Query 020780
Match_columns 321
No_of_seqs 177 out of 1262
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 08:04:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020780.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020780hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1u7g_A Probable ammonium trans 100.0 6.4E-84 2.2E-88 629.8 22.6 283 20-320 4-287 (385)
2 2b2h_A AMT-1, ammonium transpo 100.0 1.3E-82 4.6E-87 622.6 23.1 275 21-320 1-275 (399)
3 3b9w_A Ammonium transporter fa 100.0 7.2E-59 2.5E-63 455.2 18.9 245 30-320 19-265 (407)
4 3hd6_A Ammonium transporter RH 100.0 9.7E-49 3.3E-53 390.3 20.3 187 127-320 122-314 (490)
5 3b9w_A Ammonium transporter fa 72.1 32 0.0011 33.4 11.4 144 21-217 172-316 (407)
6 2b2h_A AMT-1, ammonium transpo 62.6 1.1E+02 0.0038 29.4 13.1 137 21-216 182-320 (399)
7 1u7g_A Probable ammonium trans 49.7 1.8E+02 0.006 27.8 12.0 140 20-217 192-334 (385)
8 3hd6_A Ammonium transporter RH 38.5 1.2E+02 0.004 30.1 9.0 142 22-216 219-364 (490)
9 2jaf_A Halorhodopsin, HR; chro 7.9 7.6E+02 0.026 22.1 6.5 51 23-77 29-79 (274)
10 1btq_A BAND 3 anion transport 5.8 2.5E+02 0.0087 16.4 1.4 20 136-155 7-26 (26)
No 1
>1u7g_A Probable ammonium transporter; right handed helical bundle, transmembrane helices, ammonia membrane protein, RH protein, transport protein; HET: MSE BOG; 1.40A {Escherichia coli} SCOP: f.44.1.1 PDB: 1u77_A* 1u7c_A* 1xqf_A 1xqe_A 2ns1_A* 2nop_A 2nmr_A 3c1g_A 3c1i_A* 3c1h_A* 2now_A 2npe_A 2npc_A 2npd_A 2npg_A 2npj_A 2nuu_A* 3c1j_A 2npk_A
Probab=100.00 E-value=6.4e-84 Score=629.82 Aligned_cols=283 Identities=34% Similarity=0.588 Sum_probs=263.7
Q ss_pred ccccchHHHHHHHHHHHHHHHH-HHHHHHHcCCccchhHHHHHHHHHHHHHHHHHHHhhhheeeeecCCCCCCCCCCCcc
Q 020780 20 WLNKGDSAWQMTASTLVGIQSM-PGLLIIYASIVKKKWAVNSAFMVLYAFAAVLICWVLVCYRMAFGDQLLPFWGKGAPA 98 (321)
Q Consensus 20 ~~~~~d~~w~l~~~~lV~~~m~-~GfalleaG~vr~kn~~~~l~~~~~~~~v~~i~~~~~Gy~lafG~~~~~fiG~~~~~ 98 (321)
.+|+.|+.|+|+|++|| ++|| |||+|+|+|++|+||++|+++||++++++++++||++||+++||++ ++|||+.+++
T Consensus 4 ~~~~~d~~w~l~~~~LV-~~M~~~Gfa~~~~G~vR~KN~~n~l~k~~~~~~i~~i~w~~~Gy~lafg~~-~~~iG~~~~~ 81 (385)
T 1u7g_A 4 VADKADNAFMMICTALV-LFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWVVYGYSLASGEG-NNFFGNINWL 81 (385)
T ss_dssp CCCHHHHHHHHHHHHHH-HHHHTTHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHSSC-SSSCCCSTTG
T ss_pred ccccccHHHHHHHHHHH-HHHHHHHHHHHhcccccHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CccccCcchh
Confidence 46789999999999999 9999 9999999999999999999999999999999999999999999987 7899986542
Q ss_pred hhhhhhccCCCCCCCccccCCccccCCcccchhHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhhhhcccc
Q 020780 99 LGQKYLVGRARVPESTHEVDGKTVTTEPFYAMATLVYFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAF 178 (321)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~lfq~~Fa~~a~~I~sGavaeR~~~~~~~i~~~l~~~~vYp~~ah 178 (321)
+ +.+.+ ++ +.++++|+..+++||++||+++++|++||++||+|+.+|++|+++|++++|||++|
T Consensus 82 ~----l~~~~--~~----------~~~~~ip~~~~~~FQ~~Faa~t~~IvsGAvaeR~kf~a~lif~~l~~~~vY~~~ah 145 (385)
T 1u7g_A 82 M----LKNIE--LT----------AVMGSIYQYIHVAFQGSFACITVGLIVGALAERIRFPAVLIFVVVWLTLSYIPIAH 145 (385)
T ss_dssp G----GTTCC--TT----------CEETTEEHHHHHHHHHHHHHHHHHHHHHHHGGGBCHHHHHHHHHHHHHHTHHHHHH
T ss_pred h----ccCCC--Cc----------ccccCcchHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHhhhhhh
Confidence 1 11111 00 01124899999999999999999999999999999999999999999999999999
