~~~~~~~~~v~~~l~~~~~t~eel~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~Ra~Hv~tE~~RV~~~~~aL~~~ 250 (321)
+++ +. ++ ..+++|+.|++.|+.|+.+++++|+++
T Consensus 223 -----------------------~~~----~~-l~------------------~~~~~~~~~~~~~~~~~~~~~~al~~~ 256 (350)
T 2cz9_A 223 -----------------------GEL----SK-LP------------------PLHRKFFGYIVRENARVLEVRDALKEG 256 (350)
T ss_dssp -----------------------GGG----GG-SC------------------HHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred -----------------------HHH----hh-CC------------------HHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 111 00 01 034678899999999999999999999
Q ss_pred CCChHHHHHHHHHHHHhhhhhhhhcCCCCHHhH-HHHHHHHh
Q 020779 251 LSEEDKLKKLGDLMNDSHHSCSVLYECRYMHDC-AFHIFLHF 291 (321)
Q Consensus 251 d~~~~~~~~lG~LMn~SH~Slr~~ye~ScpEl~-~~~~~~~~ 291 (321)
| ++.||++|+++|.++++.|.++|||++ +++.+++.
T Consensus 257 d-----~~~lg~~~~~~~~~l~~~~~~~~p~l~~l~~~~~~~ 293 (350)
T 2cz9_A 257 N-----VEEVGKILTTAHWDLAKNYEVSCKELDFFVERALKL 293 (350)
T ss_dssp C-----HHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHT
T ss_pred C-----HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHc
Confidence 9 999999999999999999999999975 77777764
No 6
>3k85_A D-glycero-D-manno-heptose 1-phosphate kinase; bacteriodes thetaiotaomicron, protein structure initiative II(PSI II), nysgxrc; 2.28A {Bacteroides thetaiotaomicron}
Probab=99.95 E-value=1.7e-28 Score=236.90 Aligned_cols=182 Identities=14% Similarity=0.121 Sum_probs=135.7
Q ss_pred CccEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH-hhCCCCCcccceeeeeccCCceEEe
Q 020779 12 FQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSGFAELI 90 (321)
Q Consensus 12 ~~G~~i~I~s~IP~gsGLsSSAAl~VA~~~Al~~l~g~~ls~~ela~la~~aE~-~~G~~~G~mDq~a~~~g~~g~~l~i 90 (321)
.+||++.+.++||+|+|||||||++||++.|+++++|.++++++++++|+++|+ ++|.|||+|||+++++|+...+.+.
T Consensus 96 ~~g~~i~i~~~iP~g~GLgSSaa~~va~~~al~~~~~~~l~~~~l~~~a~~~E~~~~G~~~G~~D~~a~~~Gg~~~~~~~ 175 (357)
T 3k85_A 96 PKSFKITTYNDAPAGSGLGTSSTMVVCILKAFIEWLSLPLGDYETSRLAYEIERKDLGLSGGKQDQYAAAFGGFNYMEFL 175 (357)
T ss_dssp CCCEEEEEEESSCSSSSSCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHCSEEEEEEE
T ss_pred CCCEEEEEecCCCCCCCchHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHccCCCcHHHHHHHHhCCceEEEEe
Confidence 579999999999999999999999999999999999999999999999999999 9999999999999999876666666
Q ss_pred eeCCCeeEEeecCCC------ceEEEEecCccchhhcccccchHHHHHHHHHHHHHHHHHhCCCchhhhcccCcchhhHh
Q 020779 91 DFNPIRTTDVQLPAG------GTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEG 164 (321)
Q Consensus 91 d~~~~~~~~i~~p~~------~~~vv~~S~v~~~k~~~a~~~Yn~Rv~Ec~~Aa~~L~~~~gi~~~~~~~~~~~Lrdv~~ 164 (321)
|+++..++++++|++ +.++|++|+.+ +.+ .+++.+.. ..+
T Consensus 176 ~~~~~~~~~l~~~~~~~~~l~~~lvi~~t~~~---~~a---------------~~~l~~~~-----------~~~----- 221 (357)
T 3k85_A 176 QNDLVIVNPLKMKRWIVDELESSMVLYFTGRS---RSS---------------AAIINEQK-----------KNT----- 221 (357)
T ss_dssp TTTEEEEEEECCCHHHHHHHHHTEEEECC---------------------------------------------------
T ss_pred CCCceeEEEEecChhhhhhcCceEEEEECCCc---ccH---------------HHHHHHHH-----------HHh-----
Confidence 777777888888753 68999999984 432 12222110 000
Q ss_pred HHhhhhcCCCCCCcHHHHHHhhccCCCCHHHHHHHhhhhhhHHhhccCCchhhhhhhhhhhhhhhhhhhhhHhHHHHHHH
Q 020779 165 LCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFK 244 (321)
Q Consensus 165 ~~~~~~~~~~~~~~~~~v~~~l~~~~~t~eel~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~Ra~Hv~tE~~RV~~~~ 244 (321)
++ .+ ..++|+.|.++| ||.+++
T Consensus 222 -----------------------------~~--------~~-------------------~~~~~~~~~i~~--~~~~~~ 243 (357)
T 3k85_A 222 -----------------------------SE--------GN-------------------QTAIEAMHKIKQ--SAIDTK 243 (357)
T ss_dssp ------------------------------------------------------------CCTTHHHHHHHH--HHHHHH
T ss_pred -----------------------------hc--------Cc-------------------HHHHHHHHHHHH--HHHHHH
Confidence 00 00 235688999987 899999
Q ss_pred HHHhcCCCChHHHHHHHHHHHHhhhhhhhh-cCCCCHHhH-HHHHHHH
Q 020779 245 DTVSSNLSEEDKLKKLGDLMNDSHHSCSVL-YECRYMHDC-AFHIFLH 290 (321)
Q Consensus 245 ~aL~~~d~~~~~~~~lG~LMn~SH~Slr~~-ye~ScpEl~-~~~~~~~ 290 (321)
++|+++| ++.||++|+++|.+++++ |++||||++ +++++++
T Consensus 244 ~aL~~~d-----~~~lg~lm~~~~~~l~~~~~~vs~p~ld~l~~~a~~ 286 (357)
T 3k85_A 244 LALLKGD-----VGEFARILGEGWENKKKMAGAITNPMIQEAFDVATG 286 (357)
T ss_dssp HHHTTTC-----HHHHHHHHHHHHHHTTC-----------CCSCTTTT
T ss_pred HHHHcCC-----HHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHh
Confidence 9999999 999999999999999998 999999986 5566654
No 7
>1kvk_A MK, mevalonate kinase; RMK, ATP, GHMP, transferase; HET: ATP; 2.40A {Rattus norvegicus} SCOP: d.14.1.5 d.58.26.3 PDB: 2r42_A* 2r3v_A
Probab=99.92 E-value=8.4e-25 Score=212.77 Aligned_cols=182 Identities=16% Similarity=0.101 Sum_probs=143.8
Q ss_pred CccEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCC-----CCC-------H---HHHHHHHHHHHH-hhCCCCCccc
Q 020779 12 FQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGV-----EVP-------K---KEIAQLTCECEQ-FIGTQSGGMD 75 (321)
Q Consensus 12 ~~G~~i~I~s~IP~gsGLsSSAAl~VA~~~Al~~l~g~-----~ls-------~---~ela~la~~aE~-~~G~~~G~mD 75 (321)
.+|+++.|.|+||.|+|||||||++||++.|+++++|. +++ + .+++++|+.+|+ ++|.|||+ |
T Consensus 126 ~~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~l~~~~~~~~~l~~~~~~~~~~~l~~l~~~A~~~E~~~~G~~sG~-D 204 (395)
T 1kvk_A 126 LPSLDIMVWSELPPGAGLGSSAAYSVCVAAALLTACEEVTNPLKDRGSIGSWPEEDLKSINKWAYEGERVIHGNPSGV-D 204 (395)
T ss_dssp CCCEEEEEEESSCTTSSSCHHHHHHHHHHHHHHHHTTSSCCGGGGCCSEECCCHHHHHHHHHHHHHHHHHHHSSCCSH-H
T ss_pred CCCEEEEEEecCCCCCCccHHHHHHHHHHHHHHHHhCcccccccccccccccchhhHHHHHHHHHHhhheEecCCCCc-c
Confidence 57999999999999999999999999999999999999 788 8 455566888999 99999998 9
Q ss_pred ceeeeeccCCceEEeeeCCCeeEEeecCCCceEEEEecCccchhhcccccchHHHHHHHHHHHHHHHHHhCCCchhhhcc
Q 020779 76 QAISIMAKSGFAELIDFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISK 155 (321)
Q Consensus 76 q~a~~~g~~g~~l~id~~~~~~~~i~~p~~~~~vv~~S~v~~~k~~~a~~~Yn~Rv~Ec~~Aa~~L~~~~gi~~~~~~~~ 155 (321)
|.++++| +++++ ++..++++++|+++.+++++|++ ++.+.. + +.
T Consensus 205 ~~~~~~G---g~~~~--~~~~~~~l~~~~~~~~vl~~~~~---~~~T~~---------~------~~------------- 248 (395)
T 1kvk_A 205 NSVSTWG---GALRY--QQGKMSSLKRLPALQILLTNTKV---PRSTKA---------L------VA------------- 248 (395)
T ss_dssp HHHHHHC---SEEEE--SSSCEEECSCCCCEEEEEEECCC---CCCHHH---------H------HH-------------
T ss_pred hHHhhhc---ceEEE--cCCCceeccCCCCcEEEEEECCC---CCchHH---------H------HH-------------
Confidence 9999996 55554 45678888877789999999998 455421 1 11
Q ss_pred cCcchhhHhHHhhhhcCCCCCCcHHHHHHhhccCCCCHHHHHHHhhhhhhHHhhccCCchhhhhhhhhhhhhhhhhhhhh
Q 020779 156 VKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYS 235 (321)
Q Consensus 156 ~~~Lrdv~~~~~~~~~~~~~~~~~~~v~~~l~~~~~t~eel~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~Ra~Hv~t 235 (321)
.+|+..+.. .+.+ + ..++|+.|++.
T Consensus 249 --~~~~~~~~~--------------------------~~~~--------~-------------------~~~~~~~~~~~ 273 (395)
T 1kvk_A 249 --GVRSRLIKF--------------------------PEIM--------A-------------------PLLTSIDAISL 273 (395)
T ss_dssp --HHHHHHHHS--------------------------HHHH--------H-------------------HHHHHHHHHHH
T ss_pred --HHHHHHHHC--------------------------HHHH--------H-------------------HHHHHHHHHHH
Confidence 011110000 0000 0 35679999999
Q ss_pred HhHHHHHH-HHHHhcCCCChHHHHHHHHHHHHhhhhhhhhcCCCCHHhH-HHHHHHHh
Q 020779 236 EAKRVHAF-KDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECRYMHDC-AFHIFLHF 291 (321)
Q Consensus 236 E~~RV~~~-~~aL~~~d~~~~~~~~lG~LMn~SH~Slr~~ye~ScpEl~-~~~~~~~~ 291 (321)
|+.|+.++ .++|+++| ++.||++|++||.++++ |++||||++ +++.+++.
