BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020781
(321 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1QD1|A Chain A, The Crystal Structure Of The Formiminotransferase Domain
Of Formiminotransferase-Cyclodeaminase.
pdb|1QD1|B Chain B, The Crystal Structure Of The Formiminotransferase Domain
Of Formiminotransferase-Cyclodeaminase
Length = 325
Score = 77.8 bits (190), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 79/282 (28%), Positives = 113/282 (40%), Gaps = 26/282 (9%)
Query: 19 SILVCCKLFISESRNLAALDAIERAARLDTETVIVNKFEDRIYNRARYTLVSYVVHDSTG 78
S LV C SE +N +DAI RA V+++ NR YT V G
Sbjct: 1 SQLVECVPNFSEGKNQEVIDAISRAVAQTPGCVLLDVDSGPSTNRTVYTFVGRPEDVVEG 60
Query: 79 TAIYSPLRQTIIAMADAAYGAINLETHSGAHPRLGVVDDIVFHPLARASLDEAAWLAKAV 138
+ A AAY I++ H G HPR+G +D F P+ ++DE A+A
Sbjct: 61 A----------LNAARAAYQLIDMSRHHGEHPRMGALDVCPFIPVRGVTMDECVRCAQAF 110
Query: 139 AADIGSRFQVPVFLYAAAHPTGKPLDTIRRELGYYRPNSMGNQWAGWTMPEILPERPNEG 198
+ VPV+LY A T G Y + A W P+ G
Sbjct: 111 GQRLAEELGVPVYLYGEAARTAGRQSLPALRAGEYEALPEKLKQAEWA--------PDFG 162
Query: 199 PIQVSPARGIAMIGARPWVALYNIPIMSTDVAATRRIARMVSARG------GGLPTVQTL 252
P P+ G + GAR ++ +NI ++ST A RIA + +G G L VQ +
Sbjct: 163 PSAFVPSWGATVAGARKFLLAFNINLLSTREQA-HRIALDLREQGRGKDQPGRLKKVQAI 221
Query: 253 GLVHGEDS-TEIACMLLEPNQVGADRVQNRVEKLAAEEGLDV 293
G E + +++ LL+ G V + A E L V
Sbjct: 222 GWYLDEKNLAQVSTNLLDFEVTGLHTVFEETCREAQELSLPV 263
>pdb|2PFD|A Chain A, Anisotropically Refined Structure Of Ftcd
pdb|2PFD|B Chain B, Anisotropically Refined Structure Of Ftcd
pdb|2PFD|C Chain C, Anisotropically Refined Structure Of Ftcd
pdb|2PFD|D Chain D, Anisotropically Refined Structure Of Ftcd
Length = 541
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 99/243 (40%), Gaps = 29/243 (11%)
Query: 19 SILVCCKLFISESRNLAALDAIERAARLDTETVIVNKFEDRIYNRARYTLVSYVVHDSTG 78
S LV C SE N +DAI +A V+++ NR YT V G
Sbjct: 2 SQLVECVPNFSEGNNQEVIDAISQAISQTPGCVLLDVDAGPSTNRTVYTFVGQPECVVEG 61
Query: 79 TAIYSPLRQTIIAMADAAYGAINLETHSGAHPRLGVVDDIVFHPLARASLDEAAWLAKAV 138
++ A A I+ H G HPR G +D F P+ S DE AKA
Sbjct: 62 A----------LSAARTASQLIDXRKHKGEHPRXGALDVCPFIPVRGVSXDECVLCAKAF 111
Query: 139 AADIGSRFQVPVFLY--AAAHPTGKPLDTIRRELGYYRPNSMGNQWAGWTMPEILPERPN 196
+ VPV+LY AA P+ + L IR G Y + A W P+
Sbjct: 112 GQRLAEELNVPVYLYGEAAQXPSRQTLPAIR--AGEYEALPEKLKQAEWV--------PD 161
Query: 197 EGPIQVSPARGIAMIGARPWVALYNIPIMSTDVAATRRIARMVSARG------GGLPTVQ 250
GP P+ G + GAR ++ +NI ++ST A RIA + +G G L VQ
Sbjct: 162 FGPSSFVPSWGATVTGARKFLIAFNINLLSTKEQA-HRIALNLREQGRGKDQPGRLKKVQ 220
Query: 251 TLG 253
+G
Sbjct: 221 GIG 223
>pdb|1TT9|A Chain A, Structure Of The Bifunctional And Golgi Associated
Formiminotransferase Cyclodeaminase Octamer
pdb|1TT9|B Chain B, Structure Of The Bifunctional And Golgi Associated
Formiminotransferase Cyclodeaminase Octamer
pdb|1TT9|C Chain C, Structure Of The Bifunctional And Golgi Associated
Formiminotransferase Cyclodeaminase Octamer
pdb|1TT9|D Chain D, Structure Of The Bifunctional And Golgi Associated
Formiminotransferase Cyclodeaminase Octamer
Length = 541
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 99/243 (40%), Gaps = 29/243 (11%)
Query: 19 SILVCCKLFISESRNLAALDAIERAARLDTETVIVNKFEDRIYNRARYTLVSYVVHDSTG 78
S LV C SE N +DAI +A V+++ NR YT V G
Sbjct: 2 SQLVECVPNFSEGNNQEVIDAISQAISQTPGCVLLDVDAGPSTNRTVYTFVGQPECVVEG 61
Query: 79 TAIYSPLRQTIIAMADAAYGAINLETHSGAHPRLGVVDDIVFHPLARASLDEAAWLAKAV 138
++ A A I+ H G HPR G +D F P+ S DE AKA
Sbjct: 62 A----------LSAARTASQLIDXRKHKGEHPRXGALDVCPFIPVRGVSXDECVLCAKAF 111