Q ss_pred ceecchhhhccCceeecCceeehhhhhHHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHHHHHHHhhhhhcCcccccccc
Q 020780 179 SLWGGGFLYQWGVIDYSGGYVIHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVLLMLAGAGLLWMGWSGFNGGAPYAAHI 258 (321)
Q Consensus 179 wvW~~GwL~~lG~~DfaGs~vVH~~gG~~gL~~a~~lgpR~~~~~~~~~~~n~~~~~lGt~lLw~gW~gFN~gs~~~~~~ 258 (321)
|+|++|||.++|++|||||++||++||++||+++++||||++|++++++|||++++++|+++||+||||||+||++..++
T Consensus 146 wvW~~GwL~~lG~~DFAGs~vVH~~gG~aaL~~a~~LG~R~g~~~~~~~~hn~~~~~lGt~lLW~GWfGFN~GS~l~~~~ 225 (385)
T 1u7g_A 146 MVWGGGLLASHGALDFAGGTVVHINAAIAGLVGAYLIGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSAGTANE 225 (385)
T ss_dssp HHHSSCHHHHHTCCCSSCTTTTHHHHHHHHHHHHHHSCCCCCTTCSSCCGGGHHHHHHHHHHHHHHHHHHHHGGGSSSSH
T ss_pred eeEcchhhhhcceeeccCCeEEEecchHHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhhhcchhhhhccc
Confidence 99999999999999999999999999999999999999999988889999999999999999999999999999998888
Q ss_pred chhHHHHHhHHHHHHHHHHHHHHHHHHhCCCcHHHhHHHhhhccccccCCCCCcccchheee
Q 020780 259 ASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGMHQRRVSIFM 320 (321)
Q Consensus 259 ~~~~a~~NT~la~a~g~lt~~~~~~~~~~k~~~~~~~nG~laGlVaita~~~~v~p~~A~ii 320 (321)
+++++++||++|+++|+++|++++++++||+|+.+++||+|||||+|||+|++++||+|++|
T Consensus 226 ~a~~a~~nT~lAaaag~l~~~~~~~~~~gk~~~~~~~nG~lAGLVaITa~~~~v~p~~A~ii 287 (385)
T 1u7g_A 226 IAALAFVNTVVATAAAILGWIFGEWALRGLPSLLGACSGAIAGLVGVTPACGYIGVGGALII 287 (385)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHTTTTTTSCHHHHHHH
T ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhhhhhccCCCCCCHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999876
No 2
>2b2h_A AMT-1, ammonium transporter; membrane protein, transport protein; 1.54A {Archaeoglobus fulgidus} PDB: 2b2f_A 2b2i_A 2b2j_A
Probab=100.00 E-value=1.3e-82 Score=622.58 Aligned_cols=275 Identities=35% Similarity=0.671 Sum_probs=257.8
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHHHHHHHhhhheeeeecCCCCCCCCCCCcchh
Q 020780 21 LNKGDSAWQMTASTLVGIQSMPGLLIIYASIVKKKWAVNSAFMVLYAFAAVLICWVLVCYRMAFGDQLLPFWGKGAPALG 100 (321)
Q Consensus 21 ~~~~d~~w~l~~~~lV~~~m~~GfalleaG~vr~kn~~~~l~~~~~~~~v~~i~~~~~Gy~lafG~~~~~fiG~~~~~~~ 100 (321)
+|+.|+.|+|+|++|| ++|||||+|+|+|++|+||++|+++||++++++++++||++||+++||++.++|||+.+++
T Consensus 1 ~~~~d~~w~l~~~~LV-~~M~~Gfa~~~~G~vR~KN~~n~l~k~~~~~~i~~i~w~~~Gy~lafg~~~~~~iG~~~~~-- 77 (399)
T 2b2h_A 1 MSDGNVAWILASTALV-MLMVPGVGFFYAGMVRRKNAVNMIALSFISLIITVLLWIFYGYSVSFGNDISGIIGGLNYA-- 77 (399)
T ss_dssp CCHHHHHHHHHHHHHH-HHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHTHHHHHHSSEETTTEECSTTG--
T ss_pred CCcccHHHHHHHHHHH-HHHHHHHHHHhcccccHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCCchHh--
Confidence 4678999999999999 9999999999999999999999999999999999999999999999998667899985432
Q ss_pred hhhhccCCCCCCCccccCCccccCCcccchhHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhhhhccccce
Q 020780 101 QKYLVGRARVPESTHEVDGKTVTTEPFYAMATLVYFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSL 180 (321)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~lfq~~Fa~~a~~I~sGavaeR~~~~~~~i~~~l~~~~vYp~~ahwv 180 (321)
++.+ . + .+...+++||++||+++++|++||++||+|+.+|++|+++|++++|||++||+
T Consensus 78 --~~~~---~-------~---------~~~~~~~~Fq~~Faa~t~~IvsGAvaeR~kf~a~lif~~l~~~~vY~~~ahwv 136 (399)
T 2b2h_A 78 --LLSG---V-------K---------GEDLLFMMYQMMFAAVTIAILTSAIAERAKVSSFILLSALWLTFVYAPFAHWL 136 (399)
