Query 020783
Match_columns 321
No_of_seqs 296 out of 2958
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 05:07:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020783.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020783hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0105 Alternative splicing f 100.0 8.6E-31 1.9E-35 208.5 21.9 186 1-189 1-192 (241)
2 TIGR01659 sex-lethal sex-letha 100.0 7.2E-30 1.6E-34 232.7 24.3 163 4-188 105-274 (346)
3 TIGR01645 half-pint poly-U bin 100.0 5.3E-28 1.1E-32 231.7 21.8 171 5-188 106-283 (612)
4 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 7E-28 1.5E-32 223.0 21.8 161 5-187 2-169 (352)
5 TIGR01622 SF-CC1 splicing fact 100.0 5E-27 1.1E-31 224.7 22.2 172 3-187 86-264 (457)
6 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 3.3E-26 7.1E-31 211.9 24.1 180 5-188 88-348 (352)
7 KOG0148 Apoptosis-promoting RN 99.9 2.7E-27 5.8E-32 199.1 14.6 169 6-180 62-233 (321)
8 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 9.3E-26 2E-30 216.4 23.0 170 5-187 1-172 (481)
9 TIGR01628 PABP-1234 polyadenyl 99.9 4.9E-26 1.1E-30 223.0 20.5 157 8-186 2-164 (562)
10 TIGR01648 hnRNP-R-Q heterogene 99.9 9.1E-25 2E-29 209.2 25.4 175 6-188 58-306 (578)
11 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 4.5E-25 9.7E-30 211.7 23.3 181 4-186 273-477 (481)
12 KOG0109 RNA-binding protein LA 99.9 2.3E-26 5.1E-31 195.2 11.1 144 7-181 3-146 (346)
13 TIGR01642 U2AF_lg U2 snRNP aux 99.9 9.8E-25 2.1E-29 211.6 22.4 177 3-187 172-373 (509)
14 TIGR01642 U2AF_lg U2 snRNP aux 99.9 2.7E-24 5.8E-29 208.6 22.4 178 5-186 294-499 (509)
15 TIGR01628 PABP-1234 polyadenyl 99.9 1.8E-24 3.8E-29 212.0 19.1 178 5-188 177-363 (562)
16 TIGR01622 SF-CC1 splicing fact 99.9 1.7E-23 3.7E-28 200.3 22.9 176 6-185 186-444 (457)
17 KOG0145 RNA-binding protein EL 99.9 1E-23 2.3E-28 176.5 14.4 163 4-188 39-208 (360)
18 KOG0117 Heterogeneous nuclear 99.9 1.9E-23 4E-28 186.9 16.6 174 6-187 83-329 (506)
19 KOG0144 RNA-binding protein CU 99.9 5.7E-24 1.2E-28 189.4 13.2 165 6-191 34-208 (510)
20 KOG0131 Splicing factor 3b, su 99.9 1.7E-23 3.7E-28 166.7 12.5 160 4-186 7-174 (203)
21 KOG0127 Nucleolar protein fibr 99.9 3.3E-22 7.1E-27 182.8 16.4 175 6-185 5-192 (678)
22 KOG0106 Alternative splicing f 99.9 9.3E-23 2E-27 170.4 11.5 164 7-183 2-165 (216)
23 KOG0124 Polypyrimidine tract-b 99.9 8.2E-23 1.8E-27 178.5 11.1 166 7-185 114-286 (544)
24 KOG0145 RNA-binding protein EL 99.9 6E-22 1.3E-26 166.0 15.7 177 5-185 126-354 (360)
25 KOG0127 Nucleolar protein fibr 99.9 1.2E-20 2.6E-25 172.7 19.4 162 6-167 117-354 (678)
26 KOG0107 Alternative splicing f 99.9 2.4E-20 5.2E-25 147.9 15.2 80 4-85 8-87 (195)
27 KOG0123 Polyadenylate-binding 99.8 5.2E-20 1.1E-24 169.0 16.9 146 7-186 2-150 (369)
28 KOG0110 RNA-binding protein (R 99.8 2.8E-20 6.1E-25 175.2 13.7 164 7-185 516-689 (725)
29 KOG0107 Alternative splicing f 99.8 1.7E-19 3.6E-24 143.1 15.9 78 108-190 9-86 (195)
30 TIGR01645 half-pint poly-U bin 99.8 2.5E-18 5.5E-23 165.3 22.8 78 5-82 203-283 (612)
31 KOG4207 Predicted splicing fac 99.8 4.7E-19 1E-23 144.0 13.8 80 5-84 12-94 (256)
32 KOG0123 Polyadenylate-binding 99.8 4.4E-19 9.6E-24 162.9 15.3 167 3-186 73-243 (369)
33 KOG4206 Spliceosomal protein s 99.8 3.9E-18 8.3E-23 141.4 16.8 172 1-173 4-209 (221)
34 PLN03134 glycine-rich RNA-bind 99.8 3.5E-18 7.5E-23 137.3 13.4 83 4-86 32-117 (144)
35 KOG4205 RNA-binding protein mu 99.8 1.4E-18 3E-23 154.5 11.7 167 1-187 1-174 (311)
36 KOG0147 Transcriptional coacti 99.8 2.5E-18 5.3E-23 158.2 13.6 172 5-177 277-520 (549)
37 KOG0148 Apoptosis-promoting RN 99.8 2.5E-18 5.4E-23 145.2 11.0 138 1-189 1-142 (321)
38 KOG0147 Transcriptional coacti 99.7 1.5E-18 3.2E-23 159.7 5.6 167 3-176 176-349 (549)
39 KOG1457 RNA binding protein (c 99.7 6E-17 1.3E-21 133.3 14.4 169 6-174 34-275 (284)
40 KOG4207 Predicted splicing fac 99.7 5.3E-17 1.2E-21 132.1 13.5 81 103-187 7-91 (256)
41 KOG4676 Splicing factor, argin 99.7 1.7E-18 3.7E-23 152.8 3.9 169 3-173 4-214 (479)
42 KOG1548 Transcription elongati 99.7 5E-16 1.1E-20 135.5 18.3 181 5-189 133-352 (382)
43 KOG0113 U1 small nuclear ribon 99.7 2.9E-16 6.3E-21 134.5 15.2 86 3-88 98-186 (335)
44 KOG0121 Nuclear cap-binding pr 99.7 6E-17 1.3E-21 122.1 7.0 82 3-84 33-117 (153)
45 PF00076 RRM_1: RNA recognitio 99.7 9E-17 1.9E-21 112.9 7.1 68 9-76 1-70 (70)
46 KOG0144 RNA-binding protein CU 99.7 4.9E-16 1.1E-20 139.1 13.2 80 5-84 123-207 (510)
47 KOG4211 Splicing factor hnRNP- 99.7 2.1E-15 4.7E-20 137.3 16.0 165 5-185 9-178 (510)
48 PLN03120 nucleic acid binding 99.7 6.7E-16 1.5E-20 132.7 11.3 78 6-84 4-81 (260)
49 TIGR01648 hnRNP-R-Q heterogene 99.7 7.6E-16 1.6E-20 148.1 11.9 128 5-137 232-369 (578)
50 KOG4212 RNA-binding protein hn 99.6 1.7E-14 3.7E-19 129.4 17.9 170 5-174 43-283 (608)
51 KOG0146 RNA-binding protein ET 99.6 4.8E-15 1E-19 125.2 13.3 179 5-187 18-363 (371)
52 KOG0110 RNA-binding protein (R 99.6 6.6E-15 1.4E-19 139.3 14.1 170 4-176 383-589 (725)
53 PLN03121 nucleic acid binding 99.6 8E-15 1.7E-19 124.1 11.5 79 5-84 4-82 (243)
54 KOG0122 Translation initiation 99.6 4E-15 8.6E-20 124.3 9.4 80 4-83 187-269 (270)
55 KOG0114 Predicted RNA-binding 99.6 3.2E-15 6.9E-20 108.6 7.6 80 5-84 17-96 (124)
56 COG0724 RNA-binding proteins ( 99.6 2.1E-14 4.5E-19 127.3 14.7 142 6-147 115-263 (306)
57 KOG0124 Polypyrimidine tract-b 99.6 5.4E-14 1.2E-18 123.6 16.7 77 7-83 211-290 (544)
58 KOG1190 Polypyrimidine tract-b 99.6 6.9E-14 1.5E-18 124.6 17.5 176 6-186 297-488 (492)
59 PF14259 RRM_6: RNA recognitio 99.6 5.2E-15 1.1E-19 104.1 7.4 68 9-76 1-70 (70)
60 TIGR01659 sex-lethal sex-letha 99.6 1.6E-14 3.5E-19 132.1 11.0 81 5-85 192-277 (346)
61 KOG0149 Predicted RNA-binding 99.5 3.6E-14 7.7E-19 118.2 10.2 75 7-82 13-90 (247)
62 KOG0120 Splicing factor U2AF, 99.5 3.8E-14 8.3E-19 132.2 11.5 172 5-176 288-483 (500)
63 smart00362 RRM_2 RNA recogniti 99.5 6.7E-14 1.4E-18 97.9 9.1 71 8-78 1-72 (72)
64 KOG0415 Predicted peptidyl pro 99.5 6.7E-15 1.4E-19 128.8 4.5 82 4-85 237-321 (479)
65 KOG0125 Ataxin 2-binding prote 99.5 2.6E-14 5.6E-19 124.1 8.1 82 5-86 95-177 (376)
66 KOG0126 Predicted RNA-binding 99.5 1.7E-15 3.7E-20 121.0 0.7 82 4-85 33-117 (219)
67 PLN03213 repressor of silencin 99.5 8.7E-14 1.9E-18 126.7 9.6 77 4-82 8-87 (759)
68 KOG0130 RNA-binding protein RB 99.5 4.7E-14 1E-18 107.4 6.6 78 7-84 73-153 (170)
69 PLN03134 glycine-rich RNA-bind 99.5 1.6E-12 3.5E-17 104.4 14.8 80 106-189 31-114 (144)
70 smart00360 RRM RNA recognition 99.4 5.4E-13 1.2E-17 92.8 8.3 68 11-78 1-71 (71)
71 cd00590 RRM RRM (RNA recogniti 99.4 8.6E-13 1.9E-17 92.7 9.3 72 8-79 1-74 (74)
72 KOG0111 Cyclophilin-type pepti 99.4 2.1E-13 4.5E-18 112.3 5.5 84 4-87 8-94 (298)
73 KOG0105 Alternative splicing f 99.4 1.5E-12 3.3E-17 104.5 10.1 79 108-190 5-84 (241)
74 PF13893 RRM_5: RNA recognitio 99.4 1.2E-12 2.7E-17 87.7 7.7 56 23-80 1-56 (56)
75 KOG0113 U1 small nuclear ribon 99.4 1.7E-11 3.7E-16 105.5 15.8 77 107-187 99-179 (335)
76 KOG0108 mRNA cleavage and poly 99.4 1.1E-12 2.4E-17 121.9 9.3 79 7-85 19-100 (435)
77 PF00076 RRM_1: RNA recognitio 99.4 3E-12 6.5E-17 89.6 9.4 63 112-174 1-66 (70)
78 KOG1190 Polypyrimidine tract-b 99.4 2.5E-12 5.4E-17 114.8 10.4 178 3-185 25-224 (492)
79 KOG4212 RNA-binding protein hn 99.3 6.6E-11 1.4E-15 106.6 16.7 74 6-79 215-290 (608)
80 KOG0129 Predicted RNA-binding 99.3 3.8E-11 8.3E-16 110.6 15.4 158 5-166 258-432 (520)
81 KOG0117 Heterogeneous nuclear 99.3 4.1E-12 8.9E-17 114.7 7.7 77 7-88 260-336 (506)
82 KOG1365 RNA-binding protein Fu 99.3 1.1E-11 2.4E-16 109.9 9.5 176 7-187 162-360 (508)
83 KOG0130 RNA-binding protein RB 99.3 1.5E-11 3.2E-16 93.9 8.2 77 106-186 69-149 (170)
84 KOG0109 RNA-binding protein LA 99.3 5.3E-12 1.1E-16 108.2 5.6 79 3-86 75-153 (346)
85 smart00361 RRM_1 RNA recogniti 99.3 2.6E-11 5.7E-16 85.2 7.6 58 20-77 2-69 (70)
86 PLN03120 nucleic acid binding 99.3 5.4E-11 1.2E-15 102.6 11.0 74 109-187 4-78 (260)
87 KOG1456 Heterogeneous nuclear 99.2 6E-10 1.3E-14 98.7 17.3 176 3-180 284-480 (494)
88 KOG0125 Ataxin 2-binding prote 99.2 3.4E-11 7.3E-16 104.9 8.9 80 104-187 91-172 (376)
89 KOG0114 Predicted RNA-binding 99.2 9.5E-11 2.1E-15 85.5 8.9 78 106-187 15-93 (124)
90 PF14259 RRM_6: RNA recognitio 99.2 7.7E-11 1.7E-15 82.7 8.1 63 112-174 1-66 (70)
91 KOG0121 Nuclear cap-binding pr 99.2 7.6E-11 1.6E-15 89.3 7.6 78 107-188 34-115 (153)
92 KOG1456 Heterogeneous nuclear 99.2 7.5E-10 1.6E-14 98.1 13.9 168 4-190 29-200 (494)
93 KOG0120 Splicing factor U2AF, 99.2 1.4E-10 3E-15 108.6 9.8 176 3-186 172-366 (500)
94 KOG0112 Large RNA-binding prot 99.1 3E-11 6.6E-16 117.4 4.8 156 4-185 370-527 (975)
95 PLN03213 repressor of silencin 99.1 1.9E-10 4.1E-15 105.2 9.6 77 108-188 9-87 (759)
96 smart00362 RRM_2 RNA recogniti 99.1 4.4E-10 9.6E-15 78.2 9.2 69 111-183 1-71 (72)
97 KOG0146 RNA-binding protein ET 99.1 6.9E-11 1.5E-15 100.2 5.8 82 3-84 282-366 (371)
98 PLN03121 nucleic acid binding 99.1 5E-10 1.1E-14 95.2 10.6 76 108-188 4-80 (243)
99 KOG4208 Nucleolar RNA-binding 99.1 2.8E-10 6.1E-15 93.4 8.0 79 5-83 48-130 (214)
100 KOG0132 RNA polymerase II C-te 99.1 1.9E-10 4.1E-15 110.3 7.9 77 6-85 421-497 (894)
101 KOG0122 Translation initiation 99.1 6.2E-10 1.3E-14 93.5 9.8 79 106-188 186-268 (270)
102 KOG0131 Splicing factor 3b, su 99.1 2.9E-10 6.3E-15 91.4 6.2 81 5-85 95-179 (203)
103 KOG4454 RNA binding protein (R 99.0 6.8E-11 1.5E-15 97.6 1.4 140 4-173 7-151 (267)
104 KOG0153 Predicted RNA-binding 99.0 9.9E-10 2.1E-14 96.6 8.4 76 4-82 226-302 (377)
105 smart00360 RRM RNA recognition 99.0 2.2E-09 4.8E-14 74.3 8.3 61 114-174 1-65 (71)
106 cd00590 RRM RRM (RNA recogniti 99.0 5E-09 1.1E-13 73.2 10.0 69 111-183 1-72 (74)
107 KOG4211 Splicing factor hnRNP- 98.9 3.7E-08 8E-13 90.6 14.5 172 5-183 102-352 (510)
108 PF13893 RRM_5: RNA recognitio 98.9 9.4E-09 2E-13 68.7 7.5 55 126-185 1-55 (56)
109 KOG0533 RRM motif-containing p 98.9 9.9E-09 2.2E-13 88.3 8.5 80 6-85 83-164 (243)
110 KOG4661 Hsp27-ERE-TATA-binding 98.8 1E-08 2.2E-13 95.5 8.5 81 6-86 405-488 (940)
111 KOG4205 RNA-binding protein mu 98.8 4.3E-09 9.2E-14 94.1 6.0 83 5-88 96-181 (311)
112 KOG0126 Predicted RNA-binding 98.8 8.1E-10 1.7E-14 88.8 -0.6 75 110-188 36-114 (219)
113 KOG2193 IGF-II mRNA-binding pr 98.8 1.5E-09 3.3E-14 97.5 0.8 141 7-174 2-146 (584)
114 KOG4660 Protein Mei2, essentia 98.8 5E-09 1.1E-13 97.6 4.2 158 4-165 73-231 (549)
115 KOG0111 Cyclophilin-type pepti 98.8 8.6E-09 1.9E-13 85.3 4.7 80 108-191 9-92 (298)
116 KOG0149 Predicted RNA-binding 98.7 3.1E-08 6.8E-13 83.0 7.8 66 109-175 12-81 (247)
117 KOG0116 RasGAP SH3 binding pro 98.7 2E-08 4.3E-13 93.2 7.3 76 6-82 288-366 (419)
118 KOG4209 Splicing factor RNPS1, 98.7 2.6E-08 5.6E-13 85.9 6.9 81 3-84 98-181 (231)
119 KOG0151 Predicted splicing reg 98.7 2E-08 4.3E-13 95.8 6.6 79 5-83 173-257 (877)
120 COG0724 RNA-binding proteins ( 98.7 7.2E-08 1.6E-12 85.1 9.9 75 109-187 115-193 (306)
121 KOG0108 mRNA cleavage and poly 98.7 4E-08 8.7E-13 91.7 7.6 78 110-191 19-100 (435)
122 KOG0128 RNA-binding protein SA 98.7 1.1E-09 2.3E-14 106.4 -3.0 134 4-174 665-804 (881)
123 smart00361 RRM_1 RNA recogniti 98.6 2E-07 4.3E-12 65.3 8.0 57 123-183 2-69 (70)
124 KOG0415 Predicted peptidyl pro 98.6 1.2E-07 2.7E-12 83.7 7.9 76 105-184 235-314 (479)
125 KOG4210 Nuclear localization s 98.6 6.5E-08 1.4E-12 86.2 6.0 170 5-189 87-264 (285)
126 PF11608 Limkain-b1: Limkain b 98.5 6.4E-07 1.4E-11 63.2 7.5 71 7-84 3-78 (90)
127 KOG0106 Alternative splicing f 98.5 5E-07 1.1E-11 76.2 8.0 69 111-187 3-71 (216)
128 KOG0226 RNA-binding proteins [ 98.4 2.8E-07 6E-12 78.2 4.6 78 5-82 189-269 (290)
129 KOG1457 RNA binding protein (c 98.4 2.2E-07 4.7E-12 77.3 3.9 67 3-70 207-273 (284)
130 KOG1365 RNA-binding protein Fu 98.3 6.4E-06 1.4E-10 73.8 11.6 158 4-166 58-225 (508)
131 PF04059 RRM_2: RNA recognitio 98.3 3.8E-06 8.3E-11 62.1 8.6 77 7-83 2-87 (97)
132 KOG4676 Splicing factor, argin 98.3 1E-07 2.2E-12 85.3 0.2 63 7-71 152-214 (479)
133 KOG2202 U2 snRNP splicing fact 98.3 3.2E-07 6.9E-12 78.1 2.0 64 21-84 83-149 (260)
134 KOG4206 Spliceosomal protein s 98.3 4.7E-06 1E-10 69.9 8.3 77 108-188 8-89 (221)
135 KOG0153 Predicted RNA-binding 98.2 6.1E-06 1.3E-10 73.1 8.4 77 106-188 225-302 (377)
136 KOG0116 RasGAP SH3 binding pro 98.2 1.9E-05 4.1E-10 73.6 12.0 76 109-189 288-367 (419)
137 KOG0132 RNA polymerase II C-te 98.2 5E-06 1.1E-10 80.6 7.9 71 108-184 420-490 (894)
138 KOG4661 Hsp27-ERE-TATA-binding 98.2 5.1E-06 1.1E-10 77.9 7.7 74 109-186 405-482 (940)
139 KOG4307 RNA binding protein RB 98.2 1E-05 2.2E-10 77.6 9.6 174 5-184 310-509 (944)
140 KOG0533 RRM motif-containing p 98.2 9.2E-06 2E-10 70.1 8.4 68 109-176 83-153 (243)
141 KOG1995 Conserved Zn-finger pr 98.1 3.4E-06 7.3E-11 75.2 4.0 80 5-84 65-155 (351)
142 KOG4368 Predicted RNA binding 98.0 1.4E-05 3E-10 75.2 7.3 17 277-293 686-702 (757)
143 KOG3152 TBP-binding protein, a 98.0 3.2E-06 7E-11 71.9 2.8 69 6-74 74-157 (278)
144 PF08777 RRM_3: RNA binding mo 98.0 1.4E-05 3E-10 60.5 5.8 70 7-79 2-76 (105)
145 KOG4454 RNA binding protein (R 98.0 3.4E-06 7.3E-11 70.2 2.3 73 104-176 4-78 (267)
146 KOG4208 Nucleolar RNA-binding 98.0 2.8E-05 6.2E-10 64.3 7.6 72 107-178 47-123 (214)
147 KOG1548 Transcription elongati 97.9 4.6E-05 1E-09 67.6 8.2 77 107-187 132-219 (382)
148 KOG0226 RNA-binding proteins [ 97.9 2.6E-05 5.6E-10 66.4 6.3 154 8-175 98-260 (290)
149 PF14605 Nup35_RRM_2: Nup53/35 97.9 3.2E-05 7E-10 50.7 5.5 53 6-62 1-53 (53)
150 PF04059 RRM_2: RNA recognitio 97.9 0.00015 3.2E-09 53.7 9.5 67 110-176 2-74 (97)
151 COG5175 MOT2 Transcriptional r 97.9 3.1E-05 6.7E-10 68.4 6.6 76 6-81 114-201 (480)
152 KOG4210 Nuclear localization s 97.9 9.6E-06 2.1E-10 72.4 3.5 81 3-84 181-265 (285)
153 PF08777 RRM_3: RNA binding mo 97.8 3.9E-05 8.6E-10 58.0 5.3 59 110-170 2-60 (105)
154 KOG4660 Protein Mei2, essentia 97.8 2.4E-05 5.3E-10 73.5 4.8 69 107-176 73-141 (549)
155 KOG4849 mRNA cleavage factor I 97.6 4.8E-05 1E-09 67.5 3.9 74 7-80 81-159 (498)
156 PF11608 Limkain-b1: Limkain b 97.6 0.00055 1.2E-08 48.6 8.0 70 110-189 3-77 (90)
157 PF05172 Nup35_RRM: Nup53/35/4 97.6 0.00029 6.4E-09 52.5 7.1 75 5-81 5-90 (100)
158 KOG2314 Translation initiation 97.6 0.00013 2.9E-09 68.7 6.2 78 6-83 58-144 (698)
159 KOG0151 Predicted splicing reg 97.6 0.00025 5.5E-09 68.5 7.8 74 107-184 172-252 (877)
160 KOG4307 RNA binding protein RB 97.5 0.00031 6.8E-09 67.7 8.0 76 4-79 864-943 (944)
161 KOG1855 Predicted RNA-binding 97.4 0.00011 2.3E-09 67.1 3.4 65 4-68 229-309 (484)
162 KOG4209 Splicing factor RNPS1, 97.4 0.00022 4.8E-09 61.7 5.2 74 108-186 100-177 (231)
163 KOG2416 Acinus (induces apopto 97.4 0.00015 3.2E-09 68.7 4.0 76 4-82 442-521 (718)
164 PF14605 Nup35_RRM_2: Nup53/35 97.3 0.00067 1.5E-08 44.4 5.3 52 110-164 2-53 (53)
165 KOG2202 U2 snRNP splicing fact 97.3 0.00045 9.7E-09 59.2 5.6 58 124-181 83-144 (260)
166 KOG0115 RNA-binding protein p5 97.3 0.00067 1.5E-08 58.1 6.6 101 57-184 6-109 (275)
167 KOG0112 Large RNA-binding prot 97.2 0.00044 9.5E-09 68.6 5.3 83 3-88 452-536 (975)
168 PF08952 DUF1866: Domain of un 97.2 0.0016 3.5E-08 51.5 7.2 54 22-81 52-105 (146)
169 KOG0128 RNA-binding protein SA 97.0 0.00064 1.4E-08 67.2 4.2 81 7-87 737-819 (881)
170 KOG1996 mRNA splicing factor [ 97.0 0.0021 4.6E-08 56.1 6.4 62 20-81 300-365 (378)
171 PF08675 RNA_bind: RNA binding 96.8 0.0073 1.6E-07 42.9 6.7 54 7-66 10-63 (87)
172 KOG0129 Predicted RNA-binding 96.8 0.0046 1E-07 58.1 7.3 61 3-63 367-431 (520)
173 KOG3152 TBP-binding protein, a 96.7 0.0012 2.5E-08 56.6 2.7 68 109-176 74-157 (278)
174 KOG2314 Translation initiation 96.6 0.0062 1.3E-07 57.8 7.1 66 109-174 58-132 (698)
175 KOG1996 mRNA splicing factor [ 96.5 0.0094 2E-07 52.1 7.0 54 123-176 300-358 (378)
176 PF05172 Nup35_RRM: Nup53/35/4 96.4 0.011 2.5E-07 44.0 6.0 65 109-175 6-81 (100)
177 PF07576 BRAP2: BRCA1-associat 96.3 0.037 7.9E-07 42.1 8.3 68 4-71 11-80 (110)
178 COG5175 MOT2 Transcriptional r 96.2 0.015 3.2E-07 51.9 6.7 71 105-175 110-193 (480)
179 KOG1995 Conserved Zn-finger pr 96.1 0.01 2.2E-07 53.4 5.4 69 106-174 63-143 (351)
180 KOG1855 Predicted RNA-binding 96.1 0.0064 1.4E-07 55.8 4.2 64 107-170 229-309 (484)
181 PF15023 DUF4523: Protein of u 96.1 0.048 1E-06 42.8 8.0 73 4-81 84-160 (166)
182 KOG0115 RNA-binding protein p5 95.9 0.025 5.5E-07 48.7 6.5 74 7-80 32-111 (275)
183 KOG2591 c-Mpl binding protein, 95.6 0.064 1.4E-06 51.1 8.4 97 56-181 148-248 (684)
184 KOG2253 U1 snRNP complex, subu 95.4 0.0086 1.9E-07 57.9 2.2 71 5-81 39-109 (668)
185 KOG2068 MOT2 transcription fac 95.4 0.0061 1.3E-07 54.4 0.9 75 7-81 78-161 (327)
186 KOG2135 Proteins containing th 95.2 0.012 2.6E-07 54.7 2.4 77 4-84 370-447 (526)
187 PF03467 Smg4_UPF3: Smg-4/UPF3 95.1 0.025 5.3E-07 47.0 3.7 82 3-84 4-99 (176)
188 PF10309 DUF2414: Protein of u 95.0 0.19 4E-06 33.9 7.0 53 7-65 6-62 (62)
189 KOG0835 Cyclin L [General func 94.8 0.041 8.8E-07 49.1 4.3 20 44-63 172-191 (367)
190 PF08952 DUF1866: Domain of un 94.6 0.21 4.5E-06 39.7 7.6 53 125-186 52-104 (146)
191 PF04847 Calcipressin: Calcipr 94.6 0.12 2.7E-06 43.0 6.7 63 19-84 8-72 (184)
192 PF03880 DbpA: DbpA RNA bindin 94.5 0.18 3.8E-06 35.4 6.3 58 17-80 12-74 (74)
193 PF11767 SET_assoc: Histone ly 94.1 0.27 5.7E-06 33.7 6.3 55 17-77 11-65 (66)
194 PF10309 DUF2414: Protein of u 94.1 0.45 9.7E-06 32.1 7.2 54 110-167 6-62 (62)
195 KOG2591 c-Mpl binding protein, 93.8 0.093 2E-06 50.0 4.7 68 4-75 173-244 (684)
196 KOG0804 Cytoplasmic Zn-finger 93.7 0.2 4.4E-06 46.6 6.6 68 5-72 73-142 (493)
197 KOG4285 Mitotic phosphoprotein 93.6 0.15 3.3E-06 45.0 5.5 72 7-83 198-270 (350)
198 KOG2318 Uncharacterized conser 93.2 0.47 1E-05 45.7 8.2 77 3-79 171-302 (650)
199 PF08675 RNA_bind: RNA binding 92.9 0.29 6.4E-06 34.9 5.0 54 111-169 11-64 (87)
200 KOG0835 Cyclin L [General func 92.3 0.26 5.6E-06 44.2 5.1 12 120-131 212-223 (367)
201 PF08648 DUF1777: Protein of u 92.3 0.54 1.2E-05 39.1 6.9 6 287-292 132-137 (180)
202 PF03467 Smg4_UPF3: Smg-4/UPF3 91.9 0.38 8.3E-06 39.9 5.5 68 109-176 7-84 (176)
203 PF06495 Transformer: Fruit fl 91.6 0.19 4.1E-06 40.7 3.2 10 290-299 130-139 (182)
204 PF07292 NID: Nmi/IFP 35 domai 91.6 0.47 1E-05 34.4 4.9 71 48-130 1-73 (88)
205 PF10567 Nab6_mRNP_bdg: RNA-re 91.3 5.1 0.00011 35.6 11.8 164 6-170 15-214 (309)
206 KOG2416 Acinus (induces apopto 90.9 0.18 3.8E-06 48.6 2.7 68 105-174 440-508 (718)
207 KOG4574 RNA-binding protein (c 90.3 0.2 4.4E-06 50.1 2.6 75 10-87 302-378 (1007)
208 KOG2193 IGF-II mRNA-binding pr 89.1 0.019 4.1E-07 52.7 -5.0 78 6-83 80-157 (584)
209 PF07576 BRAP2: BRCA1-associat 88.6 5.7 0.00012 30.1 8.9 63 112-174 16-81 (110)
210 KOG4285 Mitotic phosphoprotein 87.9 1.5 3.3E-05 38.9 6.0 67 112-185 200-266 (350)
211 PF14111 DUF4283: Domain of un 85.7 1 2.3E-05 36.0 3.8 120 9-145 18-141 (153)
212 PF15023 DUF4523: Protein of u 84.7 4 8.7E-05 32.3 6.3 63 107-172 84-150 (166)
213 KOG0804 Cytoplasmic Zn-finger 83.7 5.2 0.00011 37.6 7.6 66 109-174 74-142 (493)
214 PF04847 Calcipressin: Calcipr 83.4 4.4 9.6E-05 33.8 6.5 59 122-186 8-68 (184)
215 KOG2888 Putative RNA binding p 81.9 0.82 1.8E-05 41.0 1.7 9 125-133 228-236 (453)
216 KOG2068 MOT2 transcription fac 81.6 0.77 1.7E-05 41.4 1.4 69 108-176 76-154 (327)
217 PF03880 DbpA: DbpA RNA bindin 80.0 9.6 0.00021 26.5 6.3 58 119-185 11-73 (74)
218 KOG4849 mRNA cleavage factor I 77.0 2.9 6.2E-05 37.9 3.5 69 108-176 79-153 (498)
219 KOG2135 Proteins containing th 76.7 1.8 4E-05 40.8 2.3 70 112-188 375-445 (526)
220 KOG2253 U1 snRNP complex, subu 76.1 2.4 5.2E-05 41.7 3.0 67 104-175 35-101 (668)
221 PRK14548 50S ribosomal protein 73.5 12 0.00026 26.9 5.4 56 8-63 22-79 (84)
222 PF14893 PNMA: PNMA 73.2 4.2 9.2E-05 37.2 3.7 56 1-56 13-73 (331)
223 KOG4019 Calcineurin-mediated s 72.8 3.8 8.3E-05 33.7 3.0 75 7-84 11-91 (193)
224 TIGR03636 L23_arch archaeal ri 71.2 16 0.00035 25.8 5.5 56 8-63 15-72 (77)
225 PF15513 DUF4651: Domain of un 69.6 11 0.00023 25.4 4.0 19 21-39 9-27 (62)
226 KOG4574 RNA-binding protein (c 69.2 2.6 5.7E-05 42.6 1.6 58 114-173 303-360 (1007)
227 KOG3580 Tight junction protein 68.8 31 0.00066 34.0 8.4 40 106-145 58-98 (1027)
228 PF03468 XS: XS domain; Inter 66.7 4.7 0.0001 31.0 2.2 56 8-63 10-75 (116)
229 KOG2146 Splicing coactivator S 64.7 28 0.00061 30.9 6.7 19 49-67 56-74 (354)
230 COG5638 Uncharacterized conser 64.5 26 0.00057 32.7 6.8 36 3-38 143-183 (622)
231 PF02714 DUF221: Domain of unk 63.1 15 0.00032 33.5 5.2 56 48-131 1-56 (325)
232 PF09707 Cas_Cas2CT1978: CRISP 62.9 17 0.00036 26.3 4.3 50 5-54 24-73 (86)
233 KOG4483 Uncharacterized conser 59.1 21 0.00045 33.2 5.2 55 6-63 391-445 (528)
234 KOG4410 5-formyltetrahydrofola 58.6 17 0.00036 32.2 4.3 47 7-55 331-377 (396)
235 cd04908 ACT_Bt0572_1 N-termina 54.9 60 0.0013 21.5 6.4 44 19-63 14-58 (66)
236 KOG4410 5-formyltetrahydrofola 54.6 77 0.0017 28.3 7.7 50 107-157 328-377 (396)
237 KOG2891 Surface glycoprotein [ 53.5 16 0.00034 32.2 3.4 65 6-70 149-247 (445)
238 cd04889 ACT_PDH-BS-like C-term 53.0 57 0.0012 20.7 5.8 43 20-62 12-55 (56)
239 KOG4246 Predicted DNA-binding 51.1 5.7 0.00012 40.2 0.4 24 108-131 144-173 (1194)
240 PRK11558 putative ssRNA endonu 50.5 28 0.00061 25.7 3.8 50 6-55 27-76 (97)
241 KOG2295 C2H2 Zn-finger protein 50.3 2.2 4.7E-05 41.1 -2.5 69 5-73 230-301 (648)
242 PRK10629 EnvZ/OmpR regulon mod 48.3 1.3E+02 0.0028 23.4 7.8 72 5-81 34-109 (127)
243 KOG4213 RNA-binding protein La 47.6 24 0.00052 29.2 3.3 42 20-63 123-168 (205)
244 PF07292 NID: Nmi/IFP 35 domai 47.4 10 0.00022 27.5 1.1 26 3-28 49-74 (88)
245 PTZ00191 60S ribosomal protein 47.3 57 0.0012 26.0 5.4 55 8-62 83-139 (145)
246 KOG4246 Predicted DNA-binding 45.8 9.2 0.0002 38.8 0.9 7 47-53 61-67 (1194)
247 KOG2318 Uncharacterized conser 44.4 1.4E+02 0.003 29.5 8.3 77 107-183 172-304 (650)
248 PF11767 SET_assoc: Histone ly 43.9 1E+02 0.0022 21.0 6.0 50 120-174 11-60 (66)
249 PF03468 XS: XS domain; Inter 43.2 42 0.0009 25.7 4.0 47 111-158 10-67 (116)
250 KOG1295 Nonsense-mediated deca 42.3 29 0.00062 32.2 3.4 66 109-174 7-79 (376)
251 PF15221 LEP503: Lens epitheli 41.7 1.9 4E-05 27.8 -3.0 20 299-318 42-61 (61)
252 PF03439 Spt5-NGN: Early trans 41.6 59 0.0013 23.1 4.4 35 32-68 33-67 (84)
253 CHL00123 rps6 ribosomal protei 40.8 77 0.0017 23.3 5.0 50 14-63 14-80 (97)
254 KOG1295 Nonsense-mediated deca 39.3 33 0.00073 31.7 3.4 65 6-70 7-77 (376)
255 TIGR01873 cas_CT1978 CRISPR-as 38.6 53 0.0012 23.8 3.7 49 6-54 25-74 (87)
256 KOG4008 rRNA processing protei 38.6 25 0.00054 30.3 2.3 35 4-38 38-72 (261)
257 PF11411 DNA_ligase_IV: DNA li 38.0 26 0.00055 20.8 1.6 17 16-32 19-35 (36)
258 PRK08559 nusG transcription an 34.0 1.5E+02 0.0032 23.8 6.1 33 33-67 36-68 (153)
259 PRK14548 50S ribosomal protein 33.7 1.8E+02 0.0039 20.9 6.8 56 112-167 23-81 (84)
260 PF11823 DUF3343: Protein of u 33.6 49 0.0011 22.8 2.8 28 46-73 2-29 (73)
261 smart00596 PRE_C2HC PRE_C2HC d 33.0 1.1E+02 0.0023 21.1 4.2 59 21-82 2-64 (69)
262 TIGR02542 B_forsyth_147 Bacter 32.3 2E+02 0.0043 22.0 5.9 24 14-39 11-34 (145)
263 KOG2891 Surface glycoprotein [ 31.7 23 0.00049 31.3 1.0 64 110-173 150-248 (445)
264 COG0018 ArgS Arginyl-tRNA synt 31.7 3.8E+02 0.0083 26.8 9.6 98 19-144 59-165 (577)
265 PF10567 Nab6_mRNP_bdg: RNA-re 31.0 66 0.0014 28.8 3.7 52 110-161 16-78 (309)
266 COG0150 PurM Phosphoribosylami 30.2 24 0.00052 32.3 0.9 50 18-68 273-322 (345)
267 PF07530 PRE_C2HC: Associated 28.4 1.8E+02 0.0039 19.9 4.8 59 21-82 2-64 (68)
268 KOG4019 Calcineurin-mediated s 27.3 51 0.0011 27.3 2.2 63 111-175 12-79 (193)
269 PF03439 Spt5-NGN: Early trans 26.3 1.3E+02 0.0029 21.3 4.1 32 141-172 38-69 (84)
270 PRK11901 hypothetical protein; 25.9 3.5E+02 0.0077 24.7 7.5 61 108-172 244-309 (327)
271 PF08544 GHMP_kinases_C: GHMP 25.9 2.2E+02 0.0048 19.5 5.9 44 124-168 37-80 (85)
272 TIGR03636 L23_arch archaeal ri 24.7 2.5E+02 0.0055 19.7 6.8 56 112-167 16-74 (77)
273 PRK05738 rplW 50S ribosomal pr 24.5 2.2E+02 0.0048 20.7 5.0 32 7-38 20-53 (92)
274 PRK11634 ATP-dependent RNA hel 23.2 2.4E+02 0.0051 28.5 6.6 86 17-103 498-585 (629)
275 PF05036 SPOR: Sporulation rel 23.2 1.4E+02 0.0031 19.9 3.7 60 109-168 4-65 (76)
276 COG0030 KsgA Dimethyladenosine 23.0 1.1E+02 0.0024 27.1 3.7 32 7-38 96-127 (259)
277 PRK08559 nusG transcription an 22.1 3.2E+02 0.0069 21.8 6.1 29 141-169 40-68 (153)
278 PF00403 HMA: Heavy-metal-asso 21.6 2.3E+02 0.0051 18.1 6.1 54 111-166 1-58 (62)
279 COG5193 LHP1 La protein, small 21.5 48 0.001 31.0 1.2 58 6-63 174-244 (438)
280 cd04883 ACT_AcuB C-terminal AC 21.4 2.5E+02 0.0055 18.4 6.3 45 19-63 14-62 (72)
281 PRK10905 cell division protein 21.1 3.2E+02 0.0068 25.0 6.2 60 109-171 247-310 (328)
282 COG5353 Uncharacterized protei 21.0 4E+02 0.0087 21.4 6.0 53 5-57 86-154 (161)
283 cd04882 ACT_Bt0572_2 C-termina 20.9 2.4E+02 0.0052 18.0 5.3 43 21-63 14-58 (65)
284 PF02829 3H: 3H domain; Inter 20.8 2.1E+02 0.0047 21.1 4.3 52 16-67 7-58 (98)
285 PRK11230 glycolate oxidase sub 20.6 2.3E+02 0.0049 27.7 5.7 60 7-66 190-255 (499)
286 KOG2187 tRNA uracil-5-methyltr 20.4 87 0.0019 30.5 2.7 41 45-85 63-103 (534)
287 cd04904 ACT_AAAH ACT domain of 20.3 2.9E+02 0.0063 18.8 5.4 49 19-67 13-65 (74)
No 1
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=8.6e-31 Score=208.47 Aligned_cols=186 Identities=60% Similarity=1.026 Sum_probs=162.2
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEccCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEc
Q 020783 1 MSSRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (321)
Q Consensus 1 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a 80 (321)
|+++.+++|||||||.++.+.||.+||.+||.|.+|.|+....+..||||+|+++.+|+.||..-||..++|..|.|+++
T Consensus 1 ~~gr~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 1 MSGRNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred CCCcccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 78999999999999999999999999999999999999887778899999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCC------CCCCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCCCcEEEEEe
Q 020783 81 HGGRRHSSSMDRYSS------YSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDY 154 (321)
Q Consensus 81 ~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~afV~f 154 (321)
............+.. -.++...+++..+..+|.|.+||+..+|+||+++|.+.|.|++..+..+. ++.|+|
T Consensus 81 rggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rDg---~GvV~~ 157 (241)
T KOG0105|consen 81 RGGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRDG---VGVVEY 157 (241)
T ss_pred cCCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeeccc---ceeeee
Confidence 988744333221111 11123456788899999999999999999999999999999999999885 899999
Q ss_pred CCHHHHHHHHHHhCCCcccCccceeEEEEEecCCC
Q 020783 155 TSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDSR 189 (321)
Q Consensus 155 ~~~~~a~~A~~~l~g~~~~g~~~~~~i~v~~~~~~ 189 (321)
...++++.|+.+|+...+...-...+|++......
T Consensus 158 ~r~eDMkYAvr~ld~~~~~seGe~~yirv~~~~~~ 192 (241)
T KOG0105|consen 158 LRKEDMKYAVRKLDDQKFRSEGETAYIRVRGDENR 192 (241)
T ss_pred eehhhHHHHHHhhccccccCcCcEeeEEecccCCC
Confidence 99999999999999999877556788888776554
No 2
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.97 E-value=7.2e-30 Score=232.75 Aligned_cols=163 Identities=26% Similarity=0.365 Sum_probs=142.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEc---cCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEc
Q 020783 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLK---IPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (321)
Q Consensus 4 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~---~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a 80 (321)
.+.++|||+|||+++|+++|+++|+.||+|++|+|. .+++++|||||+|.++++|++|++.|||..|.+++|+|.++
T Consensus 105 ~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a 184 (346)
T TIGR01659 105 NSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYA 184 (346)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeecc
Confidence 467899999999999999999999999999999994 46788999999999999999999999999999999999998
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCC----CcEEEEEeCC
Q 020783 81 HGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTS 156 (321)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~----~g~afV~f~~ 156 (321)
..... ....++|||.|||..+++++|+++|.+||.|..+.|..+.. .++|||+|.+
T Consensus 185 ~p~~~--------------------~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~ 244 (346)
T TIGR01659 185 RPGGE--------------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNK 244 (346)
T ss_pred ccccc--------------------ccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECC
Confidence 64321 11245899999999999999999999999999999998753 3699999999
Q ss_pred HHHHHHHHHHhCCCcccCccceeEEEEEecCC
Q 020783 157 YDDMKYAIRKLDRSEFRNAFSRSYVRVREYDS 188 (321)
Q Consensus 157 ~~~a~~A~~~l~g~~~~g~~~~~~i~v~~~~~ 188 (321)
.++|++|++.||+..+.+.. ..|.|.....
T Consensus 245 ~e~A~~Ai~~lng~~~~g~~--~~l~V~~a~~ 274 (346)
T TIGR01659 245 REEAQEAISALNNVIPEGGS--QPLTVRLAEE 274 (346)
T ss_pred HHHHHHHHHHhCCCccCCCc--eeEEEEECCc
Confidence 99999999999999997743 4566655443
No 3
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.96 E-value=5.3e-28 Score=231.69 Aligned_cols=171 Identities=20% Similarity=0.320 Sum_probs=143.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEc---cCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEcc
Q 020783 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLK---IPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (321)
Q Consensus 5 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~---~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a~ 81 (321)
..++|||||||+++|+++|+++|.+||.|.+|.|. .+++++|||||+|.+.++|++|++.|||..|+|+.|.|.+..
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~ 185 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 185 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccc
Confidence 45899999999999999999999999999999994 468899999999999999999999999999999999998644
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCC----CcEEEEEeCCH
Q 020783 82 GGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSY 157 (321)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~----~g~afV~f~~~ 157 (321)
......... ...........+|||+||+.++++++|+++|+.||.|..+.+..+.. .|||||+|.+.
T Consensus 186 ~~p~a~~~~---------~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~ 256 (612)
T TIGR01645 186 NMPQAQPII---------DMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNL 256 (612)
T ss_pred ccccccccc---------ccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCH
Confidence 321110000 00001112346899999999999999999999999999999998753 47999999999
Q ss_pred HHHHHHHHHhCCCcccCccceeEEEEEecCC
Q 020783 158 DDMKYAIRKLDRSEFRNAFSRSYVRVREYDS 188 (321)
Q Consensus 158 ~~a~~A~~~l~g~~~~g~~~~~~i~v~~~~~ 188 (321)
++|.+|++.||+..++| ..|+|.....
T Consensus 257 e~A~kAI~amNg~elgG----r~LrV~kAi~ 283 (612)
T TIGR01645 257 QSQSEAIASMNLFDLGG----QYLRVGKCVT 283 (612)
T ss_pred HHHHHHHHHhCCCeeCC----eEEEEEecCC
Confidence 99999999999999999 8888876543
No 4
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.96 E-value=7e-28 Score=223.04 Aligned_cols=161 Identities=22% Similarity=0.374 Sum_probs=141.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEc---cCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEcc
Q 020783 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLK---IPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (321)
Q Consensus 5 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~---~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a~ 81 (321)
+.++|||+|||+++|+++|+++|++||+|.+|+|+ .+++++|||||+|.+.++|++|+..|||..|.|+.|.|.++.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 57899999999999999999999999999999995 367899999999999999999999999999999999999987
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcC----CCcEEEEEeCCH
Q 020783 82 GGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDR----GGMTGIVDYTSY 157 (321)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~----~~g~afV~f~~~ 157 (321)
+.... ....+|||+|||..+++++|+++|.+||.|..+.+..+. ..|||||+|.+.
T Consensus 82 ~~~~~--------------------~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~ 141 (352)
T TIGR01661 82 PSSDS--------------------IKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKR 141 (352)
T ss_pred ccccc--------------------cccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCH
Confidence 53311 123579999999999999999999999999999998764 347999999999
Q ss_pred HHHHHHHHHhCCCcccCccceeEEEEEecC
Q 020783 158 DDMKYAIRKLDRSEFRNAFSRSYVRVREYD 187 (321)
Q Consensus 158 ~~a~~A~~~l~g~~~~g~~~~~~i~v~~~~ 187 (321)
++|+.|++.|||..+.|.. ..|.+....
T Consensus 142 ~~A~~ai~~l~g~~~~g~~--~~i~v~~a~ 169 (352)
T TIGR01661 142 DEADRAIKTLNGTTPSGCT--EPITVKFAN 169 (352)
T ss_pred HHHHHHHHHhCCCccCCCc--eeEEEEECC
Confidence 9999999999999998854 345665543
No 5
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.95 E-value=5e-27 Score=224.71 Aligned_cols=172 Identities=20% Similarity=0.282 Sum_probs=145.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcc---CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEE
Q 020783 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (321)
Q Consensus 3 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~---~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~ 79 (321)
+++.++|||+|||+.+|+++|.++|++||.|.+|.|+. ++.++|||||+|.+.++|++||. |+|..+.|+.|.|.+
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~ 164 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQS 164 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEee
Confidence 45688999999999999999999999999999999954 57889999999999999999998 999999999999998
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCCC----cEEEEEeC
Q 020783 80 AHGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYT 155 (321)
Q Consensus 80 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~----g~afV~f~ 155 (321)
+............ ......+...+|||+|||..+++++|+++|.+||.|..|.+..+..+ |||||+|.
