Query 020783
Match_columns 321
No_of_seqs 296 out of 2958
Neff 9.1
Searched_HMMs 29240
Date Mon Mar 25 08:07:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020783.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020783hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f02_A Polyadenylate-binding p 100.0 5.4E-33 1.8E-37 238.3 17.9 164 3-188 12-180 (213)
2 3md3_A Nuclear and cytoplasmic 100.0 2.9E-31 9.8E-36 217.6 20.9 159 7-187 1-165 (166)
3 3tyt_A Heterogeneous nuclear r 100.0 3.9E-31 1.3E-35 225.1 20.4 179 4-184 2-202 (205)
4 1fxl_A Paraneoplastic encephal 100.0 6.9E-31 2.3E-35 215.6 21.3 152 5-176 1-159 (167)
5 1b7f_A Protein (SXL-lethal pro 100.0 6.4E-31 2.2E-35 216.2 20.5 151 5-175 2-159 (168)
6 1l3k_A Heterogeneous nuclear r 100.0 7.4E-31 2.5E-35 221.4 20.1 166 4-189 11-183 (196)
7 3pgw_A U1-A; protein-RNA compl 100.0 3.8E-30 1.3E-34 229.6 24.7 180 2-186 5-280 (282)
8 2yh0_A Splicing factor U2AF 65 100.0 7.5E-30 2.6E-34 215.5 23.7 178 4-189 2-194 (198)
9 2qfj_A FBP-interacting repress 100.0 6.8E-30 2.3E-34 218.7 20.9 172 5-189 27-205 (216)
10 3nmr_A Cugbp ELAV-like family 100.0 6.1E-30 2.1E-34 211.6 19.3 161 5-185 2-173 (175)
11 2adc_A Polypyrimidine tract-bi 100.0 1.7E-29 5.9E-34 218.8 21.5 178 3-187 31-226 (229)
12 2g4b_A Splicing factor U2AF 65 100.0 1.6E-29 5.6E-34 208.7 19.8 154 4-185 2-170 (172)
13 1qm9_A Polypyrimidine tract-bi 100.0 1.7E-29 5.9E-34 213.7 19.6 175 5-186 2-194 (198)
14 1fje_B Nucleolin RBD12, protei 100.0 1.1E-30 3.7E-35 216.6 11.6 162 3-188 10-173 (175)
15 2cjk_A Nuclear polyadenylated 100.0 2.5E-30 8.7E-35 212.5 13.3 158 4-188 1-165 (167)
16 3smz_A Protein raver-1, ribonu 100.0 3.3E-28 1.1E-32 217.2 20.4 165 4-189 93-264 (284)
17 3sde_A Paraspeckle component 1 100.0 2.2E-28 7.4E-33 216.0 18.5 156 4-188 20-178 (261)
18 3smz_A Protein raver-1, ribonu 100.0 1.1E-27 3.8E-32 213.8 21.1 151 4-188 20-174 (284)
19 2ghp_A U4/U6 snRNA-associated 100.0 5.1E-28 1.7E-32 216.9 18.4 166 5-188 116-290 (292)
20 2ghp_A U4/U6 snRNA-associated 100.0 2.5E-27 8.6E-32 212.4 18.8 153 4-188 39-196 (292)
21 4f25_A Polyadenylate-binding p 99.9 2.2E-23 7.4E-28 160.9 9.6 108 6-125 5-113 (115)
22 4fxv_A ELAV-like protein 1; RN 99.9 1.5E-21 5E-26 146.4 10.1 78 5-82 18-98 (99)
23 3lqv_A PRE-mRNA branch site pr 99.9 1.1E-21 3.7E-26 151.2 9.1 106 2-135 4-109 (115)
24 3pgw_S U1-70K; protein-RNA com 99.8 6.1E-20 2.1E-24 172.7 19.5 82 4-85 100-184 (437)
25 3s8s_A Histone-lysine N-methyl 99.8 1.9E-20 6.4E-25 143.0 10.4 81 3-83 3-86 (110)
26 2lxi_A RNA-binding protein 10; 99.8 8.7E-21 3E-25 139.9 8.1 80 6-85 1-85 (91)
27 1x4a_A Splicing factor, argini 99.8 3.4E-20 1.2E-24 141.4 11.7 83 3-85 19-101 (109)
28 2hvz_A Splicing factor, argini 99.8 2E-20 6.7E-25 140.7 8.7 100 7-118 1-100 (101)
29 2fy1_A RNA-binding motif prote 99.8 1.1E-19 3.6E-24 140.3 13.0 85 1-85 2-88 (116)
30 1whw_A Hypothetical protein ri 99.8 1.4E-19 4.7E-24 135.5 12.9 83 3-85 5-90 (99)
31 2lkz_A RNA-binding protein 5; 99.8 2.2E-20 7.5E-25 138.6 8.0 80 3-82 6-94 (95)
32 2cpf_A RNA binding motif prote 99.8 6.2E-20 2.1E-24 137.2 10.4 84 2-85 1-90 (98)
33 2dnz_A Probable RNA-binding pr 99.8 2E-19 6.7E-24 133.6 12.6 83 3-85 2-87 (95)
34 1sjq_A Polypyrimidine tract-bi 99.8 5.2E-20 1.8E-24 138.3 9.4 81 3-86 13-95 (105)
35 1x5t_A Splicing factor 3B subu 99.8 1.1E-19 3.7E-24 135.2 11.2 83 3-85 2-88 (96)
36 2a3j_A U1 small nuclear ribonu 99.8 9.2E-20 3.2E-24 142.5 11.1 82 3-84 26-111 (127)
37 2x1f_A MRNA 3'-END-processing 99.8 9.6E-20 3.3E-24 135.6 10.7 80 5-84 1-83 (96)
38 3r27_A HnRNP L, heterogeneous 99.8 1E-19 3.4E-24 135.4 10.4 79 3-84 18-98 (100)
39 3mdf_A Peptidyl-prolyl CIS-tra 99.8 9E-20 3.1E-24 132.5 10.0 79 3-81 4-85 (85)
40 2dgo_A Cytotoxic granule-assoc 99.8 3E-19 1E-23 137.5 13.2 85 3-87 12-99 (115)
41 2wbr_A GW182, gawky, LD47780P; 99.8 6.5E-20 2.2E-24 131.7 8.8 75 4-81 5-79 (89)
42 2kn4_A Immunoglobulin G-bindin 99.8 2.8E-19 9.6E-24 145.5 13.7 144 36-190 3-151 (158)
43 2dgs_A DAZ-associated protein 99.8 2.8E-19 9.6E-24 133.8 12.5 82 3-85 7-91 (99)
44 3bs9_A Nucleolysin TIA-1 isofo 99.8 8.1E-20 2.8E-24 133.4 9.3 81 3-83 3-86 (87)
45 1x5u_A Splicing factor 3B subu 99.8 2.4E-19 8.1E-24 135.7 12.2 83 3-85 12-97 (105)
46 2cqi_A Nucleolysin TIAR; RNA r 99.8 3.2E-19 1.1E-23 134.5 12.6 83 3-85 12-95 (103)
47 1nu4_A U1A RNA binding domain; 99.8 4.2E-20 1.4E-24 137.8 7.6 84 1-84 3-90 (97)
48 2dgv_A HnRNP M, heterogeneous 99.8 1.3E-19 4.4E-24 133.8 10.0 84 2-85 4-88 (92)
49 2dnm_A SRP46 splicing factor; 99.8 1.4E-19 4.9E-24 136.5 10.4 83 3-85 10-95 (103)
50 2i2y_A Fusion protein consists 99.8 2.3E-19 8E-24 144.8 12.2 138 42-189 10-148 (150)
51 3md1_A Nuclear and cytoplasmic 99.8 1.5E-19 5E-24 130.8 9.9 78 6-83 1-81 (83)
52 2cqb_A Peptidyl-prolyl CIS-tra 99.8 1.5E-19 5.2E-24 136.1 10.3 84 3-86 9-95 (102)
53 2dgx_A KIAA0430 protein; RRM d 99.8 2E-19 6.8E-24 134.0 10.8 81 4-84 7-91 (96)
54 2div_A TRNA selenocysteine ass 99.8 1.4E-19 4.8E-24 135.5 9.8 83 2-84 5-95 (99)
55 2ad9_A Polypyrimidine tract-bi 99.8 1.9E-19 6.4E-24 138.5 10.5 82 3-87 28-111 (119)
56 2e5h_A Zinc finger CCHC-type a 99.8 2.5E-19 8.7E-24 132.7 10.8 78 4-81 14-94 (94)
57 1x5s_A Cold-inducible RNA-bind 99.8 2E-19 6.8E-24 135.4 10.3 83 3-85 9-94 (102)
58 2cq0_A Eukaryotic translation 99.8 1.5E-19 5.2E-24 136.3 9.7 83 3-85 12-97 (103)
59 2d9p_A Polyadenylate-binding p 99.8 2.4E-19 8.1E-24 135.3 10.7 83 3-85 12-95 (103)
60 2do4_A Squamous cell carcinoma 99.8 3E-19 1E-23 133.9 11.0 82 3-84 14-97 (100)
61 2cqd_A RNA-binding region cont 99.8 9.7E-19 3.3E-23 134.8 14.0 82 3-85 14-98 (116)
62 2dgu_A Heterogeneous nuclear r 99.8 7.2E-19 2.5E-23 132.6 12.8 79 4-87 9-87 (103)
63 2cq1_A PTB-like protein L; RRM 99.8 3.9E-19 1.3E-23 133.3 11.1 81 3-86 12-94 (101)
64 2do0_A HnRNP M, heterogeneous 99.8 7E-19 2.4E-23 135.1 12.9 83 3-85 12-96 (114)
65 2cq3_A RNA-binding protein 9; 99.8 8.2E-19 2.8E-23 132.3 12.9 84 3-86 12-96 (103)
66 2cph_A RNA binding motif prote 99.8 5.7E-19 1.9E-23 134.0 12.0 83 3-85 12-99 (107)
67 4a8x_A RNA-binding protein wit 99.8 2.8E-19 9.6E-24 130.7 9.9 81 4-84 2-86 (88)
68 1x4d_A Matrin 3; structural ge 99.8 1.1E-19 3.6E-24 136.4 7.7 79 3-84 12-93 (102)
69 2cpz_A CUG triplet repeat RNA- 99.8 2.5E-19 8.6E-24 137.9 9.8 82 4-85 23-107 (115)
70 1p27_B RNA-binding protein 8A; 99.8 2.7E-19 9.2E-24 135.7 9.8 81 4-84 21-104 (106)
71 2cqc_A Arginine/serine-rich sp 99.8 2.4E-19 8.2E-24 133.1 9.1 80 3-82 12-94 (95)
72 1wex_A Hypothetical protein (r 99.8 3.8E-19 1.3E-23 134.2 10.2 80 3-85 12-93 (104)
73 1x4h_A RNA-binding protein 28; 99.8 7.3E-19 2.5E-23 134.3 11.8 82 4-85 13-103 (111)
74 2dgt_A RNA-binding protein 30; 99.8 8.6E-19 2.9E-23 129.4 11.7 78 3-85 7-84 (92)
75 2dnh_A Bruno-like 5, RNA bindi 99.8 6.2E-19 2.1E-23 133.4 11.2 82 4-85 13-99 (105)
76 2ywk_A Putative RNA-binding pr 99.8 2.9E-19 1E-23 132.6 9.2 80 3-82 13-94 (95)
77 2dnq_A RNA-binding protein 4B; 99.8 7.2E-19 2.5E-23 129.2 11.2 78 3-85 5-82 (90)
78 1wi8_A EIF-4B, eukaryotic tran 99.8 4.5E-19 1.5E-23 134.0 10.2 81 3-85 12-96 (104)
79 2dgp_A Bruno-like 4, RNA bindi 99.8 5.2E-19 1.8E-23 134.1 10.5 83 3-85 10-98 (106)
80 3p5t_L Cleavage and polyadenyl 99.8 6.1E-20 2.1E-24 135.1 5.2 79 7-85 2-85 (90)
81 1oo0_B CG8781-PA, drosophila Y 99.8 4.7E-19 1.6E-23 135.3 10.1 81 4-84 24-107 (110)
82 3ns6_A Eukaryotic translation 99.8 1.2E-19 4.1E-24 136.2 6.4 81 3-83 3-93 (100)
83 1x4c_A Splicing factor, argini 99.8 1.9E-18 6.6E-23 131.4 13.2 79 3-85 12-95 (108)
84 2la6_A RNA-binding protein FUS 99.8 4.3E-19 1.5E-23 132.8 9.2 79 3-81 10-99 (99)
85 1why_A Hypothetical protein ri 99.8 8.5E-19 2.9E-23 130.7 10.6 79 3-84 14-94 (97)
86 2khc_A Testis-specific RNP-typ 99.8 4.5E-19 1.6E-23 137.1 9.4 79 3-81 37-118 (118)
87 2dng_A Eukaryotic translation 99.8 9.3E-19 3.2E-23 132.0 10.8 81 3-85 12-95 (103)
88 2jvr_A Nucleolar protein 3; RN 99.8 5.3E-19 1.8E-23 134.8 9.5 80 4-84 26-106 (111)
89 3ucg_A Polyadenylate-binding p 99.8 9.3E-19 3.2E-23 128.2 10.5 79 5-84 5-86 (89)
90 2dnp_A RNA-binding protein 14; 99.8 9.3E-19 3.2E-23 128.7 10.5 78 3-85 6-83 (90)
91 2jrs_A RNA-binding protein 39; 99.8 4.4E-19 1.5E-23 135.0 9.0 81 3-83 23-106 (108)
92 3ulh_A THO complex subunit 4; 99.8 6.4E-19 2.2E-23 133.8 9.9 79 3-81 26-106 (107)
93 3s7r_A Heterogeneous nuclear r 99.8 9.6E-19 3.3E-23 127.7 10.4 77 3-80 8-87 (87)
94 2kxn_B Transformer-2 protein h 99.8 4.3E-19 1.5E-23 139.4 9.0 82 3-84 43-127 (129)
95 2nlw_A Eukaryotic translation 99.8 7.3E-19 2.5E-23 133.1 10.0 81 4-84 13-101 (105)
96 1s79_A Lupus LA protein; RRM, 99.8 4.9E-19 1.7E-23 133.4 8.9 78 4-82 9-88 (103)
97 3ex7_B RNA-binding protein 8A; 99.8 7.3E-19 2.5E-23 137.5 10.2 84 3-86 19-105 (126)
98 2xnq_A Nuclear polyadenylated 99.8 1.3E-18 4.4E-23 129.8 11.0 76 3-83 19-95 (97)
99 2cpe_A RNA-binding protein EWS 99.8 7.9E-19 2.7E-23 134.6 9.9 83 3-85 12-105 (113)
100 1u6f_A Tcubp1, RNA-binding pro 99.8 1.8E-18 6E-23 137.7 12.1 84 3-86 39-125 (139)
101 2dhg_A TRNA selenocysteine ass 99.8 9.1E-19 3.1E-23 132.2 9.9 83 3-85 6-92 (104)
102 2err_A Ataxin-2-binding protei 99.8 8.4E-19 2.9E-23 133.7 9.6 81 3-83 26-107 (109)
103 2cpi_A CCR4-NOT transcription 99.8 4.4E-19 1.5E-23 135.7 8.0 81 4-84 13-102 (111)
104 2krb_A Eukaryotic translation 99.8 3.9E-19 1.3E-23 128.1 7.3 72 6-77 1-80 (81)
105 1x4f_A Matrin 3; structural ge 99.8 2.8E-19 9.7E-24 136.0 6.8 79 3-84 22-103 (112)
106 2dis_A Unnamed protein product 99.8 2.7E-18 9.3E-23 130.7 12.2 83 3-85 5-94 (109)
107 2cpx_A Hypothetical protein FL 99.8 1.3E-18 4.4E-23 133.9 9.9 81 4-85 23-107 (115)
108 1p1t_A Cleavage stimulation fa 99.8 5E-19 1.7E-23 133.6 7.5 80 5-84 7-89 (104)
109 2rs2_A Musashi-1, RNA-binding 99.8 2.3E-18 7.9E-23 131.2 11.2 81 4-85 23-106 (109)
110 1x4g_A Nucleolysin TIAR; struc 99.8 2.4E-18 8.2E-23 131.1 11.2 80 3-85 22-101 (109)
111 2cqp_A RNA-binding protein 12; 99.8 5.5E-19 1.9E-23 131.9 7.3 80 4-83 13-95 (98)
112 1x4e_A RNA binding motif, sing 99.8 2E-19 6.8E-24 130.7 4.8 79 3-81 2-83 (85)
113 2fc9_A NCL protein; structure 99.8 1.6E-18 5.6E-23 130.2 9.9 80 4-84 13-92 (101)
114 2ytc_A PRE-mRNA-splicing facto 99.8 1.6E-18 5.5E-23 125.9 9.6 76 3-81 9-85 (85)
115 2mss_A Protein (musashi1); RNA 99.8 6.8E-19 2.3E-23 124.7 7.3 72 8-80 1-75 (75)
116 2cpj_A Non-POU domain-containi 99.8 1.6E-18 5.3E-23 129.8 9.7 78 4-84 13-90 (99)
117 2kvi_A Nuclear polyadenylated 99.8 1E-18 3.5E-23 130.0 8.6 78 3-85 7-85 (96)
118 2cq2_A Hypothetical protein LO 99.8 1.7E-18 6E-23 131.8 9.9 81 2-85 21-108 (114)
119 2cpd_A Apobec-1 stimulating pr 99.8 3.8E-18 1.3E-22 127.6 11.6 77 4-85 13-91 (99)
120 2kt5_A RNA and export factor-b 99.8 2.7E-18 9.2E-23 133.9 11.2 84 4-87 33-118 (124)
121 2e5j_A Methenyltetrahydrofolat 99.8 1.1E-18 3.8E-23 130.1 8.6 79 4-84 17-95 (97)
122 2dh8_A DAZ-associated protein 99.8 8.4E-19 2.9E-23 132.7 8.0 82 3-85 13-97 (105)
123 3n9u_C Cleavage and polyadenyl 99.8 1.5E-18 5E-23 140.8 10.0 78 5-82 54-136 (156)
124 2jvo_A Nucleolar protein 3; nu 99.8 1.6E-18 5.4E-23 131.9 9.5 77 3-84 28-104 (108)
125 3pgw_S U1-70K; protein-RNA com 99.8 5.2E-18 1.8E-22 159.5 14.6 164 13-188 4-181 (437)
126 1whx_A Hypothetical protein ri 99.8 1.4E-18 4.8E-23 132.9 8.8 78 4-84 8-85 (111)
127 1h2v_Z 20 kDa nuclear CAP bind 99.8 3.1E-18 1.1E-22 139.1 11.3 82 4-85 37-121 (156)
128 2ek1_A RNA-binding protein 12; 99.8 4.5E-19 1.5E-23 131.6 5.7 79 4-82 13-94 (95)
129 1fjc_A Nucleolin RBD2, protein 99.8 8.4E-19 2.9E-23 130.4 7.1 80 3-84 13-92 (96)
130 2la4_A Nuclear and cytoplasmic 99.8 1.3E-18 4.4E-23 130.7 8.0 76 4-82 25-100 (101)
131 2cqh_A IGF-II mRNA-binding pro 99.8 2.1E-18 7.3E-23 127.5 9.1 80 2-85 4-85 (93)
132 2j76_E EIF-4B, EIF4B, eukaryot 99.8 1.1E-18 3.7E-23 131.0 7.5 78 4-83 17-98 (100)
133 2m2b_A RNA-binding protein 10; 99.8 8.7E-19 3E-23 138.1 6.9 82 3-85 20-110 (131)
134 2dgw_A Probable RNA-binding pr 99.8 4.8E-18 1.6E-22 125.0 10.3 80 3-84 7-88 (91)
135 2kn4_A Immunoglobulin G-bindin 99.8 5.3E-18 1.8E-22 137.9 11.6 82 4-85 68-152 (158)
136 1wf1_A RNA-binding protein RAL 99.8 3.2E-18 1.1E-22 130.6 9.7 76 5-85 26-102 (110)
137 2ki2_A SS-DNA binding protein 99.8 5.7E-19 2E-23 129.7 5.3 78 7-85 2-82 (90)
138 2cq4_A RNA binding motif prote 99.8 2.3E-18 7.8E-23 132.3 8.8 79 5-84 24-105 (114)
139 1uaw_A Mouse-musashi-1; RNP-ty 99.8 1.1E-18 3.9E-23 124.1 6.6 73 7-80 1-76 (77)
140 2jwn_A Embryonic polyadenylate 99.8 4.4E-18 1.5E-22 132.7 10.6 79 5-84 35-116 (124)
141 2lea_A Serine/arginine-rich sp 99.8 1.7E-18 5.7E-23 137.2 8.1 82 4-85 45-129 (135)
142 2cqg_A TDP-43, TAR DNA-binding 99.8 8.7E-18 3E-22 126.6 11.6 81 3-85 12-95 (103)
143 1wg1_A KIAA1579 protein, homol 99.8 2E-18 6.8E-23 126.3 7.8 79 2-84 1-79 (88)
144 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 4.8E-18 1.6E-22 135.2 10.5 78 3-80 60-140 (140)
145 3egn_A RNA-binding protein 40; 99.7 1.8E-18 6E-23 138.4 7.8 82 3-84 42-131 (143)
146 1x4b_A Heterogeneous nuclear r 99.7 7.2E-18 2.5E-22 129.9 10.7 80 5-85 26-108 (116)
147 2fc8_A NCL protein; structure 99.7 2.7E-18 9.3E-23 129.1 8.0 82 3-84 12-93 (102)
148 1rk8_A CG8781-PA, CG8781-PA pr 99.7 3.9E-18 1.3E-22 139.8 9.6 83 3-85 69-154 (165)
149 1wg5_A Heterogeneous nuclear r 99.7 5.9E-18 2E-22 127.9 9.6 80 4-84 13-95 (104)
150 1x5o_A RNA binding motif, sing 99.7 7.7E-18 2.6E-22 129.3 9.6 80 4-83 23-112 (114)
151 2cpy_A RNA-binding protein 12; 99.7 4.4E-18 1.5E-22 130.8 8.0 81 3-84 12-95 (114)
152 1fj7_A Nucleolin RBD1, protein 99.7 1E-18 3.4E-23 131.3 4.2 80 4-84 15-96 (101)
153 1x5p_A Negative elongation fac 99.7 2.2E-17 7.7E-22 123.0 11.6 77 4-85 13-89 (97)
154 1iqt_A AUF1, heterogeneous nuc 99.7 2.8E-18 9.5E-23 121.5 6.2 72 8-80 1-75 (75)
155 2i2y_A Fusion protein consists 99.7 7.6E-18 2.6E-22 135.8 9.6 79 4-84 71-149 (150)
156 1wez_A HnRNP H', FTP-3, hetero 99.7 7.1E-18 2.4E-22 126.9 8.5 80 3-84 12-93 (102)
157 3beg_B Splicing factor, argini 99.7 5.7E-18 1.9E-22 130.3 8.1 80 106-188 13-93 (115)
158 2e5g_A U6 snRNA-specific termi 99.7 1.7E-17 5.8E-22 122.9 10.3 79 3-84 5-83 (94)
159 3beg_B Splicing factor, argini 99.7 7.6E-18 2.6E-22 129.6 8.4 77 4-84 14-95 (115)
160 2db1_A Heterogeneous nuclear r 99.7 5.1E-18 1.7E-22 131.2 7.1 79 4-83 15-98 (118)
161 2diu_A KIAA0430 protein; struc 99.7 1.5E-17 5.2E-22 120.5 9.0 76 3-85 5-86 (96)
162 2e44_A Insulin-like growth fac 99.7 1.9E-17 6.4E-22 123.1 9.6 79 4-83 13-92 (96)
163 2f3j_A RNA and export factor b 99.7 1.8E-17 6.1E-22 137.2 10.0 81 4-84 86-168 (177)
164 2hgl_A HNRPF protein, heteroge 99.7 8.6E-18 2.9E-22 132.8 7.5 78 4-82 42-124 (136)
165 1wel_A RNA-binding protein 12; 99.7 9.8E-18 3.4E-22 130.8 7.8 79 4-83 23-104 (124)
166 3q2s_C Cleavage and polyadenyl 99.7 1.2E-17 4E-22 144.0 8.7 79 5-83 67-150 (229)
167 1x4c_A Splicing factor, argini 99.7 1.9E-16 6.4E-21 120.4 14.3 83 103-188 9-92 (108)
168 1sjr_A Polypyrimidine tract-bi 99.7 3.8E-17 1.3E-21 132.0 10.6 78 7-85 47-126 (164)
169 2lmi_A GRSF-1, G-rich sequence 99.7 8.2E-18 2.8E-22 127.7 6.0 80 3-83 8-92 (107)
170 2hzc_A Splicing factor U2AF 65 99.7 2.9E-17 1E-21 119.6 8.7 74 2-79 2-86 (87)
171 2dnn_A RNA-binding protein 12; 99.7 4.2E-17 1.4E-21 123.9 9.8 75 6-82 16-92 (109)
172 3zzy_A Polypyrimidine tract-bi 99.7 4E-17 1.4E-21 127.1 9.8 77 7-85 29-108 (130)
173 3d2w_A TAR DNA-binding protein 99.7 5.5E-17 1.9E-21 118.9 9.4 76 3-84 8-85 (89)
174 2dha_A FLJ20171 protein; RRM d 99.7 9.8E-18 3.3E-22 130.2 5.3 78 4-82 21-104 (123)
175 1wf0_A TDP-43, TAR DNA-binding 99.7 3E-17 1E-21 120.0 7.7 80 2-85 1-80 (88)
176 2lcw_A RNA-binding protein FUS 99.5 1.2E-18 4.2E-23 134.3 0.0 83 3-85 4-97 (116)
177 2hgn_A Heterogeneous nuclear r 99.7 1.3E-17 4.6E-22 132.1 5.8 80 4-85 44-125 (139)
178 2e5i_A Heterogeneous nuclear r 99.7 8.9E-17 3E-21 124.6 10.1 77 5-84 22-103 (124)
179 2xs2_A Deleted in azoospermia- 99.7 1.8E-17 6.1E-22 124.7 5.2 79 4-84 7-87 (102)
180 2dnl_A Cytoplasmic polyadenyla 99.7 1.3E-16 4.5E-21 122.4 9.5 76 3-81 5-86 (114)
181 2hgm_A HNRPF protein, heteroge 99.7 6.9E-17 2.4E-21 125.7 7.9 77 4-82 40-120 (126)
182 2bz2_A Negative elongation fac 99.7 1.3E-16 4.4E-21 123.8 9.4 76 4-84 37-112 (121)
183 3md3_A Nuclear and cytoplasmic 99.7 2.2E-16 7.7E-21 128.5 10.0 79 3-81 84-165 (166)
184 2pe8_A Splicing factor 45; RRM 99.7 3.3E-16 1.1E-20 118.2 9.6 80 3-82 5-93 (105)
185 2j8a_A Histone-lysine N-methyl 99.7 1.6E-16 5.4E-21 121.7 7.7 78 7-84 3-97 (136)
186 2qfj_A FBP-interacting repress 99.7 3.9E-16 1.3E-20 132.9 11.1 82 4-85 123-207 (216)
187 1rk8_A CG8781-PA, CG8781-PA pr 99.7 6.3E-16 2.2E-20 126.5 11.5 134 50-189 11-152 (165)
188 4f02_A Polyadenylate-binding p 99.7 2.4E-16 8.3E-21 134.4 9.3 79 5-83 102-181 (213)
189 2cjk_A Nuclear polyadenylated 99.6 2.7E-16 9.2E-21 128.4 7.9 78 5-83 86-166 (167)
190 2g4b_A Splicing factor U2AF 65 99.6 3.8E-16 1.3E-20 128.2 8.6 77 5-81 93-172 (172)
191 1fje_B Nucleolin RBD12, protei 99.6 3.9E-16 1.3E-20 128.6 8.3 78 4-83 97-174 (175)
192 2yh0_A Splicing factor U2AF 65 99.6 6.3E-16 2.1E-20 129.8 9.7 81 4-84 112-195 (198)
193 2lea_A Serine/arginine-rich sp 99.6 5.3E-16 1.8E-20 122.7 7.7 120 45-189 4-127 (135)
194 2dit_A HIV TAT specific factor 99.6 2.5E-15 8.6E-20 114.9 11.0 81 3-84 12-103 (112)
195 2jvr_A Nucleolar protein 3; RN 99.6 1.4E-15 4.6E-20 115.9 9.4 79 107-189 26-105 (111)
196 1b7f_A Protein (SXL-lethal pro 99.6 1.3E-15 4.5E-20 124.3 9.8 77 4-80 87-168 (168)
197 3u1l_A PRE-mRNA-splicing facto 99.6 5.5E-16 1.9E-20 133.4 7.7 78 4-84 132-230 (240)
198 1l3k_A Heterogeneous nuclear r 99.6 1.4E-15 4.7E-20 127.5 10.0 81 5-86 103-186 (196)
199 3nmr_A Cugbp ELAV-like family 99.6 1.4E-15 4.6E-20 125.0 9.3 77 5-81 94-175 (175)
200 4fxv_A ELAV-like protein 1; RN 99.6 5.4E-15 1.9E-19 110.4 11.4 76 108-187 18-97 (99)
201 2voo_A Lupus LA protein; RNA-b 99.6 2.1E-15 7.2E-20 126.5 9.9 77 6-83 109-187 (193)
202 1fxl_A Paraneoplastic encephal 99.6 2.3E-15 8E-20 122.5 9.6 76 5-80 87-167 (167)
203 2fy1_A RNA-binding motif prote 99.6 1.5E-14 5.2E-19 111.2 12.7 79 107-189 5-86 (116)
204 3ex7_B RNA-binding protein 8A; 99.6 6.6E-15 2.2E-19 114.9 10.1 81 105-189 18-102 (126)
205 3v4m_A Splicing factor U2AF 65 99.6 5E-15 1.7E-19 111.7 8.7 81 2-82 1-96 (105)
206 2dnm_A SRP46 splicing factor; 99.6 1.5E-14 5.2E-19 108.6 11.3 84 103-190 7-94 (103)
207 3pgw_A U1-A; protein-RNA compl 99.6 6.2E-15 2.1E-19 130.9 10.6 75 5-81 206-281 (282)
208 4f25_A Polyadenylate-binding p 99.6 1.4E-14 4.6E-19 111.3 11.0 77 109-189 5-83 (115)
209 2wbr_A GW182, gawky, LD47780P; 99.6 1.6E-14 5.6E-19 103.6 10.2 73 108-186 6-78 (89)
210 1x4a_A Splicing factor, argini 99.6 3.3E-14 1.1E-18 107.9 12.7 83 104-190 17-100 (109)
211 1whw_A Hypothetical protein ri 99.6 3.9E-14 1.3E-18 105.5 12.7 81 107-191 6-90 (99)
212 2cqi_A Nucleolysin TIAR; RNA r 99.6 8E-14 2.7E-18 104.7 14.3 82 105-190 11-94 (103)