T ss_dssp --GGTT---C-------C---------THHHHHHHHHHHHHHHHHHHHGGGGTTTBCHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred --hccC---C-------C---------CCchhHHHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHHHHHHHhhhhhhhe
Confidence 1101 0 0 01267999999999999999999999999999999999999999999999999
Q ss_pred ecchhhhccCceeecCceeehhhhhHHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHHHHHHHhhhhhcCccccccccch
Q 020780 181 WGGGFLYQWGVIDYSGGYVIHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVLLMLAGAGLLWMGWSGFNGGAPYAAHIAS 260 (321)
Q Consensus 181 W~~GwL~~lG~~DfaGs~vVH~~gG~~gL~~a~~lgpR~~~~~~~~~~~n~~~~~lGt~lLw~gW~gFN~gs~~~~~~~~ 260 (321)
|++|||.++|++|||||++||++||++||+++++||||++|++++++|||++++++|+++||+||||||+||++..+.++
T Consensus 137 W~~GwL~~lG~~DFAGs~vVH~~gG~~aL~~a~~LG~R~g~~~~~~~~hn~~~~~lG~~lLW~GWfGFN~GS~l~~~~~a 216 (399)
T 2b2h_A 137 WGGGWLAKLGALDFAGGMVVHISSGFAALAVAMTIGKRAGFEEYSIEPHSIPLTLIGAALLWFGWFGFNGGSALAANDVA 216 (399)
T ss_dssp HSSCHHHHTTCCCSSCTTTTHHHHHHHHHHHHHHHCCCTTTTTSCCCCSCHHHHHHHHHHHHHHHHHHHHGGGSSSSHHH
T ss_pred ECchhHHhcCCccccCCeEEEechhHHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhcHHhhccccchh
Confidence 99999999999999999999999999999999999999998888999999999999999999999999999999888889
Q ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHhCCCcHHHhHHHhhhccccccCCCCCcccchheee
Q 020780 261 SIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGMHQRRVSIFM 320 (321)
Q Consensus 261 ~~a~~NT~la~a~g~lt~~~~~~~~~~k~~~~~~~nG~laGlVaita~~~~v~p~~A~ii 320 (321)
+++++||++|+++|+++|+++++++ ||+|+.+++||+|||||||||+|++++||+|++|
T Consensus 217 ~~a~~nT~lAaaag~l~~~~~~~~~-gk~~~~~~~nG~lAGLVaITa~~~~v~p~~A~ii 275 (399)
T 2b2h_A 217 INAVVVTNTSAAVAGFVWMVIGWIK-GKPGSLGIVSGAIAGLAAITPAAGFVDVKGAIVI 275 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHHHTTTTTTCCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHhhhhhccccccCCHHHHHHH
Confidence 9999999999999999999999999 9999999999999999999999999999999876
No 3
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transpo protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A*
Probab=100.00 E-value=7.2e-59 Score=455.22 Aligned_cols=245 Identities=15% Similarity=0.216 Sum_probs=216.1
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHHHHHHHhhhheeeeecCCCCCCCCCCCcchhhhhhccCCC
Q 020780 30 MTASTLVGIQSMPGLLIIYASIVKKKWAVNSAFMVLYAFAAVLICWVLVCYRMAFGDQLLPFWGKGAPALGQKYLVGRAR 109 (321)
Q Consensus 30 l~~~~lV~~~m~~GfalleaG~vr~kn~~~~l~~~~~~~~v~~i~~~~~Gy~lafG~~~~~fiG~~~~~~~~~~~~~~~~ 109 (321)
..-...| ++.+||+++++++ |||..+.+.+|++..+ ..++|++++|. ++|..
T Consensus 19 ~f~dv~v--Mi~iGfGFL~~~L--rk~~~s~v~~n~l~~a-~~~QW~~l~~~-------~Gf~~---------------- 70 (407)
T 3b9w_A 19 YSINILA--MLLVGFGFLMVFV--RRYGFSATTGTYLVVA-TGLPLYILLRA-------NGIFG---------------- 70 (407)
T ss_dssp HHHHHHH--HHHHHHHHHGGGS--TTCHHHHHHHHHHHHH-HHHHHHHHHHH-------TTTTS----------------
T ss_pred hhhhHHH--HHHHHHHHHHHHH--HHHHHHHHHHHHHHHH-HHHHHHHHHhc-------ccccC----------------
Confidence 3344445 3556999999998 9999999999999854 78899999981 12211
Q ss_pred CCCCccccCCccccCCcccchhHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhhhhccccceecchhhhcc
Q 020780 110 VPESTHEVDGKTVTTEPFYAMATLVYFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLWGGGFLYQW 189 (321)
Q Consensus 110 ~~~~~~~~~g~~~~~~~~~p~~~~~lfq~~Fa~~a~~I~sGavaeR~~~~~~~i~~~l~~~~vYp~~ahwvW~~GwL~~l 189 (321)
++ ++|..++++||++||+++++|++||++||+|+.+|++|++ |.+++|||.+||+|++||+...