T Consensus 165 ~~~~~~~~~~~~~--------~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~ 236 (457)
T TIGR01622 165 SQAEKNRAAKAAT--------HQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFH 236 (457)
T ss_pred cchhhhhhhhccc--------ccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEEC
Confidence 7543322111000 00001123679999999999999999999999999999999987654 69999999
Q ss_pred CHHHHHHHHHHhCCCcccCccceeEEEEEecC
Q 020783 156 SYDDMKYAIRKLDRSEFRNAFSRSYVRVREYD 187 (321)
Q Consensus 156 ~~~~a~~A~~~l~g~~~~g~~~~~~i~v~~~~ 187 (321)
+.++|..|+..|||..+.| ..|.|....
T Consensus 237 ~~e~A~~A~~~l~g~~i~g----~~i~v~~a~ 264 (457)
T TIGR01622 237 DAEEAKEALEVMNGFELAG----RPIKVGYAQ 264 (457)
T ss_pred CHHHHHHHHHhcCCcEECC----EEEEEEEcc
Confidence 9999999999999999999 778777654
No 6
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.95 E-value=3.3e-26 Score=211.88 Aligned_cols=180 Identities=23% Similarity=0.302 Sum_probs=142.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcc---CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCC--ceEEEEE
Q 020783 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDG--YRLRVEL 79 (321)
Q Consensus 5 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~---~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g--~~i~V~~ 79 (321)
..++|||+|||+++++++|.++|++||.|..+.+.. ++.++|||||+|.+.++|+.|++.|||..+.| ..|.|.+
T Consensus 88 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~ 167 (352)
T TIGR01661 88 KGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKF 167 (352)
T ss_pred ccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 467899999999999999999999999999999854 46789999999999999999999999999987 5688888
Q ss_pred ccCCCCCCCCCC------------CCCCCC------------------------------------------------CC
Q 020783 80 AHGGRRHSSSMD------------RYSSYS------------------------------------------------SG 99 (321)
Q Consensus 80 a~~~~~~~~~~~------------~~~~~~------------------------------------------------~~ 99 (321)
+........... ...... ..
T Consensus 168 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (352)
T TIGR01661 168 ANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASPP 247 (352)
T ss_pred CCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCCc
Confidence 865431100000 000000 00
Q ss_pred ------------CCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcC----CCcEEEEEeCCHHHHHHH
Q 020783 100 ------------GSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDR----GGMTGIVDYTSYDDMKYA 163 (321)
Q Consensus 100 ------------~~~~~~~~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~----~~g~afV~f~~~~~a~~A 163 (321)
.........+.+|||+|||.++++++|.++|.+||.|..+.|..+. .+|||||+|.+.++|..|
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~A 327 (352)
T TIGR01661 248 ATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMA 327 (352)
T ss_pred cccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHH
Confidence 0000001223479999999999999999999999999999999886 347999999999999999
Q ss_pred HHHhCCCcccCccceeEEEEEecCC
Q 020783 164 IRKLDRSEFRNAFSRSYVRVREYDS 188 (321)
Q Consensus 164 ~~~l~g~~~~g~~~~~~i~v~~~~~ 188 (321)
+..|||..+.| +.|+|.....
T Consensus 328 i~~lnG~~~~g----r~i~V~~~~~ 348 (352)
T TIGR01661 328 ILSLNGYTLGN----RVLQVSFKTN 348 (352)
T ss_pred HHHhCCCEECC----eEEEEEEccC
Confidence 99999999999 7888876543
No 7
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=2.7e-27 Score=199.07 Aligned_cols=169 Identities=19% Similarity=0.313 Sum_probs=144.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEc---cCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEccC
Q 020783 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLK---IPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (321)
Q Consensus 6 ~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~---~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a~~ 82 (321)
...||||.|.+.++-++|++.|.+||+|.+++|. .|+++||||||.|.+.++|+.||+.|||..|+++.|+-.||..
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATR 141 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATR 141 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccccc
Confidence 4579999999999999999999999999999994 4789999999999999999999999999999999999999875
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCCCcEEEEEeCCHHHHHH
Q 020783 83 GRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKY 162 (321)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~afV~f~~~~~a~~ 162 (321)
+..... .....=..-...+.+.+++||++|++..+++++|++.|..||+|..|.+.++.. |+||.|++.|.|.+
T Consensus 142 Kp~e~n----~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~qG--YaFVrF~tkEaAah 215 (321)
T KOG0148|consen 142 KPSEMN----GKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKDQG--YAFVRFETKEAAAH 215 (321)
T ss_pred CccccC----CCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecccc--eEEEEecchhhHHH
Confidence 541111 000000011345567889999999999999999999999999999999998865 99999999999999
Q ss_pred HHHHhCCCcccCccceeE
Q 020783 163 AIRKLDRSEFRNAFSRSY 180 (321)
Q Consensus 163 A~~~l~g~~~~g~~~~~~ 180 (321)
||..+|+.++.|+..++.
T Consensus 216 AIv~mNntei~G~~VkCs 233 (321)
T KOG0148|consen 216 AIVQMNNTEIGGQLVRCS 233 (321)
T ss_pred HHHHhcCceeCceEEEEe
Confidence 999999999999654433
No 8
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.94 E-value=9.3e-26 Score=216.36 Aligned_cols=170 Identities=16% Similarity=0.185 Sum_probs=140.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEccCCCCCcEEEEEEcCHHHHHHHHHh--cCCcccCCceEEEEEccC
Q 020783 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRG--RDGYNFDGYRLRVELAHG 82 (321)
Q Consensus 5 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~~~~~kg~aFVeF~~~e~A~~A~~~--l~g~~i~g~~i~V~~a~~ 82 (321)
|+++|||+|||+++|+++|+++|++||.|..|.++. .++||||+|++.++|++|++. +++..|.|+.|.|.++..
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~---~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~ 77 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLP---GKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTS 77 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEC---CCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCC
Confidence 689999999999999999999999999999999974 479999999999999999986 478999999999999975
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCCCcEEEEEeCCHHHHHH
Q 020783 83 GRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKY 162 (321)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~afV~f~~~~~a~~ 162 (321)
........ .. ...........|+|.||+..+++++|.++|..||.|..|.+..+...++|||+|.+.++|.+
T Consensus 78 ~~~~~~~~---~~-----~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~~~~afVef~~~~~A~~ 149 (481)
T TIGR01649 78 QEIKRDGN---SD-----FDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNNVFQALVEFESVNSAQH 149 (481)
T ss_pred cccccCCC---Cc-----ccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCCceEEEEEECCHHHHHH
Confidence 43211100 00 00011123457999999999999999999999999999999887766799999999999999
Q ss_pred HHHHhCCCcccCccceeEEEEEecC
Q 020783 163 AIRKLDRSEFRNAFSRSYVRVREYD 187 (321)
Q Consensus 163 A~~~l~g~~~~g~~~~~~i~v~~~~ 187 (321)
|++.|||..+.|.. ..|++...+
T Consensus 150 A~~~Lng~~i~~~~--~~l~v~~sk 172 (481)
T TIGR01649 150 AKAALNGADIYNGC--CTLKIEYAK 172 (481)
T ss_pred HHHHhcCCcccCCc--eEEEEEEec
Confidence 99999999997632 456665544
No 9
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.94 E-value=4.9e-26 Score=223.04 Aligned_cols=157 Identities=24% Similarity=0.393 Sum_probs=137.9
Q ss_pred eEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcc---CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEccCCC
Q 020783 8 TLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGR 84 (321)
Q Consensus 8 ~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~---~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a~~~~ 84 (321)
+|||||||+++||++|+++|++||.|.+|+|.. +++++|||||+|.+.++|++|+..||+..|.|+.|+|.|+....
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~ 81 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDP 81 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccc
Confidence 699999999999999999999999999999954 57889999999999999999999999999999999999975332
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCC---CcEEEEEeCCHHHHH
Q 020783 85 RHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG---GMTGIVDYTSYDDMK 161 (321)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~---~g~afV~f~~~~~a~ 161 (321)
... .....+|||+|||.++++++|.++|++||.|..|.+..+.. .|||||+|.+.++|.
T Consensus 82 ~~~------------------~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~ 143 (562)
T TIGR01628 82 SLR------------------RSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAK 143 (562)
T ss_pred ccc------------------ccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHH
Confidence 111 11234799999999999999999999999999999988753 479999999999999
Q ss_pred HHHHHhCCCcccCccceeEEEEEec
Q 020783 162 YAIRKLDRSEFRNAFSRSYVRVREY 186 (321)
Q Consensus 162 ~A~~~l~g~~~~g~~~~~~i~v~~~ 186 (321)
+|++.+||..+.| ..|.+...
T Consensus 144 ~Ai~~lng~~~~~----~~i~v~~~ 164 (562)
T TIGR01628 144 AAIQKVNGMLLND----KEVYVGRF 164 (562)
T ss_pred HHHHHhcccEecC----ceEEEecc
Confidence 9999999999999 66666443
No 10
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.94 E-value=9.1e-25 Score=209.19 Aligned_cols=175 Identities=22% Similarity=0.325 Sum_probs=136.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcc--CCCCCcEEEEEEcCHHHHHHHHHhcCCcccC-CceEEEEEccC
Q 020783 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFD-GYRLRVELAHG 82 (321)
Q Consensus 6 ~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~--~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~-g~~i~V~~a~~ 82 (321)
.++|||+|||++++|++|+++|++||.|.+|+|+. ++.++|||||+|.+.++|++||+.||+..+. |+.|.|..+..
T Consensus 58 ~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S~~ 137 (578)
T TIGR01648 58 GCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCISVD 137 (578)
T ss_pred CCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccccccc
Confidence 58999999999999999999999999999999954 5789999999999999999999999998885 77776654431
Q ss_pred CCCC-----CC--------------------------CCCCCC--CC-----C--------------------CC-----
Q 020783 83 GRRH-----SS--------------------------SMDRYS--SY-----S--------------------SG----- 99 (321)
Q Consensus 83 ~~~~-----~~--------------------------~~~~~~--~~-----~--------------------~~----- 99 (321)
.... +. ..+... .+ . +.
T Consensus 138 ~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~Vd 217 (578)
T TIGR01648 138 NCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAVD 217 (578)
T ss_pred CceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEEE
Confidence 1000 00 000000 00 0 00
Q ss_pred ---CC---CCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhc--CCcEEEEEEEcCCCcEEEEEeCCHHHHHHHHHHhCCCc
Q 020783 100 ---GS---RGVSRRSDYRVLVTGLPSSASWQDLKDHMRRA--GDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSE 171 (321)
Q Consensus 100 ---~~---~~~~~~~~~~i~V~nl~~~~t~~~l~~~f~~~--G~i~~~~i~~~~~~g~afV~f~~~~~a~~A~~~l~g~~ 171 (321)
.. .........+|||+||+..+++++|+++|.+| |.|+.|.+..+ ||||+|.+.++|++|++.||+..
T Consensus 218 wA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~rg----fAFVeF~s~e~A~kAi~~lnG~~ 293 (578)
T TIGR01648 218 WAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIRD----YAFVHFEDREDAVKAMDELNGKE 293 (578)
T ss_pred eecccccccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeecC----eEEEEeCCHHHHHHHHHHhCCCE
Confidence 00 00112235689999999999999999999999 99999988765 99999999999999999999999
Q ss_pred ccCccceeEEEEEecCC
Q 020783 172 FRNAFSRSYVRVREYDS 188 (321)
Q Consensus 172 ~~g~~~~~~i~v~~~~~ 188 (321)
+.| +.|.|.....
T Consensus 294 i~G----r~I~V~~Akp 306 (578)
T TIGR01648 294 LEG----SEIEVTLAKP 306 (578)
T ss_pred ECC----EEEEEEEccC
Confidence 999 7888876654
No 11
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.94 E-value=4.5e-25 Score=211.67 Aligned_cols=181 Identities=20% Similarity=0.263 Sum_probs=140.9
Q ss_pred CCCCeEEEcCCCC-CCCHHHHHHHHhccCCeeEEEEccCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEccC
Q 020783 4 RSSRTLYVGNLPG-DTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (321)
Q Consensus 4 ~~~~~l~V~nLp~-~~te~~L~~~F~~~G~I~~v~l~~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a~~ 82 (321)
.++++|||+|||+ .+|+++|+++|+.||.|..|+++.+ .+|||||+|.+.++|..|+..|||..|.|+.|.|.+++.
T Consensus 273 ~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~--~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~ 350 (481)
T TIGR01649 273 GPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKN--KKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQ 350 (481)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccc
Confidence 4678999999998 6999999999999999999999764 379999999999999999999999999999999999876
Q ss_pred CCCCCCCC----CC---CCCCCCCC--C--------CCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCC--cEEEEEEE
Q 020783 83 GRRHSSSM----DR---YSSYSSGG--S--------RGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGD--VCFSQVFR 143 (321)
Q Consensus 83 ~~~~~~~~----~~---~~~~~~~~--~--------~~~~~~~~~~i~V~nl~~~~t~~~l~~~f~~~G~--i~~~~i~~ 143 (321)
........ +. ...+.... + .....++..+|||.|||..+++++|+++|+.||. +..+.+..
T Consensus 351 ~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik~~~ 430 (481)
T TIGR01649 351 QNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPLSVSEEDLKELFAENGVHKVKKFKFFP 430 (481)
T ss_pred ccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecCCCCCCHHHHHHHHHhcCCccceEEEEec
Confidence 53222110 00 01111110 0 0011235678999999999999999999999998 77787765
Q ss_pred cC--CCcEEEEEeCCHHHHHHHHHHhCCCcccCccce--eEEEEEec
Q 020783 144 DR--GGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSR--SYVRVREY 186 (321)
Q Consensus 144 ~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~--~~i~v~~~ 186 (321)
.. ..++|||+|.+.++|.+|+..||+..+.++... -.|++...
T Consensus 431 ~~~~~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~lkv~fs 477 (481)
T TIGR01649 431 KDNERSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYHLKVSFS 477 (481)
T ss_pred CCCCcceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccceEEEEec
Confidence 43 246999999999999999999999999985311 13555544
No 12
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.94 E-value=2.3e-26 Score=195.23 Aligned_cols=144 Identities=29% Similarity=0.536 Sum_probs=133.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEccCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEccCCCCC
Q 020783 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRH 86 (321)
Q Consensus 7 ~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a~~~~~~ 86 (321)
-.|||||||..+++.+|+.+|++||+|.+|+|. |.||||-.++...|+.|+..|+|..|+|..|.|+.++++.+.
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIv-----KNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKsk~ 77 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIV-----KNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKSKA 77 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeee-----cccceEEeecccccHHHHhhcccceecceEEEEEeccccCCC
Confidence 369999999999999999999999999999999 889999999999999999999999999999999999877533
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCCCcEEEEEeCCHHHHHHHHHH
Q 020783 87 SSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRK 166 (321)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~afV~f~~~~~a~~A~~~ 166 (321)
. ++++|+|+.+.++.++|++.|++||+|+.++|.++ |+||.|+-.++|..|++.
T Consensus 78 s----------------------tkl~vgNis~tctn~ElRa~fe~ygpviecdivkd----y~fvh~d~~eda~~air~ 131 (346)
T KOG0109|consen 78 S----------------------TKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD----YAFVHFDRAEDAVEAIRG 131 (346)
T ss_pred c----------------------cccccCCCCccccCHHHhhhhcccCCceeeeeecc----eeEEEEeeccchHHHHhc
Confidence 3 38999999999999999999999999999999999 999999999999999999
Q ss_pred hCCCcccCccceeEE
Q 020783 167 LDRSEFRNAFSRSYV 181 (321)
Q Consensus 167 l~g~~~~g~~~~~~i 181 (321)
||+.++.|+..+..+
T Consensus 132 l~~~~~~gk~m~vq~ 146 (346)
T KOG0109|consen 132 LDNTEFQGKRMHVQL 146 (346)
T ss_pred ccccccccceeeeee
Confidence 999999995544433
No 13
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.93 E-value=9.8e-25 Score=211.63 Aligned_cols=177 Identities=19% Similarity=0.266 Sum_probs=136.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcc------------CCeeEEEEccCCCCCcEEEEEEcCHHHHHHHHHhcCCccc
Q 020783 3 SRSSRTLYVGNLPGDTRMREVEDLFYKY------------GPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNF 70 (321)
Q Consensus 3 ~~~~~~l~V~nLp~~~te~~L~~~F~~~------------G~I~~v~l~~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i 70 (321)
++..++|||||||+++|+++|.++|.+| +.|..+.+ +..+|||||+|.+.++|..||. |||..|
T Consensus 172 ~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~---~~~kg~afVeF~~~e~A~~Al~-l~g~~~ 247 (509)
T TIGR01642 172 TRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI---NKEKNFAFLEFRTVEEATFAMA-LDSIIY 247 (509)
T ss_pred CccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE---CCCCCEEEEEeCCHHHHhhhhc-CCCeEe
Confidence 4567899999999999999999999975 24444444 3458999999999999999996 999999
Q ss_pred CCceEEEEEccCCCCCCCCCCCCC-----CCCC----CCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEE
Q 020783 71 DGYRLRVELAHGGRRHSSSMDRYS-----SYSS----GGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQV 141 (321)
Q Consensus 71 ~g~~i~V~~a~~~~~~~~~~~~~~-----~~~~----~~~~~~~~~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i 141 (321)
.|+.|.|.........+....... .... ............+|||+|||..+++++|.++|..||.|..+.+
T Consensus 248 ~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~ 327 (509)
T TIGR01642 248 SNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNL 327 (509)
T ss_pred eCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEE
Confidence 999999976543321111000000 0000 0011112345679999999999999999999999999999999
Q ss_pred EEcC----CCcEEEEEeCCHHHHHHHHHHhCCCcccCccceeEEEEEecC
Q 020783 142 FRDR----GGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYD 187 (321)
Q Consensus 142 ~~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~i~v~~~~ 187 (321)
..+. ..|||||+|.+.++|..|+..|||..+.| ..|.|....
T Consensus 328 ~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~----~~l~v~~a~ 373 (509)
T TIGR01642 328 IKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGD----NKLHVQRAC 373 (509)
T ss_pred EecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECC----eEEEEEECc
Confidence 8764 34799999999999999999999999999 677776654
No 14
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.93 E-value=2.7e-24 Score=208.59 Aligned_cols=178 Identities=20% Similarity=0.302 Sum_probs=138.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcc---CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEcc
Q 020783 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (321)
Q Consensus 5 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~---~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a~ 81 (321)
+.++|||+|||+.+|+++|.++|+.||.|..+.|.. +|.++|||||+|.+.++|..|+..|||..|.|+.|.|.++.
T Consensus 294 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~ 373 (509)
T TIGR01642 294 SKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRAC 373 (509)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECc
Confidence 457999999999999999999999999999999843 67899999999999999999999999999999999999987
Q ss_pred CCCCCCCCCCCC--CCCC--CCCC----CCCCCCCCcEEEEeCCCCCC----------CHHHHHHHHHhcCCcEEEEEEE
Q 020783 82 GGRRHSSSMDRY--SSYS--SGGS----RGVSRRSDYRVLVTGLPSSA----------SWQDLKDHMRRAGDVCFSQVFR 143 (321)
Q Consensus 82 ~~~~~~~~~~~~--~~~~--~~~~----~~~~~~~~~~i~V~nl~~~~----------t~~~l~~~f~~~G~i~~~~i~~ 143 (321)
............ .... .... ......+...|+|.|+...- ..++|+++|.+||.|..|.|+.
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~ 453 (509)
T TIGR01642 374 VGANQATIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPR 453 (509)
T ss_pred cCCCCCCccccccccccccccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeec
Confidence 554322211100 0000 0000 00112245678999986421 2367999999999999999986
Q ss_pred cC-------CCcEEEEEeCCHHHHHHHHHHhCCCcccCccceeEEEEEec
Q 020783 144 DR-------GGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREY 186 (321)
Q Consensus 144 ~~-------~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~i~v~~~ 186 (321)
+. ..|+|||+|.+.++|++|+..|||..|.| +.|.+...
T Consensus 454 ~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~g----r~v~~~~~ 499 (509)
T TIGR01642 454 PNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFND----RVVVAAFY 499 (509)
T ss_pred cCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECC----eEEEEEEe
Confidence 52 23799999999999999999999999999 67766554
No 15
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.92 E-value=1.8e-24 Score=212.03 Aligned_cols=178 Identities=19% Similarity=0.311 Sum_probs=144.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcc--CCCCCcEEEEEEcCHHHHHHHHHhcCCcccC----CceEEEE
Q 020783 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFD----GYRLRVE 78 (321)
Q Consensus 5 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~--~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~----g~~i~V~ 78 (321)
..++|||+|||+++|+++|+++|+.||+|..+.+.. ++.++|||||+|.+.++|.+|++.|||..+. |+.|.|.
T Consensus 177 ~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v~ 256 (562)
T TIGR01628 177 KFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLYVG 256 (562)
T ss_pred CCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeEee
Confidence 457899999999999999999999999999999954 4678999999999999999999999999999 9999998
Q ss_pred EccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCC---CcEEEEEeC
Q 020783 79 LAHGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG---GMTGIVDYT 155 (321)
Q Consensus 79 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~---~g~afV~f~ 155 (321)
++.......... ...+..............+|||+||+..+++++|+++|.+||.|..+.+..+.. +|||||+|.
T Consensus 257 ~a~~k~er~~~~--~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~~g~~~g~gfV~f~ 334 (562)
T TIGR01628 257 RAQKRAEREAEL--RRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDEKGVSRGFGFVCFS 334 (562)
T ss_pred cccChhhhHHHH--HhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECCCCCcCCeEEEEeC
Confidence 876543221000 000000000111233456899999999999999999999999999999998743 479999999
Q ss_pred CHHHHHHHHHHhCCCcccCccceeEEEEEecCC
Q 020783 156 SYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDS 188 (321)
Q Consensus 156 ~~~~a~~A~~~l~g~~~~g~~~~~~i~v~~~~~ 188 (321)
+.++|.+|+..|||..+.| ..|.|.....
T Consensus 335 ~~~~A~~A~~~~~g~~~~g----k~l~V~~a~~ 363 (562)
T TIGR01628 335 NPEEANRAVTEMHGRMLGG----KPLYVALAQR 363 (562)
T ss_pred CHHHHHHHHHHhcCCeeCC----ceeEEEeccC
Confidence 9999999999999999999 6777765543
No 16
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.92 E-value=1.7e-23 Score=200.35 Aligned_cols=176 Identities=20% Similarity=0.297 Sum_probs=137.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcc---CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEccC
Q 020783 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (321)
Q Consensus 6 ~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~---~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a~~ 82 (321)
.++|||+|||+++|+++|.++|++||.|..|.+.. ++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++..
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccC
Confidence 58999999999999999999999999999999954 467899999999999999999999999999999999999763
Q ss_pred CCCCCCCCC------------------------------C---CCCCCCC----------------C-------------
Q 020783 83 GRRHSSSMD------------------------------R---YSSYSSG----------------G------------- 100 (321)
Q Consensus 83 ~~~~~~~~~------------------------------~---~~~~~~~----------------~------------- 100 (321)
......... . .....+. .
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (457)
T TIGR01622 266 STYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNIPSRYATGALA 345 (457)
T ss_pred CCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhccccccccccccccccccccccc
Confidence 321110000 0 0000000 0
Q ss_pred -----CCCC---CCCCCcEEEEeCCCCCCC----------HHHHHHHHHhcCCcEEEEEEEcCCCcEEEEEeCCHHHHHH
Q 020783 101 -----SRGV---SRRSDYRVLVTGLPSSAS----------WQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKY 162 (321)
Q Consensus 101 -----~~~~---~~~~~~~i~V~nl~~~~t----------~~~l~~~f~~~G~i~~~~i~~~~~~g~afV~f~~~~~a~~ 162 (321)
...+ .......|+|.|+....+ .+||.+.|.+||.|..+.+......|++||+|.+.++|..
T Consensus 346 ~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~v~v~~~~~~G~~fV~F~~~e~A~~ 425 (457)
T TIGR01622 346 IMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVVHIYVDTKNSAGKIYLKFSSVDAALA 425 (457)
T ss_pred cccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEEEeCCCCceeEEEEECCHHHHHH
Confidence 0000 113456788888855443 3689999999999999999877777899999999999999
Q ss_pred HHHHhCCCcccCccceeEEEEEe
Q 020783 163 AIRKLDRSEFRNAFSRSYVRVRE 185 (321)
Q Consensus 163 A~~~l~g~~~~g~~~~~~i~v~~ 185 (321)
|++.|||..|+| +.|.+..
T Consensus 426 A~~~lnGr~f~g----r~i~~~~ 444 (457)
T TIGR01622 426 AFQALNGRYFGG----KMITAAF 444 (457)
T ss_pred HHHHhcCcccCC----eEEEEEE
Confidence 999999999999 6676654
No 17
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.91 E-value=1e-23 Score=176.51 Aligned_cols=163 Identities=23% Similarity=0.363 Sum_probs=144.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEE---ccCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEc
Q 020783 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDL---KIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (321)
Q Consensus 4 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l---~~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a 80 (321)
...++|.|.-||.++|++||+.||...|+|++|++ +.+|++-||+||-|-++++|++|+..|||..+..+.|+|.||
T Consensus 39 ~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyA 118 (360)
T KOG0145|consen 39 ESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYA 118 (360)
T ss_pred cccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEec
Confidence 34578999999999999999999999999999999 557899999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCCC----cEEEEEeCC
Q 020783 81 HGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTS 156 (321)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~----g~afV~f~~ 156 (321)
.+.... .....+||.+||..++..+|+++|.+||.|....|..+... |.+||.|+.
T Consensus 119 RPSs~~--------------------Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDK 178 (360)
T KOG0145|consen 119 RPSSDS--------------------IKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDK 178 (360)
T ss_pred cCChhh--------------------hcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecc
Confidence 865432 23357999999999999999999999999999888877543 699999999
Q ss_pred HHHHHHHHHHhCCCcccCccceeEEEEEecCC
Q 020783 157 YDDMKYAIRKLDRSEFRNAFSRSYVRVREYDS 188 (321)
Q Consensus 157 ~~~a~~A~~~l~g~~~~g~~~~~~i~v~~~~~ 188 (321)
..+|++|++.|||....|.. ..|.|+....
T Consensus 179 r~EAe~AIk~lNG~~P~g~t--epItVKFann 208 (360)
T KOG0145|consen 179 RIEAEEAIKGLNGQKPSGCT--EPITVKFANN 208 (360)
T ss_pred hhHHHHHHHhccCCCCCCCC--CCeEEEecCC
Confidence 99999999999999999966 5577776543
No 18
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.91 E-value=1.9e-23 Score=186.94 Aligned_cols=174 Identities=24% Similarity=0.316 Sum_probs=137.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcc---CCCCCcEEEEEEcCHHHHHHHHHhcCCccc-CCceEEEEEcc
Q 020783 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNF-DGYRLRVELAH 81 (321)
Q Consensus 6 ~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~---~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i-~g~~i~V~~a~ 81 (321)
.+-||||.||.++.|++|.-||++.|+|-++.|+. +|.++|||||+|.+.+.|++|++.||+..| .|+.|.|..+.
T Consensus 83 G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~Sv 162 (506)
T KOG0117|consen 83 GCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVSV 162 (506)
T ss_pred CceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEee
Confidence 47899999999999999999999999999999954 589999999999999999999999999988 58988888765
Q ss_pred CCCC-------CCC------------------------CCC----CCCCCC-----------------C-------C---
Q 020783 82 GGRR-------HSS------------------------SMD----RYSSYS-----------------S-------G--- 99 (321)
Q Consensus 82 ~~~~-------~~~------------------------~~~----~~~~~~-----------------~-------~--- 99 (321)
.... ..+ ..+ ++-+|- + .
T Consensus 163 an~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~tV 242 (506)
T KOG0117|consen 163 ANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAITV 242 (506)
T ss_pred ecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCccee
Confidence 3211 000 000 000000 0 0
Q ss_pred ----C---CCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCCCcEEEEEeCCHHHHHHHHHHhCCCcc
Q 020783 100 ----G---SRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEF 172 (321)
Q Consensus 100 ----~---~~~~~~~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~ 172 (321)
+ .....+..-..|||.||+.++|++.|+++|.+||.|..|..+.| ||||.|.+.++|.+|++.+||+++
T Consensus 243 dWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD----YaFVHf~eR~davkAm~~~ngkel 318 (506)
T KOG0117|consen 243 DWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD----YAFVHFAEREDAVKAMKETNGKEL 318 (506)
T ss_pred eccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc----eeEEeecchHHHHHHHHHhcCcee
Confidence 0 00011223457999999999999999999999999999999988 999999999999999999999999
Q ss_pred cCccceeEEEEEecC
Q 020783 173 RNAFSRSYVRVREYD 187 (321)
Q Consensus 173 ~g~~~~~~i~v~~~~ 187 (321)
.| ..|.+...+
T Consensus 319 dG----~~iEvtLAK 329 (506)
T KOG0117|consen 319 DG----SPIEVTLAK 329 (506)
T ss_pred cC----ceEEEEecC
Confidence 99 556664433
No 19
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.91 E-value=5.7e-24 Score=189.37 Aligned_cols=165 Identities=21% Similarity=0.399 Sum_probs=140.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcc---CCCCCcEEEEEEcCHHHHHHHHHhcCCccc-CC--ceEEEEE
Q 020783 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNF-DG--YRLRVEL 79 (321)
Q Consensus 6 ~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~---~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i-~g--~~i~V~~ 79 (321)
.-.||||-||.+++|.||+++|++||.|.+|.|++ ++.++|||||.|.+.++|.+|+..|++... .| .+|.|++
T Consensus 34 ~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk~ 113 (510)
T KOG0144|consen 34 AVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVKY 113 (510)
T ss_pred hhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeecc
Confidence 45799999999999999999999999999999944 688999999999999999999999988554 33 5789999
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCCC---cEEEEEeCC
Q 020783 80 AHGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG---MTGIVDYTS 156 (321)
Q Consensus 80 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~---g~afV~f~~ 156 (321)
|...+... ..+.++||+-|+..+++.+++++|.+||.|++|.|..+..+ |+|||.|.+
T Consensus 114 Ad~E~er~-------------------~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fst 174 (510)
T KOG0144|consen 114 ADGERERI-------------------VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFST 174 (510)
T ss_pred cchhhhcc-------------------ccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEeh
Confidence 88665321 23458999999999999999999999999999999998654 799999999
Q ss_pred HHHHHHHHHHhCCCc-ccCccceeEEEEEecCCCCC
Q 020783 157 YDDMKYAIRKLDRSE-FRNAFSRSYVRVREYDSRRS 191 (321)
Q Consensus 157 ~~~a~~A~~~l~g~~-~~g~~~~~~i~v~~~~~~r~ 191 (321)
.+.|..|++.|||.. +.|.. ..+-|+..+..+.
T Consensus 175 ke~A~~Aika~ng~~tmeGcs--~PLVVkFADtqkd 208 (510)
T KOG0144|consen 175 KEMAVAAIKALNGTQTMEGCS--QPLVVKFADTQKD 208 (510)
T ss_pred HHHHHHHHHhhccceeeccCC--CceEEEecccCCC
Confidence 999999999999975 56655 5566666665543
No 20
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.90 E-value=1.7e-23 Score=166.70 Aligned_cols=160 Identities=24% Similarity=0.360 Sum_probs=138.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcc---CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEc
Q 020783 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (321)
Q Consensus 4 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~---~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a 80 (321)
+...|||||||+..++++.|.++|-+.|+|.++.++. +...+|||||||.++|+|+-|++.||...+-|++|+|..+
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 5678999999999999999999999999999999965 5678999999999999999999999999999999999988
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEE-EEEEEcCC----CcEEEEEeC
Q 020783 81 HGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCF-SQVFRDRG----GMTGIVDYT 155 (321)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~-~~i~~~~~----~g~afV~f~ 155 (321)
..... ....+..+||+||.+.+++..|.+.|+.||.+.. -.++.++. +++|||.|.
T Consensus 87 s~~~~-------------------nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~ 147 (203)
T KOG0131|consen 87 SAHQK-------------------NLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYA 147 (203)
T ss_pred ccccc-------------------cccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEech
Confidence 73221 1233468999999999999999999999999877 35555544 359999999
Q ss_pred CHHHHHHHHHHhCCCcccCccceeEEEEEec
Q 020783 156 SYDDMKYAIRKLDRSEFRNAFSRSYVRVREY 186 (321)
Q Consensus 156 ~~~~a~~A~~~l~g~~~~g~~~~~~i~v~~~ 186 (321)
+.+.+..|+..|||..+.. +.|++...
T Consensus 148 sfeasd~ai~s~ngq~l~n----r~itv~ya 174 (203)
T KOG0131|consen 148 SFEASDAAIGSMNGQYLCN----RPITVSYA 174 (203)
T ss_pred hHHHHHHHHHHhccchhcC----CceEEEEE
Confidence 9999999999999999999 66666543
No 21
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.89 E-value=3.3e-22 Score=182.82 Aligned_cols=175 Identities=21% Similarity=0.300 Sum_probs=144.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcc---CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEccC
Q 020783 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (321)
Q Consensus 6 ~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~---~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a~~ 82 (321)
..||||++||+.++.++|.++|+.+|+|..+.+.. .+..+|||||.|.-.|+++.|+..+++..|.|+.|.|.+|..
T Consensus 5 g~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~ 84 (678)
T KOG0127|consen 5 GATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKK 84 (678)
T ss_pred CceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceecccccccc
Confidence 48999999999999999999999999999999954 346799999999999999999999999999999999999987
Q ss_pred CCCCCCCCCCCCCCCCC---CC--C--CCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCCC---cEEEE
Q 020783 83 GRRHSSSMDRYSSYSSG---GS--R--GVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG---MTGIV 152 (321)
Q Consensus 83 ~~~~~~~~~~~~~~~~~---~~--~--~~~~~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~---g~afV 152 (321)
......... ....... .. . .-...+.++|.|.|||..+.+.+|+.+|+.||.|..|.|+....+ |||||
T Consensus 85 R~r~e~~~~-~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV 163 (678)
T KOG0127|consen 85 RARSEEVEK-GENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFV 163 (678)
T ss_pred cccchhccc-ccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEE
Confidence 654432110 0000000 00 0 001123789999999999999999999999999999999977655 69999
Q ss_pred EeCCHHHHHHHHHHhCCCcccCccceeEEEEEe
Q 020783 153 DYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 185 (321)
Q Consensus 153 ~f~~~~~a~~A~~~l~g~~~~g~~~~~~i~v~~ 185 (321)
+|....+|..|++.+|+..++| +.|-|+.
T Consensus 164 ~fk~~~dA~~Al~~~N~~~i~g----R~VAVDW 192 (678)
T KOG0127|consen 164 QFKEKKDAEKALEFFNGNKIDG----RPVAVDW 192 (678)
T ss_pred EEeeHHHHHHHHHhccCceecC----ceeEEee
Confidence 9999999999999999999999 6666654
No 22
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.89 E-value=9.3e-23 Score=170.44 Aligned_cols=164 Identities=38% Similarity=0.619 Sum_probs=135.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEccCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEccCCCCC
Q 020783 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRH 86 (321)
Q Consensus 7 ~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a~~~~~~ 86 (321)
..||||+||+.+.+.+|..||..||.|.++.|+ .||+||+|++..+|..|+..||+..|.|..+.|+++......
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk-----~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~~~ 76 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK-----NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKRRG 76 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee-----cccceeccCchhhhhcccchhcCceecceeeeeecccccccc
Confidence 469999999999999999999999999999998 799999999999999999999999999999999998864332
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCCCcEEEEEeCCHHHHHHHHHH
Q 020783 87 SSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRK 166 (321)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~afV~f~~~~~a~~A~~~ 166 (321)
......+...+......++..+...+.|.+++..+.+++|.++|..+|.+.+..+.. +++||+|.+.++|..|+..
T Consensus 77 ~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~~~----~~~~v~Fs~~~da~ra~~~ 152 (216)
T KOG0106|consen 77 RGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDARR----NFAFVEFSEQEDAKRALEK 152 (216)
T ss_pred cCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhhhc----cccceeehhhhhhhhcchh
Confidence 210000000001122344566788999999999999999999999999996655522 3899999999999999999
Q ss_pred hCCCcccCccceeEEEE
Q 020783 167 LDRSEFRNAFSRSYVRV 183 (321)
Q Consensus 167 l~g~~~~g~~~~~~i~v 183 (321)
+++..+.+ +.|.+
T Consensus 153 l~~~~~~~----~~l~~ 165 (216)
T KOG0106|consen 153 LDGKKLNG----RRISV 165 (216)
T ss_pred ccchhhcC----ceeee
Confidence 99999999 66666
No 23
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.89 E-value=8.2e-23 Score=178.52 Aligned_cols=166 Identities=22% Similarity=0.363 Sum_probs=139.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcc---CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEccCC
Q 020783 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (321)
Q Consensus 7 ~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~---~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a~~~ 83 (321)
|+||||.|.+.+.|+.|+..|..||+|++|.|.+ |+++||||||||+-+|.|..|++.|||..++|+.|+|....+-
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsNm 193 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNM 193 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCCC
Confidence 6899999999999999999999999999999944 6899999999999999999999999999999999999743221
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCCC----cEEEEEeCCHHH
Q 020783 84 RRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDD 159 (321)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~----g~afV~f~~~~~ 159 (321)
....+.-+ ........-.+|||..+.++.+++||+..|+.||+|.+|.+..++.+ ||+||||.+...
T Consensus 194 pQAQpiID---------~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs 264 (544)
T KOG0124|consen 194 PQAQPIID---------MVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQS 264 (544)
T ss_pred cccchHHH---------HHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccc
Confidence 10000000 00000123458999999999999999999999999999999988643 699999999999
Q ss_pred HHHHHHHhCCCcccCccceeEEEEEe
Q 020783 160 MKYAIRKLDRSEFRNAFSRSYVRVRE 185 (321)
Q Consensus 160 a~~A~~~l~g~~~~g~~~~~~i~v~~ 185 (321)
..+|+..||-..++| .+++|-.
T Consensus 265 ~~eAiasMNlFDLGG----QyLRVGk 286 (544)
T KOG0124|consen 265 QSEAIASMNLFDLGG----QYLRVGK 286 (544)
T ss_pred hHHHhhhcchhhccc----ceEeccc
Confidence 999999999999999 8888754
No 24
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.89 E-value=6e-22 Score=165.99 Aligned_cols=177 Identities=23% Similarity=0.334 Sum_probs=142.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEc---cCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCC--ceEEEEE
Q 020783 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLK---IPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDG--YRLRVEL 79 (321)
Q Consensus 5 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~---~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g--~~i~V~~ 79 (321)
..-+|||.+||..+|..||+++|++||.|..-.+. .++.++|.|||.|...++|+.|+..|||..-.| .+|.|+|
T Consensus 126 k~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKF 205 (360)
T KOG0145|consen 126 KDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKF 205 (360)
T ss_pred cccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEe
Confidence 34679999999999999999999999999887773 368999999999999999999999999988765 4799999
Q ss_pred ccCCCCCCCCCCCCC-------CCCCC------------------------------------CCCCCCCCCCcEEEEeC
Q 020783 80 AHGGRRHSSSMDRYS-------SYSSG------------------------------------GSRGVSRRSDYRVLVTG 116 (321)
Q Consensus 80 a~~~~~~~~~~~~~~-------~~~~~------------------------------------~~~~~~~~~~~~i~V~n 116 (321)
+..+........... .+.+. ..-++....+|+|||-|
T Consensus 206 annPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~g~ciFvYN 285 (360)
T KOG0145|consen 206 ANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGGGWCIFVYN 285 (360)
T ss_pred cCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCCCCCeeEEEEEe
Confidence 987643221100000 00000 00112234589999999
Q ss_pred CCCCCCHHHHHHHHHhcCCcEEEEEEEcCC----CcEEEEEeCCHHHHHHHHHHhCCCcccCccceeEEEEEe
Q 020783 117 LPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 185 (321)
Q Consensus 117 l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~i~v~~ 185 (321)
|.+++++.-|.++|..||.|..+++..|.. +||+||.+.+.++|..|+..|||+.+++ +-+.|..
T Consensus 286 Lspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~----rvLQVsF 354 (360)
T KOG0145|consen 286 LSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGD----RVLQVSF 354 (360)
T ss_pred cCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccc----eEEEEEE
Confidence 999999999999999999999999999855 4799999999999999999999999999 5555543
No 25
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.87 E-value=1.2e-20 Score=172.70 Aligned_cols=162 Identities=22% Similarity=0.396 Sum_probs=130.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcc--CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEccCC
Q 020783 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (321)
Q Consensus 6 ~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~--~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a~~~ 83 (321)
.-.|.|.|||+.+.+.+|..+|++||.|.+|.|+. +|...|||||+|.+..+|..|+..+||..|+|++|-|.||...
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~K 196 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDK 196 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeeccc
Confidence 45799999999999999999999999999999954 5677799999999999999999999999999999999999866
Q ss_pred CCCCCCC---------------------CCCCCCCCC----------------------------------CC-CC----
Q 020783 84 RRHSSSM---------------------DRYSSYSSG----------------------------------GS-RG---- 103 (321)
Q Consensus 84 ~~~~~~~---------------------~~~~~~~~~----------------------------------~~-~~---- 103 (321)
....... +....+... .. ++
T Consensus 197 d~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~ 276 (678)
T KOG0127|consen 197 DTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKES 276 (678)
T ss_pred ccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccccccccccCcc
Confidence 5433210 000000000 00 00
Q ss_pred ----------CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCCC----cEEEEEeCCHHHHHHHHHHh
Q 020783 104 ----------VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKL 167 (321)
Q Consensus 104 ----------~~~~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~----g~afV~f~~~~~a~~A~~~l 167 (321)
.....+.+|||.|||.++++++|.++|.+||+|.++.+..++.+ |.|||.|.++.+|..||..-
T Consensus 277 ~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~A 354 (678)
T KOG0127|consen 277 DKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAA 354 (678)
T ss_pred cchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhc
Confidence 00112469999999999999999999999999999999987654 69999999999999999776
No 26
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.85 E-value=2.4e-20 Score=147.89 Aligned_cols=80 Identities=49% Similarity=0.803 Sum_probs=74.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEccCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEccCC
Q 020783 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (321)
Q Consensus 4 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a~~~ 83 (321)
.-.+.||||||+..+++.||..+|..||+|..|+|.. .+.|||||||+++.+|++|+..|||..|+|..|.|+++...
T Consensus 8 ~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvAr--nPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~ 85 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVAR--NPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGR 85 (195)
T ss_pred CCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEee--cCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCC
Confidence 3468999999999999999999999999999999965 56899999999999999999999999999999999998866
Q ss_pred CC
Q 020783 84 RR 85 (321)
Q Consensus 84 ~~ 85 (321)
..
T Consensus 86 ~r 87 (195)
T KOG0107|consen 86 PR 87 (195)
T ss_pred cc
Confidence 53
No 27
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.84 E-value=5.2e-20 Score=168.99 Aligned_cols=146 Identities=25% Similarity=0.357 Sum_probs=131.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcc-CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEccCCCC
Q 020783 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI-PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRR 85 (321)
Q Consensus 7 ~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~-~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a~~~~~ 85 (321)
..|||| +++|+..|.++|+.+|+|.++.+-. .+ +-|||||.|.++++|++|+..||...+.|++|++-|+.....
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~t-slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~~ 77 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDAT-SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDPS 77 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecCC-ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCCc
Confidence 469999 9999999999999999999999922 23 999999999999999999999999999999999999764331
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCCC--cEEEEEeCCHHHHHHH
Q 020783 86 HSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG--MTGIVDYTSYDDMKYA 163 (321)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~--g~afV~f~~~~~a~~A 163 (321)
.+||.||+++++..+|.++|..||+|..|.+..+.++ || ||+|++.++|.+|
T Consensus 78 -------------------------~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~a 131 (369)
T KOG0123|consen 78 -------------------------LVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKA 131 (369)
T ss_pred -------------------------eeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHH
Confidence 2999999999999999999999999999999998776 68 9999999999999
Q ss_pred HHHhCCCcccCccceeEEEEEec
Q 020783 164 IRKLDRSEFRNAFSRSYVRVREY 186 (321)
Q Consensus 164 ~~~l~g~~~~g~~~~~~i~v~~~ 186 (321)
++.+||..+.| ..|-+...
T Consensus 132 i~~~ng~ll~~----kki~vg~~ 150 (369)
T KOG0123|consen 132 IEKLNGMLLNG----KKIYVGLF 150 (369)
T ss_pred HHHhcCcccCC----CeeEEeec
Confidence 99999999999 55555443
No 28
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.84 E-value=2.8e-20 Score=175.23 Aligned_cols=164 Identities=23% Similarity=0.399 Sum_probs=136.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcc--CC----CCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEc
Q 020783 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PP----RPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (321)
Q Consensus 7 ~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~--~~----~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a 80 (321)
++|||.||++++|.++|..+|...|.|..+.|.. ++ -+.|||||+|.++++|+.|++.|+|+.|+|+.|.|.++
T Consensus 516 t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S 595 (725)
T KOG0110|consen 516 TKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKIS 595 (725)
T ss_pred hhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEec
Confidence 3499999999999999999999999999998833 22 24599999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcC----CCcEEEEEeCC
Q 020783 81 HGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDR----GGMTGIVDYTS 156 (321)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~----~~g~afV~f~~ 156 (321)
..... .. .+..-+.....+.|+|.|+|..++..+++.+|..||.+..|.|+... ..|||||+|.+
T Consensus 596 ~~k~~-~~----------~gK~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t 664 (725)
T KOG0110|consen 596 ENKPA-ST----------VGKKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLT 664 (725)
T ss_pred cCccc-cc----------cccccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccC
Confidence 82221 11 01122223346799999999999999999999999999999998762 23699999999
Q ss_pred HHHHHHHHHHhCCCcccCccceeEEEEEe
Q 020783 157 YDDMKYAIRKLDRSEFRNAFSRSYVRVRE 185 (321)
Q Consensus 157 ~~~a~~A~~~l~g~~~~g~~~~~~i~v~~ 185 (321)
+.+|..|++.|..+.+-| +++-++.
T Consensus 665 ~~ea~nA~~al~STHlyG----RrLVLEw 689 (725)
T KOG0110|consen 665 PREAKNAFDALGSTHLYG----RRLVLEW 689 (725)
T ss_pred cHHHHHHHHhhcccceec----hhhheeh
Confidence 999999999999999999 5554443
No 29
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.84 E-value=1.7e-19 Score=143.12 Aligned_cols=78 Identities=24% Similarity=0.278 Sum_probs=71.4
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCCCcEEEEEeCCHHHHHHHHHHhCCCcccCccceeEEEEEecC
Q 020783 108 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYD 187 (321)
Q Consensus 108 ~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~i~v~~~~ 187 (321)
.+++|||+||+..+++.||+..|..||++..|.|..++ .|||||||+++.||+.|+..|||..+.| ..|+|+...
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP-PGfAFVEFed~RDA~DAvr~LDG~~~cG----~r~rVE~S~ 83 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP-PGFAFVEFEDPRDAEDAVRYLDGKDICG----SRIRVELST 83 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC-CCceEEeccCcccHHHHHhhcCCccccC----ceEEEEeec
Confidence 35799999999999999999999999999999999954 5699999999999999999999999999 889998876
Q ss_pred CCC
Q 020783 188 SRR 190 (321)
Q Consensus 188 ~~r 190 (321)
...