213 1qm9_A Polypyrimidine tract-bi 99.6 5.6E-15 1.9E-19 124.2 8.7 78 4-83 118-197 (198)
214 2cq3_A RNA-binding protein 9; 99.6 6.2E-14 2.1E-18 105.3 13.5 83 104-190 10-94 (103)
215 2dnq_A RNA-binding protein 4B; 99.6 5.2E-14 1.8E-18 103.0 12.5 77 106-190 5-81 (90)
216 3tyt_A Heterogeneous nuclear r 99.6 5.2E-15 1.8E-19 125.4 7.8 77 4-80 121-204 (205)
217 2adc_A Polypyrimidine tract-bi 99.6 1.3E-14 4.6E-19 125.0 10.4 78 4-83 149-228 (229)
218 2do0_A HnRNP M, heterogeneous 99.6 1.5E-13 5.2E-18 105.1 15.1 81 105-189 11-94 (114)
219 2dgs_A DAZ-associated protein 99.6 5E-14 1.7E-18 105.0 12.0 81 105-190 6-90 (99)
220 3s8s_A Histone-lysine N-methyl 99.5 4.1E-14 1.4E-18 107.7 11.5 78 108-189 5-86 (110)
221 2d9p_A Polyadenylate-binding p 99.5 3.8E-14 1.3E-18 106.5 11.1 81 106-190 12-94 (103)
222 2dgt_A RNA-binding protein 30; 99.5 7.9E-14 2.7E-18 102.5 12.6 77 105-189 6-82 (92)
223 2dnz_A Probable RNA-binding pr 99.5 6.2E-14 2.1E-18 103.6 12.0 79 108-190 4-86 (95)
224 1x5s_A Cold-inducible RNA-bind 99.5 5.3E-14 1.8E-18 105.4 11.8 81 105-189 8-92 (102)
225 2dgo_A Cytotoxic granule-assoc 99.5 2.5E-13 8.5E-18 104.1 15.8 82 105-190 11-96 (115)
226 1sjq_A Polypyrimidine tract-bi 99.5 2.7E-14 9.3E-19 107.0 9.9 78 106-189 13-92 (105)
227 2cq0_A Eukaryotic translation 99.5 6.3E-14 2.1E-18 105.3 12.0 82 105-190 11-96 (103)
228 2dgx_A KIAA0430 protein; RRM d 99.5 7.3E-14 2.5E-18 103.6 11.8 80 106-189 6-90 (96)
229 2e5j_A Methenyltetrahydrofolat 99.5 7.1E-14 2.4E-18 103.8 11.8 80 105-189 15-94 (97)
230 4a8x_A RNA-binding protein wit 99.5 4.1E-14 1.4E-18 102.9 10.3 77 109-189 4-85 (88)
231 2dgu_A Heterogeneous nuclear r 99.5 1.4E-13 4.6E-18 103.5 13.4 77 106-190 8-84 (103)
232 2do4_A Squamous cell carcinoma 99.5 1.4E-13 4.7E-18 102.8 13.2 80 106-189 14-96 (100)
233 2cqb_A Peptidyl-prolyl CIS-tra 99.5 5.2E-14 1.8E-18 105.5 10.5 81 106-190 9-93 (102)
234 2dgp_A Bruno-like 4, RNA bindi 99.5 9.1E-14 3.1E-18 104.9 11.9 81 105-189 9-96 (106)
235 1x5u_A Splicing factor 3B subu 99.5 9.6E-14 3.3E-18 104.6 12.0 82 104-189 10-95 (105)
236 3tht_A Alkylated DNA repair pr 99.5 2.1E-14 7.2E-19 129.9 9.8 77 2-81 14-97 (345)
237 2cqc_A Arginine/serine-rich sp 99.5 1.3E-13 4.3E-18 101.9 12.4 80 104-187 10-93 (95)
238 2cph_A RNA binding motif prote 99.5 1.1E-13 3.7E-18 104.6 12.2 82 105-190 11-98 (107)
239 1wi8_A EIF-4B, eukaryotic tran 99.5 8.2E-14 2.8E-18 104.8 11.4 81 104-190 10-95 (104)
240 2dnp_A RNA-binding protein 14; 99.5 9.7E-14 3.3E-18 101.6 11.5 76 106-189 6-81 (90)
241 2cpf_A RNA binding motif prote 99.5 7.9E-14 2.7E-18 103.7 11.1 78 108-189 4-88 (98)
242 2e5h_A Zinc finger CCHC-type a 99.5 6.6E-14 2.3E-18 103.2 10.6 81 102-186 9-93 (94)
243 1x4h_A RNA-binding protein 28; 99.5 1.4E-13 4.7E-18 104.8 12.5 81 105-189 11-101 (111)
244 2ywk_A Putative RNA-binding pr 99.5 9.3E-14 3.2E-18 102.6 11.0 79 105-187 12-93 (95)
245 3ulh_A THO complex subunit 4; 99.5 1.1E-13 3.9E-18 104.5 11.6 81 102-186 22-105 (107)
246 3bs9_A Nucleolysin TIA-1 isofo 99.5 1.1E-13 3.8E-18 100.5 11.0 78 107-188 4-85 (87)
247 1x4g_A Nucleolysin TIAR; struc 99.5 1.4E-13 4.8E-18 104.5 12.1 78 107-190 23-100 (109)
248 2cpz_A CUG triplet repeat RNA- 99.5 1.8E-13 6.1E-18 104.9 12.7 80 106-189 22-105 (115)
249 1why_A Hypothetical protein ri 99.5 1.4E-13 4.7E-18 102.2 11.6 78 106-189 14-93 (97)
250 3mdf_A Peptidyl-prolyl CIS-tra 99.5 1E-13 3.4E-18 100.2 10.5 76 107-186 5-84 (85)
251 1x4d_A Matrin 3; structural ge 99.5 4.7E-14 1.6E-18 105.5 9.0 77 107-189 13-92 (102)
252 2dgv_A HnRNP M, heterogeneous 99.5 1.3E-13 4.5E-18 101.2 11.3 80 106-189 5-86 (92)
253 2hvz_A Splicing factor, argini 99.5 8.4E-14 2.9E-18 104.1 10.3 75 110-189 1-75 (101)
254 2dng_A Eukaryotic translation 99.5 2.4E-13 8.1E-18 102.1 12.8 81 104-190 10-94 (103)
255 1u6f_A Tcubp1, RNA-binding pro 99.5 2.6E-13 9E-18 107.5 13.6 81 105-189 38-122 (139)
256 1x5t_A Splicing factor 3B subu 99.5 9.5E-14 3.3E-18 102.8 10.1 79 108-190 4-87 (96)
257 2d9o_A DNAJ (HSP40) homolog, s 99.5 1.6E-13 5.5E-18 102.2 11.3 76 6-85 10-92 (100)
258 2x1f_A MRNA 3'-END-processing 99.5 1.2E-13 4.1E-18 102.3 10.4 77 109-189 2-82 (96)
259 1jmt_A Splicing factor U2AF 35 99.5 6.3E-15 2.2E-19 111.0 3.4 70 11-80 20-103 (104)
260 1wf1_A RNA-binding protein RAL 99.5 1.9E-13 6.3E-18 104.0 11.6 75 107-189 25-100 (110)
261 2dhg_A TRNA selenocysteine ass 99.5 2.3E-13 7.8E-18 102.3 12.0 80 106-189 6-90 (104)
262 3md1_A Nuclear and cytoplasmic 99.5 2.3E-13 8E-18 97.8 11.3 76 110-189 2-81 (83)
263 3r27_A HnRNP L, heterogeneous 99.5 1.6E-13 5.5E-18 101.8 10.5 76 107-188 19-96 (100)
264 2cq1_A PTB-like protein L; RRM 99.5 2.6E-13 9E-18 101.4 11.8 78 106-189 12-91 (101)
265 1p27_B RNA-binding protein 8A; 99.5 1.6E-13 5.4E-18 103.6 10.7 79 106-188 20-102 (106)
266 2cpj_A Non-POU domain-containi 99.5 2.2E-13 7.7E-18 101.4 11.0 78 106-189 12-89 (99)
267 2div_A TRNA selenocysteine ass 99.5 3.1E-13 1.1E-17 100.6 11.8 83 107-189 7-94 (99)
268 2e44_A Insulin-like growth fac 99.5 1.8E-13 6.2E-18 101.3 10.4 81 105-189 11-92 (96)
269 2jvo_A Nucleolar protein 3; nu 99.5 1.5E-13 5.1E-18 104.2 10.1 77 106-190 28-104 (108)
270 2cpi_A CCR4-NOT transcription 99.5 1.4E-13 4.9E-18 104.9 9.9 79 107-189 13-101 (111)
271 1wex_A Hypothetical protein (r 99.5 3E-13 1E-17 101.6 11.5 78 106-189 12-91 (104)
272 2ad9_A Polypyrimidine tract-bi 99.5 2E-13 6.8E-18 104.8 10.6 78 106-189 28-107 (119)
273 2kxn_B Transformer-2 protein h 99.5 1.4E-13 4.7E-18 107.8 9.9 81 105-189 42-126 (129)
274 2la6_A RNA-binding protein FUS 99.5 3.1E-13 1E-17 100.7 11.3 79 103-185 7-97 (99)
275 3ue2_A Poly(U)-binding-splicin 99.5 6.1E-14 2.1E-18 107.8 7.6 79 4-82 18-108 (118)
276 2cpd_A Apobec-1 stimulating pr 99.5 6.7E-13 2.3E-17 98.8 13.1 76 106-189 12-89 (99)
277 2dnh_A Bruno-like 5, RNA bindi 99.5 7.4E-13 2.5E-17 99.6 13.3 82 107-189 13-97 (105)
278 2cqh_A IGF-II mRNA-binding pro 99.5 1.5E-13 5.3E-18 101.1 9.2 76 107-189 6-83 (93)
279 2cpe_A RNA-binding protein EWS 99.5 3.8E-13 1.3E-17 102.7 11.4 81 106-190 12-104 (113)
280 2fc9_A NCL protein; structure 99.5 1.7E-13 5.7E-18 102.5 9.1 80 106-189 12-91 (101)
281 2ytc_A PRE-mRNA-splicing facto 99.5 3.1E-13 1.1E-17 97.6 10.2 76 105-186 8-84 (85)
282 2kvi_A Nuclear polyadenylated 99.5 1.6E-13 5.4E-18 101.7 8.8 76 106-189 7-83 (96)
283 2lxi_A RNA-binding protein 10; 99.5 7.2E-14 2.5E-18 102.6 6.8 76 110-189 2-83 (91)
284 1sjr_A Polypyrimidine tract-bi 99.5 3.6E-13 1.2E-17 108.7 11.4 81 107-189 44-124 (164)
285 3sde_A Paraspeckle component 1 99.5 1.3E-13 4.4E-18 121.2 9.5 81 4-84 94-180 (261)
286 2kt5_A RNA and export factor-b 99.5 6.1E-13 2.1E-17 103.4 12.3 82 103-188 29-113 (124)
287 2xnq_A Nuclear polyadenylated 99.5 4.3E-13 1.5E-17 99.6 11.0 76 105-188 18-94 (97)
288 2err_A Ataxin-2-binding protei 99.5 2.2E-13 7.5E-18 103.4 9.5 79 106-188 26-106 (109)
289 2cqp_A RNA-binding protein 12; 99.5 2.3E-13 8E-18 101.1 9.3 80 105-188 11-94 (98)
290 2cpx_A Hypothetical protein FL 99.5 3.5E-13 1.2E-17 103.2 10.5 80 107-190 23-106 (115)
291 1oo0_B CG8781-PA, drosophila Y 99.5 3.6E-13 1.2E-17 102.3 10.5 81 105-189 22-106 (110)
292 2la4_A Nuclear and cytoplasmic 99.5 2.7E-13 9.4E-18 101.3 9.6 75 107-187 25-99 (101)
293 2jrs_A RNA-binding protein 39; 99.5 5.1E-13 1.8E-17 101.2 11.0 79 106-188 23-105 (108)
294 2cqd_A RNA-binding region cont 99.5 1.7E-12 5.9E-17 99.5 14.1 81 104-189 12-96 (116)
295 2lkz_A RNA-binding protein 5; 99.5 1.7E-13 5.8E-18 101.3 8.1 77 107-187 7-93 (95)
296 1h2v_Z 20 kDa nuclear CAP bind 99.5 7.6E-13 2.6E-17 107.0 12.7 79 107-189 37-119 (156)
297 2dgw_A Probable RNA-binding pr 99.5 6.8E-13 2.3E-17 97.2 11.3 79 105-189 6-87 (91)
298 1x5p_A Negative elongation fac 99.5 1.5E-12 5.2E-17 96.5 13.1 77 106-190 12-88 (97)
299 2dh8_A DAZ-associated protein 99.4 6.7E-13 2.3E-17 99.9 11.1 80 105-189 12-95 (105)
300 2khc_A Testis-specific RNP-typ 99.4 3.6E-13 1.2E-17 103.7 9.8 78 105-186 36-117 (118)
301 3lqv_A PRE-mRNA branch site pr 99.4 5.6E-13 1.9E-17 102.1 10.7 78 107-188 6-84 (115)
302 1whx_A Hypothetical protein ri 99.4 1.9E-13 6.6E-18 104.1 8.0 76 107-188 8-83 (111)
303 3p5t_L Cleavage and polyadenyl 99.4 1.5E-13 5E-18 100.6 6.8 76 110-189 2-83 (90)
304 3s7r_A Heterogeneous nuclear r 99.4 7.5E-13 2.6E-17 96.0 10.4 75 106-185 8-86 (87)
305 1x4e_A RNA binding motif, sing 99.4 7.4E-14 2.5E-18 101.0 5.0 68 107-174 3-74 (85)
306 3ucg_A Polyadenylate-binding p 99.4 8.6E-13 3E-17 96.1 10.7 76 109-189 6-85 (89)
307 3s6e_A RNA-binding protein 39; 99.4 4.1E-13 1.4E-17 102.5 9.2 79 3-82 4-92 (114)
308 1s79_A Lupus LA protein; RRM, 99.4 3.8E-13 1.3E-17 101.0 8.8 73 108-185 10-85 (103)
309 2a3j_A U1 small nuclear ribonu 99.4 6.7E-13 2.3E-17 103.4 10.3 80 106-189 26-110 (127)
310 1wg5_A Heterogeneous nuclear r 99.4 4.9E-13 1.7E-17 100.6 9.0 79 104-187 10-92 (104)
311 2jwn_A Embryonic polyadenylate 99.4 1.1E-12 3.9E-17 101.8 11.2 76 109-189 36-115 (124)
312 2ek1_A RNA-binding protein 12; 99.4 2.7E-13 9.3E-18 100.1 7.2 77 107-187 13-93 (95)
313 1wez_A HnRNP H', FTP-3, hetero 99.4 8.4E-13 2.9E-17 98.9 9.8 77 105-187 11-90 (102)
314 2e5g_A U6 snRNA-specific termi 99.4 1.4E-12 4.9E-17 96.1 10.6 73 108-187 7-80 (94)
315 2dnn_A RNA-binding protein 12; 99.4 6.7E-13 2.3E-17 100.6 8.9 76 106-187 13-91 (109)
316 2db1_A Heterogeneous nuclear r 99.4 8.4E-13 2.9E-17 101.7 9.6 79 104-187 12-96 (118)
317 1nu4_A U1A RNA binding domain; 99.4 5.2E-13 1.8E-17 98.9 8.1 80 106-189 5-89 (97)
318 2cqg_A TDP-43, TAR DNA-binding 99.4 5.1E-12 1.7E-16 94.7 13.6 78 106-189 12-93 (103)
319 2krb_A Eukaryotic translation 99.4 2.3E-13 7.7E-18 97.5 5.7 66 110-175 2-75 (81)
320 2e5i_A Heterogeneous nuclear r 99.4 3.1E-12 1E-16 99.0 12.4 77 109-189 25-102 (124)
321 1x4b_A Heterogeneous nuclear r 99.4 1.2E-12 4.3E-17 100.3 10.2 78 108-190 26-107 (116)
322 1x4f_A Matrin 3; structural ge 99.4 3.2E-13 1.1E-17 102.5 6.7 78 106-189 22-102 (112)
323 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.4 1.6E-12 5.6E-17 102.9 11.2 79 103-185 57-139 (140)
324 3n9u_C Cleavage and polyadenyl 99.4 1.8E-12 6E-17 104.8 11.2 76 108-187 54-135 (156)
325 1p1t_A Cleavage stimulation fa 99.4 1.2E-12 4E-17 98.3 9.5 78 108-189 7-88 (104)
326 2nlw_A Eukaryotic translation 99.4 1.4E-12 4.7E-17 98.3 9.8 77 108-188 14-99 (105)
327 2hgl_A HNRPF protein, heteroge 99.4 7.6E-13 2.6E-17 104.3 8.5 78 104-186 39-122 (136)
328 2hgn_A Heterogeneous nuclear r 99.4 9.6E-14 3.3E-18 109.9 3.3 118 46-188 2-122 (139)
329 2rs2_A Musashi-1, RNA-binding 99.4 1.4E-12 4.9E-17 98.9 9.7 79 107-190 23-105 (109)
330 2m2b_A RNA-binding protein 10; 99.4 7.5E-13 2.6E-17 103.9 8.2 78 107-189 21-108 (131)
331 2diu_A KIAA0430 protein; struc 99.4 2E-12 7E-17 93.6 9.7 74 107-190 7-85 (96)
332 1fjc_A Nucleolin RBD2, protein 99.4 6.7E-13 2.3E-17 98.2 7.5 79 106-189 13-91 (96)
333 2cq4_A RNA binding motif prote 99.4 1.8E-12 6.1E-17 99.1 10.0 76 108-188 24-103 (114)
334 1x5o_A RNA binding motif, sing 99.4 5.1E-12 1.8E-16 96.5 12.5 81 107-187 23-110 (114)
335 2mss_A Protein (musashi1); RNA 99.4 5.2E-13 1.8E-17 94.1 6.3 69 111-184 1-73 (75)
336 3zzy_A Polypyrimidine tract-bi 99.4 2.9E-12 9.9E-17 99.6 11.0 80 107-189 26-106 (130)
337 2cq2_A Hypothetical protein LO 99.4 1.1E-12 3.6E-17 99.8 8.2 79 107-187 23-104 (114)
338 2dis_A Unnamed protein product 99.4 2.8E-12 9.5E-17 97.1 10.4 79 107-189 6-92 (109)
339 2hzc_A Splicing factor U2AF 65 99.4 1.9E-12 6.5E-17 93.8 9.0 71 107-184 4-85 (87)
340 1uaw_A Mouse-musashi-1; RNP-ty 99.4 6E-13 2.1E-17 94.2 6.0 69 111-184 2-74 (77)
341 1wg1_A KIAA1579 protein, homol 99.4 1.1E-12 3.7E-17 95.5 7.3 75 108-189 4-78 (88)
342 3ns6_A Eukaryotic translation 99.4 1.3E-12 4.5E-17 97.5 7.8 66 109-174 6-81 (100)
343 2j76_E EIF-4B, EIF4B, eukaryot 99.4 3.5E-13 1.2E-17 100.7 4.6 78 105-188 15-97 (100)
344 2cpy_A RNA-binding protein 12; 99.4 1.4E-12 4.8E-17 99.8 8.0 78 106-188 12-93 (114)
345 2fc8_A NCL protein; structure 99.4 5.9E-12 2E-16 94.1 11.3 79 105-190 11-93 (102)
346 2f3j_A RNA and export factor b 99.4 4.5E-12 1.5E-16 104.7 11.0 78 105-186 84-164 (177)
347 2ki2_A SS-DNA binding protein 99.3 6.2E-13 2.1E-17 97.1 4.7 74 110-188 2-79 (90)
348 1fj7_A Nucleolin RBD1, protein 99.3 5.4E-12 1.9E-16 94.2 9.7 77 107-189 15-95 (101)
349 2bz2_A Negative elongation fac 99.3 4.6E-12 1.6E-16 97.9 9.5 76 106-189 36-111 (121)
350 2lmi_A GRSF-1, G-rich sequence 99.3 9.4E-13 3.2E-17 99.6 5.3 76 106-186 8-89 (107)
351 1wel_A RNA-binding protein 12; 99.3 2.7E-12 9.3E-17 99.7 7.7 77 105-186 21-101 (124)
352 3egn_A RNA-binding protein 40; 99.3 6.1E-12 2.1E-16 100.1 9.7 79 107-189 43-130 (143)
353 3d2w_A TAR DNA-binding protein 99.3 6.8E-12 2.3E-16 91.5 9.1 76 106-188 8-83 (89)
354 2dha_A FLJ20171 protein; RRM d 99.3 3E-12 1E-16 99.1 6.9 75 107-186 21-102 (123)
355 3q2s_C Cleavage and polyadenyl 99.3 6E-12 2.1E-16 108.2 9.5 76 108-187 67-148 (229)
356 1iqt_A AUF1, heterogeneous nuc 99.3 1.8E-12 6.1E-17 91.2 4.9 64 111-175 1-68 (75)
357 2xs2_A Deleted in azoospermia- 99.3 6.7E-12 2.3E-16 93.9 7.5 74 107-186 7-83 (102)
358 2lcw_A RNA-binding protein FUS 98.9 3E-13 1E-17 103.8 0.0 79 107-189 5-95 (116)
359 1wf0_A TDP-43, TAR DNA-binding 99.3 4.7E-12 1.6E-16 92.1 6.4 73 108-189 4-78 (88)
360 2hgm_A HNRPF protein, heteroge 99.3 5.2E-12 1.8E-16 98.1 6.7 75 105-185 38-117 (126)
361 2dit_A HIV TAT specific factor 99.3 7.2E-11 2.4E-15 89.9 11.9 81 106-190 12-103 (112)
362 2j8a_A Histone-lysine N-methyl 99.2 3.2E-11 1.1E-15 92.4 9.2 76 110-189 3-96 (136)
363 1owx_A Lupus LA protein, SS-B, 99.2 3.6E-11 1.2E-15 91.9 9.5 76 4-82 16-95 (121)
364 2dnl_A Cytoplasmic polyadenyla 99.2 1.7E-11 6E-16 93.6 7.6 60 107-167 6-72 (114)
365 2pe8_A Splicing factor 45; RRM 99.2 8.3E-11 2.8E-15 88.4 10.3 76 108-187 7-92 (105)
366 2voo_A Lupus LA protein; RNA-b 99.2 2.5E-10 8.5E-15 95.5 14.0 118 54-187 63-185 (193)
367 2dnr_A Synaptojanin-1; RRM dom 99.2 8E-11 2.7E-15 84.5 8.0 73 4-82 5-85 (91)
368 3u1l_A PRE-mRNA-splicing facto 99.1 8.7E-11 3E-15 100.9 8.2 79 105-189 130-229 (240)
369 3v4m_A Splicing factor U2AF 65 99.1 3.8E-10 1.3E-14 84.7 7.8 74 109-186 5-94 (105)
370 3s6e_A RNA-binding protein 39; 99.0 8.3E-10 2.8E-14 84.0 9.2 75 108-186 6-90 (114)
371 3ue2_A Poly(U)-binding-splicin 99.0 6.8E-10 2.3E-14 85.1 8.8 75 108-186 19-106 (118)
372 3tht_A Alkylated DNA repair pr 99.0 4.3E-10 1.5E-14 101.7 7.6 66 106-173 15-82 (345)
373 2d9o_A DNAJ (HSP40) homolog, s 99.0 9.7E-09 3.3E-13 76.2 11.9 64 119-189 27-90 (100)
374 1jmt_A Splicing factor U2AF 35 99.0 3.4E-10 1.1E-14 84.9 3.8 68 114-185 20-102 (104)
375 1ufw_A Synaptojanin 2; RNP dom 98.9 1.3E-09 4.4E-14 78.6 6.4 72 4-81 13-93 (95)
376 3dxb_A Thioredoxin N-terminall 98.9 2.7E-09 9.2E-14 91.1 7.6 65 18-82 141-212 (222)
377 1owx_A Lupus LA protein, SS-B, 98.9 6.6E-09 2.2E-13 79.3 8.6 70 104-175 13-86 (121)
378 2dnr_A Synaptojanin-1; RRM dom 98.7 7.2E-08 2.5E-12 69.1 7.6 73 108-189 6-86 (91)
379 2l9w_A U4/U6 snRNA-associated- 98.6 3.6E-07 1.2E-11 67.2 8.8 72 5-79 20-96 (117)
380 1ufw_A Synaptojanin 2; RNP dom 98.5 3.8E-07 1.3E-11 65.7 8.1 72 107-187 13-93 (95)
381 2dhx_A Poly (ADP-ribose) polym 98.4 4.5E-06 1.6E-10 60.8 10.7 90 3-122 5-99 (104)
382 3dxb_A Thioredoxin N-terminall 98.2 2.1E-06 7.2E-11 72.9 7.5 61 122-186 142-210 (222)
383 1wey_A Calcipressin 1; structu 98.1 5.6E-06 1.9E-10 60.6 6.6 78 3-83 2-84 (104)
384 2l9w_A U4/U6 snRNA-associated- 98.0 6.3E-05 2.1E-09 55.3 9.3 71 108-184 20-95 (117)
385 1wwh_A Nucleoporin 35, nucleop 97.6 0.00026 8.9E-09 53.2 8.7 72 5-81 23-95 (119)
386 1whv_A Poly(A)-specific ribonu 97.6 0.0002 6.7E-09 51.6 6.5 54 6-65 16-69 (100)
387 1uw4_A UPF3X; nonsense mediate 97.5 0.00066 2.2E-08 48.7 9.0 76 7-82 2-87 (91)
388 3ctr_A Poly(A)-specific ribonu 97.3 0.00019 6.4E-09 51.8 3.9 54 7-66 7-60 (101)
389 3p3d_A Nucleoporin 53; structu 97.1 0.0013 4.6E-08 50.1 6.9 77 3-81 4-97 (132)
390 1uw4_A UPF3X; nonsense mediate 97.0 0.005 1.7E-07 44.1 9.1 68 110-177 2-75 (91)
391 1wey_A Calcipressin 1; structu 96.9 0.0023 7.8E-08 46.8 6.4 70 110-185 6-80 (104)
392 1wwh_A Nucleoporin 35, nucleop 96.7 0.0058 2E-07 45.8 7.6 73 106-185 21-93 (119)
393 1whv_A Poly(A)-specific ribonu 96.7 0.011 3.6E-07 42.6 8.3 55 109-168 16-70 (100)
394 2l08_A Regulator of nonsense t 96.7 0.0051 1.8E-07 44.4 6.7 76 5-81 8-94 (97)
395 2dhx_A Poly (ADP-ribose) polym 96.5 0.022 7.4E-07 41.4 9.2 71 108-187 7-82 (104)
396 3pq1_A Poly(A) RNA polymerase; 96.5 0.0016 5.4E-08 60.9 3.6 56 5-63 52-107 (464)
397 3ctr_A Poly(A)-specific ribonu 95.5 0.017 5.9E-07 41.6 4.6 53 111-168 8-60 (101)
398 2l08_A Regulator of nonsense t 95.2 0.025 8.4E-07 40.8 4.6 69 110-178 10-84 (97)
399 3pq1_A Poly(A) RNA polymerase; 93.9 0.038 1.3E-06 51.5 3.8 55 109-165 53-107 (464)
400 3p3d_A Nucleoporin 53; structu 93.7 0.18 6.2E-06 38.3 6.5 73 109-187 7-97 (132)
401 3d45_A Poly(A)-specific ribonu 91.9 0.33 1.1E-05 46.0 7.2 54 7-66 441-494 (507)
402 2g0c_A ATP-dependent RNA helic 79.4 5.5 0.00019 26.6 6.1 68 8-81 2-75 (76)
403 3d45_A Poly(A)-specific ribonu 75.7 7.4 0.00025 36.7 7.8 56 109-169 440-495 (507)
404 4eyt_A Telomerase associated p 65.8 31 0.0011 24.0 8.2 69 4-79 10-78 (129)
405 4e8u_A Putative uncharacterize 52.4 20 0.0007 28.3 4.8 50 8-57 14-74 (172)
406 3lpe_A Putative transcription 52.3 50 0.0017 23.0 6.5 34 32-67 39-72 (92)
407 3ts2_A Protein LIN-28 homolog 49.7 2.9 9.9E-05 32.5 -0.4 29 21-54 2-30 (148)
408 3j21_T 50S ribosomal protein L 44.3 67 0.0023 22.2 5.9 56 8-63 24-81 (86)
409 4eyt_A Telomerase associated p 40.9 88 0.003 21.7 7.9 57 108-168 11-67 (129)
410 3h7h_B Transcription elongatio 34.0 96 0.0033 22.2 5.7 36 32-69 40-75 (106)
411 2e5p_A Protein PHF1, PHD finge 31.7 23 0.0008 23.1 1.8 20 31-55 28-47 (68)
412 1vq8_S 50S ribosomal protein L 30.4 1.1E+02 0.0036 21.1 5.1 55 8-62 23-79 (85)
413 2eqj_A Metal-response element- 27.8 30 0.001 22.6 1.8 11 45-55 41-51 (66)
414 2od0_A Hypothetical protein VP 27.6 55 0.0019 23.2 3.5 27 18-49 4-30 (105)
415 3fut_A Dimethyladenosine trans 25.8 51 0.0018 28.0 3.5 32 6-38 110-141 (271)
416 3fry_A Probable copper-exporti 24.3 1.4E+02 0.0047 18.8 5.4 54 110-166 7-60 (73)
417 2m0o_A PHD finger protein 1; t 23.8 39 0.0013 22.7 1.8 20 31-55 45-64 (79)
418 4e8u_A Putative uncharacterize 23.4 1.8E+02 0.0062 22.8 6.0 48 110-158 13-73 (172)
419 3lpe_A Putative transcription 22.4 1.9E+02 0.0066 19.8 6.4 25 145-169 48-72 (92)
420 2e5q_A PHD finger protein 19; 21.6 19 0.00064 23.2 -0.1 12 44-55 34-45 (63)
421 4bby_A Alkyldihydroxyacetoneph 21.4 60 0.0021 31.5 3.4 54 12-65 349-408 (658)
422 3uzu_A Ribosomal RNA small sub 20.3 35 0.0012 29.2 1.3 32 7-38 115-146 (279)
No 1