T Consensus 274 ~~~~~l~~~~~al~~~d-----~~~lg~lm~~~~~~l~~-~~~~~p~l~~l~~~a~~~ 325 (395)
T 1kvk_A 274 ECERVLGEMAAAPVPEQ-----YLVLEELMDMNQHHLNA-LGVGHASLDQLCQVTAAH 325 (395)
T ss_dssp HHHHHHHHHTTCCCHHH-----HHHHHHHHHHHHHHHHH-HTCCCHHHHHHHHHHHHT
T ss_pred HHHHHHHhhhccccHHH-----HHHHHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHc
Confidence 99999988 68888887 99999999999999997 999999975 77787775
No 8
>3gon_A Phosphomevalonate kinase; GHMP kinase superfamily, ATP-binding, nucleotide- binding, transferase; HET: PMV ANP; 1.90A {Streptococcus pneumoniae} PDB: 1k47_A
Probab=99.91 E-value=2.9e-24 Score=202.29 Aligned_cols=174 Identities=13% Similarity=0.020 Sum_probs=135.0
Q ss_pred cCccEEEEEEeCCCCC---CCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH-hhCCCCCcccceeeeeccCCc
Q 020779 11 KFQLFNHINSLFFNLG---SGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSGF 86 (321)
Q Consensus 11 ~~~G~~i~I~s~IP~g---sGLsSSAAl~VA~~~Al~~l~g~~ls~~ela~la~~aE~-~~G~~~G~mDq~a~~~g~~g~ 86 (321)
+++|+++.|.|++|.+ +|||||||++||++.|++++++.++++++++++|+.+|+ +.|.++| |||+++++|+
T Consensus 83 ~~~~~~i~I~s~lp~~~~~~GLgSSaa~~va~~~al~~~~~~~~~~~~l~~la~~~E~~~~g~~sg-~D~a~a~~Gg--- 158 (335)
T 3gon_A 83 NLRPFSLAIYGKMEREGKKFGLGSSGSVVVLVVKALLALYNLSVDQNLLFKLTSAVLLKRGDNGSM-GDLACIAAED--- 158 (335)
T ss_dssp CCCCEEEEEECCSEETTEECSSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTTCCSCS-HHHHHHHHTS---
T ss_pred CCCceEEEEEecCCcccCCCCcchHHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHhcCCCCC-CCcceeecCC---
Confidence 5689999999999987 599999999999999999999999999999999999999 7788777 9999999973
Q ss_pred eEEeeeC----------------------CCeeEEeecCCCceEEEEecCccchhhcccccchHHHHHHHHHHHHHHHHH
Q 020779 87 AELIDFN----------------------PIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIK 144 (321)
Q Consensus 87 ~l~id~~----------------------~~~~~~i~~p~~~~~vv~~S~v~~~k~~~a~~~Yn~Rv~Ec~~Aa~~L~~~ 144 (321)
++++... ....++++.|.++.+++++++.+ ..+. +.+...
T Consensus 159 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~t~---------------~~v~~v 220 (335)
T 3gon_A 159 LVLYQSFDRQKVAAWLEEENLATVLERDWGFSISQVKPTLECDFLVGWTKEV---AVSS---------------HMVQQI 220 (335)
T ss_dssp CEEEECCCHHHHHHHHHHSCHHHHHHSCCCCEEEECCCCSCCEEEEEECCCC---CCHH---------------HHHHHH
T ss_pred eEEEEeCCccccceeecccchhheecccccceeEEcCCccccceEEeecCCh---hhHH---------------HHHHHH
Confidence 4444332 13456666677889999999873 3221 111110
Q ss_pred hCCCchhhhcccCcchhhHhHHhhhhcCCCCCCcHHHHHHhhccCCCCHHHHHHHhhhhhhHHhhccCCchhhhhhhhhh
Q 020779 145 LGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQY 224 (321)
Q Consensus 145 ~gi~~~~~~~~~~~Lrdv~~~~~~~~~~~~~~~~~~~v~~~l~~~~~t~eel~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 224 (321)
..
T Consensus 221 ------------------~~------------------------------------------------------------ 222 (335)
T 3gon_A 221 ------------------KQ------------------------------------------------------------ 222 (335)
T ss_dssp ------------------GG------------------------------------------------------------
T ss_pred ------------------HH------------------------------------------------------------
Confidence 00
Q ss_pred hhhhhhhhhhhHhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhhh-hcCCCCHHhH-HHHHHHHh
Q 020779 225 KLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSV-LYECRYMHDC-AFHIFLHF 291 (321)
Q Consensus 225 ~l~~Ra~Hv~tE~~RV~~~~~aL~~~d~~~~~~~~lG~LMn~SH~Slr~-~ye~ScpEl~-~~~~~~~~ 291 (321)
+....++...+.||.++.++|+++| ++.||+||++||.++++ .+++||||+| +++++++.
T Consensus 223 --~~~~~~~~~~~~~~~~~~~aL~~~d-----~~~lg~lm~~~h~~l~~l~~~is~p~ld~l~~~a~~~ 284 (335)
T 3gon_A 223 --NINQNFLTSSKETVVSLVEALEQGK-----SEKIIEQVEVASKLLEGLSTDIYTPLLRQLKEASQDL 284 (335)
T ss_dssp --GCCHHHHHHHHHHHHHHHHHHHHTC-----HHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTTTTS
T ss_pred --HhHHHHHHHHHHHHHHHHHHHHhCc-----HHHHHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHhC
Confidence 0001133344678899999999999 99999999999999999 5699999975 67777654
No 9
>3k17_A LIN0012 protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics, NEW YORK SGX research center for structural genomics; HET: PGE; 2.10A {Listeria innocua}
Probab=99.90 E-value=4.3e-23 Score=199.71 Aligned_cols=177 Identities=12% Similarity=0.027 Sum_probs=139.6
Q ss_pred cCccEEEEEEeCCCC----CCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH-hhCCCCCcccceeeeeccCC
Q 020779 11 KFQLFNHINSLFFNL----GSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSG 85 (321)
Q Consensus 11 ~~~G~~i~I~s~IP~----gsGLsSSAAl~VA~~~Al~~l~g~~ls~~ela~la~~aE~-~~G~~~G~mDq~a~~~g~~g 85 (321)
+.+||++.|.|+||. ++|||||||++||++.|++++++.++++++++++|+.+|+ +.| ++|+|||+++++|
T Consensus 95 ~~~g~~i~i~s~iP~~~g~~~GLgSSaa~~va~~~al~~~~~~~l~~~~l~~~a~~~E~~~~g-~~~g~D~~~~~~G--- 170 (365)
T 3k17_A 95 ELTPVKMVIETELIDQSGAKYGLGSSAAATVAVINALMTKFYPEISMLKKFKLAALSHLVVQG-NGSCGDIASCMYG--- 170 (365)
T ss_dssp CCCCEEEEEEESSBCTTSCBCSSCHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHS-SCCSHHHHHHHHC---
T ss_pred CCCCEEEEEEcCCCCCCCCCCcccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCC-CCCcccHHHHhcC---
Confidence 357999999999996 5699999999999999999999999999999999999999 889 6677999999997
Q ss_pred ceEEee-eC----------------------CCeeEEeecCCCceEEEEecCccchhhcccccchHHHHHHHHHHHHHHH
Q 020779 86 FAELID-FN----------------------PIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLA 142 (321)
Q Consensus 86 ~~l~id-~~----------------------~~~~~~i~~p~~~~~vv~~S~v~~~k~~~a~~~Yn~Rv~Ec~~Aa~~L~ 142 (321)
+++++. +. ...++++++|++ .+++++|+++ +.+. .+.+.+.
T Consensus 171 g~~~~~~~~~~~~~~~~~~~~l~~l~~~~w~~~~~~~l~~~~~-~lll~~t~~~---~sT~------------~~~~~v~ 234 (365)
T 3k17_A 171 GWIAYTTFDQEWVKHRLAYKSLEWFMKEPWPMLQIETLEEPVP-TFSVGWTGTP---VSTG------------KLVSQIH 234 (365)
T ss_dssp SEEEEECCCHHHHHHHHTTSCHHHHHHSCCTTCEEEEECCCSS-EEEEEECSCC---CCHH------------HHHHHHH
T ss_pred CEEEEecCCHHHhhhhcccchhhhhhccCCCCcceeeccCCcc-cEEEEECCCc---cchH------------HHHHHHH
Confidence 344443 21 357788888888 9999999994 5431 1111111
Q ss_pred HHhCCCchhhhcccCcchhhHhHHhhhhcCCCCCCcHHHHHHhhccCCCCHHHHHHHhhhhhhHHhhccCCchhhhhhhh
Q 020779 143 IKLGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAK 222 (321)
Q Consensus 143 ~~~gi~~~~~~~~~~~Lrdv~~~~~~~~~~~~~~~~~~~v~~~l~~~~~t~eel~~~~~~~~~~~~~~~~~~~~v~~~~~ 222 (321)
+ +++.
T Consensus 235 ~---------------~~~~------------------------------------------------------------ 239 (365)
T 3k17_A 235 A---------------FKQE------------------------------------------------------------ 239 (365)
T ss_dssp H---------------HHHH------------------------------------------------------------
T ss_pred H---------------HHHh------------------------------------------------------------
Confidence 0 0000
Q ss_pred hhhhhhhhhhhhhHh-HHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhhhhcCC------CCHHhH-HHHHHHHh
Q 020779 223 QYKLHQRAAHVYSEA-KRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYEC------RYMHDC-AFHIFLHF 291 (321)
Q Consensus 223 ~~~l~~Ra~Hv~tE~-~RV~~~~~aL~~~d~~~~~~~~lG~LMn~SH~Slr~~ye~------ScpEl~-~~~~~~~~ 291 (321)
.-++.+|+++|. .+|.+++++|+++| ++.||++|+++|.++++ |++ ||||++ +++.+++.
