BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020781
(321 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O88618|FTCD_RAT Formimidoyltransferase-cyclodeaminase OS=Rattus norvegicus GN=Ftcd
PE=1 SV=4
Length = 541
Score = 80.1 bits (196), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 102/243 (41%), Gaps = 29/243 (11%)
Query: 19 SILVCCKLFISESRNLAALDAIERAARLDTETVIVNKFEDRIYNRARYTLVSYVVHDSTG 78
S LV C SE N +DAI +A V+++ NR YT V G
Sbjct: 2 SQLVECVPNFSEGNNQEVIDAISQAISQTPGCVLLDVDAGPSTNRTVYTFVGQPECVVEG 61
Query: 79 TAIYSPLRQTIIAMADAAYGAINLETHSGAHPRLGVVDDIVFHPLARASLDEAAWLAKAV 138
++ A A I++ H G HPR+G +D F P+ S+DE AKA
Sbjct: 62 A----------LSAARTASQLIDMRKHKGEHPRMGALDVCPFIPVRGVSMDECVLCAKAF 111
Query: 139 AADIGSRFQVPVFLY--AAAHPTGKPLDTIRRELGYYRPNSMGNQWAGWTMPEILPERPN 196
+ VPV+LY AA P+ + L IR G Y + A W P+
Sbjct: 112 GQRLAEELNVPVYLYGEAAQMPSRQTLPAIRA--GEYEALPEKLKQAEWV--------PD 161
Query: 197 EGPIQVSPARGIAMIGARPWVALYNIPIMSTDVAATRRIARMVSARG------GGLPTVQ 250
GP P+ G + GAR ++ +NI ++ST A RIA + +G G L VQ
Sbjct: 162 FGPSSFVPSWGATVTGARKFLIAFNINLLSTKEQA-HRIALNLREQGRGKDQPGRLKKVQ 220
Query: 251 TLG 253
+G
Sbjct: 221 GIG 223
>sp|Q91XD4|FTCD_MOUSE Formimidoyltransferase-cyclodeaminase OS=Mus musculus GN=Ftcd PE=1
SV=1
Length = 541
Score = 79.0 bits (193), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 101/243 (41%), Gaps = 29/243 (11%)
Query: 19 SILVCCKLFISESRNLAALDAIERAARLDTETVIVNKFEDRIYNRARYTLVSYVVHDSTG 78
S LV C SE N +DAI RA V+++ NR YT V G
Sbjct: 2 SQLVECVPNFSEGNNQEVIDAISRAISQTPGCVLLDVDAGPSTNRTVYTFVGQPECVVEG 61
Query: 79 TAIYSPLRQTIIAMADAAYGAINLETHSGAHPRLGVVDDIVFHPLARASLDEAAWLAKAV 138
+ A A I++ H G HPR+G +D F P+ S++E AKA
Sbjct: 62 A----------LHAARTASQLIDMSKHKGEHPRMGALDVCPFIPVRGVSMEECVLCAKAF 111
Query: 139 AADIGSRFQVPVFLY--AAAHPTGKPLDTIRRELGYYRPNSMGNQWAGWTMPEILPERPN 196
+ VPV+LY AA P+ + L IR G Y + A W P+
Sbjct: 112 GQRLAEELNVPVYLYGEAAQTPSRQTLPAIRA--GEYEALPEKLKQAEWV--------PD 161
Query: 197 EGPIQVSPARGIAMIGARPWVALYNIPIMSTDVAATRRIARMVSARG------GGLPTVQ 250
GP P+ G + GAR ++ +NI ++ST A RIA + +G G L VQ
Sbjct: 162 FGPSSFVPSWGATVTGARKFLIAFNINLLSTKEQA-HRIALNLREQGRGKDQPGRLKKVQ 220
Query: 251 TLG 253
+G
Sbjct: 221 GIG 223
>sp|P53603|FTCD_PIG Formimidoyltransferase-cyclodeaminase OS=Sus scrofa GN=FTCD PE=1
SV=1
Length = 541
Score = 77.0 bits (188), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 72/243 (29%), Positives = 102/243 (41%), Gaps = 29/243 (11%)
Query: 19 SILVCCKLFISESRNLAALDAIERAARLDTETVIVNKFEDRIYNRARYTLVSYVVHDSTG 78
S LV C SE +N +DAI RA V+++ NR YT V G
Sbjct: 2 SQLVECVPNFSEGKNQEVIDAISRAVAQTPGCVLLDVDSGPSTNRTVYTFVGRPEDVVEG 61
Query: 79 TAIYSPLRQTIIAMADAAYGAINLETHSGAHPRLGVVDDIVFHPLARASLDEAAWLAKAV 138
+ A AAY I++ H G HPR+G +D F P+ ++DE A+A