T Consensus 71 --------~g-------~ip~~~~~~fq~~Faa~t~~IvsGAvaeR~kf~~~li~~~-~~~~vY~~~~~wvw~gG~~~~~ 134 (407)
T 3b9w_A 71 --------HA-------LTPHSVDAVIYAEFAVATGLIAMGAVLGRLRVFQYALLAL-FIVPVYLLNEWLVLDNASGLTE 134 (407)
T ss_dssp --------SC-------CCSSSHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHH-HHHHHHHHHHHHHTTCTTSSCT
T ss_pred --------CC-------cchHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHH-HHHHhccceeEEEeCCcchhhc
Confidence 01 2677789999999999999999999999999999999995 5688999999999998998777
Q ss_pred CceeecCceeehhhhhHHHHHHHHHHcCCCCCC-CCCCCCCcHHHHHHHHHHHHHhhhhhcCccccccccchhHHHHHhH
Q 020780 190 GVIDYSGGYVIHVSSGIAGLTAAYWVGPRLKSD-KERFPPNNVLLMLAGAGLLWMGWSGFNGGAPYAAHIASSIAILNTN 268 (321)
Q Consensus 190 G~~DfaGs~vVH~~gG~~gL~~a~~lgpR~~~~-~~~~~~~n~~~~~lGt~lLw~gW~gFN~gs~~~~~~~~~~a~~NT~ 268 (321)
|++|||||++||++||++||+++++||||++|+ +++++|||++++++|+++||+||||||+| +..++++.++++||+
T Consensus 135 G~~DfAGs~vVH~~gG~~aLa~a~~LG~R~~~~~~~~~~~hn~~~~~lGt~lLW~GWfGFN~G--l~~~~~~~~a~~NT~ 212 (407)
T 3b9w_A 135 GFQDSAGSIAIHAFGAYFGLGVSIALTTAAQRAQPIESDATSDRFSMLGSMVLWLFWPSFATA--IVPFEQMPQTIVNTL 212 (407)
T ss_dssp TCCCTTCTTTTHHHHHHHHHHHHHHHCCHHHHTSCCCCCHHHHHHHHHHHHHHHHHHHHHHHT--TSCGGGHHHHHHHHH
T ss_pred ceeeccCceEEEeCchHHHHHHHHHhcCccccCCCCcCCCCCHHHHHHHHHHHHHHHHhhhhh--hccchhhHHHHHHhH
Confidence 999999999999999999999999999997652 22489999999999999999999999999 445778999999999
Q ss_pred HHHHHHHHHHHHHHHH-HhCCCcHHHhHHHhhhccccccCCCCCcccchheee
Q 020780 269 VAAATSLLVWTCLDVI-FFGKPSVIGAVQGMMTGLVCITPGAGMHQRRVSIFM 320 (321)
Q Consensus 269 la~a~g~lt~~~~~~~-~~~k~~~~~~~nG~laGlVaita~~~~v~p~~A~ii 320 (321)
+|+++|+++|++++++ ++||+|+.+++||+|||||||||+|++++||+|++|
T Consensus 213 lAaaag~l~~~~~~~~~~~gK~~~~~~~nG~LAGLVAITa~~~~v~p~~A~iI 265 (407)
T 3b9w_A 213 LALCGATLATYFLSALFHKGKASIVDMANAALAGGVAIGSVCNIVGPVGAFVI 265 (407)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCCCHHHHHHHTTHHHHHHTTTTTTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCHHHHHHhhhhhhheeccCCCCCCHHHHHHH
Confidence 9999999999999998 889999999999999999999999999999999876
No 4
>3hd6_A Ammonium transporter RH type C; ammonia, channel, rhesus, glycoprotein, membran structural genomics, PSI-2, protein structure initiative; HET: BOG; 2.10A {Homo sapiens}
Probab=100.00 E-value=9.7e-49 Score=390.27 Aligned_cols=187 Identities=20% Similarity=0.271 Sum_probs=172.3
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhhhhccccceecchhhhccCceeecCceeehhhhhH
Q 020780 127 FYAMATLVYFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLWGGGFLYQWGVIDYSGGYVIHVSSGI 206 (321)
Q Consensus 127 ~~p~~~~~lfq~~Fa~~a~~I~sGavaeR~~~~~~~i~~~l~~~~vYp~~ahwvW~~GwL~~lG~~DfaGs~vVH~~gG~ 206 (321)
++|..++++||++||+++++|++||++||+|+.+|++|+++| +++||+. ||+ ||+++|++|||||++||++||+
T Consensus 122 ~ip~~~~~~fq~~Faa~t~~IvsGAvaeR~k~~~~li~~~l~-~~vY~~~-~w~----~L~~lG~~DFAGs~vVH~~gG~ 195 (490)
T 3hd6_A 122 YIVVGVENLINADFCVASVCVAFGAVLGKVSPIQLLIMTFFQ-VTLFAVN-EFI----LLNLLKVKDAGGSMTIHTFGAY 195 (490)
T ss_dssp BEECCHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHH-HHHHHHH-HHH----HHTTSCCCCTTCTTTTHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH-HHHHhhh-HHH----HHhccCceeecCceeeeHHHHH
Confidence 378889999999999999999999999999999999999986 7799984 665 7889999999999999999999
Q ss_pred HHHHHHHHHcCCC---CCCCCCCCCCcHHHHHHHHHHHHHhhhhhcCccccccccchhHHHHHhHHHHHHHHHHHHHHHH
Q 020780 207 AGLTAAYWVGPRL---KSDKERFPPNNVLLMLAGAGLLWMGWSGFNGGAPYAAHIASSIAILNTNVAAATSLLVWTCLDV 283 (321)