T Consensus 240 ---~~~~~~~~~~~~~~~~~~~~~aL~~gd-----~~~lg~lm~~~~~~l~~-l~v~~~~~is~p~ld~l~~~a~~~ 307 (365)
T 3k17_A 240 ---DSKNYQHFLTRNNEIMKQIIQAFHTKD-----EELLYSSIKENRRILQE-LGTKAGVNIETSLLKELADSAENM 307 (365)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHTC-----HHHHHHHHHHHHHHHHH-HHHHHTCCCSCHHHHHHHHHHHHT
T ss_pred ---ChHHHHHHHHHHHHHHHHHHHHHHhCC-----HHHHHHHHHHHHHHHHH-hhhhcCCcccCHHHHHHHHHHHhc
Confidence 001246788885 57899999999999 99999999999999998 776 999975 67777764
No 10
>2pg9_A Phosphomevalonate kinase; GHMP kinase superfamily, transferase; HET: PMV ANP; 1.90A {Streptococcus pneumoniae} PDB: 1k47_A* 3gon_A*
Probab=99.88 E-value=4.6e-22 Score=190.36 Aligned_cols=174 Identities=14% Similarity=0.056 Sum_probs=137.7
Q ss_pred cCccEEEEEEeCCCCC---CCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhCCCCCcccceeeeeccCCce
Q 020779 11 KFQLFNHINSLFFNLG---SGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFA 87 (321)
Q Consensus 11 ~~~G~~i~I~s~IP~g---sGLsSSAAl~VA~~~Al~~l~g~~ls~~ela~la~~aE~~~G~~~G~mDq~a~~~g~~g~~ 87 (321)
+.+||++.|.|+||.| +|||||||++||++.|+++++|.++++++++++|+.+|.++|.++|++||+++++|+ +
T Consensus 85 ~~~g~~i~i~s~iP~~g~k~GLgSSaa~~va~~~al~~~~~~~l~~~~l~~la~~~E~~~~~~~~~~D~~~~~~Gg---~ 161 (337)
T 2pg9_A 85 NLRPFSLAIYGKMEREGKKFGLGSSGSVVVLVVKALLALYNLSVDQNLLFKLTSAVLLKRGDNGSMGDLACIAAED---L 161 (337)
T ss_dssp CCCCEEEEEECCSEETTEECSSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTTCCSCSHHHHHHHHTS---C
T ss_pred CCCCEEEEEEccCCCCCCCccccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhCC---E
Confidence 4579999999999999 999999999999999999999999999999999999999889999999999999973 3
Q ss_pred EEe---eeC-------------------CCeeEEeecCCCceEEEEecCccchhhcccccchHHHHHHHHHHHHHHHHHh
Q 020779 88 ELI---DFN-------------------PIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKL 145 (321)
Q Consensus 88 l~i---d~~-------------------~~~~~~i~~p~~~~~vv~~S~v~~~k~~~a~~~Yn~Rv~Ec~~Aa~~L~~~~ 145 (321)
+++ |.. +..++++++|.++.+++++|+++ +.+. .+.+.+.+.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~lvl~~~~~~---~~T~------------~~~~~~~~~- 225 (337)
T 2pg9_A 162 VLYQSFDRQKVAAWLEEENLATVLERDWGFSISQVKPTLECDFLVGWTKEV---AVSS------------HMVQQIKQN- 225 (337)
T ss_dssp EEEECCCHHHHHHHHHHSCHHHHHHSCCCCEEEECCCCSCCEEEEEECCCC---CCHH------------HHHHHHGGG-
T ss_pred EEEecCChHHhhhhhcccchhhhcccccccceeeecCCCCceEEEEECCCc---cchH------------HHHHHHHHH-
Confidence 333 332 24678888888999999999984 4431 111111110
Q ss_pred CCCchhhhcccCcchhhHhHHhhhhcCCCCCCcHHHHHHhhccCCCCHHHHHHHhhhhhhHHhhccCCchhhhhhhhhhh
Q 020779 146 GMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYK 225 (321)
Q Consensus 146 gi~~~~~~~~~~~Lrdv~~~~~~~~~~~~~~~~~~~v~~~l~~~~~t~eel~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 225 (321)
+ . +
T Consensus 226 --------------~-------------------------------~-~------------------------------- 228 (337)
T 2pg9_A 226 --------------I-------------------------------N-Q------------------------------- 228 (337)
T ss_dssp --------------C-------------------------------C-H-------------------------------
T ss_pred --------------H-------------------------------H-H-------------------------------
Confidence 0 0 0
Q ss_pred hhhhhhhhhh-HhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhhhhc-CCCCHHhH-HHHHHHHh
Q 020779 226 LHQRAAHVYS-EAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLY-ECRYMHDC-AFHIFLHF 291 (321)
Q Consensus 226 l~~Ra~Hv~t-E~~RV~~~~~aL~~~d~~~~~~~~lG~LMn~SH~Slr~~y-e~ScpEl~-~~~~~~~~ 291 (321)
+.+. -+.++.+++++|+++| ++.||++|+++|.++++.+ +++|||++ +++.+++.
T Consensus 229 ------~~~~~~~~~~~~~~~aL~~~d-----~~~lg~~m~~~~~~l~~l~~~v~~p~l~~l~~~a~~~ 286 (337)
T 2pg9_A 229 ------NFLTSSKETVVSLVEALEQGK-----SEKIIEQVEVASKLLEGLSTDIYTPLLRQLKEASQDL 286 (337)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHTC-----HHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTTTTS
T ss_pred ------HHHHHHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHHHHHhcCcCCCHHHHHHHHHHHHC
Confidence 0011 1567789999999999 9999999999999999887 49999975 66666654
No 11
>2x7i_A Mevalonate kinase; transferase; HET: CIT; 2.20A {Staphylococcus aureus}
Probab=99.88 E-value=2.8e-22 Score=187.94 Aligned_cols=177 Identities=18% Similarity=0.131 Sum_probs=135.7
Q ss_pred cccCccEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH-hhCCCCCcccceeeeeccCCce
Q 020779 9 ITKFQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSGFA 87 (321)
Q Consensus 9 ~~~~~G~~i~I~s~IP~gsGLsSSAAl~VA~~~Al~~l~g~~ls~~ela~la~~aE~-~~G~~~G~mDq~a~~~g~~g~~ 87 (321)
.+..+|+++.+.++||+|+|||||||+++|++.|+++++|.++++++++++|+++|+ ++|.|||. |+.++.+| ++
T Consensus 81 ~~~~~g~~i~i~~~iP~g~GLGSSsa~~~a~~~al~~l~~~~l~~~~l~~la~~~E~~~~g~~sG~-d~~~~~~g---~~ 156 (308)
T 2x7i_A 81 NNITEPLAVTIQTNLPPSRGLGSSAAVAVAFVRASYDFLGKSLTKEELIEKANWAEQIAHGKPSGI-DTQTIVSG---KP 156 (308)
T ss_dssp TTCCSCEEEEEEECCCTTSSSCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHSSCCHH-HHHHHHHT---SC
T ss_pred HhhCCCeEEEEeccCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHCCCCchH-HHHHhhCC---ce
Confidence 334569999999999999999999999999999999999999999999999999998 99999995 88877764 56
Q ss_pred EEeeeCCCeeEEeecCCCceEEEEecCccchhhcccccchHHHHHHHHHHHHHHHHHhCCCchhhhcccCcchhhHhHHh
Q 020779 88 ELIDFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCV 167 (321)
Q Consensus 88 l~id~~~~~~~~i~~p~~~~~vv~~S~v~~~k~~~a~~~Yn~Rv~Ec~~Aa~~L~~~~gi~~~~~~~~~~~Lrdv~~~~~ 167 (321)
+++| +...++++|+|.++.++|+++++ ++.+.. .|+ .|++..+
T Consensus 157 ~~~~-~g~~~~~~~~~~~~~~vi~~~~~---~~sT~~-~~~-----------------------------~l~~~~~--- 199 (308)
T 2x7i_A 157 VWFQ-KGHAETLKTLSLDGYMVVIDTGV---KGSTRQ-AVH-----------------------------DVHKLCE--- 199 (308)
T ss_dssp EEEE-TTEEEECSCCCBSSEEEEEECCC-----CCSC-CCC---------------------------------------
T ss_pred EEEE-cCCCceEeccCCCceEEEEECcC---CCCHHH-HHH-----------------------------HHHHHHh---
Confidence 7777 44567777777789999999998 444421 110 1111000
Q ss_pred hhhcCCCCCCcHHHHHHhhccCCCCHHHHHHHhhhhhhHHhhccCCchhhhhhhhhhhhhhhhhhhhhHhHHHHHHHHHH
Q 020779 168 AFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTV 247 (321)
Q Consensus 168 ~~~~~~~~~~~~~~v~~~l~~~~~t~eel~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~Ra~Hv~tE~~RV~~~~~aL 247 (321)
. . + ..++ ..|+ ..++.+++++|
T Consensus 200 ---------------------------~-------~-~-------------------~~~~-~~~~---~~~~~~~~~al 221 (308)
T 2x7i_A 200 ---------------------------D-------P-Q-------------------YMSH-VKHI---GKLVLRASDVI 221 (308)
T ss_dssp -----------------------------------C-C-------------------HHHH-HHHH---HHHHHHHHHHH
T ss_pred ---------------------------c-------C-c-------------------hHHH-HHHH---HHHHHHHHHHH
Confidence 0 0 0 0111 2232 34788999999
Q ss_pred hcCCCChHHHHHHHHHHHHhhhhhhhhcCCCCHHhH-HHHHHHH
Q 020779 248 SSNLSEEDKLKKLGDLMNDSHHSCSVLYECRYMHDC-AFHIFLH 290 (321)
Q Consensus 248 ~~~d~~~~~~~~lG~LMn~SH~Slr~~ye~ScpEl~-~~~~~~~ 290 (321)
+++| ++.||++||++|.++++ |+++|||++ +++.+++
T Consensus 222 ~~~d-----~~~l~~~~~~~~~~~~~-~~~~~p~l~~l~~~~~~ 259 (308)
T 2x7i_A 222 EHHK-----FEALADIFNECHADLKA-LTVSHDKIEQLMKIGKE 259 (308)
T ss_dssp HTTC-----HHHHHHHHHHHHHHHHH-HSCCCHHHHHHHHHHHH
T ss_pred HcCC-----HHHHHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHH
Confidence 9999 99999999999999999 799999975 6677776
No 12
>2hfs_A Mevalonate kinase, putative; GHMP kinase, trypanosomatid parasite, transferase; 1.75A {Leishmania major} PDB: 2hfu_A*
Probab=99.86 E-value=1.2e-20 Score=178.48 Aligned_cols=176 Identities=18% Similarity=0.169 Sum_probs=134.8
Q ss_pred ccEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH-hhCCCCCcccceeeeeccCCceEEee
Q 020779 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSGFAELID 91 (321)
Q Consensus 13 ~G~~i~I~s~IP~gsGLsSSAAl~VA~~~Al~~l~g~~ls~~ela~la~~aE~-~~G~~~G~mDq~a~~~g~~g~~l~id 91 (321)
+|+++.+.++||.|+|||||||+.+|++.|+++++|.++++++++++|+++|+ ++|.|+|. |+.++++| ++++++
T Consensus 96 ~g~~i~i~~~iP~g~GLGSSsA~~~a~~~al~~l~~~~l~~~~l~~~a~~~E~~~~G~~~G~-D~~~~~~G---g~~~~~ 171 (332)
T 2hfs_A 96 DGLKMFIGGPLVPSSGIGASASDVVAFSRALSELYQLNLTDEEVNLSAFVGEGGYHGTPSGA-DNTAATYG---GLILYR 171 (332)
T ss_dssp SEEEEEEECSCCCCTTSCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHGGGSSSCCCSH-HHHHHHHC---EEEEEE
T ss_pred CceEEEEEcCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCcH-hHHHHhcC---CeEEEe
Confidence 69999999999999999999999999999999999999999999999999998 99999997 99998886 455555
Q ss_pred eCCC--eeEEeecCCCceEEEEecCccchhhcccccchHHHHHHHHHHHHHHHHHhCCCchhhhcccCcchhhHhHHhhh
Q 020779 92 FNPI--RTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAF 169 (321)
Q Consensus 92 ~~~~--~~~~i~~p~~~~~vv~~S~v~~~k~~~a~~~Yn~Rv~Ec~~Aa~~L~~~~gi~~~~~~~~~~~Lrdv~~~~~~~ 169 (321)
.... .++++++|+++.++++++++ ++.+. +++.+. ..+++...