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=5.4e-33 Score=238.29 Aligned_cols=164 Identities=24% Similarity=0.338 Sum_probs=144.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcc---CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEE
Q 020783 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (321)
Q Consensus 3 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~---~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~ 79 (321)
+.|.++|||+|||+++|+++|+++|++||+|.+|.|+. ++.++|||||+|.+.++|++|+..||+..+.|+.|.+.+
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~ 91 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 91 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccc
Confidence 45789999999999999999999999999999999953 578899999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCCC--cEEEEEeCCH
Q 020783 80 AHGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG--MTGIVDYTSY 157 (321)
Q Consensus 80 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~--g~afV~f~~~ 157 (321)
+....... .....+|||+|||..+++++|.++|.+||.|..+.|..+.++ |||||+|.+.
T Consensus 92 ~~~~~~~~------------------~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~ 153 (213)
T 4f02_A 92 SQRDPSLR------------------KSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQ 153 (213)
T ss_dssp CCCCTHHH------------------HHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSH
T ss_pred cccccccc------------------ccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCH
Confidence 76543211 122358999999999999999999999999999999987643 6999999999
Q ss_pred HHHHHHHHHhCCCcccCccceeEEEEEecCC
Q 020783 158 DDMKYAIRKLDRSEFRNAFSRSYVRVREYDS 188 (321)
Q Consensus 158 ~~a~~A~~~l~g~~~~g~~~~~~i~v~~~~~ 188 (321)
++|++|++.|||..+.| +.|.|.....
T Consensus 154 ~~a~~Ai~~lng~~~~g----~~i~V~~a~~ 180 (213)
T 4f02_A 154 EAAERAIEKMNGMLLND----RKVFVGRFKS 180 (213)
T ss_dssp HHHHHHHHHHTTCEETT----EECEEEECCC
T ss_pred HHHHHHHHHhCCCEECC----EEEEEEEcCC
Confidence 99999999999999999 7888877654
No 2
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.98 E-value=2.9e-31 Score=217.62 Aligned_cols=159 Identities=23% Similarity=0.364 Sum_probs=141.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcc--CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEccCCC
Q 020783 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGR 84 (321)
Q Consensus 7 ~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~--~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a~~~~ 84 (321)
++|||+|||+++|+++|+++|++||.|.+|.+.. ++.++|||||+|.+.++|.+|+..|||..+.|+.|.|.++....
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 80 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ 80 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence 5899999999999999999999999999999954 46788999999999999999999999999999999999987544
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCC----CcEEEEEeCCHHHH
Q 020783 85 RHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDM 160 (321)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~----~g~afV~f~~~~~a 160 (321)
.. ......+|+|+|||..+++++|.++|.+||.|..+.+..+.. .|+|||+|.+.++|
T Consensus 81 ~~------------------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A 142 (166)
T 3md3_A 81 QS------------------SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDA 142 (166)
T ss_dssp CC------------------CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHH
T ss_pred CC------------------CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHH
Confidence 21 224567999999999999999999999999999999998743 35999999999999
Q ss_pred HHHHHHhCCCcccCccceeEEEEEecC
Q 020783 161 KYAIRKLDRSEFRNAFSRSYVRVREYD 187 (321)
Q Consensus 161 ~~A~~~l~g~~~~g~~~~~~i~v~~~~ 187 (321)
.+|+..|||..+.| +.|.+....
T Consensus 143 ~~A~~~l~g~~~~g----~~i~v~~a~ 165 (166)
T 3md3_A 143 QNAMDSMQGQDLNG----RPLRINWAA 165 (166)
T ss_dssp HHHHHHHTTCEETT----EECEEEESC
T ss_pred HHHHHHhCCCccCC----cEEEEEecC
Confidence 99999999999999 777776643
No 3
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.98 E-value=3.9e-31 Score=225.12 Aligned_cols=179 Identities=15% Similarity=0.202 Sum_probs=143.3
Q ss_pred CCCCeEEEcCCC-CCCCHHHHHHHHhccCCeeEEEEccCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEccC
Q 020783 4 RSSRTLYVGNLP-GDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (321)
Q Consensus 4 ~~~~~l~V~nLp-~~~te~~L~~~F~~~G~I~~v~l~~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a~~ 82 (321)
-++++|||+||| +.+|+++|+++|++||.|.+|++..+ .+|||||+|.+.++|++|++.|||..+.|+.|.|.+++.
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~--~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~ 79 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS--KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQ 79 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT--STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC--CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccC
Confidence 478999999999 79999999999999999999999754 489999999999999999999999999999999999975
Q ss_pred CCCCCCCC---CCC----CCCCCCC--C--------CCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCc--EEEEEEE
Q 020783 83 GRRHSSSM---DRY----SSYSSGG--S--------RGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDV--CFSQVFR 143 (321)
Q Consensus 83 ~~~~~~~~---~~~----~~~~~~~--~--------~~~~~~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i--~~~~i~~ 143 (321)
....+... ... ..+.+.. . .....++..+|||+|||..+++++|+++|.+||.| ..+.+..
T Consensus 80 ~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~ 159 (205)
T 3tyt_A 80 PAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFS 159 (205)
T ss_dssp SCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECS
T ss_pred CccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEc
Confidence 54321100 000 0010000 0 00112456789999999999999999999999999 8888887
Q ss_pred cCC--CcEEEEEeCCHHHHHHHHHHhCCCcccCccceeEEEEE
Q 020783 144 DRG--GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVR 184 (321)
Q Consensus 144 ~~~--~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~i~v~ 184 (321)
+.. .|+|||+|.+.++|.+|+..|||..+.|......+.++
T Consensus 160 ~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk 202 (205)
T 3tyt_A 160 GKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLK 202 (205)
T ss_dssp CCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECE
T ss_pred CCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEE
Confidence 642 37999999999999999999999999997655555544
No 4
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.98 E-value=6.9e-31 Score=215.57 Aligned_cols=152 Identities=24% Similarity=0.370 Sum_probs=137.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcc---CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEcc
Q 020783 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (321)
Q Consensus 5 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~---~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a~ 81 (321)
++++|||+|||+++|+++|+++|++||.|..+.+.. ++.++|||||+|.+.++|++|+..|||..+.|+.|.|.++.
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 578999999999999999999999999999999943 67788999999999999999999999999999999999987
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCC----CcEEEEEeCCH
Q 020783 82 GGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSY 157 (321)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~----~g~afV~f~~~ 157 (321)
+... .....+|+|+|||..+++++|+++|.+||.|..+.+..+.. .|+|||+|.+.
T Consensus 81 ~~~~--------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~ 140 (167)
T 1fxl_A 81 PSSA--------------------SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKR 140 (167)
T ss_dssp CCCG--------------------GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSH
T ss_pred CCcc--------------------cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCH
Confidence 5431 12346899999999999999999999999999999998753 36999999999
Q ss_pred HHHHHHHHHhCCCcccCcc
Q 020783 158 DDMKYAIRKLDRSEFRNAF 176 (321)
Q Consensus 158 ~~a~~A~~~l~g~~~~g~~ 176 (321)
++|.+|++.|||..+.|+.
T Consensus 141 ~~A~~A~~~l~g~~~~g~~ 159 (167)
T 1fxl_A 141 IEAEEAIKGLNGQKPSGAT 159 (167)
T ss_dssp HHHHHHHHHHTTCCCTTCS
T ss_pred HHHHHHHHHhcCCccCCCc
Confidence 9999999999999999954
No 5
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.98 E-value=6.4e-31 Score=216.21 Aligned_cols=151 Identities=27% Similarity=0.386 Sum_probs=137.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcc---CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEcc
Q 020783 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (321)
Q Consensus 5 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~---~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a~ 81 (321)
++++|||+|||+++|+++|+++|++||.|..|.+.. ++.++|||||+|.+.++|++|+..|||..+.|+.|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 689999999999999999999999999999999953 67789999999999999999999999999999999999987
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCCC----cEEEEEeCCH
Q 020783 82 GGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSY 157 (321)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~----g~afV~f~~~ 157 (321)
.... .....+|+|+|||..+++++|+++|.+||.|..+.+..+... |+|||+|.+.
T Consensus 82 ~~~~--------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~ 141 (168)
T 1b7f_A 82 PGGE--------------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKR 141 (168)
T ss_dssp CCSS--------------------TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSH
T ss_pred CCcc--------------------cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCH
Confidence 5432 133468999999999999999999999999999999987632 6999999999
Q ss_pred HHHHHHHHHhCCCcccCc
Q 020783 158 DDMKYAIRKLDRSEFRNA 175 (321)
Q Consensus 158 ~~a~~A~~~l~g~~~~g~ 175 (321)
++|.+|++.|||..+.|.
T Consensus 142 ~~A~~A~~~l~g~~~~g~ 159 (168)
T 1b7f_A 142 EEAQEAISALNNVIPEGG 159 (168)
T ss_dssp HHHHHHHHHHTTCCCTTC
T ss_pred HHHHHHHHHhcCCEecCC
Confidence 999999999999999773
No 6
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.97 E-value=7.4e-31 Score=221.39 Aligned_cols=166 Identities=17% Similarity=0.296 Sum_probs=139.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcc---CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEc
Q 020783 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (321)
Q Consensus 4 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~---~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a 80 (321)
.+.++|||+|||+++|+++|+++|++||.|.+|.++. ++.++|||||+|.+.++|++|+. +++..+.|+.|.|.++
T Consensus 11 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~l~v~~~ 89 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN-ARPHKVDGRVVEPKRA 89 (196)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH-TCSCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHh-cCCCEECCEEeeeecc
Confidence 4678999999999999999999999999999999954 57789999999999999999998 5999999999999998
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCC----CcEEEEEeCC
Q 020783 81 HGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTS 156 (321)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~----~g~afV~f~~ 156 (321)
........ ........+|||+|||..+++++|.++|.+||.|..+.+..+.. .|||||+|.+
T Consensus 90 ~~~~~~~~--------------~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~ 155 (196)
T 1l3k_A 90 VSREDSQR--------------PGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDD 155 (196)
T ss_dssp CC-------------------------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESS
T ss_pred cCcccccc--------------cccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECC
Confidence 76542211 11223457999999999999999999999999999999998753 3699999999
Q ss_pred HHHHHHHHHHhCCCcccCccceeEEEEEecCCC
Q 020783 157 YDDMKYAIRKLDRSEFRNAFSRSYVRVREYDSR 189 (321)
Q Consensus 157 ~~~a~~A~~~l~g~~~~g~~~~~~i~v~~~~~~ 189 (321)
.++|.+|+.. ++..+.| ..|.|......
T Consensus 156 ~~~A~~A~~~-~~~~~~G----~~i~v~~a~~k 183 (196)
T 1l3k_A 156 HDSVDKIVIQ-KYHTVNG----HNCEVRKALSK 183 (196)
T ss_dssp HHHHHHHHHC-SCCEETT----EECEEEECC--
T ss_pred HHHHHHHHHh-CCcEECC----EEEEEEecCCh
Confidence 9999999976 7999999 77888776554
No 7
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.97 E-value=3.8e-30 Score=229.63 Aligned_cols=180 Identities=18% Similarity=0.267 Sum_probs=146.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHH----HHHhccCCeeEEEEccCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEE
Q 020783 2 SSRSSRTLYVGNLPGDTRMREVE----DLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRV 77 (321)
Q Consensus 2 ~~~~~~~l~V~nLp~~~te~~L~----~~F~~~G~I~~v~l~~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V 77 (321)
+..++++|||+|||+++|+++|+ ++|++||.|..|.+..++.++|||||+|.+.++|++|++.|||..|.|+.|.|
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 84 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 84 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEE
Confidence 35889999999999999999966 99999999999999889999999999999999999999999999999999999
Q ss_pred EEccCCCCCCCCCCCC-----------------------------------CCCC-------------------------
Q 020783 78 ELAHGGRRHSSSMDRY-----------------------------------SSYS------------------------- 97 (321)
Q Consensus 78 ~~a~~~~~~~~~~~~~-----------------------------------~~~~------------------------- 97 (321)
.++............. ...+
T Consensus 85 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 164 (282)
T 3pgw_A 85 QYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYM 164 (282)
T ss_pred EEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCCCCC
Confidence 9997644210000000 0000
Q ss_pred -------CCC-C-----------------------CCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCC
Q 020783 98 -------SGG-S-----------------------RGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG 146 (321)
Q Consensus 98 -------~~~-~-----------------------~~~~~~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~ 146 (321)
..+ . .........+|||+|||..+++++|+++|.+||.|..+.+..+.
T Consensus 165 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~- 243 (282)
T 3pgw_A 165 PPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR- 243 (282)
T ss_pred CCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-
Confidence 000 0 00112246789999999999999999999999999999999665
Q ss_pred CcEEEEEeCCHHHHHHHHHHhCCCccc-CccceeEEEEEec
Q 020783 147 GMTGIVDYTSYDDMKYAIRKLDRSEFR-NAFSRSYVRVREY 186 (321)
Q Consensus 147 ~g~afV~f~~~~~a~~A~~~l~g~~~~-g~~~~~~i~v~~~ 186 (321)
.|||||+|.+.++|.+|++.|||..+. | ..|.|...
T Consensus 244 ~g~afV~f~~~~~A~~A~~~l~g~~~~~g----~~l~v~~a 280 (282)
T 3pgw_A 244 HDIAFVEFDNEVQAGAARDALQGFKITQN----NAMKISFA 280 (282)
T ss_pred CcEEEEEeCCHHHHHHHHHHcCCcEeCCC----CEEEEEEe
Confidence 469999999999999999999999999 8 67777654
No 8
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.97 E-value=7.5e-30 Score=215.54 Aligned_cols=178 Identities=22% Similarity=0.363 Sum_probs=144.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcc----C-------CeeEEEEccCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCC
Q 020783 4 RSSRTLYVGNLPGDTRMREVEDLFYKY----G-------PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDG 72 (321)
Q Consensus 4 ~~~~~l~V~nLp~~~te~~L~~~F~~~----G-------~I~~v~l~~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g 72 (321)
..+++|||+|||+++|+++|+++|++| | .|..+.+ +.++|||||+|.+.++|++|+ .|||..|.|
T Consensus 2 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~---~~~~g~afV~F~~~~~A~~Al-~l~g~~~~g 77 (198)
T 2yh0_A 2 AMARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI---NQDKNFAFLEFRSVDETTQAM-AFDGIIFQG 77 (198)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE---ETTTTEEEEEESCSHHHHHHG-GGTTEEETT
T ss_pred CceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe---cCCCCEEEEEeCCHHHHHHHH-HhcCCEEcC
Confidence 578999999999999999999999999 5 5666665 356899999999999999999 799999999
Q ss_pred ceEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCC----Cc
Q 020783 73 YRLRVELAHGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GM 148 (321)
Q Consensus 73 ~~i~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~----~g 148 (321)
+.|.|.++..................+...........+|+|+|||..+++++|+++|.+||.|..+.+..+.. .|
T Consensus 78 ~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g 157 (198)
T 2yh0_A 78 QSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKG 157 (198)
T ss_dssp EEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEE
T ss_pred ceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcce
Confidence 99999998765433322111111111112222335678999999999999999999999999999999998853 36
Q ss_pred EEEEEeCCHHHHHHHHHHhCCCcccCccceeEEEEEecCCC
Q 020783 149 TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDSR 189 (321)
Q Consensus 149 ~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~i~v~~~~~~ 189 (321)
||||+|.+.++|..|++.|||..+.| +.|.+......
T Consensus 158 ~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~v~~a~~~ 194 (198)
T 2yh0_A 158 YAFCEYVDINVTDQAIAGLNGMQLGD----KKLLVQRASVG 194 (198)
T ss_dssp EEEEEESSSSHHHHHHHHHTTCEETT----EECEEEESCCC
T ss_pred EEEEEECCHHHHHHHHHHcCCCEECC----EEEEEEECCCC
Confidence 99999999999999999999999999 78888876554
No 9
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.97 E-value=6.8e-30 Score=218.73 Aligned_cols=172 Identities=20% Similarity=0.305 Sum_probs=143.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcc---CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEcc
Q 020783 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (321)
Q Consensus 5 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~---~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a~ 81 (321)
+.++|||+|||+++|+++|+++|++||.|..|.+.. ++.++|||||+|.+.++|++|++.|||..|.|+.|.|.++.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 458999999999999999999999999999999954 57889999999999999999999999999999999998876
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCC----CcEEEEEeCCH
Q 020783 82 GGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSY 157 (321)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~----~g~afV~f~~~ 157 (321)
.......... ..........+|||+|||..+++++|+++|.+||.|..+.+..+.. .|||||+|.+.
T Consensus 107 ~~~~~~~~~~---------~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~ 177 (216)
T 2qfj_A 107 NIGQAQPIID---------QLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKA 177 (216)
T ss_dssp CCGGGHHHHH---------HHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSH
T ss_pred Cccccchhhh---------hhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCH
Confidence 4431100000 0000113456999999999999999999999999999999998853 36999999999
Q ss_pred HHHHHHHHHhCCCcccCccceeEEEEEecCCC
Q 020783 158 DDMKYAIRKLDRSEFRNAFSRSYVRVREYDSR 189 (321)
Q Consensus 158 ~~a~~A~~~l~g~~~~g~~~~~~i~v~~~~~~ 189 (321)
++|.+|++.|||..+.| +.|.|......
