RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 020779
(321 letters)
>gnl|CDD|215285 PLN02521, PLN02521, galactokinase.
Length = 497
Score = 473 bits (1220), Expect = e-167
Identities = 191/252 (75%), Positives = 219/252 (86%)
Query: 26 GSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSG 85
GSGLSSS A VCS+ +A+MAA G+ KKE+AQ TC+CE+ IGTQSGGMDQAISIMA+ G
Sbjct: 161 GSGLSSSAALVCSAAIAIMAALGLNFTKKEVAQFTCKCERHIGTQSGGMDQAISIMAQQG 220
Query: 86 FAELIDFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKL 145
A+LIDFNP+R TDVQLPAGGTFV+A+SLAES KA+TAA+NYNNRVVECRL AIVLA+KL
Sbjct: 221 VAKLIDFNPVRATDVQLPAGGTFVIANSLAESNKAVTAATNYNNRVVECRLAAIVLAVKL 280
Query: 146 GMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLT 205
GM +EAISKVKTLSDVEGLCV+FA +GSSDP AVKE L + PYTA +IE+I E LT
Sbjct: 281 GMSAEEAISKVKTLSDVEGLCVSFAGSHGSSDPAVAVKELLHEGPYTAEEIEEILGESLT 340
Query: 206 SIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMN 265
SIF NS +SL VL AAK +KLHQRA HVYSEAKRVHAF+DTVSS+LSEE+KLKKLGDLMN
Sbjct: 341 SIFKNSPTSLAVLKAAKHFKLHQRAVHVYSEAKRVHAFRDTVSSSLSEEEKLKKLGDLMN 400
Query: 266 DSHHSCSVLYEC 277
+SH+SCSVLYEC
Sbjct: 401 ESHYSCSVLYEC 412
>gnl|CDD|223231 COG0153, GalK, Galactokinase [Carbohydrate transport and
metabolism].
Length = 390
Score = 113 bits (286), Expect = 7e-29
Identities = 66/255 (25%), Positives = 98/255 (38%), Gaps = 67/255 (26%)
Query: 25 LGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECE-QFIGTQSGGMDQAISIMAK 83
+G+GLSSS A + +AL F + + K E+A++ E QF+G G MDQ S K
Sbjct: 126 IGAGLSSSAALEVAVALALQRLFNLPLDKAELAKIAQVAENQFVGVNCGIMDQLASAFGK 185
Query: 84 SGFAELIDFNPIRTTDVQLPAGG-TFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLA 142
A L+D + V P GG + V+ +S K A S YN R EC A L
Sbjct: 186 KDHALLLDCRTLEYEPVPFPVGGVSIVIVNSNV---KRELADSEYNERRAECEEAAEFLG 242
Query: 143 IKLGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEE 202
+ + K+L DV + + A++ + +P
Sbjct: 243 VSI-----------KSLRDV------------TDEEFAALQAEIEVDP------------ 267
Query: 203 KLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGD 262
K+ +RA HV +E +RV + L + G+
Sbjct: 268 ----------------------KIARRARHVVTENQRV---LEAA--KALRSGDLTEFGE 300
Query: 263 LMNDSHHSCSVLYEC 277
LMN+SH S YE
Sbjct: 301 LMNESHESLRDDYEV 315
>gnl|CDD|232841 TIGR00131, gal_kin, galactokinase. Galactokinase is a member of
the GHMP kinases (Galactokinase, Homoserine kinase,
Mevalonate kinase, Phosphomevalonate kinase) and shares
with them an amino-terminal domain probably related to
ATP binding.The galactokinases found by This model are
divided into two sets. Prokaryotic forms are generally
shorter. The eukaryotic forms are longer because of
additional central regions and in some cases are known
to be bifunctional, with regulatory activities that are
independent of galactokinase activity [Energy
metabolism, Sugars].