T Consensus 84 G~~ 86 (195)
T KOG0107|consen 84 GRP 86 (195)
T ss_pred CCc
Confidence 554
No 30
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.82 E-value=2.5e-18 Score=165.33 Aligned_cols=78 Identities=23% Similarity=0.444 Sum_probs=73.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcc---CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEcc
Q 020783 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (321)
Q Consensus 5 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~---~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a~ 81 (321)
..++|||+|||+++++++|+++|+.||+|..+.|.. ++.++|||||+|.+.++|.+|+..|||..|+|+.|+|.++.
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 282 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecC
Confidence 457999999999999999999999999999999954 56789999999999999999999999999999999999987
Q ss_pred C
Q 020783 82 G 82 (321)
Q Consensus 82 ~ 82 (321)
.
T Consensus 283 ~ 283 (612)
T TIGR01645 283 T 283 (612)
T ss_pred C
Confidence 5
No 31
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.81 E-value=4.7e-19 Score=144.00 Aligned_cols=80 Identities=39% Similarity=0.600 Sum_probs=74.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcc---CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEcc
Q 020783 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (321)
Q Consensus 5 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~---~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a~ 81 (321)
...+|.|-||.+-+|.++|+.+|++||.|-+|.|+. |+.++|||||.|.+..+|++|++.|+|.+|+|+.|.|++|.
T Consensus 12 gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ar 91 (256)
T KOG4207|consen 12 GMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMAR 91 (256)
T ss_pred cceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhh
Confidence 347899999999999999999999999999999954 68899999999999999999999999999999999999988
Q ss_pred CCC
Q 020783 82 GGR 84 (321)
Q Consensus 82 ~~~ 84 (321)
...
T Consensus 92 ygr 94 (256)
T KOG4207|consen 92 YGR 94 (256)
T ss_pred cCC
Confidence 655
No 32
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.81 E-value=4.4e-19 Score=162.89 Aligned_cols=167 Identities=22% Similarity=0.343 Sum_probs=141.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEccC-CCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEcc
Q 020783 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIP-PRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (321)
Q Consensus 3 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~~-~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a~ 81 (321)
.++...|||.||++++|..+|.++|+.||+|.+|++..+ ..++|| ||+|+++++|.+|+..|||..+.|+.|.|....
T Consensus 73 ~rd~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~ 151 (369)
T KOG0123|consen 73 QRDPSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFE 151 (369)
T ss_pred ccCCceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeecc
Confidence 455666999999999999999999999999999999653 238999 999999999999999999999999999999887
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCC---CcEEEEEeCCHH
Q 020783 82 GGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG---GMTGIVDYTSYD 158 (321)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~---~g~afV~f~~~~ 158 (321)
........ ... .....+.++|.+++.+++++.|.++|..+|.|..+.+..+.. .+|+||+|.+.+
T Consensus 152 ~~~er~~~-----------~~~-~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~~~~~gfv~f~~~e 219 (369)
T KOG0123|consen 152 RKEEREAP-----------LGE-YKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIGKSKGFGFVNFENPE 219 (369)
T ss_pred chhhhccc-----------ccc-hhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCCCCCCCccceeecChh
Confidence 65432221 111 233455799999999999999999999999999999998744 469999999999
Q ss_pred HHHHHHHHhCCCcccCccceeEEEEEec
Q 020783 159 DMKYAIRKLDRSEFRNAFSRSYVRVREY 186 (321)
Q Consensus 159 ~a~~A~~~l~g~~~~g~~~~~~i~v~~~ 186 (321)
+|..|++.|++..+.+ ..+-+..+
T Consensus 220 ~a~~av~~l~~~~~~~----~~~~V~~a 243 (369)
T KOG0123|consen 220 DAKKAVETLNGKIFGD----KELYVGRA 243 (369)
T ss_pred HHHHHHHhccCCcCCc----cceeeccc
Confidence 9999999999999987 44555443
No 33
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.80 E-value=3.9e-18 Score=141.39 Aligned_cols=172 Identities=22% Similarity=0.319 Sum_probs=140.5
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHH----HHhccCCeeEEEEccCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEE
Q 020783 1 MSSRSSRTLYVGNLPGDTRMREVED----LFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLR 76 (321)
Q Consensus 1 ~~~~~~~~l~V~nLp~~~te~~L~~----~F~~~G~I~~v~l~~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~ 76 (321)
|+..+..||||.||+..+..++|+. +|++||+|.+|....+.+.+|-|||.|.+.+.|-.|+..|+|..+-|++++
T Consensus 4 ~~~~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mr 83 (221)
T KOG4206|consen 4 MSVNPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMR 83 (221)
T ss_pred cccCCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhh
Confidence 4566777999999999999999888 999999999999999999999999999999999999999999999999999
Q ss_pred EEEccCCCCCCCCCC------------------------CCCCCC-C-CCCC----CCCCCCCcEEEEeCCCCCCCHHHH
Q 020783 77 VELAHGGRRHSSSMD------------------------RYSSYS-S-GGSR----GVSRRSDYRVLVTGLPSSASWQDL 126 (321)
Q Consensus 77 V~~a~~~~~~~~~~~------------------------~~~~~~-~-~~~~----~~~~~~~~~i~V~nl~~~~t~~~l 126 (321)
++||+.....-.... .+..+. . .... .+..+++..+++.|||..++.+.+
T Consensus 84 iqyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l 163 (221)
T KOG4206|consen 84 IQYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEML 163 (221)
T ss_pred eecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHH
Confidence 999986543211100 000000 0 0001 223567789999999999999999
Q ss_pred HHHHHhcCCcEEEEEEEcCCCcEEEEEeCCHHHHHHHHHHhCCCccc
Q 020783 127 KDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFR 173 (321)
Q Consensus 127 ~~~f~~~G~i~~~~i~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 173 (321)
..+|.+|.....+.+..... +.|||+|.+...|..|...+++..+.
T Consensus 164 ~~lf~qf~g~keir~i~~~~-~iAfve~~~d~~a~~a~~~lq~~~it 209 (221)
T KOG4206|consen 164 SDLFEQFPGFKEIRLIPPRS-GIAFVEFLSDRQASAAQQALQGFKIT 209 (221)
T ss_pred HHHHhhCcccceeEeccCCC-ceeEEecchhhhhHHHhhhhccceec
Confidence 99999999998888876543 38999999999999999998887765
No 34
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.78 E-value=3.5e-18 Score=137.26 Aligned_cols=83 Identities=29% Similarity=0.490 Sum_probs=76.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcc---CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEc
Q 020783 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (321)
Q Consensus 4 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~---~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a 80 (321)
..+++|||+|||+++|+++|+++|++||.|.+|.|+. +++++|||||+|.+.++|++|++.||+..|+|+.|+|+++
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 4578999999999999999999999999999999954 6788999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 020783 81 HGGRRH 86 (321)
Q Consensus 81 ~~~~~~ 86 (321)
......
T Consensus 112 ~~~~~~ 117 (144)
T PLN03134 112 NDRPSA 117 (144)
T ss_pred CcCCCC
Confidence 865543
No 35
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.78 E-value=1.4e-18 Score=154.46 Aligned_cols=167 Identities=20% Similarity=0.319 Sum_probs=139.4
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcc---CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEE
Q 020783 1 MSSRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRV 77 (321)
Q Consensus 1 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~---~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V 77 (321)
|+..+.++||||+|++++|++.|++.|.+||+|.++.++. +++++||+||+|++++.+.+++. .....|+|+.|.+
T Consensus 1 ~~~~~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~ 79 (311)
T KOG4205|consen 1 SESGESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEP 79 (311)
T ss_pred CCccCCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccc
Confidence 3455889999999999999999999999999999999954 68899999999999999999988 5567899999999
Q ss_pred EEccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCCC----cEEEEE
Q 020783 78 ELAHGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVD 153 (321)
Q Consensus 78 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~----g~afV~ 153 (321)
+.|.+......... ......|||++||.+++++++++.|.+||.|..+.++.+... +|+||.
T Consensus 80 k~av~r~~~~~~~~--------------~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~ 145 (311)
T KOG4205|consen 80 KRAVSREDQTKVGR--------------HLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVT 145 (311)
T ss_pred eeccCccccccccc--------------ccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeE
Confidence 99887664333111 114558999999999999999999999999999999888543 699999
Q ss_pred eCCHHHHHHHHHHhCCCcccCccceeEEEEEecC
Q 020783 154 YTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYD 187 (321)
Q Consensus 154 f~~~~~a~~A~~~l~g~~~~g~~~~~~i~v~~~~ 187 (321)
|.+.+.+.+++ ...-..+.| ..+.+..+.
T Consensus 146 ~~~e~sVdkv~-~~~f~~~~g----k~vevkrA~ 174 (311)
T KOG4205|consen 146 FDSEDSVDKVT-LQKFHDFNG----KKVEVKRAI 174 (311)
T ss_pred eccccccceec-ccceeeecC----ceeeEeecc
Confidence 99999999988 567777888 455554433
No 36
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.78 E-value=2.5e-18 Score=158.23 Aligned_cols=172 Identities=21% Similarity=0.321 Sum_probs=128.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcc---CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEcc
Q 020783 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (321)
Q Consensus 5 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~---~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a~ 81 (321)
|-..||||||+.++|+++|+.+|+.||.|..|.+.. +|.++|||||+|.+.++|.+|+..|||..|.|+.|+|....
T Consensus 277 p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~ 356 (549)
T KOG0147|consen 277 PMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVT 356 (549)
T ss_pred chhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEee
Confidence 344599999999999999999999999999999943 79999999999999999999999999999999999998766
Q ss_pred CCCCCCCCCC----------CCCCCCCCC-------------C-----------------------------CCCCC---
Q 020783 82 GGRRHSSSMD----------RYSSYSSGG-------------S-----------------------------RGVSR--- 106 (321)
Q Consensus 82 ~~~~~~~~~~----------~~~~~~~~~-------------~-----------------------------~~~~~--- 106 (321)
.......... .+...+.++ . ...+.
T Consensus 357 ~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~ 436 (549)
T KOG0147|consen 357 ERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLLAKLASAAQFNGVVRVRSVDPADAS 436 (549)
T ss_pred eecccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHhccccchHHhhcCCcCccccCccccc
Confidence 4433332100 000000000 0 00000
Q ss_pred ----CCCcEEEEeCCCCC--CC--------HHHHHHHHHhcCCcEEEEEEEcCCCcEEEEEeCCHHHHHHHHHHhCCCcc
Q 020783 107 ----RSDYRVLVTGLPSS--AS--------WQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEF 172 (321)
Q Consensus 107 ----~~~~~i~V~nl~~~--~t--------~~~l~~~f~~~G~i~~~~i~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~ 172 (321)
.+..++.+.|+-.. .| .+++.+.|.+||+|+.|.+..+.. |+.||.|.+.+.|..|+..|||.+|
T Consensus 437 p~~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~ns~-g~VYvrc~s~~~A~~a~~alhgrWF 515 (549)
T KOG0147|consen 437 PAFDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKNSA-GCVYVRCPSAEAAGTAVKALHGRWF 515 (549)
T ss_pred cccCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccCCC-ceEEEecCcHHHHHHHHHHHhhhhh
Confidence 12223444443211 11 468889999999999988877765 7999999999999999999999999
Q ss_pred cCccc
Q 020783 173 RNAFS 177 (321)
Q Consensus 173 ~g~~~ 177 (321)
.|+.+
T Consensus 516 ~gr~I 520 (549)
T KOG0147|consen 516 AGRMI 520 (549)
T ss_pred cccee
Confidence 99543
No 37
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.77 E-value=2.5e-18 Score=145.21 Aligned_cols=138 Identities=22% Similarity=0.350 Sum_probs=115.3
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEccCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEc
Q 020783 1 MSSRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (321)
Q Consensus 1 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a 80 (321)
|++...+|||||||+.++||+-|..||.+.|.|+.++|+.+ .|+|.++
T Consensus 1 ~~~~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~--------------------------------e~~v~wa 48 (321)
T KOG0148|consen 1 NGSDEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD--------------------------------ELKVNWA 48 (321)
T ss_pred CCCCCCceEEeeccChhhHHHHHHHHHHhccccccceeehh--------------------------------hhccccc
Confidence 57788999999999999999999999999999999999743 3556665
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCCC----cEEEEEeCC
Q 020783 81 HGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTS 156 (321)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~----g~afV~f~~ 156 (321)
..+...++ +.......+||+.|...++-++|++.|.+||+|..+++++|.++ ||+||.|.+
T Consensus 49 ~~p~nQsk---------------~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~ 113 (321)
T KOG0148|consen 49 TAPGNQSK---------------PTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPN 113 (321)
T ss_pred cCcccCCC---------------CccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccc
Confidence 54421111 12223558999999999999999999999999999999998654 699999999
Q ss_pred HHHHHHHHHHhCCCcccCccceeEEEEEecCCC
Q 020783 157 YDDMKYAIRKLDRSEFRNAFSRSYVRVREYDSR 189 (321)
Q Consensus 157 ~~~a~~A~~~l~g~~~~g~~~~~~i~v~~~~~~ 189 (321)
.++|+.||..|||..+++ +.|+.....+.
T Consensus 114 k~dAEnAI~~MnGqWlG~----R~IRTNWATRK 142 (321)
T KOG0148|consen 114 KEDAENAIQQMNGQWLGR----RTIRTNWATRK 142 (321)
T ss_pred hHHHHHHHHHhCCeeecc----ceeeccccccC
Confidence 999999999999999999 78887665444
No 38
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.74 E-value=1.5e-18 Score=159.66 Aligned_cols=167 Identities=20% Similarity=0.305 Sum_probs=137.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcc---CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEE
Q 020783 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (321)
Q Consensus 3 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~---~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~ 79 (321)
+++.+|||+--|+-.+++.+|.+||+.+|+|.+|.++. ++.++|.|||+|.+.+++..|+. |.|..+.|.+|.|+.
T Consensus 176 ERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGqrllg~pv~vq~ 254 (549)
T KOG0147|consen 176 ERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQRLLGVPVIVQL 254 (549)
T ss_pred HHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhh-hcCCcccCceeEecc
Confidence 56778999999999999999999999999999999954 57889999999999999999997 999999999999998
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcC----CCcEEEEEeC
Q 020783 80 AHGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDR----GGMTGIVDYT 155 (321)
Q Consensus 80 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~----~~g~afV~f~ 155 (321)
..-.+.... .......+++. ..+...+||+||..++++++|..+|+.||.|..|.+..+. .+||+||+|.
T Consensus 255 sEaeknr~a--~~s~a~~~k~~----~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~ 328 (549)
T KOG0147|consen 255 SEAEKNRAA--NASPALQGKGF----TGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFV 328 (549)
T ss_pred cHHHHHHHH--hcccccccccc----ccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEe
Confidence 654332211 11111111111 1222239999999999999999999999999999999885 3479999999
Q ss_pred CHHHHHHHHHHhCCCcccCcc
Q 020783 156 SYDDMKYAIRKLDRSEFRNAF 176 (321)
Q Consensus 156 ~~~~a~~A~~~l~g~~~~g~~ 176 (321)
+.++|.+|+.+|||-++.|+.
T Consensus 329 ~~~~ar~a~e~lngfelAGr~ 349 (549)
T KOG0147|consen 329 NKEDARKALEQLNGFELAGRL 349 (549)
T ss_pred cHHHHHHHHHHhccceecCce
Confidence 999999999999999999944
No 39
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.74 E-value=6e-17 Score=133.27 Aligned_cols=169 Identities=23% Similarity=0.330 Sum_probs=132.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEccCCCC----CcEEEEEEcCHHHHHHHHHhcCCcccC---CceEEEE
Q 020783 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRP----PGYAFLEFEDYRDAEDAIRGRDGYNFD---GYRLRVE 78 (321)
Q Consensus 6 ~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~~~~~----kg~aFVeF~~~e~A~~A~~~l~g~~i~---g~~i~V~ 78 (321)
-+||||.+||.++...||..||..|--.+...|+.+.+. +.+|||.|.+..+|.+|++.|||..|+ +..|+++
T Consensus 34 VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhiE 113 (284)
T KOG1457|consen 34 VRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHIE 113 (284)
T ss_pred cceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEee
Confidence 589999999999999999999999987888888766544 489999999999999999999999996 7789999
Q ss_pred EccCCCCCCCCCCCCCCCCCC--------------------------------CC-------------------------
Q 020783 79 LAHGGRRHSSSMDRYSSYSSG--------------------------------GS------------------------- 101 (321)
Q Consensus 79 ~a~~~~~~~~~~~~~~~~~~~--------------------------------~~------------------------- 101 (321)
+|+...+.......+...... +.
T Consensus 114 lAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~P~a 193 (284)
T KOG1457|consen 114 LAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKAPSA 193 (284)
T ss_pred ehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcCCcc
Confidence 998664332211100000000 00
Q ss_pred ---------CCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCCCcEEEEEeCCHHHHHHHHHHhCCCcc
Q 020783 102 ---------RGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEF 172 (321)
Q Consensus 102 ---------~~~~~~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~ 172 (321)
.......-.++||.||..++++++|+.+|+.|.....++|....+...||++|++.+.|..|+..|+|..+
T Consensus 194 ~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~g~~vaf~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 194 NAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred cchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCCCcceEeecHHHHHHHHHHHHHhhccee
Confidence 00001123489999999999999999999999998888887665556999999999999999999999877
Q ss_pred cC
Q 020783 173 RN 174 (321)
Q Consensus 173 ~g 174 (321)
..
T Consensus 274 s~ 275 (284)
T KOG1457|consen 274 SS 275 (284)
T ss_pred cc
Confidence 54
No 40
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.74 E-value=5.3e-17 Score=132.11 Aligned_cols=81 Identities=20% Similarity=0.150 Sum_probs=72.4
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCCC----cEEEEEeCCHHHHHHHHHHhCCCcccCccce
Q 020783 103 GVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSR 178 (321)
Q Consensus 103 ~~~~~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~----g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~ 178 (321)
++.....+.|.|-||.+.++.++|..+|++||.|.+|+|..+..+ |||||.|....+|++|++.|+|..++|
T Consensus 7 PPdv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldg---- 82 (256)
T KOG4207|consen 7 PPDVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDG---- 82 (256)
T ss_pred CCCcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeecc----
Confidence 455566789999999999999999999999999999999999654 699999999999999999999999999
Q ss_pred eEEEEEecC
Q 020783 179 SYVRVREYD 187 (321)
Q Consensus 179 ~~i~v~~~~ 187 (321)
+.|+|..++
T Consensus 83 RelrVq~ar 91 (256)
T KOG4207|consen 83 RELRVQMAR 91 (256)
T ss_pred ceeeehhhh
Confidence 777775443
No 41
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=99.73 E-value=1.7e-18 Score=152.83 Aligned_cols=169 Identities=15% Similarity=0.128 Sum_probs=120.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEccC------CCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEE
Q 020783 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIP------PRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLR 76 (321)
Q Consensus 3 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~~------~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~ 76 (321)
+.....|.|.||.+.+|.++|+.||...|+|.++.|..+ +.....|||.|.+...+..|.+ |.++++-|+.|.
T Consensus 4 g~~~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdrali 82 (479)
T KOG4676|consen 4 GSSLGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALI 82 (479)
T ss_pred CCCCceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEE
Confidence 445569999999999999999999999999999999542 3446789999999999999998 555555555555
Q ss_pred EEE-ccCCCCCC--------CC-CCCCCCCCCC----------------CCCCCCCC----------CCcEEEEeCCCCC
Q 020783 77 VEL-AHGGRRHS--------SS-MDRYSSYSSG----------------GSRGVSRR----------SDYRVLVTGLPSS 120 (321)
Q Consensus 77 V~~-a~~~~~~~--------~~-~~~~~~~~~~----------------~~~~~~~~----------~~~~i~V~nl~~~ 120 (321)
|-. ........ .. ..+...+.+- ....|..+ -..+++|++|+..
T Consensus 83 v~p~~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~ 162 (479)
T KOG4676|consen 83 VRPYGDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISA 162 (479)
T ss_pred EEecCCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhh
Confidence 544 33222211 00 0000001000 00111111 1246999999999
Q ss_pred CCHHHHHHHHHhcCCcEEEEEEEcCCCcEEEEEeCCHHHHHHHHHHhCCCccc
Q 020783 121 ASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFR 173 (321)
Q Consensus 121 ~t~~~l~~~f~~~G~i~~~~i~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 173 (321)
+...++.+.|..+|+|.+.++.......+|.|+|........|+ .++|..+.
T Consensus 163 ~~l~e~~e~f~r~Gev~ya~~ask~~s~~c~~sf~~qts~~hal-r~~gre~k 214 (479)
T KOG4676|consen 163 AILPESGESFERKGEVSYAHTASKSRSSSCSHSFRKQTSSKHAL-RSHGRERK 214 (479)
T ss_pred hcchhhhhhhhhcchhhhhhhhccCCCcchhhhHhhhhhHHHHH-Hhcchhhh
Confidence 99999999999999999999988877779999999988888888 45665553
No 42
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.72 E-value=5e-16 Score=135.54 Aligned_cols=181 Identities=19% Similarity=0.245 Sum_probs=140.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCeeE--------EEEc--cCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCce
Q 020783 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVD--------IDLK--IPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYR 74 (321)
Q Consensus 5 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~--------v~l~--~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~ 74 (321)
-++.|||.|||.++|.+++.++|++||-|.. |+|. ..|+.+|-|.|.|-..+++..|+..|++..+.|+.
T Consensus 133 ~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~ 212 (382)
T KOG1548|consen 133 VNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGKK 212 (382)
T ss_pred cCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCcE
Confidence 3567999999999999999999999998865 4552 35889999999999999999999999999999999
Q ss_pred EEEEEccCCCCCCCCCCCC---C-------------CCCCCCC--CCCCCCCCcEEEEeCCCCC----CC-------HHH
Q 020783 75 LRVELAHGGRRHSSSMDRY---S-------------SYSSGGS--RGVSRRSDYRVLVTGLPSS----AS-------WQD 125 (321)
Q Consensus 75 i~V~~a~~~~~~~~~~~~~---~-------------~~~~~~~--~~~~~~~~~~i~V~nl~~~----~t-------~~~ 125 (321)
|+|+.|+-.....-..... . .+.-.+. .+.......+|.+.|+-.. .+ +++
T Consensus 213 ~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlked 292 (382)
T KOG1548|consen 213 LRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDLKED 292 (382)
T ss_pred EEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHHHHH
Confidence 9999987443211110000 0 0000011 1223345678889887442 22 467
Q ss_pred HHHHHHhcCCcEEEEEEEcCCCcEEEEEeCCHHHHHHHHHHhCCCcccCccceeEEEEEecCCC
Q 020783 126 LKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDSR 189 (321)
Q Consensus 126 l~~~f~~~G~i~~~~i~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~i~v~~~~~~ 189 (321)
|.+.+.+||.|..|.+...++.|.+.|.|.+.++|..+++.|+|..|+| +.|.....++.
T Consensus 293 l~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdg----Rql~A~i~DG~ 352 (382)
T KOG1548|consen 293 LTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGRWFDG----RQLTASIWDGK 352 (382)
T ss_pred HHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHhcCeeecc----eEEEEEEeCCc
Confidence 7888999999999999999999999999999999999999999999999 77776665554
No 43
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.71 E-value=2.9e-16 Score=134.50 Aligned_cols=86 Identities=36% Similarity=0.600 Sum_probs=78.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEE---ccCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEE
Q 020783 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDL---KIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (321)
Q Consensus 3 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l---~~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~ 79 (321)
..|=+||||+-|+++++|..|+..|+.||+|+.|.| +.||+++|||||+|+++.+...|++..+|..|+|+.|.|.+
T Consensus 98 gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDv 177 (335)
T KOG0113|consen 98 GDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDV 177 (335)
T ss_pred CCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEe
Confidence 356799999999999999999999999999999999 45899999999999999999999999999999999999999
Q ss_pred ccCCCCCCC
Q 020783 80 AHGGRRHSS 88 (321)
Q Consensus 80 a~~~~~~~~ 88 (321)
........+
T Consensus 178 ERgRTvkgW 186 (335)
T KOG0113|consen 178 ERGRTVKGW 186 (335)
T ss_pred ccccccccc
Confidence 876654433
No 44
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.69 E-value=6e-17 Score=122.05 Aligned_cols=82 Identities=35% Similarity=0.507 Sum_probs=75.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEE---ccCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEE
Q 020783 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDL---KIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (321)
Q Consensus 3 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l---~~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~ 79 (321)
.+.++|||||||+..+||++|.+||+++|+|..|.| ..+..+.|||||+|...++|+.|++.++|+.++.++|.+.|
T Consensus 33 ~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~ 112 (153)
T KOG0121|consen 33 LRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDW 112 (153)
T ss_pred HhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeec
Confidence 367899999999999999999999999999999999 44667899999999999999999999999999999999999
Q ss_pred ccCCC
Q 020783 80 AHGGR 84 (321)
Q Consensus 80 a~~~~ 84 (321)
...-.
T Consensus 113 D~GF~ 117 (153)
T KOG0121|consen 113 DAGFV 117 (153)
T ss_pred cccch
Confidence 76543
No 45
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.68 E-value=9e-17 Score=112.90 Aligned_cols=68 Identities=41% Similarity=0.748 Sum_probs=64.3
Q ss_pred EEEcCCCCCCCHHHHHHHHhccCCeeEEEEcc--CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEE
Q 020783 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLR 76 (321)
Q Consensus 9 l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~--~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~ 76 (321)
|||+|||+++|+++|+++|++||.|..+.+.. ++..++||||+|.+.++|++|++.|||..+.|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 79999999999999999999999999999965 478899999999999999999999999999999885
No 46
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.68 E-value=4.9e-16 Score=139.08 Aligned_cols=80 Identities=28% Similarity=0.385 Sum_probs=71.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcc--CCCCCcEEEEEEcCHHHHHHHHHhcCCccc---CCceEEEEE
Q 020783 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNF---DGYRLRVEL 79 (321)
Q Consensus 5 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~--~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i---~g~~i~V~~ 79 (321)
+++.||||-|++.+||.||+++|++||.|++|.|.. .+.++|||||.|.+.|.|..|++.|||..- ...+|.|+|
T Consensus 123 ~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkF 202 (510)
T KOG0144|consen 123 EERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKF 202 (510)
T ss_pred cchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEe
Confidence 368899999999999999999999999999999966 578999999999999999999999999544 356899999
Q ss_pred ccCCC
Q 020783 80 AHGGR 84 (321)
Q Consensus 80 a~~~~ 84 (321)
|...+
T Consensus 203 ADtqk 207 (510)
T KOG0144|consen 203 ADTQK 207 (510)
T ss_pred cccCC
Confidence 98654
No 47
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.67 E-value=2.1e-15 Score=137.32 Aligned_cols=165 Identities=23% Similarity=0.298 Sum_probs=128.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcc-CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEccCC
Q 020783 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI-PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (321)
Q Consensus 5 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~-~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a~~~ 83 (321)
...-|.+.+|||++|++||.+||+.++ |+++.+.. +|+..|-|||||.++|++++|++ .|...+.-+.|.|.-+...
T Consensus 9 ~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~~~~~ 86 (510)
T KOG4211|consen 9 TAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRRNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFTAGGA 86 (510)
T ss_pred cceEEEecCCCccccHHHHHHHHhcCc-eeEEEEeccCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEccCCc
Confidence 456788999999999999999999995 88888865 49999999999999999999999 8889999999999887654
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEE-EEEEEc---CCCcEEEEEeCCHHH
Q 020783 84 RRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCF-SQVFRD---RGGMTGIVDYTSYDD 159 (321)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~-~~i~~~---~~~g~afV~f~~~~~ 159 (321)
... +..+. . .+........|.+.+||..++++||.++|+-.-.+.. +.+..+ +.++-|||+|++++.
T Consensus 87 e~d-~~~~~-~-------g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ 157 (510)
T KOG4211|consen 87 EAD-WVMRP-G-------GPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQES 157 (510)
T ss_pred ccc-ccccC-C-------CCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHH
Confidence 431 10000 0 0011135568999999999999999999997665555 334444 345799999999999
Q ss_pred HHHHHHHhCCCcccCccceeEEEEEe
Q 020783 160 MKYAIRKLDRSEFRNAFSRSYVRVRE 185 (321)
Q Consensus 160 a~~A~~~l~g~~~~g~~~~~~i~v~~ 185 (321)
|+.|+. -|...+.- ++|.|..
T Consensus 158 ae~Al~-rhre~iGh----RYIEvF~ 178 (510)
T KOG4211|consen 158 AEIALG-RHRENIGH----RYIEVFR 178 (510)
T ss_pred HHHHHH-HHHHhhcc----ceEEeeh
Confidence 999994 46666655 8888754
No 48
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.66 E-value=6.7e-16 Score=132.68 Aligned_cols=78 Identities=21% Similarity=0.295 Sum_probs=73.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEccCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEccCCC
Q 020783 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGR 84 (321)
Q Consensus 6 ~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a~~~~ 84 (321)
.++|||+|||+.+|+++|+++|+.||+|.+|.|..++..+|||||+|.++++|+.|+. |||..|.|+.|.|.++....
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~~~ 81 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAEDYQ 81 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccCCC
Confidence 6899999999999999999999999999999998777778999999999999999996 99999999999999987554
No 49
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.65 E-value=7.6e-16 Score=148.06 Aligned_cols=128 Identities=22% Similarity=0.268 Sum_probs=100.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcc--CCeeEEEEccCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEccC
Q 020783 5 SSRTLYVGNLPGDTRMREVEDLFYKY--GPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (321)
Q Consensus 5 ~~~~l~V~nLp~~~te~~L~~~F~~~--G~I~~v~l~~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a~~ 82 (321)
..++|||+||++++|+++|+++|++| |+|+.|.+. ++||||+|.+.++|++|++.|||..|+|+.|.|.++++
T Consensus 232 ~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~-----rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp 306 (578)
T TIGR01648 232 KVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI-----RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAKP 306 (578)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee-----cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEccC
Confidence 35789999999999999999999999 999999886 67999999999999999999999999999999999987
Q ss_pred CCCCCCCC-CCCCCCC-------CCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCcE
Q 020783 83 GRRHSSSM-DRYSSYS-------SGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVC 137 (321)
Q Consensus 83 ~~~~~~~~-~~~~~~~-------~~~~~~~~~~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~ 137 (321)
........ .+..... .........+...+++++|++.+++++.+.++|..+|.+.
T Consensus 307 ~~~~~~~~~~rg~gg~~~~~~~~~~~~g~~~sp~s~~~~~g~~~~~~~~~~~~~~f~~~g~~~ 369 (578)
T TIGR01648 307 VDKKSYVRYTRGTGGRGKERQAARQSLGQVYDPASRSLAYEDYYYHPPYAPSLHFPRMPGPIR 369 (578)
T ss_pred CCcccccccccccCCCcccccccccccCcccCccccccccccccccccccchhhccccCcccc
Confidence 54321100 0000000 0011112234567899999999999999999999888653
No 50
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.64 E-value=1.7e-14 Score=129.40 Aligned_cols=170 Identities=24% Similarity=0.348 Sum_probs=132.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHH-hccCCeeEEEEcc--CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEcc
Q 020783 5 SSRTLYVGNLPGDTRMREVEDLF-YKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (321)
Q Consensus 5 ~~~~l~V~nLp~~~te~~L~~~F-~~~G~I~~v~l~~--~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a~ 81 (321)
-.+.+||+|||+++.+.+|++|| ++.|+|+.|.|.. .++++|+|.|||+++|.+++|++.||...+.|+.|.|+-..
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~ 122 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDH 122 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccC
Confidence 34669999999999999999999 4779999999965 58999999999999999999999999999999999999766
Q ss_pred CCCCCCCC-------------------C----------------------CCC------CCCCCC---------------
Q 020783 82 GGRRHSSS-------------------M----------------------DRY------SSYSSG--------------- 99 (321)
Q Consensus 82 ~~~~~~~~-------------------~----------------------~~~------~~~~~~--------------- 99 (321)
......-. + ++. ..+.+.
T Consensus 123 d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~~ 202 (608)
T KOG4212|consen 123 DEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSAS 202 (608)
T ss_pred chhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchhh
Confidence 42110000 0 000 000000
Q ss_pred ---CCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCC---CcEEEEEeCCHHHHHHHHHHhCCCccc
Q 020783 100 ---GSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG---GMTGIVDYTSYDDMKYAIRKLDRSEFR 173 (321)
Q Consensus 100 ---~~~~~~~~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~---~g~afV~f~~~~~a~~A~~~l~g~~~~ 173 (321)
....-..+-..++||.||...+....|.+.|.-.|+|..+.+-.++. +++|.++|.++-+|-.|+..+++.-+.
T Consensus 203 Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~vi~y~hpveavqaIsml~~~g~~ 282 (608)
T KOG4212|consen 203 FLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAVIEYDHPVEAVQAISMLDRQGLF 282 (608)
T ss_pred hhhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccccccCCeeEEEecchHHHHHHHHhhccCCCc
Confidence 00111233445899999999999999999999999999998877754 369999999999999999999875444
Q ss_pred C
Q 020783 174 N 174 (321)
Q Consensus 174 g 174 (321)
.
T Consensus 283 ~ 283 (608)
T KOG4212|consen 283 D 283 (608)
T ss_pred c
Confidence 4
No 51
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.63 E-value=4.8e-15 Score=125.18 Aligned_cols=179 Identities=20% Similarity=0.312 Sum_probs=137.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcc--CCCCCcEEEEEEcCHHHHHHHHHhcCCcc-cCC--ceEEEEE
Q 020783 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYN-FDG--YRLRVEL 79 (321)
Q Consensus 5 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~--~~~~kg~aFVeF~~~e~A~~A~~~l~g~~-i~g--~~i~V~~ 79 (321)
+.++||||-|...-.|||++.+|..||.|.+|.+.. +|.+||+|||.|.+..+|..||..|+|.. +.| -.|.|++
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~ 97 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVKF 97 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEEe
Confidence 578999999999999999999999999999999964 67899999999999999999999999944 334 4699999
Q ss_pred ccCCCCCCC-----------------------------------------------C-----------------------
Q 020783 80 AHGGRRHSS-----------------------------------------------S----------------------- 89 (321)
Q Consensus 80 a~~~~~~~~-----------------------------------------------~----------------------- 89 (321)
+...+...- .
T Consensus 98 ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl~A~ 177 (371)
T KOG0146|consen 98 ADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGLAAA 177 (371)
T ss_pred ccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhcccccC
Confidence 874431000 0
Q ss_pred -----CCCC-------------------CCCCCC-----CC---------------------------------------
Q 020783 90 -----MDRY-------------------SSYSSG-----GS--------------------------------------- 101 (321)
Q Consensus 90 -----~~~~-------------------~~~~~~-----~~--------------------------------------- 101 (321)
.... ..+..- +.
T Consensus 178 Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y~Aay 257 (371)
T KOG0146|consen 178 PVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQYAAAY 257 (371)
T ss_pred CcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHHhhhc
Confidence 0000 000000 00
Q ss_pred ------------CC--------CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCCC----cEEEEEeCCH
Q 020783 102 ------------RG--------VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSY 157 (321)
Q Consensus 102 ------------~~--------~~~~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~----g~afV~f~~~ 157 (321)
.. ..-+.++.|||-.||.+..+.+|...|-.||.|+..+++.|+-+ .|+||.|+++
T Consensus 258 paays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp 337 (371)
T KOG0146|consen 258 PAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNP 337 (371)
T ss_pred chhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCc
Confidence 00 00125779999999999999999999999999999999887543 4999999999
Q ss_pred HHHHHHHHHhCCCcccCccceeEEEEEecC
Q 020783 158 DDMKYAIRKLDRSEFRNAFSRSYVRVREYD 187 (321)
Q Consensus 158 ~~a~~A~~~l~g~~~~g~~~~~~i~v~~~~ 187 (321)
.+|+.||..|||..++= .++.|...+
T Consensus 338 ~SaQaAIqAMNGFQIGM----KRLKVQLKR 363 (371)
T KOG0146|consen 338 ASAQAAIQAMNGFQIGM----KRLKVQLKR 363 (371)
T ss_pred hhHHHHHHHhcchhhhh----hhhhhhhcC
Confidence 99999999999999976 455554443
No 52
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.62 E-value=6.6e-15 Score=139.33 Aligned_cols=170 Identities=21% Similarity=0.270 Sum_probs=133.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEccCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEccCC
Q 020783 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (321)
Q Consensus 4 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a~~~ 83 (321)
+..+.|+|+|||..+..++|...|..||.|..+.|+..| --|+|+|.++.+|.+|+..|....+...++.+.|+...
T Consensus 383 rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp~~G---~~aiv~fl~p~eAr~Afrklaysr~k~~plyle~aP~d 459 (725)
T KOG0110|consen 383 RSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLPPGG---TGAIVEFLNPLEARKAFRKLAYSRFKSAPLYLEWAPED 459 (725)
T ss_pred hhcceeeeccCccccccHHHHHHhhcccccceeecCccc---ceeeeeecCccchHHHHHHhchhhhccCccccccChhh
Confidence 567899999999999999999999999999999666322 24899999999999999999999999999999987654
Q ss_pred CCCCC--CCC----CCCC-----------CCCC--CCCC-----------CCCCCCcEEEEeCCCCCCCHHHHHHHHHhc
Q 020783 84 RRHSS--SMD----RYSS-----------YSSG--GSRG-----------VSRRSDYRVLVTGLPSSASWQDLKDHMRRA 133 (321)
Q Consensus 84 ~~~~~--~~~----~~~~-----------~~~~--~~~~-----------~~~~~~~~i~V~nl~~~~t~~~l~~~f~~~ 133 (321)
....+ ... .... ..+. .... ......+.+||.||+.+++.++|..+|.++
T Consensus 460 vf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~F~k~ 539 (725)
T KOG0110|consen 460 VFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLEDLFSKQ 539 (725)
T ss_pred hccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHHHHHhc
Confidence 43311 000 0000 0000 0000 001123349999999999999999999999
Q ss_pred CCcEEEEEEEcCCC-------cEEEEEeCCHHHHHHHHHHhCCCcccCcc
Q 020783 134 GDVCFSQVFRDRGG-------MTGIVDYTSYDDMKYAIRKLDRSEFRNAF 176 (321)
Q Consensus 134 G~i~~~~i~~~~~~-------g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 176 (321)
|.|..+.|...+.+ |||||+|.+.++|+.|++.|+|+.++|+.
T Consensus 540 G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~ 589 (725)
T KOG0110|consen 540 GTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHK 589 (725)
T ss_pred CeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCce
Confidence 99999988876544 89999999999999999999999999955
No 53
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.60 E-value=8e-15 Score=124.08 Aligned_cols=79 Identities=20% Similarity=0.205 Sum_probs=73.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEccCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEccCCC
Q 020783 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGR 84 (321)
Q Consensus 5 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a~~~~ 84 (321)
...+|||+||++.+|+++|++||+.||+|.+|.|..++..++||||+|+++++|+.|+. |||..|.++.|.|..+....
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~~y~ 82 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWGQYE 82 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCcccc
Confidence 45899999999999999999999999999999998888888999999999999999997 99999999999999876543
No 54
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.60 E-value=4e-15 Score=124.33 Aligned_cols=80 Identities=38% Similarity=0.602 Sum_probs=76.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEE---ccCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEc
Q 020783 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDL---KIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (321)
Q Consensus 4 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l---~~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a 80 (321)
.++++|-|.||+.+++|++|++||.+||.|..|.| +.||.++|||||.|.+.++|++|+..|||.-++.-.|.|+|+
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 47889999999999999999999999999999999 568999999999999999999999999999999999999999
Q ss_pred cCC
Q 020783 81 HGG 83 (321)
Q Consensus 81 ~~~ 83 (321)
++.
T Consensus 267 kP~ 269 (270)
T KOG0122|consen 267 KPS 269 (270)
T ss_pred CCC
Confidence 864
No 55
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.60 E-value=3.2e-15 Score=108.62 Aligned_cols=80 Identities=36% Similarity=0.468 Sum_probs=74.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEccCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEccCCC
Q 020783 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGR 84 (321)
Q Consensus 5 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a~~~~ 84 (321)
-++.|||.|||+.+|.+++.++|.+||.|..|.+=.+...+|.|||.|++..+|++|+.+|+|..+.++.|.|-+....+
T Consensus 17 vnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~~~ 96 (124)
T KOG0114|consen 17 VNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQPED 96 (124)
T ss_pred hheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCHHH
Confidence 45789999999999999999999999999999997777779999999999999999999999999999999999976544
No 56
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.60 E-value=2.1e-14 Score=127.30 Aligned_cols=142 Identities=28% Similarity=0.471 Sum_probs=110.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcc---CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEccC
Q 020783 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (321)
Q Consensus 6 ~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~---~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a~~ 82 (321)
.++|||+|||+++|+++|.++|.+||.|..+.+.. ++.++|||||+|.+.++|..|+..|+|..|.|+.|.|.++..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 58999999999999999999999999999999844 579999999999999999999999999999999999999764
Q ss_pred -CCCCCCCCCC-CCC--CCCCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCCC
Q 020783 83 -GRRHSSSMDR-YSS--YSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG 147 (321)
Q Consensus 83 -~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~ 147 (321)
.......... ... ................+++.+++..++..++...|..+|.+....+......
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (306)
T COG0724 195 ASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDG 263 (306)
T ss_pred ccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeeccCCCCC
Confidence 1111110000 000 0001112233455678999999999999999999999999977766655443
No 57
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.60 E-value=5.4e-14 Score=123.62 Aligned_cols=77 Identities=23% Similarity=0.454 Sum_probs=71.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcc---CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEccCC
Q 020783 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (321)
Q Consensus 7 ~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~---~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a~~~ 83 (321)
++|||..++++.+|+||+..|+.||+|..|.+.. .+.++|||||||.+..+-..|+..||-..++|+.|+|..+..+
T Consensus 211 nRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~vTP 290 (544)
T KOG0124|consen 211 NRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTP 290 (544)
T ss_pred heEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecccccCC
Confidence 6899999999999999999999999999999943 4567999999999999999999999999999999999977644
No 58
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.60 E-value=6.9e-14 Score=124.64 Aligned_cols=176 Identities=18% Similarity=0.211 Sum_probs=141.0
Q ss_pred CCeEEEcCCCCC-CCHHHHHHHHhccCCeeEEEEccCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEccCCC
Q 020783 6 SRTLYVGNLPGD-TRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGR 84 (321)
Q Consensus 6 ~~~l~V~nLp~~-~te~~L~~~F~~~G~I~~v~l~~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a~~~~ 84 (321)
+..|.|.||... +|.+-|..+|.-||.|..|+|..++ +-.|.|+|.+..+|+.|+.+|+|..+.|+.|+|.+++...
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nk--kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~ 374 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNK--KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTN 374 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecC--CcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCcc
Confidence 688999999665 9999999999999999999997654 4789999999999999999999999999999999999877
Q ss_pred CCCCCCCCC-----CCCCCCCC----------CCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCCCcE
Q 020783 85 RHSSSMDRY-----SSYSSGGS----------RGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMT 149 (321)
Q Consensus 85 ~~~~~~~~~-----~~~~~~~~----------~~~~~~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~ 149 (321)
-..+.+... ..+..... ..-.-++..++++.|+|..++++++++.|...|-.........+...+
T Consensus 375 vqlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff~kd~km 454 (492)
T KOG1190|consen 375 VQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQKDRKM 454 (492)
T ss_pred ccCCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeecCCCcce
Confidence 655442111 11111110 001124567899999999999999999999999888877776666669
Q ss_pred EEEEeCCHHHHHHHHHHhCCCcccCccceeEEEEEec
Q 020783 150 GIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREY 186 (321)
Q Consensus 150 afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~i~v~~~ 186 (321)
|.+++++.++|..|+-.++...+++. -.++|...
T Consensus 455 al~q~~sveeA~~ali~~hnh~lgen---~hlRvSFS 488 (492)
T KOG1190|consen 455 ALPQLESVEEAIQALIDLHNHYLGEN---HHLRVSFS 488 (492)
T ss_pred eecccCChhHhhhhccccccccCCCC---ceEEEEee
Confidence 99999999999999999999988773 24555543
No 59
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.58 E-value=5.2e-15 Score=104.15 Aligned_cols=68 Identities=32% Similarity=0.664 Sum_probs=61.3
Q ss_pred EEEcCCCCCCCHHHHHHHHhccCCeeEEEEccC--CCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEE
Q 020783 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIP--PRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLR 76 (321)
Q Consensus 9 l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~~--~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~ 76 (321)
|||+|||+++|+++|.++|+.||.|..+.+... +.++++|||+|.++++|.+|++.++|..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 799999999999999999999999999999543 56789999999999999999999999999999874
No 60
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.56 E-value=1.6e-14 Score=132.09 Aligned_cols=81 Identities=31% Similarity=0.495 Sum_probs=73.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcc---CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCC--ceEEEEE
Q 020783 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDG--YRLRVEL 79 (321)
Q Consensus 5 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~---~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g--~~i~V~~ 79 (321)
..++|||+|||+++|+++|+++|++||+|+.+.|+. ++++++||||+|.+.++|++|++.||+..+.+ +.|.|.+
T Consensus 192 ~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~ 271 (346)
T TIGR01659 192 KDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRL 271 (346)
T ss_pred ccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 467899999999999999999999999999999853 67889999999999999999999999999876 6899999
Q ss_pred ccCCCC
Q 020783 80 AHGGRR 85 (321)
Q Consensus 80 a~~~~~ 85 (321)
+.....
T Consensus 272 a~~~~~ 277 (346)
T TIGR01659 272 AEEHGK 277 (346)
T ss_pred CCcccc
Confidence 886544
No 61
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.54 E-value=3.6e-14 Score=118.24 Aligned_cols=75 Identities=27% Similarity=0.430 Sum_probs=68.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEc---cCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEccC
Q 020783 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLK---IPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (321)
Q Consensus 7 ~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~---~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a~~ 82 (321)
++||||||+|+++.+.|+.+|++||+|.+..|+ .++++||||||+|.+.++|.+|.+ -.+-.|+|++-.|.+|.-
T Consensus 13 TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~-dp~piIdGR~aNcnlA~l 90 (247)
T KOG0149|consen 13 TKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACK-DPNPIIDGRKANCNLASL 90 (247)
T ss_pred EEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhc-CCCCcccccccccchhhh
Confidence 689999999999999999999999999999884 478999999999999999999999 445678999999999876
No 62
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.54 E-value=3.8e-14 Score=132.25 Aligned_cols=172 Identities=21% Similarity=0.290 Sum_probs=127.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcc---CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEcc
Q 020783 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (321)
Q Consensus 5 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~---~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a~ 81 (321)
..+.+||+|||..++++++.++...||.++...+.. ++.++||||.+|-++.....|+..|||+.++++.|.|+.|.
T Consensus 288 ~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~ 367 (500)
T KOG0120|consen 288 SPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAI 367 (500)
T ss_pred ccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhh
Confidence 457899999999999999999999999999998843 57899999999999999999999999999999999999988
Q ss_pred CCCCCCCCCCC--CCCCCCCCCC--CCCCCCCcEEEEeCCCC--CC-C-------HHHHHHHHHhcCCcEEEEEEEc-C-
Q 020783 82 GGRRHSSSMDR--YSSYSSGGSR--GVSRRSDYRVLVTGLPS--SA-S-------WQDLKDHMRRAGDVCFSQVFRD-R- 145 (321)
Q Consensus 82 ~~~~~~~~~~~--~~~~~~~~~~--~~~~~~~~~i~V~nl~~--~~-t-------~~~l~~~f~~~G~i~~~~i~~~-~- 145 (321)
........+.. .....+-... .....+...+.+.|+-. +. . .++++..|.+||.|..|.+... .