T Consensus 172 ~~~g~~~~~~~~~~~~~~~vl~~~~~---~~~T~---------------~~~~~~------------~~~~~~~~----- 216 (332)
T 2hfs_A 172 RQNGKSVFKPIAFQQRLYLVVVGTGI---NASTA---------------KVVNDV------------HKMKQQQP----- 216 (332)
T ss_dssp ECSSSEEEEEECCCSCEEEEEEECSC---CCCHH---------------HHHHHH------------HHHHHHCH-----
T ss_pred cCCCCcceeeecCCCCcEEEEEECCC---CccHH---------------HHHHHH------------HHHHHhCH-----
Confidence 4332 57888888889999999998 35442 111110 01111100
Q ss_pred hcCCCCCCcHHHHHHhhccCCCCHHHHHHHhhhhhhHHhhccCCchhhhhhhhhhhhhhhhhhhhhHhHHHHHHHHHHhc
Q 020779 170 ACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSS 249 (321)
Q Consensus 170 ~~~~~~~~~~~~v~~~l~~~~~t~eel~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~Ra~Hv~tE~~RV~~~~~aL~~ 249 (321)
+.+. ..++++.| ++.++.++|++
T Consensus 217 ------------------------~~~~---------------------------~~~~~~~~------~~~~~~~al~~ 239 (332)
T 2hfs_A 217 ------------------------VQFK---------------------------RLYDNYTH------IVSQAREALQK 239 (332)
T ss_dssp ------------------------HHHH---------------------------HHHHHHHH------HHHHHHHHHHH
T ss_pred ------------------------HHHH---------------------------HHHHHHHH------HHHHHHHHHHc
Confidence 0100 12333333 34578889999
Q ss_pred CCCChHHHHHHHHHHHHhhhhhhhhcCCCCHHh-HHHHHHHH
Q 020779 250 NLSEEDKLKKLGDLMNDSHHSCSVLYECRYMHD-CAFHIFLH 290 (321)
Q Consensus 250 ~d~~~~~~~~lG~LMn~SH~Slr~~ye~ScpEl-~~~~~~~~ 290 (321)
+| ++.||++|+++|..+++ |.++|||+ ++++.+++
T Consensus 240 ~d-----~~~l~~~~~~~~~~l~~-~~~~~p~l~~l~~~~~~ 275 (332)
T 2hfs_A 240 GD-----LQRLGQLMNANHDLCRQ-IDVSCRELESIVQTCRT 275 (332)
T ss_dssp TC-----HHHHHHHHHHHHHHHHH-TTCCCHHHHHHHHHHHH
T ss_pred CC-----HHHHHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHH
Confidence 99 99999999999999987 68999997 46777766
No 13
>2oi2_A Mevalonate kinase; enzyme-inhibitor complex, transferase; HET: DP6; 2.50A {Streptococcus pneumoniae}
Probab=99.85 E-value=1.9e-20 Score=173.55 Aligned_cols=173 Identities=14% Similarity=0.090 Sum_probs=127.9
Q ss_pred CccEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH-hhCCCCCcccceeeeeccCCceEEe
Q 020779 12 FQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSGFAELI 90 (321)
Q Consensus 12 ~~G~~i~I~s~IP~gsGLsSSAAl~VA~~~Al~~l~g~~ls~~ela~la~~aE~-~~G~~~G~mDq~a~~~g~~g~~l~i 90 (321)
.+|+++.|.++||.|+|||||||..+|++.|+++++|.++++++++++|+++|+ ++|.|||+ ||+++++| +++++
T Consensus 72 ~~g~~i~i~~~iP~g~GLGSSsa~~~a~~~al~~~~~~~l~~~~l~~la~~~E~~~~~~p~g~-d~~~~~~g---g~~~~ 147 (292)
T 2oi2_A 72 EACIRCEIDSAIPEKRGMGSSAAISIAAIRAVFDYYQADLPHDVLEILVNRAEMIAHMNPSGL-DAKTCLSD---QPIRF 147 (292)
T ss_dssp CCCEEEEEC----CCGGGSCHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHTTCCCCSH-HHHHHTCS---SCEEE
T ss_pred CCceEEEEEecCCCCCCchHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCch-hHHHHhcC---ceEEE
Confidence 469999999999999999999999999999999999999999999999999998 89999995 99999986 34554
Q ss_pred eeCCCeeEEeecCCCceEEEEecCccchhhcccccchHHHHHHHHHHHHHHHHHhCCCchhhhcccCcchhhHhHHhhhh
Q 020779 91 DFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFA 170 (321)
Q Consensus 91 d~~~~~~~~i~~p~~~~~vv~~S~v~~~k~~~a~~~Yn~Rv~Ec~~Aa~~L~~~~gi~~~~~~~~~~~Lrdv~~~~~~~~ 170 (321)
++...+++++++....++++++++ ++++.. .| +.+.+. .+
T Consensus 148 -~~~~~~~~~~~~~~~~~~i~~~~~---~~sT~~-~~-----------~~l~~~------------------~~------ 187 (292)
T 2oi2_A 148 -IKNVGFTELEMDLSAYLVIADTGV---YGHTRE-AI-----------QVVQNK------------------GK------ 187 (292)
T ss_dssp -ETTTEEEECCCCCSCEEEEEECSS---CCCHHH-HH-----------HHHHHT------------------GG------
T ss_pred -EcCCCceeecCCCCCEEEEEECCC---CCcHHH-HH-----------HHHHHH------------------Hh------
Confidence 444556777665333489999988 344421 11 111110 00
Q ss_pred cCCCCCCcHHHHHHhhccCCCCHHHHHHHhhhhhhHHhhccCCchhhhhhhhhhhhhhhhhhhhhHhHHHHHHHHHHhcC
Q 020779 171 CKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSN 250 (321)
Q Consensus 171 ~~~~~~~~~~~v~~~l~~~~~t~eel~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~Ra~Hv~tE~~RV~~~~~aL~~~ 250 (321)
..+++.|.+.| .+.++.++|+++
T Consensus 188 -------------------------------------------------------~~~~~~~~~~~--~~~~~~~al~~~ 210 (292)
T 2oi2_A 188 -------------------------------------------------------DALPFLHALGE--LTQQAEIAISQK 210 (292)
T ss_dssp -------------------------------------------------------GGHHHHHHHHH--HHHHHHHHHHTT
T ss_pred -------------------------------------------------------hhHHHHHHHHH--HHHHHHHHHHcC
Confidence 00122333333 356788999999
Q ss_pred CCChHHHHHHHHHHHHhhhhhhhhcCCCCHHhH-HHHHHHHh
Q 020779 251 LSEEDKLKKLGDLMNDSHHSCSVLYECRYMHDC-AFHIFLHF 291 (321)
Q Consensus 251 d~~~~~~~~lG~LMn~SH~Slr~~ye~ScpEl~-~~~~~~~~ 291 (321)
| ++.||++|+++|.++++ +.++|||++ +++.+++.
T Consensus 211 d-----~~~l~~~~~~~~~~l~~-~~~~~p~l~~l~~~~~~~ 246 (292)
T 2oi2_A 211 D-----AEGLGQILSQAHLHLKE-IGVSSLEADSLVETALSH 246 (292)
T ss_dssp C-----HHHHHHHHHHHHHHHHH-TTCCCHHHHHHHHHHHTT
T ss_pred C-----HHHHHHHHHHHHHHHHh-cCCCcHHHHHHHHHHHhC
Confidence 9 99999999999999998 799999975 77777763
No 14
>4hac_A Mevalonate kinase; GHMP, ATP binding, phosphorylation, transferase; 1.92A {Methanosarcina mazei}
Probab=99.84 E-value=9.5e-20 Score=173.06 Aligned_cols=97 Identities=25% Similarity=0.205 Sum_probs=84.0
Q ss_pred cCccEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH-hhCCCCCcccceeeeeccCCceEE
Q 020779 11 KFQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSGFAEL 89 (321)
Q Consensus 11 ~~~G~~i~I~s~IP~gsGLsSSAAl~VA~~~Al~~l~g~~ls~~ela~la~~aE~-~~G~~~G~mDq~a~~~g~~g~~l~ 89 (321)
..+|+++.|.++||+|+|||||||+++|++.|+++++|.++++++++++|+++|+ ++|. +|++||+++++| ++++
T Consensus 94 ~~~g~~i~i~~~iP~g~GLGSSsa~~va~~~al~~l~~~~l~~~~l~~la~~~e~~~~g~-~~~~D~~~~~~G---g~~~ 169 (321)
T 4hac_A 94 PINGVFLTVDSDIPVGSGLGSSAAVTIASIGALNELFGFGLSLQEIAKLGHEIEIKVQGA-ASPTDTYVSTFG---GVVT 169 (321)
T ss_dssp CCCCEEEEEEECCCSCTTCCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHSC-CCSHHHHHHHHC---SEEE
T ss_pred CCCCEEEEEECCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCC-CcHHHHHHHHcC---CeEE
Confidence 3579999999999999999999999999999999999999999999999999998 9999 567999999996 4566
Q ss_pred eeeCCCeeEEeecCCCceEEEEecCcc
Q 020779 90 IDFNPIRTTDVQLPAGGTFVVAHSLAE 116 (321)
Q Consensus 90 id~~~~~~~~i~~p~~~~~vv~~S~v~ 116 (321)
+ . + .+.+++| ++.+++++|+++
T Consensus 170 ~-~-~--~~~l~~p-~~~~vlv~p~~~ 191 (321)
T 4hac_A 170 I-P-E--RRKLKTP-DCGIVIGDTGVF 191 (321)
T ss_dssp E-T-T--CCEECCC-CCEEEEEECCCC
T ss_pred E-c-C--CceeccC-CCEEEEEECCCC
Confidence 5 1 1 1233455 899999999983
No 15
>1h72_C HK, homoserine kinase; transferase, threonine biosynthesis; HET: ANP; 1.8A {Methanococcus jannaschii} SCOP: d.14.1.5 d.58.26.1 PDB: 1fwl_A 1fwk_A* 1h73_A* 1h74_A*
Probab=99.83 E-value=1e-19 Score=169.41 Aligned_cols=169 Identities=14% Similarity=0.110 Sum_probs=135.0
Q ss_pred ccEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH-hhCCCCCccccee-eeeccCCceEEe
Q 020779 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQAI-SIMAKSGFAELI 90 (321)
Q Consensus 13 ~G~~i~I~s~IP~gsGLsSSAAl~VA~~~Al~~l~g~~ls~~ela~la~~aE~-~~G~~~G~mDq~a-~~~g~~g~~l~i 90 (321)
+|+++.+.++||.|+|||||||.++|++.|+++++|.++++++++++|+++|. .+|.|++ |+.+ +++| |.+++.
