Query 020781
Match_columns 321
No_of_seqs 107 out of 264
Neff 4.5
Searched_HMMs 46136
Date Fri Mar 29 05:06:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020781.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020781hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02024 FtcD glutamate formi 100.0 2E-114 5E-119 820.7 30.0 274 18-312 1-282 (298)
2 COG3643 Glutamate formiminotra 100.0 4E-106 9E-111 744.5 25.5 274 18-312 1-282 (302)
3 PF07837 FTCD_N: Formiminotran 100.0 7E-77 1.5E-81 530.3 11.0 175 20-215 1-178 (178)
4 PF02971 FTCD: Formiminotransf 100.0 6.8E-32 1.5E-36 234.0 11.5 91 216-307 1-98 (145)
5 COG2984 ABC-type uncharacteriz 58.1 1.2E+02 0.0026 30.4 10.7 144 121-302 37-200 (322)
6 PRK13365 protocatechuate 4,5-d 55.6 41 0.0009 32.4 7.0 70 226-295 95-187 (279)
7 COG3808 OVP1 Inorganic pyropho 50.6 9.4 0.0002 40.7 1.9 30 34-65 550-579 (703)
8 COG4937 Predicted regulatory d 47.6 38 0.00081 30.6 4.9 60 10-69 73-135 (171)
9 cd04869 ACT_GcvR_2 ACT domains 44.3 1.3E+02 0.0027 22.4 6.8 65 230-294 11-78 (81)
10 TIGR00250 RNAse_H_YqgF RNAse H 44.0 28 0.00061 29.8 3.5 39 118-156 53-92 (130)
11 cd07359 PCA_45_Doxase_B_like S 43.9 71 0.0015 30.0 6.5 70 227-296 92-181 (271)
12 cd07364 PCA_45_Dioxygenase_B S 42.8 83 0.0018 30.3 6.9 70 226-295 95-187 (277)
13 PRK14637 hypothetical protein; 41.4 35 0.00076 30.2 3.8 71 96-171 22-98 (151)
14 cd07363 45_DOPA_Dioxygenase Th 39.5 58 0.0013 30.6 5.2 72 220-296 70-158 (253)
15 COG0779 Uncharacterized protei 39.0 43 0.00092 30.0 3.9 70 97-171 23-99 (153)
16 COG0106 HisA Phosphoribosylfor 37.7 50 0.0011 31.8 4.4 82 225-312 60-158 (241)
17 PRK14643 hypothetical protein; 34.4 50 0.0011 29.7 3.6 75 96-171 23-104 (164)
18 PF07823 CPDase: Cyclic phosph 33.5 61 0.0013 29.5 4.1 101 34-151 56-165 (196)
19 cd07320 Extradiol_Dioxygenase_ 32.9 3.9E+02 0.0085 24.5 9.7 63 227-295 81-165 (260)
20 PRK14633 hypothetical protein; 32.8 57 0.0012 28.8 3.7 71 96-171 18-94 (150)
21 cd07949 PCA_45_Doxase_B_like_1 32.4 1.6E+02 0.0034 28.4 7.0 70 226-295 95-186 (276)
22 PRK00109 Holliday junction res 32.4 59 0.0013 28.1 3.7 36 121-156 62-98 (138)
23 COG3852 NtrB Signal transducti 32.1 70 0.0015 32.4 4.5 49 272-320 200-256 (363)
24 cd07368 PhnC_Bs_like PhnC is a 31.7 1.4E+02 0.0029 28.7 6.4 71 226-296 92-187 (277)
25 PRK03011 butyrate kinase; Prov 30.7 54 0.0012 32.8 3.6 47 117-171 99-152 (358)
26 PRK08508 biotin synthase; Prov 29.7 2.6E+02 0.0056 26.6 7.9 87 226-313 71-175 (279)
27 KOG0968 DNA polymerase zeta, c 28.4 1.2E+02 0.0025 35.7 5.9 86 58-152 1083-1172(1488)
28 cd07055 BMC_like_2 Bacterial M 26.4 2.5E+02 0.0055 21.7 5.8 37 36-72 9-47 (61)
29 cd07371 2A5CPDO_AB The alpha a 26.1 1.4E+02 0.0029 28.4 5.3 66 226-296 84-171 (268)
30 TIGR03341 YhgI_GntY IscR-regul 25.4 1.3E+02 0.0028 27.6 4.8 86 19-111 86-189 (190)
31 cd08060 MPN_UPF0172 Mov34/MPN/ 24.4 1.6E+02 0.0035 26.7 5.2 46 270-315 48-99 (182)
32 TIGR02298 HpaD_Fe 3,4-dihydrox 24.2 1.9E+02 0.0041 27.9 5.9 67 227-295 94-179 (282)
33 PRK14635 hypothetical protein; 24.0 1.1E+02 0.0024 27.3 4.0 69 95-164 18-89 (162)
34 COG0816 Predicted endonuclease 23.7 94 0.002 27.4 3.4 40 117-156 57-97 (141)
35 PRK14647 hypothetical protein; 23.3 1.2E+02 0.0025 27.0 4.0 70 97-171 23-99 (159)
36 cd07362 HPCD_like Class III ex 23.3 1.9E+02 0.004 27.6 5.7 66 226-296 89-176 (272)
37 cd07367 CarBb CarBb is the B s 23.0 3E+02 0.0065 26.2 7.0 70 226-295 87-177 (268)
38 PRK14631 hypothetical protein; 23.0 1.1E+02 0.0024 27.8 3.9 48 124-171 65-117 (174)
39 cd04875 ACT_F4HF-DF N-terminal 22.9 3.2E+02 0.0069 20.2 6.6 62 229-292 10-73 (74)
40 PF03665 UPF0172: Uncharacteri 22.7 1.5E+02 0.0033 27.3 4.7 41 275-315 60-105 (196)
41 PF03652 UPF0081: Uncharacteri 22.5 55 0.0012 28.2 1.7 36 121-156 59-96 (135)
42 PRK13366 protocatechuate 4,5-d 22.4 3E+02 0.0065 26.8 6.9 75 221-295 90-187 (284)
43 PRK13551 agmatine deiminase; P 22.4 2.2E+02 0.0047 28.8 6.1 92 189-292 84-196 (362)
44 PF01187 MIF: Macrophage migra 22.2 1.2E+02 0.0027 24.9 3.7 29 121-149 62-90 (114)
45 COG1359 Uncharacterized conser 22.1 1.8E+02 0.0039 23.3 4.6 51 20-71 4-57 (100)
46 COG1324 CutA Uncharacterized p 21.8 2E+02 0.0043 24.4 4.9 64 223-290 7-77 (104)
47 PRK14646 hypothetical protein; 21.5 1.1E+02 0.0025 27.1 3.6 72 96-171 21-100 (155)
48 COG3963 Phospholipid N-methylt 21.5 83 0.0018 29.3 2.7 55 98-154 102-158 (194)
49 PRK14639 hypothetical protein; 21.4 1.2E+02 0.0025 26.5 3.6 71 96-171 11-88 (140)
50 PF02119 FlgI: Flagellar P-rin 21.3 1.6E+02 0.0034 29.8 4.9 59 201-265 136-204 (342)
51 PTZ00397 macrophage migration 21.3 1.4E+02 0.003 24.5 3.9 34 116-149 56-92 (116)
52 PRK12283 tryptophanyl-tRNA syn 21.2 2.9E+02 0.0063 28.5 6.8 39 109-148 130-172 (398)
53 PRK13364 protocatechuate 4,5-d 20.7 3.7E+02 0.008 26.0 7.1 70 226-295 95-186 (278)
54 PRK12282 tryptophanyl-tRNA syn 20.2 2.5E+02 0.0054 27.8 6.0 37 119-156 144-180 (333)
No 1
>TIGR02024 FtcD glutamate formiminotransferase. This model covers enzymes from metazoa as well as gram-positive bacteria and archaea. In humans, deficiency of this enzyme results in a disease phenotype. The crystal structure of the enzyme has been studied in the context of the catalytic mechanism.
Probab=100.00 E-value=2.3e-114 Score=820.66 Aligned_cols=274 Identities=26% Similarity=0.407 Sum_probs=265.5
Q ss_pred cccceeeeccccccCCHHHHHHHHHHHhhCCCeEEEeecCCCCCCcceEEEeeccccCCCCCcccchHHHHHHHHHHHHH
Q 020781 18 QSILVCCKLFISESRNLAALDAIERAARLDTETVIVNKFEDRIYNRARYTLVSYVVHDSTGTAIYSPLRQTIIAMADAAY 97 (321)
Q Consensus 18 ~~~lveCvpN~SEGR~~~vie~I~~a~~~~~gv~LLd~~~D~dyNRtv~T~vG~~~~p~~~~~~~~~v~eaa~~~~~~A~ 97 (321)
|+||+|||||||||||+++||+|++++++++||+|||+|+|+|||||||||+|+ |+ +|.+|+|+++++|+
T Consensus 1 m~klveCvpnfSEGR~~~vie~I~~a~~~~~gv~lld~~~D~d~NRsv~Tlvg~---pe-------~v~eaa~~~~~~A~ 70 (298)
T TIGR02024 1 MMKLVECVPNFSEGRNKEVIEKIVDAIIKTDNVKLLDVDMDPDHNRSVITFVGE---PE-------CVVNAALKLAKKAA 70 (298)
T ss_pred CceeEEEeeeeccCCCHHHHHHHHHHHhcCCCcEEEeCCCCCCCCceEEEEecC---hH-------HHHHHHHHHHHHHH
Confidence 567999999999999999999999999999999999999999999999999995 66 99999999999999
Q ss_pred HhcCCCCCccCCCCCccccceeceeCCCCCHHHHHHHHHHHHHHHhhhcCCcEeeeccc--CCCCCChHHHhhhcCccCC
Q 020781 98 GAINLETHSGAHPRLGVVDDIVFHPLARASLDEAAWLAKAVAADIGSRFQVPVFLYAAA--HPTGKPLDTIRRELGYYRP 175 (321)
Q Consensus 98 elIDm~~H~G~HPR~GavDviPf~Pl~~~t~eec~~lA~~lg~~ig~~l~vPVyLYg~A--~p~rr~La~iRr~~G~f~~ 175 (321)
++|||++|+|+|||||||||||||||+++|||||+++|+.+|++||++|+|||||||++ +|+|++|++||| |
T Consensus 71 elIDm~~H~G~HPR~GAvDvipf~Pl~~~t~eec~~lA~~vg~~i~~~l~VPVyLY~~aA~~p~r~~La~IRr--G---- 144 (298)
T TIGR02024 71 ELIDMRNHKGEHPRMGAADVIPFIPVRNVTMEECVELAKEFGKRLGEELGVPVYLYEEAATRPERQTLAAIRK--G---- 144 (298)
T ss_pred HhcCcccccCCCCCCCccceeeeeeCCCCCHHHHHHHHHHHHHHHHHhhCCCEEEehhhccCCCCCCHHHHhh--h----
Confidence 99999999999999999999999999999999999999999999999999999999644 899999999999 7
Q ss_pred CCCCCcccCCCCC-CCCCCCCCCCCCCCCCCCCeeeecCCCCeEEeeeeecCCCHHHHHHHHHHhccCCCCCCCceEeee
Q 020781 176 NSMGNQWAGWTMP-EILPERPNEGPIQVSPARGIAMIGARPWVALYNIPIMSTDVAATRRIARMVSARGGGLPTVQTLGL 254 (321)
Q Consensus 176 ~~~~~~~~g~~~~-~~~~~~PD~GP~~~~p~~Gat~vGAr~~liayNV~L~t~dl~~Ar~IA~~vR~~gGGL~~VqAmgl 254 (321)
||+|+.++ ++++|+|||||+++||++|+|+||||+||+||||||+|+|+++||+||++||+|||||++||||||
T Consensus 145 -----q~eg~~e~~~~~~~~PD~Gp~~~~p~~Gat~vGAr~~liayNV~L~t~d~~~a~~IAk~vR~~gGGL~~VqAmgl 219 (298)
T TIGR02024 145 -----QYEALFEKIKDPKWKPDFGPSEFNPKAGATATGARKFLIAFNVNLGTSNLEIAKKIAKAIRFQGGGLRFVKAIGL 219 (298)
T ss_pred -----hhccchhhccCCCCCCCCCCCCCCCCCCeEEEecCCceEEEEEeecCCCHHHHHHHHHHhhhcCCCccceEEeeE
Confidence 88888888 689999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeC-CCcEEEEeecCCCCCCCHHHHHHHHHHHHHHcCCceeeeeccCCChHHHH----HHHHH
Q 020781 255 VHG-EDSTEIACMLLEPNQVGADRVQNRVEKLAAEEGLDVEKGYFTDFSPEMIV----EKYMN 312 (321)
Q Consensus 255 ~~~-~g~~qVS~NL~d~~~t~~~~V~e~v~~~A~~~Gv~V~~~y~~~f~~~~il----e~~l~ 312 (321)
+|+ +|++||||||+||++||+|+|||+|+++|++||++|++||++||+|+++| |+||+
T Consensus 220 ~~~~~~~vqVsmNl~d~~~t~~~~v~e~v~~~A~~~Gv~V~gse~vGl~P~~al~~~~~~yl~ 282 (298)
T TIGR02024 220 YLEEKNLVQVSMNLTNYEKTPLYRVFELIKMEAQRYGVPVVGSELVGLVPLKALLDVAAYYLR 282 (298)
T ss_pred eecCCCeEEEEeeccCCccCCHHHHHHHHHHHHHHhCCCccccEEecCcHHHHHHHHHHHHhc
Confidence 997 79999999999999999999999999999999999999999999999988 88876
No 2
>COG3643 Glutamate formiminotransferase [Amino acid transport and metabolism]
Probab=100.00 E-value=4.1e-106 Score=744.55 Aligned_cols=274 Identities=26% Similarity=0.417 Sum_probs=262.4
Q ss_pred cccceeeeccccccCCHHHHHHHHHHHhhCCCeEEEeecCCCCCCcceEEEeeccccCCCCCcccchHHHHHHHHHHHHH
Q 020781 18 QSILVCCKLFISESRNLAALDAIERAARLDTETVIVNKFEDRIYNRARYTLVSYVVHDSTGTAIYSPLRQTIIAMADAAY 97 (321)
Q Consensus 18 ~~~lveCvpN~SEGR~~~vie~I~~a~~~~~gv~LLd~~~D~dyNRtv~T~vG~~~~p~~~~~~~~~v~eaa~~~~~~A~ 97 (321)
|++||||+||||||||+++||.|++++++.|+|+|||+.+|++||||||||+| +|+ .+.+|+|++++.|.