Sbjct: 62 A----------LNAARAAYQLIDMSRHHGEHPRMGALDVCPFIPVRGVTMDECVRCAQAF 111
Query: 139 AADIGSRFQVPVFLYAAAHPTG--KPLDTIRRELGYYRPNSMGNQWAGWTMPEILPERPN 196
+ VPV+LY A T + L +R G Y + A W P+
Sbjct: 112 GQRLAEELGVPVYLYGEAARTAGRQSLPALR--AGEYEALPEKLKQAEWA--------PD 161
Query: 197 EGPIQVSPARGIAMIGARPWVALYNIPIMSTDVAATRRIARMVSARG------GGLPTVQ 250
GP P+ G + GAR ++ +NI ++ST A RIA + +G G L VQ
Sbjct: 162 FGPSAFVPSWGATVAGARKFLLAFNINLLSTREQA-HRIALDLREQGRGKDQPGRLKKVQ 220
Query: 251 TLG 253
+G
Sbjct: 221 AIG 223
>sp|Q54JL3|FTCD_DICDI Formimidoyltransferase-cyclodeaminase OS=Dictyostelium discoideum
GN=ftcd PE=3 SV=1
Length = 537
Score = 75.5 bits (184), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 62/225 (27%), Positives = 95/225 (42%), Gaps = 19/225 (8%)
Query: 21 LVCCKLFISESRNLAALDAIERAARLDTETVIVNKFEDRIYNRARYTLVSYVVHDSTGTA 80
LV C SE R+ +DAI +A R +++ + NR YT V DS
Sbjct: 4 LVECVPNFSEGRDQTIIDAISKAIRDTAGCTLLDVDPGKSTNRTVYTFVG--CPDS---- 57
Query: 81 IYSPLRQTIIAMADAAYGAINLETHSGAHPRLGVVDDIVFHPLARASLDEAAWLAKAVAA 140
+ I A+ I++ H G HPR+G +D F P+ +++E +K
Sbjct: 58 ----IVNGAINATKVAFKLIDMTKHHGEHPRMGALDVCPFVPVRNVTMEECVNCSKEFGK 113
Query: 141 DIGSRFQVPVFLYAAAHPTGKPLDTIRRELGYYRPNSMGNQWAGWTMPEILPERPNEGPI 200
I VP+FLY A + R++L R G + +P+ GP
Sbjct: 114 RISEEIGVPIFLYEEAST-----QSYRKQLKQIR---QGEYEGLEEKLKEEKWKPDFGPA 165
Query: 201 QVSPARGIAMIGARPWVALYNIPIMSTDVAATRRIARMVSARGGG 245
+ P+ G ++ GAR ++ YN+ I+ T A RIA V G G
Sbjct: 166 KFIPSYGASVTGARSFLIAYNVNILGTKEQA-HRIALNVREAGRG 209
>sp|O95954|FTCD_HUMAN Formimidoyltransferase-cyclodeaminase OS=Homo sapiens GN=FTCD PE=1
SV=2
Length = 541
Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 72/246 (29%), Positives = 100/246 (40%), Gaps = 35/246 (14%)
Query: 19 SILVCCKLFISESRNLAALDAIERAARLDTETVIVNKFEDRIYNRARYTLV---SYVVHD 75
S LV C SE +N +DAI A V+++ NR YT V VV
Sbjct: 2 SQLVECVPNFSEGKNQEVIDAISGAITQTPGCVLLDVDAGPSTNRTVYTFVGPPECVVEG 61
Query: 76 STGTAIYSPLRQTIIAMADAAYGAINLETHSGAHPRLGVVDDIVFHPLARASLDEAAWLA 135
+ + A A I++ H G HPR+G +D F P+ S+DE A
Sbjct: 62 A-------------LNAARVASRLIDMSRHQGEHPRMGALDVCPFIPVRGVSVDECVLCA 108
Query: 136 KAVAADIGSRFQVPVFLY--AAAHPTGKPLDTIRRELGYYRPNSMGNQWAGWTMPEILPE 193
+A + VPV+LY AA + + L IR G Y Q A W
Sbjct: 109 QAFGQRLAEELDVPVYLYGEAARMDSRRTLPAIR--AGEYEALPKKLQQADWA------- 159
Query: 194 RPNEGPIQVSPARGIAMIGARPWVALYNIPIMSTDVAATRRIARMVSARG------GGLP 247
P+ GP P+ G GAR ++ +NI ++ T A RIA + +G G L
Sbjct: 160 -PDFGPSSFVPSWGATATGARKFLIAFNINLLGTKEQA-HRIALNLREQGRGKDQPGRLK 217
Query: 248 TVQTLG 253
VQ +G
Sbjct: 218 KVQGIG 223
>sp|Q9YH58|FTCD_CHICK Formimidoyltransferase-cyclodeaminase OS=Gallus gallus GN=FTCD PE=2
SV=1
Length = 541
Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 69/258 (26%), Positives = 107/258 (41%), Gaps = 30/258 (11%)