T Consensus 178 ~~A~~A~~~l~g~~~~g----~~i~V~~a~~~ 205 (216)
T 2qfj_A 178 QSSQDAVSSMNLFDLGG----QYLRVGKAVTP 205 (216)
T ss_dssp HHHHHHHHHHTTCBCSS----SBCEEEECSSC
T ss_pred HHHHHHHHHccCCEeCC----cEEEEEEecCC
Confidence 99999999999999999 77888776554
No 10
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.97 E-value=6.1e-30 Score=211.62 Aligned_cols=161 Identities=16% Similarity=0.294 Sum_probs=136.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcc---CC--CCCcEEEEEEcCHHHHHHHHHhcCCcccC---CceEE
Q 020783 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PP--RPPGYAFLEFEDYRDAEDAIRGRDGYNFD---GYRLR 76 (321)
Q Consensus 5 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~---~~--~~kg~aFVeF~~~e~A~~A~~~l~g~~i~---g~~i~ 76 (321)
++++|||+|||+++|+++|+++|++||+|.+|.+.. ++ .++|||||+|.+.++|++|++.|||..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 578999999999999999999999999999999954 22 67899999999999999999999998776 67888
Q ss_pred EEEccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCCC---cEEEEE
Q 020783 77 VELAHGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG---MTGIVD 153 (321)
Q Consensus 77 V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~---g~afV~ 153 (321)
+.++...... .....+|+|+|||..+++++|+++|.+||.|..+.+..+..+ |||||+
T Consensus 82 ~~~~~~~~~~-------------------~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~ 142 (175)
T 3nmr_A 82 MKPADSEKNN-------------------AVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVT 142 (175)
T ss_dssp EEECGGGCCS-------------------CGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEE
T ss_pred Eccccccccc-------------------cCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEE
Confidence 8887654421 124568999999999999999999999999999999988653 699999
Q ss_pred eCCHHHHHHHHHHhCCCcccCccceeEEEEEe
Q 020783 154 YTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 185 (321)
Q Consensus 154 f~~~~~a~~A~~~l~g~~~~g~~~~~~i~v~~ 185 (321)
|.+.++|.+|++.|||..+.+. ..+.|.|..
T Consensus 143 f~~~~~A~~A~~~l~g~~~~~g-~~~~l~V~~ 173 (175)
T 3nmr_A 143 FTTRAMAQTAIKAMHQAQTMEG-CSSPMVVKF 173 (175)
T ss_dssp ESSHHHHHHHHHHHTTSCCCTT-CSSCCEEEE
T ss_pred ECCHHHHHHHHHHhcCCcccCC-CCCCeEEEe
Confidence 9999999999999999877631 014455543
No 11
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.97 E-value=1.7e-29 Score=218.79 Aligned_cols=178 Identities=18% Similarity=0.206 Sum_probs=144.0
Q ss_pred CCCCCeEEEcCCCC-CCCHHHHHHHHhccCCeeEEEEccCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEcc
Q 020783 3 SRSSRTLYVGNLPG-DTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (321)
Q Consensus 3 ~~~~~~l~V~nLp~-~~te~~L~~~F~~~G~I~~v~l~~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a~ 81 (321)
..++++|||+|||+ ++|+++|+++|++||.|..|.+..+. +|||||+|.+.++|++|++.|||..+.|+.|.|.++.
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~--~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~ 108 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK--KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 108 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT--SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCS
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC--CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEec
Confidence 35789999999999 99999999999999999999997654 8999999999999999999999999999999999998
Q ss_pred CCCCCCCCCC-----CCCCCCCCC----------CCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CcEEEEEEEcC
Q 020783 82 GGRRHSSSMD-----RYSSYSSGG----------SRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAG-DVCFSQVFRDR 145 (321)
Q Consensus 82 ~~~~~~~~~~-----~~~~~~~~~----------~~~~~~~~~~~i~V~nl~~~~t~~~l~~~f~~~G-~i~~~~i~~~~ 145 (321)
.......... ....+.... .......+..+|+|+|||..+++++|+++|.+|| .|..+.+...
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~- 187 (229)
T 2adc_A 109 HQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK- 187 (229)
T ss_dssp CCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-
T ss_pred CccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-
Confidence 6532211100 000000000 0011124568999999999999999999999999 9999998653
Q ss_pred CCcEEEEEeCCHHHHHHHHHHhCCCccc-CccceeEEEEEecC
Q 020783 146 GGMTGIVDYTSYDDMKYAIRKLDRSEFR-NAFSRSYVRVREYD 187 (321)
Q Consensus 146 ~~g~afV~f~~~~~a~~A~~~l~g~~~~-g~~~~~~i~v~~~~ 187 (321)
..++|||+|.+.++|.+|++.|||..+. | +.|.+....
T Consensus 188 ~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g----~~l~v~~a~ 226 (229)
T 2adc_A 188 DRKMALIQMGSVEEAVQALIDLHNHDLGEN----HHLRVSFSK 226 (229)
T ss_dssp STTCEEEEESSHHHHHHHHHHHTTCBSSSS----CBCEEEECS
T ss_pred CCcEEEEEECCHHHHHHHHHHHCCCccCCC----CeEEEEEec
Confidence 3569999999999999999999999998 8 667776654
No 12
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.97 E-value=1.6e-29 Score=208.68 Aligned_cols=154 Identities=23% Similarity=0.413 Sum_probs=136.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcc----C-------CeeEEEEccCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCC
Q 020783 4 RSSRTLYVGNLPGDTRMREVEDLFYKY----G-------PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDG 72 (321)
Q Consensus 4 ~~~~~l~V~nLp~~~te~~L~~~F~~~----G-------~I~~v~l~~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g 72 (321)
+++++|||+|||+++|+++|+++|++| | .|.++.+. .++|||||+|.+.++|++|+ .|||..+.|
T Consensus 2 r~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~---~~~g~afV~f~~~~~A~~A~-~~~~~~~~g 77 (172)
T 2g4b_A 2 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN---QDKNFAFLEFRSVDETTQAM-AFDGIIFQG 77 (172)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE---TTTTEEEEEESSHHHHHHHG-GGTTCEETT
T ss_pred CcccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec---CCCCEEEEEeCCHHHHHHHH-HhCCcEecC
Confidence 578999999999999999999999999 6 77777765 45899999999999999999 799999999
Q ss_pred ceEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCC----Cc
Q 020783 73 YRLRVELAHGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GM 148 (321)
Q Consensus 73 ~~i~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~----~g 148 (321)
+.|.|.++..... .....+|+|+|||..+++++|.++|.+||.|..+.+..++. .|
T Consensus 78 ~~i~v~~~~~~~~--------------------~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g 137 (172)
T 2g4b_A 78 QSLKIRRPHDYQP--------------------LPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKG 137 (172)
T ss_dssp EECEEECCSSCCC--------------------CTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEE
T ss_pred ceeeecCCcccCC--------------------CCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcce
Confidence 9999998664331 12356899999999999999999999999999999998853 36
Q ss_pred EEEEEeCCHHHHHHHHHHhCCCcccCccceeEEEEEe
Q 020783 149 TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 185 (321)
Q Consensus 149 ~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~i~v~~ 185 (321)
||||+|.+.++|.+|++.|||..+.| +.|.|..
T Consensus 138 ~afV~f~~~~~A~~A~~~l~g~~~~g----~~l~V~~ 170 (172)
T 2g4b_A 138 YAFCEYVDINVTDQAIAGLNGMQLGD----KKLLVQR 170 (172)
T ss_dssp EEEEEESSTTHHHHHHHHHTTCEETT----EECEEEE
T ss_pred EEEEEeCCHHHHHHHHHHcCCCEECC----eEEEEEe
Confidence 99999999999999999999999999 7777764
No 13
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.97 E-value=1.7e-29 Score=213.66 Aligned_cols=175 Identities=18% Similarity=0.216 Sum_probs=141.7
Q ss_pred CCCeEEEcCCCC-CCCHHHHHHHHhccCCeeEEEEccCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEccCC
Q 020783 5 SSRTLYVGNLPG-DTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (321)
Q Consensus 5 ~~~~l~V~nLp~-~~te~~L~~~F~~~G~I~~v~l~~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a~~~ 83 (321)
++++|||+|||+ ++|+++|+++|++||.|..|.+..+. +|||||+|.+.++|++|+..|||..+.|+.|.|.++...
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~--~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~ 79 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK--KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQ 79 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC--SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC--CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCC
Confidence 468999999999 99999999999999999999997654 899999999999999999999999999999999999865
Q ss_pred CCCCCCCCC-----CCCCCCC----------CCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CcEEEEEEEcCCC
Q 020783 84 RRHSSSMDR-----YSSYSSG----------GSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAG-DVCFSQVFRDRGG 147 (321)
Q Consensus 84 ~~~~~~~~~-----~~~~~~~----------~~~~~~~~~~~~i~V~nl~~~~t~~~l~~~f~~~G-~i~~~~i~~~~~~ 147 (321)
......... ...+... .......++..+|+|+|||..+++++|.++|.+|| .|..+.+..+. .
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~-~ 158 (198)
T 1qm9_A 80 NVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD-R 158 (198)
T ss_dssp SCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTT-S
T ss_pred CcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCC-C
Confidence 322211000 0000000 00111224578999999999999999999999999 99999986643 5
Q ss_pred cEEEEEeCCHHHHHHHHHHhCCCccc-CccceeEEEEEec
Q 020783 148 MTGIVDYTSYDDMKYAIRKLDRSEFR-NAFSRSYVRVREY 186 (321)
Q Consensus 148 g~afV~f~~~~~a~~A~~~l~g~~~~-g~~~~~~i~v~~~ 186 (321)
|+|||+|.+.++|.+|+..|||..+. | ..|.+...
T Consensus 159 g~afV~f~~~~~A~~A~~~l~g~~~~~g----~~l~v~~a 194 (198)
T 1qm9_A 159 KMALIQMGSVEEAVQALIDLHNHDLGEN----HHLRVSFS 194 (198)
T ss_dssp SCEEEECSSHHHHHHHHHHHTSSCCSSC----CSCCEEEE
T ss_pred cEEEEEeCCHHHHHHHHHHhcCCccCCC----CeEEEEee
Confidence 69999999999999999999999998 7 55555544
No 14
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.97 E-value=1.1e-30 Score=216.64 Aligned_cols=162 Identities=16% Similarity=0.241 Sum_probs=139.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEE--ccCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEc
Q 020783 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDL--KIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (321)
Q Consensus 3 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l--~~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a 80 (321)
..++++|||+|||+++|+++|+++|.+||.|..+.+ ..++.++|||||+|.+.++|++|++ |||..+.|+.|.|.++
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~~~ 88 (175)
T 1fje_B 10 STTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 88 (175)
T ss_dssp CSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEECC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEecC
Confidence 467899999999999999999999999997766333 3467889999999999999999996 9999999999999998
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCCCcEEEEEeCCHHHH
Q 020783 81 HGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDM 160 (321)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~afV~f~~~~~a 160 (321)
...... ......+|||+|||..+++++|+++|.+||.|..+ .......|||||+|.+.++|
T Consensus 89 ~~~~~~------------------~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~A 149 (175)
T 1fje_B 89 KGRDSK------------------KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADA 149 (175)
T ss_dssp CCSSCS------------------TTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-CSSSSCCSEEEEECSSHHHH
T ss_pred CCcccc------------------ccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-cCCCCCceEEEEEECCHHHH
Confidence 765421 12356799999999999999999999999999887 22234557999999999999
Q ss_pred HHHHHHhCCCcccCccceeEEEEEecCC
Q 020783 161 KYAIRKLDRSEFRNAFSRSYVRVREYDS 188 (321)
Q Consensus 161 ~~A~~~l~g~~~~g~~~~~~i~v~~~~~ 188 (321)
.+|+..|||..+.| +.|.+.....
T Consensus 150 ~~A~~~l~g~~~~g----~~i~v~~a~~ 173 (175)
T 1fje_B 150 EKNLEEKQGAEIDG----RSVSLYYTGE 173 (175)
T ss_dssp HHHHHHHTEEEETT----EEEEEEECSS
T ss_pred HHHHHHhCCCEECC----eEEEEEecCC
Confidence 99999999999999 7888877654
No 15
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.97 E-value=2.5e-30 Score=212.54 Aligned_cols=158 Identities=19% Similarity=0.374 Sum_probs=138.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcc---CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEc
Q 020783 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (321)
Q Consensus 4 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~---~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a 80 (321)
+++++|||+|||+++|+++|+++|++||.|.+|.++. ++.++|||||+|.+.++|++|+.. +..++|+.|.|.++
T Consensus 1 k~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~ 78 (167)
T 2cjk_A 1 KESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRA 78 (167)
T ss_dssp CGGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEcccccc
Confidence 4689999999999999999999999999999999954 578999999999999999999994 67899999999987
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCC----CcEEEEEeCC
Q 020783 81 HGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTS 156 (321)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~----~g~afV~f~~ 156 (321)
..... .....+|||+|||..+++++|.++|.+||.|..+.+..+.. .|||||+|.+
T Consensus 79 ~~~~~--------------------~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~ 138 (167)
T 2cjk_A 79 IPRDE--------------------QDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDS 138 (167)
T ss_dssp CCHHH--------------------HHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESS
T ss_pred cchhh--------------------ccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECC
Confidence 64321 12345899999999999999999999999999999987743 3699999999
Q ss_pred HHHHHHHHHHhCCCcccCccceeEEEEEecCC
Q 020783 157 YDDMKYAIRKLDRSEFRNAFSRSYVRVREYDS 188 (321)
Q Consensus 157 ~~~a~~A~~~l~g~~~~g~~~~~~i~v~~~~~ 188 (321)
.++|.+|++ +++..+.| +.|.|....+
T Consensus 139 ~~~a~~A~~-~~~~~~~g----~~i~V~~a~p 165 (167)
T 2cjk_A 139 ADAVDRVCQ-NKFIDFKD----RKIEIKRAEP 165 (167)
T ss_dssp HHHHHHHHH-CSEECSSS----SCEEEEECCC
T ss_pred HHHHHHHHh-CCCEEeCC----eEEEEeecCC
Confidence 999999997 89999999 7787776544
No 16
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.96 E-value=3.3e-28 Score=217.24 Aligned_cols=165 Identities=19% Similarity=0.222 Sum_probs=146.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEc---cCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEc
Q 020783 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLK---IPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (321)
Q Consensus 4 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~---~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a 80 (321)
.+.++|||+|||+++|+++|.++|++||.|..+.+. .++.++|||||+|.+.++|.+|+..|||..++|+.|.|.++
T Consensus 93 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a 172 (284)
T 3smz_A 93 PTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWT 172 (284)
T ss_dssp CCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 467899999999999999999999999999999985 36788999999999999999999999999999999999998
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCCcEEEEeCCCCCC-CHHHHHHHHHhcCCcEEEEEEEcCCC---cEEEEEeCC
Q 020783 81 HGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSA-SWQDLKDHMRRAGDVCFSQVFRDRGG---MTGIVDYTS 156 (321)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~nl~~~~-t~~~l~~~f~~~G~i~~~~i~~~~~~---g~afV~f~~ 156 (321)
....... ......+|+|+|||..+ ++++|.++|.+||.|..+.+..+..+ |+|||+|.+
T Consensus 173 ~~~~~~~-----------------~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~ 235 (284)
T 3smz_A 173 DAGQLTP-----------------ALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYET 235 (284)
T ss_dssp CGGGCCT-----------------TTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSS
T ss_pred CCCCCCc-----------------ccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCC
Confidence 7654321 12445789999999995 99999999999999999999987543 699999999
Q ss_pred HHHHHHHHHHhCCCcccCccceeEEEEEecCCC
Q 020783 157 YDDMKYAIRKLDRSEFRNAFSRSYVRVREYDSR 189 (321)
Q Consensus 157 ~~~a~~A~~~l~g~~~~g~~~~~~i~v~~~~~~ 189 (321)
.++|.+|+..|||..+.| +.|.+......
T Consensus 236 ~~~A~~A~~~l~g~~~~g----~~l~v~~a~~~ 264 (284)
T 3smz_A 236 AEMAEEAQQQADGLSLGG----SHLRVSFCAPG 264 (284)
T ss_dssp HHHHHHHHHHHTTCEETT----EECEEEECCSS
T ss_pred HHHHHHHHHHhCCCccCC----eEEEEEEecCC
Confidence 999999999999999999 78888776554
No 17
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.96 E-value=2.2e-28 Score=216.01 Aligned_cols=156 Identities=24% Similarity=0.334 Sum_probs=135.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEccCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEccCC
Q 020783 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (321)
Q Consensus 4 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a~~~ 83 (321)
.+.++|||+|||+++|+++|+++|++||.|..|.+.. ++|||||+|.+.++|.+|+..|||..|.|+.|.|.++...
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~---~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~ 96 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR---DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATHG 96 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET---TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC---CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeecccC
Confidence 4567999999999999999999999999999999963 4899999999999999999999999999999999998642
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCCC---cEEEEEeCCHHHH
Q 020783 84 RRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG---MTGIVDYTSYDDM 160 (321)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~---g~afV~f~~~~~a 160 (321)
.+|||+|||..+++++|.++|.+||.|..+.+..+..+ |||||+|.+.++|
T Consensus 97 --------------------------~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A 150 (261)
T 3sde_A 97 --------------------------AALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPA 150 (261)
T ss_dssp --------------------------SEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHH
T ss_pred --------------------------CcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHH
Confidence 38999999999999999999999999999999988543 6999999999999
Q ss_pred HHHHHHhCCCcccCccceeEEEEEecCC
Q 020783 161 KYAIRKLDRSEFRNAFSRSYVRVREYDS 188 (321)
Q Consensus 161 ~~A~~~l~g~~~~g~~~~~~i~v~~~~~ 188 (321)
..|+..||+..+......+.|.|.....
T Consensus 151 ~~A~~~l~~~~~~~~~~~r~i~v~~~~~ 178 (261)
T 3sde_A 151 RKALERCGDGAFLLTTTPRPVIVEPMEQ 178 (261)
T ss_dssp HHHHHHHHHSCEESSSSCCBCEEEECCC
T ss_pred HHHHHHhcCCeEEecCCCceEEEeeccc
Confidence 9999999655443211226677766543
No 18
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.96 E-value=1.1e-27 Score=213.84 Aligned_cols=151 Identities=24% Similarity=0.280 Sum_probs=137.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEccCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEccCC
Q 020783 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (321)
Q Consensus 4 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a~~~ 83 (321)
.++++|||+|||+++|+++|+++|++|| |..+.+ +.++|||||+|.+.++|.+|+..|||..+.|+.|.|.++..
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~- 94 (284)
T 3smz_A 20 RNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV---DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQPT- 94 (284)
T ss_dssp HCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE---ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE---ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecCC-
Confidence 3679999999999999999999999999 999988 46689999999999999999999999999999999998542
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCC----CcEEEEEeCCHHH
Q 020783 84 RRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDD 159 (321)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~----~g~afV~f~~~~~ 159 (321)
..+|||+|||..+++++|.++|.+||.|..+.+..+.. .|||||+|.+.++
T Consensus 95 -------------------------~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~ 149 (284)
T 3smz_A 95 -------------------------DALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDS 149 (284)
T ss_dssp -------------------------SCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHH
T ss_pred -------------------------CCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHH
Confidence 24899999999999999999999999999999998764 3699999999999
Q ss_pred HHHHHHHhCCCcccCccceeEEEEEecCC
Q 020783 160 MKYAIRKLDRSEFRNAFSRSYVRVREYDS 188 (321)
Q Consensus 160 a~~A~~~l~g~~~~g~~~~~~i~v~~~~~ 188 (321)
|..|+..|+|..+.| ..|.+.....
T Consensus 150 a~~A~~~l~~~~~~g----~~i~v~~a~~ 174 (284)
T 3smz_A 150 AARAKSDLLGKPLGP----RTLYVHWTDA 174 (284)
T ss_dssp HHHHHHHHTTCEETT----EECEEEECCG
T ss_pred HHHHHHHhCCCEeCC----cEEEEEECCC
Confidence 999999999999999 7787776543
No 19
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.96 E-value=5.1e-28 Score=216.87 Aligned_cols=166 Identities=16% Similarity=0.275 Sum_probs=141.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccC-CeeEEEEcc--CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEcc
Q 020783 5 SSRTLYVGNLPGDTRMREVEDLFYKYG-PIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (321)
Q Consensus 5 ~~~~l~V~nLp~~~te~~L~~~F~~~G-~I~~v~l~~--~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a~ 81 (321)
+.++|||+|||+++|+++|.++|++|| .|..|.+.. .+.++|||||+|.+.++|.+|+..|||..+.|+.|.|.++.
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 195 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSN 195 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 578999999999999999999999999 999999954 35789999999999999999999999999999999999988
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCcEEEEeCCCCC-CCHHHHHHHHHhcCCcEEEEEEEcCC-----CcEEEEEeC
Q 020783 82 GGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSS-ASWQDLKDHMRRAGDVCFSQVFRDRG-----GMTGIVDYT 155 (321)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~nl~~~-~t~~~l~~~f~~~G~i~~~~i~~~~~-----~g~afV~f~ 155 (321)
+....... ........+|+|+|||.. +++++|.++|.+||.|..+.+..+.. .|||||+|.
T Consensus 196 ~~~~~~~~-------------~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~ 262 (292)
T 2ghp_A 196 PLEKSKRT-------------DSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFE 262 (292)
T ss_dssp CC----------------------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEES
T ss_pred CCcccccc-------------cccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeC
Confidence 65432211 123345679999999999 99999999999999999999988654 479999999
Q ss_pred CHHHHHHHHHHhCCCcccCccceeEEEEEecCC
Q 020783 156 SYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDS 188 (321)
Q Consensus 156 ~~~~a~~A~~~l~g~~~~g~~~~~~i~v~~~~~ 188 (321)
+.++|..|+ .|||..+.| +.|.|.....
T Consensus 263 ~~~~A~~A~-~l~g~~~~g----~~i~V~~a~~ 290 (292)
T 2ghp_A 263 NKDSAERAL-QMNRSLLGN----REISVSLADK 290 (292)
T ss_dssp SHHHHHHHG-GGTTEEETT----EEEEEEECCC
T ss_pred CHHHHHHHH-HhcCCEECC----cEEEEEEecC
Confidence 999999999 999999999 8888877654
No 20
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.95 E-value=2.5e-27 Score=212.36 Aligned_cols=153 Identities=21% Similarity=0.296 Sum_probs=134.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEccC-CCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEccC
Q 020783 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIP-PRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (321)
Q Consensus 4 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~~-~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a~~ 82 (321)
++.++|||+|||+++|+++|+++|+.||+|..|.|..+ ..++|||||+|.+.++|++|++ |||..+.|+.|.|.++.
T Consensus 39 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~i~v~~~~- 116 (292)
T 2ghp_A 39 RELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAIT-KTHKVVGQNEIIVSHLT- 116 (292)
T ss_dssp ---CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHHT-TTTCEETTEECEEEECC-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHHH-hCCcEeCCcEEEEEECC-
Confidence 56899999999999999999999999999999999653 3358999999999999999996 99999999999999863
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CcEEEEEEEcC---CCcEEEEEeCCHH
Q 020783 83 GRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAG-DVCFSQVFRDR---GGMTGIVDYTSYD 158 (321)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~nl~~~~t~~~l~~~f~~~G-~i~~~~i~~~~---~~g~afV~f~~~~ 158 (321)
..+|||+|||..+++++|.++|.+|| .|..+.+..+. ..|||||+|.+.+
T Consensus 117 --------------------------~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~ 170 (292)
T 2ghp_A 117 --------------------------ECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKE 170 (292)
T ss_dssp --------------------------SCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHH
T ss_pred --------------------------CCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHH
Confidence 24899999999999999999999999 99999998765 4579999999999
Q ss_pred HHHHHHHHhCCCcccCccceeEEEEEecCC
Q 020783 159 DMKYAIRKLDRSEFRNAFSRSYVRVREYDS 188 (321)
Q Consensus 159 ~a~~A~~~l~g~~~~g~~~~~~i~v~~~~~ 188 (321)
+|..|+..|+|..+.| ..|.+.....
T Consensus 171 ~a~~A~~~l~g~~~~g----~~l~v~~a~~ 196 (292)
T 2ghp_A 171 DARYCVEKLNGLKIEG----YTLVTKVSNP 196 (292)
T ss_dssp HHHHHHHHHTTCEETT----EECEEEECCC
T ss_pred HHHHHHHHhCCCEeCC----cEEEEEECCC
Confidence 9999999999999999 7788876653
No 21
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.89 E-value=2.2e-23 Score=160.90 Aligned_cols=108 Identities=19% Similarity=0.318 Sum_probs=73.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcc-CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEccCCC
Q 020783 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI-PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGR 84 (321)
Q Consensus 6 ~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~-~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a~~~~ 84 (321)
+.+|||+|||+++|+++|+++|++||.|.+|+|.. .+.++|||||+|.+.++|++|++.|||..|+|+.|.|.++....
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~~ 84 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 84 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCCC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCcc
Confidence 57899999999999999999999999999999954 34578999999999999999999999999999999999987644
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCcEEEEeCCCCCCCHHH
Q 020783 85 RHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQD 125 (321)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~nl~~~~t~~~ 125 (321)
..... .........+|||+|||+++|++.