T Consensus 368 ~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~ 447 (500)
T KOG0120|consen 368 VGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPD 447 (500)
T ss_pred ccchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCCC
Confidence 76654433222 0001110000 11111122233333211 11 1 2355667789999999999877 2
Q ss_pred -----CCcEEEEEeCCHHHHHHHHHHhCCCcccCcc
Q 020783 146 -----GGMTGIVDYTSYDDMKYAIRKLDRSEFRNAF 176 (321)
Q Consensus 146 -----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 176 (321)
+.|..||+|.+.+++++|+..|+|.+|.|+.
T Consensus 448 ~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRt 483 (500)
T KOG0120|consen 448 ENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRT 483 (500)
T ss_pred CCcCCCcccEEEEecChHHHHHHHHHccCceeCCcE
Confidence 2369999999999999999999999999943
No 63
>smart00362 RRM_2 RNA recognition motif.
Probab=99.53 E-value=6.7e-14 Score=97.88 Aligned_cols=71 Identities=44% Similarity=0.778 Sum_probs=65.4
Q ss_pred eEEEcCCCCCCCHHHHHHHHhccCCeeEEEEccC-CCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEE
Q 020783 8 TLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIP-PRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVE 78 (321)
Q Consensus 8 ~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~~-~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~ 78 (321)
+|||+|||+++++++|.++|.+||.|..+.+..+ +.++++|||+|.+.++|++|+..++|..+.|+.|.|.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 5899999999999999999999999999998654 5678999999999999999999999999999998873
No 64
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=6.7e-15 Score=128.78 Aligned_cols=82 Identities=26% Similarity=0.415 Sum_probs=76.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEE---ccCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEc
Q 020783 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDL---KIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (321)
Q Consensus 4 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l---~~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a 80 (321)
-|.+.|||..|.|-+|+++|..+|+.||+|..|.+ ..||.+-.||||||++.++|++|+-.|++..|+++.|+|.|+
T Consensus 237 PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFS 316 (479)
T KOG0415|consen 237 PPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFS 316 (479)
T ss_pred CCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehh
Confidence 47899999999999999999999999999999999 457899999999999999999999999999999999999998
Q ss_pred cCCCC
Q 020783 81 HGGRR 85 (321)
Q Consensus 81 ~~~~~ 85 (321)
.....
T Consensus 317 QSVsk 321 (479)
T KOG0415|consen 317 QSVSK 321 (479)
T ss_pred hhhhh
Confidence 76554
No 65
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.52 E-value=2.6e-14 Score=124.12 Aligned_cols=82 Identities=23% Similarity=0.436 Sum_probs=75.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEccC-CCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEccCC
Q 020783 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIP-PRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (321)
Q Consensus 5 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~~-~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a~~~ 83 (321)
-.++|+|.|||+...|-||+..|++||+|.+|.|+.+ .-+||||||+|++.++|++|-+.|||..|.|++|.|..|...
T Consensus 95 ~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ATar 174 (376)
T KOG0125|consen 95 TPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNATAR 174 (376)
T ss_pred CCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccchh
Confidence 4589999999999999999999999999999999765 467999999999999999999999999999999999998765
Q ss_pred CCC
Q 020783 84 RRH 86 (321)
Q Consensus 84 ~~~ 86 (321)
...
T Consensus 175 V~n 177 (376)
T KOG0125|consen 175 VHN 177 (376)
T ss_pred hcc
Confidence 433
No 66
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.52 E-value=1.7e-15 Score=121.05 Aligned_cols=82 Identities=32% Similarity=0.554 Sum_probs=75.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEE---ccCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEc
Q 020783 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDL---KIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (321)
Q Consensus 4 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l---~~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a 80 (321)
.++--|||||||+++||.||.-.|++||+|.+|.| +.||+++||||+.|++..+...|+..|||..|.|+.|+|...
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 35667999999999999999999999999999999 458999999999999999999999999999999999999987
Q ss_pred cCCCC
Q 020783 81 HGGRR 85 (321)
Q Consensus 81 ~~~~~ 85 (321)
.....
T Consensus 113 ~~Yk~ 117 (219)
T KOG0126|consen 113 SNYKK 117 (219)
T ss_pred ccccC
Confidence 65543
No 67
>PLN03213 repressor of silencing 3; Provisional
Probab=99.50 E-value=8.7e-14 Score=126.68 Aligned_cols=77 Identities=19% Similarity=0.334 Sum_probs=71.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcc-CCCCCcEEEEEEcCH--HHHHHHHHhcCCcccCCceEEEEEc
Q 020783 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI-PPRPPGYAFLEFEDY--RDAEDAIRGRDGYNFDGYRLRVELA 80 (321)
Q Consensus 4 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~-~~~~kg~aFVeF~~~--e~A~~A~~~l~g~~i~g~~i~V~~a 80 (321)
...-+||||||++.+|+++|..+|..||.|..|.|+. +| +|||||+|... .++.+|+..|||..+.|+.|+|..|
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKA 85 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKA 85 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeec
Confidence 4567899999999999999999999999999999974 34 99999999987 7899999999999999999999998
Q ss_pred cC
Q 020783 81 HG 82 (321)
Q Consensus 81 ~~ 82 (321)
++
T Consensus 86 KP 87 (759)
T PLN03213 86 KE 87 (759)
T ss_pred cH
Confidence 73
No 68
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.50 E-value=4.7e-14 Score=107.41 Aligned_cols=78 Identities=24% Similarity=0.462 Sum_probs=72.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcc---CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEccCC
Q 020783 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (321)
Q Consensus 7 ~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~---~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a~~~ 83 (321)
-.|||++++..+||++|.+.|..||+|++|.|.. ||-.+|||+|+|++.++|++|+..|||..|.|+.|.|.|+-..
T Consensus 73 wIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~Fv~ 152 (170)
T KOG0130|consen 73 WIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCFVK 152 (170)
T ss_pred EEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEEec
Confidence 4699999999999999999999999999999954 6888999999999999999999999999999999999998755
Q ss_pred C
Q 020783 84 R 84 (321)
Q Consensus 84 ~ 84 (321)
.
T Consensus 153 g 153 (170)
T KOG0130|consen 153 G 153 (170)
T ss_pred C
Confidence 4
No 69
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.48 E-value=1.6e-12 Score=104.40 Aligned_cols=80 Identities=25% Similarity=0.365 Sum_probs=71.5
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCC----CcEEEEEeCCHHHHHHHHHHhCCCcccCccceeEE
Q 020783 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 181 (321)
Q Consensus 106 ~~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~i 181 (321)
....++|||+|||.++++++|+++|.+||.|..+.+..+.. .+||||+|.+.++|+.|++.||+..+.| +.|
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~G----r~l 106 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNG----RHI 106 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECC----EEE
Confidence 44567899999999999999999999999999999998753 4799999999999999999999999999 778
Q ss_pred EEEecCCC
Q 020783 182 RVREYDSR 189 (321)
Q Consensus 182 ~v~~~~~~ 189 (321)
.|.....+
T Consensus 107 ~V~~a~~~ 114 (144)
T PLN03134 107 RVNPANDR 114 (144)
T ss_pred EEEeCCcC
Confidence 88776544
No 70
>smart00360 RRM RNA recognition motif.
Probab=99.44 E-value=5.4e-13 Score=92.83 Aligned_cols=68 Identities=41% Similarity=0.710 Sum_probs=62.6
Q ss_pred EcCCCCCCCHHHHHHHHhccCCeeEEEEcc---CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEE
Q 020783 11 VGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVE 78 (321)
Q Consensus 11 V~nLp~~~te~~L~~~F~~~G~I~~v~l~~---~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~ 78 (321)
|+|||..+++++|+++|++||.|..+.+.. ++.+++||||+|.+.++|..|+..|++..+.|+.|.|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 689999999999999999999999999954 46778999999999999999999999999999998873
No 71
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.44 E-value=8.6e-13 Score=92.69 Aligned_cols=72 Identities=40% Similarity=0.739 Sum_probs=66.1
Q ss_pred eEEEcCCCCCCCHHHHHHHHhccCCeeEEEEccCC--CCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEE
Q 020783 8 TLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPP--RPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (321)
Q Consensus 8 ~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~~~--~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~ 79 (321)
+|+|+|||+.+++++|.++|..||.|..+.+.... .++++|||+|.+.++|..|+..+++..+.|+.|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 58999999999999999999999999999996543 5689999999999999999999999999999998864
No 72
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=2.1e-13 Score=112.29 Aligned_cols=84 Identities=31% Similarity=0.551 Sum_probs=77.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcc---CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEc
Q 020783 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (321)
Q Consensus 4 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~---~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a 80 (321)
...++||||+|..++||.-|...|-.||.|.+|.++. +++.+|||||+|...|+|.+|+..||+..+.|+.|.|.+|
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 4568999999999999999999999999999999964 5788999999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 020783 81 HGGRRHS 87 (321)
Q Consensus 81 ~~~~~~~ 87 (321)
++.+...
T Consensus 88 kP~kike 94 (298)
T KOG0111|consen 88 KPEKIKE 94 (298)
T ss_pred CCccccC
Confidence 9876443
No 73
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.41 E-value=1.5e-12 Score=104.55 Aligned_cols=79 Identities=19% Similarity=0.248 Sum_probs=72.9
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCC-CcEEEEEeCCHHHHHHHHHHhCCCcccCccceeEEEEEec
Q 020783 108 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG-GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREY 186 (321)
Q Consensus 108 ~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~-~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~i~v~~~ 186 (321)
...+|||+|||.++.+.+|+++|.+||.|..|.+...+. ..||||+|+++.+|+.|+..-+|..++| ..++|+..
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg----~rLRVEfp 80 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDG----CRLRVEFP 80 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCc----ceEEEEec
Confidence 456899999999999999999999999999999987665 4699999999999999999999999999 99999998
Q ss_pred CCCC
Q 020783 187 DSRR 190 (321)
Q Consensus 187 ~~~r 190 (321)
+..+
T Consensus 81 rggr 84 (241)
T KOG0105|consen 81 RGGR 84 (241)
T ss_pred cCCC
Confidence 8775
No 74
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.40 E-value=1.2e-12 Score=87.72 Aligned_cols=56 Identities=36% Similarity=0.622 Sum_probs=51.0
Q ss_pred HHHHHhccCCeeEEEEccCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEc
Q 020783 23 VEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (321)
Q Consensus 23 L~~~F~~~G~I~~v~l~~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a 80 (321)
|.++|++||+|..+.+..+. +++|||+|.+.++|+.|++.|||..+.|++|+|.||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~--~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK--RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS--TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC--CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68999999999999997544 699999999999999999999999999999999985
No 75
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.39 E-value=1.7e-11 Score=105.49 Aligned_cols=77 Identities=18% Similarity=0.216 Sum_probs=68.9
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcC----CCcEEEEEeCCHHHHHHHHHHhCCCcccCccceeEEE
Q 020783 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDR----GGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 182 (321)
Q Consensus 107 ~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~i~ 182 (321)
.+-.||||.-|++++++..|+..|.+||+|..|.|+.+. ..|||||+|++..++..|.+..+|..++| ..|-
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idg----rri~ 174 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDG----RRIL 174 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecC----cEEE
Confidence 455699999999999999999999999999999999884 34799999999999999999999999999 6666
Q ss_pred EEecC
Q 020783 183 VREYD 187 (321)
Q Consensus 183 v~~~~ 187 (321)
|+...
T Consensus 175 VDvER 179 (335)
T KOG0113|consen 175 VDVER 179 (335)
T ss_pred EEecc
Confidence 65544
No 76
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.39 E-value=1.1e-12 Score=121.87 Aligned_cols=79 Identities=33% Similarity=0.636 Sum_probs=74.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEc---cCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEccCC
Q 020783 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLK---IPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (321)
Q Consensus 7 ~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~---~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a~~~ 83 (321)
+.|||||||+++++++|.++|+..|.|.++++. .+|+++||||++|.++++|..|++.|||..+.|++|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 899999999999999999999999999999994 47899999999999999999999999999999999999998765
Q ss_pred CC
Q 020783 84 RR 85 (321)
Q Consensus 84 ~~ 85 (321)
+.
T Consensus 99 ~~ 100 (435)
T KOG0108|consen 99 KN 100 (435)
T ss_pred ch
Confidence 43
No 77
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.39 E-value=3e-12 Score=89.61 Aligned_cols=63 Identities=21% Similarity=0.389 Sum_probs=58.9
Q ss_pred EEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCC---CcEEEEEeCCHHHHHHHHHHhCCCcccC
Q 020783 112 VLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG---GMTGIVDYTSYDDMKYAIRKLDRSEFRN 174 (321)
Q Consensus 112 i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~---~g~afV~f~~~~~a~~A~~~l~g~~~~g 174 (321)
|||+|||.++++++|.++|.+||.|..+.+..+.. .++|||+|.+.++|+.|++.|+|..+.|
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~ 66 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKING 66 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECc
Confidence 79999999999999999999999999999998622 3699999999999999999999999999
No 78
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.38 E-value=2.5e-12 Score=114.82 Aligned_cols=178 Identities=17% Similarity=0.197 Sum_probs=132.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEccCCCCCcEEEEEEcCHHHHHHHHHhcCC--cccCCceEEEEEc
Q 020783 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDG--YNFDGYRLRVELA 80 (321)
Q Consensus 3 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~~~~~kg~aFVeF~~~e~A~~A~~~l~g--~~i~g~~i~V~~a 80 (321)
..+++.|.++|||++++|+||.+++..||+|..+.+.. .+.-|||||.++++|...+..... -.+.|+.|.|+|+
T Consensus 25 ~~pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lk---GknQAflem~d~~sAvtmv~~y~~~~p~lr~~~~yiq~s 101 (492)
T KOG1190|consen 25 AEPSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLK---GKNQAFLEMADEESAVTMVNYYTSVTPVLRGQPIYIQYS 101 (492)
T ss_pred cCCcceeEeccCCccccHHHHHHhcccccceeeeeeec---cchhhhhhhcchhhhhheeecccccCccccCcceeehhh
Confidence 35889999999999999999999999999999998863 355899999999998885544433 3346888999986
Q ss_pred cCCCCCCCCCC-----------------CCCCCCCCC---CCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEE
Q 020783 81 HGGRRHSSSMD-----------------RYSSYSSGG---SRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQ 140 (321)
Q Consensus 81 ~~~~~~~~~~~-----------------~~~~~~~~~---~~~~~~~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~ 140 (321)
....-...... ........+ ...+....-..+.|+++-..++-+-|-.+|++||.|..|.
T Consensus 102 n~~~lkt~s~p~q~r~~~vy~~~s~~q~~~~~~s~~~~~~G~~~~~n~vLr~iie~m~ypVslDVLHqvFS~fG~VlKIi 181 (492)
T KOG1190|consen 102 NHSELKTDSQPNQIRGQAVYQAVSSVQEIVLPLSASAVVVGNEDGPNPVLRTIIENMFYPVSLDVLHQVFSKFGFVLKII 181 (492)
T ss_pred hHHHHhccCchhhhhhhhHHhhhhcccccccccccccccccccCCCceeEEEEeccceeeeEHHHHHHHHhhcceeEEEE
Confidence 53321111100 000000000 0111122335788899999999999999999999999998
Q ss_pred EEEcCCCcEEEEEeCCHHHHHHHHHHhCCCcccCccceeEEEEEe
Q 020783 141 VFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 185 (321)
Q Consensus 141 i~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~i~v~~ 185 (321)
-+...++-.|.|+|.+++.|+.|...|+|..+-... +.+++..
T Consensus 182 TF~Knn~FQALvQy~d~~sAq~AK~aLdGqnIyngc--CtLrId~ 224 (492)
T KOG1190|consen 182 TFTKNNGFQALVQYTDAVSAQAAKLALDGQNIYNGC--CTLRIDF 224 (492)
T ss_pred EEecccchhhhhhccchhhHHHHHHhccCCcccCce--eEEEeeh
Confidence 888888878999999999999999999999886643 5555543
No 79
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.34 E-value=6.6e-11 Score=106.64 Aligned_cols=74 Identities=22% Similarity=0.344 Sum_probs=64.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEE--ccCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEE
Q 020783 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDL--KIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (321)
Q Consensus 6 ~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l--~~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~ 79 (321)
..++||+||.+.+....|.+.|.--|+|+.|.+ .+.+.++|||.|+|.++-+|.+|+..|++..+.+++..+.+
T Consensus 215 ~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~vi~y~hpveavqaIsml~~~g~~~~~~~~Rl 290 (608)
T KOG4212|consen 215 HNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAVIEYDHPVEAVQAISMLDRQGLFDRRMTVRL 290 (608)
T ss_pred cceeeeeccccccchHHHHHHhccceeeeeeceeeccccccCCeeEEEecchHHHHHHHHhhccCCCccccceeec
Confidence 467999999999999999999999999999888 34578899999999999999999999998776666655554
No 80
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.33 E-value=3.8e-11 Score=110.60 Aligned_cols=158 Identities=22% Similarity=0.291 Sum_probs=115.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEc--cC----CCCCc---EEEEEEcCHHHHHHHHHhcCCcccCCceE
Q 020783 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLK--IP----PRPPG---YAFLEFEDYRDAEDAIRGRDGYNFDGYRL 75 (321)
Q Consensus 5 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~--~~----~~~kg---~aFVeF~~~e~A~~A~~~l~g~~i~g~~i 75 (321)
-++.||||+||++++|++|...|..||.+. |..+ .. -.++| |+|+.|+++.++.+-+....- .+..+
T Consensus 258 ~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~---~~~~~ 333 (520)
T KOG0129|consen 258 YSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE---GEGNY 333 (520)
T ss_pred cccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh---cccce
Confidence 468899999999999999999999999763 2332 11 13466 999999999998887764432 44455
Q ss_pred EEEEccCCCCCCCCCCCCCCCCCC---CCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHH-hcCCcEEEEEEEcC----CC
Q 020783 76 RVELAHGGRRHSSSMDRYSSYSSG---GSRGVSRRSDYRVLVTGLPSSASWQDLKDHMR-RAGDVCFSQVFRDR----GG 147 (321)
Q Consensus 76 ~V~~a~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~i~V~nl~~~~t~~~l~~~f~-~~G~i~~~~i~~~~----~~ 147 (321)
.++++...........+....... -....+..+..||||++||..++.++|..+|. -||.|.++.|-.|+ ..
T Consensus 334 yf~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPk 413 (520)
T KOG0129|consen 334 YFKVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPK 413 (520)
T ss_pred EEEEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCC
Confidence 555555444433222222111111 11445566788999999999999999999999 79999999998883 34
Q ss_pred cEEEEEeCCHHHHHHHHHH
Q 020783 148 MTGIVDYTSYDDMKYAIRK 166 (321)
Q Consensus 148 g~afV~f~~~~~a~~A~~~ 166 (321)
|-|-|.|.+...-.+||..
T Consensus 414 GaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 414 GAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred CcceeeecccHHHHHHHhh
Confidence 7899999999999999854
No 81
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.31 E-value=4.1e-12 Score=114.67 Aligned_cols=77 Identities=29% Similarity=0.515 Sum_probs=72.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEccCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEccCCCCC
Q 020783 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRH 86 (321)
Q Consensus 7 ~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a~~~~~~ 86 (321)
+.|||.||+.++|++.|.++|++||+|..|+.+ +.||||-|.+-++|.+|++.|||..|+|..|.|.+|++....
T Consensus 260 KvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~-----rDYaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP~~k~ 334 (506)
T KOG0117|consen 260 KVLYVRNLMESTTEETLKKLFNEFGKVERVKKP-----RDYAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKPVDKK 334 (506)
T ss_pred eeeeeeccchhhhHHHHHHHHHhccceEEeecc-----cceeEEeecchHHHHHHHHHhcCceecCceEEEEecCChhhh
Confidence 689999999999999999999999999999887 669999999999999999999999999999999999987755
Q ss_pred CC
Q 020783 87 SS 88 (321)
Q Consensus 87 ~~ 88 (321)
..
T Consensus 335 k~ 336 (506)
T KOG0117|consen 335 KK 336 (506)
T ss_pred cc
Confidence 44
No 82
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.30 E-value=1.1e-11 Score=109.87 Aligned_cols=176 Identities=19% Similarity=0.195 Sum_probs=123.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcc-----CCeeEEEEc-cCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEc
Q 020783 7 RTLYVGNLPGDTRMREVEDLFYKY-----GPIVDIDLK-IPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (321)
Q Consensus 7 ~~l~V~nLp~~~te~~L~~~F~~~-----G~I~~v~l~-~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a 80 (321)
-.|-..+||+++|+.|+.+||..- |...-+.+. .+|+..|-|||.|..+++|+.|+. -|...++-+.|.+..+
T Consensus 162 vivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~-khrq~iGqRYIElFRS 240 (508)
T KOG1365|consen 162 VIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALR-KHRQNIGQRYIELFRS 240 (508)
T ss_pred eEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHH-HHHHHHhHHHHHHHHH
Confidence 456788999999999999999733 332233333 378999999999999999999998 5666666666655433
Q ss_pred cCCCC-------CCCCCC--CCCC--CCCCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCC-cEE--EEEEEcCC
Q 020783 81 HGGRR-------HSSSMD--RYSS--YSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGD-VCF--SQVFRDRG 146 (321)
Q Consensus 81 ~~~~~-------~~~~~~--~~~~--~~~~~~~~~~~~~~~~i~V~nl~~~~t~~~l~~~f~~~G~-i~~--~~i~~~~~ 146 (321)
..... ....-. .... ........+......+|.+.+||+.++.++|.++|..|.. |.+ +++..|..
T Consensus 241 TaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~q 320 (508)
T KOG1365|consen 241 TAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQ 320 (508)
T ss_pred hHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCC
Confidence 21100 000000 0000 0011223344455778999999999999999999999874 444 77777744
Q ss_pred ---CcEEEEEeCCHHHHHHHHHHhCCCcccCccceeEEEEEecC
Q 020783 147 ---GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYD 187 (321)
Q Consensus 147 ---~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~i~v~~~~ 187 (321)
.|-|||+|.+.++|..|..+.+++.+.+ ++|.+-...
T Consensus 321 GrPSGeAFIqm~nae~a~aaaqk~hk~~mk~----RYiEvfp~S 360 (508)
T KOG1365|consen 321 GRPSGEAFIQMRNAERARAAAQKCHKKLMKS----RYIEVFPCS 360 (508)
T ss_pred CCcChhhhhhhhhhHHHHHHHHHHHHhhccc----ceEEEeecc
Confidence 3799999999999999999999888877 888886543
No 83
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.28 E-value=1.5e-11 Score=93.88 Aligned_cols=77 Identities=22% Similarity=0.315 Sum_probs=70.2
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCCC----cEEEEEeCCHHHHHHHHHHhCCCcccCccceeEE
Q 020783 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 181 (321)
Q Consensus 106 ~~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~----g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~i 181 (321)
...+|.|||.++...+++++|.+.|..||+|.++++..+..+ |||.|+|++.++|+.|+..+||..+.| ..|
T Consensus 69 SVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~----q~v 144 (170)
T KOG0130|consen 69 SVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLG----QNV 144 (170)
T ss_pred ceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhC----Cce
Confidence 456899999999999999999999999999999999999765 599999999999999999999999999 667
Q ss_pred EEEec
Q 020783 182 RVREY 186 (321)
Q Consensus 182 ~v~~~ 186 (321)
.|+..
T Consensus 145 ~VDw~ 149 (170)
T KOG0130|consen 145 SVDWC 149 (170)
T ss_pred eEEEE
Confidence 66654
No 84
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.27 E-value=5.3e-12 Score=108.23 Aligned_cols=79 Identities=38% Similarity=0.660 Sum_probs=73.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEccCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEccC
Q 020783 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (321)
Q Consensus 3 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a~~ 82 (321)
+..+++|+||||.+.+|.+||+..|++||.|.+|++. ++|+||-|.-.++|..|+..|||..+.|++++|+++..
T Consensus 75 sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdiv-----kdy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~sts 149 (346)
T KOG0109|consen 75 SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIV-----KDYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTS 149 (346)
T ss_pred CCCccccccCCCCccccCHHHhhhhcccCCceeeeee-----cceeEEEEeeccchHHHHhcccccccccceeeeeeecc
Confidence 3578999999999999999999999999999999998 89999999999999999999999999999999999886
Q ss_pred CCCC
Q 020783 83 GRRH 86 (321)
Q Consensus 83 ~~~~ 86 (321)
.-..
T Consensus 150 rlrt 153 (346)
T KOG0109|consen 150 RLRT 153 (346)
T ss_pred cccc
Confidence 6433
No 85
>smart00361 RRM_1 RNA recognition motif.
Probab=99.25 E-value=2.6e-11 Score=85.17 Aligned_cols=58 Identities=26% Similarity=0.457 Sum_probs=51.9
Q ss_pred HHHHHHHHh----ccCCeeEEE-Ec---cC--CCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEE
Q 020783 20 MREVEDLFY----KYGPIVDID-LK---IP--PRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRV 77 (321)
Q Consensus 20 e~~L~~~F~----~~G~I~~v~-l~---~~--~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V 77 (321)
+++|+++|. +||.|..|. +. .+ ++++|||||+|.+.++|.+|+..|||..++|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 678999999 999999985 42 23 788999999999999999999999999999999876
No 86
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.25 E-value=5.4e-11 Score=102.58 Aligned_cols=74 Identities=15% Similarity=0.232 Sum_probs=67.5
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcC-CCcEEEEEeCCHHHHHHHHHHhCCCcccCccceeEEEEEecC
Q 020783 109 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDR-GGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYD 187 (321)
Q Consensus 109 ~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~i~v~~~~ 187 (321)
..+|||+|||+.+++++|+++|..||+|..+.|..+. .++||||+|.+.++|+.|+ .|+|..+.| +.|.+....
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~Al-lLnG~~l~g----r~V~Vt~a~ 78 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETAL-LLSGATIVD----QSVTITPAE 78 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHH-HhcCCeeCC----ceEEEEecc
Confidence 4589999999999999999999999999999999886 4589999999999999999 599999999 778887754
No 87
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.24 E-value=6e-10 Score=98.71 Aligned_cols=176 Identities=16% Similarity=0.191 Sum_probs=135.0
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHHHHhccCCeeEEEEccCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEcc
Q 020783 3 SRSSRTLYVGNLPGD-TRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (321)
Q Consensus 3 ~~~~~~l~V~nLp~~-~te~~L~~~F~~~G~I~~v~l~~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a~ 81 (321)
.-+.+.+.|.+|... +.-+.|..+|-.||.|..|++++|. .|.|.||+.+..+.+.|+.+||+..+-|.+|.|.+++
T Consensus 284 ~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk--~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~Sk 361 (494)
T KOG1456|consen 284 GAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK--PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSK 361 (494)
T ss_pred CCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc--cceeEEEcCcHHHHHHHHHHhccCccccceEEEeecc
Confidence 346788999999765 7778899999999999999998764 6889999999999999999999999999999999988
Q ss_pred CCCCCCCC-------CCCCCCCCCC----------CCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCC-cEEEEEEE
Q 020783 82 GGRRHSSS-------MDRYSSYSSG----------GSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGD-VCFSQVFR 143 (321)
Q Consensus 82 ~~~~~~~~-------~~~~~~~~~~----------~~~~~~~~~~~~i~V~nl~~~~t~~~l~~~f~~~G~-i~~~~i~~ 143 (321)
..-..+-. ......|... .......++...|+.-|.|..+||+.|.++|..-+. ...++++.
T Consensus 362 Q~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~nek~v~~~svkvFp 441 (494)
T KOG1456|consen 362 QNFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGICNEKDVPPTSVKVFP 441 (494)
T ss_pred ccccccCCceecCCCCcchhhcccccccccCChhHhhcccccCCcceeEEecCCCccCHHHHHHHhhhcCCCcceEEeec
Confidence 55332211 0001111111 112223456789999999999999999999998763 44456654
Q ss_pred cCC--CcEEEEEeCCHHHHHHHHHHhCCCcccCccceeE
Q 020783 144 DRG--GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSY 180 (321)
Q Consensus 144 ~~~--~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 180 (321)
.+. .-.+.+||++.++|.+|+..+|...+.+....-.
T Consensus 442 ~kserSssGllEfe~~s~Aveal~~~NH~pi~~p~gs~P 480 (494)
T KOG1456|consen 442 LKSERSSSGLLEFENKSDAVEALMKLNHYPIEGPNGSFP 480 (494)
T ss_pred ccccccccceeeeehHHHHHHHHHHhccccccCCCCCCC
Confidence 433 2488999999999999999999999987554333
No 88
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.24 E-value=3.4e-11 Score=104.93 Aligned_cols=80 Identities=19% Similarity=0.216 Sum_probs=72.2
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCCC--cEEEEEeCCHHHHHHHHHHhCCCcccCccceeEE
Q 020783 104 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG--MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 181 (321)
Q Consensus 104 ~~~~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~--g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~i 181 (321)
.......+|+|.|||....+.||+.+|.+||+|.+|.|+.+..+ ||+||+|++.+||++|..+|||..+.| ++|
T Consensus 91 ~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEG----RkI 166 (376)
T KOG0125|consen 91 SSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEG----RKI 166 (376)
T ss_pred CCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeec----eEE
Confidence 34456779999999999999999999999999999999998654 899999999999999999999999999 888
Q ss_pred EEEecC
Q 020783 182 RVREYD 187 (321)
Q Consensus 182 ~v~~~~ 187 (321)
.|....
T Consensus 167 EVn~AT 172 (376)
T KOG0125|consen 167 EVNNAT 172 (376)
T ss_pred EEeccc
Confidence 886543
No 89
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.21 E-value=9.5e-11 Score=85.46 Aligned_cols=78 Identities=19% Similarity=0.224 Sum_probs=70.2
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCCC-cEEEEEeCCHHHHHHHHHHhCCCcccCccceeEEEEE
Q 020783 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG-MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVR 184 (321)
Q Consensus 106 ~~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~-g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~i~v~ 184 (321)
+..+..+||.|||..+|.+++.++|.+||.|..+.+-..+++ |.|||-|++..+|.+|++.|.|..+.+ +++.+-
T Consensus 15 pevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~----ryl~vl 90 (124)
T KOG0114|consen 15 PEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDN----RYLVVL 90 (124)
T ss_pred hhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCC----ceEEEE
Confidence 345678999999999999999999999999999999887665 799999999999999999999999999 888775
Q ss_pred ecC
Q 020783 185 EYD 187 (321)
Q Consensus 185 ~~~ 187 (321)
...
T Consensus 91 yyq 93 (124)
T KOG0114|consen 91 YYQ 93 (124)
T ss_pred ecC
Confidence 543
No 90
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.21 E-value=7.7e-11 Score=82.67 Aligned_cols=63 Identities=25% Similarity=0.435 Sum_probs=57.4
Q ss_pred EEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCC---CcEEEEEeCCHHHHHHHHHHhCCCcccC
Q 020783 112 VLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG---GMTGIVDYTSYDDMKYAIRKLDRSEFRN 174 (321)
Q Consensus 112 i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~---~g~afV~f~~~~~a~~A~~~l~g~~~~g 174 (321)
|+|+|||..+++++|.++|..||.|..+.+..+.. .++|||+|.+.++|..|++.+++..+.|
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g 66 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDG 66 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECC
Confidence 78999999999999999999999999999998864 3699999999999999999999999999
No 91
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.19 E-value=7.6e-11 Score=89.30 Aligned_cols=78 Identities=21% Similarity=0.209 Sum_probs=70.8
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCCC----cEEEEEeCCHHHHHHHHHHhCCCcccCccceeEEE
Q 020783 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 182 (321)
Q Consensus 107 ~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~----g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~i~ 182 (321)
..+++|||+||..-++++.|.++|.++|+|..|.|-.+.++ |||||+|.+.++|+.|++.+++..++. +.|+
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLdd----r~ir 109 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDD----RPIR 109 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccc----ccee
Confidence 45679999999999999999999999999999999888765 699999999999999999999999999 7888
Q ss_pred EEecCC
Q 020783 183 VREYDS 188 (321)
Q Consensus 183 v~~~~~ 188 (321)
++.+.+
T Consensus 110 ~D~D~G 115 (153)
T KOG0121|consen 110 IDWDAG 115 (153)
T ss_pred eecccc
Confidence 876543
No 92
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.16 E-value=7.5e-10 Score=98.09 Aligned_cols=168 Identities=15% Similarity=0.193 Sum_probs=128.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEccCCCCCcEEEEEEcCHHHHHHHHHhc--CCcccCCceEEEEEcc
Q 020783 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGR--DGYNFDGYRLRVELAH 81 (321)
Q Consensus 4 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~~~~~kg~aFVeF~~~e~A~~A~~~l--~g~~i~g~~i~V~~a~ 81 (321)
.++-.|.|.+|...++|.+|.+-++.||.|..+.++.- +.-|.|+|++.+.|+.++..- +-..+.|+.-.+.++.
T Consensus 29 ~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~---~r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al~NySt 105 (494)
T KOG1456|consen 29 NPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPH---KRQALVEFEDIEGAKNCVNFAADNQIYIAGQQALFNYST 105 (494)
T ss_pred CCCceEEEeccccccchhHHHHHHhcCCceEEEEeccc---cceeeeeeccccchhhheehhccCcccccCchhhcccch
Confidence 46778999999999999999999999999999888532 567999999999999998633 4466678887777765
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCcEEEE--eCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCCCcEEEEEeCCHHH
Q 020783 82 GGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLV--TGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDD 159 (321)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V--~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~afV~f~~~~~ 159 (321)
........ ..+..++..|.+ -|--+.+|-+.|..++...|+|..|.|++. ++-.|+|||++.+.
T Consensus 106 sq~i~R~g-------------~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk-ngVQAmVEFdsv~~ 171 (494)
T KOG1456|consen 106 SQCIERPG-------------DESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK-NGVQAMVEFDSVEV 171 (494)
T ss_pred hhhhccCC-------------CCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec-cceeeEEeechhHH
Confidence 44322110 112223334443 455567899999999999999999999887 55589999999999
Q ss_pred HHHHHHHhCCCcccCccceeEEEEEecCCCC
Q 020783 160 MKYAIRKLDRSEFRNAFSRSYVRVREYDSRR 190 (321)
Q Consensus 160 a~~A~~~l~g~~~~g~~~~~~i~v~~~~~~r 190 (321)
|++|...|||..+-.-- +.+.++..+..|
T Consensus 172 AqrAk~alNGADIYsGC--CTLKIeyAkP~r 200 (494)
T KOG1456|consen 172 AQRAKAALNGADIYSGC--CTLKIEYAKPTR 200 (494)
T ss_pred HHHHHhhcccccccccc--eeEEEEecCcce
Confidence 99999999999885433 556666555443
No 93
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.16 E-value=1.4e-10 Score=108.64 Aligned_cols=176 Identities=21% Similarity=0.317 Sum_probs=136.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcc-----------C-CeeEEEEccCCCCCcEEEEEEcCHHHHHHHHHhcCCccc
Q 020783 3 SRSSRTLYVGNLPGDTRMREVEDLFYKY-----------G-PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNF 70 (321)
Q Consensus 3 ~~~~~~l~V~nLp~~~te~~L~~~F~~~-----------G-~I~~v~l~~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i 70 (321)
+.....+||+++|+.++++.+..+|..- | .|..+.+. ..+.||||+|.+.++|..|+. +++..+
T Consensus 172 t~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n---~~~nfa~ie~~s~~~at~~~~-~~~~~f 247 (500)
T KOG0120|consen 172 TRQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLN---LEKNFAFIEFRSISEATEAMA-LDGIIF 247 (500)
T ss_pred hhhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeec---ccccceeEEecCCCchhhhhc-ccchhh
Confidence 4556789999999999999999999754 3 46666664 348899999999999999999 999999
Q ss_pred CCceEEEEEccCCCCCCCCCCC---CCCCCCCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCC-
Q 020783 71 DGYRLRVELAHGGRRHSSSMDR---YSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG- 146 (321)
Q Consensus 71 ~g~~i~V~~a~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~- 146 (321)
.|..+++.-.......+..... ...+...............++|++||...++..+.++...||++....+..+..
T Consensus 248 ~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~ 327 (500)
T KOG0120|consen 248 EGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSAT 327 (500)
T ss_pred CCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeeccccc
Confidence 9999887665443332221111 111222222333445677899999999999999999999999999988887754
Q ss_pred ---CcEEEEEeCCHHHHHHHHHHhCCCcccCccceeEEEEEec
Q 020783 147 ---GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREY 186 (321)
Q Consensus 147 ---~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~i~v~~~ 186 (321)
+||||.+|.++.....|+..|||..+++ ..+.+..+
T Consensus 328 g~skg~af~ey~dpsvtd~A~agLnGm~lgd----~~lvvq~A 366 (500)
T KOG0120|consen 328 GNSKGFAFCEYCDPSVTDQAIAGLNGMQLGD----KKLVVQRA 366 (500)
T ss_pred ccccceeeeeeeCCcchhhhhcccchhhhcC----ceeEeehh
Confidence 4799999999999999999999999999 55555443
No 94
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.15 E-value=3e-11 Score=117.38 Aligned_cols=156 Identities=20% Similarity=0.271 Sum_probs=132.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEccC--CCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEcc
Q 020783 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIP--PRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (321)
Q Consensus 4 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~~--~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a~ 81 (321)
..+.|||+|||+..+++.+|+..|..+|.|..|.|+.+ +....||||.|.+...+-.|...+.+..|..-.+.+.+..
T Consensus 370 ~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG~ 449 (975)
T KOG0112|consen 370 RATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLGQ 449 (975)
T ss_pred hhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCcccccccc
Confidence 46789999999999999999999999999999999654 4557899999999999999999999988876666665543
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCCCcEEEEEeCCHHHHH
Q 020783 82 GGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMK 161 (321)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~afV~f~~~~~a~ 161 (321)
.. ....+.+++++|+.-+....|...|..||.|..|.+-.... ||+|+|++...|+
T Consensus 450 ~k----------------------st~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hgq~--yayi~yes~~~aq 505 (975)
T KOG0112|consen 450 PK----------------------STPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHGQP--YAYIQYESPPAAQ 505 (975)
T ss_pred cc----------------------cccceeeccCCCCCCChHHHHHHHhhccCcceeeecccCCc--ceeeecccCccch
Confidence 31 12345899999999999999999999999999987765543 9999999999999
Q ss_pred HHHHHhCCCcccCccceeEEEEEe
Q 020783 162 YAIRKLDRSEFRNAFSRSYVRVRE 185 (321)
Q Consensus 162 ~A~~~l~g~~~~g~~~~~~i~v~~ 185 (321)
.|+..|.|..+++-. ..++|..
T Consensus 506 ~a~~~~rgap~G~P~--~r~rvdl 527 (975)
T KOG0112|consen 506 AATHDMRGAPLGGPP--RRLRVDL 527 (975)
T ss_pred hhHHHHhcCcCCCCC--ccccccc
Confidence 999999999999855 3466643
No 95
>PLN03213 repressor of silencing 3; Provisional
Probab=99.14 E-value=1.9e-10 Score=105.22 Aligned_cols=77 Identities=17% Similarity=0.287 Sum_probs=70.1
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCCCcEEEEEeCCH--HHHHHHHHHhCCCcccCccceeEEEEEe
Q 020783 108 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSY--DDMKYAIRKLDRSEFRNAFSRSYVRVRE 185 (321)
Q Consensus 108 ~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~afV~f~~~--~~a~~A~~~l~g~~~~g~~~~~~i~v~~ 185 (321)
...+|||+||++.+++++|...|..||.|..+.|+.....|||||+|.+. .++.+|+..|||..+.| +.|+|..
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKG----R~LKVNK 84 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKG----GRLRLEK 84 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecC----ceeEEee
Confidence 45699999999999999999999999999999999777788999999987 78999999999999999 8888876
Q ss_pred cCC
Q 020783 186 YDS 188 (321)
Q Consensus 186 ~~~ 188 (321)
.+.
T Consensus 85 AKP 87 (759)
T PLN03213 85 AKE 87 (759)
T ss_pred ccH
Confidence 543
No 96
>smart00362 RRM_2 RNA recognition motif.
Probab=99.14 E-value=4.4e-10 Score=78.18 Aligned_cols=69 Identities=23% Similarity=0.370 Sum_probs=61.8
Q ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcC--CCcEEEEEeCCHHHHHHHHHHhCCCcccCccceeEEEE
Q 020783 111 RVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDR--GGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 183 (321)
Q Consensus 111 ~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~i~v 183 (321)
+|+|.|||..+++++|.++|.+||++..+.+..+. ..++|||+|.+.++|+.|+..+++..+.| ..+.+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~----~~i~v 71 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGG----RPLRV 71 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECC----EEEee
Confidence 48999999999999999999999999999988765 34699999999999999999999999988 55544
No 97
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.13 E-value=6.9e-11 Score=100.24 Aligned_cols=82 Identities=22% Similarity=0.436 Sum_probs=75.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcc---CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEE
Q 020783 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (321)
Q Consensus 3 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~---~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~ 79 (321)
+-+.|+|||-.||.+.++.||.+.|-.||.|.+.++.. |+.+|.|+||.|.++.+|+.||..|||..|+-++|+|++
T Consensus 282 GPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQL 361 (371)
T KOG0146|consen 282 GPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQL 361 (371)
T ss_pred CCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhh
Confidence 35789999999999999999999999999999999843 688999999999999999999999999999999999998
Q ss_pred ccCCC
Q 020783 80 AHGGR 84 (321)
Q Consensus 80 a~~~~ 84 (321)
-.++.
T Consensus 362 KRPkd 366 (371)
T KOG0146|consen 362 KRPKD 366 (371)
T ss_pred cCccc
Confidence 76554
No 98
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.12 E-value=5e-10 Score=95.16 Aligned_cols=76 Identities=18% Similarity=0.280 Sum_probs=68.1
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCCC-cEEEEEeCCHHHHHHHHHHhCCCcccCccceeEEEEEec
Q 020783 108 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG-MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREY 186 (321)
Q Consensus 108 ~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~-g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~i~v~~~ 186 (321)
.+++|+|+||++.+++++|+++|..||+|.+|.|..+... ++|||+|.++++|+.|+ .|+|..+.+ ..|.+...
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAl-lLnGa~l~d----~~I~It~~ 78 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAV-LLSGATIVD----QRVCITRW 78 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHH-hcCCCeeCC----ceEEEEeC
Confidence 4579999999999999999999999999999999988543 69999999999999999 899999999 67777665
Q ss_pred CC
Q 020783 187 DS 188 (321)
Q Consensus 187 ~~ 188 (321)
..
T Consensus 79 ~~ 80 (243)
T PLN03121 79 GQ 80 (243)
T ss_pred cc
Confidence 43
No 99
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.10 E-value=2.8e-10 Score=93.40 Aligned_cols=79 Identities=24% Similarity=0.349 Sum_probs=72.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcc-CCeeEEEE---ccCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEc
Q 020783 5 SSRTLYVGNLPGDTRMREVEDLFYKY-GPIVDIDL---KIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (321)
Q Consensus 5 ~~~~l~V~nLp~~~te~~L~~~F~~~-G~I~~v~l---~~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a 80 (321)
....+||..+|.-+-+.+|..+|.+| |.|..+.+ +.||.++|||||+|++++.|+-|.+.||+..+.|+.|.|.+-
T Consensus 48 ~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vm 127 (214)
T KOG4208|consen 48 IEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVM 127 (214)
T ss_pred CccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEe
Confidence 45678999999999999999999999 78888888 569999999999999999999999999999999999999996
Q ss_pred cCC
Q 020783 81 HGG 83 (321)
Q Consensus 81 ~~~ 83 (321)
.+.
T Consensus 128 ppe 130 (214)
T KOG4208|consen 128 PPE 130 (214)
T ss_pred Cch
Confidence 654
No 100
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.10 E-value=1.9e-10 Score=110.28 Aligned_cols=77 Identities=30% Similarity=0.514 Sum_probs=72.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEccCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEccCCCC
Q 020783 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRR 85 (321)
Q Consensus 6 ~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a~~~~~ 85 (321)
++|||||+|+.++++.||..+|+.||+|.+|.|+. ++++|||.+..-.+|.+|+..|.+..+.++.|+|.|+.+...
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~---~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~G~ 497 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP---PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGKGP 497 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeecc---CCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccCCc
Confidence 68999999999999999999999999999999973 589999999999999999999999999999999999986654
No 101
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.10 E-value=6.2e-10 Score=93.50 Aligned_cols=79 Identities=27% Similarity=0.298 Sum_probs=71.7
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCCC----cEEEEEeCCHHHHHHHHHHhCCCcccCccceeEE
Q 020783 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 181 (321)
Q Consensus 106 ~~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~----g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~i 181 (321)
.....+|.|.||+.++++.+|+++|.+||.|..+++..+..+ |||||.|.+.++|.+|++.|||.-++. .-|
T Consensus 186 R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~----LIL 261 (270)
T KOG0122|consen 186 RDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDN----LIL 261 (270)
T ss_pred CCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccce----EEE
Confidence 345678999999999999999999999999999999999765 599999999999999999999999987 888
Q ss_pred EEEecCC
Q 020783 182 RVREYDS 188 (321)
Q Consensus 182 ~v~~~~~ 188 (321)
+|+...+
T Consensus 262 rvEwskP 268 (270)
T KOG0122|consen 262 RVEWSKP 268 (270)
T ss_pred EEEecCC
Confidence 8877654
No 102
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.06 E-value=2.9e-10 Score=91.41 Aligned_cols=81 Identities=20% Similarity=0.399 Sum_probs=71.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCeeE----EEEccCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEc
Q 020783 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVD----IDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (321)
Q Consensus 5 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~----v~l~~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a 80 (321)
-+-+|||+||.++++|..|.+.|+.||.+.. +....++.++|||||-|.+.|.+.+|+..|||..+..++|.|.++
T Consensus 95 vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya 174 (203)
T KOG0131|consen 95 VGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYA 174 (203)
T ss_pred ccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEE
Confidence 3468999999999999999999999998765 222457899999999999999999999999999999999999999
Q ss_pred cCCCC
Q 020783 81 HGGRR 85 (321)
Q Consensus 81 ~~~~~ 85 (321)
.....
T Consensus 175 ~k~~~ 179 (203)
T KOG0131|consen 175 FKKDT 179 (203)
T ss_pred EecCC
Confidence 86653
No 103
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=99.03 E-value=6.8e-11 Score=97.60 Aligned_cols=140 Identities=18% Similarity=0.246 Sum_probs=112.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcc--CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEcc
Q 020783 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (321)
Q Consensus 4 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~--~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a~ 81 (321)
...+||||+|+...|+|+-|.++|-+-|+|..|.|+. +++.| ||||.|+++.++.-|++.|||..+.+..|.|++-.
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~ 85 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRC 85 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhhccccc
Confidence 3568999999999999999999999999999999964 45556 99999999999999999999999999999998855
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCC---CcEEEEEeCCHH
Q 020783 82 GGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG---GMTGIVDYTSYD 158 (321)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~---~g~afV~f~~~~ 158 (321)
+....+ |...++++-+...|...|++..+.+..+.+ ..++|+.+.-.-
T Consensus 86 G~shap-----------------------------ld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~~ 136 (267)
T KOG4454|consen 86 GNSHAP-----------------------------LDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRLC 136 (267)
T ss_pred CCCcch-----------------------------hhhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhhh
Confidence 432111 445567777788888889888888876644 347888877766
Q ss_pred HHHHHHHHhCCCccc
Q 020783 159 DMKYAIRKLDRSEFR 173 (321)
Q Consensus 159 ~a~~A~~~l~g~~~~ 173 (321)
....++..+++....