T Consensus 1 m~kivecvpNfSEG~~~~~ie~i~a~~~~~~~v~ildve~danhNRsViT~vg---dp~-------~~~~A~f~~ik~Aa 70 (302)
T COG3643 1 MMKIVECVPNFSEGRDLEKIEKIVAAAKSIPTVKILDVEMDANHNRSVITLVG---DPS-------KVVNAAFALIKKAA 70 (302)
T ss_pred CccceeeccCccccccHHHHHHHHHHHhcCCceEEEEeccCCCCCceEEEEec---ChH-------HHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999 466 89999999999999
Q ss_pred HhcCCCCCccCCCCCccccceeceeCCCCCHHHHHHHHHHHHHHHhhhcCCcEeeeccc--CCCCCChHHHhhhcCccCC
Q 020781 98 GAINLETHSGAHPRLGVVDDIVFHPLARASLDEAAWLAKAVAADIGSRFQVPVFLYAAA--HPTGKPLDTIRRELGYYRP 175 (321)
Q Consensus 98 elIDm~~H~G~HPR~GavDviPf~Pl~~~t~eec~~lA~~lg~~ig~~l~vPVyLYg~A--~p~rr~La~iRr~~G~f~~ 175 (321)
++|||++|+|+||||||+|||||+||.++|||||+++||.+|+++|++||||||||+++ +|+|++|++||| |
T Consensus 71 elIDM~~H~GeHpRmGA~DViPfvPl~d~tteecveiske~gkrvgeelgiPVylYe~aatrp~R~~La~IRk--g---- 144 (302)
T COG3643 71 ELIDMRNHKGEHPRMGAADVIPFVPLKDTTTEECVEISKELGKRVGEELGIPVYLYEDAATRPERQNLADIRK--G---- 144 (302)
T ss_pred HhhchhccCCCCCCCCccceeceeecccccHHHHHHHHHHHHHHhhHhhCCcEEEehhhccCcccccHHHHhh--h----
Confidence 99999999999999999999999999999999999999999999999999999999976 899999999999 8
Q ss_pred CCCCCcccCCCCC-CCCCCCCCCCCCCCCCCCCeeeecCCCCeEEeeeeecCCCHHHHHHHHHHhccCCCCCCCceEeee
Q 020781 176 NSMGNQWAGWTMP-EILPERPNEGPIQVSPARGIAMIGARPWVALYNIPIMSTDVAATRRIARMVSARGGGLPTVQTLGL 254 (321)
Q Consensus 176 ~~~~~~~~g~~~~-~~~~~~PD~GP~~~~p~~Gat~vGAr~~liayNV~L~t~dl~~Ar~IA~~vR~~gGGL~~VqAmgl 254 (321)
||||+.++ +++.|+|||||+++||++|+|+||||.|||||||||+|+|++|+++||++||.++|||++|||+|+
T Consensus 145 -----qyE~l~ekikep~WaPDfGp~~~~PtaG~t~iGaR~pLiAfNvNL~t~n~eI~kkIakaiR~s~GG~~~vkAi~~ 219 (302)
T COG3643 145 -----QYEGLKEKIKEPKWAPDFGPREVHPTAGVTAIGARMPLIAFNVNLDTSNMEIGKKIAKAIRFSSGGLRFVKAIAV 219 (302)
T ss_pred -----hhhhHHHHhcCcccCCCCCccccCCCCcceEeecccceEEEEeccCcccchHHHHHHHHHhhcCCCeeeeeeeee
Confidence 77788888 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeC-CCcEEEEeecCCCCCCCHHHHHHHHHHHHHHcCCceeeeeccCCChHHH----HHHHHH
Q 020781 255 VHG-EDSTEIACMLLEPNQVGADRVQNRVEKLAAEEGLDVEKGYFTDFSPEMI----VEKYMN 312 (321)
Q Consensus 255 ~~~-~g~~qVS~NL~d~~~t~~~~V~e~v~~~A~~~Gv~V~~~y~~~f~~~~i----le~~l~ 312 (321)
.+. ++++||||||+||++||+||+||+|+.+|.||||.|+++.++|+.|.|- +++||+
T Consensus 220 ~L~dk~~vQVSMN~~ny~KtpiyR~fEtiK~EA~Rygv~vv~sEivGl~P~~aL~d~~~yYL~ 282 (302)
T COG3643 220 ELKDKGIVQVSMNMTNYEKTPIYRVFETIKMEANRYGVNVVGSEIVGLVPEQALIDVAKYYLQ 282 (302)
T ss_pred eeccCCeEEEEEeecccccCcHHHHHHHHHHHHHhcCCCcccceEeccchHHHHHHHHHHHHh
Confidence 964 8999999999999999999999999999999999999998888888753 445554
No 3
>PF07837 FTCD_N: Formiminotransferase domain, N-terminal subdomain; InterPro: IPR012886 The formiminotransferase (FT) domain of formiminotransferase-cyclodeaminase (FTCD) forms a homodimer, with each protomer being comprised of two subdomains. The formiminotransferase domain has an N-terminal subdomain that is made up of a six-stranded mixed beta-pleated sheet and five alpha helices, which are arranged on the external surface of the beta sheet. This, in turn, faces the beta-sheet of the C-terminal subdomain to form a double beta-sheet layer. The two subdomains are separated by a short linker sequence, which is not thought to be any more flexible than the remainder of the molecule. The substrate is predicted to form a number of contacts with residues found in both the N-terminal and C-terminal subdomains []. This entry represents the N-terminal subdomain of the formiminotransferase domain.; GO: 0005542 folic acid binding, 0016740 transferase activity, 0008152 metabolic process; PDB: 2PFD_C 1QD1_B.
Probab=100.00 E-value=7e-77 Score=530.35 Aligned_cols=175 Identities=37% Similarity=0.586 Sum_probs=142.8
Q ss_pred cceeeeccccccCCHHHHHHHHHHHhhCCCeEEEeecCCCCCCcceEEEeeccccCCCCCcccchHHHHHHHHHHHHHHh
Q 020781 20 ILVCCKLFISESRNLAALDAIERAARLDTETVIVNKFEDRIYNRARYTLVSYVVHDSTGTAIYSPLRQTIIAMADAAYGA 99 (321)
Q Consensus 20 ~lveCvpN~SEGR~~~vie~I~~a~~~~~gv~LLd~~~D~dyNRtv~T~vG~~~~p~~~~~~~~~v~eaa~~~~~~A~el 99 (321)
||+|||||||||||+++||+|++++++++|++|||+|+|+|||||||||+|+ |+ +|.+|+|+++++|+++
T Consensus 1 klveCvpN~SEgR~~~~ie~I~~a~~~~~gv~ll~~~~D~~~NRsv~T~vG~---p~-------~v~~a~~~~~~~A~~~ 70 (178)
T PF07837_consen 1 KLVECVPNFSEGRDKEVIEAIAKAARNVPGVKLLDVFSDADYNRSVITLVGE---PE-------AVAEAAFAAIRKALEL 70 (178)
T ss_dssp -EEEE--EES-SSSHHHHHHHHHHCCTSTTEEEEEEEEETTTTEEEEEEEE----HH-------HHHHHHHHHHHHHHCC
T ss_pred CeEEEeeeeccCCCHHHHHHHHHHHHcCCCCEEEecCCCCCCCCCeEEEeeC---hH-------HHHHHHHHHHHHHHHh
Confidence 6999999999999999999999999999999999999999999999999996 44 8999999999999999
Q ss_pred cCCCCCccCCCCCccccceeceeCCCCCHHHHHHHHHHHHHHHhhhcCCcEeeec--ccCCCCCChHHHhhhcCccCCCC
Q 020781 100 INLETHSGAHPRLGVVDDIVFHPLARASLDEAAWLAKAVAADIGSRFQVPVFLYA--AAHPTGKPLDTIRRELGYYRPNS 177 (321)
Q Consensus 100 IDm~~H~G~HPR~GavDviPf~Pl~~~t~eec~~lA~~lg~~ig~~l~vPVyLYg--~A~p~rr~La~iRr~~G~f~~~~ 177 (321)
|||++|+|+|||||||||||||||+++||+||+++|+++|++||++|+||||||| +++|+|++|++||| |
T Consensus 71 IDm~~H~G~HPRlGavDvipf~Pl~~~t~eec~~~A~~~g~~i~~~l~vPVyLYg~aA~~p~r~~L~~iRr--g------ 142 (178)
T PF07837_consen 71 IDMRKHSGEHPRLGAVDVIPFIPLSGVTMEECAELARELGERIGEELGVPVYLYGEAAAHPERRNLADIRR--G------ 142 (178)
T ss_dssp --GGG---SS--SCSEEEEEEEEEES--HHHHHHHHHHHHHHHHHHHT--EEEEETT-SSCCCSSHHHHCT--T------
T ss_pred cchhcccCCCCCCCccceeeeeeCCCCCHHHHHHHHHHHHHHHHHhhCCCEEEehhhhCCcccCcHHHHHH--H------
Confidence 9999999999999999999999999999999999999999999999999999999 44999999999999 8
Q ss_pred CCCcccCCCCC-CCCCCCCCCCCCCCCCCCCeeeecCCC
Q 020781 178 MGNQWAGWTMP-EILPERPNEGPIQVSPARGIAMIGARP 215 (321)
Q Consensus 178 ~~~~~~g~~~~-~~~~~~PD~GP~~~~p~~Gat~vGAr~ 215 (321)
||+|+.++ ++++|+|||||+++||++|+|+||||+
T Consensus 143 ---e~e~l~~~~~~~~w~PD~Gp~~~~~~~Gat~vGAr~ 178 (178)
T PF07837_consen 143 ---EYEGLKEKIKDPEWAPDFGPAEFHPTAGATAVGARK 178 (178)
T ss_dssp ---CCCCHHHHTTSCCC--SBS-S---TTTB-EEEEE-S
T ss_pred ---HHHhhhhhccCCCCCCCCCCCCCCCCCCeEEEeecC
Confidence 55555544 788999999999999999999999995
No 4
>PF02971 FTCD: Formiminotransferase domain; InterPro: IPR013802 The formiminotransferase (FT) domain of formiminotransferase-cyclodeaminase (FTCD) forms a homodimer, with each protomer being comprised of two subdomains. The formiminotransferase domain has an N-terminal subdomain that is made up of a six-stranded mixed beta-pleated sheet and five alpha helices, which are arranged on the external surface of the beta sheet. This, in turn, faces the beta-sheet of the C-terminal subdomain to form a double beta-sheet layer. The two subdomains are separated by a short linker sequence, which is not thought to be any more flexible than the remainder of the molecule. The substrate is predicted to form a number of contacts with residues found in both the N-terminal and C-terminal subdomains []. In humans, deficiency of this enzyme results in a disease phenotype []. This entry represents the C-terminal subdomain of the formiminotransferase domain.; GO: 0005542 folic acid binding, 0016740 transferase activity, 0008152 metabolic process; PDB: 1QD1_B 2PFD_C.
Probab=99.97 E-value=6.8e-32 Score=233.99 Aligned_cols=91 Identities=22% Similarity=0.387 Sum_probs=77.9
Q ss_pred CeEEeeeeecCCCHHHHHHHHHHhccCC------CCCCCceEeeeeeC-CCcEEEEeecCCCCCCCHHHHHHHHHHHHHH
Q 020781 216 WVALYNIPIMSTDVAATRRIARMVSARG------GGLPTVQTLGLVHG-EDSTEIACMLLEPNQVGADRVQNRVEKLAAE 288 (321)
Q Consensus 216 ~liayNV~L~t~dl~~Ar~IA~~vR~~g------GGL~~VqAmgl~~~-~g~~qVS~NL~d~~~t~~~~V~e~v~~~A~~ 288 (321)
|||||||||+++| ++||+||+.||++| |||++||||||+++ +|++||||||+||++||+|+|||+|+++|++
T Consensus 1 FLIAyNVnLl~T~-~iA~~IA~~iR~sgrg~~~PGgl~~VkAiG~~l~~~~~aQVSmNltd~~~Tpl~~vfe~v~~eA~~ 79 (145)
T PF02971_consen 1 FLIAYNVNLLTTK-EIAKKIAKAIRESGRGKDQPGGLKYVKAIGWYLEERGIAQVSMNLTDYEKTPLHRVFEEVKREAAR 79 (145)
T ss_dssp --EEEEEEESS-H-HHHHHHHHHHCTTTTCTTC--SCTTEEEEEEEETTTTEEEEEEEES-TTTS-HHHHHHHHHHHHHC
T ss_pred CeEEEEeccCCcH-HHHHHHHHHHHhcCCCCCCCCCcceeeEeEEeeccCCeeEEEEeeecCCCCcHHHHHHHHHHHHHH
Confidence 7999999999988 99999999999999 99999999999976 7999999999999999999999999999999
Q ss_pred cCCceeeeeccCCChHHHH
Q 020781 289 EGLDVEKGYFTDFSPEMIV 307 (321)
Q Consensus 289 ~Gv~V~~~y~~~f~~~~il 307 (321)
|||+|+++++.|+.|.+.|
T Consensus 80 ~Gv~v~gsElVGlvP~~Al 98 (145)
T PF02971_consen 80 YGVPVVGSELVGLVPLDAL 98 (145)
T ss_dssp TT--EEEEEEES-B-HHHH
T ss_pred hCCCccceEEEccccHHHH
Confidence 9999999999999998644
No 5
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=58.15 E-value=1.2e+02 Score=30.44 Aligned_cols=144 Identities=22% Similarity=0.304 Sum_probs=87.4
Q ss_pred eeCCCCCHHHHHHHHHHHHHHHhhhcCCcEeeecccCCCCCChHHHhhhcCccCCCCCCCcccCCCCCCCCCCCCCC---
Q 020781 121 HPLARASLDEAAWLAKAVAADIGSRFQVPVFLYAAAHPTGKPLDTIRRELGYYRPNSMGNQWAGWTMPEILPERPNE--- 197 (321)
Q Consensus 121 ~Pl~~~t~eec~~lA~~lg~~ig~~l~vPVyLYg~A~p~rr~La~iRr~~G~f~~~~~~~~~~g~~~~~~~~~~PD~--- 197 (321)
.++..-.+++|.+--+.--+..|-+ -++|.|-.|+-+-..+++|=|++ .+ ..||.
T Consensus 37 ~~veHpaLd~~~~G~~~aLk~~G~~--n~~i~~~na~~~~~~a~~iarql------------~~--------~~~dviv~ 94 (322)
T COG2984 37 QFVEHPALDAAREGVKEALKDAGYK--NVKIDYQNAQGDLGTAAQIARQL------------VG--------DKPDVIVA 94 (322)
T ss_pred EeecchhHHHHHHHHHHHHHhcCcc--CeEEEeecCCCChHHHHHHHHHh------------hc--------CCCcEEEe
Confidence 3344456888888766666666643 78999999988888888888842 21 12232
Q ss_pred --CCCC---CCCC-------CCee-eecCCC--CeEE--eeeeecCCCHHHHHHHHHHhccCCCCCCCceEeeeeeCCCc
Q 020781 198 --GPIQ---VSPA-------RGIA-MIGARP--WVAL--YNIPIMSTDVAATRRIARMVSARGGGLPTVQTLGLVHGEDS 260 (321)
Q Consensus 198 --GP~~---~~p~-------~Gat-~vGAr~--~lia--yNV~L~t~dl~~Ar~IA~~vR~~gGGL~~VqAmgl~~~~g~ 260 (321)
+|.. .+.+ +++| .+||+- -+-. =||+-.++-+.++++|... --=||++|.+|+...
T Consensus 95 i~tp~Aq~~~s~~~~iPVV~aavtd~v~a~Lv~~~~~pg~NvTGvsD~~~v~q~i~li----k~~~Pnak~Igv~Y~--- 167 (322)
T COG2984 95 IATPAAQALVSATKTIPVVFAAVTDPVGAKLVKSLEQPGGNVTGVSDLLPVAQQIELI----KALLPNAKSIGVLYN--- 167 (322)
T ss_pred cCCHHHHHHHHhcCCCCEEEEccCchhhccCCccccCCCCceeecCCcchHHHHHHHH----HHhCCCCeeEEEEeC---
Confidence 1210 0011 1222 444442 0111 4666555545566666521 112799999998753
Q ss_pred EEEEeecCCCCCCCHHHHHHHHHHHHHHcCCceeeeeccCCC
Q 020781 261 TEIACMLLEPNQVGADRVQNRVEKLAAEEGLDVEKGYFTDFS 302 (321)
Q Consensus 261 ~qVS~NL~d~~~t~~~~V~e~v~~~A~~~Gv~V~~~y~~~f~ 302 (321)
+...-.-...|+++++|+..|+.|+..++++..