T Consensus 75 ~g~~i~i~~~iP~g~GLGSSsa~~~a~~~al~~l~~~~l~~~~l~~la~~~e~~~~g~~~~--ddv~~~~~g--g~~~~~ 150 (296)
T 1h72_C 75 KGVKITIKKGVKAGSGLGSSAASSAGTAYAINELFKLNLDKLKLVDYASYGELASSGAKHA--DNVAPAIFG--GFTMVT 150 (296)
T ss_dssp CEEEEEEECSSCTTSSSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHSSCCC--TTHHHHHHC--SEEEEE
T ss_pred CCeEEEEEcCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcCcccCCCCc--cchHHHHhC--CEEEEE
Confidence 59999999999999999999999999999999999999999999999999998 8899885 6654 6887 455555
Q ss_pred eeCCCeeEEeecCCCceEEEEecCccchhhcccccchHHHHHHHHHHHHHHHHHhCCCchhhhcccCcchhhHhHHhhhh
Q 020779 91 DFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFA 170 (321)
Q Consensus 91 d~~~~~~~~i~~p~~~~~vv~~S~v~~~k~~~a~~~Yn~Rv~Ec~~Aa~~L~~~~gi~~~~~~~~~~~Lrdv~~~~~~~~ 170 (321)
+..+..++++++|+++.+++++++++ ..+ ..+.+ .|.
T Consensus 151 ~~~~~~~~~~~~~~~~~~vl~~p~~~---~~T------------~~~~~------------------~l~---------- 187 (296)
T 1h72_C 151 NYEPLEVLHIPIDFKLDILIAIPNIS---INT------------KEARE------------------ILP---------- 187 (296)
T ss_dssp ETTTTEEEEECCCSCCCEEEECCSSC---CCH------------HHHHH------------------TSC----------
T ss_pred eCCceEEEEEcCCCCeEEEEEeCCCC---ccH------------HHHHH------------------hcc----------
Confidence 65566688999888899999999972 332 00000 000
Q ss_pred cCCCCCCcHHHHHHhhccCCCCHHHHHHHhhhhhhHHhhccCCchhhhhhhhhhhhhhhhhhhhhHhHHHHHHHHHHhcC
Q 020779 171 CKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSN 250 (321)
Q Consensus 171 ~~~~~~~~~~~v~~~l~~~~~t~eel~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~Ra~Hv~tE~~RV~~~~~aL~~~ 250 (321)
. ..+..|.+.|..|+.++.++|+++
T Consensus 188 ------------------------------------------------------~-~~~~~~~~~~~~~~~~~~~al~~~ 212 (296)
T 1h72_C 188 ------------------------------------------------------K-AVGLKDLVNNVGKACGMVYALYNK 212 (296)
T ss_dssp ------------------------------------------------------S-CCCHHHHHHHHHHHHHHHHHHHTT
T ss_pred ------------------------------------------------------C-cCcHHHHHHHHHHHHHHHHHHHcC
Confidence 0 012247777888999999999999
Q ss_pred CCChHHHHHHHHHH--HHhhhhhhhhcCCCCHHhH-HHHHHHHh
Q 020779 251 LSEEDKLKKLGDLM--NDSHHSCSVLYECRYMHDC-AFHIFLHF 291 (321)
Q Consensus 251 d~~~~~~~~lG~LM--n~SH~Slr~~ye~ScpEl~-~~~~~~~~ 291 (321)
| ++.||++| |..|++++. ++|||++ +++.+++.
T Consensus 213 d-----~~~~~~~~~~n~~h~~~~~---~~~p~l~~~~~~~~~~ 248 (296)
T 1h72_C 213 D-----KSLFGRYMMSDKVIEPVRG---KLIPNYFKIKEEVKDK 248 (296)
T ss_dssp C-----HHHHHHHHTTCCSSHHHHH---TTSTTHHHHHHHHTTT
T ss_pred C-----HHHHHHHHhcCcchhhhhh---ccCccHHHHHHHHHhh
Confidence 9 99999999 888999885 7999975 66676653
No 16
>1kkh_A Mevalonate kinase; mixed beta sheet, phosphate-binding loop, beta-alpha-beta, transferase; 2.40A {Methanocaldococcus jannaschii} SCOP: d.14.1.5 d.58.26.3 PDB: 1vis_A
Probab=99.81 E-value=3.7e-19 Score=167.29 Aligned_cols=99 Identities=19% Similarity=0.151 Sum_probs=85.5
Q ss_pred CccEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH-hhCCCCCcccceeeeeccCCceEEe
Q 020779 12 FQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSGFAELI 90 (321)
Q Consensus 12 ~~G~~i~I~s~IP~gsGLsSSAAl~VA~~~Al~~l~g~~ls~~ela~la~~aE~-~~G~~~G~mDq~a~~~g~~g~~l~i 90 (321)
.+|+++.+.++||.|+|||||||+++|++.|+++++|.++++++++++|+++|+ ++|.++| +|+.++++| |. +++
T Consensus 97 ~~g~~i~i~~~iP~~~GLGsSsa~~~a~~~al~~l~~~~l~~~~l~~~a~~~E~~~~g~~sg-~D~~~~~~G--g~-~~~ 172 (317)
T 1kkh_A 97 KTGFKINISSKIPISCGLGSSASITIGTIKAVSGFYNKELKDDEIAKLGYMVEKEIQGKASI-TDTSTITYK--GI-LEI 172 (317)
T ss_dssp CSCEEEEEEECSCSSSSSCHHHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHSSSCCS-HHHHHHHHC--SE-EEE
T ss_pred CCCeEEEEecCCCCCCCchHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCch-HHHHHHHhC--Ce-EEE
Confidence 479999999999999999999999999999999999999999999999999998 9999877 899999997 43 444
Q ss_pred eeCCCeeEEeecC--C----CceEEEEecCcc
Q 020779 91 DFNPIRTTDVQLP--A----GGTFVVAHSLAE 116 (321)
Q Consensus 91 d~~~~~~~~i~~p--~----~~~~vv~~S~v~ 116 (321)
++.+++++++| + ++.+++++++++
T Consensus 173 --~~~~~~~~~~~~~~~l~~~~~~vl~~~~~~ 202 (317)
T 1kkh_A 173 --KNNKFRKIKGEFEEFLKNCKFLIVYAEKRK 202 (317)
T ss_dssp --SSSCEEEECHHHHHHHHTCCEEEEEEECCC
T ss_pred --cCCCceEecCCcccccccCcEEEEEECCCc
Confidence 45556777653 1 258999999983
No 17
>2gs8_A Mevalonate pyrophosphate decarboxylase; streptococcus pyogen structural genomics, PSI, protein structure initiative; HET: MSE; 1.50A {Streptococcus pyogenes m1 gas}
Probab=99.68 E-value=5.2e-16 Score=146.36 Aligned_cols=158 Identities=15% Similarity=0.086 Sum_probs=114.2
Q ss_pred ccEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhCCCCCcccceeeeeccCCceEEeee
Q 020779 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 92 (321)
Q Consensus 13 ~G~~i~I~s~IP~gsGLsSSAAl~VA~~~Al~~l~g~~ls~~ela~la~~aE~~~G~~~G~mDq~a~~~g~~g~~l~id~ 92 (321)
+|++|.+.++||.++|||||||..+|++.|+++++|.+++++++++++++.| |.+++.+++- +++...
T Consensus 91 ~g~~I~i~~~IP~~~GLGSSaA~~vA~~~al~~l~g~~ls~~el~~la~~~~---G~~~~~~~GG---------~~~~~~ 158 (317)
T 2gs8_A 91 AFVKMETQNNMPTAAGLSSSSSGLSALVKACDQLFDTQLDQKALAQKAKFAS---GSSSRSFFGP---------VAAWDK 158 (317)
T ss_dssp CCEEEEEECCSCGGGCCCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHH---GGGGGGGSCS---------EEEECT
T ss_pred CCeEEEEeCCCCCCCchHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhhc---chhHhhhcCC---------hheEee
Confidence 6899999999999999999999999999999999999999999999998875 2223333332 222222
Q ss_pred CCCeeEEeecCCCce--EEEEecCccchhhcccccchHHHHHHHHHHHHHHHHHhCCCchhhhcccCcchhhHhHHhhhh
Q 020779 93 NPIRTTDVQLPAGGT--FVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFA 170 (321)
Q Consensus 93 ~~~~~~~i~~p~~~~--~vv~~S~v~~~k~~~a~~~Yn~Rv~Ec~~Aa~~L~~~~gi~~~~~~~~~~~Lrdv~~~~~~~~ 170 (321)
...+....|+|.++. +++++++. |+...+..|+.++ .+.
T Consensus 159 ~~~~~~~~~~~~~~~~~v~i~~~~~---~~~~tt~~~~~~~----------~~~-------------------------- 199 (317)
T 2gs8_A 159 DSGAIYKVETDLKMAMIMLVLNAAK---KPISSREGMKLCR----------DTS-------------------------- 199 (317)
T ss_dssp TTCCEEECCCCCCEEEEEEECCCSS---CCSCHHHHHHHHH----------HHC--------------------------
T ss_pred CCCceeEEEccccccEEEEEEECCC---cCcccHHHHHHHh----------hcC--------------------------
Confidence 223334455555655 44457765 4555555555211 000
Q ss_pred cCCCCCCcHHHHHHhhccCCCCHHHHHHHhhhhhhHHhhccCCchhhhhhhhhhhhhhhhhhhhhHhHHHHHHHHHHhcC
Q 020779 171 CKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSN 250 (321)
Q Consensus 171 ~~~~~~~~~~~v~~~l~~~~~t~eel~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~Ra~Hv~tE~~RV~~~~~aL~~~ 250 (321)
+ ...+|+.|+ ..|+.+++.+|.++
T Consensus 200 ----------------------------------~-------------------~~~~~~~~~---~~~~~~~~~al~~~ 223 (317)
T 2gs8_A 200 ----------------------------------T-------------------TFDQWVEQS---AIDYQHMLTYLKTN 223 (317)
T ss_dssp ----------------------------------T-------------------THHHHHHHH---HHHHHHHHHHHHTT
T ss_pred ----------------------------------H-------------------HHHHHHHHH---HHHHHHHHHHHHcC
Confidence 0 011233442 67888999999999
Q ss_pred CCChHHHHHHHHHHHHhhhhhhhhcCCCCHHh
Q 020779 251 LSEEDKLKKLGDLMNDSHHSCSVLYECRYMHD 282 (321)
Q Consensus 251 d~~~~~~~~lG~LMn~SH~Slr~~ye~ScpEl 282 (321)
| ++.||++|+++|.++.+.|..+||+.