Length = 386
Score = 102 bits (255), Expect = 1e-24
Identities = 74/259 (28%), Positives = 97/259 (37%), Gaps = 73/259 (28%)
Query: 25 LGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECE-QFIGTQSGGMDQAISIMAK 83
GSGLSSS AF C+ L + + K+I E F+G G MDQA S++ K
Sbjct: 121 TGSGLSSSAAFECAVGAVLQNMGHLPLDSKQILLRIQVAENHFVGVNCGIMDQAASVLGK 180
Query: 84 SGFAELIDFNPIRTTDVQLPAGG-TFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLA 142
A L++ ++ T + P G FV+A++ +K A SNYN R EC A LA
Sbjct: 181 EDHALLVECRSLKATPFKFPQLGIAFVIANTN---VKRTLAPSNYNTRRQECTTAANFLA 237
Query: 143 IKLGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEE 202
L D Y A I ++T+
Sbjct: 238 ATD----------KGALRDF-------------------------MNEYFARYIARLTK- 261
Query: 203 KLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRV----HAFKDTVSSNLSEEDKLK 258
+ L +RA HV SE RV A KD D K
Sbjct: 262 ------------MLPLVE-------ERAKHVVSENLRVLKAVKAMKD--------ND-FK 293
Query: 259 KLGDLMNDSHHSCSVLYEC 277
+ G LMN+SH SC YEC
Sbjct: 294 QFGALMNESHASCDDDYEC 312
>gnl|CDD|235407 PRK05322, PRK05322, galactokinase; Provisional.
Length = 387
Score = 66.0 bits (162), Expect = 4e-12
Identities = 63/262 (24%), Positives = 92/262 (35%), Gaps = 84/262 (32%)
Query: 26 GSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECE-QFIGTQSGGMDQAISIMAKS 84
G+GLSSS + + V L F +++ + E+ +L + E +FIG SG MDQ M K
Sbjct: 124 GAGLSSSASIELLTGVILKDLFNLDLDRLELVKLGQKTENEFIGVNSGIMDQFAIGMGKK 183
Query: 85 GFAELIDFNPIRTTDVQLPAGGTFVV------AHSLAESLKAITAASNYNNRVVECRLTA 138
A L+D N + V L G +V LA+ S YN R EC
Sbjct: 184 DHAILLDCNTLEYEYVPLDLGDYVIVIMNTNKRRELAD--------SKYNERRAEC---- 231
Query: 139 IVLAIKLGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEK 198
++A+ +++ D++ L L E+
Sbjct: 232 -----------EKALEELQKKLDIKSLG--------------------------ELTEEE 254
Query: 199 ITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRV----HAFKDTVSSNLSEE 254
E ++ K RA H +E +R A K
Sbjct: 255 FDEYS------------YLIKDETLLK---RARHAVTENQRTLKAVKALKA--------- 290
Query: 255 DKLKKLGDLMNDSHHSCSVLYE 276
L+K G LMN SH S YE
Sbjct: 291 GDLEKFGRLMNASHVSLRDDYE 312
>gnl|CDD|235163 PRK03817, PRK03817, galactokinase; Provisional.
Length = 351
Score = 63.9 bits (156), Expect = 2e-11
Identities = 35/111 (31%), Positives = 51/111 (45%), Gaps = 4/111 (3%)
Query: 25 LGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECE-QFIGTQSGGMDQAISIMAK 83
+G+GLSSS + + AL A+ + + K E+A L E E +F+G G MDQ K
Sbjct: 97 IGAGLSSSASLEVAVAYALNEAYNLNLSKLELALLAREAENEFVGVPCGIMDQFAVAFGK 156
Query: 84 SGFAELIDFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVEC 134
A +D + V P +V + +K A+S YN R EC
Sbjct: 157 KDHAIFLDTMTLEYEYVPFPEDYEILVFDT---GVKRELASSEYNERRQEC 204
Score = 29.6 bits (67), Expect = 2.5
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
Query: 226 LHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYE 276
L +RA +V E +RV +D L E D ++ LG+L+ +SH + YE
Sbjct: 231 LRKRAGYVLRENERVLKVRDA----LKEGD-IETLGELLTESHWDLADNYE 276
>gnl|CDD|215839 pfam00288, GHMP_kinases_N, GHMP kinases N terminal domain. This
family includes homoserine kinases, galactokinases and
mevalonate kinases.