T Consensus 168 ---------p~E~ns~~l~eelk~~A~~~Gl~vve~~v~~~n 200 (322)
T COG2984 168 ---------PGEANSVSLVEELKKEARKAGLEVVEAAVTSVN 200 (322)
T ss_pred ---------CCCcccHHHHHHHHHHHHHCCCEEEEEecCccc
Confidence 233344567899999999999999998876554
No 6
>PRK13365 protocatechuate 4,5-dioxygenase subunit beta; Provisional
Probab=55.61 E-value=41 Score=32.41 Aligned_cols=70 Identities=20% Similarity=0.101 Sum_probs=49.8
Q ss_pred CCCHHHHHHHHHHhccCCCCCCCceEeeeeeC--------C---C-----cEEEEeecCCCCCCCH---HHHHHHHHHHH
Q 020781 226 STDVAATRRIARMVSARGGGLPTVQTLGLVHG--------E---D-----STEIACMLLEPNQVGA---DRVQNRVEKLA 286 (321)
Q Consensus 226 t~dl~~Ar~IA~~vR~~gGGL~~VqAmgl~~~--------~---g-----~~qVS~NL~d~~~t~~---~~V~e~v~~~A 286 (321)
..|.++|++|++.++++|=.+...+.++|.|+ . + .|+|++|..-....++ ++.=+.|++.+
T Consensus 95 ~g~~eLA~~i~~~~~~~g~~~~~~~~~~lDHG~~vPL~~l~~~~~~~~~pvVpi~in~~~~p~~~~~~~~~lG~al~~~i 174 (279)
T PRK13365 95 RGDVQLQAHIAECLVNDEFDLTVFQDKPIDHGCAAPLPLLWPHVPDWPGTVVPIAINVLQYPLPTARRCYRLGQALRRAI 174 (279)
T ss_pred CCCHHHHHHHHHHHHHcCCCeeeccCCCCCchhhhHHHHhCCccccCCCCeEEEEEecccCCCCCHHHHHHHHHHHHHHH
Confidence 46889999999999987766666667777765 1 2 6899999776656566 45556677766
Q ss_pred HHc----CCceee
Q 020781 287 AEE----GLDVEK 295 (321)
Q Consensus 287 ~~~----Gv~V~~ 295 (321)
+++ +|-|++
T Consensus 175 ~~~~~d~rV~iIa 187 (279)
T PRK13365 175 ESYPEDLRVVVVG 187 (279)
T ss_pred HhcCcCCCEEEEE
Confidence 554 566665
No 7
>COG3808 OVP1 Inorganic pyrophosphatase [Energy production and conversion]
Probab=50.63 E-value=9.4 Score=40.73 Aligned_cols=30 Identities=17% Similarity=0.222 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHhhCCCeEEEeecCCCCCCcce
Q 020781 34 LAALDAIERAARLDTETVIVNKFEDRIYNRAR 65 (321)
Q Consensus 34 ~~vie~I~~a~~~~~gv~LLd~~~D~dyNRtv 65 (321)
-+++|++.+.+|..|| ++.--.+|||+|+|
T Consensus 550 ~~vV~EVRRQfRE~PG--imegk~kPdY~R~V 579 (703)
T COG3808 550 MEVVEEVRRQFREIPG--IMEGKAKPDYGRCV 579 (703)
T ss_pred HHHHHHHHHHHhhCCc--cccCCcCCchhHHH
Confidence 5789999999999999 89999999999986
No 8
>COG4937 Predicted regulatory domain of prephenate dehydrogenase [Translation, ribosomal structure and biogenesis]
Probab=47.64 E-value=38 Score=30.65 Aligned_cols=60 Identities=10% Similarity=0.069 Sum_probs=50.1
Q ss_pred cchhhhhccccceeeeccccccCCHHHHHHHHHHHhhCCCeEEEeecCCCC---CCcceEEEe
Q 020781 10 NKNKKIANQSILVCCKLFISESRNLAALDAIERAARLDTETVIVNKFEDRI---YNRARYTLV 69 (321)
Q Consensus 10 ~~~~~~~~~~~lveCvpN~SEGR~~~vie~I~~a~~~~~gv~LLd~~~D~d---yNRtv~T~v 69 (321)
.+||..-+..+..---.-|+++-|+++|-..+...+..-.+.++|++.++. -.|-++||-
T Consensus 73 r~wk~e~L~~~v~DvSvlf~~~vDpEvil~avkllk~~vd~~I~DvY~G~~i~ede~~siT~R 135 (171)
T COG4937 73 RKWKKEHLEKKVIDVSVLFKKDVDPEVILNAVKLLKKMVDIEIIDVYEGEKIEEDEYKSITFR 135 (171)
T ss_pred HHHHHHhhheEEEEEEEEecCCCCHHHHHhHHHhhhheeEEEEEEeecCCcCCCCceeeEEEE
Confidence 478888888899988899999999999999888888888999999996532 137777774
No 9
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=44.27 E-value=1.3e+02 Score=22.43 Aligned_cols=65 Identities=14% Similarity=0.251 Sum_probs=45.2
Q ss_pred HHHHHHHHHhccCCCCCCCceEeeeee---CCCcEEEEeecCCCCCCCHHHHHHHHHHHHHHcCCcee
Q 020781 230 AATRRIARMVSARGGGLPTVQTLGLVH---GEDSTEIACMLLEPNQVGADRVQNRVEKLAAEEGLDVE 294 (321)
Q Consensus 230 ~~Ar~IA~~vR~~gGGL~~VqAmgl~~---~~g~~qVS~NL~d~~~t~~~~V~e~v~~~A~~~Gv~V~ 294 (321)
-+-.+|++.+.+.+.-+..++...... +.+.....+.+.=+...++.++.+.++.+++++|+.+.
T Consensus 11 Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~~l~~~l~~l~~~~~~~~~ 78 (81)
T cd04869 11 GIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALPAGTDLDALREELEELCDDLNVDIS 78 (81)
T ss_pred CHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecCCCCCHHHHHHHHHHHHHHhcceEE
Confidence 455679999999998888777765542 12333333333334456899999999999999998653
No 10
>TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF. This protein family, which exhibits an RNAse H fold in crystal structure, has been proposed as a putative Holliday junction resolvase, an alternate to RuvC.
Probab=43.98 E-value=28 Score=29.80 Aligned_cols=39 Identities=28% Similarity=0.363 Sum_probs=30.6
Q ss_pred eeceeCC-CCCHHHHHHHHHHHHHHHhhhcCCcEeeeccc
Q 020781 118 IVFHPLA-RASLDEAAWLAKAVAADIGSRFQVPVFLYAAA 156 (321)
Q Consensus 118 iPf~Pl~-~~t~eec~~lA~~lg~~ig~~l~vPVyLYg~A 156 (321)
+==+|+. +-|..+-...++.++++|..++++||+|+-+.
T Consensus 53 VvGlP~~~dG~~~~~a~~v~~f~~~L~~~~~~~v~~~DEr 92 (130)
T TIGR00250 53 VVGLPLNMDGTEGPLTERAQKFANRLEGRFGVPVVLWDER 92 (130)
T ss_pred EEeccCCCCcCcCHHHHHHHHHHHHHHHHhCCCEEEEcCC
Confidence 3335665 55666677889999999999999999999765
No 11
>cd07359 PCA_45_Doxase_B_like Subunit B of the Class III Extradiol dioxygenase, Protocatechuate 4,5-dioxygenase, and simlar enzymes. This subfamily of class III extradiol dioxygenases consists of a number of proteins with known enzymatic activities: Protocatechuate (PCA) 4,5-dioxygenase (LigAB), 2,3-dihydroxyphenylpropionate 1,2-dioxygenase (MhpB), 3-O-Methylgallate Dioxygenase, 2-aminophenol 1,6-dioxygenase, as well as proteins without any known enzymatic activity. These proteins play essential roles in the degradation of aromatic compounds by catalyzing the incorporation of both atoms of molecular oxygen into their preferred substrates. As members of the Class III extradiol dioxygenase family, the enzymes use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like class III enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model repres
Probab=43.92 E-value=71 Score=30.01 Aligned_cols=70 Identities=14% Similarity=0.054 Sum_probs=42.6
Q ss_pred CCHHHHHHHHHHhccCCCCCCCceEeeeeeC-------------CCcEEEEeecCCCCCCCHHHHHHHHHH---HHHH--
Q 020781 227 TDVAATRRIARMVSARGGGLPTVQTLGLVHG-------------EDSTEIACMLLEPNQVGADRVQNRVEK---LAAE-- 288 (321)
Q Consensus 227 ~dl~~Ar~IA~~vR~~gGGL~~VqAmgl~~~-------------~g~~qVS~NL~d~~~t~~~~V~e~v~~---~A~~-- 288 (321)
.|.++|++|++.++..|==......+++.|+ --+||||||...+..-++.+.++.-+. .+++
T Consensus 92 ~d~elA~~i~~~~~~~g~~~a~~~~~~lDHg~~vpL~~l~~~~~~pvVpvsv~~~~~~~~~~~~~~~lG~aL~~~i~~~~ 171 (271)
T cd07359 92 GDADLARHLLAGLVEDGFDVAFSYELRLDHGITVPLHFLDPDNDVPVVPVLVNCVTPPLPSLRRCYALGRALRRAIESFP 171 (271)
T ss_pred CCHHHHHHHHHHHHHcCCCeeccCCCCCCcchhhHHHHhcCCCCCCEEEEEecccCCCCCCHHHHHHHHHHHHHHHHhcC
Confidence 6789999999888764321222223445554 136899999887655566655554444 4443
Q ss_pred --cCCceeee
Q 020781 289 --EGLDVEKG 296 (321)
Q Consensus 289 --~Gv~V~~~ 296 (321)
.+|-|+++
T Consensus 172 ~d~rV~iIaS 181 (271)
T cd07359 172 GDLRVAVLGT 181 (271)
T ss_pred CCCcEEEEec
Confidence 46767653
No 12
>cd07364 PCA_45_Dioxygenase_B Subunit B of the Class III extradiol dioxygenase, Protocatechuate 4,5-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of protocatechuate. Protocatechuate 4,5-dioxygenase (LigAB) catalyzes the oxidization and subsequent ring-opening of protocatechuate (or 3,4-dihydroxybenzoic acid, PCA), an intermediate in the breakdown of lignin and other compounds. Protocatechuate 4,5-dioxygenase is an aromatic ring opening dioxygenase belonging to the class III extradiol enzyme family, a group of enyzmes that cleaves aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon using a non-heme Fe(II). LigAB is composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. The B subunit (LigB) is the catalytic subunit of LigAB.
Probab=42.84 E-value=83 Score=30.31 Aligned_cols=70 Identities=10% Similarity=0.095 Sum_probs=46.3
Q ss_pred CCCHHHHHHHHHHhccCCCCCCCceEeeeeeC--------C---C-----cEEEEeecCCCCCCCHHHHHH---HHHHHH
Q 020781 226 STDVAATRRIARMVSARGGGLPTVQTLGLVHG--------E---D-----STEIACMLLEPNQVGADRVQN---RVEKLA 286 (321)
Q Consensus 226 t~dl~~Ar~IA~~vR~~gGGL~~VqAmgl~~~--------~---g-----~~qVS~NL~d~~~t~~~~V~e---~v~~~A 286 (321)
..|-++|++|++.+++.|=-...++.++|.|+ . + .||||+|...+...++.+.++ .|++++
T Consensus 95 ~g~~~LA~~i~~~~~~~g~~~~~~~~~~lDHG~~vPL~~l~p~~~~~p~pVV~vsvn~~~~p~~~~~~~~~lG~al~~~i 174 (277)
T cd07364 95 QGHPDLAWHIAQSLILDDFDMTIVNEMDVDHGLTVPLSIMYGQPEAWPCKVIPLCVNVVQYPQPTGKRCFALGKAIRRAV 174 (277)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEecCCCCCCcchhhhHHHhCCccccCCCCeEEEEeccCCCCCCCHHHHHHHHHHHHHHH
Confidence 56889999999999886533334445666665 1 2 489999988776666666664 455554
Q ss_pred HH----cCCceee
Q 020781 287 AE----EGLDVEK 295 (321)
Q Consensus 287 ~~----~Gv~V~~ 295 (321)
++ .+|-|++
T Consensus 175 ~~~~rd~rV~iIa 187 (277)
T cd07364 175 ESYDEDLKVAIWG 187 (277)
T ss_pred HhcCcCCCEEEEe
Confidence 43 4466665
No 13
>PRK14637 hypothetical protein; Provisional
Probab=41.36 E-value=35 Score=30.22 Aligned_cols=71 Identities=15% Similarity=0.184 Sum_probs=43.2
Q ss_pred HHHhcCCCCCcc-CCCCCccc-cceeceeCCCCCHHHHHHHHHHHHHHHhhhcCCcEeeecccCCC-C---CChHHHhhh
Q 020781 96 AYGAINLETHSG-AHPRLGVV-DDIVFHPLARASLDEAAWLAKAVAADIGSRFQVPVFLYAAAHPT-G---KPLDTIRRE 169 (321)
Q Consensus 96 A~elIDm~~H~G-~HPR~Gav-DviPf~Pl~~~t~eec~~lA~~lg~~ig~~l~vPVyLYg~A~p~-r---r~La~iRr~ 169 (321)
-+++.|++-... .++-+=++ |. | .++|+++|.++++.|...|-..+...-|.-|=++|- - +...+.||-
T Consensus 22 g~eLvdve~~~~~~~~~lrV~ID~----~-~gV~iddC~~vSr~Is~~LD~~~~~~~y~LEVSSPGldRpL~~~~~f~r~ 96 (151)
T PRK14637 22 GCKLVDLSRRVQQAQGRVRAVIYS----A-GGVGLDDCARVHRILVPRLEALGGVRDVFLEVSSPGIERVIKNAAEFSIF 96 (151)
T ss_pred CCEEEEEEEEecCCCcEEEEEEEC----C-CCCCHHHHHHHHHHHHHHhcccccccCcEEEEeCCCCCCCCCCHHHHHHh
Confidence 456666665443 22222222 42 2 579999999999999998865444445655655554 2 445666665
Q ss_pred cC
Q 020781 170 LG 171 (321)
Q Consensus 170 ~G 171 (321)
.|
T Consensus 97 ~G 98 (151)
T PRK14637 97 VG 98 (151)
T ss_pred CC
Confidence 55
No 14
>cd07363 45_DOPA_Dioxygenase The Class III extradiol dioxygenase, 4,5-DOPA Dioxygenase, catalyzes the incorporation of both atoms of molecular oxygen into 4,5-dihydroxy-phenylalanine. This subfamily is composed of plant 4,5-DOPA Dioxygenase, the uncharacterized Escherichia coli protein Jw3007, and similar proteins. 4,5-DOPA Dioxygenase catalyzes the incorporation of both atoms of molecular oxygen into 4,5-dihydroxy-phenylalanine (4,5-DOPA). The reaction results in the opening of the cyclic ring between carbons 4 and 5 and producing an unstable seco-DOPA that rearranges to betalamic acid. 4,5-DOPA Dioxygenase is a key enzyme in the biosynthetic pathway of the plant pigment betalain. Homologs of DODA are present not only in betalain-producing plants but also in bacteria and archaea. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated ca
Probab=39.45 E-value=58 Score=30.58 Aligned_cols=72 Identities=17% Similarity=0.183 Sum_probs=45.9
Q ss_pred eeeeec-CCCHHHHHHHHHHhccCCCCCCCceEeeeeeC----------C---CcEEEEeecCCCCCCCHHHHH---HHH
Q 020781 220 YNIPIM-STDVAATRRIARMVSARGGGLPTVQTLGLVHG----------E---DSTEIACMLLEPNQVGADRVQ---NRV 282 (321)
Q Consensus 220 yNV~L~-t~dl~~Ar~IA~~vR~~gGGL~~VqAmgl~~~----------~---g~~qVS~NL~d~~~t~~~~V~---e~v 282 (321)
|.|... ..|.++|++|++.+++.|==......++|.|+ + -+||||+|... ++.+.+ +.+
T Consensus 70 y~~~y~~~g~~eLa~~i~~~l~~~gi~~~~~~~~~lDHG~~vPL~~~~p~~~iPvV~isi~~~~----~~~~~~~lG~aL 145 (253)
T cd07363 70 YEIQYPAPGSPELAERVAELLKAAGIPARLDPERGLDHGAWVPLKLMYPDADIPVVQLSLPASL----DPAEHYALGRAL 145 (253)
T ss_pred eeccCCCCCCHHHHHHHHHHHHhcCCCccccCCcCCcccHHHHHHHHcCCCCCcEEEEEecCCC----CHHHHHHHHHHH
Confidence 444443 37889999999999975433333445777776 1 47999999772 344444 445
Q ss_pred HHHHHHcCCceeee
Q 020781 283 EKLAAEEGLDVEKG 296 (321)
Q Consensus 283 ~~~A~~~Gv~V~~~ 296 (321)
++ +.+.+|-|+++
T Consensus 146 ~~-l~~~~v~ii~S 158 (253)
T cd07363 146 AP-LRDEGVLIIGS 158 (253)
T ss_pred Hh-hhhCCEEEEec
Confidence 44 33457877763
No 15
>COG0779 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.03 E-value=43 Score=30.01 Aligned_cols=70 Identities=20% Similarity=0.417 Sum_probs=45.7
Q ss_pred HHhcCCCCCc-cCCCCCccc-cceeceeCCCCCHHHHHHHHHHHHHHHhhhcCCc-EeeecccCCC-CCCh---HHHhhh
Q 020781 97 YGAINLETHS-GAHPRLGVV-DDIVFHPLARASLDEAAWLAKAVAADIGSRFQVP-VFLYAAAHPT-GKPL---DTIRRE 169 (321)
Q Consensus 97 ~elIDm~~H~-G~HPR~Gav-DviPf~Pl~~~t~eec~~lA~~lg~~ig~~l~vP-VyLYg~A~p~-rr~L---a~iRr~ 169 (321)
+++.|.+-+. |.++.+=+. |- | +++|+++|.++++.+...+=.+-.++ -|+-|=++|- -|+| .+-+|-
T Consensus 23 ~ELv~ve~~~~~~~~~lrI~id~----~-g~v~lddC~~vSr~is~~LD~edpi~~~Y~LEVSSPGldRpL~~~~~f~r~ 97 (153)
T COG0779 23 FELVDVEFVKEGRDSVLRIYIDK----E-GGVTLDDCADVSRAISALLDVEDPIEGAYFLEVSSPGLDRPLKTAEHFARF 97 (153)
T ss_pred cEEEEEEEEEcCCCcEEEEEeCC----C-CCCCHHHHHHHHHHHHHHhccCCcccccEEEEeeCCCCCCCcCCHHHHHHh
Confidence 3555665555 445544332 21 2 78999999999999999888777788 5555777776 4444 444453
Q ss_pred cC
Q 020781 170 LG 171 (321)
Q Consensus 170 ~G 171 (321)
.|
T Consensus 98 ~G 99 (153)
T COG0779 98 IG 99 (153)
T ss_pred cC
Confidence 44
No 16
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=37.69 E-value=50 Score=31.78 Aligned_cols=82 Identities=15% Similarity=0.253 Sum_probs=57.1
Q ss_pred cCCCHHHHHHHHHHhcc---CCCCCCCceEeeeeeCCCcEEEEeecCCCCCCCHHHHHHHHHHHHHHcCCcee-------
Q 020781 225 MSTDVAATRRIARMVSA---RGGGLPTVQTLGLVHGEDSTEIACMLLEPNQVGADRVQNRVEKLAAEEGLDVE------- 294 (321)
Q Consensus 225 ~t~dl~~Ar~IA~~vR~---~gGGL~~VqAmgl~~~~g~~qVS~NL~d~~~t~~~~V~e~v~~~A~~~Gv~V~------- 294 (321)
...+.++.++|.+.+.- -|||++..+......+-|..-|-. -|-..+=.+.+++++++||-+|.