Q Consensus 207 ~gL~~a~~lgpR~---~~~~~~~~~~n~~~~~lGt~lLw~gW~gFN~gs~~~~~~~~~~a~~NT~la~a~g~lt~~~~~~ 283 (321)
+||+++++||||+ ++++++++|||++++++|+++||+||||||+|++.. +..+.++++||++|+++|+++|+++++
T Consensus 196 aaLa~a~vLG~R~~~~~~~~~~~~~hn~~~a~LGt~lLW~GWfGFN~gs~~~-~~~~~~a~~NT~lAaAag~lt~~~~s~ 274 (490)
T 3hd6_A 196 FGLTVTRILYRRNLEQSKERQNSVYQSDLFAMIGTLFLWMYWPSFNSAISYH-GDSQHRAAINTYCSLAACVLTSVAISS 274 (490)
T ss_dssp HHHHHHHHTCCTTGGGGTTTSSCCHHHHHHHHHHHHHHHHHHHHHTTTTCSS-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCcccccCCCCCCCCCCCHHHHHHHHHHHHHHHHhhchhhhcc-chHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999993 445567889999999999999999999999998753 567889999999999999999999998
Q ss_pred H--HhCCCcHHHhHHHhhhccccccCCCC-Ccccchheee
Q 020780 284 I--FFGKPSVIGAVQGMMTGLVCITPGAG-MHQRRVSIFM 320 (321)
Q Consensus 284 ~--~~~k~~~~~~~nG~laGlVaita~~~-~v~p~~A~ii 320 (321)
+ ++||+|+.+++||+||||||||++|+ +++||+|++|
T Consensus 275 l~~~~gK~s~~~~~nG~LAGLVAIT~~a~~~v~P~~AliI 314 (490)
T 3hd6_A 275 ALHKKGKLDMVHIQNATLAGGVAVGTAAEMMLMPYGALII 314 (490)
T ss_dssp HTSTTCCCCHHHHHHGGGHHHHHTTTTTTTCSCHHHHHHH
T ss_pred HHHhcCCCCHHHhhhceeeeEEEEccCcccccCHHHHHHH
Confidence 7 68999999999999999999999999 6999999876
No 5
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transpo protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A*
Probab=72.10 E-value=32 Score=33.38 Aligned_cols=144 Identities=17% Similarity=0.074 Sum_probs=88.2
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHHHHHHHhhhheeeeecCCCCCCCCCCCcchh
Q 020780 21 LNKGDSAWQMTASTLVGIQSMPGLLIIYASIVKKKWAVNSAFMVLYAFAAVLICWVLVCYRMAFGDQLLPFWGKGAPALG 100 (321)
Q Consensus 21 ~~~~d~~w~l~~~~lV~~~m~~GfalleaG~vr~kn~~~~l~~~~~~~~v~~i~~~~~Gy~lafG~~~~~fiG~~~~~~~ 100 (321)
+..-|..+.++-+.+. ++ |-.-|.+|+.....+.++++...++.+.+.+.|.++-+-+-.|+ .+.
T Consensus 172 ~~~hn~~~~~lGt~lL-W~---GWfGFN~Gl~~~~~~~~a~~NT~lAaaag~l~~~~~~~~~~~gK--------~~~--- 236 (407)
T 3b9w_A 172 SDATSDRFSMLGSMVL-WL---FWPSFATAIVPFEQMPQTIVNTLLALCGATLATYFLSALFHKGK--------ASI--- 236 (407)
T ss_dssp CCHHHHHHHHHHHHHH-HH---HHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC--------CCH---
T ss_pred CCCCCHHHHHHHHHHH-HH---HHHhhhhhhccchhhHHHHHHhHHHHHHHHHHHHHHHHHHhCCC--------CCH---
Confidence 4456777778877776 65 44556777655555667777778999999999987755332121 100
Q ss_pred hhhhccCCCCCCCccccCCccccCCcccchhHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhhhhccccce
Q 020780 101 QKYLVGRARVPESTHEVDGKTVTTEPFYAMATLVYFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSL 180 (321)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~lfq~~Fa~~a~~I~sGavaeR~~~~~~~i~~~l~~~~vYp~~ahwv 180 (321)
....=.+.+-.....+-++-.++..-++..++ +++++.....+.
T Consensus 237 -----------------------------------~~~~nG~LAGLVAITa~~~~v~p~~A~iIG~i-aG~i~~~~~~~l 280 (407)
T 3b9w_A 237 -----------------------------------VDMANAALAGGVAIGSVCNIVGPVGAFVIGLL-GGAISVVGFVFI 280 (407)
T ss_dssp -----------------------------------HHHHHHTTHHHHHHTTTTTTSCHHHHHHHHHH-HHHHHHHHHHTH
T ss_pred -----------------------------------HHHHHhhhhhhheeccCCCCCCHHHHHHHHHH-HHHHHHHHHHHH
Confidence 00011222222333333455777777777776 454443322110
Q ss_pred ecchhh-hccCceeecCceeehhhhhHHHHHHHHHHcC
Q 020780 181 WGGGFL-YQWGVIDYSGGYVIHVSSGIAGLTAAYWVGP 217 (321)
Q Consensus 181 W~~GwL-~~lG~~DfaGs~vVH~~gG~~gL~~a~~lgp 217 (321)
.-+| ++++..|--|.-.||.++|..|...+-+...