T Consensus 137 ~~P~~~~~y~~l~~~ 151 (267)
T KOG4454|consen 137 AVPFALDLYQGLELF 151 (267)
T ss_pred cCcHHhhhhcccCcC
Confidence 667777766665543
No 104
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.02 E-value=9.9e-10 Score=96.63 Aligned_cols=76 Identities=30% Similarity=0.576 Sum_probs=67.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEccCCCCCcEEEEEEcCHHHHHHHH-HhcCCcccCCceEEEEEccC
Q 020783 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAI-RGRDGYNFDGYRLRVELAHG 82 (321)
Q Consensus 4 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~~~~~kg~aFVeF~~~e~A~~A~-~~l~g~~i~g~~i~V~~a~~ 82 (321)
+...+||||||-..++|.+|++.|.+||+|..+.+.. .+++|||+|.+.++|+.|. +.+|...|+|++|.|.|..+
T Consensus 226 ~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~---~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 226 TSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILP---RKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGRP 302 (377)
T ss_pred cceeEEEecccccchhHHHHHHHHhhcCCeeeEEeec---ccccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCCC
Confidence 3468999999999999999999999999999999963 2679999999999999977 45677888999999999887
No 105
>smart00360 RRM RNA recognition motif.
Probab=99.01 E-value=2.2e-09 Score=74.27 Aligned_cols=61 Identities=21% Similarity=0.397 Sum_probs=56.5
Q ss_pred EeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCC----CcEEEEEeCCHHHHHHHHHHhCCCcccC
Q 020783 114 VTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRN 174 (321)
Q Consensus 114 V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~----~g~afV~f~~~~~a~~A~~~l~g~~~~g 174 (321)
|+|||..+++++|.++|.+||.|..+.+..+.. .++|||+|.+.++|..|++.+++..+.|
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~ 65 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDG 65 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCC
Confidence 568999999999999999999999999998765 4699999999999999999999999988
No 106
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.00 E-value=5e-09 Score=73.18 Aligned_cols=69 Identities=23% Similarity=0.407 Sum_probs=62.5
Q ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCC---CcEEEEEeCCHHHHHHHHHHhCCCcccCccceeEEEE
Q 020783 111 RVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG---GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 183 (321)
Q Consensus 111 ~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~---~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~i~v 183 (321)
+|+|.|||..+++++|.++|..+|.|..+.+..++. .++|||+|.+.++|..|++.+++..+.| ..+.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~----~~~~v 72 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGG----RPLRV 72 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECC----eEEEE
Confidence 478999999999999999999999999999998764 5799999999999999999999999888 55544
No 107
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.91 E-value=3.7e-08 Score=90.63 Aligned_cols=172 Identities=20% Similarity=0.249 Sum_probs=119.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCeeE-EEEc--cCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEcc
Q 020783 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVD-IDLK--IPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (321)
Q Consensus 5 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~-v~l~--~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a~ 81 (321)
+...|-+.+||+.||++||.+||+..-.|.. |.+. ..+++.|-|||+|++.+.|++|+. -|...|.-+.|.|..+.
T Consensus 102 ~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~-rhre~iGhRYIEvF~Ss 180 (510)
T KOG4211|consen 102 NDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALG-RHRENIGHRYIEVFRSS 180 (510)
T ss_pred CCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHH-HHHHhhccceEEeehhH
Confidence 5678999999999999999999998865555 3333 246789999999999999999998 77788888888887654
Q ss_pred CCCCC------------CCCCC-----CC---------------------------------CC---CC---CC--CCC-
Q 020783 82 GGRRH------------SSSMD-----RY---------------------------------SS---YS---SG--GSR- 102 (321)
Q Consensus 82 ~~~~~------------~~~~~-----~~---------------------------------~~---~~---~~--~~~- 102 (321)
..... +..-+ +. .. +. .. ...
T Consensus 181 ~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~d~~~~gs~~~~~~~~~~ 260 (510)
T KOG4211|consen 181 RAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQDYGNFGSYGGGRDPNYP 260 (510)
T ss_pred HHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCccccccccccccccccccccC
Confidence 11000 00000 00 00 00 00 000
Q ss_pred ---CC-----------CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCC---CcEEEEEeCCHHHHHHHHH
Q 020783 103 ---GV-----------SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG---GMTGIVDYTSYDDMKYAIR 165 (321)
Q Consensus 103 ---~~-----------~~~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~---~g~afV~f~~~~~a~~A~~ 165 (321)
++ .......++..+||...++.++..+|....++ .++|...+. ++-|+|+|.+.++|..|+
T Consensus 261 ~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl~p~-~v~i~ig~dGr~TGEAdveF~t~edav~Am- 338 (510)
T KOG4211|consen 261 VSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPLNPY-RVHIEIGPDGRATGEADVEFATGEDAVGAM- 338 (510)
T ss_pred CCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCCCce-eEEEEeCCCCccCCcceeecccchhhHhhh-
Confidence 00 01122578889999999999999999976655 666665544 368999999999999999
Q ss_pred HhCCCcccCccceeEEEE
Q 020783 166 KLDRSEFRNAFSRSYVRV 183 (321)
Q Consensus 166 ~l~g~~~~g~~~~~~i~v 183 (321)
.-++..+.. +++..
T Consensus 339 skd~anm~h----rYVEl 352 (510)
T KOG4211|consen 339 GKDGANMGH----RYVEL 352 (510)
T ss_pred ccCCcccCc----ceeee
Confidence 446666666 55554
No 108
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.89 E-value=9.4e-09 Score=68.70 Aligned_cols=55 Identities=22% Similarity=0.382 Sum_probs=48.2
Q ss_pred HHHHHHhcCCcEEEEEEEcCCCcEEEEEeCCHHHHHHHHHHhCCCcccCccceeEEEEEe
Q 020783 126 LKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 185 (321)
Q Consensus 126 l~~~f~~~G~i~~~~i~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~i~v~~ 185 (321)
|.++|++||+|..+.+..+. +++|||+|.+.++|+.|+..|||..+.| ..|.+..
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-~~~a~V~f~~~~~A~~a~~~l~~~~~~g----~~l~V~~ 55 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-RGFAFVEFASVEDAQKAIEQLNGRQFNG----RPLKVSY 55 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-TTEEEEEESSHHHHHHHHHHHTTSEETT----EEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-CCEEEEEECCHHHHHHHHHHhCCCEECC----cEEEEEE
Confidence 67899999999999998776 5799999999999999999999999999 6777653
No 109
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.86 E-value=9.9e-09 Score=88.29 Aligned_cols=80 Identities=25% Similarity=0.436 Sum_probs=72.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEc--cCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEccCC
Q 020783 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLK--IPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (321)
Q Consensus 6 ~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~--~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a~~~ 83 (321)
+.+|+|.|||+.|+++||++||+.||.++.+.|. ..|.+.|.|=|.|...++|.+|++.+||..++|+.|++......
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~~ 162 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISSP 162 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecCc
Confidence 4679999999999999999999999988888884 46888999999999999999999999999999999999887655
Q ss_pred CC
Q 020783 84 RR 85 (321)
Q Consensus 84 ~~ 85 (321)
..
T Consensus 163 ~~ 164 (243)
T KOG0533|consen 163 SQ 164 (243)
T ss_pred cc
Confidence 43
No 110
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.84 E-value=1e-08 Score=95.54 Aligned_cols=81 Identities=26% Similarity=0.436 Sum_probs=73.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEccC---CCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEccC
Q 020783 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIP---PRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (321)
Q Consensus 6 ~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~~---~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a~~ 82 (321)
.++|||.+|+..+...+|..||++||+|+..+|..+ +--+.|+||++.+.++|.++|.+|+.+.|.|+.|.|+.+++
T Consensus 405 gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaKN 484 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAKN 484 (940)
T ss_pred ccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeeccc
Confidence 578999999999999999999999999999999653 34478999999999999999999999999999999999986
Q ss_pred CCCC
Q 020783 83 GRRH 86 (321)
Q Consensus 83 ~~~~ 86 (321)
....
T Consensus 485 Ep~G 488 (940)
T KOG4661|consen 485 EPGG 488 (940)
T ss_pred Cccc
Confidence 6543
No 111
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.84 E-value=4.3e-09 Score=94.10 Aligned_cols=83 Identities=24% Similarity=0.515 Sum_probs=74.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcc---CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEcc
Q 020783 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (321)
Q Consensus 5 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~---~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a~ 81 (321)
....||||+||+++++++|++.|++||.|..+.++. +..+++|+||+|.+++++.+++. ..-+.|.|+.+.|..|.
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevkrA~ 174 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVKRAI 174 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceeeecCceeeEeecc
Confidence 356899999999999999999999999999988854 46789999999999999999998 88899999999999999
Q ss_pred CCCCCCC
Q 020783 82 GGRRHSS 88 (321)
Q Consensus 82 ~~~~~~~ 88 (321)
+......
T Consensus 175 pk~~~~~ 181 (311)
T KOG4205|consen 175 PKEVMQS 181 (311)
T ss_pred chhhccc
Confidence 8765544
No 112
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.78 E-value=8.1e-10 Score=88.79 Aligned_cols=75 Identities=16% Similarity=0.227 Sum_probs=68.9
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCCC----cEEEEEeCCHHHHHHHHHHhCCCcccCccceeEEEEEe
Q 020783 110 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 185 (321)
Q Consensus 110 ~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~----g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~i~v~~ 185 (321)
.-|||+|||...|+.||...|++||+|++|.+..+..+ ||||+-|++..+..-|+..|||..+.| +.|+|+.
T Consensus 36 A~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~g----RtirVDH 111 (219)
T KOG0126|consen 36 AYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILG----RTIRVDH 111 (219)
T ss_pred eEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecc----eeEEeee
Confidence 46999999999999999999999999999999999765 599999999999999999999999999 8888876
Q ss_pred cCC
Q 020783 186 YDS 188 (321)
Q Consensus 186 ~~~ 188 (321)
-..
T Consensus 112 v~~ 114 (219)
T KOG0126|consen 112 VSN 114 (219)
T ss_pred ccc
Confidence 443
No 113
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.77 E-value=1.5e-09 Score=97.54 Aligned_cols=141 Identities=24% Similarity=0.385 Sum_probs=115.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcc--CCeeEEEEccCCCCCcEEEEEEcCHHHHHHHHHhcCC-cccCCceEEEEEccCC
Q 020783 7 RTLYVGNLPGDTRMREVEDLFYKY--GPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDG-YNFDGYRLRVELAHGG 83 (321)
Q Consensus 7 ~~l~V~nLp~~~te~~L~~~F~~~--G~I~~v~l~~~~~~kg~aFVeF~~~e~A~~A~~~l~g-~~i~g~~i~V~~a~~~ 83 (321)
+.+|||||.+.++.++|..+|..- |--..+.|+ .||+||.+.+...|.+|++.++| ..+.|+.+.|+.....
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k-----~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~k 76 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVK-----SGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPK 76 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeee-----cceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhH
Confidence 469999999999999999999643 333334444 79999999999999999999999 4568999999887765
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEE-cCCCcEEEEEeCCHHHHHH
Q 020783 84 RRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFR-DRGGMTGIVDYTSYDDMKY 162 (321)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~-~~~~g~afV~f~~~~~a~~ 162 (321)
+.. ...+.+.|+|+...++.|..+...||.+..|.... +......-|+|.+.+.+..
T Consensus 77 kqr----------------------srk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~etavvnvty~~~~~~~~ 134 (584)
T KOG2193|consen 77 KQR----------------------SRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSETAVVNVTYSAQQQHRQ 134 (584)
T ss_pred HHH----------------------hhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHHHHHHHHHHHHHHHHH
Confidence 422 23588999999999999999999999999986643 3333345578899999999
Q ss_pred HHHHhCCCcccC
Q 020783 163 AIRKLDRSEFRN 174 (321)
Q Consensus 163 A~~~l~g~~~~g 174 (321)
|+.+++|..+..
T Consensus 135 ai~kl~g~Q~en 146 (584)
T KOG2193|consen 135 AIHKLNGPQLEN 146 (584)
T ss_pred HHHhhcchHhhh
Confidence 999999999877
No 114
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.77 E-value=5e-09 Score=97.62 Aligned_cols=158 Identities=20% Similarity=0.170 Sum_probs=99.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEccCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEccCC
Q 020783 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (321)
Q Consensus 4 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a~~~ 83 (321)
-++.+|+|-|||..|++++|..+|+.||+|+.|.. +....+.+||+|.|..+|+.|++.|++..+.|+.|+.......
T Consensus 73 ~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~--t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k~~~~~~~ 150 (549)
T KOG4660|consen 73 MNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRE--TPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIKRPGGARR 150 (549)
T ss_pred CccceEEEEecCCcCCHHHHHHHHHhhcchhhhhc--ccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhcCCCcccc
Confidence 46789999999999999999999999999999544 4556899999999999999999999999999999882111111
Q ss_pred CCCCCCCC-CCCCCCCCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCCCcEEEEEeCCHHHHHH
Q 020783 84 RRHSSSMD-RYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKY 162 (321)
Q Consensus 84 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~afV~f~~~~~a~~ 162 (321)
........ -...+.......++-....--.++.|++..+..-++..+.-+|.+..-....-.. .-|++|.+..++..
T Consensus 151 ~~~~~~~~~~~~~~~~p~a~s~pgg~~~~~~~g~l~P~~s~~~~~~~~~~~~~~~~~~~~~~~h--q~~~~~~~~~s~a~ 228 (549)
T KOG4660|consen 151 AMGLQSGTSFLNHFGSPLANSPPGGWPRGQLFGMLSPTRSSILLEHISSVDGSSPGRETPLLNH--QRFVEFADNRSYAF 228 (549)
T ss_pred cchhcccchhhhhccchhhcCCCCCCcCCcceeeeccchhhhhhhcchhccCccccccccchhh--hhhhhhccccchhh
Confidence 10000000 0001111111111111111122333888777766666777777665511111111 56777877777755
Q ss_pred HHH
Q 020783 163 AIR 165 (321)
Q Consensus 163 A~~ 165 (321)
+..
T Consensus 229 ~~~ 231 (549)
T KOG4660|consen 229 SEP 231 (549)
T ss_pred ccc
Confidence 544
No 115
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=8.6e-09 Score=85.31 Aligned_cols=80 Identities=21% Similarity=0.228 Sum_probs=72.6
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcC----CCcEEEEEeCCHHHHHHHHHHhCCCcccCccceeEEEE
Q 020783 108 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDR----GGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 183 (321)
Q Consensus 108 ~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~i~v 183 (321)
...+|||++|..++++.-|...|=.||.|..|.++.+. ..+||||+|+..+||..|++.||+.++.| +.|+|
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~G----rtirV 84 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFG----RTIRV 84 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcc----eeEEE
Confidence 34699999999999999999999999999999999873 45799999999999999999999999999 88999
Q ss_pred EecCCCCC
Q 020783 184 REYDSRRS 191 (321)
Q Consensus 184 ~~~~~~r~ 191 (321)
....+-+-
T Consensus 85 N~AkP~ki 92 (298)
T KOG0111|consen 85 NLAKPEKI 92 (298)
T ss_pred eecCCccc
Confidence 88777654
No 116
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=98.75 E-value=3.1e-08 Score=83.05 Aligned_cols=66 Identities=15% Similarity=0.234 Sum_probs=57.6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCCC----cEEEEEeCCHHHHHHHHHHhCCCcccCc
Q 020783 109 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNA 175 (321)
Q Consensus 109 ~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~----g~afV~f~~~~~a~~A~~~l~g~~~~g~ 175 (321)
-++|||+||+..+..+.|++.|++||+|+...++.|+.. ||+||+|.+.+.|.+|++..| -.++|+
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~-piIdGR 81 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPN-PIIDGR 81 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCC-Cccccc
Confidence 358999999999999999999999999999999988654 699999999999999996543 455663
No 117
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.75 E-value=2e-08 Score=93.18 Aligned_cols=76 Identities=29% Similarity=0.541 Sum_probs=65.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEc--c-CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEccC
Q 020783 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLK--I-PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (321)
Q Consensus 6 ~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~--~-~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a~~ 82 (321)
..+|||.|||+++++++|.++|.+||+|+...|. . .+....||||+|++.++++.|++ .+-..+++++|.|+.-..
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~-Asp~~ig~~kl~Veek~~ 366 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIE-ASPLEIGGRKLNVEEKRP 366 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhh-cCccccCCeeEEEEeccc
Confidence 4569999999999999999999999999998872 2 24445999999999999999999 568889999999988553
No 118
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.73 E-value=2.6e-08 Score=85.92 Aligned_cols=81 Identities=25% Similarity=0.415 Sum_probs=73.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcc---CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEE
Q 020783 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (321)
Q Consensus 3 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~---~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~ 79 (321)
..+...+||||+.+.+|.+++...|+.||.|..+.++. .++++|||||+|.+.+.++.|+. |||..|.|+.|.|.+
T Consensus 98 ~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~ 176 (231)
T KOG4209|consen 98 EVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTL 176 (231)
T ss_pred ccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeee
Confidence 35678999999999999999999999999999888843 56899999999999999999999 999999999999999
Q ss_pred ccCCC
Q 020783 80 AHGGR 84 (321)
Q Consensus 80 a~~~~ 84 (321)
.....
T Consensus 177 ~r~~~ 181 (231)
T KOG4209|consen 177 KRTNV 181 (231)
T ss_pred eeeec
Confidence 77653
No 119
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.72 E-value=2e-08 Score=95.81 Aligned_cols=79 Identities=24% Similarity=0.442 Sum_probs=71.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEccC------CCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEE
Q 020783 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIP------PRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVE 78 (321)
Q Consensus 5 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~~------~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~ 78 (321)
.+++|||+||++.++++.|...|..||+|..+++++. .....+|||-|.+-.+|++|++.|+|..+.+..+++.
T Consensus 173 ~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~g 252 (877)
T KOG0151|consen 173 QTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKLG 252 (877)
T ss_pred cccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeeec
Confidence 3578999999999999999999999999999999653 3557899999999999999999999999999999999
Q ss_pred EccCC
Q 020783 79 LAHGG 83 (321)
Q Consensus 79 ~a~~~ 83 (321)
|++..
T Consensus 253 Wgk~V 257 (877)
T KOG0151|consen 253 WGKAV 257 (877)
T ss_pred ccccc
Confidence 98643
No 120
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=98.72 E-value=7.2e-08 Score=85.11 Aligned_cols=75 Identities=24% Similarity=0.393 Sum_probs=68.3
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcC----CCcEEEEEeCCHHHHHHHHHHhCCCcccCccceeEEEEE
Q 020783 109 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDR----GGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVR 184 (321)
Q Consensus 109 ~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~i~v~ 184 (321)
..+|||+|||..+++++|.++|.+||.+..+.+..+. ..|+|||+|.+.++|..|+..+++..+.| ..+.+.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~----~~~~v~ 190 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEG----RPLRVQ 190 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECC----ceeEee
Confidence 5899999999999999999999999999999998875 33799999999999999999999999999 777777
Q ss_pred ecC
Q 020783 185 EYD 187 (321)
Q Consensus 185 ~~~ 187 (321)
...
T Consensus 191 ~~~ 193 (306)
T COG0724 191 KAQ 193 (306)
T ss_pred ccc
Confidence 654
No 121
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.70 E-value=4e-08 Score=91.70 Aligned_cols=78 Identities=26% Similarity=0.349 Sum_probs=71.5
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCCC----cEEEEEeCCHHHHHHHHHHhCCCcccCccceeEEEEEe
Q 020783 110 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 185 (321)
Q Consensus 110 ~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~----g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~i~v~~ 185 (321)
..|||+|+|+++++++|.++|..+|.|..++++.|+.+ ||||++|.+.++|..|++.|||.++.| +.|++..
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~g----r~l~v~~ 94 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNG----RKLRVNY 94 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCC----ceEEeec
Confidence 68999999999999999999999999999999998655 599999999999999999999999999 8888887
Q ss_pred cCCCCC
Q 020783 186 YDSRRS 191 (321)
Q Consensus 186 ~~~~r~ 191 (321)
......
T Consensus 95 ~~~~~~ 100 (435)
T KOG0108|consen 95 ASNRKN 100 (435)
T ss_pred ccccch
Confidence 665543
No 122
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.69 E-value=1.1e-09 Score=106.39 Aligned_cols=134 Identities=23% Similarity=0.307 Sum_probs=114.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEc---cCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEc
Q 020783 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLK---IPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (321)
Q Consensus 4 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~---~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a 80 (321)
+...++||.||++.+.+.+|...|..+|.+..+.+. .+++.+|+||++|..+++|.+|+...++..++ +
T Consensus 665 R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g-K------- 736 (881)
T KOG0128|consen 665 RDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG-K------- 736 (881)
T ss_pred HHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh-h-------
Confidence 344678999999999999999999999988887773 36788999999999999999999966665544 1
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCC---CcEEEEEeCCH
Q 020783 81 HGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG---GMTGIVDYTSY 157 (321)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~---~g~afV~f~~~ 157 (321)
..++|.|.|...|.++++.++.++|.+..+.+..... .|.|+|.|.+.
T Consensus 737 -----------------------------~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~e 787 (881)
T KOG0128|consen 737 -----------------------------ISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTE 787 (881)
T ss_pred -----------------------------hhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCc
Confidence 1688999999999999999999999999987776543 47999999999
Q ss_pred HHHHHHHHHhCCCcccC
Q 020783 158 DDMKYAIRKLDRSEFRN 174 (321)
Q Consensus 158 ~~a~~A~~~l~g~~~~g 174 (321)
.++..++..++...+..
T Consensus 788 a~~s~~~~s~d~~~~rE 804 (881)
T KOG0128|consen 788 ADASRKVASVDVAGKRE 804 (881)
T ss_pred chhhhhcccchhhhhhh
Confidence 99999998777766655
No 123
>smart00361 RRM_1 RNA recognition motif.
Probab=98.64 E-value=2e-07 Score=65.31 Aligned_cols=57 Identities=18% Similarity=0.228 Sum_probs=47.0
Q ss_pred HHHHHHHHH----hcCCcEEEE-EEEcC------CCcEEEEEeCCHHHHHHHHHHhCCCcccCccceeEEEE
Q 020783 123 WQDLKDHMR----RAGDVCFSQ-VFRDR------GGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 183 (321)
Q Consensus 123 ~~~l~~~f~----~~G~i~~~~-i~~~~------~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~i~v 183 (321)
+++|+++|. +||.|..+. +..++ ..|+|||+|.+.++|.+|+..|||..+.| +.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~g----r~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDG----RTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECC----EEEEe
Confidence 467888888 999999985 54432 24799999999999999999999999999 55543
No 124
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=1.2e-07 Score=83.74 Aligned_cols=76 Identities=18% Similarity=0.271 Sum_probs=70.1
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCCCc----EEEEEeCCHHHHHHHHHHhCCCcccCccceeE
Q 020783 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM----TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSY 180 (321)
Q Consensus 105 ~~~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g----~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 180 (321)
..++.+.|||..|++-++.++|.-+|+.||+|..|.++.+..+| ||||+|++.++.++|.=+|++..+++ +.
T Consensus 235 ~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDD----rR 310 (479)
T KOG0415|consen 235 VKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDD----RR 310 (479)
T ss_pred cCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeecc----ce
Confidence 35678899999999999999999999999999999999998776 99999999999999999999999999 66
Q ss_pred EEEE
Q 020783 181 VRVR 184 (321)
Q Consensus 181 i~v~ 184 (321)
|.|.
T Consensus 311 IHVD 314 (479)
T KOG0415|consen 311 IHVD 314 (479)
T ss_pred EEee
Confidence 7664
No 125
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.60 E-value=6.5e-08 Score=86.19 Aligned_cols=170 Identities=19% Similarity=0.224 Sum_probs=128.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEc---cCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEcc
Q 020783 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLK---IPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (321)
Q Consensus 5 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~---~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a~ 81 (321)
..+++|++++..++.+.++..+|..+|.+....+. ....+++++++.|...+.+..|+.......+.+..+...+..
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 46789999999999999999999999977776662 245679999999999999999999444456667666666555
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCcEEE-EeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCCC----cEEEEEeCC
Q 020783 82 GGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVL-VTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTS 156 (321)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~----g~afV~f~~ 156 (321)
........ ...........+++ |.+++..++.++|+.+|..+|.|..+.+...+.. ++|+|+|..
T Consensus 167 ~~~~~~~n----------~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~ 236 (285)
T KOG4210|consen 167 RRGLRPKN----------KLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSA 236 (285)
T ss_pred cccccccc----------hhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhh
Confidence 44311110 01111122333555 9999999999999999999999999999988765 499999999
Q ss_pred HHHHHHHHHHhCCCcccCccceeEEEEEecCCC
Q 020783 157 YDDMKYAIRKLDRSEFRNAFSRSYVRVREYDSR 189 (321)
Q Consensus 157 ~~~a~~A~~~l~g~~~~g~~~~~~i~v~~~~~~ 189 (321)
...+..++.. +...+.+ ..+.+......
T Consensus 237 ~~~~~~~~~~-~~~~~~~----~~~~~~~~~~~ 264 (285)
T KOG4210|consen 237 GNSKKLALND-QTRSIGG----RPLRLEEDEPR 264 (285)
T ss_pred chhHHHHhhc-ccCcccC----cccccccCCCC
Confidence 9999999876 6777777 55666655544
No 126
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.50 E-value=6.4e-07 Score=63.24 Aligned_cols=71 Identities=27% Similarity=0.418 Sum_probs=50.3
Q ss_pred CeEEEcCCCCCCCHHH----HHHHHhccC-CeeEEEEccCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEcc
Q 020783 7 RTLYVGNLPGDTRMRE----VEDLFYKYG-PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (321)
Q Consensus 7 ~~l~V~nLp~~~te~~----L~~~F~~~G-~I~~v~l~~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a~ 81 (321)
..|||.|||.+.+... |++|+..|| +|..| . .+.|+|.|.+++.|..|.+.|+|-.+.|..|.|.+..
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v--~-----~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~ 75 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV--S-----GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSP 75 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE---------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS-
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE--e-----CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcC
Confidence 4699999999998876 567778886 77665 2 5789999999999999999999999999999999986
Q ss_pred CCC
Q 020783 82 GGR 84 (321)
Q Consensus 82 ~~~ 84 (321)
...
T Consensus 76 ~~r 78 (90)
T PF11608_consen 76 KNR 78 (90)
T ss_dssp -S-
T ss_pred Ccc
Confidence 544
No 127
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.49 E-value=5e-07 Score=76.21 Aligned_cols=69 Identities=22% Similarity=0.306 Sum_probs=62.4
Q ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCCCcEEEEEeCCHHHHHHHHHHhCCCcccCccceeEEEEEecC
Q 020783 111 RVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYD 187 (321)
Q Consensus 111 ~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~i~v~~~~ 187 (321)
.+||++||+.+.+.+|+.+|..||.+..+.+... |+||+|++..+|..|+..+|+.++.| ..+.++...
T Consensus 3 rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~g----f~fv~fed~rda~Dav~~l~~~~l~~----e~~vve~~r 71 (216)
T KOG0106|consen 3 RVYIGRLPYRARERDVERFFKGYGKIPDADMKNG----FGFVEFEDPRDADDAVHDLDGKELCG----ERLVVEHAR 71 (216)
T ss_pred ceeecccCCccchhHHHHHHhhccccccceeecc----cceeccCchhhhhcccchhcCceecc----eeeeeeccc
Confidence 6999999999999999999999999999998876 89999999999999999999999999 445555544
No 128
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.42 E-value=2.8e-07 Score=78.16 Aligned_cols=78 Identities=18% Similarity=0.328 Sum_probs=68.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEE---ccCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEcc
Q 020783 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDL---KIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (321)
Q Consensus 5 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l---~~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a~ 81 (321)
+...||.|.|..+++++.|-..|.+|-.....++ +.|++++||+||.|.+++++..|+..|||..++.+.|++.-+.
T Consensus 189 ~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS~ 268 (290)
T KOG0226|consen 189 DDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKSE 268 (290)
T ss_pred ccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhhh
Confidence 4578999999999999999999999976655555 5689999999999999999999999999999999998876544
Q ss_pred C
Q 020783 82 G 82 (321)
Q Consensus 82 ~ 82 (321)
.
T Consensus 269 w 269 (290)
T KOG0226|consen 269 W 269 (290)
T ss_pred H
Confidence 3
No 129
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.41 E-value=2.2e-07 Score=77.32 Aligned_cols=67 Identities=24% Similarity=0.388 Sum_probs=57.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEccCCCCCcEEEEEEcCHHHHHHHHHhcCCccc
Q 020783 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNF 70 (321)
Q Consensus 3 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i 70 (321)
.+...||||.||.++|||++|+.+|+.|-....++|... .....||++|++.+.|..|+..|+|..|
T Consensus 207 ~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~-~g~~vaf~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 207 ARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR-GGMPVAFADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred chhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC-CCcceEeecHHHHHHHHHHHHHhhccee
Confidence 355679999999999999999999999987777777432 2356899999999999999999999766
No 130
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=98.34 E-value=6.4e-06 Score=73.81 Aligned_cols=158 Identities=20% Similarity=0.233 Sum_probs=109.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCee---EEEEccCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEc
Q 020783 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIV---DIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (321)
Q Consensus 4 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~---~v~l~~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a 80 (321)
.++..|-..+|||..++.+|..||...-... -+-+.-.+.-.|.|.|.|.++|.-+.|++ -+...+.++.|.|--+
T Consensus 58 ~~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~Rdlalk-Rhkhh~g~ryievYka 136 (508)
T KOG1365|consen 58 DDNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALK-RHKHHMGTRYIEVYKA 136 (508)
T ss_pred CcceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhH-hhhhhccCCceeeecc
Confidence 3556677899999999999999997542111 11223345667899999999999999998 7888889999999876
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhc-----C--CcEEEEEEEcCCCcEEEEE
Q 020783 81 HGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRA-----G--DVCFSQVFRDRGGMTGIVD 153 (321)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~nl~~~~t~~~l~~~f~~~-----G--~i~~~~i~~~~~~g~afV~ 153 (321)
....-..-. .........-.++.....|.+.+||.++++.++.++|..- | .|.+|.-..++.+|-|||.
T Consensus 137 ~ge~f~~ia----gg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvl 212 (508)
T KOG1365|consen 137 TGEEFLKIA----GGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVL 212 (508)
T ss_pred CchhheEec----CCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEE
Confidence 654321100 0001111122233445678889999999999999999632 2 2334444445566899999
Q ss_pred eCCHHHHHHHHHH
Q 020783 154 YTSYDDMKYAIRK 166 (321)
Q Consensus 154 f~~~~~a~~A~~~ 166 (321)
|..+++|+.|+.+
T Consensus 213 fa~ee~aq~aL~k 225 (508)
T KOG1365|consen 213 FACEEDAQFALRK 225 (508)
T ss_pred ecCHHHHHHHHHH
Confidence 9999999999954
No 131
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.34 E-value=3.8e-06 Score=62.15 Aligned_cols=77 Identities=18% Similarity=0.207 Sum_probs=64.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcc--CCeeEEEEcc---CCCCCcEEEEEEcCHHHHHHHHHhcCCcccC----CceEEE
Q 020783 7 RTLYVGNLPGDTRMREVEDLFYKY--GPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFD----GYRLRV 77 (321)
Q Consensus 7 ~~l~V~nLp~~~te~~L~~~F~~~--G~I~~v~l~~---~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~----g~~i~V 77 (321)
+||-|.|||...|.++|.+++... |...-+.|+. ++.+.|||||-|.+++.|.+-.+.++|..+. .+...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 689999999999999999999654 5655566654 4667999999999999999999999998885 566777
Q ss_pred EEccCC
Q 020783 78 ELAHGG 83 (321)
Q Consensus 78 ~~a~~~ 83 (321)
.+|+-+
T Consensus 82 ~yAriQ 87 (97)
T PF04059_consen 82 SYARIQ 87 (97)
T ss_pred ehhHhh
Confidence 777643
No 132
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.34 E-value=1e-07 Score=85.28 Aligned_cols=63 Identities=17% Similarity=0.169 Sum_probs=54.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEccCCCCCcEEEEEEcCHHHHHHHHHhcCCcccC
Q 020783 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFD 71 (321)
Q Consensus 7 ~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~ 71 (321)
+||+|++|+..+...++.++|..+|+|....+.. +-...+|-|+|....+.+.|+. ++|..+.
T Consensus 152 Rt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~as-k~~s~~c~~sf~~qts~~halr-~~gre~k 214 (479)
T KOG4676|consen 152 RTREVQSLISAAILPESGESFERKGEVSYAHTAS-KSRSSSCSHSFRKQTSSKHALR-SHGRERK 214 (479)
T ss_pred hhhhhhcchhhhcchhhhhhhhhcchhhhhhhhc-cCCCcchhhhHhhhhhHHHHHH-hcchhhh
Confidence 6899999999999999999999999998877642 3336688899999999999999 7777665
No 133
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=98.28 E-value=3.2e-07 Score=78.10 Aligned_cols=64 Identities=22% Similarity=0.330 Sum_probs=53.7
Q ss_pred HHHHHHHh-ccCCeeEEEEcc--CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEccCCC
Q 020783 21 REVEDLFY-KYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGR 84 (321)
Q Consensus 21 ~~L~~~F~-~~G~I~~v~l~~--~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a~~~~ 84 (321)
++|...|+ +||+|+.++|-. ..+..|.+||.|..+++|++|++.|||..|.|++|..++.....
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pvT~ 149 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPVTD 149 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCcCc
Confidence 34555555 999999998833 34668999999999999999999999999999999999976544
No 134
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.25 E-value=4.7e-06 Score=69.88 Aligned_cols=77 Identities=16% Similarity=0.186 Sum_probs=65.8
Q ss_pred CCcEEEEeCCCCCCCHHHHHH----HHHhcCCcEEEEEEEcC-CCcEEEEEeCCHHHHHHHHHHhCCCcccCccceeEEE
Q 020783 108 SDYRVLVTGLPSSASWQDLKD----HMRRAGDVCFSQVFRDR-GGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 182 (321)
Q Consensus 108 ~~~~i~V~nl~~~~t~~~l~~----~f~~~G~i~~~~i~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~i~ 182 (321)
++.+|||.||+..+..++|+. +|++||+|..|...... -.|.|||.|.+.+.|-.|+..|+|..+-| ..++
T Consensus 8 pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFyg----K~mr 83 (221)
T KOG4206|consen 8 PNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYG----KPMR 83 (221)
T ss_pred CCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccC----chhh
Confidence 334999999999999999887 99999999999888654 45899999999999999999999999999 5565
Q ss_pred EEecCC
Q 020783 183 VREYDS 188 (321)
Q Consensus 183 v~~~~~ 188 (321)
+..++.
T Consensus 84 iqyA~s 89 (221)
T KOG4206|consen 84 IQYAKS 89 (221)
T ss_pred eecccC
Confidence 555433
No 135
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.21 E-value=6.1e-06 Score=73.12 Aligned_cols=77 Identities=17% Similarity=0.289 Sum_probs=64.3
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCCCcEEEEEeCCHHHHHHHHHH-hCCCcccCccceeEEEEE
Q 020783 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRK-LDRSEFRNAFSRSYVRVR 184 (321)
Q Consensus 106 ~~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~afV~f~~~~~a~~A~~~-l~g~~~~g~~~~~~i~v~ 184 (321)
-....+|||++|...+++.+|.++|.+||+|..+.+..... +|||+|.+.+.|+.|.++ ++...+.| .+|.+.
T Consensus 225 D~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~~--CAFv~ftTR~aAE~Aae~~~n~lvI~G----~Rl~i~ 298 (377)
T KOG0153|consen 225 DTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRKG--CAFVTFTTREAAEKAAEKSFNKLVING----FRLKIK 298 (377)
T ss_pred ccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecccc--cceeeehhhHHHHHHHHhhcceeeecc----eEEEEE
Confidence 34567999999999999999999999999999999987654 999999999999988765 56566677 777777
Q ss_pred ecCC
Q 020783 185 EYDS 188 (321)
Q Consensus 185 ~~~~ 188 (321)
..+.
T Consensus 299 Wg~~ 302 (377)
T KOG0153|consen 299 WGRP 302 (377)
T ss_pred eCCC
Confidence 5443
No 136
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.20 E-value=1.9e-05 Score=73.60 Aligned_cols=76 Identities=17% Similarity=0.255 Sum_probs=63.0
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEc----CCCcEEEEEeCCHHHHHHHHHHhCCCcccCccceeEEEEE
Q 020783 109 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRD----RGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVR 184 (321)
Q Consensus 109 ~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~i~v~ 184 (321)
..+|||.|||.++++.+|+++|..||.|....|..- ....||||+|++..+++.|+..- -..+++ .++.|+
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As-p~~ig~----~kl~Ve 362 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS-PLEIGG----RKLNVE 362 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcC-ccccCC----eeEEEE
Confidence 346999999999999999999999999999777653 22369999999999999999654 666677 788888
Q ss_pred ecCCC
Q 020783 185 EYDSR 189 (321)
Q Consensus 185 ~~~~~ 189 (321)
+.+..
T Consensus 363 ek~~~ 367 (419)
T KOG0116|consen 363 EKRPG 367 (419)
T ss_pred ecccc
Confidence 87654
No 137
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.18 E-value=5e-06 Score=80.60 Aligned_cols=71 Identities=17% Similarity=0.303 Sum_probs=63.3
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCCCcEEEEEeCCHHHHHHHHHHhCCCcccCccceeEEEEE
Q 020783 108 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVR 184 (321)
Q Consensus 108 ~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~i~v~ 184 (321)
..+||||++|+..+++.||..+|+.||+|..|.+..+. ++|||.+....+|.+|+.+|.+..+.+ ..|++.
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~R--~cAfI~M~~RqdA~kalqkl~n~kv~~----k~Iki~ 490 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPPR--GCAFIKMVRRQDAEKALQKLSNVKVAD----KTIKIA 490 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeeccCC--ceeEEEEeehhHHHHHHHHHhcccccc----eeeEEe
Confidence 46799999999999999999999999999999887664 499999999999999999999999888 555443
No 138
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.18 E-value=5.1e-06 Score=77.86 Aligned_cols=74 Identities=23% Similarity=0.358 Sum_probs=66.7
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCCC----cEEEEEeCCHHHHHHHHHHhCCCcccCccceeEEEEE
Q 020783 109 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVR 184 (321)
Q Consensus 109 ~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~----g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~i~v~ 184 (321)
+..++|.+|...+..-+|+.+|.+||+|+-..++.+... .|+||++.+.++|.++|..|+.+++.| +.|.|+
T Consensus 405 gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHG----rmISVE 480 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHG----RMISVE 480 (940)
T ss_pred ccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcc----eeeeee
Confidence 568999999999999999999999999999999987433 399999999999999999999999999 778886
Q ss_pred ec
Q 020783 185 EY 186 (321)
Q Consensus 185 ~~ 186 (321)
..
T Consensus 481 ka 482 (940)
T KOG4661|consen 481 KA 482 (940)
T ss_pred ec
Confidence 53
No 139
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.17 E-value=1e-05 Score=77.64 Aligned_cols=174 Identities=11% Similarity=0.004 Sum_probs=120.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcc---CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEcc
Q 020783 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (321)
Q Consensus 5 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~---~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a~ 81 (321)
+.+.+-+.+.+.+.+..|++++|... .|..+.|++ .+.-.|.++|+|....++++|++ -|...+-.+.+.+..+-
T Consensus 310 d~~y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~-rn~~~~~~R~~q~~P~g 387 (944)
T KOG4307|consen 310 DKYYNNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFT-RNPSDDVNRPFQTGPPG 387 (944)
T ss_pred hhheeeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHHh-cCchhhhhcceeecCCC
Confidence 45666778999999999999998654 455666633 23337999999999999999998 66777778888877654
Q ss_pred CCCCCCCC--------CCCCCCCCC-----------CCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEE-EEE
Q 020783 82 GGRRHSSS--------MDRYSSYSS-----------GGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCF-SQV 141 (321)
Q Consensus 82 ~~~~~~~~--------~~~~~~~~~-----------~~~~~~~~~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~-~~i 141 (321)
........ .......+. +.....+...+..|||..||..+++.++.++|.....|++ |.|
T Consensus 388 ~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~l 467 (944)
T KOG4307|consen 388 NLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIEL 467 (944)
T ss_pred ccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeEe
Confidence 33211110 000000000 0111233456789999999999999999999999888887 666
Q ss_pred EEcCC---CcEEEEEeCCHHHHHHHHHHhCCCcccCccceeEEEEE
Q 020783 142 FRDRG---GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVR 184 (321)
Q Consensus 142 ~~~~~---~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~i~v~ 184 (321)
...+. .+.|||.|..++++..|...-+...++. +.|+|.
T Consensus 468 t~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~----r~irv~ 509 (944)
T KOG4307|consen 468 TRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGH----RIIRVD 509 (944)
T ss_pred ccCCcccccchhhheeccccccchhhhcccccccCc----eEEEee
Confidence 55443 3599999999999988885544444443 677774
No 140
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.16 E-value=9.2e-06 Score=70.13 Aligned_cols=68 Identities=26% Similarity=0.317 Sum_probs=63.5
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCCC---cEEEEEeCCHHHHHHHHHHhCCCcccCcc
Q 020783 109 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG---MTGIVDYTSYDDMKYAIRKLDRSEFRNAF 176 (321)
Q Consensus 109 ~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~---g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 176 (321)
..+|+|.|||..++.+||+++|.+||.+..+.+..++.+ |.|-|.|...++|..|++.+++..++|..
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~ 153 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRP 153 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCce
Confidence 468999999999999999999999999999999998877 79999999999999999999999999944
No 141
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.07 E-value=3.4e-06 Score=75.21 Aligned_cols=80 Identities=29% Similarity=0.403 Sum_probs=71.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCeeE--------EEE---ccCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCc
Q 020783 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVD--------IDL---KIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGY 73 (321)
Q Consensus 5 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~--------v~l---~~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~ 73 (321)
..-+|||.+||..+++++|.++|.+||.|.. |+| ++|+.+|+-|.|.|.+...|+.|+..+++..+.+.
T Consensus 65 ~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~gn 144 (351)
T KOG1995|consen 65 DNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCGN 144 (351)
T ss_pred ccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccCC
Confidence 4578999999999999999999999998854 233 45789999999999999999999999999999999
Q ss_pred eEEEEEccCCC
Q 020783 74 RLRVELAHGGR 84 (321)
Q Consensus 74 ~i~V~~a~~~~ 84 (321)
.|+|.+|....
T Consensus 145 ~ikvs~a~~r~ 155 (351)
T KOG1995|consen 145 TIKVSLAERRT 155 (351)
T ss_pred Cchhhhhhhcc
Confidence 99999887554
No 142
>KOG4368 consensus Predicted RNA binding protein, contains SWAP, RPR and G-patch domains [General function prediction only]
Probab=98.03 E-value=1.4e-05 Score=75.17 Aligned_cols=17 Identities=12% Similarity=0.098 Sum_probs=10.6
Q ss_pred cccccchhhhhhccccC
Q 020783 277 RGHGELDIRNLMGCGAQ 293 (321)
Q Consensus 277 ~~~~~~~~~~~~~~~~~ 293 (321)
....|..+...|+|++.
T Consensus 686 e~NKGhQml~KMGWsG~ 702 (757)
T KOG4368|consen 686 EENKGHQMLVKMGWSGS 702 (757)
T ss_pred cccchhhhHhhcCcccC
Confidence 34556677777777553
No 143
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=98.02 E-value=3.2e-06 Score=71.88 Aligned_cols=69 Identities=16% Similarity=0.249 Sum_probs=59.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEccC-----------CCCC----cEEEEEEcCHHHHHHHHHhcCCccc
Q 020783 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIP-----------PRPP----GYAFLEFEDYRDAEDAIRGRDGYNF 70 (321)
Q Consensus 6 ~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~~-----------~~~k----g~aFVeF~~~e~A~~A~~~l~g~~i 70 (321)
.-.||++||||.+....|+++|++||+|-.|.|... +... .-|+|||.+...|+.....|||..|
T Consensus 74 ~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~I 153 (278)
T KOG3152|consen 74 TGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPI 153 (278)
T ss_pred ceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCcc
Confidence 468999999999999999999999999999999321 1111 2378999999999999999999999
Q ss_pred CCce
Q 020783 71 DGYR 74 (321)
Q Consensus 71 ~g~~ 74 (321)
+|+.
T Consensus 154 ggkk 157 (278)
T KOG3152|consen 154 GGKK 157 (278)
T ss_pred CCCC
Confidence 9875
No 144
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.01 E-value=1.4e-05 Score=60.47 Aligned_cols=70 Identities=16% Similarity=0.303 Sum_probs=43.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEccCCCCCcEEEEEEcCHHHHHHHHHhcCCc-----ccCCceEEEEE
Q 020783 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY-----NFDGYRLRVEL 79 (321)
Q Consensus 7 ~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~~~~~kg~aFVeF~~~e~A~~A~~~l~g~-----~i~g~~i~V~~ 79 (321)
+.|+|.+++..++-++|.++|++||.|..|.+.. .-..|||.|.+++.|++|+..+.-. .+.+..+.+..
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~---G~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~v 76 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSR---GDTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLEV 76 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--T---T-SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE-
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecC---CCCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEEE
Confidence 5789999999999999999999999999999863 2457999999999999999766433 44455444443
No 145
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=97.99 E-value=3.4e-06 Score=70.16 Aligned_cols=73 Identities=15% Similarity=0.109 Sum_probs=65.2
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCCC--cEEEEEeCCHHHHHHHHHHhCCCcccCcc
Q 020783 104 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG--MTGIVDYTSYDDMKYAIRKLDRSEFRNAF 176 (321)
Q Consensus 104 ~~~~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~--g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 176 (321)
+..+...+|+|+|+-..++++-|.++|-+.|+|..+.|..+... .||||+|.++-...-|++-+||..+.+..
T Consensus 4 aaae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~l~~~e 78 (267)
T KOG4454|consen 4 AAAEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDDLEEDE 78 (267)
T ss_pred CCcchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCceeeeecccccchhhhhhhcccchhccch
Confidence 34456779999999999999999999999999999999987544 49999999999999999999999998854
No 146
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=97.98 E-value=2.8e-05 Score=64.28 Aligned_cols=72 Identities=15% Similarity=0.159 Sum_probs=61.5
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhc-CCcEEEEEEEcCCC----cEEEEEeCCHHHHHHHHHHhCCCcccCccce
Q 020783 107 RSDYRVLVTGLPSSASWQDLKDHMRRA-GDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSR 178 (321)
Q Consensus 107 ~~~~~i~V~nl~~~~t~~~l~~~f~~~-G~i~~~~i~~~~~~----g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~ 178 (321)
....-++|..+|.-..+.++..+|.++ |.+..+.+..+..+ |||||+|++.+.|+-|.+.||++.+.++...