T Consensus 60 ~~~n~~~i~~i~~~~~~~vQvGGGIRs~~~v~~ll~~G~~rVii------Gt~av~~p~~v~~~~~~~g~rivv~lD~r~ 133 (241)
T COG0106 60 GPRNLEAIKEILEATDVPVQVGGGIRSLEDVEALLDAGVARVII------GTAAVKNPDLVKELCEEYGDRIVVALDARD 133 (241)
T ss_pred CcccHHHHHHHHHhCCCCEEeeCCcCCHHHHHHHHHCCCCEEEE------ecceecCHHHHHHHHHHcCCcEEEEEEccC
Confidence 45678999999999974 499999999888886545443332 22223334678888888985554
Q ss_pred -----eee--ccCCChHHHHHHHHH
Q 020781 295 -----KGY--FTDFSPEMIVEKYMN 312 (321)
Q Consensus 295 -----~~y--~~~f~~~~ile~~l~ 312 (321)
.|| .+++++.+++++...
T Consensus 134 g~vav~GW~e~s~~~~~~l~~~~~~ 158 (241)
T COG0106 134 GKVAVSGWQEDSGVELEELAKRLEE 158 (241)
T ss_pred CccccccccccccCCHHHHHHHHHh
Confidence 234 578888888887654
No 17
>PRK14643 hypothetical protein; Provisional
Probab=34.37 E-value=50 Score=29.71 Aligned_cols=75 Identities=8% Similarity=0.106 Sum_probs=44.1
Q ss_pred HHHhcCCCCCccCCCC-Cccc-cceeceeCCCCCHHHHHHHHHHHHHHHhhhcCCcEeee-cccCCC-CCC---hHHHhh
Q 020781 96 AYGAINLETHSGAHPR-LGVV-DDIVFHPLARASLDEAAWLAKAVAADIGSRFQVPVFLY-AAAHPT-GKP---LDTIRR 168 (321)
Q Consensus 96 A~elIDm~~H~G~HPR-~Gav-DviPf~Pl~~~t~eec~~lA~~lg~~ig~~l~vPVyLY-g~A~p~-rr~---La~iRr 168 (321)
-+++.|++.+....+. +=+. |. |..|=+++|+++|..+++.++..|=.+-.+|-.+| |=++|- .|. ..+.+|
T Consensus 23 G~eL~die~~~~~~~~~lrV~Id~-~~~~~ggvtldDC~~vSr~is~~LD~~d~i~~~Y~LEVSSPGleRpL~~~~df~r 101 (164)
T PRK14643 23 NLKVYEINNLKEFENDMIQILVED-ILQANKPLDFDILIKANDLVSNKIDQFIKTSEKYLLEISSSGIEKQIRSQEELVK 101 (164)
T ss_pred CCEEEEEEEEecCCCcEEEEEEec-CCCcCCCcCHHHHHHHHHHHHHHhCccCCCCCCeEEEecCCCCCCCCCCHHHHHH
Confidence 4567777766544433 1111 10 00123569999999999999999886545665554 555665 344 445555
Q ss_pred hcC
Q 020781 169 ELG 171 (321)
Q Consensus 169 ~~G 171 (321)
-.|
T Consensus 102 ~~G 104 (164)
T PRK14643 102 ALN 104 (164)
T ss_pred hcC
Confidence 444
No 18
>PF07823 CPDase: Cyclic phosphodiesterase-like protein; InterPro: IPR012386 2',3' Cyclic nucleotide phosphodiesterases (CPDases) are enzymes that catalyse at least two distinct steps in the splicing of tRNA introns in eukaryotes. The active site is characterised by two conserved histidine residues []. The enzyme has six cysteine residues, four of which are involved in forming two intra-molecular disulphide bridges. One of these bridges is involved in the catalytic activity of the enzyme as it opens when CPDase is semi-reduced []. Proteins in this entryand belong to 3.1.4.37 from EC and catalyse the reaction Nucleoside 2',3'-cyclic phosphate + H2O = nucleoside 2'-phosphate. ; GO: 0004112 cyclic-nucleotide phosphodiesterase activity; PDB: 1JH7_A 1JH6_B 1FSI_B.
Probab=33.53 E-value=61 Score=29.49 Aligned_cols=101 Identities=14% Similarity=0.050 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHhhCC----CeEEEeecCCCCCCcceEEEeeccccCCCCCcccchHHHHHHHHHHHHHHhcCCCCCccCC
Q 020781 34 LAALDAIERAARLDT----ETVIVNKFEDRIYNRARYTLVSYVVHDSTGTAIYSPLRQTIIAMADAAYGAINLETHSGAH 109 (321)
Q Consensus 34 ~~vie~I~~a~~~~~----gv~LLd~~~D~dyNRtv~T~vG~~~~p~~~~~~~~~v~eaa~~~~~~A~elIDm~~H~G~H 109 (321)
..+++++..+.+..+ -+++-++..+..|-|++|--+... | . +..+.+.+.++.+-......
T Consensus 56 ~~~L~~~~~~~~~~~~~~~~v~~~~v~~g~~yfq~vyl~v~~t--~--------~----L~~l~~~~r~~~~~~~~~~~- 120 (196)
T PF07823_consen 56 QKVLDSAAAALKPLPKNHFTVRFDKVASGDKYFQCVYLEVEKT--P--------E----LMSLAQIARELFVEGPPDEV- 120 (196)
T ss_dssp HHHHHHHHHH-B-E-----EEEEEEEEEEEETTEEEEEEE-----H--------H----HHHHHCHHHHCT---------
T ss_pred HHHHHHHHHhccCcccceeEEEeeeEeeCCeEEEEEEEEecCC--h--------h----HHHHHHHHHHHhhhcccccc-
Confidence 345555555555553 678899999999999999998852 1 2 44555555555543322221
Q ss_pred CCCccccceeceeC-----CCCCHHHHHHHHHHHHHHHhhhcCCcEe
Q 020781 110 PRLGVVDDIVFHPL-----ARASLDEAAWLAKAVAADIGSRFQVPVF 151 (321)
Q Consensus 110 PR~GavDviPf~Pl-----~~~t~eec~~lA~~lg~~ig~~l~vPVy 151 (321)
+-+--+.-||.|. ++.+.+|- +.++.+.+++.+.|++..-
T Consensus 121 -~~~~~~~~~y~PHlSLlY~d~~~~e~-~~~~~~~~~i~~~l~~~~~ 165 (196)
T PF07823_consen 121 -KAAEWPREPYMPHLSLLYGDLPPEEK-AEAAEIAQRIDDALGVDSG 165 (196)
T ss_dssp ---T----S----EEEEE-----HHHH-HHHHHHHHHH-TT------
T ss_pred -ccccccCCCCCCeEEEEEcCCCcccH-HHHHHHHHHhccccccccc
Confidence 2233344455553 46666666 6677889999988876654
No 19
>cd07320 Extradiol_Dioxygenase_3B_like Subunit B of Class III Extradiol ring-cleavage dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site of the aromatic ring. Intradiol enzymes cleave the aromatic ring between two hydroxyl groups, whereas extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Extradiol dioxygenases can be further divided into three classes. Class I and II enzymes are evolutionary related and show sequence similarity, with the two-domain class II enzymes evolving from the class I enzyme through gene duplication. Class III enzymes are different in sequence and structure and usually have two subunits, designated A and B. This model represents the catalytic subunit B of extradiol dioxygenase class
Probab=32.88 E-value=3.9e+02 Score=24.53 Aligned_cols=63 Identities=17% Similarity=0.168 Sum_probs=35.9
Q ss_pred CCHHHHHHHHHHhccCCCCCCCceE---eeeeeC----------C----CcEEEEeecCCCCCCCHHHHHHHHHHHHH--
Q 020781 227 TDVAATRRIARMVSARGGGLPTVQT---LGLVHG----------E----DSTEIACMLLEPNQVGADRVQNRVEKLAA-- 287 (321)
Q Consensus 227 ~dl~~Ar~IA~~vR~~gGGL~~VqA---mgl~~~----------~----g~~qVS~NL~d~~~t~~~~V~e~v~~~A~-- 287 (321)
.|.++|++|++..++ + ++.... .++.|+ . -+|+|++|... .++.+.++.-+.++.
T Consensus 81 ~d~ela~~l~~~~~~-~--~~~~~~~~~~~~DHg~~vpl~~l~~~~~~~piVpi~i~~~~---~~~~~~~~lG~aL~~~~ 154 (260)
T cd07320 81 GDPDLAWEIAEELIK-E--IPVTIVNEMDGLDHGTLVPLSYIFGDPWDFKVIPLSVGVLV---PPFAKLFEFGKAIRAAV 154 (260)
T ss_pred CCHHHHHHHHHHHHh-c--CCEEEEcccccCCeeecccHHHHhCCCCCCcEEEEEeeccC---CCHHHHHHHHHHHHHHH
Confidence 578999999988765 3 322211 133333 1 47899998874 345665554444443
Q ss_pred ---HcCCceee
Q 020781 288 ---EEGLDVEK 295 (321)
Q Consensus 288 ---~~Gv~V~~ 295 (321)
..++-|+.
T Consensus 155 ~~~~~~vliI~ 165 (260)
T cd07320 155 EPSDLRVHVVA 165 (260)
T ss_pred HhcCCcEEEEE
Confidence 22555554
No 20
>PRK14633 hypothetical protein; Provisional
Probab=32.77 E-value=57 Score=28.77 Aligned_cols=71 Identities=14% Similarity=0.216 Sum_probs=41.7
Q ss_pred HHHhcCCCCCccCCCCCccc-cceeceeCCCCCHHHHHHHHHHHHHHHhhhcCCcE-eeecccCCC-C---CChHHHhhh
Q 020781 96 AYGAINLETHSGAHPRLGVV-DDIVFHPLARASLDEAAWLAKAVAADIGSRFQVPV-FLYAAAHPT-G---KPLDTIRRE 169 (321)
Q Consensus 96 A~elIDm~~H~G~HPR~Gav-DviPf~Pl~~~t~eec~~lA~~lg~~ig~~l~vPV-yLYg~A~p~-r---r~La~iRr~ 169 (321)
-+++.|++-....++.+=+. |. | .++|+++|.+++|.|+..+=.+-.+|= |.-+=++|- - ++..+.+|-
T Consensus 18 G~eL~dve~~~~~~~~lrV~ID~----~-~Gv~lddC~~vSr~i~~~LD~~d~i~~~Y~LEVSSPGldRpL~~~~~f~r~ 92 (150)
T PRK14633 18 GYILWGIEVVGSGKLTIRIFIDH----E-NGVSVDDCQIVSKEISAVFDVEDPVSGKYILEVSSPGMNRQIFNIIQAQAL 92 (150)
T ss_pred CCEEEEEEEEeCCCcEEEEEEeC----C-CCCCHHHHHHHHHHHHHHhccCcCCCCCeEEEEeCCCCCCCCCCHHHHHHh
Confidence 45667776654322222211 21 2 579999999999999998864434454 333555555 3 445556664
Q ss_pred cC
Q 020781 170 LG 171 (321)
Q Consensus 170 ~G 171 (321)
.|
T Consensus 93 ~G 94 (150)
T PRK14633 93 VG 94 (150)
T ss_pred CC
Confidence 45
No 21
>cd07949 PCA_45_Doxase_B_like_1 The B subunit of unknown Class III extradiol dioxygenases with similarity to Protocatechuate 4,5-dioxygenase. This subfamily is composed of proteins of unknown function with similarity to the B subunit of Protocatechuate 4,5-dioxygenase (LigAB). LigAB belongs to the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Dioxygenases play key roles in the degradation of aromatic compounds. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the catalytic subunit, B.