Length = 67
Score = 56.8 bits (138), Expect = 8e-11
Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 25 LGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIM 81
LG+GL SS A + +AL FG+ + K+E+A+L E E IG S G D A S+
Sbjct: 10 LGAGLGSSAALAVALLLALNELFGLPLSKEELARLALEAEGAIGVNS-GDDVAASVY 65
>gnl|CDD|179063 PRK00555, PRK00555, galactokinase; Provisional.
Length = 363
Score = 56.4 bits (136), Expect = 6e-09
Identities = 35/120 (29%), Positives = 52/120 (43%), Gaps = 1/120 (0%)
Query: 25 LGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECE-QFIGTQSGGMDQAISIMAK 83
+GSGLSSS A C+ A+ AA G + + E A+L E +++G +G +DQ ++
Sbjct: 102 IGSGLSSSAALECAVLGAVGAATGTRIDRLEQARLAQRAENEYVGAPTGLLDQLAALFGA 161
Query: 84 SGFAELIDFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAI 143
A LIDF + V VV + + A Y R C A L +
Sbjct: 162 PKTALLIDFRDLTVRPVAFDPDAAGVVLLLMDSRARHRHAGGEYAARRASCERAAADLGV 221
Score = 32.9 bits (75), Expect = 0.22
Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 5/67 (7%)
Query: 204 LTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDL 263
++S+ A L L A +RA HV +E +RV F ++ + G L
Sbjct: 221 VSSLRAVQDRGLAALGAIADPIDARRARHVLTENQRVLDFAAALADS-----DFTAAGQL 275
Query: 264 MNDSHHS 270
+ SH S
Sbjct: 276 LTASHAS 282
>gnl|CDD|179937 PRK05101, PRK05101, galactokinase; Provisional.
Length = 382
Score = 54.9 bits (133), Expect = 2e-08
Identities = 65/247 (26%), Positives = 89/247 (36%), Gaps = 70/247 (28%)
Query: 25 LGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECE-QFIGTQSGGMDQAISIMAK 83
G+GLSSS + + + + + EIA E E QF+G G MDQ IS + K
Sbjct: 123 QGAGLSSSASLEVAVGQTFQQLYHLPLSGAEIALNGQEAENQFVGCNCGIMDQLISALGK 182
Query: 84 SGFAELIDFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAI 143
A LID + T V +P G V+ +S ++K S YN R +C A
Sbjct: 183 KDHALLIDCRSLETKAVPMPEGVAVVIINS---NVKRGLVDSEYNTRRQQCETAA----- 234
Query: 144 KLGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEK 203
VK L DV F DPV A
Sbjct: 235 --------RFFGVKALRDVT--LEQFNAVAAELDPVVA---------------------- 262
Query: 204 LTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDL 263
+RA HV +E R + S+ L+ D LK++G+L
Sbjct: 263 ------------------------KRARHVITENART---LEAASA-LAAGD-LKRMGEL 293
Query: 264 MNDSHHS 270
M +SH S
Sbjct: 294 MAESHAS 300
>gnl|CDD|215466 PLN02865, PLN02865, galactokinase.