Query: 21 LVCCKLFISESRNLAALDAIERAARLDTETVIVNKFEDRIYNRARYTLVSYVVHDSTGTA 80
LV C SE N ++A+ RA +++ NR YT V T A
Sbjct: 4 LVECVPNFSEGCNKEVIEALGRAISQTPGCTLLDVDAGASTNRTVYTFVG------TPEA 57
Query: 81 IYSPLRQTIIAMADAAYGAINLETHSGAHPRLGVVDDIVFHPLARASLDEAAWLAKAVAA 140
+ + ++ A A+ I++ H G HPR+G +D F P+ S++E A
Sbjct: 58 VV----EGALSAARMAWELIDMSRHKGEHPRMGALDVCPFVPVMNISMEECVICAHVFGQ 113
Query: 141 DIGSRFQVPVFLY--AAAHPTGKPLDTIRRELGYYRPNSMGNQWAGWTMPEILPERPNEG 198
+ VPV+LY AA + + L IR G Y + W P+ G
Sbjct: 114 RLSEELGVPVYLYGEAARQESRRTLPAIRA--GEYEALPKKLEKPEWV--------PDFG 163
Query: 199 PIQVSPARGIAMIGARPWVALYNIPIMSTDVAATRRIARMVSARG------GGLPTVQTL 252
P P G + GAR ++ YNI ++ T A RIA + +G G L VQ +
Sbjct: 164 PPAFVPQWGATVTGARTFLIAYNINLLCTKELA-HRIALNIREQGRGADQPGSLKKVQGI 222
Query: 253 G-LVHGEDSTEIACMLLE 269
G + E+ +++ LL+
Sbjct: 223 GWYLEEENIAQVSTNLLD 240
>sp|A8LCM4|COAX_FRASN Type III pantothenate kinase OS=Frankia sp. (strain EAN1pec)
GN=coaX PE=3 SV=1
Length = 253
Score = 32.0 bits (71), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 7/72 (9%)
Query: 209 AMIGARPWVALYNIPIMSTDVAATRRIARMVSARGGGLPTVQTLGLVHGEDSTEIACMLL 268
++G P + + + ST AA R I RMVS +PTV +V T + ++
Sbjct: 45 GLLGDHP---IGGVSVCSTVPAALREIRRMVSRTFPAMPTV----VVEPGTRTGVPILID 97
Query: 269 EPNQVGADRVQN 280
P + GADR+ N
Sbjct: 98 NPKEAGADRIMN 109
>sp|Q9FGR0|CPSF1_ARATH Cleavage and polyadenylation specificity factor subunit 1
OS=Arabidopsis thaliana GN=CPSF160 PE=1 SV=2
Length = 1442
Score = 32.0 bits (71), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 56/140 (40%), Gaps = 14/140 (10%)
Query: 156 AHPTGKPLDTIRRELGYYRPNSMGNQWAGWTMPEILPERP---NEGPIQV-SPARGIAMI 211
++P KPL+ + L G Q M +R E IQ+ P R
Sbjct: 1041 SYPVSKPLNQVLSSL---VDQEAGQQLDNHNMSSDDLQRTYTVEEFEIQILEPERS---- 1093
Query: 212 GARPWVALYNIPIMSTDVAATRRIARMVSARGGGLPTVQTLG--LVHGEDSTEIACMLLE 269
PW IP+ +++ A T R+ +++A G T+ +G V GED +LL
Sbjct: 1094 -GGPWETKAKIPMQTSEHALTVRVVTLLNASTGENETLLAVGTAYVQGEDVAARGRVLLF 1152
Query: 270 PNQVGADRVQNRVEKLAAEE 289
D QN V ++ + E
Sbjct: 1153 SFGKNGDNSQNVVTEVYSRE 1172
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.134 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 118,926,690
Number of Sequences: 539616
Number of extensions: 5004315
Number of successful extensions: 12286
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 12269
Number of HSP's gapped (non-prelim): 11
length of query: 321
length of database: 191,569,459
effective HSP length: 117
effective length of query: 204
effective length of database: 128,434,387
effective search space: 26200614948
effective search space used: 26200614948
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)