T Consensus 47 ~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~ 123 (214)
T KOG4208|consen 47 EIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLE 123 (214)
T ss_pred CCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheee
Confidence 344578999999999999999999998 77777888777543 5999999999999999999999999996633
No 147
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=97.91 E-value=4.6e-05 Score=67.64 Aligned_cols=77 Identities=25% Similarity=0.455 Sum_probs=67.1
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEE--------EEEEEcCCC---cEEEEEeCCHHHHHHHHHHhCCCcccCc
Q 020783 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCF--------SQVFRDRGG---MTGIVDYTSYDDMKYAIRKLDRSEFRNA 175 (321)
Q Consensus 107 ~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~--------~~i~~~~~~---g~afV~f~~~~~a~~A~~~l~g~~~~g~ 175 (321)
..++.|||.|||.++|.+++.++|.++|-|.. |.++.+..+ |-|.+.|...++..-|++.|++..+.|
T Consensus 132 ~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg- 210 (382)
T KOG1548|consen 132 KVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRG- 210 (382)
T ss_pred ccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccC-
Confidence 34667999999999999999999999998765 778877655 689999999999999999999999999
Q ss_pred cceeEEEEEecC
Q 020783 176 FSRSYVRVREYD 187 (321)
Q Consensus 176 ~~~~~i~v~~~~ 187 (321)
..|+|..+.
T Consensus 211 ---~~~rVerAk 219 (382)
T KOG1548|consen 211 ---KKLRVERAK 219 (382)
T ss_pred ---cEEEEehhh
Confidence 888887643
No 148
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=97.91 E-value=2.6e-05 Score=66.42 Aligned_cols=154 Identities=17% Similarity=0.198 Sum_probs=109.6
Q ss_pred eEEEcCCCCCCCHHH-H--HHHHhccCCeeEEEEc--cCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEccC
Q 020783 8 TLYVGNLPGDTRMRE-V--EDLFYKYGPIVDIDLK--IPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (321)
Q Consensus 8 ~l~V~nLp~~~te~~-L--~~~F~~~G~I~~v~l~--~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a~~ 82 (321)
.++++|+-..+..+- | ...|+.|-.....++. ..+.-.+++|+.|.....-.++...-++..+.-..|+. +..
T Consensus 98 ~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~--a~g 175 (290)
T KOG0226|consen 98 RPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRPQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRL--AAG 175 (290)
T ss_pred cccccccccccCCCCCCcchhhhccchhhhhhhhhhcCCCccCcccccCcchhhhhhhhccccccccccCcceee--ccc
Confidence 345666666665554 2 5566666554444442 23456899999999988888888777777766665433 222
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCCC----cEEEEEeCCHH
Q 020783 83 GRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYD 158 (321)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~----g~afV~f~~~~ 158 (321)
...... ....-.....+||-+.|..+++.+.|-..|.+|-......+..+..+ ||+||.|.+..
T Consensus 176 tswedP------------sl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pa 243 (290)
T KOG0226|consen 176 TSWEDP------------SLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPA 243 (290)
T ss_pred cccCCc------------ccccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHH
Confidence 211000 00111234568999999999999999999999998888888877543 69999999999
Q ss_pred HHHHHHHHhCCCcccCc
Q 020783 159 DMKYAIRKLDRSEFRNA 175 (321)
Q Consensus 159 ~a~~A~~~l~g~~~~g~ 175 (321)
++..|+.+|+|..++.+
T Consensus 244 d~~rAmrem~gkyVgsr 260 (290)
T KOG0226|consen 244 DYVRAMREMNGKYVGSR 260 (290)
T ss_pred HHHHHHHhhcccccccc
Confidence 99999999999999883
No 149
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.91 E-value=3.2e-05 Score=50.71 Aligned_cols=53 Identities=32% Similarity=0.548 Sum_probs=44.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEccCCCCCcEEEEEEcCHHHHHHHH
Q 020783 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAI 62 (321)
Q Consensus 6 ~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~~~~~kg~aFVeF~~~e~A~~A~ 62 (321)
++.|-|.+.+++..+ ++...|..||+|..+.+. ....+.||+|.+..+|++||
T Consensus 1 ~~wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~~---~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 1 STWISVSGFPPDLAE-EVLEHFASFGEIVDIYVP---ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred CcEEEEEeECchHHH-HHHHHHHhcCCEEEEEcC---CCCcEEEEEECCHHHHHhhC
Confidence 367889999988775 455688899999998886 23679999999999999985
No 150
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=97.90 E-value=0.00015 Score=53.70 Aligned_cols=67 Identities=15% Similarity=0.124 Sum_probs=57.1
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHhc--CCcEEEEEEEcC----CCcEEEEEeCCHHHHHHHHHHhCCCcccCcc
Q 020783 110 YRVLVTGLPSSASWQDLKDHMRRA--GDVCFSQVFRDR----GGMTGIVDYTSYDDMKYAIRKLDRSEFRNAF 176 (321)
Q Consensus 110 ~~i~V~nl~~~~t~~~l~~~f~~~--G~i~~~~i~~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 176 (321)
++|.|.|+|...+.++|.+++... |..-+++++.|- +.|||||.|.+++.|..-.+.++|..+..-.
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~ 74 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFN 74 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCC
Confidence 589999999999999999888764 666777887763 3489999999999999999999999997533
No 151
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.88 E-value=3.1e-05 Score=68.39 Aligned_cols=76 Identities=24% Similarity=0.389 Sum_probs=61.9
Q ss_pred CCeEEEcCCCCCCCHHHH------HHHHhccCCeeEEEEcc-CC--C-CCcE--EEEEEcCHHHHHHHHHhcCCcccCCc
Q 020783 6 SRTLYVGNLPGDTRMREV------EDLFYKYGPIVDIDLKI-PP--R-PPGY--AFLEFEDYRDAEDAIRGRDGYNFDGY 73 (321)
Q Consensus 6 ~~~l~V~nLp~~~te~~L------~~~F~~~G~I~~v~l~~-~~--~-~kg~--aFVeF~~~e~A~~A~~~l~g~~i~g~ 73 (321)
.+-+||-+||+.+-.+++ .++|.+||+|..|.+.. +. . -.+. .||+|.+.|+|..|++..+|..++|+
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 356899999999888873 68999999999999933 21 1 1122 39999999999999999999999999
Q ss_pred eEEEEEcc
Q 020783 74 RLRVELAH 81 (321)
Q Consensus 74 ~i~V~~a~ 81 (321)
.|+..|..
T Consensus 194 ~lkatYGT 201 (480)
T COG5175 194 VLKATYGT 201 (480)
T ss_pred eEeeecCc
Confidence 99988754
No 152
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.88 E-value=9.6e-06 Score=72.41 Aligned_cols=81 Identities=22% Similarity=0.358 Sum_probs=72.1
Q ss_pred CCCCCeEE-EcCCCCCCCHHHHHHHHhccCCeeEEEEcc---CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEE
Q 020783 3 SRSSRTLY-VGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVE 78 (321)
Q Consensus 3 ~~~~~~l~-V~nLp~~~te~~L~~~F~~~G~I~~v~l~~---~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~ 78 (321)
..++.++| |+||+.++++++|...|..+|.|..+.++. ++..+|||||+|.+...+..|+.. +...+.++++.++
T Consensus 181 ~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 259 (285)
T KOG4210|consen 181 SGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLE 259 (285)
T ss_pred cCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccc
Confidence 34556677 999999999999999999999999999953 678899999999999999999997 8999999999999
Q ss_pred EccCCC
Q 020783 79 LAHGGR 84 (321)
Q Consensus 79 ~a~~~~ 84 (321)
......
T Consensus 260 ~~~~~~ 265 (285)
T KOG4210|consen 260 EDEPRP 265 (285)
T ss_pred cCCCCc
Confidence 977654
No 153
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.81 E-value=3.9e-05 Score=57.99 Aligned_cols=59 Identities=22% Similarity=0.405 Sum_probs=40.0
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCCCcEEEEEeCCHHHHHHHHHHhCCC
Q 020783 110 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRS 170 (321)
Q Consensus 110 ~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 170 (321)
..|+|.+++..++.++|++.|.+||.|.+|.+..... .|+|.|.+++.|+.|+.++...
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~--~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDT--EGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-S--EEEEEESS---HHHHHHHHHHT
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCC--EEEEEECCcchHHHHHHHHHhc
Confidence 4688999999999999999999999999988876544 8999999999999999887655
No 154
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=97.80 E-value=2.4e-05 Score=73.47 Aligned_cols=69 Identities=19% Similarity=0.199 Sum_probs=60.2
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCCCcEEEEEeCCHHHHHHHHHHhCCCcccCcc
Q 020783 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAF 176 (321)
Q Consensus 107 ~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 176 (321)
.+..+|+|-|||..++.++|..+|..||+|..+..-... .+.+||+|.+..+|+.|++.|++.++.|+.
T Consensus 73 ~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~-~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~ 141 (549)
T KOG4660|consen 73 MNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNK-RGIVFVEFYDVRDAERALKALNRREIAGKR 141 (549)
T ss_pred CccceEEEEecCCcCCHHHHHHHHHhhcchhhhhccccc-CceEEEEEeehHhHHHHHHHHHHHHhhhhh
Confidence 345689999999999999999999999999996554443 358999999999999999999999999843
No 155
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.64 E-value=4.8e-05 Score=67.47 Aligned_cols=74 Identities=19% Similarity=0.178 Sum_probs=63.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccC--CeeEEEEc---cCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEc
Q 020783 7 RTLYVGNLPGDTRMREVEDLFYKYG--PIVDIDLK---IPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (321)
Q Consensus 7 ~~l~V~nLp~~~te~~L~~~F~~~G--~I~~v~l~---~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a 80 (321)
..+|||||-|.+|++||.+.+...| .|.++++. .+|.+||||+|...+..+.++.++.|....|.|+.-.|.-.
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~~ 159 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLSY 159 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeecc
Confidence 4689999999999999999998888 44555553 36899999999999999999999999999999987666543
No 156
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.60 E-value=0.00055 Score=48.60 Aligned_cols=70 Identities=14% Similarity=0.212 Sum_probs=46.4
Q ss_pred cEEEEeCCCCCCCHHHH----HHHHHhcC-CcEEEEEEEcCCCcEEEEEeCCHHHHHHHHHHhCCCcccCccceeEEEEE
Q 020783 110 YRVLVTGLPSSASWQDL----KDHMRRAG-DVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVR 184 (321)
Q Consensus 110 ~~i~V~nl~~~~t~~~l----~~~f~~~G-~i~~~~i~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~i~v~ 184 (321)
..|+|.|||.+.+...| +.++..+| .|..+. ++.|.|.|.+++.|..|.+.|+|..+.| ..|.+.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~------~~tAilrF~~~~~A~RA~KRmegEdVfG----~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS------GGTAILRFPNQEFAERAQKRMEGEDVFG----NKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE--------TT-EEEEESSHHHHHHHHHHHTT--SSS----S--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe------CCEEEEEeCCHHHHHHHHHhhccccccc----ceEEEE
Confidence 46999999999987655 55666665 565552 3589999999999999999999999999 778887
Q ss_pred ecCCC
Q 020783 185 EYDSR 189 (321)
Q Consensus 185 ~~~~~ 189 (321)
.....
T Consensus 73 ~~~~~ 77 (90)
T PF11608_consen 73 FSPKN 77 (90)
T ss_dssp SS--S
T ss_pred EcCCc
Confidence 66444
No 157
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.60 E-value=0.00029 Score=52.49 Aligned_cols=75 Identities=19% Similarity=0.267 Sum_probs=55.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEE-c---------cCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCce
Q 020783 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDL-K---------IPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYR 74 (321)
Q Consensus 5 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l-~---------~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~ 74 (321)
.++-|.|-+.|+. ....|.+.|++||.|.+..- . .........-|+|.++.+|.+||. .||..+.|..
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~ 82 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSL 82 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCE
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcE
Confidence 4677889999998 56788999999999988751 0 112347789999999999999999 9999998865
Q ss_pred -EEEEEcc
Q 020783 75 -LRVELAH 81 (321)
Q Consensus 75 -i~V~~a~ 81 (321)
+-|.+++
T Consensus 83 mvGV~~~~ 90 (100)
T PF05172_consen 83 MVGVKPCD 90 (100)
T ss_dssp EEEEEE-H
T ss_pred EEEEEEcH
Confidence 5577764
No 158
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.59 E-value=0.00013 Score=68.65 Aligned_cols=78 Identities=26% Similarity=0.386 Sum_probs=61.9
Q ss_pred CCeEEEcCCCCCCC------HHHHHHHHhccCCeeEEEEcc--CCCCCcEEEEEEcCHHHHHHHHHhcCCcccC-CceEE
Q 020783 6 SRTLYVGNLPGDTR------MREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFD-GYRLR 76 (321)
Q Consensus 6 ~~~l~V~nLp~~~t------e~~L~~~F~~~G~I~~v~l~~--~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~-g~~i~ 76 (321)
...|+|.|+|---. ..-|..+|+++|+|..+.++. .|..+||.|++|++..+|+.|++.|||..|+ .+...
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf~ 137 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTFF 137 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceEE
Confidence 46788999986422 223678899999999999974 4568999999999999999999999998886 55666
Q ss_pred EEEccCC
Q 020783 77 VELAHGG 83 (321)
Q Consensus 77 V~~a~~~ 83 (321)
|..-+.-
T Consensus 138 v~~f~d~ 144 (698)
T KOG2314|consen 138 VRLFKDF 144 (698)
T ss_pred eehhhhH
Confidence 6655433
No 159
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=97.55 E-value=0.00025 Score=68.48 Aligned_cols=74 Identities=16% Similarity=0.176 Sum_probs=64.8
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCC-------CcEEEEEeCCHHHHHHHHHHhCCCcccCcccee
Q 020783 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG-------GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRS 179 (321)
Q Consensus 107 ~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~-------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~ 179 (321)
+..+.+||+||++.++++.|...|..||+|..+.|++... ..++||-|.+..+|+.|++.|+|..+.+ .
T Consensus 172 P~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~----~ 247 (877)
T KOG0151|consen 172 PQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVME----Y 247 (877)
T ss_pred CcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeee----e
Confidence 4567899999999999999999999999999999997642 2499999999999999999999999887 4
Q ss_pred EEEEE
Q 020783 180 YVRVR 184 (321)
Q Consensus 180 ~i~v~ 184 (321)
.+++.
T Consensus 248 e~K~g 252 (877)
T KOG0151|consen 248 EMKLG 252 (877)
T ss_pred eeeec
Confidence 55443
No 160
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.53 E-value=0.00031 Score=67.73 Aligned_cols=76 Identities=21% Similarity=0.373 Sum_probs=65.3
Q ss_pred CCCC-eEEEcCCCCCCCHHHHHHHHhccCCeeE-EEE--ccCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEE
Q 020783 4 RSSR-TLYVGNLPGDTRMREVEDLFYKYGPIVD-IDL--KIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (321)
Q Consensus 4 ~~~~-~l~V~nLp~~~te~~L~~~F~~~G~I~~-v~l--~~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~ 79 (321)
++.+ .|-+.|+|++++-+||.+||.-|-.+-. |.+ ..+|.+.|-|.|-|++.++|..|...|++..|..+.|.+.+
T Consensus 864 ~pGp~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 864 SPGPRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred CCCCeEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 3445 7889999999999999999999975533 333 45789999999999999999999999999999999988764
No 161
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.43 E-value=0.00011 Score=67.14 Aligned_cols=65 Identities=26% Similarity=0.308 Sum_probs=55.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEccC--------CC--------CCcEEEEEEcCHHHHHHHHHhcCC
Q 020783 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIP--------PR--------PPGYAFLEFEDYRDAEDAIRGRDG 67 (321)
Q Consensus 4 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~~--------~~--------~kg~aFVeF~~~e~A~~A~~~l~g 67 (321)
=++++|.+.|||.+-.-+.|.+||+.+|.|+.|.|... +. .+-+|+|||++.+.|.+|.+.|+.
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 37899999999999888999999999999999999332 11 256799999999999999997755
Q ss_pred c
Q 020783 68 Y 68 (321)
Q Consensus 68 ~ 68 (321)
.
T Consensus 309 e 309 (484)
T KOG1855|consen 309 E 309 (484)
T ss_pred h
Confidence 3
No 162
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=97.43 E-value=0.00022 Score=61.68 Aligned_cols=74 Identities=20% Similarity=0.225 Sum_probs=64.1
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCCC----cEEEEEeCCHHHHHHHHHHhCCCcccCccceeEEEE
Q 020783 108 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 183 (321)
Q Consensus 108 ~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~----g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~i~v 183 (321)
....++|+|+...++.++++.+|+.||.+..+.+..+... +|+||+|.+.+.++.|+. ||+..+.| ..|.+
T Consensus 100 d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~----~~i~v 174 (231)
T KOG4209|consen 100 DAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPG----PAIEV 174 (231)
T ss_pred CCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCccccc----cccee
Confidence 4558999999999999999999999999998888877544 599999999999999997 99999999 55555
Q ss_pred Eec
Q 020783 184 REY 186 (321)
Q Consensus 184 ~~~ 186 (321)
...
T Consensus 175 t~~ 177 (231)
T KOG4209|consen 175 TLK 177 (231)
T ss_pred eee
Confidence 443
No 163
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=97.40 E-value=0.00015 Score=68.68 Aligned_cols=76 Identities=11% Similarity=0.217 Sum_probs=65.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHh-ccCCeeEEEEccCCCCCcEEEEEEcCHHHHHHHHHhcCCccc---CCceEEEEE
Q 020783 4 RSSRTLYVGNLPGDTRMREVEDLFY-KYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNF---DGYRLRVEL 79 (321)
Q Consensus 4 ~~~~~l~V~nLp~~~te~~L~~~F~-~~G~I~~v~l~~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i---~g~~i~V~~ 79 (321)
.+++.|||.||-.-+|.-+|+.|+. .+|.|.+.+|- +-|..|||.|.+.++|.+....|||..+ +++.|.+.|
T Consensus 442 ~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmD---kIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~adf 518 (718)
T KOG2416|consen 442 EPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMD---KIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIADF 518 (718)
T ss_pred CccceEeeecccccchHHHHHHHHhhccCchHHHHHH---HhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEeee
Confidence 5689999999999999999999999 66788887552 2277899999999999999999999888 577888888
Q ss_pred ccC
Q 020783 80 AHG 82 (321)
Q Consensus 80 a~~ 82 (321)
...
T Consensus 519 ~~~ 521 (718)
T KOG2416|consen 519 VRA 521 (718)
T ss_pred cch
Confidence 763
No 164
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.31 E-value=0.00067 Score=44.45 Aligned_cols=52 Identities=19% Similarity=0.289 Sum_probs=41.6
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCCCcEEEEEeCCHHHHHHHH
Q 020783 110 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAI 164 (321)
Q Consensus 110 ~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~afV~f~~~~~a~~A~ 164 (321)
+.|-|.|.+.... +++..+|..||+|..+.+.... ...+|+|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~-~~vl~~F~~fGeI~~~~~~~~~--~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLA-EEVLEHFASFGEIVDIYVPEST--NWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHH-HHHHHHHHhcCCEEEEEcCCCC--cEEEEEECCHHHHHhhC
Confidence 3678888887665 4555589999999998887333 39999999999999985
No 165
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.31 E-value=0.00045 Score=59.22 Aligned_cols=58 Identities=16% Similarity=0.198 Sum_probs=45.6
Q ss_pred HHHHHHHH-hcCCcEEEEEEEcCC---CcEEEEEeCCHHHHHHHHHHhCCCcccCccceeEE
Q 020783 124 QDLKDHMR-RAGDVCFSQVFRDRG---GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 181 (321)
Q Consensus 124 ~~l~~~f~-~~G~i~~~~i~~~~~---~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~i 181 (321)
++|...|. +||+|+.+.+-.+-. .|.++|.|...++|+.|+..||+..+.|+.+...+
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~ 144 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAEL 144 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeee
Confidence 34444555 899999987776633 36899999999999999999999999996544433
No 166
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.31 E-value=0.00067 Score=58.08 Aligned_cols=101 Identities=28% Similarity=0.249 Sum_probs=81.8
Q ss_pred HHHHHHHhcCCcccCCceEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCc
Q 020783 57 DAEDAIRGRDGYNFDGYRLRVELAHGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDV 136 (321)
Q Consensus 57 ~A~~A~~~l~g~~i~g~~i~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i 136 (321)
-|..|-..|++....|+.+.|-|+.. . .|+|.||+.-++-+.+...|..||+|
T Consensus 6 ~ae~ak~eLd~~~~~~~~lr~rfa~~-a--------------------------~l~V~nl~~~~sndll~~~f~~fg~~ 58 (275)
T KOG0115|consen 6 LAEIAKRELDGRFPKGRSLRVRFAMH-A--------------------------ELYVVNLMQGASNDLLEQAFRRFGPI 58 (275)
T ss_pred HHHHHHHhcCCCCCCCCceEEEeecc-c--------------------------eEEEEecchhhhhHHHHHhhhhcCcc
Confidence 35666777999999999999999876 3 69999999999999999999999999
Q ss_pred EEEEEEEcC---CCcEEEEEeCCHHHHHHHHHHhCCCcccCccceeEEEEE
Q 020783 137 CFSQVFRDR---GGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVR 184 (321)
Q Consensus 137 ~~~~i~~~~---~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~i~v~ 184 (321)
....++.|. .++-++|+|...-.|.+|.......-+.+.......-|.
T Consensus 59 e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~Ve 109 (275)
T KOG0115|consen 59 ERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVE 109 (275)
T ss_pred chheeeecccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCC
Confidence 997666653 336899999999999999988876666664443444343
No 167
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.23 E-value=0.00044 Score=68.61 Aligned_cols=83 Identities=28% Similarity=0.415 Sum_probs=73.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEccCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCC--ceEEEEEc
Q 020783 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDG--YRLRVELA 80 (321)
Q Consensus 3 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g--~~i~V~~a 80 (321)
+.+++.+||++|.+++....|...|..||.|..|.+- +...||||.|++...|+.|++.|-|..|+| +.|.|.|+
T Consensus 452 st~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~---hgq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla 528 (975)
T KOG0112|consen 452 STPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYR---HGQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLA 528 (975)
T ss_pred cccceeeccCCCCCCChHHHHHHHhhccCcceeeecc---cCCcceeeecccCccchhhHHHHhcCcCCCCCcccccccc
Confidence 3577899999999999999999999999999998885 347899999999999999999999999975 67999999
Q ss_pred cCCCCCCC
Q 020783 81 HGGRRHSS 88 (321)
Q Consensus 81 ~~~~~~~~ 88 (321)
......+.
T Consensus 529 ~~~~~~Pq 536 (975)
T KOG0112|consen 529 SPPGATPQ 536 (975)
T ss_pred cCCCCChh
Confidence 87765544
No 168
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.19 E-value=0.0016 Score=51.51 Aligned_cols=54 Identities=26% Similarity=0.447 Sum_probs=46.3
Q ss_pred HHHHHHhccCCeeEEEEccCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEcc
Q 020783 22 EVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (321)
Q Consensus 22 ~L~~~F~~~G~I~~v~l~~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a~ 81 (321)
+|.+.|..||+|.=+++. .+.-+|+|.+-++|-+|+. |+|..+.|+.|+|.+-.
T Consensus 52 ~ll~~~~~~GevvLvRfv-----~~~mwVTF~dg~sALaals-~dg~~v~g~~l~i~LKt 105 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFV-----GDTMWVTFRDGQSALAALS-LDGIQVNGRTLKIRLKT 105 (146)
T ss_dssp HHHHHHHCCS-ECEEEEE-----TTCEEEEESSCHHHHHHHH-GCCSEETTEEEEEEE--
T ss_pred HHHHHHHhCCceEEEEEe-----CCeEEEEECccHHHHHHHc-cCCcEECCEEEEEEeCC
Confidence 688899999999888776 3567999999999999999 99999999999998844
No 169
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.03 E-value=0.00064 Score=67.16 Aligned_cols=81 Identities=17% Similarity=0.208 Sum_probs=72.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEc--cCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEccCCC
Q 020783 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLK--IPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGR 84 (321)
Q Consensus 7 ~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~--~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a~~~~ 84 (321)
..|+|.|.|+..|.++|+.++.++|.++++.+. ..|+++|-|||.|.++.+|..++...++..+..+.+.|..+++..
T Consensus 737 ~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp~~ 816 (881)
T KOG0128|consen 737 ISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNPER 816 (881)
T ss_pred hhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCCcc
Confidence 468999999999999999999999999999873 478999999999999999999999999999998888888877654
Q ss_pred CCC
Q 020783 85 RHS 87 (321)
Q Consensus 85 ~~~ 87 (321)
..+
T Consensus 817 ~K~ 819 (881)
T KOG0128|consen 817 DKK 819 (881)
T ss_pred ccc
Confidence 333
No 170
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.97 E-value=0.0021 Score=56.06 Aligned_cols=62 Identities=23% Similarity=0.281 Sum_probs=50.4
Q ss_pred HHHHHHHHhccCCeeEEEEccCC----CCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEcc
Q 020783 20 MREVEDLFYKYGPIVDIDLKIPP----RPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (321)
Q Consensus 20 e~~L~~~F~~~G~I~~v~l~~~~----~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a~ 81 (321)
++++.+-.++||.|..|.|.... +-.--.||+|...++|.+|+-.|||.+|+|+.+...|-+
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 34678888999999999884421 113347999999999999999999999999998877754
No 171
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.77 E-value=0.0073 Score=42.92 Aligned_cols=54 Identities=15% Similarity=0.267 Sum_probs=42.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEccCCCCCcEEEEEEcCHHHHHHHHHhcC
Q 020783 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRD 66 (321)
Q Consensus 7 ~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~~~~~kg~aFVeF~~~e~A~~A~~~l~ 66 (321)
...+|+ +|..+...||.++|+.||.|.--.|. -.-|||...+.+.|..|+..+.
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I~VsWi~-----dTSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQIYVSWIN-----DTSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCEEEEEEC-----TTEEEEEECCCHHHHHHHHHHT
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcEEEEEEc-----CCcEEEEeecHHHHHHHHHHhc
Confidence 455666 99999999999999999998766665 3479999999999999998775
No 172
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=96.76 E-value=0.0046 Score=58.07 Aligned_cols=61 Identities=21% Similarity=0.377 Sum_probs=55.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHh-ccCCeeEEEEccC---CCCCcEEEEEEcCHHHHHHHHH
Q 020783 3 SRSSRTLYVGNLPGDTRMREVEDLFY-KYGPIVDIDLKIP---PRPPGYAFLEFEDYRDAEDAIR 63 (321)
Q Consensus 3 ~~~~~~l~V~nLp~~~te~~L~~~F~-~~G~I~~v~l~~~---~~~kg~aFVeF~~~e~A~~A~~ 63 (321)
-.+.+|||||+||--+|.++|..+|+ -||.|..+-|-++ +=++|-|=|+|.+..+=.+||.
T Consensus 367 lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIs 431 (520)
T KOG0129|consen 367 IDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAIS 431 (520)
T ss_pred cCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHh
Confidence 46889999999999999999999999 8999999999555 3468999999999999999986
No 173
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.70 E-value=0.0012 Score=56.63 Aligned_cols=68 Identities=15% Similarity=0.141 Sum_probs=60.0
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCCC---------c-------EEEEEeCCHHHHHHHHHHhCCCcc
Q 020783 109 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG---------M-------TGIVDYTSYDDMKYAIRKLDRSEF 172 (321)
Q Consensus 109 ~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~---------g-------~afV~f~~~~~a~~A~~~l~g~~~ 172 (321)
...||+.+||+.++...|+++|..||.|-.|.+...... + -|+|+|.+...|......||+..+
T Consensus 74 ~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~I 153 (278)
T KOG3152|consen 74 TGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPI 153 (278)
T ss_pred ceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCcc
Confidence 358999999999999999999999999999999865321 1 689999999999999999999999
Q ss_pred cCcc
Q 020783 173 RNAF 176 (321)
Q Consensus 173 ~g~~ 176 (321)
+|+.
T Consensus 154 ggkk 157 (278)
T KOG3152|consen 154 GGKK 157 (278)
T ss_pred CCCC
Confidence 9953
No 174
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.61 E-value=0.0062 Score=57.76 Aligned_cols=66 Identities=26% Similarity=0.315 Sum_probs=54.7
Q ss_pred CcEEEEeCCCCCCC------HHHHHHHHHhcCCcEEEEEEEcCCC---cEEEEEeCCHHHHHHHHHHhCCCcccC
Q 020783 109 DYRVLVTGLPSSAS------WQDLKDHMRRAGDVCFSQVFRDRGG---MTGIVDYTSYDDMKYAIRKLDRSEFRN 174 (321)
Q Consensus 109 ~~~i~V~nl~~~~t------~~~l~~~f~~~G~i~~~~i~~~~~~---g~afV~f~~~~~a~~A~~~l~g~~~~g 174 (321)
...|+|.|+|---. ...|..+|+++|+++.+.++.++.+ ||.|++|.++.+|+.|++.|||+.++-
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldk 132 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDK 132 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecc
Confidence 45788888876422 2356688999999999999977554 699999999999999999999999875
No 175
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.51 E-value=0.0094 Score=52.13 Aligned_cols=54 Identities=15% Similarity=0.164 Sum_probs=47.2
Q ss_pred HHHHHHHHHhcCCcEEEEEEEcCCCc-----EEEEEeCCHHHHHHHHHHhCCCcccCcc
Q 020783 123 WQDLKDHMRRAGDVCFSQVFRDRGGM-----TGIVDYTSYDDMKYAIRKLDRSEFRNAF 176 (321)
Q Consensus 123 ~~~l~~~f~~~G~i~~~~i~~~~~~g-----~afV~f~~~~~a~~A~~~l~g~~~~g~~ 176 (321)
++++.+.|.+||.|..|.|+..++-. -.||+|+..++|.+|+-.|||..|+|+.
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~ 358 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRV 358 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceeccee
Confidence 45788999999999999998875532 7899999999999999999999999943
No 176
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.38 E-value=0.011 Score=44.00 Aligned_cols=65 Identities=18% Similarity=0.188 Sum_probs=46.9
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEE-----------EEEcCCCcEEEEEeCCHHHHHHHHHHhCCCcccCc
Q 020783 109 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQ-----------VFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNA 175 (321)
Q Consensus 109 ~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~-----------i~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 175 (321)
..-|.|-|+|+. ....+.++|++||.|.... ......+....|+|.++.+|.+|+ ..||..+.|.
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL-~~NG~i~~g~ 81 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRAL-QKNGTIFSGS 81 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHH-TTTTEEETTC
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHH-HhCCeEEcCc
Confidence 345888888888 5678889999999998764 011223348999999999999999 6799999884
No 177
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=96.28 E-value=0.037 Score=42.10 Aligned_cols=68 Identities=18% Similarity=0.152 Sum_probs=50.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccC-CeeEEEEccCCCCCc-EEEEEEcCHHHHHHHHHhcCCcccC
Q 020783 4 RSSRTLYVGNLPGDTRMREVEDLFYKYG-PIVDIDLKIPPRPPG-YAFLEFEDYRDAEDAIRGRDGYNFD 71 (321)
Q Consensus 4 ~~~~~l~V~nLp~~~te~~L~~~F~~~G-~I~~v~l~~~~~~kg-~aFVeF~~~e~A~~A~~~l~g~~i~ 71 (321)
.....+.+...|+.++-++|..+.+.+- .|..++|..++.+.. .+.|+|.+.++|.+-+..+||..+.
T Consensus 11 ~~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 11 RRSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred CCceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 3445555555566666667776666664 677888877776544 5788999999999999999998885
No 178
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.21 E-value=0.015 Score=51.91 Aligned_cols=71 Identities=17% Similarity=0.228 Sum_probs=57.0
Q ss_pred CCCCCcEEEEeCCCCCCCHHH----H--HHHHHhcCCcEEEEEEEcCC---C--c--EEEEEeCCHHHHHHHHHHhCCCc
Q 020783 105 SRRSDYRVLVTGLPSSASWQD----L--KDHMRRAGDVCFSQVFRDRG---G--M--TGIVDYTSYDDMKYAIRKLDRSE 171 (321)
Q Consensus 105 ~~~~~~~i~V~nl~~~~t~~~----l--~~~f~~~G~i~~~~i~~~~~---~--g--~afV~f~~~~~a~~A~~~l~g~~ 171 (321)
......-+||-+|++.+..++ | .++|.+||.|..|.+.+... . + -.||.|.+.++|..++.+.+|..
T Consensus 110 RVvQKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~ 189 (480)
T COG5175 110 RVVQKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSL 189 (480)
T ss_pred eeeecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhcccc
Confidence 344556799999999886665 2 47999999999998876531 1 2 24899999999999999999999
Q ss_pred ccCc
Q 020783 172 FRNA 175 (321)
Q Consensus 172 ~~g~ 175 (321)
++|+
T Consensus 190 ~DGr 193 (480)
T COG5175 190 LDGR 193 (480)
T ss_pred ccCc
Confidence 9993
No 179
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=96.14 E-value=0.01 Score=53.43 Aligned_cols=69 Identities=20% Similarity=0.274 Sum_probs=58.9
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEE--------EEEEEcC----CCcEEEEEeCCHHHHHHHHHHhCCCccc
Q 020783 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCF--------SQVFRDR----GGMTGIVDYTSYDDMKYAIRKLDRSEFR 173 (321)
Q Consensus 106 ~~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~--------~~i~~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~ 173 (321)
.....+|||.++|..+++.+|.++|.++|.|.. |+|..+. .++-|.|.|++...|+.|+.-++++.+.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 345678999999999999999999999987654 4555553 3469999999999999999999999999
Q ss_pred C
Q 020783 174 N 174 (321)
Q Consensus 174 g 174 (321)
+
T Consensus 143 g 143 (351)
T KOG1995|consen 143 G 143 (351)
T ss_pred C
Confidence 9
No 180
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.13 E-value=0.0064 Score=55.83 Aligned_cols=64 Identities=14% Similarity=0.262 Sum_probs=55.0
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEc---CC--------------CcEEEEEeCCHHHHHHHHHHhCC
Q 020783 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRD---RG--------------GMTGIVDYTSYDDMKYAIRKLDR 169 (321)
Q Consensus 107 ~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~---~~--------------~g~afV~f~~~~~a~~A~~~l~g 169 (321)
-+..+|.+.|||.+-.-+.|.++|..+|.|..|.|... +. .-+|+|+|+..+.|.+|.+.|+.
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 35679999999999999999999999999999999876 21 12899999999999999987754
Q ss_pred C
Q 020783 170 S 170 (321)
Q Consensus 170 ~ 170 (321)
.
T Consensus 309 e 309 (484)
T KOG1855|consen 309 E 309 (484)
T ss_pred h
Confidence 3
No 181
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=96.05 E-value=0.048 Score=42.85 Aligned_cols=73 Identities=19% Similarity=0.225 Sum_probs=56.4
Q ss_pred CCCCeEEEcCCCCCCCH----HHHHHHHhccCCeeEEEEccCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEE
Q 020783 4 RSSRTLYVGNLPGDTRM----REVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (321)
Q Consensus 4 ~~~~~l~V~nLp~~~te----~~L~~~F~~~G~I~~v~l~~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~ 79 (321)
-|-.||.|.=|..++.. ..+...++.||+|++|.+- ++.-|.|.|.+..+|.+|+..++. ...|..+.+.|
T Consensus 84 pPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c----GrqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCsW 158 (166)
T PF15023_consen 84 PPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC----GRQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCSW 158 (166)
T ss_pred CCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec----CCceEEEEehhhHHHHHHHHhhcC-CCCCceEEeec
Confidence 45567888766666443 3466777999999999885 367899999999999999998876 56677788777
Q ss_pred cc
Q 020783 80 AH 81 (321)
Q Consensus 80 a~ 81 (321)
-.
T Consensus 159 qq 160 (166)
T PF15023_consen 159 QQ 160 (166)
T ss_pred cc
Confidence 43
No 182
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=95.91 E-value=0.025 Score=48.66 Aligned_cols=74 Identities=27% Similarity=0.328 Sum_probs=58.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcc--CCCCCcEEEEEEcCHHHHHHHHHhcCCcc----cCCceEEEEEc
Q 020783 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYN----FDGYRLRVELA 80 (321)
Q Consensus 7 ~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~--~~~~kg~aFVeF~~~e~A~~A~~~l~g~~----i~g~~i~V~~a 80 (321)
..|||.||..-++.+.|.+-|+.||+|....++. .+++.+-++|+|...-.|.+|+..+.-.- ..+++.-|...
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP~ 111 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEPM 111 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCChh
Confidence 6799999999999999999999999997755533 46778899999999999999998773322 24555555543
No 183
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=95.59 E-value=0.064 Score=51.05 Aligned_cols=97 Identities=13% Similarity=0.162 Sum_probs=68.9
Q ss_pred HHHHHHHHhcCCcccCCceEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHh--c
Q 020783 56 RDAEDAIRGRDGYNFDGYRLRVELAHGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRR--A 133 (321)
Q Consensus 56 e~A~~A~~~l~g~~i~g~~i~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~nl~~~~t~~~l~~~f~~--~ 133 (321)
+=..+++....+..++.+-.+|..... -+.|.+..||..+..++++.+|+- +
T Consensus 148 dLI~Evlresp~VqvDekgekVrp~~k--------------------------RcIvilREIpettp~e~Vk~lf~~enc 201 (684)
T KOG2591|consen 148 DLIVEVLRESPNVQVDEKGEKVRPNHK--------------------------RCIVILREIPETTPIEVVKALFKGENC 201 (684)
T ss_pred HHHHHHHhcCCCceeccCccccccCcc--------------------------eeEEEEeecCCCChHHHHHHHhccCCC
Confidence 334556666666666666666544332 247889999999999999999985 6
Q ss_pred CCcEEEEEEEcCCCcEEEEEeCCHHHHHHHHHHhCC--CcccCccceeEE
Q 020783 134 GDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDR--SEFRNAFSRSYV 181 (321)
Q Consensus 134 G~i~~~~i~~~~~~g~afV~f~~~~~a~~A~~~l~g--~~~~g~~~~~~i 181 (321)
-++..|.+..+. -+||+|++..||+.|.+.|.. ++|.|+.+..+|
T Consensus 202 Pk~iscefa~N~---nWyITfesd~DAQqAykylreevk~fqgKpImARI 248 (684)
T KOG2591|consen 202 PKVISCEFAHND---NWYITFESDTDAQQAYKYLREEVKTFQGKPIMARI 248 (684)
T ss_pred CCceeeeeeecC---ceEEEeecchhHHHHHHHHHHHHHhhcCcchhhhh
Confidence 678888887776 499999999999999876643 234444333333
No 184
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=95.44 E-value=0.0086 Score=57.92 Aligned_cols=71 Identities=20% Similarity=0.183 Sum_probs=64.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEccCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEcc
Q 020783 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (321)
Q Consensus 5 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a~ 81 (321)
+.-++||+||...+..+-+..+...||-|..++... |||++|.....+..|+..++-..++|..+.+....
T Consensus 39 ~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~d~ 109 (668)
T KOG2253|consen 39 PRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENVDE 109 (668)
T ss_pred CCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh------hcccchhhHHHHHHHHHHhcccCCCcchhhccchh
Confidence 567999999999999999999999999998887752 99999999999999999999999999998877653
No 185
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=95.35 E-value=0.0061 Score=54.44 Aligned_cols=75 Identities=29% Similarity=0.446 Sum_probs=58.7
Q ss_pred CeEEEcCCCCCCCHHHH---HHHHhccCCeeEEEEccCC------CCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEE
Q 020783 7 RTLYVGNLPGDTRMREV---EDLFYKYGPIVDIDLKIPP------RPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRV 77 (321)
Q Consensus 7 ~~l~V~nLp~~~te~~L---~~~F~~~G~I~~v~l~~~~------~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V 77 (321)
+-+||-+|+..+..+.+ .+.|.+||.|..|.+..+. ...--++|+|...++|..||...+|..++|+.|+.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 45788889888766665 4688999999999885422 11223899999999999999999999999999776
Q ss_pred EEcc
Q 020783 78 ELAH 81 (321)
Q Consensus 78 ~~a~ 81 (321)
.+..
T Consensus 158 ~~gt 161 (327)
T KOG2068|consen 158 SLGT 161 (327)
T ss_pred hhCC
Confidence 6644
No 186
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=95.22 E-value=0.012 Score=54.74 Aligned_cols=77 Identities=14% Similarity=0.222 Sum_probs=63.1
Q ss_pred CCCCeEEEcCCCCC-CCHHHHHHHHhccCCeeEEEEccCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEccC
Q 020783 4 RSSRTLYVGNLPGD-TRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (321)
Q Consensus 4 ~~~~~l~V~nLp~~-~te~~L~~~F~~~G~I~~v~l~~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a~~ 82 (321)
.+.+.|-+-.+|+. -|-++|...|.+||+|..|.+-.. .--|.|+|.+..+|-+|.. .++..|+++.|+|.|.++
T Consensus 370 ~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~---~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 370 VDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS---SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNP 445 (526)
T ss_pred cccchhhhhccCCCCchHhhhhhhhhhcCccccccccCc---hhhheeeeeccccccchhc-cccceecCceeEEEEecC
Confidence 34556666666666 456789999999999999999543 4568999999999988887 899999999999999886
Q ss_pred CC
Q 020783 83 GR 84 (321)
Q Consensus 83 ~~ 84 (321)
..
T Consensus 446 s~ 447 (526)
T KOG2135|consen 446 SP 447 (526)
T ss_pred Cc
Confidence 44
No 187
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=95.10 E-value=0.025 Score=47.00 Aligned_cols=82 Identities=16% Similarity=0.133 Sum_probs=50.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhc-cCCe---eEEE--Ecc---CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCc
Q 020783 3 SRSSRTLYVGNLPGDTRMREVEDLFYK-YGPI---VDID--LKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGY 73 (321)
Q Consensus 3 ~~~~~~l~V~nLp~~~te~~L~~~F~~-~G~I---~~v~--l~~---~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~ 73 (321)
......|.|.+|||++|++++.+.+.. ++.- ..+. ... ....-.-|||.|.+.+++..-...++|..+.+.
T Consensus 4 ~~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~ 83 (176)
T PF03467_consen 4 EKEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDS 83 (176)
T ss_dssp -----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-T
T ss_pred cccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECC
Confidence 456679999999999999999997776 6655 3333 111 112245699999999999999999999776432
Q ss_pred -----eEEEEEccCCC
Q 020783 74 -----RLRVELAHGGR 84 (321)
Q Consensus 74 -----~i~V~~a~~~~ 84 (321)
.-.|++|.-.+
T Consensus 84 kg~~~~~~VE~Apyqk 99 (176)
T PF03467_consen 84 KGNEYPAVVEFAPYQK 99 (176)
T ss_dssp TS-EEEEEEEE-SS--
T ss_pred CCCCcceeEEEcchhc
Confidence 45677766543
No 188
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=95.02 E-value=0.19 Score=33.90 Aligned_cols=53 Identities=15% Similarity=0.239 Sum_probs=41.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcc----CCeeEEEEccCCCCCcEEEEEEcCHHHHHHHHHhc
Q 020783 7 RTLYVGNLPGDTRMREVEDLFYKY----GPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGR 65 (321)
Q Consensus 7 ~~l~V~nLp~~~te~~L~~~F~~~----G~I~~v~l~~~~~~kg~aFVeF~~~e~A~~A~~~l 65 (321)
..|+|.|+ .+++.++|..+|..| + ...|....+ .-|=|.|.+.+.|.+||..|
T Consensus 6 eavhirGv-d~lsT~dI~~y~~~y~~~~~-~~~IEWIdD----tScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGV-DELSTDDIKAYFSEYFDEEG-PFRIEWIDD----TSCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcC-CCCCHHHHHHHHHHhcccCC-CceEEEecC----CcEEEEECCHHHHHHHHHcC
Confidence 56899998 468999999999999 4 345555432 24789999999999999864
No 189
>KOG0835 consensus Cyclin L [General function prediction only]
Probab=94.75 E-value=0.041 Score=49.14 Aligned_cols=20 Identities=15% Similarity=0.034 Sum_probs=14.2
Q ss_pred CCcEEEEEEcCHHHHHHHHH
Q 020783 44 PPGYAFLEFEDYRDAEDAIR 63 (321)
Q Consensus 44 ~kg~aFVeF~~~e~A~~A~~ 63 (321)
...-.||-|..+.-|.+++.
T Consensus 172 lRT~v~vry~pe~iACaciy 191 (367)
T KOG0835|consen 172 LRTDVFVRYSPESIACACIY 191 (367)
T ss_pred cccceeeecCHHHHHHHHHH
Confidence 34567888887777777765
No 190
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=94.64 E-value=0.21 Score=39.71 Aligned_cols=53 Identities=19% Similarity=0.271 Sum_probs=43.7
Q ss_pred HHHHHHHhcCCcEEEEEEEcCCCcEEEEEeCCHHHHHHHHHHhCCCcccCccceeEEEEEec
Q 020783 125 DLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREY 186 (321)
Q Consensus 125 ~l~~~f~~~G~i~~~~i~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~i~v~~~ 186 (321)
+|-+.|..||++.-+++..+ .-+|+|.+-+.|-+|+ .++|.++.| ..+.+...
T Consensus 52 ~ll~~~~~~GevvLvRfv~~----~mwVTF~dg~sALaal-s~dg~~v~g----~~l~i~LK 104 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFVGD----TMWVTFRDGQSALAAL-SLDGIQVNG----RTLKIRLK 104 (146)
T ss_dssp HHHHHHHCCS-ECEEEEETT----CEEEEESSCHHHHHHH-HGCCSEETT----EEEEEEE-
T ss_pred HHHHHHHhCCceEEEEEeCC----eEEEEECccHHHHHHH-ccCCcEECC----EEEEEEeC
Confidence 67788889999998888776 6899999999999999 799999999 66666544
No 191
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=94.63 E-value=0.12 Score=43.04 Aligned_cols=63 Identities=29% Similarity=0.355 Sum_probs=46.3
Q ss_pred CHHHHHHHHhccCCeeEEEEccCCCCCcEEEEEEcCHHHHHHHHHhcC--CcccCCceEEEEEccCCC
Q 020783 19 RMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRD--GYNFDGYRLRVELAHGGR 84 (321)
Q Consensus 19 te~~L~~~F~~~G~I~~v~l~~~~~~kg~aFVeF~~~e~A~~A~~~l~--g~~i~g~~i~V~~a~~~~ 84 (321)
..+.|+++|..|+.+..+.+.. +-+=..|.|.+.++|.+|...|+ +..+.|..++|.++....