T Consensus 85 ~~~~~------------~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 85 EREAE------------LGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp C----------------------------------------
T ss_pred ccccc------------cccccCCCCceEeCCCCCCccccc
Confidence 22110 111223345799999999998763
No 22
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.86 E-value=1.5e-21 Score=146.37 Aligned_cols=78 Identities=26% Similarity=0.448 Sum_probs=73.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEc---cCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEcc
Q 020783 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLK---IPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (321)
Q Consensus 5 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~---~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a~ 81 (321)
..++|||+|||+++|+++|+++|++||+|..|.+. .++.++|||||+|.+.++|++|++.|||..|+|+.|.|.+|+
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 45789999999999999999999999999999995 357889999999999999999999999999999999999987
Q ss_pred C
Q 020783 82 G 82 (321)
Q Consensus 82 ~ 82 (321)
+
T Consensus 98 P 98 (99)
T 4fxv_A 98 P 98 (99)
T ss_dssp B
T ss_pred C
Confidence 4
No 23
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.86 E-value=1.1e-21 Score=151.23 Aligned_cols=106 Identities=29% Similarity=0.434 Sum_probs=95.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEccCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEcc
Q 020783 2 SSRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (321)
Q Consensus 2 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a~ 81 (321)
...++++|||+|||+++|+++|+++|++||.|..|.+..++.++|||||+|.+.++|.+|+..|||..++|+.|.|.++.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 83 (115)
T 3lqv_A 4 PPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYN 83 (115)
T ss_dssp CTTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEec
Confidence 45678999999999999999999999999999999998888889999999999999999999999999999999999988
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCC
Q 020783 82 GGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGD 135 (321)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~nl~~~~t~~~l~~~f~~~G~ 135 (321)
..... .+++...++++|+++|.+||-
T Consensus 84 ~~~~~----------------------------~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 84 ANRAF----------------------------QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp HHHHT----------------------------TTSCHHHHHHHHHHHHHHHCC
T ss_pred CChhh----------------------------hhhhHhHhHHHHHHHHHHhCC
Confidence 65421 346667789999999999985
No 24
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.84 E-value=6.1e-20 Score=172.65 Aligned_cols=82 Identities=34% Similarity=0.583 Sum_probs=76.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcc---CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEc
Q 020783 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (321)
Q Consensus 4 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~---~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a 80 (321)
.+.++|||+|||++||+++|.++|++||.|..|.|+. ++.++|||||+|.+.++|++||..|||..|.|+.|.|.++
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 4568999999999999999999999999999999953 6788999999999999999999999999999999999999
Q ss_pred cCCCC
Q 020783 81 HGGRR 85 (321)
Q Consensus 81 ~~~~~ 85 (321)
.....
T Consensus 180 ~~~~~ 184 (437)
T 3pgw_S 180 RGRTV 184 (437)
T ss_pred CCCCC
Confidence 87554
No 25
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.83 E-value=1.9e-20 Score=143.05 Aligned_cols=81 Identities=17% Similarity=0.303 Sum_probs=75.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcc---CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEE
Q 020783 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (321)
Q Consensus 3 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~---~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~ 79 (321)
..+.++|||+|||+++|+++|+++|++||.|.+|.|+. +++++|||||+|.+.++|++|++.|||..|+|+.|.|.+
T Consensus 3 ~~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 3 QIPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQL 82 (110)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 46889999999999999999999999999999999953 578899999999999999999999999999999999999
Q ss_pred ccCC
Q 020783 80 AHGG 83 (321)
Q Consensus 80 a~~~ 83 (321)
+...
T Consensus 83 a~~~ 86 (110)
T 3s8s_A 83 DIKG 86 (110)
T ss_dssp CSTT
T ss_pred CCCC
Confidence 8754
No 26
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.83 E-value=8.7e-21 Score=139.92 Aligned_cols=80 Identities=18% Similarity=0.328 Sum_probs=72.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccC-CeeEEEEcc---CCCCCcEEEEEEcCHHHHHHHHHhc-CCcccCCceEEEEEc
Q 020783 6 SRTLYVGNLPGDTRMREVEDLFYKYG-PIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGR-DGYNFDGYRLRVELA 80 (321)
Q Consensus 6 ~~~l~V~nLp~~~te~~L~~~F~~~G-~I~~v~l~~---~~~~kg~aFVeF~~~e~A~~A~~~l-~g~~i~g~~i~V~~a 80 (321)
+++|||+|||+++|+++|+++|++|| .|.+|.|+. ++.++|||||+|.+.++|++|++.| ++..++|+.|.|.++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 57999999999999999999999999 899999953 5789999999999999999999977 456799999999999
Q ss_pred cCCCC
Q 020783 81 HGGRR 85 (321)
Q Consensus 81 ~~~~~ 85 (321)
.+...
T Consensus 81 ~~~~~ 85 (91)
T 2lxi_A 81 DPKPK 85 (91)
T ss_dssp CSCCC
T ss_pred CCCCC
Confidence 86553
No 27
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=3.4e-20 Score=141.42 Aligned_cols=83 Identities=59% Similarity=1.050 Sum_probs=78.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEccCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEccC
Q 020783 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (321)
Q Consensus 3 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a~~ 82 (321)
..+.++|||+|||+++|+++|+++|++||.|..|.|+.++.+++||||+|.+.++|++|++.||+..|.|+.|.|.+++.
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 98 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRS 98 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEccc
Confidence 46789999999999999999999999999999999988888899999999999999999999999999999999999987
Q ss_pred CCC
Q 020783 83 GRR 85 (321)
Q Consensus 83 ~~~ 85 (321)
...
T Consensus 99 ~~~ 101 (109)
T 1x4a_A 99 GRG 101 (109)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
No 28
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.82 E-value=2e-20 Score=140.73 Aligned_cols=100 Identities=41% Similarity=0.583 Sum_probs=83.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEccCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEccCCCCC
Q 020783 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRH 86 (321)
Q Consensus 7 ~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a~~~~~~ 86 (321)
++|||+|||+++|+++|+++|++||+|..|.+..+ ++|||||+|.+.++|++|+..|||..+.|+.|.|.++......
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 78 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN--PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPRR 78 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS--SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCCS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC--CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCCc
Confidence 58999999999999999999999999999999765 7999999999999999999999999999999999999876532
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCcEEEEeCCC
Q 020783 87 SSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLP 118 (321)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~i~V~nl~ 118 (321)
... +..........+|||+||+
T Consensus 79 ~~~----------~~~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 79 SRF----------DRPPARRKLLEVLFNGPLE 100 (101)
T ss_dssp SCC----------CSCCCSCCCCSCCCSCCCC
T ss_pred ccC----------CCCCccccCCCceecCCCC
Confidence 211 1111122345678999886
No 29
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.82 E-value=1.1e-19 Score=140.31 Aligned_cols=85 Identities=27% Similarity=0.492 Sum_probs=78.7
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcc--CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEE
Q 020783 1 MSSRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVE 78 (321)
Q Consensus 1 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~--~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~ 78 (321)
|+..+.++|||+|||+++|+++|+++|++||.|..|.+.. ++.++|||||+|.+.++|++|++.|||..|.|+.|.|.
T Consensus 2 ~e~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~ 81 (116)
T 2fy1_A 2 VEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVE 81 (116)
T ss_dssp CTTCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 4567889999999999999999999999999999999955 67889999999999999999999999999999999999
Q ss_pred EccCCCC
Q 020783 79 LAHGGRR 85 (321)
Q Consensus 79 ~a~~~~~ 85 (321)
++.....
T Consensus 82 ~a~~~~~ 88 (116)
T 2fy1_A 82 QAKKPSF 88 (116)
T ss_dssp ECCCSSC
T ss_pred ECCCCCC
Confidence 9986653
No 30
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=1.4e-19 Score=135.53 Aligned_cols=83 Identities=31% Similarity=0.476 Sum_probs=77.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcc---CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEE
Q 020783 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (321)
Q Consensus 3 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~---~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~ 79 (321)
..++++|||+|||+++|+++|+++|++||+|..|.|+. ++.++|||||+|.+.++|++|+..|||..|.|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 56889999999999999999999999999999999954 578899999999999999999999999999999999999
Q ss_pred ccCCCC
Q 020783 80 AHGGRR 85 (321)
Q Consensus 80 a~~~~~ 85 (321)
+.....
T Consensus 85 a~~~~~ 90 (99)
T 1whw_A 85 STIKKE 90 (99)
T ss_dssp CCCCST
T ss_pred cCCCcc
Confidence 987664
No 31
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.82 E-value=2.2e-20 Score=138.61 Aligned_cols=80 Identities=19% Similarity=0.332 Sum_probs=72.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCC--eeEEEEcc---CCCCCcEEEEEEcCHHHHHHHHHhcCCc----ccCCc
Q 020783 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGP--IVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGY----NFDGY 73 (321)
Q Consensus 3 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~--I~~v~l~~---~~~~kg~aFVeF~~~e~A~~A~~~l~g~----~i~g~ 73 (321)
...-+||||+|||+++|+++|+++|++||. |.+|.+.. ++.++|||||+|.+.++|++|++.|||. .|+|+
T Consensus 6 ~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr 85 (95)
T 2lkz_A 6 HHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGK 85 (95)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTE
T ss_pred CCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCE
Confidence 456689999999999999999999999995 67888843 5889999999999999999999999997 48999
Q ss_pred eEEEEEccC
Q 020783 74 RLRVELAHG 82 (321)
Q Consensus 74 ~i~V~~a~~ 82 (321)
.|.|+||+.
T Consensus 86 ~i~V~~Aks 94 (95)
T 2lkz_A 86 TIGVDFAKS 94 (95)
T ss_dssp EEEEEECCC
T ss_pred EEEEEEccC
Confidence 999999875
No 32
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=6.2e-20 Score=137.17 Aligned_cols=84 Identities=24% Similarity=0.405 Sum_probs=77.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcc------CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceE
Q 020783 2 SSRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI------PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRL 75 (321)
Q Consensus 2 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~------~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i 75 (321)
++.+.++|||+|||+++|+++|+++|++||.|..|.+.. ++.++|||||+|.+.++|++|+..|||..|.|+.|
T Consensus 1 Gs~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 80 (98)
T 2cpf_A 1 GSSGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKL 80 (98)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEE
Confidence 357889999999999999999999999999999999954 33778999999999999999999999999999999
Q ss_pred EEEEccCCCC
Q 020783 76 RVELAHGGRR 85 (321)
Q Consensus 76 ~V~~a~~~~~ 85 (321)
.|.++.....
T Consensus 81 ~V~~a~~~~~ 90 (98)
T 2cpf_A 81 EVRISERATK 90 (98)
T ss_dssp EEECSSCSSC
T ss_pred EEEEccCCCC
Confidence 9999987654
No 33
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=2e-19 Score=133.60 Aligned_cols=83 Identities=29% Similarity=0.440 Sum_probs=77.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcc---CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEE
Q 020783 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (321)
Q Consensus 3 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~---~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~ 79 (321)
..++++|||+|||+++|+++|+++|++||.|..|.+.. ++.++|||||+|.+.++|++|+..|||..|.|+.|.|.+
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 81 (95)
T 2dnz_A 2 SSGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGH 81 (95)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 45789999999999999999999999999999999954 478899999999999999999999999999999999999
Q ss_pred ccCCCC
Q 020783 80 AHGGRR 85 (321)
Q Consensus 80 a~~~~~ 85 (321)
+.....
T Consensus 82 a~~~~~ 87 (95)
T 2dnz_A 82 VTERLD 87 (95)
T ss_dssp SSCCCC
T ss_pred cccccC
Confidence 986653
No 34
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=5.2e-20 Score=138.27 Aligned_cols=81 Identities=17% Similarity=0.219 Sum_probs=73.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEccCCCCCcEEEEEEcCHHHHHHHHHhcC--CcccCCceEEEEEc
Q 020783 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRD--GYNFDGYRLRVELA 80 (321)
Q Consensus 3 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~~~~~kg~aFVeF~~~e~A~~A~~~l~--g~~i~g~~i~V~~a 80 (321)
-.+.++|||+|||+++|+++|+++|++||+|.+|.|+.+ +|||||+|.+.++|++|+..|+ +..|.|+.|.|.++
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~---kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A 89 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG---KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFS 89 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC---CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEc
Confidence 467899999999999999999999999999999999753 8999999999999999999876 47899999999999
Q ss_pred cCCCCC
Q 020783 81 HGGRRH 86 (321)
Q Consensus 81 ~~~~~~ 86 (321)
+.....
T Consensus 90 ~~~~~~ 95 (105)
T 1sjq_A 90 NHKELK 95 (105)
T ss_dssp SSSSCC
T ss_pred CCCCCC
Confidence 876543
No 35
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.1e-19 Score=135.24 Aligned_cols=83 Identities=23% Similarity=0.419 Sum_probs=76.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEE-EEcc---CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEE
Q 020783 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDI-DLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVE 78 (321)
Q Consensus 3 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v-~l~~---~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~ 78 (321)
+.++++|||+|||+++|+++|+++|++||.|..+ .|+. ++.++|||||+|.+.++|++|+..|||..|.|+.|.|.
T Consensus 2 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 81 (96)
T 1x5t_A 2 SSGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVS 81 (96)
T ss_dssp CSCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 4678999999999999999999999999999999 8854 57889999999999999999999999999999999999
Q ss_pred EccCCCC
Q 020783 79 LAHGGRR 85 (321)
Q Consensus 79 ~a~~~~~ 85 (321)
++.....
T Consensus 82 ~a~~~~~ 88 (96)
T 1x5t_A 82 YAFKKDS 88 (96)
T ss_dssp ESCCCCC
T ss_pred EecccCC
Confidence 9987653
No 36
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.81 E-value=9.2e-20 Score=142.51 Aligned_cols=82 Identities=20% Similarity=0.384 Sum_probs=76.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHH----HHHhccCCeeEEEEccCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEE
Q 020783 3 SRSSRTLYVGNLPGDTRMREVE----DLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVE 78 (321)
Q Consensus 3 ~~~~~~l~V~nLp~~~te~~L~----~~F~~~G~I~~v~l~~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~ 78 (321)
..++++|||+|||+.+++++|+ ++|++||.|.+|.+..++.++|||||+|.+.++|++|+..|||..|.|+.|.|.
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~ 105 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVIT 105 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEE
Confidence 4578999999999999999876 799999999999998888999999999999999999999999999999999999
Q ss_pred EccCCC
Q 020783 79 LAHGGR 84 (321)
Q Consensus 79 ~a~~~~ 84 (321)
++....
T Consensus 106 ~a~~~~ 111 (127)
T 2a3j_A 106 FSETPQ 111 (127)
T ss_dssp ECCCCC
T ss_pred EccCcc
Confidence 998654
No 37
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.81 E-value=9.6e-20 Score=135.64 Aligned_cols=80 Identities=29% Similarity=0.625 Sum_probs=75.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcc---CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEcc
Q 020783 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (321)
Q Consensus 5 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~---~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a~ 81 (321)
|+++|||+|||+++|+++|+++|++||.|..|.+.. ++.++|||||+|.+.++|++|++.|||..++|+.|.|.++.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 679999999999999999999999999999999954 47889999999999999999999999999999999999998
Q ss_pred CCC
Q 020783 82 GGR 84 (321)
Q Consensus 82 ~~~ 84 (321)
...
T Consensus 81 ~~~ 83 (96)
T 2x1f_A 81 NSD 83 (96)
T ss_dssp CSS
T ss_pred CCC
Confidence 765
No 38
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.81 E-value=1e-19 Score=135.37 Aligned_cols=79 Identities=18% Similarity=0.222 Sum_probs=72.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEccCCCCCcEEEEEEcCHHHHHHHHHhcCCcc--cCCceEEEEEc
Q 020783 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYN--FDGYRLRVELA 80 (321)
Q Consensus 3 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~--i~g~~i~V~~a 80 (321)
..|+++|||+|||+++|+++|+++|++||.|.+|.+.. .+|||||+|++.++|.+|+..|||.. +.|++|.|+++
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~---~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S 94 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP---KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYS 94 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET---TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc---CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEec
Confidence 46899999999999999999999999999999999973 48999999999999999999999875 78999999999
Q ss_pred cCCC
Q 020783 81 HGGR 84 (321)
Q Consensus 81 ~~~~ 84 (321)
+.+.
T Consensus 95 ~~k~ 98 (100)
T 3r27_A 95 TSQK 98 (100)
T ss_dssp SCSC
T ss_pred cccc
Confidence 8653
No 39
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.81 E-value=9e-20 Score=132.52 Aligned_cols=79 Identities=33% Similarity=0.541 Sum_probs=74.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEc---cCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEE
Q 020783 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLK---IPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (321)
Q Consensus 3 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~---~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~ 79 (321)
..+.++|||+|||+++|+++|+++|++||.|..|.++ .++.++|||||+|.+.++|++|++.|||..++|+.|.|.+
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 4688999999999999999999999999999999994 4577899999999999999999999999999999999999
Q ss_pred cc
Q 020783 80 AH 81 (321)
Q Consensus 80 a~ 81 (321)
++
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 40
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.81 E-value=3e-19 Score=137.51 Aligned_cols=85 Identities=24% Similarity=0.421 Sum_probs=77.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcc---CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEE
Q 020783 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (321)
Q Consensus 3 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~---~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~ 79 (321)
..+.++|||+|||+++|+++|+++|++||.|..|.|.. ++.++|||||+|.+.++|++|++.|||..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 91 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 35779999999999999999999999999999999953 678899999999999999999999999999999999999
Q ss_pred ccCCCCCC
Q 020783 80 AHGGRRHS 87 (321)
Q Consensus 80 a~~~~~~~ 87 (321)
+.......
T Consensus 92 a~~~~~~~ 99 (115)
T 2dgo_A 92 ATRKPPAP 99 (115)
T ss_dssp SSCCCCCS
T ss_pred ccCCCCCC
Confidence 98766443
No 41
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.81 E-value=6.5e-20 Score=131.74 Aligned_cols=75 Identities=17% Similarity=0.217 Sum_probs=70.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEccCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEcc
Q 020783 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (321)
Q Consensus 4 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a~ 81 (321)
-.+.-|||+||++.+|+++|+++|.+||+|.++.+.. ++|||||+|.++++|++|++.|||..+.|+.|.|++|.
T Consensus 5 ~~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~---~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 5 WGSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL---NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET---TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred CccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC---CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 4567899999999999999999999999999999964 69999999999999999999999999999999999984
No 42
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.81 E-value=2.8e-19 Score=145.48 Aligned_cols=144 Identities=17% Similarity=0.068 Sum_probs=104.3
Q ss_pred EEEccC-CCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcEEEE
Q 020783 36 IDLKIP-PRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLV 114 (321)
Q Consensus 36 v~l~~~-~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V 114 (321)
++|..+ ..++|||||+|.+.++|++|+..+++....+..+.+........... ...............+|||
T Consensus 3 ~kl~ln~~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~l~v 75 (158)
T 2kn4_A 3 YKLILNGKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTE-------GSHHHHHHMDVEGMTSLKV 75 (158)
T ss_dssp EEEEEECSSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEEC-------CCCCSSCCCCCCBCCEEEE
T ss_pred EEEEecCccccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccc-------cccccccccCCCCCCEEEE
Confidence 444333 36799999999999999999988876433333333322111100000 0000111222345679999
Q ss_pred eCCCCCCCHHHHHHHHHhcCCcEEEEEEEcC----CCcEEEEEeCCHHHHHHHHHHhCCCcccCccceeEEEEEecCCCC
Q 020783 115 TGLPSSASWQDLKDHMRRAGDVCFSQVFRDR----GGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDSRR 190 (321)
Q Consensus 115 ~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~i~v~~~~~~r 190 (321)
+|||..+++++|+++|.+||.|..+.+..+. ..|||||+|.+.++|+.|++.|||..+.| +.|.|......+
T Consensus 76 ~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~v~~a~~~~ 151 (158)
T 2kn4_A 76 DNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDG----RELRVQMARYGR 151 (158)
T ss_dssp ESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSS----SEEEEEEECCSS
T ss_pred eCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECC----eEEEEEECCCCC
Confidence 9999999999999999999999999998874 34699999999999999999999999999 788888876553
No 43
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=2.8e-19 Score=133.85 Aligned_cols=82 Identities=23% Similarity=0.492 Sum_probs=76.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcc---CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEE
Q 020783 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (321)
Q Consensus 3 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~---~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~ 79 (321)
..+.++|||+|||+++|+++|+++|++||.|..|.|+. ++.++|||||+|.+.++|++|++ |||..|.|+.|.|.+
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~ 85 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKR 85 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEE
Confidence 46789999999999999999999999999999999964 57789999999999999999999 999999999999999
Q ss_pred ccCCCC
Q 020783 80 AHGGRR 85 (321)
Q Consensus 80 a~~~~~ 85 (321)
+.....
T Consensus 86 a~~~~~ 91 (99)
T 2dgs_A 86 AEPRDS 91 (99)
T ss_dssp CCCCCC
T ss_pred CCCCcc
Confidence 987654
No 44
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.81 E-value=8.1e-20 Score=133.36 Aligned_cols=81 Identities=26% Similarity=0.418 Sum_probs=72.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcc---CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEE
Q 020783 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (321)
Q Consensus 3 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~---~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~ 79 (321)
..+.++|||+|||+++|+++|+++|++||.|..|.+.. ++.++|||||+|.+.++|++|++.|||..++|+.|.|.+
T Consensus 3 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (87)
T 3bs9_A 3 LGSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 82 (87)
T ss_dssp ---CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEe
Confidence 45788999999999999999999999999999999953 677899999999999999999999999999999999999
Q ss_pred ccCC
Q 020783 80 AHGG 83 (321)
Q Consensus 80 a~~~ 83 (321)
+...
T Consensus 83 a~~k 86 (87)
T 3bs9_A 83 ATRK 86 (87)
T ss_dssp EC--
T ss_pred cCCC
Confidence 8753
No 45
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=2.4e-19 Score=135.71 Aligned_cols=83 Identities=29% Similarity=0.441 Sum_probs=77.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcc---CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEE
Q 020783 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (321)
Q Consensus 3 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~---~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~ 79 (321)
..+.++|||+|||+++|+++|+++|++||.|..|.+.. ++.++|||||+|.+.++|++|+..|||..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 91 (105)
T 1x5u_A 12 RNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNK 91 (105)
T ss_dssp CCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 45789999999999999999999999999999999954 678899999999999999999999999999999999999
Q ss_pred ccCCCC
Q 020783 80 AHGGRR 85 (321)
Q Consensus 80 a~~~~~ 85 (321)
+.....
T Consensus 92 a~~~~~ 97 (105)
T 1x5u_A 92 ASAHNK 97 (105)
T ss_dssp TTTTSC
T ss_pred CCCCCc
Confidence 987654
No 46
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=3.2e-19 Score=134.53 Aligned_cols=83 Identities=30% Similarity=0.442 Sum_probs=76.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEccC-CCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEcc
Q 020783 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIP-PRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (321)
Q Consensus 3 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~~-~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a~ 81 (321)
..+.++|||+|||+++|+++|+++|++||.|..|.|..+ +.++|||||+|.+.++|++|+..|||..|.|+.|.|.++.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWAT 91 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECC
Confidence 467899999999999999999999999999999999653 4468999999999999999999999999999999999998
Q ss_pred CCCC
Q 020783 82 GGRR 85 (321)
Q Consensus 82 ~~~~ 85 (321)
....
T Consensus 92 ~~~~ 95 (103)
T 2cqi_A 92 TPSS 95 (103)
T ss_dssp CTTC
T ss_pred CCcc
Confidence 7653
No 47
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.81 E-value=4.2e-20 Score=137.78 Aligned_cols=84 Identities=26% Similarity=0.513 Sum_probs=77.0
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHH----HHHhccCCeeEEEEccCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEE
Q 020783 1 MSSRSSRTLYVGNLPGDTRMREVE----DLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLR 76 (321)
Q Consensus 1 ~~~~~~~~l~V~nLp~~~te~~L~----~~F~~~G~I~~v~l~~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~ 76 (321)
|+..++++|||+|||+++|+++|+ ++|++||.|..|.+..++.++|||||+|.+.++|++|+..|||..+.|+.|.
T Consensus 3 ~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (97)
T 1nu4_A 3 PETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 82 (97)
T ss_dssp ---CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEE
Confidence 457889999999999999999999 9999999999999987777899999999999999999999999999999999
Q ss_pred EEEccCCC
Q 020783 77 VELAHGGR 84 (321)
Q Consensus 77 V~~a~~~~ 84 (321)
|.++....
T Consensus 83 v~~a~~~~ 90 (97)
T 1nu4_A 83 IQYAKTDS 90 (97)
T ss_dssp EEECSSCC
T ss_pred EEEccCCC
Confidence 99998654
No 48
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.81 E-value=1.3e-19 Score=133.77 Aligned_cols=84 Identities=25% Similarity=0.414 Sum_probs=77.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcc-CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEc
Q 020783 2 SSRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI-PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (321)
Q Consensus 2 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~-~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a 80 (321)
...+.++|||+|||+++|+++|+++|++||.|..|.+.. ++.++|||||+|.+.++|++|+..|||..++|+.|.|.++
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 83 (92)
T 2dgv_A 4 GSSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRID 83 (92)
T ss_dssp SSSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEEC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 356889999999999999999999999999999999964 6778999999999999999999999999999999999999
Q ss_pred cCCCC
Q 020783 81 HGGRR 85 (321)
Q Consensus 81 ~~~~~ 85 (321)
.....
T Consensus 84 ~~~~~ 88 (92)
T 2dgv_A 84 RNASG 88 (92)
T ss_dssp SCCSS
T ss_pred CCCCC
Confidence 87653
No 49
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=1.4e-19 Score=136.49 Aligned_cols=83 Identities=40% Similarity=0.578 Sum_probs=76.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcc---CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEE
Q 020783 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (321)
Q Consensus 3 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~---~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~ 79 (321)
..+.++|||+|||+++|+++|+++|++||.|..|.|.. ++.++|||||+|.+.++|++|+..|||..|.|+.|.|.+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQV 89 (103)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 35679999999999999999999999999999999964 477899999999999999999999999999999999999
Q ss_pred ccCCCC
Q 020783 80 AHGGRR 85 (321)
Q Consensus 80 a~~~~~ 85 (321)
+.....
T Consensus 90 a~~~~~ 95 (103)
T 2dnm_A 90 ARYGRR 95 (103)
T ss_dssp CSSCCS
T ss_pred CCcCCC
Confidence 987654
No 50
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.81 E-value=2.3e-19 Score=144.76 Aligned_cols=138 Identities=19% Similarity=0.129 Sum_probs=110.8
Q ss_pred CCCCcEEEEEEcCHHHHHHHHHhc-CCcccCCceEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcEEEEeCCCCC
Q 020783 42 PRPPGYAFLEFEDYRDAEDAIRGR-DGYNFDGYRLRVELAHGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSS 120 (321)
Q Consensus 42 ~~~kg~aFVeF~~~e~A~~A~~~l-~g~~i~g~~i~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~nl~~~ 120 (321)
...+|+++|+|.+.++|++|++.| ||..++| .|.+.++.......... ................+|||+|||..