Length = 423
Score = 49.0 bits (117), Expect = 1e-06
Identities = 61/259 (23%), Positives = 95/259 (36%), Gaps = 66/259 (25%)
Query: 26 GSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECE-QFIGTQSGGMDQAISIMAKS 84
SGLSSS A + +AL A + V ++ +L E +++G ++G +DQ+ ++++
Sbjct: 143 SSGLSSSAAVGVAYLLALENANNLTVSPEDNIELDRLIENEYLGLRNGILDQSAILLSRY 202
Query: 85 GFAELIDFNPIRTTDVQLPAGGT-----FVVAHSLAESLKAITAASNYNNRVVECRLTAI 139
G +D + V L F + + + A+T YN RV EC+ A
Sbjct: 203 GCLTFMDCKTLDHKLVSLQFQQPGGEKPFKILLAFSGLRHALTNKPGYNLRVSECQEAAR 262
Query: 140 VLAIKLGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKI 199
L G E + L +VE E Y A
Sbjct: 263 FLLEASGNDELEPL-----LCNVE------------------------PEVYEAH----- 288
Query: 200 TEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHA-FKDTVSSNLSEEDKLK 258
+ KL ++ A +RA H +SE RV + S NL E
Sbjct: 289 -KCKLEAVLA------------------RRAEHYFSENMRVIKGVEAWASGNLEE----- 324
Query: 259 KLGDLMNDSHHSCSVLYEC 277
G L++ S S YEC
Sbjct: 325 -FGKLISASGLSSIENYEC 342
>gnl|CDD|233017 TIGR00549, mevalon_kin, mevalonate kinase. This model represents
mevalonate kinase, the third step in the mevalonate
pathway of isopentanyl pyrophosphate (IPP) biosynthesis.
IPP is a common intermediate for a number of pathways
including cholesterol biosynthesis. This model covers
enzymes from eukaryotes, archaea and bacteria. The
related enzyme from the same pathway, phosphmevalonate
kinase, serves as an outgroup for this clade. Paracoccus
exhibits two genes within the
phosphomevalonate/mevalonate kinase family, one of which
falls between trusted and noise cutoffs of this model.
The degree of divergence is high, but if the trees
created from this model are correct, the proper names of
these genes have been swapped [Central intermediary
metabolism, Other].
Length = 274
Score = 43.8 bits (104), Expect = 5e-05
Identities = 28/88 (31%), Positives = 39/88 (44%), Gaps = 4/88 (4%)
Query: 26 GSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSG 85
G GL SS A + AL FG E+ K+E+A+L E E+ + G+D A S G
Sbjct: 91 GRGLGSSAAVAVALIRALADYFGSELSKEELAELANEAEKIAHGKPSGIDTATSTS--GG 148
Query: 86 FAELIDFNPIRTTDVQLPAGGTFVVAHS 113
T + L G FV+A +
Sbjct: 149 PVYFEKGEGEFTKLISLD--GYFVIADT 174
>gnl|CDD|224493 COG1577, ERG12, Mevalonate kinase [Lipid metabolism].
Length = 307
Score = 43.8 bits (104), Expect = 5e-05
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 4/88 (4%)
Query: 25 LGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKS 84
+G+GL SS A + AL A FGVE+ +E+A+L + E + ++ G+D A
Sbjct: 94 IGAGLGSSAAVSVAVIKALSAYFGVELSPEELAKLANKVELIVQGKASGIDIATITY--G 151
Query: 85 GFAELIDFNPIRTTDVQLPAGGTFVVAH 112
G +++ GT V+
Sbjct: 152 GLVAFKKGFDFEK--LEIELLGTLVIGD 177
>gnl|CDD|179677 PRK03926, PRK03926, mevalonate kinase; Provisional.
Length = 302
Score = 38.9 bits (91), Expect = 0.002
Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Query: 26 GSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSG 85
GSGL SS A ++ AL G+ + +EIA+L + E + + D +S M G
Sbjct: 87 GSGLGSSAAVTVATIGALNRLLGLGLSLEEIAKLGHKVELLVQGAASPTDTYVSTMG--G 144
Query: 86 FAELIDFNPIRTTDVQLPAGGT 107
F + D + + + G T
Sbjct: 145 FVTIPDRKKLPFPECGIVVGYT 166
>gnl|CDD|226917 COG4542, PduX, Protein involved in propanediol utilization, and
related proteins (includes coumermycin biosynthetic
protein), possible kinase [Secondary metabolites
biosynthesis, transport, and catabolism].