Probab=32.45 E-value=1.6e+02 Score=28.39 Aligned_cols=70 Identities=7% Similarity=0.013 Sum_probs=46.0
Q ss_pred CCCHHHHHHHHHHhccCCCCCCCceEeeeeeCC-----------C----cEEEEeecCCCCCCCH---HHHHHHHHHHHH
Q 020781 226 STDVAATRRIARMVSARGGGLPTVQTLGLVHGE-----------D----STEIACMLLEPNQVGA---DRVQNRVEKLAA 287 (321)
Q Consensus 226 t~dl~~Ar~IA~~vR~~gGGL~~VqAmgl~~~~-----------g----~~qVS~NL~d~~~t~~---~~V~e~v~~~A~ 287 (321)
..|.++|++|++.+.+.|==+.....++|.|+- + .||||+|..-+...++ ++.=+.|++.+.
T Consensus 95 ~g~~~LA~~i~~~~~~~g~d~~~~~~~~lDHG~~vPL~~l~~~~d~~~pvV~i~~n~~~~p~~~~~~~~~lG~al~~~i~ 174 (276)
T cd07949 95 KGDPELSWHLIESLVEDEFDITTCQEMLVDHACTLPMQLFWPGAEWPIKVVPVSINTVQHPLPSPKRCFKLGQAIGRAIE 174 (276)
T ss_pred CCCHHHHHHHHHHHHHcCCCeeccCCCCCCcchhhHHHHhcCccCCCCCEEEEEeccCCCCCCCHHHHHHHHHHHHHHHH
Confidence 367899999999998754323334566776651 1 5899999875556666 444456666655
Q ss_pred Hc----CCceee
Q 020781 288 EE----GLDVEK 295 (321)
Q Consensus 288 ~~----Gv~V~~ 295 (321)
++ +|-+++
T Consensus 175 ~~~~d~rv~iia 186 (276)
T cd07949 175 SYPEDLRVVVLG 186 (276)
T ss_pred hcCcCCCEEEEE
Confidence 43 566665
No 22
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=32.44 E-value=59 Score=28.11 Aligned_cols=36 Identities=25% Similarity=0.335 Sum_probs=28.4
Q ss_pred eeCC-CCCHHHHHHHHHHHHHHHhhhcCCcEeeeccc
Q 020781 121 HPLA-RASLDEAAWLAKAVAADIGSRFQVPVFLYAAA 156 (321)
Q Consensus 121 ~Pl~-~~t~eec~~lA~~lg~~ig~~l~vPVyLYg~A 156 (321)
.|+. +-+..+-...++.++++|.+.+++||+|+-+.
T Consensus 62 lP~~~~G~~~~~~~~v~~f~~~L~~~~~~~v~~~DEr 98 (138)
T PRK00109 62 LPLNMDGTEGPRTERARKFANRLEGRFGLPVVLVDER 98 (138)
T ss_pred ccCCCCCCcCHHHHHHHHHHHHHHHHhCCCEEEEcCC
Confidence 4554 55555667788899999998899999999875
No 23
>COG3852 NtrB Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms]
Probab=32.06 E-value=70 Score=32.39 Aligned_cols=49 Identities=20% Similarity=0.476 Sum_probs=38.0
Q ss_pred CCCHHHHHHHHHHHHHH---cCCceeeee---ccCC--ChHHHHHHHHHHHhhhhcC
Q 020781 272 QVGADRVQNRVEKLAAE---EGLDVEKGY---FTDF--SPEMIVEKYMNLINATANA 320 (321)
Q Consensus 272 ~t~~~~V~e~v~~~A~~---~Gv~V~~~y---~~~f--~~~~ile~~l~~~~~~~~~ 320 (321)
-+.+|.|.|.|+.++.- .+|...+-| +..+ ++||+++.-++++.+.+.|
T Consensus 200 ~~NIH~VLerV~~lv~~e~~~~i~l~rdYDPSLP~v~~d~DqliQv~LNlVrNAaqA 256 (363)
T COG3852 200 PVNIHEVLERVRALVEAEFADNVRLIRDYDPSLPEVLGDRDQLIQVFLNLVRNAAQA 256 (363)
T ss_pred cchHHHHHHHHHHHHhcccCCceEEeecCCCCCccccCCHHHHHHHHHHHHHHHHHH
Confidence 55799999999999874 356777778 5554 6889999988888776644
No 24
>cd07368 PhnC_Bs_like PhnC is a Class III Extradiol ring-cleavage dioxygenase involved in the polycyclic aromatic hydrocarbon (PAH) catabolic pathway. This subfamily is composed of Burkholderia sp. PhnC and similar poteins. PhnC is one of nine protein products encoded by the phn locus. These proteins are involved in the polycyclic aromatic hydrocarbon (PAH) catabolic pathway. PhnC is a member of the class III extradiol dioxygenase family, a group os enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the catalytic subunit, B.
Probab=31.74 E-value=1.4e+02 Score=28.71 Aligned_cols=71 Identities=8% Similarity=0.023 Sum_probs=45.4
Q ss_pred CCCHHHHHHHHHHhccCCCCCCCceEeeeeeC--------CC----------cEEEEeecCCCCCCCHHHHHHHHHHHHH
Q 020781 226 STDVAATRRIARMVSARGGGLPTVQTLGLVHG--------ED----------STEIACMLLEPNQVGADRVQNRVEKLAA 287 (321)
Q Consensus 226 t~dl~~Ar~IA~~vR~~gGGL~~VqAmgl~~~--------~g----------~~qVS~NL~d~~~t~~~~V~e~v~~~A~ 287 (321)
..|.++|++|++.+...|==....+.+++.|+ .. .+.|++|+.=+...++.+.++.=+.+++
T Consensus 92 ~g~~eLA~~i~~~l~~~g~~~~~~~~~~lDHG~~vPL~~l~~~~~~~~~~~p~VPV~~n~~~~p~~~~~~~~~lG~al~~ 171 (277)
T cd07368 92 ENNEPLAHHIMQHGLEYGIDWAVARSFTVDHAATIPIHLAVRPVRAKGKGMRAIPVYLATGVDPFITSWRAHELGRVIGA 171 (277)
T ss_pred cCCHHHHHHHHHHHHHcCCCEeeecCcCCCcchhccHHHHhCcccccCCCCCeEEEEEecccCCCCCHHHHHHHHHHHHH
Confidence 35779999999999874321223344556665 12 5789998874445677777765555554
Q ss_pred -------HcCCceeee
Q 020781 288 -------EEGLDVEKG 296 (321)
Q Consensus 288 -------~~Gv~V~~~ 296 (321)
+.+|-|+++
T Consensus 172 ai~~~~~d~rVliIaS 187 (277)
T cd07368 172 AVEAWQGDERVAIIGS 187 (277)
T ss_pred HHHhcCCCCCEEEEEc
Confidence 457777753
No 25
>PRK03011 butyrate kinase; Provisional
Probab=30.71 E-value=54 Score=32.81 Aligned_cols=47 Identities=15% Similarity=0.140 Sum_probs=30.9
Q ss_pred ceeceeCCCCCHHHHHHHHHHHHHHHhhhcCCcEeeeccc-C---CC---CCChHHHhhhcC
Q 020781 117 DIVFHPLARASLDEAAWLAKAVAADIGSRFQVPVFLYAAA-H---PT---GKPLDTIRRELG 171 (321)
Q Consensus 117 viPf~Pl~~~t~eec~~lA~~lg~~ig~~l~vPVyLYg~A-~---p~---rr~La~iRr~~G 171 (321)
.+|+.|+.+. +.-+|.++++++++|+|.+-.+ + |+ ...|+.|||++|
T Consensus 99 ~~~~~~~~nl--------~~~~a~~~~~~~~~p~~v~D~~~~~~~~~~a~~~~lp~i~R~~g 152 (358)
T PRK03011 99 GKYGEHASNL--------GAIIAYEIAKELGIPAFIVDPVVVDEMEPVARISGLPEIERKSI 152 (358)
T ss_pred cCCCCCCCCH--------HHHHHHHHHHhcCCCEEEECCcccccCCHHHHHcCCCCcceeec
Confidence 4556666655 3336666666779999999865 2 22 456778887665
No 26
>PRK08508 biotin synthase; Provisional
Probab=29.66 E-value=2.6e+02 Score=26.59 Aligned_cols=87 Identities=18% Similarity=0.118 Sum_probs=49.7
Q ss_pred CCCHHHHHHHHHHhccCCCCCCCceEeeeee--------CCCcEEEEeecCC-----CCCCC---HHHHHHHHHHHHHHc
Q 020781 226 STDVAATRRIARMVSARGGGLPTVQTLGLVH--------GEDSTEIACMLLE-----PNQVG---ADRVQNRVEKLAAEE 289 (321)
Q Consensus 226 t~dl~~Ar~IA~~vR~~gGGL~~VqAmgl~~--------~~g~~qVS~NL~d-----~~~t~---~~~V~e~v~~~A~~~ 289 (321)
..+++.-..|.+.||+.+-++.-+=..|... +-|.--+..||.- +++.+ ..++.+.++. |++.
T Consensus 71 ~~~~e~~~ei~~~ik~~~p~l~i~~s~G~~~~e~l~~Lk~aGld~~~~~lEt~~~~~~~i~~~~~~~~~l~~i~~-a~~~ 149 (279)
T PRK08508 71 DKKLEYVAEAAKAVKKEVPGLHLIACNGTASVEQLKELKKAGIFSYNHNLETSKEFFPKICTTHTWEERFQTCEN-AKEA 149 (279)
T ss_pred cccHHHHHHHHHHHHhhCCCcEEEecCCCCCHHHHHHHHHcCCCEEcccccchHHHhcCCCCCCCHHHHHHHHHH-HHHc
Confidence 3467788888888887653332111122211 1133233333321 12233 4556666655 7899
Q ss_pred CCceeeeeccCC--ChHHHHHHHHHH
Q 020781 290 GLDVEKGYFTDF--SPEMIVEKYMNL 313 (321)
Q Consensus 290 Gv~V~~~y~~~f--~~~~ile~~l~~ 313 (321)
|+.|..+-+.|+ |++++++....+
T Consensus 150 Gi~v~sg~I~GlGEt~ed~~~~l~~l 175 (279)
T PRK08508 150 GLGLCSGGIFGLGESWEDRISFLKSL 175 (279)
T ss_pred CCeecceeEEecCCCHHHHHHHHHHH
Confidence 999999988776 677887766554
No 27
>KOG0968 consensus DNA polymerase zeta, catalytic subunit [Replication, recombination and repair]
Probab=28.42 E-value=1.2e+02 Score=35.65 Aligned_cols=86 Identities=21% Similarity=0.254 Sum_probs=61.5
Q ss_pred CCCCCcceEEEeeccccCCCCCcccchHHHHHHHHHHH----HHHhcCCCCCccCCCCCccccceeceeCCCCCHHHHHH
Q 020781 58 DRIYNRARYTLVSYVVHDSTGTAIYSPLRQTIIAMADA----AYGAINLETHSGAHPRLGVVDDIVFHPLARASLDEAAW 133 (321)
Q Consensus 58 D~dyNRtv~T~vG~~~~p~~~~~~~~~v~eaa~~~~~~----A~elIDm~~H~G~HPR~GavDviPf~Pl~~~t~eec~~ 133 (321)
..-|-=|.-.|-|..++. .|+++.+.-.|. |++.|+=..--|.-==-|=+|- =|+=|.|+|.+||-+
T Consensus 1083 NVTYGYTsA~FSGRMPCa--------ElADsIV~~GRETLEraIe~Vn~~d~w~AkVVYGDTDS-mFVlL~GaT~eeAF~ 1153 (1488)
T KOG0968|consen 1083 NVTYGYTSANFSGRMPCA--------ELADSIVQKGRETLERAIEMVNRGDYWGAKVVYGDTDS-MFVLLPGATVEEAFE 1153 (1488)
T ss_pred hccccccccccCCCCchH--------HHHHHHHHhhHHHHHHHHHHHhcCCcCCeEEEEcCCCc-eEEEecCccHHHHHH
Confidence 444555555566665553 377777776665 5555554444444444466675 499999999999999
Q ss_pred HHHHHHHHHhhhcCCcEee
Q 020781 134 LAKAVAADIGSRFQVPVFL 152 (321)
Q Consensus 134 lA~~lg~~ig~~l~vPVyL 152 (321)
+-+++|++|.+...=||+|
T Consensus 1154 IGq~iAe~VT~~NP~PV~L 1172 (1488)
T KOG0968|consen 1154 IGQEIAEAVTNSNPKPVVL 1172 (1488)
T ss_pred HHHHHHHHHHhcCCCCeEE
Confidence 9999999999998899977
No 28
>cd07055 BMC_like_2 Bacterial Micro-Compartment (BMC)-like domain 2. BMC like 2 domains exist in cyanobacteria, proteobacteria, and actinobacteria and are homologs of carboxysome shell proteins. They might be encoded from putative organelles involved in unknown metabolic process. Although it has been suggested that these carboxysome shell protein homologs form hexamers and further assemble into the flat facets of the polyhedral bacterial organelles shell at present no experimental evidence exists to directly support this view.
Probab=26.42 E-value=2.5e+02 Score=21.71 Aligned_cols=37 Identities=14% Similarity=0.122 Sum_probs=27.9
Q ss_pred HHHHHHHH--HhhCCCeEEEeecCCCCCCcceEEEeecc
Q 020781 36 ALDAIERA--ARLDTETVIVNKFEDRIYNRARYTLVSYV 72 (321)
Q Consensus 36 vie~I~~a--~~~~~gv~LLd~~~D~dyNRtv~T~vG~~ 72 (321)
++|.|..+ +.+..+|.++|.|..=+-|=..+-+.|+.
T Consensus 9 v~~~iiAaDiA~Kaa~V~i~d~f~gCPq~~~~l~i~Gdv 47 (61)
T cd07055 9 VIDMIYAADIAEKASGVFVSDIFGSCPQHMITLAIFGET 47 (61)
T ss_pred hhhHHHHHHHhhhccCeEEEEecCCCCCceEEEEEEecH
Confidence 45665544 45567999999999988888888888953
No 29
>cd07371 2A5CPDO_AB The alpha and beta subunits of the Class III extradiol dioxygenase, 2-amino-5-chlorophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol. This subfamily contains both alpha and beta subunits of 2-amino-5-chlorophenol 1,6-dioxygenase (2A5CPDO), which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, an intermediate during p-chloronitrobenzene degradation. 2A5CPDO is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. The active enzyme is probably a heterotetramer, composed of two alpha and two beta subunits. Alpha and beta subunits share significant sequence similarity and may have evolved by gene duplication.