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~V~nl~~~ 84 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGS----HHHHHHMHRDSCPLDCKVYVGNLGNN 84 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSS----SSCCCCSCSSSSTTSCEEEEESCCSC
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCcccccccc----ccccccccccCCCCCCEEEEeCCCCC
Confidence 356899999999999999999999 9999999 99999876532111100 00011112233456789999999999
Q ss_pred CCHHHHHHHHHhcCCcEEEEEEEcCCCcEEEEEeCCHHHHHHHHHHhCCCcccCccceeEEEEEecCCC
Q 020783 121 ASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDSR 189 (321)
Q Consensus 121 ~t~~~l~~~f~~~G~i~~~~i~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~i~v~~~~~~ 189 (321)
+++++|+++|.+||.|..+.+..+ ..|||||+|.+.++|..|+..|||..+.| ..|.|......
T Consensus 85 ~t~~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~v~~a~~~ 148 (150)
T 2i2y_A 85 GNKTELERAFGYYGPLRSVWVARN-PPGFAFVEFEDPRDAADAVRELDGRTLCG----CRVRVELSNGE 148 (150)
T ss_dssp CSCHHHHHHHHHHSCEEEEEECSS-SCSEEEEEESSHHHHHHHHHHHSSSCSSS----SCCEEEECCCC
T ss_pred CCHHHHHHHHHhhCCEEEEEEeeC-CCcEEEEEECCHHHHHHHHHHcCCCEECC----eEEEEEEcCCC
Confidence 999999999999999999999887 46799999999999999999999999999 77777776544
No 51
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.81 E-value=1.5e-19 Score=130.78 Aligned_cols=78 Identities=22% Similarity=0.399 Sum_probs=73.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEc---cCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEccC
Q 020783 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLK---IPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (321)
Q Consensus 6 ~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~---~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a~~ 82 (321)
+.+|||+|||+++|+++|+++|++||.|..+.+. .++.++|||||+|.+.++|++|+..|||..++|+.|.|.++..
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 4689999999999999999999999999999995 3578899999999999999999999999999999999999886
Q ss_pred C
Q 020783 83 G 83 (321)
Q Consensus 83 ~ 83 (321)
.
T Consensus 81 ~ 81 (83)
T 3md1_A 81 L 81 (83)
T ss_dssp C
T ss_pred C
Confidence 4
No 52
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.5e-19 Score=136.06 Aligned_cols=84 Identities=32% Similarity=0.522 Sum_probs=77.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcc---CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEE
Q 020783 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (321)
Q Consensus 3 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~---~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~ 79 (321)
..+.++|||+|||+++|+++|+++|++||.|..|.|.. ++.++|||||+|.+.++|++|++.|||..|.|+.|.|.+
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 35789999999999999999999999999999999954 478899999999999999999999999999999999999
Q ss_pred ccCCCCC
Q 020783 80 AHGGRRH 86 (321)
Q Consensus 80 a~~~~~~ 86 (321)
+......
T Consensus 89 a~~~~~~ 95 (102)
T 2cqb_A 89 AKPMRIK 95 (102)
T ss_dssp CCCCCCC
T ss_pred CCCCCCC
Confidence 9876543
No 53
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2e-19 Score=133.96 Aligned_cols=81 Identities=20% Similarity=0.304 Sum_probs=74.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHH----HHHhccCCeeEEEEccCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEE
Q 020783 4 RSSRTLYVGNLPGDTRMREVE----DLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (321)
Q Consensus 4 ~~~~~l~V~nLp~~~te~~L~----~~F~~~G~I~~v~l~~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~ 79 (321)
.+.++|||+|||+++|+++|+ ++|++||.|..|.|+.+...+|||||+|.+.++|++|++.|||..++|+.|.|.+
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~ 86 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSL 86 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 467899999999999999999 9999999999999976544499999999999999999999999999999999999
Q ss_pred ccCCC
Q 020783 80 AHGGR 84 (321)
Q Consensus 80 a~~~~ 84 (321)
+.+..
T Consensus 87 a~~~~ 91 (96)
T 2dgx_A 87 ATGAS 91 (96)
T ss_dssp CCCSS
T ss_pred cCCCC
Confidence 97654
No 54
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=1.4e-19 Score=135.48 Aligned_cols=83 Identities=24% Similarity=0.396 Sum_probs=76.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhccCCee-EEEEcc---CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCce---
Q 020783 2 SSRSSRTLYVGNLPGDTRMREVEDLFYKYGPIV-DIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYR--- 74 (321)
Q Consensus 2 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~-~v~l~~---~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~--- 74 (321)
+..++++|||+|||+++|+++|+++|++||.|. .|.+.. ++.++|||||+|.+.++|++|++.|||..+.|+.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~ 84 (99)
T 2div_A 5 SSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAK 84 (99)
T ss_dssp CCSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCE
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcce
Confidence 457889999999999999999999999999999 999953 5788999999999999999999999999999999
Q ss_pred -EEEEEccCCC
Q 020783 75 -LRVELAHGGR 84 (321)
Q Consensus 75 -i~V~~a~~~~ 84 (321)
|.|.++....
T Consensus 85 ~l~v~~a~~~~ 95 (99)
T 2div_A 85 RFKLNYATYSG 95 (99)
T ss_dssp ECCEEETTCCS
T ss_pred eEEEeecCCCC
Confidence 9999988654
No 55
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.9e-19 Score=138.53 Aligned_cols=82 Identities=17% Similarity=0.228 Sum_probs=74.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEccCCCCCcEEEEEEcCHHHHHHHHHhcCC--cccCCceEEEEEc
Q 020783 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDG--YNFDGYRLRVELA 80 (321)
Q Consensus 3 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~~~~~kg~aFVeF~~~e~A~~A~~~l~g--~~i~g~~i~V~~a 80 (321)
..++++|||+|||+++|+++|+++|++||.|.+|.|+.+ +|||||+|++.++|++|++.|++ ..|.|+.|.|.++
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~---kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a 104 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG---KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFS 104 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG---GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC---CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEc
Confidence 467899999999999999999999999999999999753 89999999999999999998874 6899999999999
Q ss_pred cCCCCCC
Q 020783 81 HGGRRHS 87 (321)
Q Consensus 81 ~~~~~~~ 87 (321)
.......
T Consensus 105 ~~k~~~~ 111 (119)
T 2ad9_A 105 NHKELKT 111 (119)
T ss_dssp SSSSCCC
T ss_pred cCCCCCc
Confidence 8766443
No 56
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=2.5e-19 Score=132.71 Aligned_cols=78 Identities=27% Similarity=0.442 Sum_probs=73.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcc---CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEc
Q 020783 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (321)
Q Consensus 4 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~---~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a 80 (321)
.+.++|||+|||+++|+++|+++|++||+|..|.+.. ++.++|||||+|.+.++|++|++.|||..|.|+.|.|.+|
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 93 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIA 93 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEec
Confidence 5678999999999999999999999999999999965 4778999999999999999999999999999999999997
Q ss_pred c
Q 020783 81 H 81 (321)
Q Consensus 81 ~ 81 (321)
+
T Consensus 94 k 94 (94)
T 2e5h_A 94 I 94 (94)
T ss_dssp C
T ss_pred C
Confidence 5
No 57
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2e-19 Score=135.42 Aligned_cols=83 Identities=33% Similarity=0.577 Sum_probs=76.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcc---CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEE
Q 020783 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (321)
Q Consensus 3 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~---~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~ 79 (321)
..+.++|||+|||+++|+++|+++|++||.|..|.|.. ++.++|||||+|.+.++|++|++.|||..|.|+.|.|.+
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 88 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 88 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 35789999999999999999999999999999999965 567899999999999999999999999999999999999
Q ss_pred ccCCCC
Q 020783 80 AHGGRR 85 (321)
Q Consensus 80 a~~~~~ 85 (321)
+.....
T Consensus 89 a~~~~~ 94 (102)
T 1x5s_A 89 AGKSSD 94 (102)
T ss_dssp EECCCC
T ss_pred CCCCCC
Confidence 987653
No 58
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.5e-19 Score=136.32 Aligned_cols=83 Identities=34% Similarity=0.552 Sum_probs=76.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcc---CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEE
Q 020783 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (321)
Q Consensus 3 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~---~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~ 79 (321)
..+.++|||+|||+++|+++|+++|++||+|..|.|+. ++.++|||||+|.+.++|++|+..|||..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEW 91 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 35689999999999999999999999999999999953 578899999999999999999999999999999999999
Q ss_pred ccCCCC
Q 020783 80 AHGGRR 85 (321)
Q Consensus 80 a~~~~~ 85 (321)
+.....
T Consensus 92 a~~~~~ 97 (103)
T 2cq0_A 92 AKPSTN 97 (103)
T ss_dssp SSCCCC
T ss_pred CCCCCC
Confidence 987653
No 59
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=2.4e-19 Score=135.25 Aligned_cols=83 Identities=23% Similarity=0.336 Sum_probs=77.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcc-CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEcc
Q 020783 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI-PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (321)
Q Consensus 3 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~-~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a~ 81 (321)
..+.++|||+|||+++|+++|+++|++||.|..|.|.. ++.++|||||+|.+.++|++|+..|||..|.|+.|.|.++.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 91 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEec
Confidence 45789999999999999999999999999999999954 56789999999999999999999999999999999999998
Q ss_pred CCCC
Q 020783 82 GGRR 85 (321)
Q Consensus 82 ~~~~ 85 (321)
....
T Consensus 92 ~~~~ 95 (103)
T 2d9p_A 92 RKEE 95 (103)
T ss_dssp SCCC
T ss_pred cccc
Confidence 7654
No 60
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=3e-19 Score=133.94 Aligned_cols=82 Identities=24% Similarity=0.469 Sum_probs=75.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcc--CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEc
Q 020783 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (321)
Q Consensus 3 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~--~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a 80 (321)
..+.++|||+|||+++|+++|+++|++||.|..|.+.. ++.++|||||+|.+.++|++|+..|||..+.|+.|.|.++
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 93 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAIS 93 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 35689999999999999999999999999999999954 5677899999999999999999999999999999999999
Q ss_pred cCCC
Q 020783 81 HGGR 84 (321)
Q Consensus 81 ~~~~ 84 (321)
.+..
T Consensus 94 ~~~~ 97 (100)
T 2do4_A 94 NSGP 97 (100)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 8654
No 61
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=9.7e-19 Score=134.82 Aligned_cols=82 Identities=26% Similarity=0.411 Sum_probs=75.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcc---CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEE
Q 020783 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (321)
Q Consensus 3 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~---~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~ 79 (321)
..+.++|||+|||+++|+++|+++|++||.|..|.|.. ++.++|||||+|.+.++|++|+..||+ .|.|+.|.|.+
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~ 92 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNL 92 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEE
Confidence 45789999999999999999999999999999999954 578899999999999999999999998 89999999999
Q ss_pred ccCCCC
Q 020783 80 AHGGRR 85 (321)
Q Consensus 80 a~~~~~ 85 (321)
+.....
T Consensus 93 a~~~~~ 98 (116)
T 2cqd_A 93 AYLGAK 98 (116)
T ss_dssp STTTCC
T ss_pred cccCCC
Confidence 976543
No 62
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.80 E-value=7.2e-19 Score=132.64 Aligned_cols=79 Identities=20% Similarity=0.418 Sum_probs=73.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEccCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEccCC
Q 020783 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (321)
Q Consensus 4 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a~~~ 83 (321)
.+.++|||+|||+++|+++|+++|++||.|..|.+. ++||||+|.+.++|++|++.|||..|.|+.|.|.++...
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~-----~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 83 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL-----KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPP 83 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC-----SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE-----CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCC
Confidence 467999999999999999999999999999999998 679999999999999999999999999999999999876
Q ss_pred CCCC
Q 020783 84 RRHS 87 (321)
Q Consensus 84 ~~~~ 87 (321)
....
T Consensus 84 ~~~~ 87 (103)
T 2dgu_A 84 DQKR 87 (103)
T ss_dssp CCCC
T ss_pred cccc
Confidence 6443
No 63
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=3.9e-19 Score=133.32 Aligned_cols=81 Identities=20% Similarity=0.228 Sum_probs=73.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEccCCCCCcEEEEEEcCHHHHHHHHHhc--CCcccCCceEEEEEc
Q 020783 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGR--DGYNFDGYRLRVELA 80 (321)
Q Consensus 3 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~~~~~kg~aFVeF~~~e~A~~A~~~l--~g~~i~g~~i~V~~a 80 (321)
..++++|||+|||+++|+++|+++|++||.|..|.|... +|||||+|.+.++|++|++.| ++..+.|+.|.|.++
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~---kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a 88 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG---KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYS 88 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC---CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEc
Confidence 467899999999999999999999999999999998753 899999999999999999976 567899999999999
Q ss_pred cCCCCC
Q 020783 81 HGGRRH 86 (321)
Q Consensus 81 ~~~~~~ 86 (321)
......
T Consensus 89 ~~~~~~ 94 (101)
T 2cq1_A 89 NHKELK 94 (101)
T ss_dssp SCSSCC
T ss_pred CcccCc
Confidence 876543
No 64
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=7e-19 Score=135.14 Aligned_cols=83 Identities=20% Similarity=0.270 Sum_probs=76.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcc--CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEc
Q 020783 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (321)
Q Consensus 3 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~--~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a 80 (321)
..++++|||+|||+++|+++|+++|++||.|..|.|.. ++.++|||||+|.+.++|++|+..|||..|.|+.|.|.++
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 91 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMD 91 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEc
Confidence 46789999999999999999999999999999999954 5677899999999999999999999999999999999998
Q ss_pred cCCCC
Q 020783 81 HGGRR 85 (321)
Q Consensus 81 ~~~~~ 85 (321)
.....
T Consensus 92 ~~~~~ 96 (114)
T 2do0_A 92 ERALP 96 (114)
T ss_dssp SCCCC
T ss_pred ccCCC
Confidence 76543
No 65
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=8.2e-19 Score=132.27 Aligned_cols=84 Identities=24% Similarity=0.436 Sum_probs=76.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEccC-CCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEcc
Q 020783 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIP-PRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (321)
Q Consensus 3 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~~-~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a~ 81 (321)
..+.++|||+|||+++|+++|+++|++||.|..|.|..+ +.++|||||+|.+.++|++|+..|||..|+|+.|.|.++.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 91 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNAT 91 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcc
Confidence 357799999999999999999999999999999999653 3479999999999999999999999999999999999998
Q ss_pred CCCCC
Q 020783 82 GGRRH 86 (321)
Q Consensus 82 ~~~~~ 86 (321)
.....
T Consensus 92 ~~~~~ 96 (103)
T 2cq3_A 92 ARVMT 96 (103)
T ss_dssp SSCCC
T ss_pred cCCCC
Confidence 76543
No 66
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=5.7e-19 Score=134.04 Aligned_cols=83 Identities=24% Similarity=0.440 Sum_probs=76.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcc----CCCCCcEEEEEEcCHHHHHHHHHhc-CCcccCCceEEE
Q 020783 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI----PPRPPGYAFLEFEDYRDAEDAIRGR-DGYNFDGYRLRV 77 (321)
Q Consensus 3 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~----~~~~kg~aFVeF~~~e~A~~A~~~l-~g~~i~g~~i~V 77 (321)
..+.++|||+|||+++|+++|+++|++||.|..|.|+. ++.++|||||+|.+.++|++|+..| ||..|.|+.|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v 91 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVL 91 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEE
Confidence 45779999999999999999999999999999999943 5788999999999999999999999 999999999999
Q ss_pred EEccCCCC
Q 020783 78 ELAHGGRR 85 (321)
Q Consensus 78 ~~a~~~~~ 85 (321)
.++.....
T Consensus 92 ~~a~~~~~ 99 (107)
T 2cph_A 92 EWADSEVT 99 (107)
T ss_dssp EECCCCCC
T ss_pred EeCCCCCC
Confidence 99987653
No 67
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.80 E-value=2.8e-19 Score=130.70 Aligned_cols=81 Identities=26% Similarity=0.481 Sum_probs=73.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEccCC---C-CCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEE
Q 020783 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPP---R-PPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (321)
Q Consensus 4 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~~~---~-~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~ 79 (321)
..+++|||+|||+++|+++|+++|++||.|..+.+..+. . ++|||||+|.+.++|++|+..|||..++|+.|.|.+
T Consensus 2 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 81 (88)
T 4a8x_A 2 MKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATA 81 (88)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEE
Confidence 467899999999999999999999999999999995432 2 799999999999999999999999999999999999
Q ss_pred ccCCC
Q 020783 80 AHGGR 84 (321)
Q Consensus 80 a~~~~ 84 (321)
+.+..
T Consensus 82 a~~~~ 86 (88)
T 4a8x_A 82 VLAPW 86 (88)
T ss_dssp ECCCC
T ss_pred CCCCC
Confidence 87543
No 68
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=1.1e-19 Score=136.38 Aligned_cols=79 Identities=18% Similarity=0.161 Sum_probs=72.0
Q ss_pred CCCCCeEEEcCCCC-CCCHHHHHHHHhccCCeeEEEEccCCCCCcEEEEEEcCHHHHHHHHHhcCCc--ccCCceEEEEE
Q 020783 3 SRSSRTLYVGNLPG-DTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY--NFDGYRLRVEL 79 (321)
Q Consensus 3 ~~~~~~l~V~nLp~-~~te~~L~~~F~~~G~I~~v~l~~~~~~kg~aFVeF~~~e~A~~A~~~l~g~--~i~g~~i~V~~ 79 (321)
..++++|||+|||+ ++|+++|+++|++||.|.+|.|+. .++||||+|++.++|++|++.||+. .|.|+.|.|.+
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~---~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~ 88 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILN---KINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHL 88 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECS---SSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEc---CCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEE
Confidence 46889999999999 999999999999999999999974 3699999999999999999998864 59999999999
Q ss_pred ccCCC
Q 020783 80 AHGGR 84 (321)
Q Consensus 80 a~~~~ 84 (321)
+....
T Consensus 89 a~~~~ 93 (102)
T 1x4d_A 89 SQKYK 93 (102)
T ss_dssp ECCCT
T ss_pred CCCCC
Confidence 98654
No 69
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.79 E-value=2.5e-19 Score=137.93 Aligned_cols=82 Identities=20% Similarity=0.426 Sum_probs=76.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcc---CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEc
Q 020783 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (321)
Q Consensus 4 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~---~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a 80 (321)
.+.++|||+|||+++|+++|+++|++||.|..|.|.. ++.++|||||+|.+.++|++|+..|||..|.|+.|.|.++
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 102 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLK 102 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 4668999999999999999999999999999999954 5778999999999999999999999999999999999999
Q ss_pred cCCCC
Q 020783 81 HGGRR 85 (321)
Q Consensus 81 ~~~~~ 85 (321)
.....
T Consensus 103 ~~~~~ 107 (115)
T 2cpz_A 103 RSKND 107 (115)
T ss_dssp CCSCC
T ss_pred CCCCc
Confidence 87654
No 70
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2.7e-19 Score=135.66 Aligned_cols=81 Identities=25% Similarity=0.502 Sum_probs=75.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcc---CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEc
Q 020783 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (321)
Q Consensus 4 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~---~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a 80 (321)
.++++|||+|||+++|+++|+++|++||.|..|.+.. ++.++|||||+|.+.++|++|+..|||..|.|+.|.|.++
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence 4678899999999999999999999999999999954 4778999999999999999999999999999999999999
Q ss_pred cCCC
Q 020783 81 HGGR 84 (321)
Q Consensus 81 ~~~~ 84 (321)
....
T Consensus 101 ~~~~ 104 (106)
T 1p27_B 101 FVRG 104 (106)
T ss_dssp EESS
T ss_pred cCCC
Confidence 8654
No 71
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2.4e-19 Score=133.08 Aligned_cols=80 Identities=34% Similarity=0.544 Sum_probs=74.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcc---CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEE
Q 020783 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (321)
Q Consensus 3 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~---~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~ 79 (321)
..++++|||+|||+++|+++|+++|++||.|..|.+.. ++.++|||||+|.+.++|++|+..|||..++|+.|.|.+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSG 91 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 35678999999999999999999999999999999954 467899999999999999999999999999999999999
Q ss_pred ccC
Q 020783 80 AHG 82 (321)
Q Consensus 80 a~~ 82 (321)
++.
T Consensus 92 a~~ 94 (95)
T 2cqc_A 92 PSS 94 (95)
T ss_dssp CSC
T ss_pred cCC
Confidence 874
No 72
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=3.8e-19 Score=134.20 Aligned_cols=80 Identities=16% Similarity=0.162 Sum_probs=72.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEccCCCCCcEEEEEEcCHHHHHHHHHhcCCc--ccCCceEEEEEc
Q 020783 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY--NFDGYRLRVELA 80 (321)
Q Consensus 3 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~~~~~kg~aFVeF~~~e~A~~A~~~l~g~--~i~g~~i~V~~a 80 (321)
..|+++|||+|||+++|+++|+++|++||.|..|.|.. .+|||||+|.+.++|++|++.|++. .|.|+.|.|.++
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~---~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a 88 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMP---FKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYS 88 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEET---TTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEC---CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEc
Confidence 35789999999999999999999999999999999874 3899999999999999999988764 599999999999
Q ss_pred cCCCC
Q 020783 81 HGGRR 85 (321)
Q Consensus 81 ~~~~~ 85 (321)
.....
T Consensus 89 ~~~~~ 93 (104)
T 1wex_A 89 TSKRI 93 (104)
T ss_dssp SSSSC
T ss_pred cCccc
Confidence 87654
No 73
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=7.3e-19 Score=134.35 Aligned_cols=82 Identities=21% Similarity=0.438 Sum_probs=76.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcc---CCCCCcEEEEEEcCHHHHHHHHHhcC------CcccCCce
Q 020783 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRD------GYNFDGYR 74 (321)
Q Consensus 4 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~---~~~~kg~aFVeF~~~e~A~~A~~~l~------g~~i~g~~ 74 (321)
.+.++|||+|||+++|+++|+++|++||.|..|.|.. ++.++|||||+|.+.++|++|+..|| |..|+|+.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~ 92 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQ 92 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEE
Confidence 5689999999999999999999999999999999964 47789999999999999999999999 99999999
Q ss_pred EEEEEccCCCC
Q 020783 75 LRVELAHGGRR 85 (321)
Q Consensus 75 i~V~~a~~~~~ 85 (321)
|.|.++.....
T Consensus 93 l~v~~a~~~~~ 103 (111)
T 1x4h_A 93 LKVDLAVTRDE 103 (111)
T ss_dssp EEEECCCCCCC
T ss_pred EEEEECCCCcc
Confidence 99999987654
No 74
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=8.6e-19 Score=129.38 Aligned_cols=78 Identities=36% Similarity=0.635 Sum_probs=73.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEccCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEccC
Q 020783 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (321)
Q Consensus 3 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a~~ 82 (321)
..+.++|||+|||+++|+++|+++|++||.|..|.+. ++||||+|.+.++|++|+..|||..|.|+.|.|.++..
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~-----~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 81 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV-----KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTS 81 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC-----SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE-----CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccC
Confidence 5678999999999999999999999999999999998 66999999999999999999999999999999999987
Q ss_pred CCC
Q 020783 83 GRR 85 (321)
Q Consensus 83 ~~~ 85 (321)
...
T Consensus 82 ~~~ 84 (92)
T 2dgt_A 82 RLR 84 (92)
T ss_dssp CCS
T ss_pred CCC
Confidence 654
No 75
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.79 E-value=6.2e-19 Score=133.40 Aligned_cols=82 Identities=26% Similarity=0.355 Sum_probs=75.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcc--CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCC---ceEEEE
Q 020783 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDG---YRLRVE 78 (321)
Q Consensus 4 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~--~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g---~~i~V~ 78 (321)
.++++|||+|||+++|+++|+++|++||.|..|.|.. ++.++|||||+|.+.++|++|+..|||..+.| +.|.|.
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~ 92 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVK 92 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEE
Confidence 4679999999999999999999999999999999954 56779999999999999999999999999998 999999
Q ss_pred EccCCCC
Q 020783 79 LAHGGRR 85 (321)
Q Consensus 79 ~a~~~~~ 85 (321)
++.....
T Consensus 93 ~a~~~~~ 99 (105)
T 2dnh_A 93 FADTDKE 99 (105)
T ss_dssp ESCSSCC
T ss_pred ECccCcc
Confidence 9987654
No 76
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.79 E-value=2.9e-19 Score=132.62 Aligned_cols=80 Identities=24% Similarity=0.424 Sum_probs=74.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcc--CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEc
Q 020783 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (321)
Q Consensus 3 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~--~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a 80 (321)
..+.++|||+|||+++|+++|+++|++||+|..|.|.. ++.++|||||+|.+.++|++|+..|||..+.|+.|.|.++
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGP 92 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEc
Confidence 45779999999999999999999999999999999954 4677899999999999999999999999999999999998
Q ss_pred cC
Q 020783 81 HG 82 (321)
Q Consensus 81 ~~ 82 (321)
+.
T Consensus 93 ~~ 94 (95)
T 2ywk_A 93 SS 94 (95)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 77
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=7.2e-19 Score=129.24 Aligned_cols=78 Identities=33% Similarity=0.642 Sum_probs=73.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEccCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEccC
Q 020783 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (321)
Q Consensus 3 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a~~ 82 (321)
..+.++|||+|||+++|+++|+++|++||.|..|.+. ++||||+|.+.++|++|+..|||..+.|+.|.|.++..
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 79 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII-----KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKN 79 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE-----TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE-----CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCC
Confidence 4678999999999999999999999999999999998 79999999999999999999999999999999999987
Q ss_pred CCC
Q 020783 83 GRR 85 (321)
Q Consensus 83 ~~~ 85 (321)
...