T Consensus 281 --~~~l~~~l~iDD~l~a~~vHgv~Gi~G~l~~glfa~ 316 (407)
T 3b9w_A 281 --QPMLESKAKTIDTCGVHNLHGLPGLLGGFSAILIVP 316 (407)
T ss_dssp --HHHHHHHSCCCCTTCHHHHTTHHHHHHHHHHHHHST
T ss_pred --HHHHHhcCCCCCCCCCeecchHHHHHHHHHHHHHcc
Confidence 1123 3589999999999999999999988877654
No 6
>2b2h_A AMT-1, ammonium transporter; membrane protein, transport protein; 1.54A {Archaeoglobus fulgidus} PDB: 2b2f_A 2b2i_A 2b2j_A
Probab=62.63 E-value=1.1e+02 Score=29.36 Aligned_cols=137 Identities=12% Similarity=0.136 Sum_probs=87.0
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHcCCccchh--HHHHHHHHHHHHHHHHHHHhhhheeeeecCCCCCCCCCCCcc
Q 020780 21 LNKGDSAWQMTASTLVGIQSMPGLLIIYASIVKKKW--AVNSAFMVLYAFAAVLICWVLVCYRMAFGDQLLPFWGKGAPA 98 (321)
Q Consensus 21 ~~~~d~~w~l~~~~lV~~~m~~GfalleaG~vr~kn--~~~~l~~~~~~~~v~~i~~~~~Gy~lafG~~~~~fiG~~~~~ 98 (321)
+..-|..+.++.+.+. ++--+| |.+|+.-..| +..+++...++.+.+.+.|.++-|-. |+. +
T Consensus 182 ~~~hn~~~~~lG~~lL-W~GWfG---FN~GS~l~~~~~a~~a~~nT~lAaaag~l~~~~~~~~~--gk~--------~-- 245 (399)
T 2b2h_A 182 IEPHSIPLTLIGAALL-WFGWFG---FNGGSALAANDVAINAVVVTNTSAAVAGFVWMVIGWIK--GKP--------G-- 245 (399)
T ss_dssp CCCSCHHHHHHHHHHH-HHHHHH---HHHGGGSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH--SCC--------C--
T ss_pred CCCCCHHHHHHHHHHH-HHHHHh---hcHHhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHH--cCC--------C--
Confidence 4466778888888777 655555 5666554433 45566677888889999998775543 221 0
Q ss_pred hhhhhhccCCCCCCCccccCCccccCCcccchhHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhhhhcccc
Q 020780 99 LGQKYLVGRARVPESTHEVDGKTVTTEPFYAMATLVYFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAF 178 (321)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~lfq~~Fa~~a~~I~sGavaeR~~~~~~~i~~~l~~~~vYp~~ah 178 (321)
. ....+ .+.+-.....+-++-.++..-++..++ +++++....
T Consensus 246 -----------------------------~----~~~~n---G~lAGLVaITa~~~~v~p~~A~iiG~i-ag~i~~~~~- 287 (399)
T 2b2h_A 246 -----------------------------S----LGIVS---GAIAGLAAITPAAGFVDVKGAIVIGLV-AGIVCYLAM- 287 (399)
T ss_dssp -----------------------------H----HHHHH---HHHHHHHHHTTTTTTCCHHHHHHHHHH-HHHHHHHHH-
T ss_pred -----------------------------H----HHHHH---HHHHhhhhhccccccCCHHHHHHHHHH-HHHHHHHHH-
Confidence 0 00111 222223333444466777777777776 444443322
Q ss_pred ceecchhhhccCceeecCceeehhhhhHHHHHHHHHHc
Q 020780 179 SLWGGGFLYQWGVIDYSGGYVIHVSSGIAGLTAAYWVG 216 (321)
Q Consensus 179 wvW~~GwL~~lG~~DfaGs~vVH~~gG~~gL~~a~~lg 216 (321)
-...+++..|--|.-.||..+|..|..++-+..