T Consensus 224 d-----~~~lg~~~~~~~~~l~~~~~~~~p~~ 250 (317)
T 2gs8_A 224 N-----FEKVGQLTEANALAMHATTKTANPPF 250 (317)
T ss_dssp C-----HHHHHHHHHHHHHHHHHHHTTSSSCC
T ss_pred C-----HHHHHHHHHHHHHHHHHHhhccCCCc
Confidence 9 99999999999999999999999884
No 18
>1fi4_A Mevalonate 5-diphosphate decarboxylase; mixed alpha/beta structure, ATP binding, CHOL biosynthesis, structural genomics, PSI; 2.27A {Saccharomyces cerevisiae} SCOP: d.14.1.5 d.58.26.2
Probab=99.44 E-value=2.2e-12 Score=126.71 Aligned_cols=159 Identities=12% Similarity=0.122 Sum_probs=112.1
Q ss_pred CccEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhCCCCCcccceeeeeccCCceEEee
Q 020779 12 FQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELID 91 (321)
Q Consensus 12 ~~G~~i~I~s~IP~gsGLsSSAAl~VA~~~Al~~l~g~~ls~~ela~la~~aE~~~G~~~G~mDq~a~~~g~~g~~l~id 91 (321)
..|++|.+.++||.++|||||||..+|++.|+++++|.++++++++++|.+.+- +...+++| +++..+
T Consensus 121 ~~gv~I~i~~~IP~~aGLGSSAA~aaA~l~Aln~l~gl~Ls~~eLa~lA~~g~G---------s~~~sl~G---G~v~~~ 188 (416)
T 1fi4_A 121 QWKLHIVSENNFPTAAGLASSAAGFAALVSAIAKLYQLPQSTSEISRIARKGSG---------SACRSLFG---GYVAWE 188 (416)
T ss_dssp GSCEEEEEEECCCTTSCCCHHHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHG---------GGGGGGSS---SEEEEE
T ss_pred CCcEEEEEecCCcCcCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhccCC---------chheEeeC---CcEEEe
Confidence 469999999999999999999999999999999999999999999999987752 33345554 333333
Q ss_pred eC------CCeeEEeecC---CCce--EEEEecCccchhhcccccchHHHHHHHHHHHHHHHHHhCCCchhhhcccCcch
Q 020779 92 FN------PIRTTDVQLP---AGGT--FVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLS 160 (321)
Q Consensus 92 ~~------~~~~~~i~~p---~~~~--~vv~~S~v~~~k~~~a~~~Yn~Rv~Ec~~Aa~~L~~~~gi~~~~~~~~~~~Lr 160 (321)
.. +....+++.+ +++. +++++++. |+...+..|+.++.. . .
T Consensus 189 ~G~~~~~~~~~~~~l~~~~~~p~l~~vvlv~~~~~---~~~sst~~~~~~~~~----------~-------------~-- 240 (416)
T 1fi4_A 189 MGKAEDGHDSMAVQIADSSDWPQMKACVLVVSDIK---KDVSSTQGMQLTVAT----------S-------------E-- 240 (416)
T ss_dssp CCSCTTCTTCEEEEEECGGGSTTEEEEEEEECCCS---CCCCHHHHHHHHHHH----------C-------------S--
T ss_pred cCCcCCCCCceeEEecCccCCcccEEEEEEECCCC---CCcCCHHHHHHHhhc----------C-------------H--
Confidence 21 1223455432 3565 56666654 455555555432210 0 0
Q ss_pred hhHhHHhhhhcCCCCCCcHHHHHHhhccCCCCHHHHHHHhhhhhhHHhhccCCchhhhhhhhhhhhhhhhhhhhhHhHHH
Q 020779 161 DVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRV 240 (321)
Q Consensus 161 dv~~~~~~~~~~~~~~~~~~~v~~~l~~~~~t~eel~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~Ra~Hv~tE~~RV 240 (321)
...+|+.|+. ..|+
T Consensus 241 ----------------------------------------------------------------~~~~~~~~i~--~~~~ 254 (416)
T 1fi4_A 241 ----------------------------------------------------------------LFKERIEHVV--PKRF 254 (416)
T ss_dssp ----------------------------------------------------------------HHHHHHHTHH--HHHH
T ss_pred ----------------------------------------------------------------hHHHHHHHHH--HHHH
Confidence 0012333322 3688
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHhhhhhhhhcCCCCHH
Q 020779 241 HAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECRYMH 281 (321)
Q Consensus 241 ~~~~~aL~~~d~~~~~~~~lG~LMn~SH~Slr~~ye~ScpE 281 (321)
.+++.+|.++| ++.||++|.++|..+...|..++|+
T Consensus 255 ~~l~~AL~~gD-----~~~~g~~~~~d~~~lh~~~~~~~p~ 290 (416)
T 1fi4_A 255 EVMRKAIVEKD-----FATFAKETMMDSNSFHATCLDSFPP 290 (416)
T ss_dssp HHHHHHHHTTC-----HHHHHHHHHHHHHHHHHHHHTSSSC
T ss_pred HHHHHHHHcCC-----HHHHHHHHHHHHHHHHHHhhccCCc
Confidence 89999999999 9999999999999999988888775
No 19
>3hul_A HSK, HK, homoserine kinase; structural genomics, putative homoserine kinase, THRB, amino-acid biosynthesis, ATP-binding, cytoplasm; 2.19A {Listeria monocytogenes}
Probab=99.38 E-value=3.1e-12 Score=120.22 Aligned_cols=94 Identities=14% Similarity=0.047 Sum_probs=71.8
Q ss_pred cCccEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhCCCCCcccce-eeeeccCCceEE
Q 020779 11 KFQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQA-ISIMAKSGFAEL 89 (321)
Q Consensus 11 ~~~G~~i~I~s~IP~gsGLsSSAAl~VA~~~Al~~l~g~~ls~~ela~la~~aE~~~G~~~G~mDq~-a~~~g~~g~~l~ 89 (321)
..+|+++.|.++||.++|||||||..+|++.|+++++|.+++++++++++.+.|. . .|+. .+++| +..+
T Consensus 68 ~~~g~~i~i~~~iP~~~GLGsssa~~~a~~~al~~~~~~~l~~~el~~la~~~eg---~----~ddv~~~~~G---G~~~ 137 (298)
T 3hul_A 68 NLTPHHLVMTCDIPPARGLGSSSAAVVAGIELANTLAELNLSKEEKVRIAAEIEG---H----PDNVAPAVLG---NWVV 137 (298)
T ss_dssp TCCCEEEEEEECSCTTSSSSHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHS---C----STTHHHHHHC---SEEE
T ss_pred cCCceEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcC---C----cccCcccccC---CEEE
Confidence 3579999999999999999999999999999999999999999999999999992 1 2333 33454 2333
Q ss_pred eeeCC--CeeEEeecCCCceEEEEecCc
Q 020779 90 IDFNP--IRTTDVQLPAGGTFVVAHSLA 115 (321)
Q Consensus 90 id~~~--~~~~~i~~p~~~~~vv~~S~v 115 (321)
..... ..+.++++| ++.+++++++.
T Consensus 138 ~~g~ge~~~~~~~~~p-~~~~vlv~p~~ 164 (298)
T 3hul_A 138 GAKLDGEDFYVRHLFP-DCALIAFIPKA 164 (298)
T ss_dssp EEEETTEEEEEEECCC--CEEEEEECCC
T ss_pred EEeCCCcEEEEEcCCC-CeEEEEEECCC
Confidence 22222 234466655 58999999887
No 20
>2v8p_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; nucleotide-binding, isoprene biosynthesis, transferase, ATP-binding, non-mevalonate; HET: CDP ADP; 2.1A {Aquifex aeolicus} PDB: 2v2v_A* 2v2q_A* 2v34_A* 2v2z_A* 2vf3_A*
Probab=99.30 E-value=9.1e-12 Score=114.91 Aligned_cols=91 Identities=10% Similarity=0.053 Sum_probs=76.1
Q ss_pred ccEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhCCCCCcccceeeeeccCCceEEeee
Q 020779 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 92 (321)
Q Consensus 13 ~G~~i~I~s~IP~gsGLsSSAAl~VA~~~Al~~l~g~~ls~~ela~la~~aE~~~G~~~G~mDq~a~~~g~~g~~l~id~ 92 (321)
+|+++.+.++||.|+|||||||..+|++.|+++++|.++++++++++|.++|. ++|+.++++++...|.
T Consensus 80 ~g~~i~i~~~IP~g~GLGsSsa~a~a~l~al~~l~~~~l~~~el~~la~~~e~--dv~~~~~gg~~~~~g~--------- 148 (271)
T 2v8p_A 80 INYSIFIQKNIPPGAGLGGGSSNLAVVLKKVNELLGSPLSEEELRELVGSISA--DAPFFLLGKSAIGRGK--------- 148 (271)
T ss_dssp CCEEEEEECCSCTTSSSCHHHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHCT--TTGGGGTCSEEEEETT---------
T ss_pred CCeEEEEEeCCCCCCCCchHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCC--CHHHHhcCCeEEEEEc---------
Confidence 69999999999999999999999999999999999999999999999999984 5666666666555443
Q ss_pred CCCeeEEeecCCCceEEEEecCc
Q 020779 93 NPIRTTDVQLPAGGTFVVAHSLA 115 (321)
Q Consensus 93 ~~~~~~~i~~p~~~~~vv~~S~v 115 (321)
...++++++|.++.++++++++
T Consensus 149 -g~~~~~l~~~~~~~~vl~~p~~ 170 (271)
T 2v8p_A 149 -GEVLEPVETEISGKITLVIPQV 170 (271)
T ss_dssp -TTEEEECCCCCCSEEEEEECSS
T ss_pred -CCEEEEccCCCCcEEEEEeCCC
Confidence 2235666644489999999987
No 21
>2ww4_A 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; non-mevalonate pathway, isoprenoid biosynthesis, transferase; HET: ADP; 2.00A {Escherichia coli} PDB: 1oj4_A*
Probab=99.25 E-value=6.8e-12 Score=116.94 Aligned_cols=90 Identities=18% Similarity=0.084 Sum_probs=72.2
Q ss_pred ccEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhCCCCCcccceeeeeccCCceEEeee
Q 020779 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 92 (321)
Q Consensus 13 ~G~~i~I~s~IP~gsGLsSSAAl~VA~~~Al~~l~g~~ls~~ela~la~~aE~~~G~~~G~mDq~a~~~g~~g~~l~id~ 92 (321)
+|+++.+.++||.|+|||||||.++|++.|+++++|.++++++++++|.++|. ++++.++++++...|.