T Consensus 80 ~~~ 82 (90)
T 2dnq_A 80 KSK 82 (90)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 78
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=4.5e-19 Score=134.00 Aligned_cols=81 Identities=25% Similarity=0.444 Sum_probs=74.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEccC----CCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEE
Q 020783 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIP----PRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVE 78 (321)
Q Consensus 3 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~~----~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~ 78 (321)
..+.++|||+|||+++|+++|+++|++|| |..|.|+.+ +.++|||||+|.+.++|++|+ .|||..|.|+.|.|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 89 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVD 89 (104)
T ss_dssp SSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEE
Confidence 46789999999999999999999999999 999999653 778999999999999999999 899999999999999
Q ss_pred EccCCCC
Q 020783 79 LAHGGRR 85 (321)
Q Consensus 79 ~a~~~~~ 85 (321)
++.....
T Consensus 90 ~a~~~~~ 96 (104)
T 1wi8_A 90 VADQAQD 96 (104)
T ss_dssp ECCCCCC
T ss_pred EccCCCC
Confidence 9987653
No 79
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.79 E-value=5.2e-19 Score=134.06 Aligned_cols=83 Identities=19% Similarity=0.339 Sum_probs=76.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcc---CCCCCcEEEEEEcCHHHHHHHHHhcCCccc---CCceEE
Q 020783 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNF---DGYRLR 76 (321)
Q Consensus 3 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~---~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i---~g~~i~ 76 (321)
..+.++|||+|||+++|+++|+++|++||.|..|.|+. ++.++|||||+|.+.++|++|+..|||..+ .|+.|.
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 89 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQ 89 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEE
Confidence 46789999999999999999999999999999999965 578899999999999999999999999988 899999
Q ss_pred EEEccCCCC
Q 020783 77 VELAHGGRR 85 (321)
Q Consensus 77 V~~a~~~~~ 85 (321)
|.++.....
T Consensus 90 v~~a~~~~~ 98 (106)
T 2dgp_A 90 VKPADSESR 98 (106)
T ss_dssp EEECCCCSC
T ss_pred EEECCcccc
Confidence 999987653
No 80
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.79 E-value=6.1e-20 Score=135.06 Aligned_cols=79 Identities=16% Similarity=0.198 Sum_probs=68.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccC--CeeEEEEcc---CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEcc
Q 020783 7 RTLYVGNLPGDTRMREVEDLFYKYG--PIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (321)
Q Consensus 7 ~~l~V~nLp~~~te~~L~~~F~~~G--~I~~v~l~~---~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a~ 81 (321)
.+|||+|||+++|+++|+++|++|| .|.++.+.. ++.++|||||+|.+.++|++|++.|||..++|+.|.|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 999999843 67889999999999999999999999999999999999988
Q ss_pred CCCC
Q 020783 82 GGRR 85 (321)
Q Consensus 82 ~~~~ 85 (321)
+...
T Consensus 82 ~~~~ 85 (90)
T 3p5t_L 82 KLEH 85 (90)
T ss_dssp ----
T ss_pred CCcc
Confidence 7553
No 81
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.79 E-value=4.7e-19 Score=135.25 Aligned_cols=81 Identities=23% Similarity=0.417 Sum_probs=75.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcc---CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEc
Q 020783 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (321)
Q Consensus 4 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~---~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a 80 (321)
.++++|||+|||+++|+++|+++|++||.|..|.+.. ++.++|||||+|.+.++|++|+..|||..|+|+.|.|.++
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 103 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 103 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEc
Confidence 5678999999999999999999999999999999953 5788999999999999999999999999999999999999
Q ss_pred cCCC
Q 020783 81 HGGR 84 (321)
Q Consensus 81 ~~~~ 84 (321)
....
T Consensus 104 ~~~~ 107 (110)
T 1oo0_B 104 FVKG 107 (110)
T ss_dssp EESS
T ss_pred ccCC
Confidence 8654
No 82
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.78 E-value=1.2e-19 Score=136.19 Aligned_cols=81 Identities=23% Similarity=0.347 Sum_probs=74.8
Q ss_pred CCCCCeEEEcCCCC------CCCHHHHHHHHhccCCeeEEEEcc---CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCC-
Q 020783 3 SRSSRTLYVGNLPG------DTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDG- 72 (321)
Q Consensus 3 ~~~~~~l~V~nLp~------~~te~~L~~~F~~~G~I~~v~l~~---~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g- 72 (321)
+..+++|||+|||+ ++++++|+++|++||.|..|.|+. ++.++|||||+|.+.++|++|++.|||..|.|
T Consensus 3 ~~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~ 82 (100)
T 3ns6_A 3 LGSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLK 82 (100)
T ss_dssp SCGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred CCcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence 34578999999999 999999999999999999999953 57889999999999999999999999999999
Q ss_pred ceEEEEEccCC
Q 020783 73 YRLRVELAHGG 83 (321)
Q Consensus 73 ~~i~V~~a~~~ 83 (321)
+.|.|.++.+.
T Consensus 83 r~l~V~~a~~~ 93 (100)
T 3ns6_A 83 HRLFLYTMKDV 93 (100)
T ss_dssp CBCEEEESHHH
T ss_pred eEEEEEECchh
Confidence 99999998753
No 83
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=1.9e-18 Score=131.44 Aligned_cols=79 Identities=23% Similarity=0.310 Sum_probs=73.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEccCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCC-----ceEEE
Q 020783 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDG-----YRLRV 77 (321)
Q Consensus 3 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g-----~~i~V 77 (321)
.++.++|||+|||+++|+++|+++|++||+|..|.|..+ |||||+|.+.++|++|++.|||..|.| +.|.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~----g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V 87 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRV 87 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT----TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC----CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEE
Confidence 356799999999999999999999999999999999864 899999999999999999999999999 99999
Q ss_pred EEccCCCC
Q 020783 78 ELAHGGRR 85 (321)
Q Consensus 78 ~~a~~~~~ 85 (321)
.++.....
T Consensus 88 ~~a~~~~~ 95 (108)
T 1x4c_A 88 KVDGPRSP 95 (108)
T ss_dssp EESSCCSC
T ss_pred EeCCCCCC
Confidence 99987553
No 84
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.78 E-value=4.3e-19 Score=132.83 Aligned_cols=79 Identities=29% Similarity=0.420 Sum_probs=73.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeE--------EEEc---cCCCCCcEEEEEEcCHHHHHHHHHhcCCcccC
Q 020783 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVD--------IDLK---IPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFD 71 (321)
Q Consensus 3 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~--------v~l~---~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~ 71 (321)
..+.++|||+|||+++|+++|+++|++||.|.. +.+. .++.++|||||+|.+.++|++|++.|||..+.
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~ 89 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 89 (99)
T ss_dssp CCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 357899999999999999999999999999999 8884 35788999999999999999999999999999
Q ss_pred CceEEEEEcc
Q 020783 72 GYRLRVELAH 81 (321)
Q Consensus 72 g~~i~V~~a~ 81 (321)
|+.|.|++|+
T Consensus 90 g~~l~V~~A~ 99 (99)
T 2la6_A 90 GNPIKVSFAT 99 (99)
T ss_dssp SSBCEEEECC
T ss_pred CcEEEEEecC
Confidence 9999999974
No 85
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=8.5e-19 Score=130.73 Aligned_cols=79 Identities=27% Similarity=0.501 Sum_probs=73.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEccCCCCCcEEEEEEcCHHHHHHHHHhcCCcccC--CceEEEEEc
Q 020783 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFD--GYRLRVELA 80 (321)
Q Consensus 3 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~--g~~i~V~~a 80 (321)
..++++|||+|||+++|+++|+++|++||.|..|.+... +|||||+|.+.++|++|++.|||..+. |+.|.|.++
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a 90 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG---DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFA 90 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS---SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC---CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEEC
Confidence 357799999999999999999999999999999999743 889999999999999999999999999 999999999
Q ss_pred cCCC
Q 020783 81 HGGR 84 (321)
Q Consensus 81 ~~~~ 84 (321)
.+..
T Consensus 91 ~~~~ 94 (97)
T 1why_A 91 KSGP 94 (97)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8654
No 86
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.78 E-value=4.5e-19 Score=137.09 Aligned_cols=79 Identities=20% Similarity=0.450 Sum_probs=73.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcc---CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEE
Q 020783 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (321)
Q Consensus 3 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~---~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~ 79 (321)
..+.++|||+|||+++|+++|+++|++||.|..|.|.. ++.++|||||+|.+.++|++|++.|||..|+|+.|.|++
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 45679999999999999999999999999999999954 578899999999999999999999999999999999999
Q ss_pred cc
Q 020783 80 AH 81 (321)
Q Consensus 80 a~ 81 (321)
++
T Consensus 117 ak 118 (118)
T 2khc_A 117 KK 118 (118)
T ss_dssp C-
T ss_pred cC
Confidence 74
No 87
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.78 E-value=9.3e-19 Score=132.01 Aligned_cols=81 Identities=27% Similarity=0.520 Sum_probs=74.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcc---CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEE
Q 020783 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (321)
Q Consensus 3 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~---~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~ 79 (321)
..+.++|||+|||+++|+++|+++|++|| |..|.|+. ++.++|||||+|.+.++|++|+ .|||..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 89 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDI 89 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEE
Confidence 46789999999999999999999999997 99999954 4778999999999999999999 7999999999999999
Q ss_pred ccCCCC
Q 020783 80 AHGGRR 85 (321)
Q Consensus 80 a~~~~~ 85 (321)
+.....
T Consensus 90 a~~~~~ 95 (103)
T 2dng_A 90 AEGRKQ 95 (103)
T ss_dssp CCCCCC
T ss_pred ecCCCC
Confidence 987653
No 88
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.78 E-value=5.3e-19 Score=134.81 Aligned_cols=80 Identities=18% Similarity=0.186 Sum_probs=72.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccC-CeeEEEEccCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEccC
Q 020783 4 RSSRTLYVGNLPGDTRMREVEDLFYKYG-PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (321)
Q Consensus 4 ~~~~~l~V~nLp~~~te~~L~~~F~~~G-~I~~v~l~~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a~~ 82 (321)
...++|||+|||+++|+++|+++|++|| +|..+.+.. ..++|||||+|.+.++|++|++.|||..|+|+.|.|.++..
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~-~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~ 104 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT-RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDN 104 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS-CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc-CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCC
Confidence 4567999999999999999999999999 999999853 35799999999999999999999999999999999999875
Q ss_pred CC
Q 020783 83 GR 84 (321)
Q Consensus 83 ~~ 84 (321)
..
T Consensus 105 ~p 106 (111)
T 2jvr_A 105 PP 106 (111)
T ss_dssp --
T ss_pred CC
Confidence 43
No 89
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.78 E-value=9.3e-19 Score=128.24 Aligned_cols=79 Identities=25% Similarity=0.487 Sum_probs=73.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcc---CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEcc
Q 020783 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (321)
Q Consensus 5 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~---~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a~ 81 (321)
+.++|||+|||+++|+++|+++|++||.|..+.+.. ++.++|||||+|.+.++|++|+ .|||..+.|+.|.|.+++
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 468999999999999999999999999999999953 6788999999999999999999 899999999999999987
Q ss_pred CCC
Q 020783 82 GGR 84 (321)
Q Consensus 82 ~~~ 84 (321)
...
T Consensus 84 ~~~ 86 (89)
T 3ucg_A 84 TNR 86 (89)
T ss_dssp TTS
T ss_pred CCC
Confidence 643
No 90
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=9.3e-19 Score=128.66 Aligned_cols=78 Identities=31% Similarity=0.570 Sum_probs=73.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEccCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEccC
Q 020783 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (321)
Q Consensus 3 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a~~ 82 (321)
..+.++|||+|||+++|+++|+++|++||.|..|.+. ++||||+|.+.++|++|+..|||..+.|+.|.|.++..
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~-----~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 80 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV-----KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTK 80 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC-----SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCC
Confidence 4678999999999999999999999999999999998 66999999999999999999999999999999999987
Q ss_pred CCC
Q 020783 83 GRR 85 (321)
Q Consensus 83 ~~~ 85 (321)
...
T Consensus 81 ~~~ 83 (90)
T 2dnp_A 81 GQK 83 (90)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
No 91
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.78 E-value=4.4e-19 Score=135.00 Aligned_cols=81 Identities=27% Similarity=0.457 Sum_probs=75.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEc---cCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEE
Q 020783 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLK---IPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (321)
Q Consensus 3 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~---~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~ 79 (321)
..++++|||+|||+++|+++|+++|++||.|..|.+. .++.++|||||+|.+.++|++|++.|||..|+|+.|.|.+
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 102 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGH 102 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 4577999999999999999999999999999999995 3577899999999999999999999999999999999999
Q ss_pred ccCC
Q 020783 80 AHGG 83 (321)
Q Consensus 80 a~~~ 83 (321)
+...
T Consensus 103 a~~k 106 (108)
T 2jrs_A 103 VTER 106 (108)
T ss_dssp SCSS
T ss_pred cccC
Confidence 8764
No 92
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.78 E-value=6.4e-19 Score=133.78 Aligned_cols=79 Identities=24% Similarity=0.395 Sum_probs=73.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcc--CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEc
Q 020783 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (321)
Q Consensus 3 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~--~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a 80 (321)
..+.++|||+|||+++|+++|+++|++||.|..|.|.. ++.++|||||+|.+.++|++|+..|||..|.|+.|.|.++
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 105 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLV 105 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 35689999999999999999999999999999999953 6778999999999999999999999999999999999997
Q ss_pred c
Q 020783 81 H 81 (321)
Q Consensus 81 ~ 81 (321)
.
T Consensus 106 ~ 106 (107)
T 3ulh_A 106 T 106 (107)
T ss_dssp C
T ss_pred C
Confidence 5
No 93
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.78 E-value=9.6e-19 Score=127.67 Aligned_cols=77 Identities=27% Similarity=0.551 Sum_probs=71.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcc---CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEE
Q 020783 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (321)
Q Consensus 3 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~---~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~ 79 (321)
..+.++|||+|||+++|+++|+++|++||.|..|.++. ++.++|||||+|.+.++|++|+. +++..++|+.|.|++
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKK 86 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEe
Confidence 46789999999999999999999999999999999953 57889999999999999999997 688899999999987
Q ss_pred c
Q 020783 80 A 80 (321)
Q Consensus 80 a 80 (321)
|
T Consensus 87 A 87 (87)
T 3s7r_A 87 A 87 (87)
T ss_dssp C
T ss_pred C
Confidence 5
No 94
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.78 E-value=4.3e-19 Score=139.44 Aligned_cols=82 Identities=34% Similarity=0.570 Sum_probs=76.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcc---CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEE
Q 020783 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (321)
Q Consensus 3 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~---~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~ 79 (321)
..++++|||+|||+++|+++|+++|++||+|..|.|.. ++.++|||||+|.+.++|++|+..|||..|+|+.|.|.+
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~ 122 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDF 122 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 35789999999999999999999999999999999964 578899999999999999999999999999999999999
Q ss_pred ccCCC
Q 020783 80 AHGGR 84 (321)
Q Consensus 80 a~~~~ 84 (321)
+...+
T Consensus 123 a~~~~ 127 (129)
T 2kxn_B 123 SITKR 127 (129)
T ss_dssp CSSSS
T ss_pred ecCCC
Confidence 88654
No 95
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.78 E-value=7.3e-19 Score=133.10 Aligned_cols=81 Identities=27% Similarity=0.415 Sum_probs=74.7
Q ss_pred CCCCeEEEcCCCCCC------CHHHHHHHHhccCCeeEEEEc-cCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCc-eE
Q 020783 4 RSSRTLYVGNLPGDT------RMREVEDLFYKYGPIVDIDLK-IPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGY-RL 75 (321)
Q Consensus 4 ~~~~~l~V~nLp~~~------te~~L~~~F~~~G~I~~v~l~-~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~-~i 75 (321)
..+++|||+|||+.+ |+++|+++|++||.|..|.|+ .++.++|||||+|.+.++|++|+..|||..|+|+ .|
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l 92 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 92 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEE
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceE
Confidence 457899999999999 789999999999999999995 4678899999999999999999999999999998 99
Q ss_pred EEEEccCCC
Q 020783 76 RVELAHGGR 84 (321)
Q Consensus 76 ~V~~a~~~~ 84 (321)
.|.++....
T Consensus 93 ~V~~a~~~~ 101 (105)
T 2nlw_A 93 RVNLFTDFD 101 (105)
T ss_dssp EEECSCCCC
T ss_pred EEEEcchHh
Confidence 999987544
No 96
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=4.9e-19 Score=133.44 Aligned_cols=78 Identities=15% Similarity=0.398 Sum_probs=72.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcc--CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEcc
Q 020783 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (321)
Q Consensus 4 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~--~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a~ 81 (321)
.+.++|||+|||+++|+++|.++|++||+|.+|.|+. ++.++|||||+|.+.++|++|+. +||..|+|+.|.|.++.
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~ 87 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKD 87 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEch
Confidence 4678999999999999999999999999999999964 37789999999999999999999 99999999999999876
Q ss_pred C
Q 020783 82 G 82 (321)
Q Consensus 82 ~ 82 (321)
.
T Consensus 88 ~ 88 (103)
T 1s79_A 88 D 88 (103)
T ss_dssp H
T ss_pred H
Confidence 4
No 97
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.78 E-value=7.3e-19 Score=137.55 Aligned_cols=84 Identities=25% Similarity=0.485 Sum_probs=76.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcc---CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEE
Q 020783 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (321)
Q Consensus 3 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~---~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~ 79 (321)
..++++|||+|||+++|+++|.++|++||.|..|.|+. ++.++|||||+|.+.++|++|++.|||..|.|+.|.|.+
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 98 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 98 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 35678999999999999999999999999999999953 678899999999999999999999999999999999999
Q ss_pred ccCCCCC
Q 020783 80 AHGGRRH 86 (321)
Q Consensus 80 a~~~~~~ 86 (321)
+......
T Consensus 99 a~~~~~~ 105 (126)
T 3ex7_B 99 CFVRGPP 105 (126)
T ss_dssp SEESSSC
T ss_pred ecCCCCC
Confidence 9876543
No 98
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.78 E-value=1.3e-18 Score=129.80 Aligned_cols=76 Identities=26% Similarity=0.506 Sum_probs=72.0
Q ss_pred CCCCCeEEEcCCCC-CCCHHHHHHHHhccCCeeEEEEccCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEcc
Q 020783 3 SRSSRTLYVGNLPG-DTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (321)
Q Consensus 3 ~~~~~~l~V~nLp~-~~te~~L~~~F~~~G~I~~v~l~~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a~ 81 (321)
..++++|||+|||+ ++|+++|+++|++||.|..|.+. +|||||+|.+.++|++|+..|||..++|+.|.|++++
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~-----~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 93 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-----NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSS 93 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC-----SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-----CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecC
Confidence 46789999999998 99999999999999999999995 8999999999999999999999999999999999987
Q ss_pred CC
Q 020783 82 GG 83 (321)
Q Consensus 82 ~~ 83 (321)
..
T Consensus 94 ~~ 95 (97)
T 2xnq_A 94 SN 95 (97)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 99
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=7.9e-19 Score=134.64 Aligned_cols=83 Identities=27% Similarity=0.464 Sum_probs=76.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCee--------EEEEcc---CCCCCcEEEEEEcCHHHHHHHHHhcCCcccC
Q 020783 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIV--------DIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFD 71 (321)
Q Consensus 3 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~--------~v~l~~---~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~ 71 (321)
..+.++|||+|||+++|+++|+++|++||.|. .|.|.. ++.++|||||+|.+.++|++|+..|||..|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 45789999999999999999999999999999 588853 5788999999999999999999999999999
Q ss_pred CceEEEEEccCCCC
Q 020783 72 GYRLRVELAHGGRR 85 (321)
Q Consensus 72 g~~i~V~~a~~~~~ 85 (321)
|+.|.|.++.....
T Consensus 92 g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 92 GSKLKVSLARKKPP 105 (113)
T ss_dssp TEECEEECSSCCCC
T ss_pred CCEEEEEECCCCCC
Confidence 99999999987653
No 100
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.78 E-value=1.8e-18 Score=137.70 Aligned_cols=84 Identities=31% Similarity=0.581 Sum_probs=76.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcc---CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEE
Q 020783 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (321)
Q Consensus 3 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~---~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~ 79 (321)
..+.++|||+|||+++|+++|+++|+.||+|..|.|.. ++.++|||||+|.+.++|++|+..|||..|.|+.|.|.+
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 118 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVAL 118 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 35678999999999999999999999999999999953 567899999999999999999999999999999999999
Q ss_pred ccCCCCC
Q 020783 80 AHGGRRH 86 (321)
Q Consensus 80 a~~~~~~ 86 (321)
+......
T Consensus 119 a~~~~~~ 125 (139)
T 1u6f_A 119 AASGHQR 125 (139)
T ss_dssp SSCCCCC
T ss_pred CCCCCCC
Confidence 9876543
No 101
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=9.1e-19 Score=132.23 Aligned_cols=83 Identities=22% Similarity=0.331 Sum_probs=76.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhc-cCCeeEEEEcc--CCCCCcEEEEEEcCHHHHHHHHHhcCCcc-cCCceEEEE
Q 020783 3 SRSSRTLYVGNLPGDTRMREVEDLFYK-YGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYN-FDGYRLRVE 78 (321)
Q Consensus 3 ~~~~~~l~V~nLp~~~te~~L~~~F~~-~G~I~~v~l~~--~~~~kg~aFVeF~~~e~A~~A~~~l~g~~-i~g~~i~V~ 78 (321)
..++++|||+|||+++|+++|+++|++ ||.|..|.|.. ++.++|||||+|.+.++|++|+..|||.. ++|+.|.|.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~ 85 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLS 85 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEE
Confidence 467899999999999999999999999 99999999954 67889999999999999999999999999 999999999
Q ss_pred EccCCCC
Q 020783 79 LAHGGRR 85 (321)
Q Consensus 79 ~a~~~~~ 85 (321)
++.....
T Consensus 86 ~a~~~~~ 92 (104)
T 2dhg_A 86 VAIPKAS 92 (104)
T ss_dssp BCCCCCS
T ss_pred EccCCCc
Confidence 9976553
No 102
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=8.4e-19 Score=133.69 Aligned_cols=81 Identities=25% Similarity=0.464 Sum_probs=74.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcc-CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEcc
Q 020783 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI-PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (321)
Q Consensus 3 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~-~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a~ 81 (321)
..+.++|||+|||+++|+++|+++|++||.|..|.+.. .+.++|||||+|.+.++|++|+..|||..++|+.|.|.++.
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 105 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNAT 105 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 35679999999999999999999999999999999964 34579999999999999999999999999999999999987
Q ss_pred CC
Q 020783 82 GG 83 (321)
Q Consensus 82 ~~ 83 (321)
..
T Consensus 106 ~~ 107 (109)
T 2err_A 106 AR 107 (109)
T ss_dssp CS
T ss_pred CC
Confidence 64
No 103
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=4.4e-19 Score=135.75 Aligned_cols=81 Identities=22% Similarity=0.286 Sum_probs=74.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHH---HHHhccCCeeEEEEccC------CCCCcEEEEEEcCHHHHHHHHHhcCCcccCCce
Q 020783 4 RSSRTLYVGNLPGDTRMREVE---DLFYKYGPIVDIDLKIP------PRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYR 74 (321)
Q Consensus 4 ~~~~~l~V~nLp~~~te~~L~---~~F~~~G~I~~v~l~~~------~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~ 74 (321)
.+.++|||+|||+++|+++|. ++|++||+|..|.|..+ +.++|||||+|.+.++|++|++.|||..|+|+.
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 467899999999999999999 99999999999999543 256699999999999999999999999999999
Q ss_pred EEEEEccCCC
Q 020783 75 LRVELAHGGR 84 (321)
Q Consensus 75 i~V~~a~~~~ 84 (321)
|.|.++....
T Consensus 93 l~V~~a~~k~ 102 (111)
T 2cpi_A 93 LKASLGTTKY 102 (111)
T ss_dssp EEEESCCCCS
T ss_pred EEEEeccccc
Confidence 9999998655
No 104
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.77 E-value=3.9e-19 Score=128.07 Aligned_cols=72 Identities=29% Similarity=0.494 Sum_probs=67.2
Q ss_pred CCeEEEcCCCCCC------CHHHHHHHHhccCCeeEEEEc-cCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCc-eEEE
Q 020783 6 SRTLYVGNLPGDT------RMREVEDLFYKYGPIVDIDLK-IPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGY-RLRV 77 (321)
Q Consensus 6 ~~~l~V~nLp~~~------te~~L~~~F~~~G~I~~v~l~-~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~-~i~V 77 (321)
+++|||+|||+++ |+++|+++|++||+|..|.++ .++.++|||||+|.+.++|++|+..|||..++|+ .|.|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 4799999999999 789999999999999999995 4678899999999999999999999999999999 8876
No 105
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=2.8e-19 Score=136.03 Aligned_cols=79 Identities=25% Similarity=0.275 Sum_probs=72.0
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHHHHhccCCeeEEEEccCCCCCcEEEEEEcCHHHHHHHHHhcC--CcccCCceEEEEE
Q 020783 3 SRSSRTLYVGNLPGD-TRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRD--GYNFDGYRLRVEL 79 (321)
Q Consensus 3 ~~~~~~l~V~nLp~~-~te~~L~~~F~~~G~I~~v~l~~~~~~kg~aFVeF~~~e~A~~A~~~l~--g~~i~g~~i~V~~ 79 (321)
..++++|||+|||++ +|+++|+++|++||+|.+|.|.. ++|||||+|.+.++|++|+..|| +..|.|+.|.|.+
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~---~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~ 98 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR---MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDL 98 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET---TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec---CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 568899999999998 99999999999999999999963 58999999999999999999886 4669999999999
Q ss_pred ccCCC
Q 020783 80 AHGGR 84 (321)
Q Consensus 80 a~~~~ 84 (321)
+....