Length = 293
Score = 37.1 bits (86), Expect = 0.008
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 26 GSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECE 64
G G++SSTA + ++ A G E+ + EIA+L E
Sbjct: 95 GKGMASSTADLVATARATARFLGRELRESEIAKLCVSIE 133
>gnl|CDD|236995 PRK11824, PRK11824, polynucleotide phosphorylase/polyadenylase;
Provisional.
Length = 693
Score = 34.3 bits (80), Expect = 0.100
Identities = 17/33 (51%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 25 LGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIA 57
L S SSS A VC S++ALM A GV + K +A
Sbjct: 432 LESNGSSSMASVCGSSLALMDA-GVPI-KAPVA 462
>gnl|CDD|224599 COG1685, COG1685, Archaeal shikimate kinase [Amino acid transport
and metabolism / Coenzyme metabolism].
Length = 278
Score = 33.1 bits (76), Expect = 0.13
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 25 LGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQL 59
+GSGL SS+A + A++ A G E+ EI +L
Sbjct: 81 VGSGLKSSSAASNALVKAVLKALGEEIDDFEILRL 115
>gnl|CDD|206769 cd11364, RNase_PH_PNPase_2, Polyribonucleotide
nucleotidyltransferase, repeat 2. Polyribonucleotide
nucleotidyltransferase (PNPase) is a member of the
RNase_PH family, named after the bacterial Ribonuclease
PH, a 3'-5' exoribonuclease. Structurally, all members
of this family form hexameric rings. In the case of
PNPase the complex is a trimer, since each monomer
contains two tandem copies of the domain. PNPase is
involved in mRNA degradation in a 3'-5' direction and in
quality control of ribosomal RNA precursors, with the
second repeat containing the active site. PNPase is part
of the RNA degradosome complex and binds to the
scaffolding domain of the endoribonuclease RNase E.
Length = 223
Score = 32.1 bits (74), Expect = 0.29
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 25 LGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIA 57
L S SSS A VC ++ALM A GV + K +A
Sbjct: 110 LESNGSSSMASVCGGSLALMDA-GVPI-KAPVA 140
>gnl|CDD|234271 TIGR03591, polynuc_phos, polyribonucleotide nucleotidyltransferase.
Members of this protein family are polyribonucleotide
nucleotidyltransferase, also called polynucleotide
phosphorylase. Some members have been shown also to have
additional functions as guanosine pentaphosphate
synthetase and as poly(A) polymerase (see model
TIGR02696 for an exception clade, within this family)
[Transcription, Degradation of RNA].
Length = 684
Score = 32.1 bits (74), Expect = 0.38
Identities = 12/20 (60%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
Query: 30 SSSTAFVCSSTVALMAAFGV 49
SSS A VC ++ALM A GV
Sbjct: 433 SSSMASVCGGSLALMDA-GV 451
>gnl|CDD|237379 PRK13412, fkp, bifunctional
fucokinase/L-fucose-1-P-guanylyltransferase;
Provisional.
Length = 974
Score = 32.1 bits (73), Expect = 0.45
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Query: 26 GSGLSSSTAFVCSSTV--ALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQA 77
GSGL +S+ + ++TV A+ G+ K EI T EQ + T G DQ
Sbjct: 738 GSGLGTSS--ILAATVLGAISDFCGLAWDKNEICNRTLVLEQLLTTGGGWQDQY 789
>gnl|CDD|224106 COG1185, Pnp, Polyribonucleotide nucleotidyltransferase
(polynucleotide phosphorylase) [Translation, ribosomal
structure and biogenesis].
Length = 692
Score = 31.8 bits (73), Expect = 0.55
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 4/34 (11%)
Query: 25 LGSGLSSSTAFVCSSTVALMAAFGVEVP-KKEIA 57
L S SSS A VC ++ALM A VP K +A
Sbjct: 430 LESNGSSSMASVCGGSLALMDA---GVPIKAPVA 460
>gnl|CDD|234906 PRK01123, PRK01123, shikimate kinase; Provisional.