T Consensus 88 ~g~~i~i~~~IP~g~GLGsSsa~~~a~l~al~~l~~~~l~~~~l~~la~~~e~--dv~~~~~gg~~~~~g~--------- 156 (283)
T 2ww4_A 88 SGANISIDKRLPMGGGLGGGSSNAATVLVALNHLWQCGLSMDELAEMGLTLGA--DVPVFVRGHAAFAEGV--------- 156 (283)
T ss_dssp CEEEEEEECCCC-CTTSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHTTCT--THHHHHHTBCEEEETT---------
T ss_pred CceEEEEEeCCCCCCCccHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCC--CHHHhhcCCeEEEEec---------
Confidence 69999999999999999999999999999999999999999999999999884 3444444454444332
Q ss_pred CCCeeEEeecCCCceEEEEecCc
Q 020779 93 NPIRTTDVQLPAGGTFVVAHSLA 115 (321)
Q Consensus 93 ~~~~~~~i~~p~~~~~vv~~S~v 115 (321)
....+++++| ++.++++++++
T Consensus 157 -g~~~~~l~~~-~~~~vl~~p~~ 177 (283)
T 2ww4_A 157 -GEILTPVDPP-EKWYLVAHPGV 177 (283)
T ss_dssp -TTEEEECCCC-CCEEEEECCSC
T ss_pred -CccceEcCCC-CcEEEEEeCCC
Confidence 2234566665 78999999987
No 22
>3qt5_A Mevalonate diphosphate decarboxylase; GHMP kinase family, lyase; 1.85A {Staphylococcus epidermidis} PDB: 3qt6_A* 3qt7_A* 4dpt_A* 4du7_A* 4dpu_A* 3qt8_A* 4dpx_A 4dpy_A* 4du8_A* 4dpw_A* 2hk2_A 2hk3_A
Probab=99.17 E-value=7.3e-10 Score=105.63 Aligned_cols=91 Identities=11% Similarity=0.068 Sum_probs=68.0
Q ss_pred ccEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhCCCCCcccceeeeeccCCceEEeee
Q 020779 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 92 (321)
Q Consensus 13 ~G~~i~I~s~IP~gsGLsSSAAl~VA~~~Al~~l~g~~ls~~ela~la~~aE~~~G~~~G~mDq~a~~~g~~g~~l~id~ 92 (321)
.|+++.+.++||.++|||||||..+|++.|+++++|.++++++++++|.+.| | |-..+++| +.++.+.
T Consensus 93 ~~~~i~~~~~iP~~~GLgSSaa~~~a~~~a~~~l~~~~l~~~el~~la~~~~-------g--~~~~~~~G---G~~~~~~ 160 (332)
T 3qt5_A 93 LHARIESENYVPTAAGLASSASAYAALAAACNEALSLNLSDTDLSRLARRGS-------G--SASRSIFG---GFAEWEK 160 (332)
T ss_dssp CEEEEEEEEESCGGGTCCCHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHC-------G--GGGGGGSC---SEEEEEC
T ss_pred CCEEEEEecCCCCCCCcchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhc-------C--CchhhhcC---CeEEEec
Confidence 5899999999999999999999999999999999999999999999999885 2 33445665 3333332
Q ss_pred C-CC---eeEEee---cCCCceEEEEecCc
Q 020779 93 N-PI---RTTDVQ---LPAGGTFVVAHSLA 115 (321)
Q Consensus 93 ~-~~---~~~~i~---~p~~~~~vv~~S~v 115 (321)
. .. ...+++ .++++.++++....
T Consensus 161 g~~~~~~~~~~l~~~~~~~~l~~vv~vp~~ 190 (332)
T 3qt5_A 161 GHDDLTSYAHGINSNGWEKDLSMIFVVINN 190 (332)
T ss_dssp CSSTTTCEEEEECCTTGGGGEEEEEECCCC
T ss_pred CCCCccceeeecccccCCCCcEEEEEEEcC
Confidence 1 11 134554 23467776665544
No 23
>3pyf_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; transferase; HET: ANP; 1.70A {Mycobacterium tuberculosis} PDB: 3pyd_A* 3pye_A* 3pyg_A* 4ed4_A* 4dxl_A* 4emd_A*
Probab=99.14 E-value=1.3e-10 Score=109.49 Aligned_cols=91 Identities=13% Similarity=0.115 Sum_probs=77.5
Q ss_pred ccEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhCCCCCcccceeeeeccCCceEEeee
Q 020779 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 92 (321)
Q Consensus 13 ~G~~i~I~s~IP~gsGLsSSAAl~VA~~~Al~~l~g~~ls~~ela~la~~aE~~~G~~~G~mDq~a~~~g~~g~~l~id~ 92 (321)
+|+++.|.++||.|+|||||||..+|++.|+++++|.+++++++++++.+.| .|...+++| +..+...
T Consensus 87 ~~~~i~i~~~iP~~~GLGsssa~a~a~l~al~~~~~~~l~~~~l~~la~~~~---------~Dv~~~~~G---g~~~~~g 154 (306)
T 3pyf_A 87 PDVSIMIDKSIPVAGGMAGGSADAAAVLVAMNSLWELNVPRRDLRMLAARLG---------SDVPFALHG---GTALGTG 154 (306)
T ss_dssp CCEEEEEEECSCTTSSSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHC---------TTHHHHHHB---SEEEECS
T ss_pred CCeEEEEecCCCCCCCcchHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhC---------CCCceeecC---ceEEEEe
Confidence 5999999999999999999999999999999999999999999999999987 266667775 3444333
Q ss_pred CCCeeEEeecCCCceEEEEecCc
Q 020779 93 NPIRTTDVQLPAGGTFVVAHSLA 115 (321)
Q Consensus 93 ~~~~~~~i~~p~~~~~vv~~S~v 115 (321)
....+++++.|+++.++++++++
T Consensus 155 ~ge~~~~l~~~~~~~~vl~~P~~ 177 (306)
T 3pyf_A 155 RGEELATVLSRNTFHWVLAFADS 177 (306)
T ss_dssp SSSCCEEECCSSCEEEEEEECSS
T ss_pred eCCeEEEccCCCCcEEEEEECCC
Confidence 33456788877889999999998
No 24
>1uek_A 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase; non-mevalonate pathway, GHMP superfamily; 1.70A {Thermus thermophilus} SCOP: d.14.1.5 d.58.26.5
Probab=99.08 E-value=2.3e-10 Score=105.51 Aligned_cols=87 Identities=15% Similarity=0.028 Sum_probs=69.8
Q ss_pred ccEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhCCCCCcccceeeeeccCCceEEeee
Q 020779 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 92 (321)
Q Consensus 13 ~G~~i~I~s~IP~gsGLsSSAAl~VA~~~Al~~l~g~~ls~~ela~la~~aE~~~G~~~G~mDq~a~~~g~~g~~l~id~ 92 (321)
+|+++.+.++||.|+|||||||..+|++.|+++++|.++ +++++|.++|. |..++++| +..+...
T Consensus 75 ~g~~i~i~~~IP~g~GLGSSsa~a~a~l~al~~l~~~~l---~l~~la~~~g~---------dv~~~~~G---g~~~~~g 139 (275)
T 1uek_A 75 GGVRILLEKRIPEGAGLGGGSSDAAQVLLALQALYPAEV---DLFALARTLGA---------DVPFFLLG---RGAEARG 139 (275)
T ss_dssp CEEEEEEECCSCSSSSSCHHHHHHHHHHHHHHHHSCSCC---CHHHHHHHHCT---------THHHHHHC---SEEEEET
T ss_pred CCEEEEEecCCCCcCcccHHHHHHHHHHHHHHHHcCCCh---HHHHHHHHhCC---------ChHHHhcC---CeEEEEc
Confidence 699999999999999999999999999999999999988 88899888863 55555553 3333333
Q ss_pred CCCeeEEeecCCCceEEEEecCc
Q 020779 93 NPIRTTDVQLPAGGTFVVAHSLA 115 (321)
Q Consensus 93 ~~~~~~~i~~p~~~~~vv~~S~v 115 (321)
....+++++ ++++.++++++++
T Consensus 140 ~g~~~~~l~-~~~~~~vl~~p~~ 161 (275)
T 1uek_A 140 VGERLKPLA-LPPVPAVVFFPGL 161 (275)
T ss_dssp TTTEEEEEC-CCCEEEEEEECCC
T ss_pred cCceeEEcc-CCCcEEEEEeCCC
Confidence 333567777 5689999999987
No 25
>3lto_A Mevalonate diphosphate decarboxylase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.27A {Legionella pneumophila}
Probab=98.94 E-value=2.4e-08 Score=95.10 Aligned_cols=51 Identities=29% Similarity=0.151 Sum_probs=48.3
Q ss_pred ccEEEEEEeCCCCCCCCChHHHHHHHHH----HHHHHHhCCCC-CHHHHHHHHHHH
Q 020779 13 QLFNHINSLFFNLGSGLSSSTAFVCSST----VALMAAFGVEV-PKKEIAQLTCEC 63 (321)
Q Consensus 13 ~G~~i~I~s~IP~gsGLsSSAAl~VA~~----~Al~~l~g~~l-s~~ela~la~~a 63 (321)
.|++|.+.++||.++|||||||..+|++ .|+++++|.++ +++|++++|...