Query: 139 AADIGSRFQVPVFLY--AAAHPTGKPLDTIRRELGYYRPNSMGNQWAGWTMPEILPERPN 196
+ VPV+LY AA P+ + L IR G Y + A W P+
Sbjct: 112 GQRLAEELNVPVYLYGEAAQXPSRQTLPAIR--AGEYEALPEKLKQAEWV--------PD 161
Query: 197 EGPIQVSPARGIAMIGARPWVALYNIPIMSTDVAATRRIARMVSARG------GGLPTVQ 250
GP P+ G + GAR ++ +NI ++ST A RIA + +G G L VQ
Sbjct: 162 FGPSSFVPSWGATVTGARKFLIAFNINLLSTKEQA-HRIALNLREQGRGKDQPGRLKKVQ 220
Query: 251 TLG 253
+G
Sbjct: 221 GIG 223
>pdb|1L9M|A Chain A, Three-Dimensional Structure Of The Human Transglutaminase
3 Enzyme: Binding Of Calcium Ions Change Structure For
Activation
pdb|1L9M|B Chain B, Three-Dimensional Structure Of The Human Transglutaminase
3 Enzyme: Binding Of Calcium Ions Change Structure For
Activation
pdb|1L9N|A Chain A, Three-Dimensional Structure Of The Human Transglutaminase
3 Enzyme: Binding Of Calcium Ions Change Structure For
Activation
pdb|1L9N|B Chain B, Three-Dimensional Structure Of The Human Transglutaminase
3 Enzyme: Binding Of Calcium Ions Change Structure For
Activation
pdb|1NUD|A Chain A, Role Of Calcium Ions In The Activation And Activity Of The
Transglutaminase 3 Enzyme (3 Calciums, Active Form)
pdb|1NUD|B Chain B, Role Of Calcium Ions In The Activation And Activity Of The
Transglutaminase 3 Enzyme (3 Calciums, Active Form)
pdb|1NUF|A Chain A, Role Of Calcium Ions In The Activation And Activity Of The
Transglutaminase 3 Enzyme
pdb|1NUG|A Chain A, Role Of Calcium Ions In The Activation And Activity Of The
Transglutaminase 3 Enzyme (2 Calciums, 1 Mg, Inactive
Form)
pdb|1NUG|B Chain B, Role Of Calcium Ions In The Activation And Activity Of The
Transglutaminase 3 Enzyme (2 Calciums, 1 Mg, Inactive
Form)
Length = 692
Score = 31.6 bits (70), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 46/101 (45%), Gaps = 9/101 (8%)
Query: 139 AADIGSRFQVPVFLYAAAHPTGKPLDTIRR----ELGYYRPNSMGNQWAGWTMPEILPER 194
A D V V+ +P K D++ G++ + +G + GW + + P+
Sbjct: 299 AHDTDRNLSVDVYYDPMGNPLDKGSDSVWNFHVWNEGWFVRSDLGPSYGGWQVLDATPQE 358
Query: 195 PNEGPIQVSPARGIAMIGARPW-VAL-YNIPIMSTDVAATR 233
++G Q PA ++IG R V L +++P + +V A R
Sbjct: 359 RSQGVFQCGPA---SVIGVREGDVQLNFDMPFIFAEVNADR 396
>pdb|3T37|A Chain A, Crystal Structure Of Pyridoxine 4-Oxidase From Mesorbium
Loti
Length = 526
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 13/79 (16%)
Query: 119 VFHPLARASLDEAAWLAKAVAADIGSRFQV-PVFLYAAAHPTGKPLDTIRRELGYYRPNS 177
+ HP +R S+ + ++G R + P +L TG+ + RR L R
Sbjct: 378 ITHPTSRGSV-------RISGPELGDRLIIDPAYLQ-----TGRDRERFRRALEASRTIG 425
Query: 178 MGNQWAGWTMPEILPERPN 196
++ AGW E+LP PN
Sbjct: 426 HRDELAGWRERELLPGTPN 444
>pdb|3OQC|A Chain A, Ubiquitin-Fold Modifier 1 Specific Protease, Ufsp2
pdb|3OQC|B Chain B, Ubiquitin-Fold Modifier 1 Specific Protease, Ufsp2
Length = 481
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 25/42 (59%)
Query: 243 GGGLPTVQTLGLVHGEDSTEIACMLLEPNQVGADRVQNRVEK 284
GGG+ LG+ E + +I ++L+P+ GA+ +Q +EK
Sbjct: 412 GGGVLAHTILGVAWNETTGQIKFLILDPHYTGAEDLQVMLEK 453
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,426,335
Number of Sequences: 62578
Number of extensions: 390498
Number of successful extensions: 871
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 860
Number of HSP's gapped (non-prelim): 8
length of query: 321
length of database: 14,973,337
effective HSP length: 99
effective length of query: 222
effective length of database: 8,778,115
effective search space: 1948741530
effective search space used: 1948741530
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)