Length = 282
Score = 31.0 bits (71), Expect = 0.72
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 25 LGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQL 59
L SGL SS+A ++ +A + A G ++ +I +L
Sbjct: 86 LASGLKSSSAAANATVLATLDALGEDLDDLDILRL 120
>gnl|CDD|233637 TIGR01920, Shik_kin_archae, shikimate kinase. This model
represents the shikimate kinase (SK) gene found in
archaea which is only distantly related to homoserine
kinase (thrB) and not atr all to the bacterial SK
enzyme. The SK from M. janaschii has been overexpressed
in E. coli and characterized. SK catalyzes the fifth
step of the biosynthesis of chorismate from
D-erythrose-4-phosphate and phosphoenolpyruvate [Amino
acid biosynthesis, Aromatic amino acid family].
Length = 261
Score = 30.8 bits (70), Expect = 0.80
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 25 LGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIG-TQSGGMDQAISIM 81
GSGL SS+A V + A++ A GVE+ +I +L + G + +G D A +
Sbjct: 75 AGSGLKSSSALVNALVEAVLKAKGVEIDDIDILRLGARLSKDAGLSVTGAFDDAAASY 132
>gnl|CDD|215248 PLN02451, PLN02451, homoserine kinase.
Length = 370
Score = 30.5 bits (69), Expect = 1.1
Identities = 15/40 (37%), Positives = 21/40 (52%)
Query: 25 LGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECE 64
LGSGL SS A ++ VA+ FG + K ++ E E
Sbjct: 145 LGSGLGSSAASAAAAAVAVNELFGSPLGKDDLVLAGLESE 184
>gnl|CDD|215363 PLN02677, PLN02677, mevalonate kinase.
Length = 387
Score = 30.6 bits (69), Expect = 1.1
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 14/69 (20%)
Query: 25 LGSGLSSSTAFVCSSTVALMAAFG-------------VEVPKKEIA-QLTCECEQFIGTQ 70
LGSGL SS AF + + AL+AA ++ E+ + E E+ I +
Sbjct: 140 LGSGLGSSAAFCVALSAALLAASDSISVSTGGNGWSSLDETDLELVNKWAFEGEKIIHGK 199
Query: 71 SGGMDQAIS 79
G+D +S
Sbjct: 200 PSGIDNTVS 208
>gnl|CDD|225325 COG2605, COG2605, Predicted kinase related to galactokinase and
mevalonate kinase [General function prediction only].
Length = 333
Score = 30.4 bits (69), Expect = 1.2
Identities = 25/74 (33%), Positives = 33/74 (44%), Gaps = 12/74 (16%)
Query: 26 GSGLSSSTAFVCSSTVALMAAF----GVEVPKKEIAQLTCECEQFIGTQSGG-MDQAISI 80
GSGL SS+AFV VAL+ A G + E+A+ E E+ GG DQ
Sbjct: 101 GSGLGSSSAFV----VALLNALHAWKGESLGPYELAREAYEIEREDLKIVGGKQDQ---Y 153
Query: 81 MAKSGFAELIDFNP 94
A G ++F
Sbjct: 154 AAAFGGFNFMEFRG 167
>gnl|CDD|221315 pfam11921, DUF3439, Domain of unknown function (DUF3439). This
presumed domain is functionally uncharacterized. This
domain is found in eukaryotes. This domain is typically
between 46 to 94 amino acids in length. This domain is
found associated with pfam01462, pfam00560.
Length = 122
Score = 29.2 bits (65), Expect = 1.3
Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 13/44 (29%)
Query: 278 RYMHDCAF---HIFLHFFVPMNSKILWPFCLFCVPLVLLVLHAS 318
R M+ CA+ +IFLH L VPLV LV HAS
Sbjct: 86 RVMNACAYFPSYIFLHLV----------HGLAAVPLVYLVCHAS 119
>gnl|CDD|240347 PTZ00290, PTZ00290, galactokinase; Provisional.
