RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 020779
(321 letters)
>d1wuua1 d.14.1.5 (A:2-216) Galactokinase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 215
Score = 73.4 bits (179), Expect = 5e-16
Identities = 29/90 (32%), Positives = 40/90 (44%), Gaps = 1/90 (1%)
Query: 15 FNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGG 73
F+ + LG GLSSS + ++ L AQ+ + E F G G
Sbjct: 124 FSAVVVSSVPLGGGLSSSASLEVATYTFLQQLCPDSGTIAARAQVCQQAEHSFAGMPCGI 183
Query: 74 MDQAISIMAKSGFAELIDFNPIRTTDVQLP 103
MDQ IS+M + G A LID + T+ V L
Sbjct: 184 MDQFISLMGQKGHALLIDCRSLETSLVPLS 213
>d1s4ea1 d.14.1.5 (A:5-180) Galactokinase {Archaeon Pyrococcus
furiosus [TaxId: 2261]}
Length = 176
Score = 68.7 bits (167), Expect = 1e-14
Identities = 20/90 (22%), Positives = 35/90 (38%), Gaps = 1/90 (1%)
Query: 15 FNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGG 73
+ LG+GLSSS +F L + + + + A L + E F+G G
Sbjct: 86 LKGKITGDLPLGAGLSSSASFEVGILEVLNQLYNLNIDPLKKALLAKKAENEFVGVPCGI 145
Query: 74 MDQAISIMAKSGFAELIDFNPIRTTDVQLP 103
+DQ + K +D ++ + P
Sbjct: 146 LDQFAVVFGKKDNVIFLDTQTLQYEYIPFP 175
>d1piea1 d.14.1.5 (A:9-213) Galactokinase {Lactococcus lactis
[TaxId: 1358]}
Length = 205
Score = 66.0 bits (160), Expect = 2e-13
Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 27 SGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSG 85
SGLSSS + V L F + VP+ E+ QL + E +IG SG +DQ +
Sbjct: 126 SGLSSSASLELLVGVVLDDLFNLNVPRLELVQLGQKTENDYIGVNSGILDQFAIGFGEVK 185
Query: 86 FAELIDFNPIRTTDV 100
A +D N ++ V
Sbjct: 186 KAIELDCNTLKYEMV 200
>d1kkha1 d.14.1.5 (A:1-180) Mevalonate kinase {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 180
Score = 48.3 bits (114), Expect = 2e-07
Identities = 16/69 (23%), Positives = 26/69 (37%), Gaps = 3/69 (4%)
Query: 28 GLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFA 87
GL SS + + A+ + E+ EIA+L E+ I ++ D +
Sbjct: 113 GLGSSASITIGTIKAVSGFYNKELKDDEIAKLGYMVEKEIQGKASITDTSTITY---KGI 169
Query: 88 ELIDFNPIR 96
I N R
Sbjct: 170 LEIKNNKFR 178
>d1kvka1 d.14.1.5 (A:1-225) Mevalonate kinase {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 225
Score = 43.3 bits (101), Expect = 1e-05
Identities = 18/82 (21%), Positives = 28/82 (34%), Gaps = 15/82 (18%)
Query: 15 FNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGV---------------EVPKKEIAQL 59
+ + G+GL SS A+ AL+ A E K I +
Sbjct: 129 LDIMVWSELPPGAGLGSSAAYSVCVAAALLTACEEVTNPLKDRGSIGSWPEEDLKSINKW 188
Query: 60 TCECEQFIGTQSGGMDQAISIM 81
E E+ I G+D ++S
Sbjct: 189 AYEGERVIHGNPSGVDNSVSTW 210
>d1k47a1 d.14.1.5 (A:1-194) Phosphomevalonate kinase (PMK)
{Streptococcus pneumoniae r6 [TaxId: 171101]}
Length = 194
Score = 40.2 bits (93), Expect = 1e-04
Identities = 16/72 (22%), Positives = 25/72 (34%)
Query: 9 ITKFQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIG 68
+ F L + GL SS + V AL+A + + V + + +LT G
Sbjct: 84 LRPFSLAIYGKMEREGKKFGLGSSGSVVVLVVKALLALYNLSVDQNLLFKLTSAVLLKRG 143
Query: 69 TQSGGMDQAISI 80
D A
Sbjct: 144 DNGSMGDLACIA 155
>d1piea2 d.58.26.7 (A:214-396) Galactokinase {Lactococcus lactis
[TaxId: 1358]}
Length = 183
Score = 39.7 bits (92), Expect = 2e-04
Identities = 25/99 (25%), Positives = 32/99 (32%), Gaps = 13/99 (13%)
Query: 192 TALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNL 251
T LDI+ + E AN+ D L +RA H E R +
Sbjct: 36 TRLDIQSLGELSNEEFDANTDLIGDET-------LIKRARHAVYENNRTKIAQ-----KA 83
Query: 252 SEEDKLKKLGDLMNDSHHSCSVLYECRY-MHDCAFHIFL 289
L K G+L+N SH S YE D
Sbjct: 84 FVAGNLTKFGELLNASHASLKDDYEVTGLELDTLAETAQ 122
Score = 30.4 bits (68), Expect = 0.16
Identities = 8/41 (19%), Positives = 15/41 (36%), Gaps = 3/41 (7%)
Query: 108 FVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMK 148
V+ ++ S YN R E R + +L ++
Sbjct: 4 IVIMNTNK---PRALTESKYNERFAETREALKRMQTRLDIQ 41
>d1s4ea2 d.58.26.7 (A:181-351) Galactokinase {Archaeon Pyrococcus