T Consensus 288 -----~l~~kl~iDD~l~a~~vHgv~Gi~G~l~~glfa 320 (399)
T 2b2h_A 288 -----DFRIKKKIDESLDAWAIHGIGGLWGSVAVGILA 320 (399)
T ss_dssp -----HHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred -----HHHHHcCCCCCCCceeccchhhHHHHHHHHHHc
Confidence 134679999999999999999999988886664
No 7
>1u7g_A Probable ammonium transporter; right handed helical bundle, transmembrane helices, ammonia membrane protein, RH protein, transport protein; HET: MSE BOG; 1.40A {Escherichia coli} SCOP: f.44.1.1 PDB: 1u77_A* 1u7c_A* 1xqf_A 1xqe_A 2ns1_A* 2nop_A 2nmr_A 3c1g_A 3c1i_A* 3c1h_A* 2now_A 2npe_A 2npc_A 2npd_A 2npg_A 2npj_A 2nuu_A* 3c1j_A 2npk_A
Probab=49.66 E-value=1.8e+02 Score=27.83 Aligned_cols=140 Identities=16% Similarity=0.117 Sum_probs=88.1
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHcCCccchh--HHHHHHHHHHHHHHHHHHHhhhheeeeecCCCCCCCCCCCc
Q 020780 20 WLNKGDSAWQMTASTLVGIQSMPGLLIIYASIVKKKW--AVNSAFMVLYAFAAVLICWVLVCYRMAFGDQLLPFWGKGAP 97 (321)
Q Consensus 20 ~~~~~d~~w~l~~~~lV~~~m~~GfalleaG~vr~kn--~~~~l~~~~~~~~v~~i~~~~~Gy~lafG~~~~~fiG~~~~ 97 (321)
.+..-|..+.++-+.+. ++--+| |.+|+.-..| +..+++...++.+.+.+.|.++-|-. .|+
T Consensus 192 ~~~~hn~~~~~lGt~lL-W~GWfG---FN~GS~l~~~~~a~~a~~nT~lAaaag~l~~~~~~~~~-~gk----------- 255 (385)
T 1u7g_A 192 AFKPHNLPMVFTGTAIL-YIGWFG---FNAGSAGTANEIAALAFVNTVVATAAAILGWIFGEWAL-RGL----------- 255 (385)
T ss_dssp SCCGGGHHHHHHHHHHH-HHHHHH---HHHGGGSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HSS-----------
T ss_pred CCCCCCHHHHHHHHHHH-HHHHhh---hcchhhhhccchhHhHHHHHHHHHHHHHHHHHHHHHHH-cCC-----------
Confidence 34566778888888777 665555 5666544333 45666677888888999998765431 110
Q ss_pred chhhhhhccCCCCCCCccccCCccccCCcccchhHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhhhhccc
Q 020780 98 ALGQKYLVGRARVPESTHEVDGKTVTTEPFYAMATLVYFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGA 177 (321)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~lfq~~Fa~~a~~I~sGavaeR~~~~~~~i~~~l~~~~vYp~~a 177 (321)
+ +. .-..+ .+.+-.....+-++-.++..-++..++ +++++....
T Consensus 256 -------------~------------------~~-~~~~n---G~lAGLVaITa~~~~v~p~~A~iiG~i-ag~i~~~~~ 299 (385)
T 1u7g_A 256 -------------P------------------SL-LGACS---GAIAGLVGVTPACGYIGVGGALIIGVV-AGLAGLWGV 299 (385)
T ss_dssp -------------C------------------CH-HHHHH---HHHHHHHHHTTTTTTSCHHHHHHHHHH-HHHHHHHHH
T ss_pred -------------C------------------CH-HHHHH---HHHHhhhhhccCCCCCCHHHHHHHHhH-HHHHHHHHH
Confidence 0 00 00111 222333333444467788888887777 455544422
Q ss_pred cceecchhh-hccCceeecCceeehhhhhHHHHHHHHHHcC
Q 020780 178 FSLWGGGFL-YQWGVIDYSGGYVIHVSSGIAGLTAAYWVGP 217 (321)
Q Consensus 178 hwvW~~GwL-~~lG~~DfaGs~vVH~~gG~~gL~~a~~lgp 217 (321)
. ++ ++++..|--|.-.||..+|..|...+-+...
T Consensus 300 ~------~l~~~l~iDD~l~a~~vHgv~Gi~G~l~~glfa~ 334 (385)
T 1u7g_A 300 T------MLKRLLRVDDPCDVFGVHGVCGIVGCIMTGIFAA 334 (385)
T ss_dssp H------HHHHHHCSCCGGGHHHHHHHHHHHHHHHHHHHTS
T ss_pred H------HHHHhCCCCCCCCCEeecccccHHHHHHHHHhcc
Confidence 2 34 4789999999999999999999988877754
No 8
>3hd6_A Ammonium transporter RH type C; ammonia, channel, rhesus, glycoprotein, membran structural genomics, PSI-2, protein structure initiative; HET: BOG; 2.10A {Homo sapiens}
Probab=38.52 E-value=1.2e+02 Score=30.14 Aligned_cols=142 Identities=15% Similarity=0.085 Sum_probs=81.0
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHcCCccc-hhHHHHHHHHHHHHHHHHHHHhhhheeee-ecCCCCCCCCCCCcch
Q 020780 22 NKGDSAWQMTASTLVGIQSMPGLLIIYASIVKK-KWAVNSAFMVLYAFAAVLICWVLVCYRMA-FGDQLLPFWGKGAPAL 99 (321)
Q Consensus 22 ~~~d~~w~l~~~~lV~~~m~~GfalleaG~vr~-kn~~~~l~~~~~~~~v~~i~~~~~Gy~la-fG~~~~~fiG~~~~~~ 99 (321)
..-|..+.++-+.+. ++--+|| .+|+... ..+..+++...++.+.+++.|.++-+-+. .|+ .+.