Probab=26.06 E-value=1.4e+02 Score=28.43 Aligned_cols=66 Identities=15% Similarity=0.149 Sum_probs=42.0
Q ss_pred CCCHHHHHHHHHHhccCCCCCCCc----eEeeeeeC-----------C--CcEEEEeecCCCCCCCHHHHH---HHHHHH
Q 020781 226 STDVAATRRIARMVSARGGGLPTV----QTLGLVHG-----------E--DSTEIACMLLEPNQVGADRVQ---NRVEKL 285 (321)
Q Consensus 226 t~dl~~Ar~IA~~vR~~gGGL~~V----qAmgl~~~-----------~--g~~qVS~NL~d~~~t~~~~V~---e~v~~~ 285 (321)
..|.++|++|++.+++. |++.. ..++|.|+ . -.+|||+|... .++.+.+ +.+.+.
T Consensus 84 ~g~~eLA~~i~~~~~~~--gi~~~~~~~~~~~lDHG~~vPL~~l~p~~~ipvV~vs~~~~~---~~~~~~~~lG~al~~~ 158 (268)
T cd07371 84 NVDVELAEACVEEGRKA--GLVTRMMRYPRFPIDTGTITALTLMRPGTDIPPVVISANNLY---LSGEETEGEMDLAGKA 158 (268)
T ss_pred CCCHHHHHHHHHHHHHC--CCcEEEecCCCCCCCchhHHHHHHhcCCCCCCeEEEEecCcC---CCHHHHHHHHHHHHHH
Confidence 47889999999999865 44432 45656664 1 37899998763 3444444 445444
Q ss_pred HHH--cCCceeee
Q 020781 286 AAE--EGLDVEKG 296 (321)
Q Consensus 286 A~~--~Gv~V~~~ 296 (321)
.++ .+|-|+++
T Consensus 159 l~~~~~rv~iIgS 171 (268)
T cd07371 159 TRDAGKRVAVLGS 171 (268)
T ss_pred HHHcCCcEEEEEe
Confidence 466 45767653
No 30
>TIGR03341 YhgI_GntY IscR-regulated protein YhgI. IscR (TIGR02010) is an iron-sulfur cluster-binding transcriptional regulator (see Genome Property GenProp0138). Members of this protein family include YhgI, whose expression is under control of IscR, and show sequence similarity to IscA, a known protein of iron-sulfur cluster biosynthesis. These two lines of evidence strongly suggest a role as an iron-sulfur cluster biosynthesis protein. An older study designated this protein GntY and suggested a role for it and for the product of an adjacent gene, based on complementation studies, in gluconate utilization.
Probab=25.44 E-value=1.3e+02 Score=27.59 Aligned_cols=86 Identities=12% Similarity=0.071 Sum_probs=49.3
Q ss_pred ccceeeecccc--cc-CCHHHHHHHHHHHh-hC------C--CeEEEeecCCCCCCcceEEEeeccc-cCCCCCcccchH
Q 020781 19 SILVCCKLFIS--ES-RNLAALDAIERAAR-LD------T--ETVIVNKFEDRIYNRARYTLVSYVV-HDSTGTAIYSPL 85 (321)
Q Consensus 19 ~~lveCvpN~S--EG-R~~~vie~I~~a~~-~~------~--gv~LLd~~~D~dyNRtv~T~vG~~~-~p~~~~~~~~~v 85 (321)
..++-=.||.+ +- -+.+..++|.+++. .+ + .+.|+++..| +...+.|-|... +|.+.. .+
T Consensus 86 ~gF~f~NPna~~~~~~~~~~~~~~i~~~l~~~irP~l~~dGGdielv~v~~~---~~v~v~l~GaC~gC~~s~~----Tl 158 (190)
T TIGR03341 86 GQLTLKAPNAKMPKVADDAPLEERINYVLQSEINPQLASHGGKVTLVEITDD---GVAVLQFGGGCNGCSMVDV----TL 158 (190)
T ss_pred ceeEEeCCccCCCcCccchHHHHHHHHHHHhccCHHHHhcCCceEEEEEcCC---CEEEEEEeecCCCCcchHH----HH
Confidence 34444456643 11 24446777777765 22 2 4999999855 344566777533 444111 45
Q ss_pred HHHHHHHHHHHH----HhcCCCCCc-cCCCC
Q 020781 86 RQTIIAMADAAY----GAINLETHS-GAHPR 111 (321)
Q Consensus 86 ~eaa~~~~~~A~----elIDm~~H~-G~HPR 111 (321)
++.+-.+.+..+ +.++.+.|. |.||-
T Consensus 159 ~~~ie~~l~~~~p~v~~V~~~~~~~~~~~~~ 189 (190)
T TIGR03341 159 KDGVEKTLLERFPELKGVRDATDHTRGEHSY 189 (190)
T ss_pred HHHHHHHHHHhCCCcceEEEecCccccCCCC
Confidence 555555555554 677888887 88883
No 31
>cd08060 MPN_UPF0172 Mov34/MPN/PAD-1 family: UPF0172 family of unknown function includes neighbor of COX4 (Noc4p). This family includes Noc4p (neighbor of COX4; neighbor of Cytochrome c Oxidase 4; nucleolar complex associated 4 homolog) which belongs to the family of unknown function, UPF0172, with MPN/JAMM-like domains. Proteins in this family are homologs of the NOC4 gene which is conserved in eukaryotic members including human, dog, mouse, rat, chicken, zebrafish, fruit fly, mosquito, S.pombe, K.lactis, E.gossypii, M.grisea, N.crassa, A.thaliana, and rice. NOC4 highly expressed in the pancreas and moderately in liver, heart, lung, kidney, brain, skeletal muscle, and placenta. This nucleolar protein forms a complex with Nop14p that mediates maturation and nuclear export of 40S ribosomal subunits. This family of eukaryotic MPN-like domains lacks the key residues that coordinate a metal ion and therefore does not show catalytic isopeptidase activity.
Probab=24.42 E-value=1.6e+02 Score=26.73 Aligned_cols=46 Identities=20% Similarity=0.168 Sum_probs=32.6
Q ss_pred CCCCCHH-HHHHHHHHHHHHcCCceeeee-----ccCCChHHHHHHHHHHHh
Q 020781 270 PNQVGAD-RVQNRVEKLAAEEGLDVEKGY-----FTDFSPEMIVEKYMNLIN 315 (321)
Q Consensus 270 ~~~t~~~-~V~e~v~~~A~~~Gv~V~~~y-----~~~f~~~~ile~~l~~~~ 315 (321)
+..+|.. -.+..|++.|+..|+.++|+| +.+.+++.+-++...++.
T Consensus 48 ~~l~P~~Eval~~ve~~~~~~gl~IvG~Yhsh~~~~d~~~~~~a~kIadki~ 99 (182)
T cd08060 48 LALAPMLEVALALVDAYCKSSGLVIVGYYQANERLDDSSPSPVAKKIADKIA 99 (182)
T ss_pred cccCHHHHHHHHHHHHHHHHCCCEEEEEEecCCcccCCCCcHHHHHHHHHHH
Confidence 4455553 358999999999999999999 345566666655554443
No 32
>TIGR02298 HpaD_Fe 3,4-dihydroxyphenylacetate 2,3-dioxygenase. This enzyme catalyzes the ring-opening step in the degradation of 4-hydroxyphenylacetate.
Probab=24.20 E-value=1.9e+02 Score=27.87 Aligned_cols=67 Identities=21% Similarity=0.209 Sum_probs=42.3
Q ss_pred CCHHHHHHHHHHhccCCCCCCC----ceEeeeeeCC-------------CcEEEEeecCCCCCCCHHHHHHHHHHHHHHc
Q 020781 227 TDVAATRRIARMVSARGGGLPT----VQTLGLVHGE-------------DSTEIACMLLEPNQVGADRVQNRVEKLAAEE 289 (321)
Q Consensus 227 ~dl~~Ar~IA~~vR~~gGGL~~----VqAmgl~~~~-------------g~~qVS~NL~d~~~t~~~~V~e~v~~~A~~~ 289 (321)
.|.++|++|++..++. |++. -..++|.|+- -.||||+|....+.--.++.=+.++++++++
T Consensus 94 gd~eLA~~i~~~~~~~--gi~~~~~~~~~~~lDHG~~vPL~~l~p~~~ipvV~is~~~~~~~~~~~~~lG~al~~~i~~~ 171 (282)
T TIGR02298 94 GNPALGQLIADEAQEH--GVKTLAHQVPSLGLEYGTLVPMRYMNEDGHFKVVSIAAWCTVHDIEESRALGEAIRKAIEQS 171 (282)
T ss_pred CCHHHHHHHHHHHHHC--CCceeeccCCCCCCCeehHhHHHHhCCCCCCcEEEEeecCCCCCHHHHHHHHHHHHHHHHhc
Confidence 6789999999999854 4442 2456676651 4689999844333333355556677766554
Q ss_pred --CCceee
Q 020781 290 --GLDVEK 295 (321)
Q Consensus 290 --Gv~V~~ 295 (321)
+|-|++
T Consensus 172 ~~rV~iIa 179 (282)
T TIGR02298 172 DGRVAVLA 179 (282)
T ss_pred CCCEEEEE
Confidence 455554
No 33
>PRK14635 hypothetical protein; Provisional
Probab=24.03 E-value=1.1e+02 Score=27.29 Aligned_cols=69 Identities=17% Similarity=0.229 Sum_probs=39.3
Q ss_pred HHHHhcCCCCCc-cCCCCCccc-cceeceeCCCCCHHHHHHHHHHHHHHHhhhcCCcEeeecccCCC-CCChH
Q 020781 95 AAYGAINLETHS-GAHPRLGVV-DDIVFHPLARASLDEAAWLAKAVAADIGSRFQVPVFLYAAAHPT-GKPLD 164 (321)
Q Consensus 95 ~A~elIDm~~H~-G~HPR~Gav-DviPf~Pl~~~t~eec~~lA~~lg~~ig~~l~vPVyLYg~A~p~-rr~La 164 (321)
.-+++.|++-+. |.++.+=+. |.-- .+=+++|+++|.++++.++..|=..-...-|.-|=++|- -|+|-
T Consensus 18 ~g~el~dve~~~~~~~~~lrV~ID~~~-~~~~gv~lddC~~vSr~is~~LD~~d~~~~Y~LEVSSPGldRpL~ 89 (162)
T PRK14635 18 LPVKLYSLKVNQRPNHSLIEVVLDNLE-HPYGSVSLLECEQVSRKLKEELERISPDLDFTLKVSSAGAERKLR 89 (162)
T ss_pred CCCEEEEEEEEecCCCcEEEEEEecCC-CCCCCcCHHHHHHHHHHHHHHhCCCCCCCCeEEEEcCCCCCCcCC
Confidence 456777777544 334333222 2100 012579999999999999998864222234555655665 44443
No 34
>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair]
Probab=23.68 E-value=94 Score=27.43 Aligned_cols=40 Identities=30% Similarity=0.410 Sum_probs=29.1
Q ss_pred ceeceeCC-CCCHHHHHHHHHHHHHHHhhhcCCcEeeeccc
Q 020781 117 DIVFHPLA-RASLDEAAWLAKAVAADIGSRFQVPVFLYAAA 156 (321)
Q Consensus 117 viPf~Pl~-~~t~eec~~lA~~lg~~ig~~l~vPVyLYg~A 156 (321)
++==.|+. +-+...-.+.++.++++|.+++++||.|--+.
T Consensus 57 vVVGlP~~m~g~~~~~~~~~~~f~~~L~~r~~lpv~l~DER 97 (141)
T COG0816 57 VVVGLPLNMDGTEGPRAELARKFAERLKKRFNLPVVLWDER 97 (141)
T ss_pred EEEecCcCCCCCcchhHHHHHHHHHHHHHhcCCCEEEEcCc
Confidence 33335663 32333377789999999999999999998654
No 35
>PRK14647 hypothetical protein; Provisional
Probab=23.32 E-value=1.2e+02 Score=26.97 Aligned_cols=70 Identities=19% Similarity=0.261 Sum_probs=42.4
Q ss_pred HHhcCCCCCc-cCCCCCccc-cceeceeCCCCCHHHHHHHHHHHHHHHhhhcCCc-EeeecccCCC-C---CChHHHhhh
Q 020781 97 YGAINLETHS-GAHPRLGVV-DDIVFHPLARASLDEAAWLAKAVAADIGSRFQVP-VFLYAAAHPT-G---KPLDTIRRE 169 (321)
Q Consensus 97 ~elIDm~~H~-G~HPR~Gav-DviPf~Pl~~~t~eec~~lA~~lg~~ig~~l~vP-VyLYg~A~p~-r---r~La~iRr~ 169 (321)
+++.|++-+. |.++.+=+. |. =.++|+++|..+++.++..+=.+-.+| -|.-+=++|- - +...+.+|-
T Consensus 23 ~~L~dv~~~~~~~~~~lrV~ID~-----~~gvslddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPG~~RpL~~~~~f~r~ 97 (159)
T PRK14647 23 LELVELEYKREGREMVLRLFIDK-----EGGVNLDDCAEVSRELSEILDVEDFIPERYTLEVSSPGLDRPLKKEADYERY 97 (159)
T ss_pred CEEEEEEEEecCCCeEEEEEEeC-----CCCCCHHHHHHHHHHHHHHHcccccCCCCeEEEEcCCCCCCcCCCHHHHHHh
Confidence 4577777664 344433332 32 257999999999999999886432344 3444655555 3 445555564
Q ss_pred cC
Q 020781 170 LG 171 (321)
Q Consensus 170 ~G 171 (321)
.|
T Consensus 98 ~G 99 (159)
T PRK14647 98 AG 99 (159)
T ss_pred CC
Confidence 44
No 36
>cd07362 HPCD_like Class III extradiol dioxygenases with similarity to homoprotocatechuate 2,3-dioxygenase, which catalyzes the key ring cleavage step in the metabolism of homoprotocatechuate. This subfamily of class III extradiol dioxygenases consists of two types of proteins with known enzymatic activities; 3,4-dihydroxyphenylacetate (homoprotocatechuate) 2,3-dioxygenase (HPCD) and 2-amino-5-chlorophenol 1,6-dioxygenase. HPCD catalyzes the key ring cleavage step in the metabolism of homoprotocatechuate (hpca), a central intermediate in the bacterial degradation of aromatic compounds. The enzyme incorporates both atoms of molecular oxygen into hpca, resulting in aromatic ring-opening to yield the product alpha-hydroxy-delta-carboxymethyl cis-muconic semialdehyde. 2-amino-5-chlorophenol 1,6-dioxygenase catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, which is an intermediate during p-chloronitrobenzene degradation. The enzyme is probably a heterotetrame
Probab=23.26 E-value=1.9e+02 Score=27.65 Aligned_cols=66 Identities=12% Similarity=0.043 Sum_probs=39.5
Q ss_pred CCCHHHHHHHHHHhccCCCCCCCc--e--EeeeeeCC-------------CcEEEEeecCCCCCCCHHHHH---HHHHHH
Q 020781 226 STDVAATRRIARMVSARGGGLPTV--Q--TLGLVHGE-------------DSTEIACMLLEPNQVGADRVQ---NRVEKL 285 (321)
Q Consensus 226 t~dl~~Ar~IA~~vR~~gGGL~~V--q--Amgl~~~~-------------g~~qVS~NL~d~~~t~~~~V~---e~v~~~ 285 (321)
..|.++|++|++.+++.| ++-. . .++|.|+- -.||||+|.. ..++.+.+ +.|.+.