furiosus [TaxId: 2261]}
Length = 171
Score = 38.2 bits (88), Expect = 5e-04
Identities = 9/54 (16%), Positives = 23/54 (42%), Gaps = 5/54 (9%)
Query: 226 LHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECRY 279
+ +++ E RV +D + +E ++K+G ++ +H + Y
Sbjct: 54 HRKFFSYIVRENARVLEVRDAL-----KEGDIEKVGKILTTAHWDLAENYRVSC 102
>d1wuua2 d.58.26.7 (A:217-392) Galactokinase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 176
Score = 29.7 bits (66), Expect = 0.27
Identities = 15/63 (23%), Positives = 22/63 (34%), Gaps = 5/63 (7%)
Query: 215 LDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVL 274
L+ + +RA HV E +R + + G LM +SH S
Sbjct: 47 LEAARDLVSKEGFRRARHVVGEIRRTAQAAAAL-----RRGDYRAFGRLMVESHRSLRDD 101
Query: 275 YEC 277
YE
Sbjct: 102 YEV 104
>d1kvka2 d.58.26.3 (A:226-394) Mevalonate kinase {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 169
Score = 29.6 bits (66), Expect = 0.27
Identities = 9/55 (16%), Positives = 17/55 (30%), Gaps = 4/55 (7%)
Query: 228 QRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECRYMHD 282
+ E +RV ++ L +LM+ + H + L D
Sbjct: 41 TSIDAISLECERVLGEMAA----APVPEQYLVLEELMDMNQHHLNALGVGHASLD 91
>d1muca1 c.1.11.2 (A:131-372) Muconate-lactonizing enzyme
{Pseudomonas putida [TaxId: 303]}
Length = 242
Score = 27.2 bits (59), Expect = 2.4
Identities = 10/86 (11%), Positives = 20/86 (23%), Gaps = 10/86 (11%)
Query: 222 KQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECRYMH 281
+ +KL A V + K V K + + + D + R
Sbjct: 34 RVFKLKIGANPVEQDLKHVVTIKRELGDSA----------SVRVDVNQYWDESQAIRACQ 83
Query: 282 DCAFHIFLHFFVPMNSKILWPFCLFC 307
+ P++
Sbjct: 84 VLGDNGIDLIEQPISRINRGGQVRLN 109
>d1fi4a1 d.14.1.5 (A:3-190) Mevalonate 5-diphosphate decarboxylase
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 188
Score = 26.9 bits (59), Expect = 2.5
Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 17 HINS-LFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLT 60
HI S F +GL+SS A + A+ + + EI+++
Sbjct: 103 HIVSENNFPTAAGLASSAAGFAALVSAIAKLYQLPQSTSEISRIA 147
>d1wi9a_ a.4.5.47 (A:) Hypothetical protein C20orf116 homolog {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 72
Score = 24.6 bits (54), Expect = 4.4
Identities = 7/19 (36%), Positives = 16/19 (84%)
Query: 141 LAIKLGMKPQEAISKVKTL 159
LA ++G++ Q+AI++++ L
Sbjct: 27 LAFQMGLRTQDAINRIQDL 45
>d2je6b1 d.14.1.4 (B:8-155) Exosome complex exonuclease 1, ECX1
{Sulfolobus solfataricus [TaxId: 2287]}
Length = 148
Score = 25.5 bits (55), Expect = 5.7
Identities = 5/22 (22%), Positives = 11/22 (50%)
Query: 25 LGSGLSSSTAFVCSSTVALMAA 46
L + S + ++++AL A
Sbjct: 125 LQADAGSRLVSLMAASLALADA 146
>d2ba0d1 d.14.1.4 (D:10-153) Exosome complex exonuclease 1, ECX1
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 144
Score = 25.6 bits (55), Expect = 6.6
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 25 LGSGLSSSTAFVCSSTVALMAA 46
L + S TA + +++VAL+ A
Sbjct: 121 LQADAGSRTACLNAASVALVDA 142
>d1dgna_ a.77.1.3 (A:) Iceberg {Human (Homo sapiens) [TaxId: 9606]}
Length = 89
Score = 24.4 bits (53), Expect = 7.1
Identities = 5/39 (12%), Positives = 13/39 (33%)
Query: 251 LSEEDKLKKLGDLMNDSHHSCSVLYECRYMHDCAFHIFL 289
+S+ED K + + ++ + F+
Sbjct: 34 ISQEDMNKVRDENDTVMDKARVLIDLVTGKGPKSCCKFI 72
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.134 0.389
Gapped
Lambda K H
0.267 0.0499 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,110,187
Number of extensions: 48278
Number of successful extensions: 141
Number of sequences better than 10.0: 1
Number of HSP's gapped: 141
Number of HSP's successfully gapped: 23
Length of query: 321
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 236
Effective length of database: 1,240,546
Effective search space: 292768856
Effective search space used: 292768856
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (24.7 bits)