Length = 468
Score = 30.2 bits (68), Expect = 1.4
Identities = 22/86 (25%), Positives = 34/86 (39%), Gaps = 29/86 (33%)
Query: 25 LGSGLSSSTAFVCSSTVALMAAFGVEV---------------------PKKEIAQLTCEC 63
+G+G+S+S +F VAL+ A V K+E+ +L +
Sbjct: 145 MGAGMSASASF----GVALLNAINTVVTRRYKGCPTSPGRRYSILPPMSKEELIELAKQA 200
Query: 64 E----QFIGTQSGGMDQAISIMAKSG 85
+F G G MDQ IS A+
Sbjct: 201 RRIETEFCGVNVGIMDQFISAFAEED 226
>gnl|CDD|223099 COG0020, UppS, Undecaprenyl pyrophosphate synthase [Lipid
metabolism].
Length = 245
Score = 29.6 bits (67), Expect = 2.1
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Query: 144 KLGMKPQEAISKVKTLS-DVEGLCVAFACKNGS-SDPVFAVKEFLRKEPYTALDIEKITE 201
+L + +EAI K + + + GL + A G + V AV++ L E I E
Sbjct: 114 RLPEEVREAIEKAEEKTKNNTGLTLNIAVNYGGRDEIVDAVRKIAEDVAAGKLSPEDIDE 173
Query: 202 EKLTS 206
E ++S
Sbjct: 174 ELISS 178
>gnl|CDD|234624 PRK00089, era, GTPase Era; Reviewed.
Length = 292
Score = 29.2 bits (67), Expect = 3.0
Identities = 12/29 (41%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 184 EFLRKE-PY-TALDIEKITEEKLTSIFAN 210
L E PY A++IEK E L I A
Sbjct: 201 RLLGDELPYSVAVEIEKFEERGLVRIEAT 229
>gnl|CDD|216923 pfam02190, LON, ATP-dependent protease La (LON) domain. This
domain has been shown to be part of the PUA superfamily.
Length = 191
Score = 28.5 bits (64), Expect = 3.4
Identities = 17/85 (20%), Positives = 34/85 (40%), Gaps = 6/85 (7%)
Query: 180 FAVKEFLRKEPYTALDIEKITEEKLTSIF----ANSSSSLDVLNAAKQYKLHQRAAHVYS 235
F + E ++EPY ++E + EE+L + A ++ + L
Sbjct: 87 FRILELEQEEPYLVAEVEDLPEEELEELLEALEALVKELIEKIKELLPLLLPLELLLKID 146
Query: 236 EAKRVHAFKDTVSSNL--SEEDKLK 258
+ + D ++S L S E+K +
Sbjct: 147 DIEDPGRLADLIASLLPLSPEEKQE 171
>gnl|CDD|162819 TIGR02354, thiF_fam2, thiamine biosynthesis protein ThiF, family 2.
Members of the HesA/MoeB/ThiF family of proteins
(pfam00899) include a number of members encoded in the
midst of thiamine biosynthetic operons. This mix of
known and putative ThiF proteins shows a deep split in
phylogenetic trees, with one the E. coli ThiF and the E.
coli MoeB proteins seemingly more closely related than
E. coli ThiF and Campylobacter (for example) ThiF. This
model represents the divergent clade of putative ThiF
proteins such found in Campylobacter [Biosynthesis of
cofactors, prosthetic groups, and carriers, Thiamine].
Length = 200
Score = 28.3 bits (63), Expect = 3.8
Identities = 23/97 (23%), Positives = 41/97 (42%), Gaps = 10/97 (10%)
Query: 180 FAVKEFLRK-EPYTALDI--EKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAH-VYS 235
A+KE + + PYT ++ EKITEE + F ++ + + A+ + A Y
Sbjct: 77 EALKENISEINPYTEIEAYDEKITEENIDKFFKDADIVCEAFDNAEAKAMLVNAVLEKYK 136
Query: 236 EAKRVHA--FKDTVSSNLSEEDKLKK----LGDLMND 266
+ + A +N + K+ K GD +D
Sbjct: 137 DKYLIAASGLAGYDDANSIKTRKISKHFYLCGDGKSD 173
>gnl|CDD|216392 pfam01255, Prenyltransf, Putative undecaprenyl diphosphate
synthase. Previously known as uncharacterized protein
family UPF0015, a single member of this family has been
identified as an undecaprenyl diphosphate synthase.