T Consensus 89 ~g~~~LA~~i~~~l~~~G--i~~~~~~~~~~~lDHG~~vPL~~l~p~~~iPVV~vs~~~~---~~~~~~~~~lG~ai~~a 163 (272)
T cd07362 89 PGDPELGRLLVEEGQEAG--LRVKAVNDPTYIWDYGTVVPLRYLNPNKDIPVVSISACWT---AASLEESYTWGEVIGKA 163 (272)
T ss_pred CCCHHHHHHHHHHHHHcC--CceeeccCCCCCCCcchHHHHHHhCCCCCCcEEEEeccCC---CCCHHHHHHHHHHHHHH
Confidence 378899999999998743 3322 1 35666651 3689999875 23444444 223333
Q ss_pred HH--HcCCceeee
Q 020781 286 AA--EEGLDVEKG 296 (321)
Q Consensus 286 A~--~~Gv~V~~~ 296 (321)
.+ ..+|-|+++
T Consensus 164 l~~~~~rv~ii~S 176 (272)
T cd07362 164 LLESDKRVVFLAS 176 (272)
T ss_pred HHhhCCCEEEEEe
Confidence 33 356666653
No 37
>cd07367 CarBb CarBb is the B subunit of the Class III Extradiol ring-cleavage dioxygenase, 2-aminophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. CarBb is the B subunit of 2-aminophenol 1,6-dioxygenase (CarB), which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. It is a key enzyme in the carbazole degradation pathway isolated from bacterial strains with carbazole degradation ability. The enzyme is a heterotetramer composed of two A and two B subunits. CarB belongs to the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Although the enzyme was originally isolated as a meta-cleavage enzyme for 2'-aminobiphenyl-2,3-diol involved in carbazole degradation, it has also shown high specificity for 2,3-dihydroxybiphenyl.
Probab=22.99 E-value=3e+02 Score=26.18 Aligned_cols=70 Identities=14% Similarity=0.121 Sum_probs=45.8
Q ss_pred CCCHHHHHHHHHHhccCCCCCCCceEeeeeeC-------------CCcEEEEeecCCCCCCCHHHHH---HHHHHHHHH-
Q 020781 226 STDVAATRRIARMVSARGGGLPTVQTLGLVHG-------------EDSTEIACMLLEPNQVGADRVQ---NRVEKLAAE- 288 (321)
Q Consensus 226 t~dl~~Ar~IA~~vR~~gGGL~~VqAmgl~~~-------------~g~~qVS~NL~d~~~t~~~~V~---e~v~~~A~~- 288 (321)
..|.++|++|++.+++.|=-......++|.|+ --.||||+|.......++.+.+ +.|++++++
T Consensus 87 ~gd~~LA~~i~~~l~~~g~~~~~~~~~~lDHG~~vPL~~l~p~~~iPvV~isin~~~~p~~~~~~~~~lG~al~~~i~~~ 166 (268)
T cd07367 87 PGHREFARAFVRQAAEDGFDLAQAEELRPDHGVMVPLLFMGPKLDIPVVPLIVNINTDPAPSPRRCWALGKVLAQYVEKR 166 (268)
T ss_pred CCCHHHHHHHHHHHHHcCCCeeeecCccCCcchhchHHHhCCCCCCCEEEEEecccCCCCCCHHHHHHHHHHHHHHHHhc
Confidence 68899999999999987532333344566663 1468999999865555666654 456666554
Q ss_pred ----cCCceee
Q 020781 289 ----EGLDVEK 295 (321)
Q Consensus 289 ----~Gv~V~~ 295 (321)
.+|-|++
T Consensus 167 ~~~d~rV~iia 177 (268)
T cd07367 167 RPAGERVAVIA 177 (268)
T ss_pred CCCCCcEEEEE
Confidence 3455554
No 38
>PRK14631 hypothetical protein; Provisional
Probab=22.98 E-value=1.1e+02 Score=27.77 Aligned_cols=48 Identities=13% Similarity=0.342 Sum_probs=31.2
Q ss_pred CCCCHHHHHHHHHHHHHHHhhhcCCc-EeeecccCCC-CCC---hHHHhhhcC
Q 020781 124 ARASLDEAAWLAKAVAADIGSRFQVP-VFLYAAAHPT-GKP---LDTIRRELG 171 (321)
Q Consensus 124 ~~~t~eec~~lA~~lg~~ig~~l~vP-VyLYg~A~p~-rr~---La~iRr~~G 171 (321)
+++|+++|..+++.|+..|=.+--+| -|.-+=++|- -|+ ..+.+|-.|
T Consensus 65 ~gvtiddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPGldRpL~~~~df~r~~G 117 (174)
T PRK14631 65 RGIGVEDCVRVTQQVGAMLDVHDPISGEYALEVSSPGWDRPFFQLEQLQGYIG 117 (174)
T ss_pred CCcCHHHHHHHHHHHHHHhcccccCCCCeEEEEeCCCCCCcCCCHHHHHHhCC
Confidence 36999999999999999887443344 3444555555 344 445555334
No 39
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=22.95 E-value=3.2e+02 Score=20.18 Aligned_cols=62 Identities=11% Similarity=0.171 Sum_probs=42.3
Q ss_pred HHHHHHHHHHhccCCCCCCCceEeeeeeCCCc--EEEEeecCCCCCCCHHHHHHHHHHHHHHcCCc
Q 020781 229 VAATRRIARMVSARGGGLPTVQTLGLVHGEDS--TEIACMLLEPNQVGADRVQNRVEKLAAEEGLD 292 (321)
Q Consensus 229 l~~Ar~IA~~vR~~gGGL~~VqAmgl~~~~g~--~qVS~NL~d~~~t~~~~V~e~v~~~A~~~Gv~ 292 (321)
.-+-++|++.+.+.|+-+-.++.-- .+..+. +++.+++. ...+...++.+..+.++.++|+.
T Consensus 10 ~Giv~~it~~l~~~g~nI~~~~~~~-~~~~~~f~~~~~~~~~-~~~~~~~~l~~~l~~l~~~l~~~ 73 (74)
T cd04875 10 PGIVAAVSGFLAEHGGNIVESDQFV-DPDSGRFFMRVEFELE-GFDLSREALEAAFAPVAAEFDMD 73 (74)
T ss_pred CCHHHHHHHHHHHcCCCEEeeeeee-cCCCCeEEEEEEEEeC-CCCCCHHHHHHHHHHHHHHcCCc
Confidence 5677889999999999887776543 222333 33444432 22367899999999999988764
No 40
>PF03665 UPF0172: Uncharacterised protein family (UPF0172); InterPro: IPR005366 This is a small family of proteins of unknown function.
Probab=22.68 E-value=1.5e+02 Score=27.27 Aligned_cols=41 Identities=27% Similarity=0.353 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHcCCceeeee-----ccCCChHHHHHHHHHHHh
Q 020781 275 ADRVQNRVEKLAAEEGLDVEKGY-----FTDFSPEMIVEKYMNLIN 315 (321)
Q Consensus 275 ~~~V~e~v~~~A~~~Gv~V~~~y-----~~~f~~~~ile~~l~~~~ 315 (321)
+.-.+..|+..|+..|+.++|+| +.+.+++.+-++...++.
T Consensus 60 lEvAL~qvd~~~~~~gl~IvGyY~Ane~~~d~~~~~~a~kiad~I~ 105 (196)
T PF03665_consen 60 LEVALAQVDAYAKSNGLVIVGYYQANERLDDNSPSPVAEKIADKIA 105 (196)
T ss_pred HHHHHHHHHHHHhhCCCEEEEEEEeccccccCCCCHHHHHHHHHHH
Confidence 45567889999999999999999 456677777666555554
No 41
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=22.50 E-value=55 Score=28.20 Aligned_cols=36 Identities=31% Similarity=0.452 Sum_probs=24.6
Q ss_pred eeCC-CCCHHHHHHHHHHHHHHHhhhc-CCcEeeeccc
Q 020781 121 HPLA-RASLDEAAWLAKAVAADIGSRF-QVPVFLYAAA 156 (321)
Q Consensus 121 ~Pl~-~~t~eec~~lA~~lg~~ig~~l-~vPVyLYg~A 156 (321)
.|+. +-+..+-...++.+++.+.+++ ++||+|+-+.
T Consensus 59 lP~~~~G~~~~~~~~v~~f~~~L~~~~~~ipV~~~DEr 96 (135)
T PF03652_consen 59 LPLNMDGSESEQARRVRKFAEELKKRFPGIPVILVDER 96 (135)
T ss_dssp EEBBCTSSC-CCHHHHHHHHHHHHHHH-TSEEEEEECS
T ss_pred CCcccCCCccHHHHHHHHHHHHHHHhcCCCcEEEECCC
Confidence 4553 2333334556678888888888 9999999765
No 42
>PRK13366 protocatechuate 4,5-dioxygenase subunit beta; Provisional
Probab=22.42 E-value=3e+02 Score=26.79 Aligned_cols=75 Identities=13% Similarity=0.124 Sum_probs=47.8
Q ss_pred eeeecCCCHHHHHHHHHHhccCCCCCCCceEeeeeeC--------C--------CcEEEEeecCCCCCCCHHHHHH---H
Q 020781 221 NIPIMSTDVAATRRIARMVSARGGGLPTVQTLGLVHG--------E--------DSTEIACMLLEPNQVGADRVQN---R 281 (321)
Q Consensus 221 NV~L~t~dl~~Ar~IA~~vR~~gGGL~~VqAmgl~~~--------~--------g~~qVS~NL~d~~~t~~~~V~e---~ 281 (321)
||.=-..|.++|++|++.+.+.|==...++.++|.|+ . -.|+||+|..-+...++.+.++ .
T Consensus 90 ~v~~~~g~~eLA~~i~~~l~~~g~~~~~~~~~~lDHG~~vPL~~l~p~~~~~~ipvVpisvn~~~~p~~~~~r~~~lG~a 169 (284)
T PRK13366 90 PVPKVIGHPDLAAHIAQSVIQDDFDLTIVNKMDVDHGLTVPLSLMCGQPDAWPCPVIPFAVNVVQYPVPSGRRCFALGQA 169 (284)
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCEeecCCCCCCccHHHHHHHhCccccCCCCceEEEeeccCCCCCCCHHHHHHHHHH
Confidence 4452347889999999999876422333444666554 1 2389999998877667666554 4
Q ss_pred HHHHHHHc----CCceee
Q 020781 282 VEKLAAEE----GLDVEK 295 (321)
Q Consensus 282 v~~~A~~~----Gv~V~~ 295 (321)
|.+..+++ +|-+++
T Consensus 170 l~~~i~~~~~d~rV~iIa 187 (284)
T PRK13366 170 IRRAVESYDEDLNVQIWG 187 (284)
T ss_pred HHHHHHhcCcCCCEEEEe
Confidence 55555443 466664
No 43
>PRK13551 agmatine deiminase; Provisional
Probab=22.37 E-value=2.2e+02 Score=28.77 Aligned_cols=92 Identities=16% Similarity=0.169 Sum_probs=53.3
Q ss_pred CCCCCCCCCCCCCCCCCCCeeeecCCCCeEEeeeeec-----------CCCHHHHHHHHHHhccCCCCCCCceEeeeeeC
Q 020781 189 EILPERPNEGPIQVSPARGIAMIGARPWVALYNIPIM-----------STDVAATRRIARMVSARGGGLPTVQTLGLVHG 257 (321)
Q Consensus 189 ~~~~~~PD~GP~~~~p~~Gat~vGAr~~liayNV~L~-----------t~dl~~Ar~IA~~vR~~gGGL~~VqAmgl~~~ 257 (321)
.+..|.=|+||.-+.-..|- ..++.|+.|-= ..|=.++++||+. .|++.+++..|-++
T Consensus 84 ~~D~W~RD~GP~fv~~~~g~------~~~vdf~FNgWG~k~~~~~~~~~~D~~v~~~la~~-----~g~~~~~~~~lvlE 152 (362)
T PRK13551 84 SDDAWVRDTGPTFVINDKGE------VRGVDWGFNAWGGLVGGLYFPWDKDDQVAQKVLEI-----EGRDRYRAKPFVLE 152 (362)
T ss_pred CCCeeecccCCeEEEcCCCC------EEEEeeeeecCCCcccCccCCCccHHHHHHHHHHH-----cCCCcccccCeEEc
Confidence 45678999999754333331 12667777741 1344778888875 46677776556655
Q ss_pred CCcEEE----------EeecCCCCCCCHHHHHHHHHHHHHHcCCc
Q 020781 258 EDSTEI----------ACMLLEPNQVGADRVQNRVEKLAAEEGLD 292 (321)
Q Consensus 258 ~g~~qV----------S~NL~d~~~t~~~~V~e~v~~~A~~~Gv~ 292 (321)
.|-+++ +| |+|+..-|-..=.+.-+.+.+.+|+.
T Consensus 153 GG~ie~DG~GtlltTe~c-lln~nRNP~ls~~~ie~~Lk~~LGv~ 196 (362)
T PRK13551 153 GGSIHVDGEGTLLTTEEC-LLNPNRNPHLTKEQIEQLLRDYLGVE 196 (362)
T ss_pred CCcEEECCCeEEEEEhhh-hcCCCCCCCCCHHHHHHHHHHHHCCC
Confidence 555554 35 55666555333333334455567774
No 44
>PF01187 MIF: Macrophage migration inhibitory factor (MIF); InterPro: IPR001398 Macrophage migration inhibitory factor (MIF) is a key regulatory cytokine within innate and adaptive immune responses, capable of promoting and modulating the magnitude of the response []. MIF is released from T-cells and macrophages, and acts within the neuroendocrine system. MIF is capable of tautomerase activity, although its biological function has not been fully characterised. It is induced by glucocorticoid and is capable of overriding the anti-inflammatory actions of glucocorticoid []. MIF regulates cytokine secretion and the expression of receptors involved in the immune response. It can be taken up into target cells in order to interact with intracellular signalling molecules, inhibiting p53 function, and/or activating components of the mitogen-activated protein kinase and Jun-activation domain-binding protein-1 (Jab-1) []. MIF has been linked to various inflammatory diseases, such as rheumatoid arthritis and atherosclerosis []. The MIF homologue D-dopachrome tautomerase (4.1.1.84 from EC) is involved in detoxification through the conversion of dopaminechrome (and possibly norepinephrinechrome), the toxic quinine product of the neurotransmitter dopamine (and norepinephrine), to an indole derivative that can serve as a precursor to neuromelanin [, ].; PDB: 1UIZ_C 3FWT_A 1HFO_F 2WKB_D 3RF4_B 2OS5_A 3RF5_A 2XCZ_A 3FWU_A 3B64_A ....
Probab=22.22 E-value=1.2e+02 Score=24.85 Aligned_cols=29 Identities=7% Similarity=0.198 Sum_probs=24.0
Q ss_pred eeCCCCCHHHHHHHHHHHHHHHhhhcCCc
Q 020781 121 HPLARASLDEAAWLAKAVAADIGSRFQVP 149 (321)
Q Consensus 121 ~Pl~~~t~eec~~lA~~lg~~ig~~l~vP 149 (321)
.-++..+.+++-++++.|.+-+.++|+||
T Consensus 62 ~sig~~~~~~n~~~s~~i~~~l~~~LgIp 90 (114)
T PF01187_consen 62 KSIGGLDPEQNKKYSAAITEFLEEELGIP 90 (114)
T ss_dssp EESSSSSHHHHHHHHHHHHHHHHHHHT--
T ss_pred EEccCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 44566789999999999999999999998
No 45
>COG1359 Uncharacterized conserved protein [Function unknown]
Probab=22.12 E-value=1.8e+02 Score=23.32 Aligned_cols=51 Identities=16% Similarity=0.221 Sum_probs=38.4
Q ss_pred cceeeeccccccCCHHH---HHHHHHHHhhCCCeEEEeecCCCCCCcceEEEeec
Q 020781 20 ILVCCKLFISESRNLAA---LDAIERAARLDTETVIVNKFEDRIYNRARYTLVSY 71 (321)
Q Consensus 20 ~lveCvpN~SEGR~~~v---ie~I~~a~~~~~gv~LLd~~~D~dyNRtv~T~vG~ 71 (321)
-++.+..+...|...++ +..++.+-++-+||-..+++.|.+ |-.+|.|.-.