T Consensus 91 ~gv~I~~~n~IP~aaGLgSSAA~~aA~~~~~~~aln~l~gl~l~s~~eL~~lA~~g 146 (323)
T 3lto_A 91 GGFLIQSSNNFPHSSGLASSASSFAALTKCASIALSELTQKPLPSIDEQAQLSRLG 146 (323)
T ss_dssp CCEEEEEEESSCTTTTCCCHHHHHHHHHHHHHHHHHHHHTCCCCCHHHHHHHHHTT
T ss_pred CCEEEEEEeCCCCccCcchhHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHh
Confidence 6999999999999999999999999999 99999999999 999999998654
No 26
>2hke_A Diphosphomevalonate decarboxylase, putative; mevalonate diphosphate decarboxylase, lyase; 1.80A {Trypanosoma brucei}
Probab=98.85 E-value=2.7e-08 Score=96.28 Aligned_cols=59 Identities=22% Similarity=0.293 Sum_probs=50.4
Q ss_pred CccEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhCCCCCcccceeeeec
Q 020779 12 FQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMA 82 (321)
Q Consensus 12 ~~G~~i~I~s~IP~gsGLsSSAAl~VA~~~Al~~l~g~~ls~~ela~la~~aE~~~G~~~G~mDq~a~~~g 82 (321)
..|++|.+.++||.++|||||||..+|++.|+++++|.+ +++++++...+ | |...+++|
T Consensus 95 ~~~v~I~~~~~IP~aaGLGSSAA~aaA~l~Aln~l~gl~---~eL~~lA~~g~-------G--sva~s~~G 153 (380)
T 2hke_A 95 NKKVNIVSENNFPTAAGMASSASGYCAMSAALIRAFKST---TNVSMLARLGS-------G--SACRSAFG 153 (380)
T ss_dssp TCEEEEEEEECSCTTSCCCHHHHHHHHHHHHHHHHHTCS---SCHHHHHHHHC-------G--GGGGGGSS
T ss_pred CCCEEEEEeccCCCccCcchHHHHHHHHHHHHHHHcCCH---HHHHHHHhhcC-------c--ceeeehhC
Confidence 468999999999999999999999999999999999987 78888887653 2 44566775
No 27
>3f0n_A Mevalonate pyrophosphate decarboxylase; cholesterol biosynthesis, lipid synthesis, lyase, steroid biosynthesis, sterol biosynthesis; 1.90A {Mus musculus} PDB: 3d4j_A
Probab=98.59 E-value=4.8e-07 Score=88.58 Aligned_cols=49 Identities=18% Similarity=0.218 Sum_probs=43.9
Q ss_pred ccEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q 020779 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECE 64 (321)
Q Consensus 13 ~G~~i~I~s~IP~gsGLsSSAAl~VA~~~Al~~l~g~~ls~~ela~la~~aE 64 (321)
.|++|.+.++||.++|||||||..+|++.|+++++|. ++++.++|...+
T Consensus 122 ~~~~I~~~~~iP~aaGLgSSaA~~aA~~~a~n~l~~l---~~el~~lA~~~s 170 (414)
T 3f0n_A 122 YKVHVASVNNFPTAAGLASSAAGYACLAYTLAQVYGV---EGDLSEVARRGS 170 (414)
T ss_dssp SCEEEEEEECCCGGGCCCHHHHHHHHHHHHHHHHHTC---CSCCHHHHHHHC
T ss_pred CcEEEEEEeCCCCCcCcchhHHHHHHHHHHHHHHhCC---hHHHHHHHHHhC
Confidence 5899999999999999999999999999999999997 367777776653
No 28
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=35.70 E-value=54 Score=24.39 Aligned_cols=58 Identities=12% Similarity=0.156 Sum_probs=35.7
Q ss_pred HHHHhhccCCCCHHHHHHHhhhhhhHHhhccCCchhhhhhhhhhhhhhhhhhhhhHhHHHHHHHHHHhcCC
Q 020779 181 AVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNL 251 (321)
Q Consensus 181 ~v~~~l~~~~~t~eel~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~Ra~Hv~tE~~RV~~~~~aL~~~d 251 (321)
.+++.+. ++++.+++++.+|++...+...+. ......-+-+-...|+.+|.+.|..++
T Consensus 10 ~i~~~~~-~~~~~~~lA~~~~~s~~~l~r~fk------------~~~G~s~~~~~~~~Rl~~A~~lL~~~~ 67 (108)
T 3mn2_A 10 YIEANWM-RPITIEKLTALTGISSRGIFKAFQ------------RSRGYSPMAFAKRVRLQHAHNLLSDGA 67 (108)
T ss_dssp HHHHHTT-SCCCHHHHHHHHTCCHHHHHHHHH------------HHTSSCHHHHHHHHHHHHHHHHHHSSS
T ss_pred HHHHccc-CCCCHHHHHHHHCCCHHHHHHHHH------------HHhCcCHHHHHHHHHHHHHHHHHHcCC
Confidence 4444443 358899999999987665432211 011122244455789999999999875
No 29
>3ub0_B Non-structural protein 7, NSP7; feline coronavirus, primer-independen polymerase, replication; 2.60A {Feline infectious peritonitis virus}
Probab=34.43 E-value=15 Score=27.57 Aligned_cols=32 Identities=25% Similarity=0.488 Sum_probs=28.0
Q ss_pred hhcCCCCHHhHHHHHHHHhcccCCCccchhhhh
Q 020779 273 VLYECRYMHDCAFHIFLHFFVPMNSKILWPFCL 305 (321)
Q Consensus 273 ~~ye~ScpEl~~~~~~~~~~~~~~~~~~~~~~~ 305 (321)
++-++-|...-++..-.++-++-||| +|-+|.
T Consensus 6 KLTD~KCtnVVLl~~L~~l~veaNSk-~WayCV 37 (87)
T 3ub0_B 6 KLTEMKCTNVVLLGLLSKMHVESNSK-EWNYCV 37 (87)
T ss_dssp CCCCCSSCCHHHHHHHHHTTGGGCHH-HHHHHH
T ss_pred ccccchhhHhHHHHHHHHhhHHhhhH-HHHHHH
Confidence 45678899999999999999999998 699984
No 30
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=32.51 E-value=70 Score=23.48 Aligned_cols=60 Identities=10% Similarity=-0.056 Sum_probs=36.2
Q ss_pred HHHHHhhccCCCCHHHHHHHhhhhhhHHhhccCCchhhhhhhhhhhhhhhhhhhhhHhHHHHHHHHHHhcCC
Q 020779 180 FAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNL 251 (321)
Q Consensus 180 ~~v~~~l~~~~~t~eel~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~Ra~Hv~tE~~RV~~~~~aL~~~d 251 (321)
+.+++.+.+..++.+++++.+|++...+...+.. ...-.-+-+-...|+..|...|..++
T Consensus 9 ~~i~~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~------------~~g~s~~~~~~~~Rl~~A~~lL~~~~ 68 (103)
T 3lsg_A 9 NIIEESYTDSQFTLSVLSEKLDLSSGYLSIMFKK------------NFGIPFQDYLLQKRMEKAKLLLLTTE 68 (103)
T ss_dssp HHHHHHTTCTTCCHHHHHHHTTCCHHHHHHHHHH------------HHSSCHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHccCCCCCHHHHHHHHCcCHHHHHHHHHH------------HHCcCHHHHHHHHHHHHHHHHHHCCC
Confidence 3455555555788999999998877654322110 01111233444678889998888754
No 31
>2l1q_A Liver-expressed antimicrobial peptide 2; polypeptide, disulfides, antimicrobial protein, LEAP-2; NMR {Homo sapiens}
Probab=32.19 E-value=7.9 Score=24.99 Aligned_cols=12 Identities=33% Similarity=0.371 Sum_probs=10.0
Q ss_pred hhhhhhhcCCCC
Q 020779 268 HHSCSVLYECRY 279 (321)
Q Consensus 268 H~Slr~~ye~Sc 279 (321)
..||+|+|||+.
T Consensus 14 GA~Crd~~EC~T 25 (40)
T 2l1q_A 14 GASCRDDSECIT 25 (40)
T ss_dssp TSBCSSGGGBTT
T ss_pred chhhccchhhhh
Confidence 468999999985
No 32
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=25.13 E-value=85 Score=23.21 Aligned_cols=60 Identities=8% Similarity=0.024 Sum_probs=35.8
Q ss_pred HHHHHhhccCCCCHHHHHHHhhhhhhHHhhccCCchhhhhhhhhhhhhhhhhhhhhHhHHHHHHHHHHhcCC
Q 020779 180 FAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNL 251 (321)
Q Consensus 180 ~~v~~~l~~~~~t~eel~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~Ra~Hv~tE~~RV~~~~~aL~~~d 251 (321)
+.+.+.+.+.+++.+++++.+|++...+...+.. .....-+-+-...|+..|...|...+
T Consensus 10 ~~i~~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~------------~~G~s~~~~~~~~Rl~~A~~lL~~~~ 69 (107)
T 2k9s_A 10 QYISDHLADSNFDIASVAQHVCLSPSRLSHLFRQ------------QLGISVLSWREDQRISQAKLLLSTTR 69 (107)
T ss_dssp HHHHHTSSCSSCCHHHHHHHTTSCHHHHHHHHHH------------HHSSCHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHhccCCCCHHHHHHHHCCCHHHHHHHHHH------------HHCcCHHHHHHHHHHHHHHHHHHcCC
Confidence 3445555445688999999998876654322110 01112233445788899999888643
No 33
>2ahm_A Replicase NSP7, replicase polyprotein 1AB, light chain; SARS-COV, non-structural protein, S complex, hexadecamer, viral protein, replication; 2.40A {Sars coronavirus} SCOP: a.8.9.1 PDB: 1ysy_A 2kys_A
Probab=22.29 E-value=16 Score=27.47 Aligned_cols=31 Identities=19% Similarity=0.465 Sum_probs=25.8
Q ss_pred hcCCCCHHhHHHHHHHHhcccCCCccchhhhh
Q 020779 274 LYECRYMHDCAFHIFLHFFVPMNSKILWPFCL 305 (321)
Q Consensus 274 ~ye~ScpEl~~~~~~~~~~~~~~~~~~~~~~~ 305 (321)
+-++-|...-++..-.++-++-||| +|-+|.
T Consensus 8 LTDvKCtnVVLl~~L~~l~veaNSk-~WayCV 38 (88)
T 2ahm_A 8 MSDVKCTSVVLLSVLQQLRVESSSK-LWAQCV 38 (88)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTTSHH-HHHHHH
T ss_pred ccccchhhhHHHHHHHHhhHHhhhH-HHHHHH
Confidence 3355678888999999999999998 699984
No 34
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=22.24 E-value=1.2e+02 Score=22.36 Aligned_cols=59 Identities=8% Similarity=-0.071 Sum_probs=35.3
Q ss_pred HHHHHhhccCCCCHHHHHHHhhhhhhHHhhccCCchhhhhhhhhhhhhhhhhhhhhHhHHHHHHHHHHhcCC
Q 020779 180 FAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNL 251 (321)
Q Consensus 180 ~~v~~~l~~~~~t~eel~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~Ra~Hv~tE~~RV~~~~~aL~~~d 251 (321)
+.+++.+.+ +.+.+++++.+|++...+...+.. .....-+-+-...|+..|.+.|...+
T Consensus 12 ~~i~~~~~~-~~~~~~lA~~~~~S~~~l~r~fk~------------~~G~s~~~~~~~~Rl~~A~~lL~~~~ 70 (108)
T 3oou_A 12 SYITEHFSE-GMSLKTLGNDFHINAVYLGQLFQK------------EMGEHFTDYLNRYRVNYAKEELLQTK 70 (108)
T ss_dssp HHHHHHTTS-CCCHHHHHHHHTSCHHHHHHHHHH------------HHSSCHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHhcC-CCCHHHHHHHHCcCHHHHHHHHHH------------HHCcCHHHHHHHHHHHHHHHHHHcCC
Confidence 344444443 678999999999877655322210 11112233445778899999887654
No 35
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=20.85 E-value=98 Score=23.12 Aligned_cols=50 Identities=10% Similarity=0.027 Sum_probs=31.1
Q ss_pred CCCHHHHHHHhhhhhhHHhhccCCchhhhhhhhhhhhhhhhhhhhhHhHHHHHHHHHHhcCC
Q 020779 190 PYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNL 251 (321)
Q Consensus 190 ~~t~eel~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~Ra~Hv~tE~~RV~~~~~aL~~~d 251 (321)
+++.+++++.+|++...|...+.. ...-.-+-+-...|+.+|...|...+
T Consensus 23 ~~~~~~lA~~~~~S~~~l~r~fk~------------~~G~s~~~~~~~~Rl~~A~~lL~~~~ 72 (113)
T 3oio_A 23 PLSTDDIAYYVGVSRRQLERLFKQ------------YLGTVPSKYYLELRLNRARQLLQQTS 72 (113)
T ss_dssp CCCHHHHHHHHTSCHHHHHHHHHH------------HTSSCHHHHHHHHHHHHHHHHHHHCC
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHH------------HHCcCHHHHHHHHHHHHHHHHHHcCC
Confidence 478999999998876654322110 01112233445778999999998754
Done!