T Consensus 219 ~~hn~~~a~LGt~lL-W~GWfGF---N~gs~~~~~~~~~a~~NT~lAaAag~lt~~~~s~l~~~~gK--------~s~-- 284 (490)
T 3hd6_A 219 VYQSDLFAMIGTLFL-WMYWPSF---NSAISYHGDSQHRAAINTYCSLAACVLTSVAISSALHKKGK--------LDM-- 284 (490)
T ss_dssp CHHHHHHHHHHHHHH-HHHHHHH---TTTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCC--------CCH--
T ss_pred CCCCHHHHHHHHHHH-HHHHHhh---chhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--------CCH--
Confidence 345677778877777 6655664 5787753 33446666678888899999987654321 111 000
Q ss_pred hhhhhccCCCCCCCccccCCccccCCcccchhHHHHHHHHHHHHHHHHHHHHhhc-CcchhHHHHHHHHHHHhhhhcccc
Q 020780 100 GQKYLVGRARVPESTHEVDGKTVTTEPFYAMATLVYFQFTFAAITVILLAGSVLG-RMNIRAWMAFVPLWLMFSYTVGAF 178 (321)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~lfq~~Fa~~a~~I~sGavae-R~~~~~~~i~~~l~~~~vYp~~ah 178 (321)
..+.+ ++.+-....++-++ -.++..-++..++ +++++.....
T Consensus 285 ---------------------------------~~~~n---G~LAGLVAIT~~a~~~v~P~~AliIG~i-aG~i~~~~~~ 327 (490)
T 3hd6_A 285 ---------------------------------VHIQN---ATLAGGVAVGTAAEMMLMPYGALIIGFV-CGIISTLGFV 327 (490)
T ss_dssp ---------------------------------HHHHH---GGGHHHHHTTTTTTTCSCHHHHHHHHHH-HHHHHHHHHH
T ss_pred ---------------------------------HHhhh---ceeeeEEEEccCcccccCHHHHHHHHHH-HHHHHHHHHH
Confidence 00001 11122222222334 2456666666655 3444332111
Q ss_pred ceecchhh-hccCceeecCceeehhhhhHHHHHHHHHHc
Q 020780 179 SLWGGGFL-YQWGVIDYSGGYVIHVSSGIAGLTAAYWVG 216 (321)
Q Consensus 179 wvW~~GwL-~~lG~~DfaGs~vVH~~gG~~gL~~a~~lg 216 (321)
+. .-+| .+++..|--|.-.||..+|..|..++-+..
T Consensus 328 ~l--~~~l~~kl~iDD~lgv~~vHGv~Gi~G~l~~glfa 364 (490)
T 3hd6_A 328 YL--TPFLESRLHIQDTCGINNLHGIPGIIGGIVGAVTA 364 (490)
T ss_dssp HH--HHHHHHHHCCCCTTCHHHHTHHHHHHHHHHHHHHH
T ss_pred Hh--HHHHHHHCCCCccccchHHhhHHHHHHHHHHHHHh
Confidence 10 0123 478999999999999999999988776554
No 9
>2jaf_A Halorhodopsin, HR; chromophore, chloride pump, ION transport, membrane, chloride, receptor, ION pump, transport, sensory transduction; HET: BOG PLM RET; 1.7A {Halobacterium salinarium} PDB: 2jag_A* 1e12_A*
Probab=7.88 E-value=7.6e+02 Score=22.05 Aligned_cols=51 Identities=10% Similarity=-0.092 Sum_probs=27.3
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHHHHHHHhh
Q 020780 23 KGDSAWQMTASTLVGIQSMPGLLIIYASIVKKKWAVNSAFMVLYAFAAVLICWVL 77 (321)
Q Consensus 23 ~~d~~w~l~~~~lV~~~m~~GfalleaG~vr~kn~~~~l~~~~~~~~v~~i~~~~ 77 (321)
..++.|+....+.+ .. ..|.+++...+++|. ........+...++.+.|+.
T Consensus 29 ~~~s~Wlw~~~a~m-~~--~vF~~l~~~~~~~~~-R~~~~l~~lit~IAai~Yf~ 79 (274)
T 2jaf_A 29 LSSSLWVNVALAGI-AI--LVFVYMGRTIRPGRP-RLIWGATLMIPLVSISSYLG 79 (274)
T ss_dssp HHHHHHHHHHHHHH-HH--HHHHHHTTTCCTTHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHH-HH--HHHHHHHhcccCCcc-eehhHHHHHHHHHHHHHHHH
Confidence 34567775554444 33 566666665555443 33334444455666666643
No 10
>1btq_A BAND 3 anion transport protein; NMR {} SCOP: j.35.1.1 PDB: 1btr_A
Probab=5.81 E-value=2.5e+02 Score=16.36 Aligned_cols=20 Identities=20% Similarity=0.270 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHhhcC
Q 020780 136 FQFTFAAITVILLAGSVLGR 155 (321)
Q Consensus 136 fq~~Fa~~a~~I~sGavaeR 155 (321)
+.+-|++.+.+|..|.+.|+
T Consensus 7 ~FlyFa~l~paIaFGgLl~~ 26 (26)
T 1btq_A 7 IFIYFAALSPAITFGXXXXX 26 (26)
T ss_pred HHHHHHHHcchhccccccCC
Confidence 44568999999998877653
Done!