T Consensus 4 i~~~~~~~~~~~~~~~~~~~~~~lv~~sr~EeGcl~Y~l~~d~~-~~~~~~~~E~ 57 (100)
T COG1359 4 VIVLARFKPKPGHREEFLDLLAELVEASRAEEGCLSYELHRDPD-NPGRFVLIEV 57 (100)
T ss_pred EEEEEEEEeCcchHHHHHHHHHHHHHHhccCCCceEEEEEEeCC-CCCEEEEEEE
Confidence 35566677788877666 555666666679999999999998 7777877763
No 46
>COG1324 CutA Uncharacterized protein involved in tolerance to divalent cations [Inorganic ion transport and metabolism]
Probab=21.78 E-value=2e+02 Score=24.42 Aligned_cols=64 Identities=17% Similarity=0.338 Sum_probs=43.4
Q ss_pred eecCCCHHHHHHHHHHhccCC-----CCCCCceEeeeeeC--CCcEEEEeecCCCCCCCHHHHHHHHHHHHHHcC
Q 020781 223 PIMSTDVAATRRIARMVSARG-----GGLPTVQTLGLVHG--EDSTEIACMLLEPNQVGADRVQNRVEKLAAEEG 290 (321)
Q Consensus 223 ~L~t~dl~~Ar~IA~~vR~~g-----GGL~~VqAmgl~~~--~g~~qVS~NL~d~~~t~~~~V~e~v~~~A~~~G 290 (321)
..+..|.+.|++||+.+=+.. -=+|+|+++=|..| +.-.|+.|=+ +|.-....+.+++...-+.
T Consensus 7 l~T~pd~e~Ae~iar~lleerLaACvni~p~i~S~Y~W~G~Iee~~E~~lii----KT~~~~~~~l~~~ikelHp 77 (104)
T COG1324 7 LTTAPDEESAERIARKLLEERLAACVNIIPGIKSIYWWEGKIEEDEEVALII----KTTSEKFEELIERIKELHP 77 (104)
T ss_pred EEeCCChHHHHHHHHHHHHHHhhhheecccCccEEEEECCeeeecceeEEEE----EehHHhHHHHHHHHHHhCC
Confidence 335589999999999876542 45788999988875 2334566632 6666666666666665544
No 47
>PRK14646 hypothetical protein; Provisional
Probab=21.51 E-value=1.1e+02 Score=27.07 Aligned_cols=72 Identities=10% Similarity=0.149 Sum_probs=43.3
Q ss_pred HHHhcCCCCCc-cCCCCCccc-cceeceeC-CCCCHHHHHHHHHHHHHHHhhhcCCcE-eeecccCCC-C---CChHHHh
Q 020781 96 AYGAINLETHS-GAHPRLGVV-DDIVFHPL-ARASLDEAAWLAKAVAADIGSRFQVPV-FLYAAAHPT-G---KPLDTIR 167 (321)
Q Consensus 96 A~elIDm~~H~-G~HPR~Gav-DviPf~Pl-~~~t~eec~~lA~~lg~~ig~~l~vPV-yLYg~A~p~-r---r~La~iR 167 (321)
-+++.|++-+. |..+.+=+. | .|= .++|+++|..+++.++..+=.+--+|= |.-|=++|- - +...+.+
T Consensus 21 G~eLvdve~~~~~~~~~LrV~ID----k~~g~gVtldDC~~vSr~is~~LD~~D~i~~~Y~LEVSSPGldRpL~~~~df~ 96 (155)
T PRK14646 21 DLKICSLNIQTNQNPIVIKIIIK----KTNGDDISLDDCALFNTPASEEIENSNLLNCSYVLEISSQGVSDELTSERDFK 96 (155)
T ss_pred CCEEEEEEEEeCCCCeEEEEEEE----CCCCCCccHHHHHHHHHHHHHHhCcCCCCCCCeEEEEcCCCCCCcCCCHHHHH
Confidence 35688888665 444433322 3 121 259999999999999998875434553 333555555 3 4455555
Q ss_pred hhcC
Q 020781 168 RELG 171 (321)
Q Consensus 168 r~~G 171 (321)
|-.|
T Consensus 97 r~~G 100 (155)
T PRK14646 97 TFKG 100 (155)
T ss_pred HhCC
Confidence 5444
No 48
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=21.48 E-value=83 Score=29.33 Aligned_cols=55 Identities=18% Similarity=0.178 Sum_probs=45.1
Q ss_pred HhcCCCCCccCCCCCccccceeceeCCCCCHHHHHHHHHHHHHHHhhhcCCcEe--eec
Q 020781 98 GAINLETHSGAHPRLGVVDDIVFHPLARASLDEAAWLAKAVAADIGSRFQVPVF--LYA 154 (321)
Q Consensus 98 elIDm~~H~G~HPR~GavDviPf~Pl~~~t~eec~~lA~~lg~~ig~~l~vPVy--LYg 154 (321)
..+|+++|.|+|+-.=.=-+|+.+|+.+..|.--+++-..+=.+|.- |=|++ -||
T Consensus 102 da~~l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~--gg~lvqftYg 158 (194)
T COG3963 102 DAFDLRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPA--GGPLVQFTYG 158 (194)
T ss_pred chhhHHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCC--CCeEEEEEec
Confidence 45789999999998877678999999999999999888888888875 54554 456
No 49
>PRK14639 hypothetical protein; Provisional
Probab=21.36 E-value=1.2e+02 Score=26.53 Aligned_cols=71 Identities=13% Similarity=0.173 Sum_probs=43.8
Q ss_pred HHHhcCCCCCccC-CCCCccc-cceeceeCCCCCHHHHHHHHHHHHHHHhhhcCCcE-eeecccCCC-C---CChHHHhh
Q 020781 96 AYGAINLETHSGA-HPRLGVV-DDIVFHPLARASLDEAAWLAKAVAADIGSRFQVPV-FLYAAAHPT-G---KPLDTIRR 168 (321)
Q Consensus 96 A~elIDm~~H~G~-HPR~Gav-DviPf~Pl~~~t~eec~~lA~~lg~~ig~~l~vPV-yLYg~A~p~-r---r~La~iRr 168 (321)
-+++.|++-+... ++-+=+. |. =+++|+++|.++++.|++.+-.+-.+|- |.-+=++|- - ++..+.+|
T Consensus 11 G~eLvdve~~~~~~~~~lrV~Id~-----~~gv~iddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPGl~RpL~~~~~f~r 85 (140)
T PRK14639 11 GVSFYDDELVSENGRKIYRVYITK-----EGGVNLDDCERLSELLSPIFDVEPPVSGEYFLEVSSPGLERKLSKIEHFAK 85 (140)
T ss_pred CCEEEEEEEEecCCCcEEEEEEeC-----CCCCCHHHHHHHHHHHHHHhccccccCCCeEEEEeCCCCCCcCCCHHHHHH
Confidence 4788888887644 4433332 31 3679999999999999998875433443 333544554 3 34455555
Q ss_pred hcC
Q 020781 169 ELG 171 (321)
Q Consensus 169 ~~G 171 (321)
-.|
T Consensus 86 ~~G 88 (140)
T PRK14639 86 SIG 88 (140)
T ss_pred hCC
Confidence 444
No 50
>PF02119 FlgI: Flagellar P-ring protein; InterPro: IPR001782 The flgH, flgI and fliF genes of Salmonella typhimurium encode the major proteins for the L, P and M rings of the flagellar basal body []. In fact, the basal body consists of four rings (L,P,S and M) surrounding the flagellar rod, which is believed to transmit motor rotation to the filament []. The M ring is integral to the inner membrane of the cell, and may be connected to the rod via the S (supramembrane) ring, which lies just distal to it. The L and P rings reside in the outer membrane and periplasmic space, respectively. The sequences of the FlgH, FlgI and FliF gene products have been determined []. FlgH and FlgI, which are exported across the cell membrane to their destinations in the outer membrane and periplasmic space, have typical N-terminal cleaved signal-peptide sequences [, ]. FlgH is predicted to have an extensive beta-sheet structure, in keeping with other outer membrane proteins, and FlgI is thought to have even more beta-structure content []. Several aspects of the DNA sequence of these genes and their surrounds suggest complex regulation of the flagellar gene system.; GO: 0005198 structural molecule activity, 0001539 ciliary or flagellar motility, 0009428 bacterial-type flagellum basal body, distal rod, P ring, 0030288 outer membrane-bounded periplasmic space
Probab=21.34 E-value=1.6e+02 Score=29.78 Aligned_cols=59 Identities=20% Similarity=0.308 Sum_probs=42.2
Q ss_pred CCCCCCCeeeecCC-----CCeE----EeeeeecCCCHHHHHHHHHHhccCC-CCCCCceEeeeeeCCCcEEEEe
Q 020781 201 QVSPARGIAMIGAR-----PWVA----LYNIPIMSTDVAATRRIARMVSARG-GGLPTVQTLGLVHGEDSTEIAC 265 (321)
Q Consensus 201 ~~~p~~Gat~vGAr-----~~li----ayNV~L~t~dl~~Ar~IA~~vR~~g-GGL~~VqAmgl~~~~g~~qVS~ 265 (321)
+-||+.|-..=||. ++-. .+++.|+..|...|++||.+|-.+- .+. +...+.+.+||..
T Consensus 136 ~n~~t~GrIp~Ga~vEr~v~~~~~~~~~l~L~L~~~dfttA~rIa~aIN~~fg~~~------A~a~d~~~I~v~~ 204 (342)
T PF02119_consen 136 KNHPTVGRIPNGAIVEREVPYDFDDNGTLTLNLNNPDFTTAQRIADAINSRFGPGV------ARAVDAGTIEVSV 204 (342)
T ss_pred ccCCccEEecCcEEEEEcCCCCcCCCCeEEEEecCCChHHHHHHHHHHHHhcCCCc------eEeeCCCEEEEEc
Confidence 45688877777774 2222 4488999999999999999998763 343 4444567788765
No 51
>PTZ00397 macrophage migration inhibition factor-like protein; Provisional
Probab=21.26 E-value=1.4e+02 Score=24.45 Aligned_cols=34 Identities=21% Similarity=0.259 Sum_probs=27.8
Q ss_pred cceeceeC---CCCCHHHHHHHHHHHHHHHhhhcCCc
Q 020781 116 DDIVFHPL---ARASLDEAAWLAKAVAADIGSRFQVP 149 (321)
Q Consensus 116 DviPf~Pl---~~~t~eec~~lA~~lg~~ig~~l~vP 149 (321)
|=|-|+=| ++.+.++.-++++.|.+.+.+.|+||
T Consensus 56 ~p~a~v~i~~~g~~~~e~k~~l~~~i~~~l~~~lgi~ 92 (116)
T PTZ00397 56 DGCCFVRVTSIGGISRSNNSSIAAAITKILASHLKVK 92 (116)
T ss_pred CceEEEEEEEecCCCHHHHHHHHHHHHHHHHHHhCcC
Confidence 44444443 57889999999999999999999988
No 52
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed
Probab=21.22 E-value=2.9e+02 Score=28.46 Aligned_cols=39 Identities=13% Similarity=0.142 Sum_probs=28.5
Q ss_pred CCCCccccce----eceeCCCCCHHHHHHHHHHHHHHHhhhcCC
Q 020781 109 HPRLGVVDDI----VFHPLARASLDEAAWLAKAVAADIGSRFQV 148 (321)
Q Consensus 109 HPR~GavDvi----Pf~Pl~~~t~eec~~lA~~lg~~ig~~l~v 148 (321)
-|-|=|.|.. -++|+ |..-..-++|||.+|+++...++.
T Consensus 130 YPvLqAADILl~~a~iVPV-G~DQ~qHleLaRdIA~rfN~~yg~ 172 (398)
T PRK12283 130 YPLLQSADILIYRAGLVPV-GEDQVPHVEMTREIARRFNHLYGR 172 (398)
T ss_pred CcHHHHHHHHhcCCCEeee-ccccHHHHHHHHHHHHHHHHhcCc
Confidence 4555566653 35666 578888999999999998877653
No 53
>PRK13364 protocatechuate 4,5-dioxygenase subunit beta; Provisional
Probab=20.69 E-value=3.7e+02 Score=26.03 Aligned_cols=70 Identities=16% Similarity=0.123 Sum_probs=45.3
Q ss_pred CCCHHHHHHHHHHhccCCCCCCCceEeeeeeC-----------CC----cEEEEeecCCCCCCCHHHHH---HHHHHHHH
Q 020781 226 STDVAATRRIARMVSARGGGLPTVQTLGLVHG-----------ED----STEIACMLLEPNQVGADRVQ---NRVEKLAA 287 (321)
Q Consensus 226 t~dl~~Ar~IA~~vR~~gGGL~~VqAmgl~~~-----------~g----~~qVS~NL~d~~~t~~~~V~---e~v~~~A~ 287 (321)
..|.++|++|++.+.++|==+..+..++|.|+ .+ .|+|++|..-+...++.+.+ +.|++.++
T Consensus 95 ~~~~~lA~~i~~~l~~~gid~~~~~~~~lDHG~~vPL~~l~~~~d~~~pvVpv~ln~~~~p~~~~~r~~~lG~al~~~i~ 174 (278)
T PRK13364 95 KGDTELSWHIIESLVEEEFDITTCQEMLVDHAFTLPLELFWPGRDYPVKVVPVCINTVQHPLPSARRCYKLGQAIGRAIA 174 (278)
T ss_pred CCCHHHHHHHHHHHHHcCCCeecccCCCCCcchhhhHHHhCcccCCCCCEEEEEeeccCCCCCCHHHHHHHHHHHHHHHH
Confidence 36789999999999876522223345666665 12 58999998865666675555 45666654
Q ss_pred H----cCCceee
Q 020781 288 E----EGLDVEK 295 (321)
Q Consensus 288 ~----~Gv~V~~ 295 (321)
+ .+|-|++
T Consensus 175 ~~~~d~rV~iIa 186 (278)
T PRK13364 175 SWPSDERVVVIG 186 (278)
T ss_pred hcCCCCCEEEEE
Confidence 3 4566665
No 54
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed
Probab=20.15 E-value=2.5e+02 Score=27.83 Aligned_cols=37 Identities=11% Similarity=0.117 Sum_probs=29.2
Q ss_pred eceeCCCCCHHHHHHHHHHHHHHHhhhcCCcEeeeccc
Q 020781 119 VFHPLARASLDEAAWLAKAVAADIGSRFQVPVFLYAAA 156 (321)
Q Consensus 119 Pf~Pl~~~t~eec~~lA~~lg~~ig~~l~vPVyLYg~A 156 (321)
.++|+ |+.-..-+++||.++++++..++.|+|..-.+
T Consensus 144 d~vpv-G~DQ~~h~~laRdiA~~~n~~~~~~~~~~p~~ 180 (333)
T PRK12282 144 TLVPV-GDDQLPMIEQTREIVRRFNSLYGTDVLVEPEA 180 (333)
T ss_pred CEEEe-ccccHHHHHHHHHHHHHHhhhcCCccccCchh
Confidence 35565 67888899999999999998888788776543
Done!