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~---sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~~ 72 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLK---SFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPTP 72 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEET---TTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----SS
T ss_pred hHHHHHHHHHhcCCceEEEEcC---CCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccccc
Confidence 4578999999999988887752 23457999999999999999999 999999999999985443
No 192
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=94.50 E-value=0.18 Score=35.41 Aligned_cols=58 Identities=24% Similarity=0.367 Sum_probs=37.0
Q ss_pred CCCHHHHHHHHhccC-----CeeEEEEccCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEc
Q 020783 17 DTRMREVEDLFYKYG-----PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (321)
Q Consensus 17 ~~te~~L~~~F~~~G-----~I~~v~l~~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a 80 (321)
.++..+|..++..-+ .|-.|.+. ..|+||+-... .|..++..|++..+.|+.|.|+.|
T Consensus 12 g~~~~~iv~~i~~~~gi~~~~IG~I~I~-----~~~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 12 GLTPRDIVGAICNEAGIPGRDIGRIDIF-----DNFSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp T--HHHHHHHHHTCTTB-GGGEEEEEE------SS-EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred CCCHHHHHHHHHhccCCCHHhEEEEEEe-----eeEEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 488899999998775 45567776 56999998776 778899999999999999999875
No 193
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=94.11 E-value=0.27 Score=33.66 Aligned_cols=55 Identities=25% Similarity=0.467 Sum_probs=44.8
Q ss_pred CCCHHHHHHHHhccCCeeEEEEccCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEE
Q 020783 17 DTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRV 77 (321)
Q Consensus 17 ~~te~~L~~~F~~~G~I~~v~l~~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V 77 (321)
.++-++|+..+.+|+- ..|..-. .|| ||.|.+.++|++++...+|..+.+-.|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~-~~I~~d~----tGf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-DRIRDDR----TGF-YIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCc-ceEEecC----CEE-EEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 4788999999999973 4554433 565 99999999999999999999888777665
No 194
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=94.07 E-value=0.45 Score=32.06 Aligned_cols=54 Identities=17% Similarity=0.113 Sum_probs=43.1
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHhc---CCcEEEEEEEcCCCcEEEEEeCCHHHHHHHHHHh
Q 020783 110 YRVLVTGLPSSASWQDLKDHMRRA---GDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKL 167 (321)
Q Consensus 110 ~~i~V~nl~~~~t~~~l~~~f~~~---G~i~~~~i~~~~~~g~afV~f~~~~~a~~A~~~l 167 (321)
..|+|.|+. +++.++|+.+|..| .....+....+. .|-|-|.+.+.|.+|+..|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt---ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT---SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC---cEEEEECCHHHHHHHHHcC
Confidence 379999984 58889999999999 234466666665 6889999999999999754
No 195
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=93.81 E-value=0.093 Score=50.00 Aligned_cols=68 Identities=18% Similarity=0.293 Sum_probs=52.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhc--cCCeeEEEEccCCCCCcEEEEEEcCHHHHHHHHHhcCC--cccCCceE
Q 020783 4 RSSRTLYVGNLPGDTRMREVEDLFYK--YGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDG--YNFDGYRL 75 (321)
Q Consensus 4 ~~~~~l~V~nLp~~~te~~L~~~F~~--~G~I~~v~l~~~~~~kg~aFVeF~~~e~A~~A~~~l~g--~~i~g~~i 75 (321)
+.-|.|.|.-||.++..|+++.||.. |-++.+|.+..+ ..=||+|++..||++|++.|.- ..|-|+.|
T Consensus 173 ~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N----~nWyITfesd~DAQqAykylreevk~fqgKpI 244 (684)
T KOG2591|consen 173 HKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHN----DNWYITFESDTDAQQAYKYLREEVKTFQGKPI 244 (684)
T ss_pred cceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeec----CceEEEeecchhHHHHHHHHHHHHHhhcCcch
Confidence 34578999999999999999999964 778899888532 2359999999999999976643 34445544
No 196
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=93.65 E-value=0.2 Score=46.60 Aligned_cols=68 Identities=22% Similarity=0.333 Sum_probs=59.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccC-CeeEEEEccCCCCCcE-EEEEEcCHHHHHHHHHhcCCcccCC
Q 020783 5 SSRTLYVGNLPGDTRMREVEDLFYKYG-PIVDIDLKIPPRPPGY-AFLEFEDYRDAEDAIRGRDGYNFDG 72 (321)
Q Consensus 5 ~~~~l~V~nLp~~~te~~L~~~F~~~G-~I~~v~l~~~~~~kg~-aFVeF~~~e~A~~A~~~l~g~~i~g 72 (321)
+++.|+|=.+|..+|-.||..|...|- .|.++++..++.+..| +.|.|.+.++|...+..+||..|..
T Consensus 73 ~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 73 SSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 378899999999999999999998774 7889999888876655 7899999999999999999988853
No 197
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=93.64 E-value=0.15 Score=45.01 Aligned_cols=72 Identities=18% Similarity=0.251 Sum_probs=55.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEccCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCce-EEEEEccCC
Q 020783 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYR-LRVELAHGG 83 (321)
Q Consensus 7 ~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~-i~V~~a~~~ 83 (321)
.=|-|-++|+.-. .-|..+|++||+|...... ....+-.|.|.+.-+|.+||. .||+.|+|-. |-|+.+..+
T Consensus 198 ~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~---~ngNwMhirYssr~~A~KALs-kng~ii~g~vmiGVkpCtDk 270 (350)
T KOG4285|consen 198 TWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTP---SNGNWMHIRYSSRTHAQKALS-KNGTIIDGDVMIGVKPCTDK 270 (350)
T ss_pred ceEEEeccCccch-hHHHHHHHhhCeeeeeecC---CCCceEEEEecchhHHHHhhh-hcCeeeccceEEeeeecCCH
Confidence 4455667776543 4678899999999887654 335689999999999999999 8999998875 566665543
No 198
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.16 E-value=0.47 Score=45.66 Aligned_cols=77 Identities=21% Similarity=0.357 Sum_probs=60.5
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHHHHhcc----CCeeEEEEccC-------------CC-------------C-------
Q 020783 3 SRSSRTLYVGNLPGD-TRMREVEDLFYKY----GPIVDIDLKIP-------------PR-------------P------- 44 (321)
Q Consensus 3 ~~~~~~l~V~nLp~~-~te~~L~~~F~~~----G~I~~v~l~~~-------------~~-------------~------- 44 (321)
+.++++|-|.|+.|+ +...+|..+|+.| |.|.+|.|..+ |- +
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 357889999999997 8999999999877 69999988211 11 0
Q ss_pred -----------------CcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEE
Q 020783 45 -----------------PGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (321)
Q Consensus 45 -----------------kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~ 79 (321)
--||.|+|.+.+.|.+.+..++|..|..--..+.+
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DL 302 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDL 302 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeee
Confidence 14799999999999999999999999654444433
No 199
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=92.93 E-value=0.29 Score=34.89 Aligned_cols=54 Identities=17% Similarity=0.235 Sum_probs=41.6
Q ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCCCcEEEEEeCCHHHHHHHHHHhCC
Q 020783 111 RVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDR 169 (321)
Q Consensus 111 ~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~afV~f~~~~~a~~A~~~l~g 169 (321)
..+|. +|..+...||.++|..||.|.--.|... .|||.....+.|..++..++.
T Consensus 11 VFhlt-FPkeWK~~DI~qlFspfG~I~VsWi~dT----SAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 11 VFHLT-FPKEWKTSDIYQLFSPFGQIYVSWINDT----SAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp EEEEE---TT--HHHHHHHCCCCCCEEEEEECTT----EEEEEECCCHHHHHHHHHHTT
T ss_pred EEEEe-CchHhhhhhHHHHhccCCcEEEEEEcCC----cEEEEeecHHHHHHHHHHhcc
Confidence 44455 9999999999999999999876665544 899999999999999988764
No 200
>KOG0835 consensus Cyclin L [General function prediction only]
Probab=92.30 E-value=0.26 Score=44.16 Aligned_cols=12 Identities=0% Similarity=0.125 Sum_probs=7.3
Q ss_pred CCCHHHHHHHHH
Q 020783 120 SASWQDLKDHMR 131 (321)
Q Consensus 120 ~~t~~~l~~~f~ 131 (321)
++++++|.+++.
T Consensus 212 d~~k~eid~ic~ 223 (367)
T KOG0835|consen 212 DTTKREIDEICY 223 (367)
T ss_pred CCcHHHHHHHHH
Confidence 456666666554
No 201
>PF08648 DUF1777: Protein of unknown function (DUF1777); InterPro: IPR013957 This entry shows eukaryotic proteins of unknown function. Some of the proteins are putative nucleic acid binding proteins.
Probab=92.29 E-value=0.54 Score=39.13 Aligned_cols=6 Identities=50% Similarity=1.110 Sum_probs=2.9
Q ss_pred hhcccc
Q 020783 287 LMGCGA 292 (321)
Q Consensus 287 ~~~~~~ 292 (321)
+|++++
T Consensus 132 ~MGf~g 137 (180)
T PF08648_consen 132 MMGFGG 137 (180)
T ss_pred hhcccc
Confidence 555433
No 202
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=91.92 E-value=0.38 Score=39.90 Aligned_cols=68 Identities=12% Similarity=0.198 Sum_probs=47.7
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHh-cCCc---EEEEEEEcCC--C----cEEEEEeCCHHHHHHHHHHhCCCcccCcc
Q 020783 109 DYRVLVTGLPSSASWQDLKDHMRR-AGDV---CFSQVFRDRG--G----MTGIVDYTSYDDMKYAIRKLDRSEFRNAF 176 (321)
Q Consensus 109 ~~~i~V~nl~~~~t~~~l~~~f~~-~G~i---~~~~i~~~~~--~----g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 176 (321)
...|.|.+||+.+|++++.+.+.. ++.. .++.-..... . .-|||.|.+.+++..-...++|..|.+..
T Consensus 7 ~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 7 GTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp --EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred CceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 458999999999999999997776 6655 3333222211 1 28999999999999999999998886644
No 203
>PF06495 Transformer: Fruit fly transformer protein; InterPro: IPR010519 This family consists of transformer proteins from several Drosophila species and also from Ceratitis capitata (Mediterranean fruit fly). The transformer locus (tra) produces an RNA processing protein that alternatively splices the doublesex pre-mRNA in the sex determination hierarchy of Drosophila melanogaster [].; GO: 0006397 mRNA processing, 0046660 female sex differentiation, 0005634 nucleus
Probab=91.63 E-value=0.19 Score=40.69 Aligned_cols=10 Identities=30% Similarity=0.441 Sum_probs=4.4
Q ss_pred cccCCCCcce
Q 020783 290 CGAQMPATHL 299 (321)
Q Consensus 290 ~~~~~~~~~~ 299 (321)
+||+.|.-+|
T Consensus 130 y~~~~~~~~~ 139 (182)
T PF06495_consen 130 YGWPPPAPQF 139 (182)
T ss_pred cCCCCccccc
Confidence 4444444443
No 204
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=91.57 E-value=0.47 Score=34.42 Aligned_cols=71 Identities=23% Similarity=0.341 Sum_probs=44.7
Q ss_pred EEEEEcCHHHHHHHHHhcCC--cccCCceEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcEEEEeCCCCCCCHHH
Q 020783 48 AFLEFEDYRDAEDAIRGRDG--YNFDGYRLRVELAHGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQD 125 (321)
Q Consensus 48 aFVeF~~~e~A~~A~~~l~g--~~i~g~~i~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~nl~~~~t~~~ 125 (321)
|.|+|.++.-|+..++ +.. ..+++..+.|....-....... ..--...+..+|.|.|||...+++.
T Consensus 1 AlITF~e~~VA~~i~~-~~~~~v~l~~~~~~V~v~P~~~~~~~k-----------~qv~~~vs~rtVlvsgip~~l~ee~ 68 (88)
T PF07292_consen 1 ALITFEEEGVAQRILK-KKKHPVPLEDCCVRVKVSPVTLGHLQK-----------FQVFSGVSKRTVLVSGIPDVLDEEE 68 (88)
T ss_pred CEEEeCcHHHHHHHHh-CCEEEEEECCEEEEEEEEeEecCCceE-----------EEEEEcccCCEEEEeCCCCCCChhh
Confidence 6899999999999987 333 3345556555543322211100 0001123556899999999999999
Q ss_pred HHHHH
Q 020783 126 LKDHM 130 (321)
Q Consensus 126 l~~~f 130 (321)
|++..
T Consensus 69 l~D~L 73 (88)
T PF07292_consen 69 LRDKL 73 (88)
T ss_pred heeeE
Confidence 98653
No 205
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=91.30 E-value=5.1 Score=35.59 Aligned_cols=164 Identities=12% Similarity=0.149 Sum_probs=98.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEccCC----------CCCcEEEEEEcCHHHHHHHHH----hcCC--cc
Q 020783 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPP----------RPPGYAFLEFEDYRDAEDAIR----GRDG--YN 69 (321)
Q Consensus 6 ~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~~~----------~~kg~aFVeF~~~e~A~~A~~----~l~g--~~ 69 (321)
++.|.+.|+..+++--.+...|-+||+|++|++.... ....-..+-|-+.+.|-.-+. .|.- ..
T Consensus 15 TRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~~ 94 (309)
T PF10567_consen 15 TRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKTK 94 (309)
T ss_pred eHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHHh
Confidence 5678889999999999999999999999999995432 335678999999998876542 2221 44
Q ss_pred cCCceEEEEEccCCCCCCCC-CCCCCCC---CCC--CCCCCCCCCCcEEEEeCCCCCCCHHHH-HHHH---HhcC----C
Q 020783 70 FDGYRLRVELAHGGRRHSSS-MDRYSSY---SSG--GSRGVSRRSDYRVLVTGLPSSASWQDL-KDHM---RRAG----D 135 (321)
Q Consensus 70 i~g~~i~V~~a~~~~~~~~~-~~~~~~~---~~~--~~~~~~~~~~~~i~V~nl~~~~t~~~l-~~~f---~~~G----~ 135 (321)
+....|.|.|..-.-..... .+....+ -.. .-.-......+.|.|. +...+..+++ .+.+ ..-+ -
T Consensus 95 L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~Ie-F~~~~~~~dl~~~kL~fL~~~~n~RYV 173 (309)
T PF10567_consen 95 LKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIE-FKDPVDKDDLIEKKLPFLKNSNNKRYV 173 (309)
T ss_pred cCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEE-ecCccchhHHHHHhhhhhccCCCceEE
Confidence 56677887776532111000 0101111 000 0011223344556665 3344434433 3322 2223 2
Q ss_pred cEEEEEEEcCC------CcEEEEEeCCHHHHHHHHHHhCCC
Q 020783 136 VCFSQVFRDRG------GMTGIVDYTSYDDMKYAIRKLDRS 170 (321)
Q Consensus 136 i~~~~i~~~~~------~g~afV~f~~~~~a~~A~~~l~g~ 170 (321)
++.+.++.... ..||.+.|-+...|.+.++.+...
T Consensus 174 lEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk~~ 214 (309)
T PF10567_consen 174 LESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLKSN 214 (309)
T ss_pred EEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHHhc
Confidence 45566664422 249999999999999999877643
No 206
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=90.88 E-value=0.18 Score=48.57 Aligned_cols=68 Identities=15% Similarity=0.157 Sum_probs=55.1
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHh-cCCcEEEEEEEcCCCcEEEEEeCCHHHHHHHHHHhCCCcccC
Q 020783 105 SRRSDYRVLVTGLPSSASWQDLKDHMRR-AGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRN 174 (321)
Q Consensus 105 ~~~~~~~i~V~nl~~~~t~~~l~~~f~~-~G~i~~~~i~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 174 (321)
.....+.|+|.||-.-.|.-.|++++.+ .|.|...+|-.- +..|||.|.+.++|......|||-.+..
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDkI--KShCyV~yss~eEA~atr~AlhnV~WP~ 508 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDKI--KSHCYVSYSSVEEAAATREALHNVQWPP 508 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHHHHHHh--hcceeEecccHHHHHHHHHHHhccccCC
Confidence 3445779999999999999999999995 556666644332 2389999999999999999999988854
No 207
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=90.34 E-value=0.2 Score=50.12 Aligned_cols=75 Identities=17% Similarity=0.124 Sum_probs=61.3
Q ss_pred EEcCCCCCCCHHHHHHHHhccCCeeEEEEccCCCCCcEEEEEEcCHHHHHHHHHhcCCccc--CCceEEEEEccCCCCCC
Q 020783 10 YVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNF--DGYRLRVELAHGGRRHS 87 (321)
Q Consensus 10 ~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i--~g~~i~V~~a~~~~~~~ 87 (321)
++-|.+-..+-.-|..+|..||.|.+.+...+ -..|.|+|...+.|..|+..|+|..+ .|-+.+|-+|+......
T Consensus 302 ~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~---~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~~~~e 378 (1007)
T KOG4574|consen 302 SLENNAVNLTSSSLATLCSDYGSVASAWTLRD---LNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTLPMYE 378 (1007)
T ss_pred hhhcccccchHHHHHHHHHhhcchhhheeccc---ccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccccccc
Confidence 44455556788889999999999999888532 45799999999999999999999877 58889999988665443
No 208
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=89.12 E-value=0.019 Score=52.75 Aligned_cols=78 Identities=15% Similarity=0.296 Sum_probs=65.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEccCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEccCC
Q 020783 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (321)
Q Consensus 6 ~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a~~~ 83 (321)
++.+.|.|||+...++-|-.|+.+||.|+.|....+.--....-|+|...+.+..|+..|||..+....++|.|-...
T Consensus 80 srk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~etavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~YiPde 157 (584)
T KOG2193|consen 80 SRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSETAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYIPDE 157 (584)
T ss_pred hhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHHHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccCchh
Confidence 567899999999999999999999999999988444333444557899999999999999999999999998885533
No 209
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=88.56 E-value=5.7 Score=30.15 Aligned_cols=63 Identities=10% Similarity=0.073 Sum_probs=45.7
Q ss_pred EEEeCCCCCCCHHHHHHHHHhcC-CcEEEEEEEcCC--CcEEEEEeCCHHHHHHHHHHhCCCcccC
Q 020783 112 VLVTGLPSSASWQDLKDHMRRAG-DVCFSQVFRDRG--GMTGIVDYTSYDDMKYAIRKLDRSEFRN 174 (321)
Q Consensus 112 i~V~nl~~~~t~~~l~~~f~~~G-~i~~~~i~~~~~--~g~afV~f~~~~~a~~A~~~l~g~~~~g 174 (321)
+.+...|..++.++|..+...+- .|..+.|..+.. ...+.++|.+.++|.+-...+||+.+..
T Consensus 16 ~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 16 CCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred EEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 33444444555666766655554 566788887743 3488899999999999999999999976
No 210
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=87.85 E-value=1.5 Score=38.90 Aligned_cols=67 Identities=18% Similarity=0.218 Sum_probs=50.4
Q ss_pred EEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCCCcEEEEEeCCHHHHHHHHHHhCCCcccCccceeEEEEEe
Q 020783 112 VLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 185 (321)
Q Consensus 112 i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~i~v~~ 185 (321)
|-|-++|+... .-|..+|.+||+|...... .++.+-+|.|.+.-+|++|+ ..||+.++|. .-|-|..
T Consensus 200 VTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~--~ngNwMhirYssr~~A~KAL-skng~ii~g~---vmiGVkp 266 (350)
T KOG4285|consen 200 VTVFGFPPGQV-SIVLNLFSRCGEVVKHVTP--SNGNWMHIRYSSRTHAQKAL-SKNGTIIDGD---VMIGVKP 266 (350)
T ss_pred EEEeccCccch-hHHHHHHHhhCeeeeeecC--CCCceEEEEecchhHHHHhh-hhcCeeeccc---eEEeeee
Confidence 55556655433 4577899999999887766 44559999999999999999 5789988885 3445555
No 211
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=85.75 E-value=1 Score=35.99 Aligned_cols=120 Identities=17% Similarity=0.130 Sum_probs=76.4
Q ss_pred EEEcCCC--CCCCHHHHHHHHhc-cCCeeEEEEccCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEccCCCC
Q 020783 9 LYVGNLP--GDTRMREVEDLFYK-YGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRR 85 (321)
Q Consensus 9 l~V~nLp--~~~te~~L~~~F~~-~G~I~~v~l~~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a~~~~~ 85 (321)
..||.+. .+.+-..|.+.+.+ ++....+.+.. ...++..++|.+++++.+++. .....++|..|.++...+...
T Consensus 18 ~lVg~~l~~~~~~~~~l~~~l~~~W~~~~~~~i~~--l~~~~fl~~F~~~~d~~~vl~-~~p~~~~~~~~~l~~W~~~~~ 94 (153)
T PF14111_consen 18 CLVGRVLSPKPISLSALEQELAKIWKLKGGVKIRD--LGDNLFLFQFESEEDRQRVLK-GGPWNFNGHFLILQRWSPDFN 94 (153)
T ss_pred EEEEEECCCCCCCHHHHHHHHHHHhCCCCcEEEEE--eCCCeEEEEEEeccceeEEEe-cccccccccchhhhhhccccc
Confidence 4455552 34566666666654 24333444422 126899999999999999988 455566777777766553321
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCcEEEEeCCCCC-CCHHHHHHHHHhcCCcEEEEEEEcC
Q 020783 86 HSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSS-ASWQDLKDHMRRAGDVCFSQVFRDR 145 (321)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~nl~~~-~t~~~l~~~f~~~G~i~~~~i~~~~ 145 (321)
.... .......=|.|.|||.. .+++-+..+.+..|++..++.....
T Consensus 95 ~~~~--------------~~~~~~vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t~~ 141 (153)
T PF14111_consen 95 PSEV--------------KFEHIPVWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDENTLK 141 (153)
T ss_pred cccc--------------ceeccchhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCCCC
Confidence 1110 00011223677899998 5778889999999999988876553
No 212
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=84.70 E-value=4 Score=32.32 Aligned_cols=63 Identities=8% Similarity=0.090 Sum_probs=46.4
Q ss_pred CCCcEEEEeCCCCCC----CHHHHHHHHHhcCCcEEEEEEEcCCCcEEEEEeCCHHHHHHHHHHhCCCcc
Q 020783 107 RSDYRVLVTGLPSSA----SWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEF 172 (321)
Q Consensus 107 ~~~~~i~V~nl~~~~----t~~~l~~~f~~~G~i~~~~i~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~ 172 (321)
++..+|.|.=|..++ +...+-..++.||+|..+.+.... .|.|.|.+..+|-.|+..++....
T Consensus 84 pPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGrq---savVvF~d~~SAC~Av~Af~s~~p 150 (166)
T PF15023_consen 84 PPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGRQ---SAVVVFKDITSACKAVSAFQSRAP 150 (166)
T ss_pred CCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecCCc---eEEEEehhhHHHHHHHHhhcCCCC
Confidence 344577776555544 334455667889999999876443 799999999999999998887443
No 213
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=83.73 E-value=5.2 Score=37.63 Aligned_cols=66 Identities=11% Similarity=0.178 Sum_probs=57.7
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcC-CcEEEEEEEcC--CCcEEEEEeCCHHHHHHHHHHhCCCcccC
Q 020783 109 DYRVLVTGLPSSASWQDLKDHMRRAG-DVCFSQVFRDR--GGMTGIVDYTSYDDMKYAIRKLDRSEFRN 174 (321)
Q Consensus 109 ~~~i~V~nl~~~~t~~~l~~~f~~~G-~i~~~~i~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g 174 (321)
...|.|-.+|..++-.||-.|+..+- .|..+.++.+. +...+.|+|.+.++|..-.+.+||..|..
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 67899999999999999999998765 67778888864 33588999999999999999999999976
No 214
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=83.42 E-value=4.4 Score=33.81 Aligned_cols=59 Identities=14% Similarity=0.057 Sum_probs=43.0
Q ss_pred CHHHHHHHHHhcCCcEEEEEEEcCCCcEEEEEeCCHHHHHHHHHHhC--CCcccCccceeEEEEEec
Q 020783 122 SWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLD--RSEFRNAFSRSYVRVREY 186 (321)
Q Consensus 122 t~~~l~~~f~~~G~i~~~~i~~~~~~g~afV~f~~~~~a~~A~~~l~--g~~~~g~~~~~~i~v~~~ 186 (321)
..+.|+++|..|+.+..+.....=. -..|.|.+.++|..|...|+ +..+.| ..+++-..
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sFr--Ri~v~f~~~~~A~~~r~~l~~~~~~~~g----~~l~~yf~ 68 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSFR--RIRVVFESPESAQRARQLLHWDGTSFNG----KRLRVYFG 68 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTTT--EEEEE-SSTTHHHHHHHTST--TSEETT----EE-EEE--
T ss_pred hHHHHHHHHHhcCCceEEEEcCCCC--EEEEEeCCHHHHHHHHHHhcccccccCC----CceEEEEc
Confidence 4578999999999988876665432 68899999999999999999 899999 55555443
No 215
>KOG2888 consensus Putative RNA binding protein [General function prediction only]
Probab=81.91 E-value=0.82 Score=41.00 Aligned_cols=9 Identities=0% Similarity=0.379 Sum_probs=4.0
Q ss_pred HHHHHHHhc
Q 020783 125 DLKDHMRRA 133 (321)
Q Consensus 125 ~l~~~f~~~ 133 (321)
+|.+.|+++
T Consensus 228 qId~~ie~r 236 (453)
T KOG2888|consen 228 QIDEKIEER 236 (453)
T ss_pred HHHHHHHhc
Confidence 444444443
No 216
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=81.55 E-value=0.77 Score=41.35 Aligned_cols=69 Identities=17% Similarity=0.168 Sum_probs=54.7
Q ss_pred CCcEEEEeCCCCCCCHHH-HH--HHHHhcCCcEEEEEEEcCC-------CcEEEEEeCCHHHHHHHHHHhCCCcccCcc
Q 020783 108 SDYRVLVTGLPSSASWQD-LK--DHMRRAGDVCFSQVFRDRG-------GMTGIVDYTSYDDMKYAIRKLDRSEFRNAF 176 (321)
Q Consensus 108 ~~~~i~V~nl~~~~t~~~-l~--~~f~~~G~i~~~~i~~~~~-------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 176 (321)
...-+||-+|+.....+. |+ +.|.+||.|..+.+..+.. .--++|+|+..++|..|+...+|..++|+.
T Consensus 76 qknlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~ 154 (327)
T KOG2068|consen 76 QKNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRA 154 (327)
T ss_pred hhhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhh
Confidence 345688888988875554 43 5889999999999888651 127899999999999999999999998843
No 217
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=79.95 E-value=9.6 Score=26.49 Aligned_cols=58 Identities=14% Similarity=0.239 Sum_probs=35.4
Q ss_pred CCCCHHHHHHHHHhcC-----CcEEEEEEEcCCCcEEEEEeCCHHHHHHHHHHhCCCcccCccceeEEEEEe
Q 020783 119 SSASWQDLKDHMRRAG-----DVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 185 (321)
Q Consensus 119 ~~~t~~~l~~~f~~~G-----~i~~~~i~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~i~v~~ 185 (321)
..++..+|..++...+ .|-.+.+..+ |+||+-. .+.|..++..|++..+.| ..+.++.
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~----~S~vev~-~~~a~~v~~~l~~~~~~g----k~v~ve~ 73 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFDN----FSFVEVP-EEVAEKVLEALNGKKIKG----KKVRVER 73 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-SS-----EEEEE--TT-HHHHHHHHTT--SSS--------EEE
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEeee----EEEEEEC-HHHHHHHHHHhcCCCCCC----eeEEEEE
Confidence 3578888888888765 4556777766 8999865 457899999999999999 6666543
No 218
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=76.95 E-value=2.9 Score=37.93 Aligned_cols=69 Identities=16% Similarity=0.137 Sum_probs=55.3
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCC--cEEEEEEEcC----CCcEEEEEeCCHHHHHHHHHHhCCCcccCcc
Q 020783 108 SDYRVLVTGLPSSASWQDLKDHMRRAGD--VCFSQVFRDR----GGMTGIVDYTSYDDMKYAIRKLDRSEFRNAF 176 (321)
Q Consensus 108 ~~~~i~V~nl~~~~t~~~l~~~f~~~G~--i~~~~i~~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 176 (321)
...++||+||-.-+|.+||.+.....|- +..++++.+. .+|||.|-..+....++.++.|-.+++.|..
T Consensus 79 rk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~ 153 (498)
T KOG4849|consen 79 RKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQS 153 (498)
T ss_pred ceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCC
Confidence 3468999999999999999999887773 4444444443 2469999999999999999999999998843
No 219
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=76.74 E-value=1.8 Score=40.76 Aligned_cols=70 Identities=14% Similarity=0.210 Sum_probs=53.6
Q ss_pred EEEeCCCCCC-CHHHHHHHHHhcCCcEEEEEEEcCCCcEEEEEeCCHHHHHHHHHHhCCCcccCccceeEEEEEecCC
Q 020783 112 VLVTGLPSSA-SWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDS 188 (321)
Q Consensus 112 i~V~nl~~~~-t~~~l~~~f~~~G~i~~~~i~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~i~v~~~~~ 188 (321)
+.+.-.|... +..+|..+|.+||.|..|.+-... -.|.|+|.+..+|-+|. ..++..+++ +.|.+.....
T Consensus 375 l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~--~~a~vTF~t~aeag~a~-~s~~avlnn----r~iKl~whnp 445 (526)
T KOG2135|consen 375 LALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSS--LHAVVTFKTRAEAGEAY-ASHGAVLNN----RFIKLFWHNP 445 (526)
T ss_pred hhhhccCCCCchHhhhhhhhhhcCccccccccCch--hhheeeeeccccccchh-ccccceecC----ceeEEEEecC
Confidence 3333344443 567899999999999999887763 27999999999997776 688999999 6677766544
No 220
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=76.11 E-value=2.4 Score=41.67 Aligned_cols=67 Identities=15% Similarity=0.033 Sum_probs=58.6
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCCCcEEEEEeCCHHHHHHHHHHhCCCcccCc
Q 020783 104 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNA 175 (321)
Q Consensus 104 ~~~~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 175 (321)
.+.++..++||+|+-..+..+.+..+...+|.|..+.... |||.+|....-+..|+..++...++|.
T Consensus 35 ~~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~-----fgf~~f~~~~~~~ra~r~~t~~~~~~~ 101 (668)
T KOG2253|consen 35 QPLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK-----FGFCEFLKHIGDLRASRLLTELNIDDQ 101 (668)
T ss_pred cCCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh-----hcccchhhHHHHHHHHHHhcccCCCcc
Confidence 3456678999999999999999999999999998876655 899999999999999999888888774
No 221
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=73.55 E-value=12 Score=26.88 Aligned_cols=56 Identities=11% Similarity=0.162 Sum_probs=42.2
Q ss_pred eEEEcCCCCCCCHHHHHHHHhcc-C-CeeEEEEccCCCCCcEEEEEEcCHHHHHHHHH
Q 020783 8 TLYVGNLPGDTRMREVEDLFYKY-G-PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIR 63 (321)
Q Consensus 8 ~l~V~nLp~~~te~~L~~~F~~~-G-~I~~v~l~~~~~~kg~aFVeF~~~e~A~~A~~ 63 (321)
.-|+-.+++.++..+|.+.++.+ | +|..|.........-=|||.+...+.|.....
T Consensus 22 n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~KKA~V~L~~g~~A~~va~ 79 (84)
T PRK14548 22 NKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGEKKAYVKLAEEYDAEEIAS 79 (84)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCcEEEEEEeCCCCcHHHHHH
Confidence 45666678999999999999874 5 66777664444344569999999998887654
No 222
>PF14893 PNMA: PNMA
Probab=73.20 E-value=4.2 Score=37.22 Aligned_cols=56 Identities=21% Similarity=0.257 Sum_probs=37.0
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhc----cCCeeEEEEc-cCCCCCcEEEEEEcCHH
Q 020783 1 MSSRSSRTLYVGNLPGDTRMREVEDLFYK----YGPIVDIDLK-IPPRPPGYAFLEFEDYR 56 (321)
Q Consensus 1 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~----~G~I~~v~l~-~~~~~kg~aFVeF~~~e 56 (321)
|+-++.+.|.|.+||.++++++|.+.+.. .|...-+.-. .......-|+|+|...-
T Consensus 13 m~~~~~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~~~~aalve~~e~~ 73 (331)
T PF14893_consen 13 MGVDPQRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREENAKAALVEFAEDV 73 (331)
T ss_pred cCcChhhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhcccceeeeeccccc
Confidence 67788899999999999999999888753 3432221111 11222456778877643
No 223
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=72.80 E-value=3.8 Score=33.72 Aligned_cols=75 Identities=19% Similarity=0.233 Sum_probs=55.9
Q ss_pred CeEEEcCCCCCCC-----HHHHHHHHhccCCeeEEEEccCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCc-eEEEEEc
Q 020783 7 RTLYVGNLPGDTR-----MREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGY-RLRVELA 80 (321)
Q Consensus 7 ~~l~V~nLp~~~t-----e~~L~~~F~~~G~I~~v~l~~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~-~i~V~~a 80 (321)
+++.+.+|+..+- ......+|.+|-+.....+. ++.+..-|-|.+++.|..|...+++..+.|+ .++..++
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~l---rsfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfa 87 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLL---RSFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFA 87 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHH---HhhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEc
Confidence 4578888877632 22356677777776666555 2355667899999999999999999999988 7888887
Q ss_pred cCCC
Q 020783 81 HGGR 84 (321)
Q Consensus 81 ~~~~ 84 (321)
...-
T Consensus 88 Q~~~ 91 (193)
T KOG4019|consen 88 QPGH 91 (193)
T ss_pred cCCC
Confidence 7544
No 224
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=71.16 E-value=16 Score=25.77 Aligned_cols=56 Identities=13% Similarity=0.160 Sum_probs=41.2
Q ss_pred eEEEcCCCCCCCHHHHHHHHhcc-C-CeeEEEEccCCCCCcEEEEEEcCHHHHHHHHH
Q 020783 8 TLYVGNLPGDTRMREVEDLFYKY-G-PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIR 63 (321)
Q Consensus 8 ~l~V~nLp~~~te~~L~~~F~~~-G-~I~~v~l~~~~~~kg~aFVeF~~~e~A~~A~~ 63 (321)
.-|+-.+++.++..+|.+.++++ | +|..|........--=|||.+...+.|...-.
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~KKA~VtL~~g~~a~~va~ 72 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGEKKAYVKLAEEYAAEEIAS 72 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCceEEEEEECCCCcHHHHHH
Confidence 45677789999999999999874 5 66666664333334459999998888877544
No 225
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=69.55 E-value=11 Score=25.36 Aligned_cols=19 Identities=21% Similarity=0.455 Sum_probs=17.0
Q ss_pred HHHHHHHhccCCeeEEEEc
Q 020783 21 REVEDLFYKYGPIVDIDLK 39 (321)
Q Consensus 21 ~~L~~~F~~~G~I~~v~l~ 39 (321)
++|+++|+..|.|.-+.+.
T Consensus 9 ~~iR~~fs~lG~I~vLYvn 27 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVN 27 (62)
T ss_pred HHHHHHHHhcCcEEEEEEc
Confidence 5899999999999988884
No 226
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=69.18 E-value=2.6 Score=42.57 Aligned_cols=58 Identities=17% Similarity=0.220 Sum_probs=49.2
Q ss_pred EeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCCCcEEEEEeCCHHHHHHHHHHhCCCccc
Q 020783 114 VTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFR 173 (321)
Q Consensus 114 V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 173 (321)
+.|.+-..+-.-|-.+|.+||.|..+....+-+ .|.|+|.+.+.|..|.+.++|+++.
T Consensus 303 ~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N--~alvs~~s~~sai~a~dAl~gkevs 360 (1007)
T KOG4574|consen 303 LENNAVNLTSSSLATLCSDYGSVASAWTLRDLN--MALVSFSSVESAILALDALQGKEVS 360 (1007)
T ss_pred hhcccccchHHHHHHHHHhhcchhhheeccccc--chhhhhHHHHHHHHhhhhhcCCccc
Confidence 344444566778899999999999999987755 8999999999999999999999874
No 227
>KOG3580 consensus Tight junction proteins [Signal transduction mechanisms]
Probab=68.78 E-value=31 Score=34.02 Aligned_cols=40 Identities=25% Similarity=0.336 Sum_probs=27.1
Q ss_pred CCCCcEEEEeCCCCC-CCHHHHHHHHHhcCCcEEEEEEEcC
Q 020783 106 RRSDYRVLVTGLPSS-ASWQDLKDHMRRAGDVCFSQVFRDR 145 (321)
Q Consensus 106 ~~~~~~i~V~nl~~~-~t~~~l~~~f~~~G~i~~~~i~~~~ 145 (321)
......+.|.+++-+ +.-..--+.+.+.|++..|.+....
T Consensus 58 QenDrvvMVNGvsMenv~haFAvQqLrksgK~A~ItvkRpr 98 (1027)
T KOG3580|consen 58 QENDRVVMVNGVSMENVLHAFAVQQLRKSGKVAAITVKRPR 98 (1027)
T ss_pred ccCCeEEEEcCcchhhhHHHHHHHHHHhhccceeEEecccc
Confidence 345567788877653 4444455677889999888887653
No 228
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=66.67 E-value=4.7 Score=30.97 Aligned_cols=56 Identities=21% Similarity=0.329 Sum_probs=29.4
Q ss_pred eEEEcCCCCC---------CCHHHHHHHHhccCCeeEEEEccCCCCCcEEEEEEcCHHHH-HHHHH
Q 020783 8 TLYVGNLPGD---------TRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDA-EDAIR 63 (321)
Q Consensus 8 ~l~V~nLp~~---------~te~~L~~~F~~~G~I~~v~l~~~~~~kg~aFVeF~~~e~A-~~A~~ 63 (321)
++.|-|++.. ++.++|.+.|..|..++-.-+.....+.|++.|+|...-.. ..|+.
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~kv~~l~~~~gh~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLKVKPLYGKQGHTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SEEEEEEETTEEEEEEEEE--SSHHHHHHHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCceeEECcCCCCCcEEEEEEECCChHHHHHHHH
Confidence 4566777543 46678999999998876444433334589999999976443 33443
No 229
>KOG2146 consensus Splicing coactivator SRm160/300, subunit SRm160 (contains PWI domain) [RNA processing and modification; General function prediction only]
Probab=64.65 E-value=28 Score=30.89 Aligned_cols=19 Identities=26% Similarity=0.151 Sum_probs=9.0
Q ss_pred EEEEcCHHHHHHHHHhcCC
Q 020783 49 FLEFEDYRDAEDAIRGRDG 67 (321)
Q Consensus 49 FVeF~~~e~A~~A~~~l~g 67 (321)
.|-|++....+-.+..|.-
T Consensus 56 ilgfEDdVViefvynqLee 74 (354)
T KOG2146|consen 56 ILGFEDDVVIEFVYNQLEE 74 (354)
T ss_pred hhccccchhHHHHHHHHhh
Confidence 3445555554445444443
No 230
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=64.46 E-value=26 Score=32.66 Aligned_cols=36 Identities=17% Similarity=0.410 Sum_probs=30.7
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHHHHhcc----CCeeEEEE
Q 020783 3 SRSSRTLYVGNLPGD-TRMREVEDLFYKY----GPIVDIDL 38 (321)
Q Consensus 3 ~~~~~~l~V~nLp~~-~te~~L~~~F~~~----G~I~~v~l 38 (321)
+.++++|-|-|+.|+ +...+|..+|+.| |+|..|.|
T Consensus 143 G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~i 183 (622)
T COG5638 143 GNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKI 183 (622)
T ss_pred CCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEe
Confidence 567899999999997 8889999999877 67877776
No 231
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=63.14 E-value=15 Score=33.45 Aligned_cols=56 Identities=20% Similarity=0.151 Sum_probs=38.9
Q ss_pred EEEEEcCHHHHHHHHHhcCCcccCCceEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcEEEEeCCCCCCCHHHHH
Q 020783 48 AFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLK 127 (321)
Q Consensus 48 aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~nl~~~~t~~~l~ 127 (321)
|||+|.+..+|..|.+.+.... +..+.++.|..+. -|...||.....+..++
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~APeP~--------------------------DI~W~NL~~~~~~r~~R 52 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAPEPD--------------------------DIIWENLSISSKQRFLR 52 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCCCcc--------------------------cccccccCCChHHHHHH
Confidence 7999999999999999554433 3445666655443 47788887766666665
Q ss_pred HHHH
Q 020783 128 DHMR 131 (321)
Q Consensus 128 ~~f~ 131 (321)
..+.
T Consensus 53 ~~~~ 56 (325)
T PF02714_consen 53 RIIV 56 (325)
T ss_pred HHHH
Confidence 5444
No 232
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=62.89 E-value=17 Score=26.30 Aligned_cols=50 Identities=22% Similarity=0.245 Sum_probs=36.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEccCCCCCcEEEEEEcC
Q 020783 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFED 54 (321)
Q Consensus 5 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~~~~~kg~aFVeF~~ 54 (321)
...-|||||++..+.|.-...+.+..+.-.-+-+..+....||+|-...+
T Consensus 24 i~~GVyVg~~s~rVRe~lW~~v~~~~~~G~a~m~~~~~neqG~~~~t~G~ 73 (86)
T PF09707_consen 24 IRPGVYVGNVSARVRERLWERVTEWIGDGSAVMVWSDNNEQGFDFRTLGD 73 (86)
T ss_pred cCCCcEEcCCCHHHHHHHHHHHHhhCCCccEEEEEccCCCCCEEEEEeCC
Confidence 34569999999999887777777666655455554455579999988844
No 233
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.07 E-value=21 Score=33.23 Aligned_cols=55 Identities=18% Similarity=0.289 Sum_probs=44.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEccCCCCCcEEEEEEcCHHHHHHHHH
Q 020783 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIR 63 (321)
Q Consensus 6 ~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~~~~~kg~aFVeF~~~e~A~~A~~ 63 (321)
.+.|-|.|+|.....+||...|+.|+. ..++|++-. .-.||-.|.....|..||.
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~-kgfdIkWvD--dthalaVFss~~~AaeaLt 445 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQN-KGFDIKWVD--DTHALAVFSSVNRAAEALT 445 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhc-CCceeEEee--cceeEEeecchHHHHHHhh
Confidence 367889999999999999999999975 444443311 3469999999999999998
No 234
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=58.58 E-value=17 Score=32.25 Aligned_cols=47 Identities=19% Similarity=0.306 Sum_probs=35.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEccCCCCCcEEEEEEcCH
Q 020783 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDY 55 (321)
Q Consensus 7 ~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~~~~~kg~aFVeF~~~ 55 (321)
.-||++||+.++.-.||...+.+-|-+ .+.+-+.|+ .|-||+-|.+.
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~-pm~iswkg~-~~k~flh~~~~ 377 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECT-PMSISWKGH-FGKCFLHFGNR 377 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCC-ceeEeeecC-CcceeEecCCc
Confidence 459999999999999999999888732 333333333 67899999875
No 235
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=54.85 E-value=60 Score=21.52 Aligned_cols=44 Identities=20% Similarity=0.307 Sum_probs=31.6
Q ss_pred CHHHHHHHHhccC-CeeEEEEccCCCCCcEEEEEEcCHHHHHHHHH
Q 020783 19 RMREVEDLFYKYG-PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIR 63 (321)
Q Consensus 19 te~~L~~~F~~~G-~I~~v~l~~~~~~kg~aFVeF~~~e~A~~A~~ 63 (321)
.-.+|.++|.+.| .|.++.....+. +++.-+.+.+.+.|.+++.
T Consensus 14 ~La~v~~~l~~~~inI~~i~~~~~~~-~~~~rl~~~~~~~~~~~L~ 58 (66)
T cd04908 14 RLAAVTEILSEAGINIRALSIADTSE-FGILRLIVSDPDKAKEALK 58 (66)
T ss_pred hHHHHHHHHHHCCCCEEEEEEEecCC-CCEEEEEECCHHHHHHHHH
Confidence 3456888998887 788887754433 5666667777778887776
No 236
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=54.65 E-value=77 Score=28.26 Aligned_cols=50 Identities=12% Similarity=0.086 Sum_probs=38.5
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCCCcEEEEEeCCH
Q 020783 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSY 157 (321)
Q Consensus 107 ~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~afV~f~~~ 157 (321)
...+-|+++||+.++.-.||+..+.+-+.+ -+.+.+...-+.||+.|.+.
T Consensus 328 ~~~~di~~~nl~rd~rv~dlk~~lr~~~~~-pm~iswkg~~~k~flh~~~~ 377 (396)
T KOG4410|consen 328 GAKTDIKLTNLSRDIRVKDLKSELRKRECT-PMSISWKGHFGKCFLHFGNR 377 (396)
T ss_pred ccccceeeccCccccchHHHHHHHHhcCCC-ceeEeeecCCcceeEecCCc
Confidence 345679999999999999999999987753 34445555556899999764
No 237
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=53.50 E-value=16 Score=32.23 Aligned_cols=65 Identities=20% Similarity=0.491 Sum_probs=44.3
Q ss_pred CCeEEEcCCCCC------------CCHHHHHHHHhccCCeeEEEEcc--------CCCC-----CcE---------EEEE
Q 020783 6 SRTLYVGNLPGD------------TRMREVEDLFYKYGPIVDIDLKI--------PPRP-----PGY---------AFLE 51 (321)
Q Consensus 6 ~~~l~V~nLp~~------------~te~~L~~~F~~~G~I~~v~l~~--------~~~~-----kg~---------aFVe 51 (321)
..|||+.+||-. -+++-|+..|+.||.|..|.++. +++. .|| |||+
T Consensus 149 pdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvq 228 (445)
T KOG2891|consen 149 PDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQ 228 (445)
T ss_pred CCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHH
Confidence 457888888853 46778999999999999999843 2322 333 3456
Q ss_pred EcCHHHHHHHHHhcCCccc
Q 020783 52 FEDYRDAEDAIRGRDGYNF 70 (321)
Q Consensus 52 F~~~e~A~~A~~~l~g~~i 70 (321)
|..-..-..|+..|-|..+
T Consensus 229 fmeykgfa~amdalr~~k~ 247 (445)
T KOG2891|consen 229 FMEYKGFAQAMDALRGMKL 247 (445)
T ss_pred HHHHHhHHHHHHHHhcchH
Confidence 6655555666666666544
No 238
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=53.01 E-value=57 Score=20.68 Aligned_cols=43 Identities=23% Similarity=0.312 Sum_probs=32.1
Q ss_pred HHHHHHHHhccC-CeeEEEEccCCCCCcEEEEEEcCHHHHHHHH
Q 020783 20 MREVEDLFYKYG-PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAI 62 (321)
Q Consensus 20 e~~L~~~F~~~G-~I~~v~l~~~~~~kg~aFVeF~~~e~A~~A~ 62 (321)
-.++.++|.+.| .|..+.+.......+..-+.+.+.+.|.+++
T Consensus 12 l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~~~~a~~~l 55 (56)
T cd04889 12 LAEVTEILAEAGINIKAISIAETRGEFGILRLIFSDPERAKEVL 55 (56)
T ss_pred HHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECCHHHHHHHh
Confidence 345777888877 8888887554445788888899988888775
No 239
>KOG4246 consensus Predicted DNA-binding protein, contains SAP domain [General function prediction only]
Probab=51.09 E-value=5.7 Score=40.23 Aligned_cols=24 Identities=4% Similarity=-0.062 Sum_probs=12.9
Q ss_pred CCcEEEEeCCCCC------CCHHHHHHHHH
Q 020783 108 SDYRVLVTGLPSS------ASWQDLKDHMR 131 (321)
Q Consensus 108 ~~~~i~V~nl~~~------~t~~~l~~~f~ 131 (321)
...++|++++... ++++.+..+-.
T Consensus 144 ~~qR~f~gvvtk~~DtygfVD~dvffQls~ 173 (1194)
T KOG4246|consen 144 EPQRRFAGVVTKQTDTYGFVDQDVFFQLSK 173 (1194)
T ss_pred CcceeeehhhhhhccccccccHHHHHHHHH
Confidence 4557777766443 34444554444
No 240
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=50.46 E-value=28 Score=25.72 Aligned_cols=50 Identities=14% Similarity=0.130 Sum_probs=33.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEccCCCCCcEEEEEEcCH
Q 020783 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDY 55 (321)
Q Consensus 6 ~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~~~~~kg~aFVeF~~~ 55 (321)
..-||||+++..+.+.--..+-+.++.=.-+-+..+....||+|-++.+.
T Consensus 27 ~~GVyVg~~S~rVRd~lW~~v~~~~~~G~avmv~~~~~eqG~~~~t~G~~ 76 (97)
T PRK11558 27 RAGVYVGDVSRRIREMIWQQVTQLAEEGNVVMAWATNTESGFEFQTFGEN 76 (97)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHHhCCCCcEEEEEcCCCCCCcEEEecCCC
Confidence 45699999998888765555555555433333344555679999888764
No 241
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=50.26 E-value=2.2 Score=41.06 Aligned_cols=69 Identities=14% Similarity=0.189 Sum_probs=53.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcc---CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCc
Q 020783 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGY 73 (321)
Q Consensus 5 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~---~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~ 73 (321)
.+++||+.|++|+++-++|..+...+--+..+.+-. ......+++|.|.---....|...||+.-+...