Length = 222
Score = 28.3 bits (64), Expect = 4.2
Identities = 13/42 (30%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 165 LCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTS 206
L +A G + V AVK R L E I EE +
Sbjct: 116 LNIAL-NYGGRDEIVDAVKRLARDVADGKLSPEDIDEEVIEK 156
>gnl|CDD|222027 pfam13288, DXPR_C, DXP reductoisomerase C-terminal domain. This is
the C-terminal domain of the
1-deoxy-D-xylulose-5-phosphate reductoisomerase enzyme.
This domain forms a left handed super-helix.
Length = 118
Score = 27.4 bits (62), Expect = 4.4
Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 11/60 (18%)
Query: 170 ACKNGSSDPVF-------AVKEFLRKE-PYTALDIEKITEEKLTSIFANSSSSL-DVLNA 220
A + G + P AV FL + + LDI +I E+ L + SL D+L A
Sbjct: 53 ALRAGGTAPAVLNAANEVAVAAFLEGKIGF--LDIARIVEKVLDAHEPIEPPSLEDILEA 110
>gnl|CDD|223161 COG0083, ThrB, Homoserine kinase [Amino acid transport and
metabolism].
Length = 299
Score = 28.3 bits (64), Expect = 5.0
Identities = 15/40 (37%), Positives = 22/40 (55%)
Query: 25 LGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECE 64
LG GL SS A + ++ A G+ + K+E+ QL E E
Sbjct: 88 LGRGLGSSAASIVAALAAANELAGLPLSKEELLQLALEIE 127
>gnl|CDD|227512 COG5185, HEC1, Protein involved in chromosome segregation,
interacts with SMC proteins [Cell division and
chromosome partitioning].
Length = 622
Score = 28.4 bits (63), Expect = 6.2
Identities = 16/67 (23%), Positives = 28/67 (41%), Gaps = 6/67 (8%)
Query: 201 EEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNL--SEEDKLK 258
E+ + S LN K+YK+H++ HV + + S+L E + K
Sbjct: 557 EQLVQSTEIKLDELKVDLNR-KRYKIHKQVIHVIDITSKFKI---NIQSSLEDLENELGK 612
Query: 259 KLGDLMN 265
+ +L N
Sbjct: 613 VIEELRN 619
>gnl|CDD|131743 TIGR02696, pppGpp_PNP, guanosine pentaphosphate synthetase
I/polynucleotide phosphorylase. Sohlberg, et al present
characterization of two proteins from Streptomyces
coelicolor. The protein in this family was shown to have
poly(A) polymerase activity and may be responsible for
polyadenylating RNA in this species. Reference 2 showed
that a nearly identical plasmid-encoded protein from
Streptomyces antibioticus is a bifunctional enzyme that
acts also as a guanosine pentaphosphate synthetase.
Length = 719
Score = 28.2 bits (63), Expect = 7.5
Identities = 13/25 (52%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Query: 25 LGSGLSSSTAFVCSSTVALMAAFGV 49
LGS S+S VC+ST++L+ A GV
Sbjct: 453 LGSNGSTSMGSVCASTLSLLNA-GV 476
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.134 0.389
Gapped
Lambda K H
0.267 0.0775 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 15,524,860
Number of extensions: 1437129
Number of successful extensions: 1419
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1405
Number of HSP's successfully gapped: 52
Length of query: 321
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 224
Effective length of database: 6,635,264
Effective search space: 1486299136
Effective search space used: 1486299136
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 59 (26.4 bits)