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~ 301 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSN 301 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccccc
Confidence 467899999999999999999999997777777632 234467789999877777777777777666543
No 242
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=48.35 E-value=1.3e+02 Score=23.44 Aligned_cols=72 Identities=15% Similarity=0.082 Sum_probs=52.1
Q ss_pred CCCeEEEcCCCCC---CCHHHHHHHHhccC-CeeEEEEccCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEc
Q 020783 5 SSRTLYVGNLPGD---TRMREVEDLFYKYG-PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (321)
Q Consensus 5 ~~~~l~V~nLp~~---~te~~L~~~F~~~G-~I~~v~l~~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a 80 (321)
++..|.|.+.... .+-..+.+.+..-| .++.+..- .+-..|.|.+.++-.+|.+.|....=++-.|.+..+
T Consensus 34 edpavQIs~~~~g~~~~~~~~v~~~L~~~gI~~ksi~~~-----~~~~~irf~~~~~Ql~Ak~vL~~~L~~~y~VAlnl~ 108 (127)
T PRK10629 34 QESTLAIRAVHQGASLPDGFYVYQHLDANGIHIKSITPE-----NDSLLIRFDSPEQSAAAKEVLDRTLPHGYIIAQQDD 108 (127)
T ss_pred CCceEEEecCCCCCccchHHHHHHHHHHCCCCcceEEee-----CCEEEEEECCHHHHHHHHHHHHHHcCCCCEEEEecC
Confidence 4566778776444 57778888888888 66666654 346889999999999999888776555555655554
Q ss_pred c
Q 020783 81 H 81 (321)
Q Consensus 81 ~ 81 (321)
.
T Consensus 109 p 109 (127)
T PRK10629 109 N 109 (127)
T ss_pred C
Confidence 4
No 243
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=47.61 E-value=24 Score=29.15 Aligned_cols=42 Identities=10% Similarity=0.083 Sum_probs=30.7
Q ss_pred HHHHHHHHhccCCeeEEEEccC--C--CCCcEEEEEEcCHHHHHHHHH
Q 020783 20 MREVEDLFYKYGPIVDIDLKIP--P--RPPGYAFLEFEDYRDAEDAIR 63 (321)
Q Consensus 20 e~~L~~~F~~~G~I~~v~l~~~--~--~~kg~aFVeF~~~e~A~~A~~ 63 (321)
.++|.++-+ |++..|.+... + ..+|-.||+|.+.++|.+.++
T Consensus 123 l~~l~qw~~--~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~ 168 (205)
T KOG4213|consen 123 LDDLNQWAS--GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDD 168 (205)
T ss_pred HHHHHHHhc--ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhh
Confidence 334444444 79999998432 2 347899999999999998776
No 244
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=47.41 E-value=10 Score=27.50 Aligned_cols=26 Identities=27% Similarity=0.335 Sum_probs=22.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHh
Q 020783 3 SRSSRTLYVGNLPGDTRMREVEDLFY 28 (321)
Q Consensus 3 ~~~~~~l~V~nLp~~~te~~L~~~F~ 28 (321)
.-+.++|.|.|||..+++++|++.++
T Consensus 49 ~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 49 GVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred cccCCEEEEeCCCCCCChhhheeeEE
Confidence 34678999999999999999987653
No 245
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=47.32 E-value=57 Score=26.02 Aligned_cols=55 Identities=18% Similarity=0.219 Sum_probs=38.0
Q ss_pred eEEEcCCCCCCCHHHHHHHHhc-cC-CeeEEEEccCCCCCcEEEEEEcCHHHHHHHH
Q 020783 8 TLYVGNLPGDTRMREVEDLFYK-YG-PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAI 62 (321)
Q Consensus 8 ~l~V~nLp~~~te~~L~~~F~~-~G-~I~~v~l~~~~~~kg~aFVeF~~~e~A~~A~ 62 (321)
+-|+--++..++..+|.+.++. |+ .|..|.........-=|||.+....+|....
T Consensus 83 N~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~g~KKA~V~L~~~~~aidva 139 (145)
T PTZ00191 83 NTLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPDGLKKAYIRLSPDVDALDVA 139 (145)
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCCCceEEEEEECCCCcHHHHH
Confidence 4566667889999999999987 44 5555555433333345999998877765543
No 246
>KOG4246 consensus Predicted DNA-binding protein, contains SAP domain [General function prediction only]
Probab=45.82 E-value=9.2 Score=38.84 Aligned_cols=7 Identities=14% Similarity=0.316 Sum_probs=2.7
Q ss_pred EEEEEEc
Q 020783 47 YAFLEFE 53 (321)
Q Consensus 47 ~aFVeF~ 53 (321)
|+.+...
T Consensus 61 y~~t~~~ 67 (1194)
T KOG4246|consen 61 YGSTSLS 67 (1194)
T ss_pred ccccchh
Confidence 3334333
No 247
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.40 E-value=1.4e+02 Score=29.48 Aligned_cols=77 Identities=17% Similarity=0.234 Sum_probs=58.4
Q ss_pred CCCcEEEEeCCCCC-CCHHHHHHHHHhc----CCcEEEEEEEcC------------CC----------------------
Q 020783 107 RSDYRVLVTGLPSS-ASWQDLKDHMRRA----GDVCFSQVFRDR------------GG---------------------- 147 (321)
Q Consensus 107 ~~~~~i~V~nl~~~-~t~~~l~~~f~~~----G~i~~~~i~~~~------------~~---------------------- 147 (321)
....+|-|.|+.-+ +...+|.-+|..| |.|..|.|+... +.
T Consensus 172 ~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~ 251 (650)
T KOG2318|consen 172 EETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEE 251 (650)
T ss_pred cccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhhh
Confidence 35678999999885 6888898888765 578888887431 00
Q ss_pred -----------------cEEEEEeCCHHHHHHHHHHhCCCcccCccceeEEEE
Q 020783 148 -----------------MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 183 (321)
Q Consensus 148 -----------------g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~i~v 183 (321)
.||.|+|.+.+.|.......+|.++........++.
T Consensus 252 ~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRF 304 (650)
T KOG2318|consen 252 DVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRF 304 (650)
T ss_pred hHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeee
Confidence 189999999999999999999999976443344443
No 248
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=43.89 E-value=1e+02 Score=20.99 Aligned_cols=50 Identities=16% Similarity=0.157 Sum_probs=38.7
Q ss_pred CCCHHHHHHHHHhcCCcEEEEEEEcCCCcEEEEEeCCHHHHHHHHHHhCCCcccC
Q 020783 120 SASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRN 174 (321)
Q Consensus 120 ~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 174 (321)
.++-++++..+.+|+-.. |..+.. | -||-|.+..+|+++....++..+.+
T Consensus 11 ~~~v~d~K~~Lr~y~~~~---I~~d~t-G-fYIvF~~~~Ea~rC~~~~~~~~~f~ 60 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWDR---IRDDRT-G-FYIVFNDSKEAERCFRAEDGTLFFT 60 (66)
T ss_pred CccHHHHHHHHhcCCcce---EEecCC-E-EEEEECChHHHHHHHHhcCCCEEEE
Confidence 467889999999987542 333332 2 4699999999999999999988876
No 249
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=43.18 E-value=42 Score=25.72 Aligned_cols=47 Identities=15% Similarity=0.235 Sum_probs=24.9
Q ss_pred EEEEeCCCCC---------CCHHHHHHHHHhcCCcEEEEEEEcCCC--cEEEEEeCCHH
Q 020783 111 RVLVTGLPSS---------ASWQDLKDHMRRAGDVCFSQVFRDRGG--MTGIVDYTSYD 158 (321)
Q Consensus 111 ~i~V~nl~~~---------~t~~~l~~~f~~~G~i~~~~i~~~~~~--g~afV~f~~~~ 158 (321)
.+.|.|++.. .+.++|.+.|..|.++.. ....+..+ +++.|+|..--
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~kv-~~l~~~~gh~g~aiv~F~~~w 67 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLKV-KPLYGKQGHTGFAIVEFNKDW 67 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SEE-EEEEETTEEEEEEEEE--SSH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCcee-EECcCCCCCcEEEEEEECCCh
Confidence 5566666443 355789999999998864 44455443 69999997643
No 250
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=42.26 E-value=29 Score=32.16 Aligned_cols=66 Identities=15% Similarity=0.256 Sum_probs=49.9
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEE-cCCC------cEEEEEeCCHHHHHHHHHHhCCCcccC
Q 020783 109 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFR-DRGG------MTGIVDYTSYDDMKYAIRKLDRSEFRN 174 (321)
Q Consensus 109 ~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~-~~~~------g~afV~f~~~~~a~~A~~~l~g~~~~g 174 (321)
...+.|..||+..++.+|.+....+-.-.+...+. +..+ +.|+|.|..+++...-.+.++|..|-.
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifld 79 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFLD 79 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEec
Confidence 34788999999999999999888866444433333 2111 388999999999998888899988754
No 251
>PF15221 LEP503: Lens epithelial cell protein LEP503
Probab=41.68 E-value=1.9 Score=27.81 Aligned_cols=20 Identities=40% Similarity=0.534 Sum_probs=16.8
Q ss_pred eeeeeeeeeeeccccccccc
Q 020783 299 LVLEVMLFLLMSTCGKNLID 318 (321)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~ 318 (321)
-+-|+..+++||=|.|+|||
T Consensus 42 tLKe~aYilLCCWCIKelLD 61 (61)
T PF15221_consen 42 TLKEVAYILLCCWCIKELLD 61 (61)
T ss_pred HHHHHHHHHHHHHHHHHHcC
Confidence 34577788999999999997
No 252
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=41.62 E-value=59 Score=23.14 Aligned_cols=35 Identities=31% Similarity=0.384 Sum_probs=24.7
Q ss_pred CeeEEEEccCCCCCcEEEEEEcCHHHHHHHHHhcCCc
Q 020783 32 PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68 (321)
Q Consensus 32 ~I~~v~l~~~~~~kg~aFVeF~~~e~A~~A~~~l~g~ 68 (321)
.|.++..+ +..+||-|||=.++.++..|+..+.+.
T Consensus 33 ~I~Si~~~--~~lkGyIyVEA~~~~~V~~ai~gi~~i 67 (84)
T PF03439_consen 33 NIYSIFAP--DSLKGYIYVEAERESDVKEAIRGIRHI 67 (84)
T ss_dssp ---EEEE---TTSTSEEEEEESSHHHHHHHHTT-TTE
T ss_pred ceEEEEEe--CCCceEEEEEeCCHHHHHHHHhcccce
Confidence 44444443 457999999999999999999877664
No 253
>CHL00123 rps6 ribosomal protein S6; Validated
Probab=40.82 E-value=77 Score=23.30 Aligned_cols=50 Identities=14% Similarity=0.199 Sum_probs=33.3
Q ss_pred CCCCCCHHHHHHHHhc-------c-CCeeEEEE--------ccCCCCCc-EEEEEEcCHHHHHHHHH
Q 020783 14 LPGDTRMREVEDLFYK-------Y-GPIVDIDL--------KIPPRPPG-YAFLEFEDYRDAEDAIR 63 (321)
Q Consensus 14 Lp~~~te~~L~~~F~~-------~-G~I~~v~l--------~~~~~~kg-~aFVeF~~~e~A~~A~~ 63 (321)
|.++++++++..+.++ . |.|..+.- ...+...| |.++.|.-..++.+.++
T Consensus 14 l~p~l~e~~~~~~~~~~~~~i~~~gg~i~~~~~wG~r~LAY~I~k~~~G~Yv~~~f~~~~~~i~ele 80 (97)
T CHL00123 14 LKPDLNEEELLKWIENYKKLLRKRGAKNISVQNRGKRKLSYKINKYEDGIYIQMNYSGNGKLVNSLE 80 (97)
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCeeeeEEcCCCCEEEEEEEEEEECHHHHHHHH
Confidence 5678888887666544 3 46666654 22445556 68889997777777775
No 254
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=39.34 E-value=33 Score=31.74 Aligned_cols=65 Identities=20% Similarity=0.298 Sum_probs=47.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcc------CCCCCcEEEEEEcCHHHHHHHHHhcCCccc
Q 020783 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI------PPRPPGYAFLEFEDYRDAEDAIRGRDGYNF 70 (321)
Q Consensus 6 ~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~------~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i 70 (321)
-..|.|.+||+..|+.+|.+-...|-.=....... ..+--+.|||-|..+++...-...++|..+
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 35688999999999999988887764322222211 123357899999999998888888888655
No 255
>TIGR01873 cas_CT1978 CRISPR-associated endoribonuclease Cas2, E. coli subfamily. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model represents a minor branch of the Cas2 family of CRISPR-associated endonuclease, whereas most Cas2 proteins are modeled instead by TIGR01573. This form of Cas2 is characteristic for the Ecoli subtype of CRISPR/Cas locus.
Probab=38.62 E-value=53 Score=23.75 Aligned_cols=49 Identities=18% Similarity=0.207 Sum_probs=30.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhc-cCCeeEEEEccCCCCCcEEEEEEcC
Q 020783 6 SRTLYVGNLPGDTRMREVEDLFYK-YGPIVDIDLKIPPRPPGYAFLEFED 54 (321)
Q Consensus 6 ~~~l~V~nLp~~~te~~L~~~F~~-~G~I~~v~l~~~~~~kg~aFVeF~~ 54 (321)
..-||||+++..+.+.--..+-+. .+.=.-+-+..++...||+|-++.+
T Consensus 25 ~~GVyVg~~s~rVRe~lW~~v~~~~~~~G~avm~~~~~~e~G~~~~t~G~ 74 (87)
T TIGR01873 25 RAGVYVGGVSASVRERIWDYLAQHCPPKGSLVITWSSNTCPGFEFFTLGE 74 (87)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHHhCCCCccEEEEEeCCCCCCcEEEecCC
Confidence 456999999988876544444443 3332223334455567898888766
No 256
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=38.58 E-value=25 Score=30.35 Aligned_cols=35 Identities=11% Similarity=0.243 Sum_probs=30.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEE
Q 020783 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDL 38 (321)
Q Consensus 4 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l 38 (321)
....+||+-|||..+|++.|..+.+++|-++.+.+
T Consensus 38 ~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~y 72 (261)
T KOG4008|consen 38 NEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQELLY 72 (261)
T ss_pred ccccceeeecccccccHHHHHHHHHHhhhhhheec
Confidence 34578999999999999999999999997766655
No 257
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=37.99 E-value=26 Score=20.77 Aligned_cols=17 Identities=18% Similarity=0.323 Sum_probs=10.6
Q ss_pred CCCCHHHHHHHHhccCC
Q 020783 16 GDTRMREVEDLFYKYGP 32 (321)
Q Consensus 16 ~~~te~~L~~~F~~~G~ 32 (321)
.++++++|++.|.+.++
T Consensus 19 ~Dtd~~~Lk~vF~~i~~ 35 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIKK 35 (36)
T ss_dssp S---HHHHHHHHHCS--
T ss_pred ccCCHHHHHHHHHHhcc
Confidence 36899999999988764
No 258
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=34.04 E-value=1.5e+02 Score=23.77 Aligned_cols=33 Identities=33% Similarity=0.361 Sum_probs=25.8
Q ss_pred eeEEEEccCCCCCcEEEEEEcCHHHHHHHHHhcCC
Q 020783 33 IVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDG 67 (321)
Q Consensus 33 I~~v~l~~~~~~kg~aFVeF~~~e~A~~A~~~l~g 67 (321)
|.++.++. ..+||.||+....+++..++..+.+
T Consensus 36 i~~i~vp~--~fpGYVfVe~~~~~~~~~~i~~v~~ 68 (153)
T PRK08559 36 IYAILAPP--ELKGYVLVEAESKGAVEEAIRGIPH 68 (153)
T ss_pred EEEEEccC--CCCcEEEEEEEChHHHHHHHhcCCC
Confidence 55665543 4699999999988999999987765
No 259
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=33.66 E-value=1.8e+02 Score=20.85 Aligned_cols=56 Identities=16% Similarity=0.079 Sum_probs=41.3
Q ss_pred EEEeCCCCCCCHHHHHHHHHh-cC-CcEEEEEEEcCCC-cEEEEEeCCHHHHHHHHHHh
Q 020783 112 VLVTGLPSSASWQDLKDHMRR-AG-DVCFSQVFRDRGG-MTGIVDYTSYDDMKYAIRKL 167 (321)
Q Consensus 112 i~V~nl~~~~t~~~l~~~f~~-~G-~i~~~~i~~~~~~-g~afV~f~~~~~a~~A~~~l 167 (321)
.|+--.+..++..+|+..+++ || .|..|.....+.+ ..|+|.+..-.+|.+...++
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGEKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCcEEEEEEeCCCCcHHHHHHhh
Confidence 334446778899999999987 55 6777776665544 58999999988888776544
No 260
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=33.65 E-value=49 Score=22.76 Aligned_cols=28 Identities=18% Similarity=0.120 Sum_probs=22.7
Q ss_pred cEEEEEEcCHHHHHHHHHhcCCcccCCc
Q 020783 46 GYAFLEFEDYRDAEDAIRGRDGYNFDGY 73 (321)
Q Consensus 46 g~aFVeF~~~e~A~~A~~~l~g~~i~g~ 73 (321)
.+++|.|.+..+|.+|-+.|....+..+
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi~~~ 29 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGIPVR 29 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCcEE
Confidence 4789999999999999998876655443
No 261
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=32.95 E-value=1.1e+02 Score=21.10 Aligned_cols=59 Identities=19% Similarity=0.280 Sum_probs=42.3
Q ss_pred HHHHHHHhccC-CeeEEEEcc---CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEccC
Q 020783 21 REVEDLFYKYG-PIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (321)
Q Consensus 21 ~~L~~~F~~~G-~I~~v~l~~---~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a~~ 82 (321)
++|.+-|...| .+..+.-+. ++.+...-||+.....+-.. .|+=..++|+.+.|+....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~k 64 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPHK 64 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCcc
Confidence 47888899998 777776644 34566778888887655444 4556778899999887554
No 262
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=32.27 E-value=2e+02 Score=22.03 Aligned_cols=24 Identities=29% Similarity=0.342 Sum_probs=18.9
Q ss_pred CCCCCCHHHHHHHHhccCCeeEEEEc
Q 020783 14 LPGDTRMREVEDLFYKYGPIVDIDLK 39 (321)
Q Consensus 14 Lp~~~te~~L~~~F~~~G~I~~v~l~ 39 (321)
||+-++ .|-++|+.=|+|.+|...
T Consensus 11 lPPYTn--KLSDYfeSPGKI~svItv 34 (145)
T TIGR02542 11 LPPYTN--KLSDYFESPGKIQSVITV 34 (145)
T ss_pred cCCccc--hhhHHhcCCCceEEEEEE
Confidence 677665 488999999999987553
No 263
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=31.71 E-value=23 Score=31.29 Aligned_cols=64 Identities=14% Similarity=0.205 Sum_probs=43.0
Q ss_pred cEEEEeCCCCC------------CCHHHHHHHHHhcCCcEEEEEEEc-C--------CC-----c---------EEEEEe
Q 020783 110 YRVLVTGLPSS------------ASWQDLKDHMRRAGDVCFSQVFRD-R--------GG-----M---------TGIVDY 154 (321)
Q Consensus 110 ~~i~V~nl~~~------------~t~~~l~~~f~~~G~i~~~~i~~~-~--------~~-----g---------~afV~f 154 (321)
.+|++.++|-. .+++.|...|..||.|..|.|+.- + .. | -|||+|
T Consensus 150 dti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvqf 229 (445)
T KOG2891|consen 150 DTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQF 229 (445)
T ss_pred CceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHHH
Confidence 37788777753 457789999999999999988742 1 11 1 244555
Q ss_pred CCHHHHHHHHHHhCCCccc
Q 020783 155 TSYDDMKYAIRKLDRSEFR 173 (321)
Q Consensus 155 ~~~~~a~~A~~~l~g~~~~ 173 (321)
....--..|+..|.|..+.
T Consensus 230 meykgfa~amdalr~~k~a 248 (445)
T KOG2891|consen 230 MEYKGFAQAMDALRGMKLA 248 (445)
T ss_pred HHHHhHHHHHHHHhcchHH
Confidence 5555556677777776653
No 264
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=31.71 E-value=3.8e+02 Score=26.80 Aligned_cols=98 Identities=14% Similarity=0.131 Sum_probs=62.9
Q ss_pred CHHHHHHHHhccCCeeEEEEccCCCCCcEEEEEEcCHHHHHHHHHhcC--Cccc------CCceEEEEEccCCCCCCCCC
Q 020783 19 RMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRD--GYNF------DGYRLRVELAHGGRRHSSSM 90 (321)
Q Consensus 19 te~~L~~~F~~~G~I~~v~l~~~~~~kg~aFVeF~~~e~A~~A~~~l~--g~~i------~g~~i~V~~a~~~~~~~~~~ 90 (321)
-.++|.+.|..-+-|..|.+.. .||-++......-+......+. +..+ .|++|.|++......
T Consensus 59 iA~~i~~~l~~~~~~~~veiaG----pgfINf~l~~~~~~~~~~~~l~~~~~~~G~~~~~~~~kV~iE~sSaNpt----- 129 (577)
T COG0018 59 IAEEIAEKLDTDEIIEKVEIAG----PGFINFFLSPEFLAELLLEILEKGDDRYGRSKLGKGKKVVIEYSSANPT----- 129 (577)
T ss_pred HHHHHHHhccccCcEeEEEEcC----CCEEEEEECHHHHHHHHHHHHHhcccccCccccCCCCEEEEEEeCCCCC-----
Confidence 3455666666655677777752 3666666665444444444443 2222 578999999775442
Q ss_pred CCCCCCCCCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CcEEEEEEEc
Q 020783 91 DRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAG-DVCFSQVFRD 144 (321)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~i~V~nl~~~~t~~~l~~~f~~~G-~i~~~~i~~~ 144 (321)
..++|+.+-..+=-+-|-.+++..| .|+......|
T Consensus 130 -------------------kplHiGHlR~aiiGDsLaril~~~Gy~V~r~~yvnD 165 (577)
T COG0018 130 -------------------GPLHIGHLRNAIIGDSLARILEFLGYDVTRENYVND 165 (577)
T ss_pred -------------------CCcccchhhhhHHHHHHHHHHHHcCCCeeEEeeECc
Confidence 2478888888888888999999888 4555555555
No 265
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=31.01 E-value=66 Score=28.81 Aligned_cols=52 Identities=8% Similarity=0.112 Sum_probs=42.1
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCC-----------CcEEEEEeCCHHHHH
Q 020783 110 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG-----------GMTGIVDYTSYDDMK 161 (321)
Q Consensus 110 ~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~-----------~g~afV~f~~~~~a~ 161 (321)
+.+.+.|+..+++--.+...|.+||+|+.|++..+.. .....+.|-+.+.+-
T Consensus 16 RSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CL 78 (309)
T PF10567_consen 16 RSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICL 78 (309)
T ss_pred HHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHH
Confidence 4688899999999999999999999999999997751 126667777766554
No 266
>COG0150 PurM Phosphoribosylaminoimidazole (AIR) synthetase [Nucleotide transport and metabolism]
Probab=30.23 E-value=24 Score=32.30 Aligned_cols=50 Identities=14% Similarity=0.002 Sum_probs=40.4
Q ss_pred CCHHHHHHHHhccCCeeEEEEccCCCCCcEEEEEEcCHHHHHHHHHhcCCc
Q 020783 18 TRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68 (321)
Q Consensus 18 ~te~~L~~~F~~~G~I~~v~l~~~~~~kg~aFVeF~~~e~A~~A~~~l~g~ 68 (321)
++...|.+++.+.|.|..-.|..+- +-|.+||-.-.+++++++++.|++.
T Consensus 273 ~~~p~iF~~i~~~G~v~~~EM~rtF-NmGvG~v~iv~~e~~~~~~~~l~~~ 322 (345)
T COG0150 273 WPPPPIFKWLQKAGNVEREEMYRTF-NMGVGMVLIVPEEDAEKALALLKEQ 322 (345)
T ss_pred CCCcHHHHHHHHhcCCCHHHHHHHh-cCccceEEEEcHHHHHHHHHHHHhc
Confidence 3356789999999988776664432 3789999999999999999999875
No 267
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=28.39 E-value=1.8e+02 Score=19.85 Aligned_cols=59 Identities=20% Similarity=0.330 Sum_probs=41.7
Q ss_pred HHHHHHHhccC-CeeEEEEcc---CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEccC
Q 020783 21 REVEDLFYKYG-PIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (321)
Q Consensus 21 ~~L~~~F~~~G-~I~~v~l~~---~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a~~ 82 (321)
++|.+-|...| +|..+.-+. ++.+....||+.+...+..+++ +=..+.+..|.|+....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i~---~Ik~l~~~~V~vE~~~k 64 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEIY---KIKTLCGQRVKVERPRK 64 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCcccccee---ehHhhCCeEEEEecCCC
Confidence 57888888888 777665543 3566778899998877644443 44567888888887654
No 268
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=27.26 E-value=51 Score=27.33 Aligned_cols=63 Identities=11% Similarity=0.157 Sum_probs=45.1
Q ss_pred EEEEeCCCCCC-----CHHHHHHHHHhcCCcEEEEEEEcCCCcEEEEEeCCHHHHHHHHHHhCCCcccCc
Q 020783 111 RVLVTGLPSSA-----SWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNA 175 (321)
Q Consensus 111 ~i~V~nl~~~~-----t~~~l~~~f~~~G~i~~~~i~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 175 (321)
.+.+.+++..+ .......+|.+|.+.....+...- +..-|.|.+++.|..|..++++..|.|+
T Consensus 12 ~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrsf--rrvRi~f~~p~~a~~a~i~~~~~~f~~~ 79 (193)
T KOG4019|consen 12 AIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRSF--RRVRINFSNPEAAADARIKLHSTSFNGK 79 (193)
T ss_pred eeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHhh--ceeEEeccChhHHHHHHHHhhhcccCCC
Confidence 56677776654 233556777777766555444332 2566889999999999999999999985
No 269
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=26.28 E-value=1.3e+02 Score=21.31 Aligned_cols=32 Identities=22% Similarity=0.003 Sum_probs=23.9
Q ss_pred EEEcCCCcEEEEEeCCHHHHHHHHHHhCCCcc
Q 020783 141 VFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEF 172 (321)
Q Consensus 141 i~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~ 172 (321)
+..+.-+||.|||-.+..+...|++.+.+...
T Consensus 38 ~~~~~lkGyIyVEA~~~~~V~~ai~gi~~i~~ 69 (84)
T PF03439_consen 38 FAPDSLKGYIYVEAERESDVKEAIRGIRHIRG 69 (84)
T ss_dssp EE-TTSTSEEEEEESSHHHHHHHHTT-TTEEE
T ss_pred EEeCCCceEEEEEeCCHHHHHHHHhcccceee
Confidence 34455678999999999999999987765443
No 270
>PRK11901 hypothetical protein; Reviewed
Probab=25.87 E-value=3.5e+02 Score=24.74 Aligned_cols=61 Identities=20% Similarity=0.263 Sum_probs=40.1
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcC-CCcEEEE----EeCCHHHHHHHHHHhCCCcc
Q 020783 108 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDR-GGMTGIV----DYTSYDDMKYAIRKLDRSEF 172 (321)
Q Consensus 108 ~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~-~~g~afV----~f~~~~~a~~A~~~l~g~~~ 172 (321)
..++|-|-.+ ..++.|..+..+++. ..++++... ++.-+|| .|.+.++|..|+..|-....
T Consensus 244 ~~YTLQL~Aa---s~~~~L~~f~~~~~L-~~~~VYqT~RnGkpWYVVvyG~Y~Sr~eAk~Ai~sLPa~lq 309 (327)
T PRK11901 244 SHYTLQLSSA---SRSDTLNAYAKKQNL-SHYHVYETKRDGKPWYVLVSGNYASSAEAKRAIATLPAEVQ 309 (327)
T ss_pred CCeEEEeecC---CCHHHHHHHHHHcCc-CceEEEEEEECCceEEEEEecCcCCHHHHHHHHHhCCHHHH
Confidence 3455665553 457888888888863 445555543 3333443 58999999999988866543
No 271
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=25.86 E-value=2.2e+02 Score=19.45 Aligned_cols=44 Identities=20% Similarity=0.214 Sum_probs=30.9
Q ss_pred HHHHHHHHhcCCcEEEEEEEcCCCcEEEEEeCCHHHHHHHHHHhC
Q 020783 124 QDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLD 168 (321)
Q Consensus 124 ~~l~~~f~~~G~i~~~~i~~~~~~g~afV~f~~~~~a~~A~~~l~ 168 (321)
.++.+.+.++| +.-..+.....+++.|+-+.+.+.++++.+.+.
T Consensus 37 ~~~~~~~~~~G-a~~~~~sGsG~G~~v~~l~~~~~~~~~v~~~l~ 80 (85)
T PF08544_consen 37 DELKEAAEENG-ALGAKMSGSGGGPTVFALCKDEDDAERVAEALR 80 (85)
T ss_dssp HHHHHHHHHTT-ESEEEEETTSSSSEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-CCceecCCCCCCCeEEEEECCHHHHHHHHHHHH
Confidence 46677778888 444444444446688888889999888887663
No 272
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=24.73 E-value=2.5e+02 Score=19.70 Aligned_cols=56 Identities=14% Similarity=0.061 Sum_probs=40.5
Q ss_pred EEEeCCCCCCCHHHHHHHHHh-cC-CcEEEEEEEcCCC-cEEEEEeCCHHHHHHHHHHh
Q 020783 112 VLVTGLPSSASWQDLKDHMRR-AG-DVCFSQVFRDRGG-MTGIVDYTSYDDMKYAIRKL 167 (321)
Q Consensus 112 i~V~nl~~~~t~~~l~~~f~~-~G-~i~~~~i~~~~~~-g~afV~f~~~~~a~~A~~~l 167 (321)
.|+-..+..++..+|+..++. || +|..+....-+.+ .-|||.+..-..|.+.-.++
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~KKA~VtL~~g~~a~~va~k~ 74 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGEKKAYVKLAEEYAAEEIASRL 74 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCceEEEEEECCCCcHHHHHHhh
Confidence 445556788999999998887 55 5666666555443 48999998888887765543
No 273
>PRK05738 rplW 50S ribosomal protein L23; Reviewed
Probab=24.48 E-value=2.2e+02 Score=20.69 Aligned_cols=32 Identities=19% Similarity=0.301 Sum_probs=24.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcc-C-CeeEEEE
Q 020783 7 RTLYVGNLPGDTRMREVEDLFYKY-G-PIVDIDL 38 (321)
Q Consensus 7 ~~l~V~nLp~~~te~~L~~~F~~~-G-~I~~v~l 38 (321)
...|+-.+++.+|..||++.|+.+ | +|..|..
T Consensus 20 ~n~~~F~V~~~a~K~eIK~aie~lf~VkV~~VnT 53 (92)
T PRK05738 20 QNKYVFEVAPDATKPEIKAAVEKLFGVKVESVNT 53 (92)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHcCCceeEEEE
Confidence 345666789999999999999874 4 5555555
No 274
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=23.17 E-value=2.4e+02 Score=28.55 Aligned_cols=86 Identities=8% Similarity=0.053 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHhccCCeeEEEEccCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEccCCCCCC--CCCCCCC
Q 020783 17 DTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRHS--SSMDRYS 94 (321)
Q Consensus 17 ~~te~~L~~~F~~~G~I~~v~l~~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a~~~~~~~--~~~~~~~ 94 (321)
.++..+|..++..-+.|..-.|=.-.....|.||+-.... |...+..|++..+.|+.|.|+.+....... .......
T Consensus 498 ~~~~~~~~~~i~~~~~~~~~~ig~i~i~~~~s~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 576 (629)
T PRK11634 498 GVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGM-PGEVLQHFTRTRILNKPMNMQLLGDAQPHTGGERRGGGR 576 (629)
T ss_pred CCCHHHHHHHHHhhcCCChhhCCcEEEeCCceEEEcChhh-HHHHHHHhccccccCCceEEEECCCCCCCcccccCCCCC
Q ss_pred CCCCCCCCC
Q 020783 95 SYSSGGSRG 103 (321)
Q Consensus 95 ~~~~~~~~~ 103 (321)
.++++...+
T Consensus 577 ~~~~~~~~~ 585 (629)
T PRK11634 577 GFGGERREG 585 (629)
T ss_pred CCCCCCCCC
No 275
>PF05036 SPOR: Sporulation related domain; InterPro: IPR007730 This 70 residue domain is composed of two 35 residue repeats that are found in bacterial proteins involved in sporulation and cell division, such as FtsN, CwlM and RlpA. This repeat might be involved in binding peptidoglycan. FtsN is an essential cell division protein with a simple bitopic topology: a short N-terminal cytoplasmic segment fused to a large carboxy periplasmic domain through a single transmembrane domain. The repeats lie at the periplasmic C terminus, which has an RNP-like fold []. FtsN localises to the septum ring complex. The CwlM protein is a cell wall hydrolase, where the C-terminal region, including the repeats, determines substrate specificity []. RlpA is a rare lipoprotein A protein that may be important for cell division. Its N-terminal cysteine may be attached to thioglyceride and N-fatty acyl residues [].; PDB: 1X60_A 1UTA_A.
Probab=23.16 E-value=1.4e+02 Score=19.86 Aligned_cols=60 Identities=23% Similarity=0.313 Sum_probs=33.0
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCcEE-EEEEEcCCCcEEEE-EeCCHHHHHHHHHHhC
Q 020783 109 DYRVLVTGLPSSASWQDLKDHMRRAGDVCF-SQVFRDRGGMTGIV-DYTSYDDMKYAIRKLD 168 (321)
Q Consensus 109 ~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~-~~i~~~~~~g~afV-~f~~~~~a~~A~~~l~ 168 (321)
.+.|.|+.+...-..+.+...+...|.-.. ..+.....-...+| .|.+.++|+.++..|.
T Consensus 4 ~y~vQv~s~~~~~~A~~~~~~l~~~g~~~~~~~~~~~~~~yrV~~G~f~~~~~A~~~~~~l~ 65 (76)
T PF05036_consen 4 GYYVQVGSFSSEENAERLLAKLKKKGPDAYVVQVSKGGPWYRVRVGPFSSREEAEAALRKLK 65 (76)
T ss_dssp EEEEEEEEES-HHHHHHHHHHHHHHT-----EEEEEETTCEEEEECCECTCCHHHHHHHHHH
T ss_pred cEEEEEEEcCCHHHHHHHHHHHHhcCCCcceEEEecCCceEEEEECCCCCHHHHHHHHHHHh
Confidence 356677766655555555555555565444 22222222223333 5899999999998887
No 276
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=22.97 E-value=1.1e+02 Score=27.11 Aligned_cols=32 Identities=25% Similarity=0.101 Sum_probs=25.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCCeeEEEE
Q 020783 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDL 38 (321)
Q Consensus 7 ~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l 38 (321)
....|+|||+++|-.-|..+++..-.+..+.+
T Consensus 96 ~~~vVaNlPY~Isspii~kll~~~~~~~~~v~ 127 (259)
T COG0030 96 PYKVVANLPYNISSPILFKLLEEKFIIQDMVL 127 (259)
T ss_pred CCEEEEcCCCcccHHHHHHHHhccCccceEEE
Confidence 45679999999999999999987766544444
No 277
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=22.13 E-value=3.2e+02 Score=21.84 Aligned_cols=29 Identities=17% Similarity=0.042 Sum_probs=22.2
Q ss_pred EEEcCCCcEEEEEeCCHHHHHHHHHHhCC
Q 020783 141 VFRDRGGMTGIVDYTSYDDMKYAIRKLDR 169 (321)
Q Consensus 141 i~~~~~~g~afV~f~~~~~a~~A~~~l~g 169 (321)
+......||.||+....+++..++..+.+
T Consensus 40 ~vp~~fpGYVfVe~~~~~~~~~~i~~v~~ 68 (153)
T PRK08559 40 LAPPELKGYVLVEAESKGAVEEAIRGIPH 68 (153)
T ss_pred EccCCCCcEEEEEEEChHHHHHHHhcCCC
Confidence 33444678999999988888888877654
No 278
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=21.62 E-value=2.3e+02 Score=18.14 Aligned_cols=54 Identities=19% Similarity=0.186 Sum_probs=40.0
Q ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCCCcEEEEEeCCH----HHHHHHHHH
Q 020783 111 RVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSY----DDMKYAIRK 166 (321)
Q Consensus 111 ~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~afV~f~~~----~~a~~A~~~ 166 (321)
++.|.|+.-.-....++..+...-.|..+.+.... +.+-|.|... ++..+++++
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~--~~v~v~~~~~~~~~~~i~~~i~~ 58 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLET--KTVTVTYDPDKTSIEKIIEAIEK 58 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTT--TEEEEEESTTTSCHHHHHHHHHH
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCC--CEEEEEEecCCCCHHHHHHHHHH
Confidence 46777887777888999999999999888776554 3788888755 444555543
No 279
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=21.47 E-value=48 Score=31.00 Aligned_cols=58 Identities=21% Similarity=0.291 Sum_probs=44.7
Q ss_pred CCeEEEcCCCCCCCHH--------HHHHHHhc--cCCeeEEEEcc---CCCCCcEEEEEEcCHHHHHHHHH
Q 020783 6 SRTLYVGNLPGDTRMR--------EVEDLFYK--YGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIR 63 (321)
Q Consensus 6 ~~~l~V~nLp~~~te~--------~L~~~F~~--~G~I~~v~l~~---~~~~kg~aFVeF~~~e~A~~A~~ 63 (321)
.+.+|+.++....+.+ ++...|.. .+.+..+.+.. ...+.|-.|++|...+.|++++.
T Consensus 174 qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 174 QRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 4567777777765555 89999998 56777777732 45678889999999999998864
No 280
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=21.40 E-value=2.5e+02 Score=18.45 Aligned_cols=45 Identities=13% Similarity=0.260 Sum_probs=27.4
Q ss_pred CHHHHHHHHhccC-CeeEEEEccC-CCCCcEEEEEEc--CHHHHHHHHH
Q 020783 19 RMREVEDLFYKYG-PIVDIDLKIP-PRPPGYAFLEFE--DYRDAEDAIR 63 (321)
Q Consensus 19 te~~L~~~F~~~G-~I~~v~l~~~-~~~kg~aFVeF~--~~e~A~~A~~ 63 (321)
.-..|.++|.++| .|..+..... .......+|.+. +.+++.+++.
T Consensus 14 ~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~~~~~~~~~~~L~ 62 (72)
T cd04883 14 QLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQTMNPRPIIEDLR 62 (72)
T ss_pred HHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEecCCHHHHHHHHH
Confidence 4557888998887 7777765433 222333445554 5556666666
No 281
>PRK10905 cell division protein DamX; Validated
Probab=21.15 E-value=3.2e+02 Score=25.00 Aligned_cols=60 Identities=17% Similarity=0.257 Sum_probs=39.3
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCCCcEEEE----EeCCHHHHHHHHHHhCCCc
Q 020783 109 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIV----DYTSYDDMKYAIRKLDRSE 171 (321)
Q Consensus 109 ~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~afV----~f~~~~~a~~A~~~l~g~~ 171 (321)
.++|-|..+ .+++.|.++..+.|--.+.......++.-.|| .|.+.++|+.|+..|-...
T Consensus 247 ~YTLQL~A~---Ss~~~l~~fakKlgL~~y~vy~TtRnGkpWYVV~yG~YaSraeAk~AiakLPa~v 310 (328)
T PRK10905 247 HYTLQLSSS---SNYDNLNGWAKKENLKNYVVYETTRNGQPWYVLVSGVYASKEEAKRAVSTLPADV 310 (328)
T ss_pred ceEEEEEec---CCHHHHHHHHHHcCCCceEEEEeccCCceEEEEEecCCCCHHHHHHHHHHCCHHH
Confidence 345555544 46688888888887544444444444443444 4899999999998886544
No 282
>COG5353 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.05 E-value=4e+02 Score=21.42 Aligned_cols=53 Identities=11% Similarity=0.204 Sum_probs=39.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcc---CCeeEEEEcc------------CCCCCc-EEEEEEcCHHH
Q 020783 5 SSRTLYVGNLPGDTRMREVEDLFYKY---GPIVDIDLKI------------PPRPPG-YAFLEFEDYRD 57 (321)
Q Consensus 5 ~~~~l~V~nLp~~~te~~L~~~F~~~---G~I~~v~l~~------------~~~~kg-~aFVeF~~~e~ 57 (321)
+...||+..++..+++++.+++.++= +++..|.+-. +...+. |-+|.|++-..
T Consensus 86 d~~KI~~k~asqGISe~~a~~~i~kE~~~~e~~~V~Lg~e~~~PiWEV~y~dkeg~~s~~~vdFetG~~ 154 (161)
T COG5353 86 DDGKIYSKKASQGISEEDARAIISKEKAVKEIKSVTLGREKEKPIWEVTYLDKEGRLSFYYVDFETGKE 154 (161)
T ss_pred CCCeEEEEehhcCCCHHHHHHHHhhhccccceeEEEEEeeCCceeEEEeecCccCcceEEEEEeccchh
Confidence 34689999999999999999998765 4667777611 233445 88999988654
No 283
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=20.89 E-value=2.4e+02 Score=17.97 Aligned_cols=43 Identities=14% Similarity=0.169 Sum_probs=26.1
Q ss_pred HHHHHHHhccC-CeeEEEEccCC-CCCcEEEEEEcCHHHHHHHHH
Q 020783 21 REVEDLFYKYG-PIVDIDLKIPP-RPPGYAFLEFEDYRDAEDAIR 63 (321)
Q Consensus 21 ~~L~~~F~~~G-~I~~v~l~~~~-~~kg~aFVeF~~~e~A~~A~~ 63 (321)
.+|.++|.++| .|..+...... .......+..++.+.+.++++
T Consensus 14 ~~i~~~l~~~~~nI~~i~~~~~~~~~~~~v~~~ve~~~~~~~~L~ 58 (65)
T cd04882 14 HEILQILSEEGINIEYMYAFVEKKGGKALLIFRTEDIEKAIEVLQ 58 (65)
T ss_pred HHHHHHHHHCCCChhheEEEccCCCCeEEEEEEeCCHHHHHHHHH
Confidence 46778888886 77666653322 223444555667777666666
No 284
>PF02829 3H: 3H domain; InterPro: IPR004173 The 3H domain is named after its three highly conserved histidine residues. The 3H domain appears to be a small molecule-binding domain, based on its occurrence with other domains []. Several proteins carrying this domain are transcriptional regulators from the biotin repressor family. The transcription regulator TM1602 from Thermotoga maritima is a DNA-binding protein thought to belong to a family of de novo NAD synthesis pathway regulators. TM1602 has an N-terminal DNA-binding domain and a C-terminal 3H regulatory domain. The N-terminal domain appears to bind to the NAD promoter region and repress the de novo NAD biosynthesis operon, while the C-terminal 3H domain may bind to nicotinamide, nicotinic acid, or other substrate/products []. The 3H domain has a 2-layer alpha/beta sandwich fold.; GO: 0005488 binding; PDB: 1J5Y_A.
Probab=20.84 E-value=2.1e+02 Score=21.12 Aligned_cols=52 Identities=19% Similarity=0.173 Sum_probs=38.0
Q ss_pred CCCCHHHHHHHHhccCCeeEEEEccCCCCCcEEEEEEcCHHHHHHHHHhcCC
Q 020783 16 GDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDG 67 (321)
Q Consensus 16 ~~~te~~L~~~F~~~G~I~~v~l~~~~~~kg~aFVeF~~~e~A~~A~~~l~g 67 (321)
.+-++++|..+...-|.|.+|.+..+.-..=-|.+...+..++++.++.|+.
T Consensus 7 ~~~~~~EL~~IVd~Gg~V~DV~veHp~YG~i~~~L~i~sr~Dv~~Fi~~l~~ 58 (98)
T PF02829_consen 7 PDEIEDELEIIVDNGGRVLDVIVEHPVYGEITGNLNISSRRDVDKFIEKLEK 58 (98)
T ss_dssp GGGHHHHHHHHHHTT-EEEEEEEEETTTEEEEEEEEE-SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCEEEEEEEeCCCCcEEEEEEecCCHHHHHHHHHHHhc
Confidence 3446788888888778999999955432344577889999999999987754
No 285
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=20.57 E-value=2.3e+02 Score=27.72 Aligned_cols=60 Identities=18% Similarity=0.225 Sum_probs=40.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHHh----ccCCeeEEEEccCC--CCCcEEEEEEcCHHHHHHHHHhcC
Q 020783 7 RTLYVGNLPGDTRMREVEDLFY----KYGPIVDIDLKIPP--RPPGYAFLEFEDYRDAEDAIRGRD 66 (321)
Q Consensus 7 ~~l~V~nLp~~~te~~L~~~F~----~~G~I~~v~l~~~~--~~kg~aFVeF~~~e~A~~A~~~l~ 66 (321)
..+-++.-..+.+.-+|..+|- .+|-|..+.++..+ ......++.|.+.++|..|+..+-
T Consensus 190 ~i~~~~~~~~~~~g~dl~~l~~Gs~GtlGIIt~atlkl~p~p~~~~~~~~~f~~~~~a~~~~~~~~ 255 (499)
T PRK11230 190 EALTLGSDALDSPGFDLLALFTGSEGMLGVVTEVTVKLLPKPPVARVLLASFDSVEKAGLAVGDII 255 (499)
T ss_pred cEEEeCCccCCCCccchHhhhccCCCccEEEEEEEEEEEcCCcceEEEEEECCCHHHHHHHHHHHH
Confidence 3444443322333456777775 78999999885433 335677889999999999987653
No 286
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=20.37 E-value=87 Score=30.52 Aligned_cols=41 Identities=39% Similarity=0.600 Sum_probs=36.2
Q ss_pred CcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEccCCCC
Q 020783 45 PGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRR 85 (321)
Q Consensus 45 kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a~~~~~ 85 (321)
..|+++.|+++..+.+|+..++|..+.+..+.+..+.....
T Consensus 63 ~~~~~~~~et~~~~~ka~~~v~g~~~k~~~~~~~~~~~~~~ 103 (534)
T KOG2187|consen 63 PKYAYVTFETPSDAGKAINLVDGLLYKGFILRVQLGATEVG 103 (534)
T ss_pred CCceEEEEeccchhhhHHHHHhhhhhhcchhhhhhcccccc
Confidence 67999999999999999999999999999888888765543
No 287
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=20.32 E-value=2.9e+02 Score=18.77 Aligned_cols=49 Identities=18% Similarity=0.275 Sum_probs=29.9
Q ss_pred CHHHHHHHHhccC-CeeEEEEcc-CCC-CCcEEEEEEc-CHHHHHHHHHhcCC
Q 020783 19 RMREVEDLFYKYG-PIVDIDLKI-PPR-PPGYAFLEFE-DYRDAEDAIRGRDG 67 (321)
Q Consensus 19 te~~L~~~F~~~G-~I~~v~l~~-~~~-~kg~aFVeF~-~~e~A~~A~~~l~g 67 (321)
.-.++.+.|+.+| .+..|.=.. .+. ..-+-||+|. +.+..++|++.|..
T Consensus 13 ~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~~~~~~~~~~~l~~L~~ 65 (74)
T cd04904 13 ALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDCEVDRGDLDQLISSLRR 65 (74)
T ss_pred HHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEEEcChHHHHHHHHHHHH
Confidence 3567788888887 555554422 222 2345678888 55566778877654
Done!