T Consensus 99 a~~~~ 103 (112)
T 1x4f_A 99 SEKYK 103 (112)
T ss_dssp ECSCS
T ss_pred Ccccc
Confidence 98654
No 106
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2.7e-18 Score=130.72 Aligned_cols=83 Identities=23% Similarity=0.316 Sum_probs=75.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCC-eeEEEEc-c---CCCCCcEEEEEEcCHHHHHHHHHhcC--CcccCCceE
Q 020783 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGP-IVDIDLK-I---PPRPPGYAFLEFEDYRDAEDAIRGRD--GYNFDGYRL 75 (321)
Q Consensus 3 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~-I~~v~l~-~---~~~~kg~aFVeF~~~e~A~~A~~~l~--g~~i~g~~i 75 (321)
+.+.++|||+|||+++|+++|+++|++||. |..|.++ . ++.++|||||+|.+.++|++|+..|| +..+.|+.|
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 567899999999999999999999999998 9999996 3 45789999999999999999999996 589999999
Q ss_pred EEEEccCCCC
Q 020783 76 RVELAHGGRR 85 (321)
Q Consensus 76 ~V~~a~~~~~ 85 (321)
.|.++.+...
T Consensus 85 ~V~~a~~~~~ 94 (109)
T 2dis_A 85 AVDWAEPEID 94 (109)
T ss_dssp EEEESCSSCS
T ss_pred EEEEcCCCCC
Confidence 9999987654
No 107
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.3e-18 Score=133.89 Aligned_cols=81 Identities=23% Similarity=0.414 Sum_probs=74.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCe----eEEEEccCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEE
Q 020783 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPI----VDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (321)
Q Consensus 4 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I----~~v~l~~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~ 79 (321)
.++++|||+|||+++|+++|+++|++||.| ..+.+. ++.++|||||+|.+.++|++|+..|||..|.|+.|.|.+
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~-~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 101 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM-TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEF 101 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE-CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC-CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 467999999999999999999999999998 555555 788999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 020783 80 AHGGRR 85 (321)
Q Consensus 80 a~~~~~ 85 (321)
+.....
T Consensus 102 a~~~~~ 107 (115)
T 2cpx_A 102 GKNKKQ 107 (115)
T ss_dssp CCCCSC
T ss_pred ccCCCC
Confidence 987654
No 108
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=5e-19 Score=133.64 Aligned_cols=80 Identities=35% Similarity=0.664 Sum_probs=74.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEc---cCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEcc
Q 020783 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLK---IPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (321)
Q Consensus 5 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~---~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a~ 81 (321)
+.++|||+|||+++|+++|+++|++||.|..|.+. .++.++|||||+|.+.++|++|++.|||..+.|+.|.|.++.
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 56899999999999999999999999999999995 357789999999999999999999999999999999999998
Q ss_pred CCC
Q 020783 82 GGR 84 (321)
Q Consensus 82 ~~~ 84 (321)
...
T Consensus 87 ~~~ 89 (104)
T 1p1t_A 87 SEK 89 (104)
T ss_dssp CTT
T ss_pred Ccc
Confidence 654
No 109
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.77 E-value=2.3e-18 Score=131.24 Aligned_cols=81 Identities=17% Similarity=0.349 Sum_probs=72.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcc---CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEc
Q 020783 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (321)
Q Consensus 4 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~---~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a 80 (321)
.+.++|||+|||+++|+++|+++|++||.|..|.|.. ++.++|||||+|.+.++|++|+..+ |..++|+.|.|.++
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~a 101 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKVA 101 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEEc
Confidence 5679999999999999999999999999999999954 4788999999999999999999966 59999999999999
Q ss_pred cCCCC
Q 020783 81 HGGRR 85 (321)
Q Consensus 81 ~~~~~ 85 (321)
.....
T Consensus 102 ~~~~~ 106 (109)
T 2rs2_A 102 FPRRA 106 (109)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 86553
No 110
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2.4e-18 Score=131.11 Aligned_cols=80 Identities=21% Similarity=0.383 Sum_probs=74.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEccCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEccC
Q 020783 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (321)
Q Consensus 3 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a~~ 82 (321)
..+.++|||+|||+++|+++|+++|++||.|..|.|..+ +|||||+|.+.++|++|+..|||..|.|+.|.|.++..
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~---~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 98 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE---KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKE 98 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC---CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCC
Confidence 346789999999999999999999999999999999754 89999999999999999999999999999999999987
Q ss_pred CCC
Q 020783 83 GRR 85 (321)
Q Consensus 83 ~~~ 85 (321)
...
T Consensus 99 ~~~ 101 (109)
T 1x4g_A 99 SPD 101 (109)
T ss_dssp CCS
T ss_pred CCC
Confidence 653
No 111
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=5.5e-19 Score=131.95 Aligned_cols=80 Identities=23% Similarity=0.337 Sum_probs=72.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEE---ccCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEc
Q 020783 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDL---KIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (321)
Q Consensus 4 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l---~~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a 80 (321)
...++|||+|||+++|+++|+++|++||.|..+.+ ..++.++|||||+|.+.++|++|++.|||..|.|+.|.|+++
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 45689999999999999999999999999986655 346788999999999999999999999999999999999998
Q ss_pred cCC
Q 020783 81 HGG 83 (321)
Q Consensus 81 ~~~ 83 (321)
...
T Consensus 93 ~~~ 95 (98)
T 2cqp_A 93 SGP 95 (98)
T ss_dssp SCS
T ss_pred CCC
Confidence 754
No 112
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2e-19 Score=130.74 Aligned_cols=79 Identities=22% Similarity=0.333 Sum_probs=72.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcc---CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEE
Q 020783 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (321)
Q Consensus 3 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~---~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~ 79 (321)
..++++|||+|||+++|+++|+++|++||.|..|.+.. ++.++|||||+|.+.++|++|+..|||..+.|+.|+|.+
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~ 81 (85)
T 1x4e_A 2 SSGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSG 81 (85)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecC
Confidence 46889999999999999999999999999999999954 578899999999999999999999999999999988766
Q ss_pred cc
Q 020783 80 AH 81 (321)
Q Consensus 80 a~ 81 (321)
+.
T Consensus 82 ~~ 83 (85)
T 1x4e_A 82 PS 83 (85)
T ss_dssp CC
T ss_pred CC
Confidence 44
No 113
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=1.6e-18 Score=130.15 Aligned_cols=80 Identities=26% Similarity=0.431 Sum_probs=71.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEccCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEccCC
Q 020783 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (321)
Q Consensus 4 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a~~~ 83 (321)
.+.++|||+|||+++|+++|+++|++||.|. +....++.++|||||+|.+.++|++|+..|||..|.|+.|.|.++...
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~-~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 91 (101)
T 2fc9_A 13 GESKTLVLSNLSYSATEETLQEVFEKATFIK-VPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPR 91 (101)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHCSSCSEEE-CCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECSSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCEEE-EEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcCCC
Confidence 5789999999999999999999999999883 222346788999999999999999999999999999999999999876
Q ss_pred C
Q 020783 84 R 84 (321)
Q Consensus 84 ~ 84 (321)
.
T Consensus 92 ~ 92 (101)
T 2fc9_A 92 G 92 (101)
T ss_dssp C
T ss_pred C
Confidence 4
No 114
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=1.6e-18 Score=125.88 Aligned_cols=76 Identities=28% Similarity=0.460 Sum_probs=71.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEccCCCCCcEEEEEEcCHHHHHHHHHhc-CCcccCCceEEEEEcc
Q 020783 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGR-DGYNFDGYRLRVELAH 81 (321)
Q Consensus 3 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~~~~~kg~aFVeF~~~e~A~~A~~~l-~g~~i~g~~i~V~~a~ 81 (321)
..+.++|||+|||+++|+++|+++|++||.|..|.+.. ++|||||+|.+.++|++|+..| ||..++|+.|.|.+++
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~---~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQ---RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEG---GGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEEC---CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 35678999999999999999999999999999999974 4899999999999999999998 9999999999999974
No 115
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.77 E-value=6.8e-19 Score=124.74 Aligned_cols=72 Identities=22% Similarity=0.376 Sum_probs=67.7
Q ss_pred eEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcc---CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEc
Q 020783 8 TLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (321)
Q Consensus 8 ~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~---~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a 80 (321)
+|||+|||+++|+++|+++|++||.|..|.++. ++.++|||||+|.+.++|++|++ |||..++|+.|.|++|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 599999999999999999999999999999954 57889999999999999999998 9999999999999875
No 116
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=1.6e-18 Score=129.79 Aligned_cols=78 Identities=32% Similarity=0.464 Sum_probs=73.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEccCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEccCC
Q 020783 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (321)
Q Consensus 4 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a~~~ 83 (321)
.+.++|||+|||+++|+++|+++|++||.|..|.+.. .+|||||+|.+.++|++|++.|||..|.|+.|.|.++...
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~---~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 89 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHK---DKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHS 89 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEET---TTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEec---CCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCC
Confidence 5678999999999999999999999999999999974 3899999999999999999999999999999999999875
Q ss_pred C
Q 020783 84 R 84 (321)
Q Consensus 84 ~ 84 (321)
.
T Consensus 90 ~ 90 (99)
T 2cpj_A 90 A 90 (99)
T ss_dssp S
T ss_pred C
Confidence 5
No 117
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.77 E-value=1e-18 Score=130.03 Aligned_cols=78 Identities=26% Similarity=0.490 Sum_probs=72.3
Q ss_pred CCCCCeEEEcCCCC-CCCHHHHHHHHhccCCeeEEEEccCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEcc
Q 020783 3 SRSSRTLYVGNLPG-DTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (321)
Q Consensus 3 ~~~~~~l~V~nLp~-~~te~~L~~~F~~~G~I~~v~l~~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a~ 81 (321)
..++++|||+|||+ ++|+++|+++|++||.|..|.+. +|||||+|.+.++|++|+..|||..+.|+.|.|.++.
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 81 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-----NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSS 81 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE-----TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-----CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcC
Confidence 46889999999998 99999999999999999999996 8999999999999999999999999999999999998
Q ss_pred CCCC
Q 020783 82 GGRR 85 (321)
Q Consensus 82 ~~~~ 85 (321)
....
T Consensus 82 ~~~~ 85 (96)
T 2kvi_A 82 SNAR 85 (96)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 6553
No 118
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.7e-18 Score=131.78 Aligned_cols=81 Identities=15% Similarity=0.218 Sum_probs=73.2
Q ss_pred CCCCCCeEEE--cCCCCCCCHHHHHHHHhccCCeeEEEEccCCCCCcEEEEEEcCHHHHHHHHHhcCCccc-----CCce
Q 020783 2 SSRSSRTLYV--GNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNF-----DGYR 74 (321)
Q Consensus 2 ~~~~~~~l~V--~nLp~~~te~~L~~~F~~~G~I~~v~l~~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i-----~g~~ 74 (321)
...|+++||| |||++++|+++|+++|++||.|..|.|.. .+|||||+|.+.++|++|++.|||..+ .|++
T Consensus 21 ~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~---~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~ 97 (114)
T 2cq2_A 21 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP---NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKIT 97 (114)
T ss_dssp CSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT---TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEE
T ss_pred CCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC---CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcE
Confidence 4578899999 78999999999999999999999998863 389999999999999999999999988 6899
Q ss_pred EEEEEccCCCC
Q 020783 75 LRVELAHGGRR 85 (321)
Q Consensus 75 i~V~~a~~~~~ 85 (321)
|.|.++.....
T Consensus 98 l~v~~a~~~p~ 108 (114)
T 2cq2_A 98 LYLNFVEKVQW 108 (114)
T ss_dssp CEEEEESCCCC
T ss_pred EEEEecccCcc
Confidence 99999886543
No 119
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=3.8e-18 Score=127.64 Aligned_cols=77 Identities=30% Similarity=0.439 Sum_probs=72.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcc--CCeeEEEEccCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEcc
Q 020783 4 RSSRTLYVGNLPGDTRMREVEDLFYKY--GPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (321)
Q Consensus 4 ~~~~~l~V~nLp~~~te~~L~~~F~~~--G~I~~v~l~~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a~ 81 (321)
.+.++|||+|||+++|+++|+++|++| |.|..|.+. +|||||+|.+.++|++|+..|||..|.|+.|.|.++.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 87 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI-----RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAK 87 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC-----SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCC
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe-----CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 567899999999999999999999999 999999886 7899999999999999999999999999999999998
Q ss_pred CCCC
Q 020783 82 GGRR 85 (321)
Q Consensus 82 ~~~~ 85 (321)
....
T Consensus 88 ~~~~ 91 (99)
T 2cpd_A 88 PVDK 91 (99)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7553
No 120
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.77 E-value=2.7e-18 Score=133.95 Aligned_cols=84 Identities=23% Similarity=0.347 Sum_probs=77.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcc--CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEcc
Q 020783 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (321)
Q Consensus 4 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~--~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a~ 81 (321)
.++++|||+|||+++|+++|+++|++||.|..|.+.. ++.++|||||+|.+.++|++|+..|||..|+|+.|.|.+|.
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 112 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 112 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeC
Confidence 5678999999999999999999999999999999954 57789999999999999999999999999999999999998
Q ss_pred CCCCCC
Q 020783 82 GGRRHS 87 (321)
Q Consensus 82 ~~~~~~ 87 (321)
.....+
T Consensus 113 ~~~~~~ 118 (124)
T 2kt5_A 113 SQIDLE 118 (124)
T ss_dssp CTTCCC
T ss_pred CCCCCC
Confidence 765433
No 121
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=1.1e-18 Score=130.11 Aligned_cols=79 Identities=30% Similarity=0.487 Sum_probs=71.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEccCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEccCC
Q 020783 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (321)
Q Consensus 4 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a~~~ 83 (321)
..+++|||+|||+++|+++|+++|++||.|. +.+. ++.++|||||+|.+.++|++|+..|||..|+|+.|.|.++...
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 94 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLT-WQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQQ 94 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEE-EETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCCC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEE-cCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCC
Confidence 3479999999999999999999999999996 5554 3577999999999999999999999999999999999999865
Q ss_pred C
Q 020783 84 R 84 (321)
Q Consensus 84 ~ 84 (321)
.
T Consensus 95 ~ 95 (97)
T 2e5j_A 95 R 95 (97)
T ss_dssp C
T ss_pred C
Confidence 4
No 122
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=8.4e-19 Score=132.69 Aligned_cols=82 Identities=20% Similarity=0.338 Sum_probs=75.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcc---CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEE
Q 020783 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (321)
Q Consensus 3 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~---~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~ 79 (321)
..+.++|||+|||+++|+++|+++|++||+|..|.|+. ++.++|||||+|.+.++|++|+.. |+..|+|+.|.|.+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKP 91 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence 46789999999999999999999999999999999954 567899999999999999999998 99999999999999
Q ss_pred ccCCCC
Q 020783 80 AHGGRR 85 (321)
Q Consensus 80 a~~~~~ 85 (321)
+.....
T Consensus 92 a~~~~~ 97 (105)
T 2dh8_A 92 CTPRGM 97 (105)
T ss_dssp SCCSSC
T ss_pred ccCCCC
Confidence 986654
No 123
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.76 E-value=1.5e-18 Score=140.78 Aligned_cols=78 Identities=17% Similarity=0.252 Sum_probs=72.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccC--CeeEEEEc---cCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEE
Q 020783 5 SSRTLYVGNLPGDTRMREVEDLFYKYG--PIVDIDLK---IPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (321)
Q Consensus 5 ~~~~l~V~nLp~~~te~~L~~~F~~~G--~I~~v~l~---~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~ 79 (321)
+.++|||+|||+++|+++|+++|++|| .|..|.|. .++.++|||||+|.+.++|++|+..|||..|+|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 468999999999999999999999999 99999994 4688999999999999999999999999999999999999
Q ss_pred ccC
Q 020783 80 AHG 82 (321)
Q Consensus 80 a~~ 82 (321)
+..
T Consensus 134 a~~ 136 (156)
T 3n9u_C 134 ATR 136 (156)
T ss_dssp CCH
T ss_pred cCC
Confidence 874
No 124
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.76 E-value=1.6e-18 Score=131.93 Aligned_cols=77 Identities=29% Similarity=0.510 Sum_probs=73.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEccCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEccC
Q 020783 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (321)
Q Consensus 3 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a~~ 82 (321)
..++++|||+|||+++|+++|+++|++||.|..|.+. +|||||+|.+.++|++|+..|||..++|+.|.|.++..
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~-----kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 102 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL-----NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKL 102 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE-----TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE-----CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 4578999999999999999999999999999999998 89999999999999999999999999999999999886
Q ss_pred CC
Q 020783 83 GR 84 (321)
Q Consensus 83 ~~ 84 (321)
..
T Consensus 103 ~~ 104 (108)
T 2jvo_A 103 PA 104 (108)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 125
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.76 E-value=5.2e-18 Score=159.54 Aligned_cols=164 Identities=16% Similarity=0.165 Sum_probs=105.3
Q ss_pred CCCCCCCHHHHHHHHhccCCeeEEEE----ccC-CCCCcEE-----EEEEcCHHHHHHHHHhcCCcccCCceEEEEEccC
Q 020783 13 NLPGDTRMREVEDLFYKYGPIVDIDL----KIP-PRPPGYA-----FLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (321)
Q Consensus 13 nLp~~~te~~L~~~F~~~G~I~~v~l----~~~-~~~kg~a-----FVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a~~ 82 (321)
.||++ |..||.++|+|..|.. +.. ....+|+ |++|.+..+|..++..++.....++.........
T Consensus 4 ~lPp~-----L~~lF~p~pPl~~~~P~~~~p~~~~~~~~~~gia~~~~~f~~~~~~~~~~~~e~~~~~~~~~~~~k~~~~ 78 (437)
T 3pgw_S 4 FLPPN-----LLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRDAPPPTRAETREERMERKRREKIERR 78 (437)
T ss_pred cCCcc-----HHHhcCCCCCCcCCCCcccccccccCCCCcccHHHHHHhhcCcccccccccccCHHHHHHHHHHHHHHHH
Confidence 35665 7899999999988733 211 1234444 8888887766665554444332221100000000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCC----CcEEEEEeCCHH
Q 020783 83 GRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYD 158 (321)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~----~g~afV~f~~~~ 158 (321)
...... ................+..+|||+|||..+++++|.++|.+||.|..|.|+.+.. .|||||+|.+.+
T Consensus 79 ~~~~~~---~~~~~~p~~~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e 155 (437)
T 3pgw_S 79 QQEVET---ELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHER 155 (437)
T ss_pred HHHHHH---hhhhcCCcccccccCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHH
Confidence 000000 0000000001111223457999999999999999999999999999999987743 469999999999
Q ss_pred HHHHHHHHhCCCcccCccceeEEEEEecCC
Q 020783 159 DMKYAIRKLDRSEFRNAFSRSYVRVREYDS 188 (321)
Q Consensus 159 ~a~~A~~~l~g~~~~g~~~~~~i~v~~~~~ 188 (321)
+|+.|+..|||..|.| ..|.|.....
T Consensus 156 ~A~~Ai~~lng~~i~g----r~i~V~~a~~ 181 (437)
T 3pgw_S 156 DMHSAYKHADGKKIDG----RRVLVDVERG 181 (437)
T ss_pred HHHHHHHHcCCCEECC----EEEEEEEeCC
Confidence 9999999999999999 7787776654
No 126
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=1.4e-18 Score=132.89 Aligned_cols=78 Identities=27% Similarity=0.303 Sum_probs=72.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEccCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEccCC
Q 020783 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (321)
Q Consensus 4 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a~~~ 83 (321)
++.++|||+|||+++|+++|+++|++||.|..|.|.. +++||||+|.+.++|++|+..|||..|.|+.|.|+|+...
T Consensus 8 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~---~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 84 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE---GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIG 84 (111)
T ss_dssp EEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS---SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC---CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 4568999999999999999999999999999999873 5899999999999999999999999999999999999864
Q ss_pred C
Q 020783 84 R 84 (321)
Q Consensus 84 ~ 84 (321)
.
T Consensus 85 ~ 85 (111)
T 1whx_A 85 V 85 (111)
T ss_dssp T
T ss_pred c
Confidence 4
No 127
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.76 E-value=3.1e-18 Score=139.07 Aligned_cols=82 Identities=33% Similarity=0.474 Sum_probs=76.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcc---CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEc
Q 020783 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (321)
Q Consensus 4 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~---~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a 80 (321)
.+.++|||+|||+++|+++|+++|++||+|..|.|+. ++.++|||||+|.+.++|++|+..|||..|+|+.|.|.++
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 4679999999999999999999999999999999954 4678999999999999999999999999999999999999
Q ss_pred cCCCC
Q 020783 81 HGGRR 85 (321)
Q Consensus 81 ~~~~~ 85 (321)
.....
T Consensus 117 ~~~~~ 121 (156)
T 1h2v_Z 117 AGFKE 121 (156)
T ss_dssp SCCCT
T ss_pred CCCCC
Confidence 86553
No 128
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.76 E-value=4.5e-19 Score=131.65 Aligned_cols=79 Identities=20% Similarity=0.285 Sum_probs=70.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEc---cCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEc
Q 020783 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLK---IPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (321)
Q Consensus 4 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~---~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a 80 (321)
.+.++|||+|||+++|+++|+++|++||.|..+.++ .++.++|||||+|.+.++|++|++.|||..|.|+.|.|+++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 356899999999999999999999999999876663 46778999999999999999999999999999999999987
Q ss_pred cC
Q 020783 81 HG 82 (321)
Q Consensus 81 ~~ 82 (321)
..
T Consensus 93 ~s 94 (95)
T 2ek1_A 93 SS 94 (95)
T ss_dssp C-
T ss_pred cC
Confidence 63
No 129
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.76 E-value=8.4e-19 Score=130.43 Aligned_cols=80 Identities=24% Similarity=0.340 Sum_probs=74.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEccCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEccC
Q 020783 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (321)
Q Consensus 3 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a~~ 82 (321)
..+.++|||+|||+++|+++|+++|++||.|..+ ..++.++|||||+|.+.++|++|+..|||..|+|+.|.|.++..
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~--~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 90 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV--SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGE 90 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE--EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe--CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCC
Confidence 3567999999999999999999999999999887 56788899999999999999999999999999999999999876
Q ss_pred CC
Q 020783 83 GR 84 (321)
Q Consensus 83 ~~ 84 (321)
..
T Consensus 91 ~~ 92 (96)
T 1fjc_A 91 KG 92 (96)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 130
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.76 E-value=1.3e-18 Score=130.71 Aligned_cols=76 Identities=24% Similarity=0.428 Sum_probs=71.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEccCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEccC
Q 020783 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (321)
Q Consensus 4 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a~~ 82 (321)
.+.++|||+|||+++|+++|+++|++||.|..|.+. .++|||||+|.+.++|++|+..|||..++|+.|.|.+++.
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~---~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 100 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY---PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKE 100 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE---TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe---cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccC
Confidence 346899999999999999999999999999999997 4589999999999999999999999999999999999874
No 131
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.1e-18 Score=127.49 Aligned_cols=80 Identities=25% Similarity=0.376 Sum_probs=72.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhccCC-eeEEEEccCCCCCcEEEEEEcCHHHHHHHHHhcCC-cccCCceEEEEE
Q 020783 2 SSRSSRTLYVGNLPGDTRMREVEDLFYKYGP-IVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDG-YNFDGYRLRVEL 79 (321)
Q Consensus 2 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~-I~~v~l~~~~~~kg~aFVeF~~~e~A~~A~~~l~g-~~i~g~~i~V~~ 79 (321)
...+.++|||+|||+++|+++|+++|++||. |..+.+. ++|||||+|.+.++|++|++.||| ..++|+.|.|.+
T Consensus 4 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 79 (93)
T 2cqh_A 4 GSSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL----KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDY 79 (93)
T ss_dssp CCCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE----ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc----CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEE
Confidence 3567899999999999999999999999999 7777664 489999999999999999999999 999999999999
Q ss_pred ccCCCC
Q 020783 80 AHGGRR 85 (321)
Q Consensus 80 a~~~~~ 85 (321)
+.....
T Consensus 80 a~~~~~ 85 (93)
T 2cqh_A 80 SVSKKL 85 (93)
T ss_dssp CCCCCC
T ss_pred ccCccc
Confidence 987543
No 132
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.76 E-value=1.1e-18 Score=130.98 Aligned_cols=78 Identities=27% Similarity=0.491 Sum_probs=70.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcc----CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEE
Q 020783 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI----PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (321)
Q Consensus 4 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~----~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~ 79 (321)
.+.++|||+|||+++|+++|+++|++|| |..|.|.. ++.++|||||+|.+.++|++|+ .|||..|+|+.|.|.+
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~~ 94 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDV 94 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEEe
Confidence 5679999999999999999999999999 99999953 5788999999999999999999 7999999999999999
Q ss_pred ccCC
Q 020783 80 AHGG 83 (321)
Q Consensus 80 a~~~ 83 (321)
+...
T Consensus 95 a~~~ 98 (100)
T 2j76_E 95 ADQA 98 (100)
T ss_dssp CCCS
T ss_pred ccCC
Confidence 8764
No 133
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.75 E-value=8.7e-19 Score=138.13 Aligned_cols=82 Identities=20% Similarity=0.380 Sum_probs=75.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeE--EEEcc---CCCCCcEEEEEEcCHHHHHHHHHhcCCc----ccCCc
Q 020783 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVD--IDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGY----NFDGY 73 (321)
Q Consensus 3 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~--v~l~~---~~~~kg~aFVeF~~~e~A~~A~~~l~g~----~i~g~ 73 (321)
..+.++|||+|||+++|+++|+++|++||.|.. |.|+. ++.++|||||+|.+. +|.+|+..|||. .|+|+
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK 98 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE
Confidence 457899999999999999999999999999966 88843 678999999999999 999999999999 99999
Q ss_pred eEEEEEccCCCC
Q 020783 74 RLRVELAHGGRR 85 (321)
Q Consensus 74 ~i~V~~a~~~~~ 85 (321)
.|.|.++.+...
T Consensus 99 ~l~V~~a~~~~~ 110 (131)
T 2m2b_A 99 TINVEFAKGSKR 110 (131)
T ss_dssp CCCCEECCCSCC
T ss_pred EEEEEECCCCCC
Confidence 999999987653
No 134
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=4.8e-18 Score=125.04 Aligned_cols=80 Identities=16% Similarity=0.281 Sum_probs=73.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcc--CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEc
Q 020783 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (321)
Q Consensus 3 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~--~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a 80 (321)
..+.++|||+|||+++|+++|+++|++| .|..|.|+. ++.++|||||+|.+.++|++|+. |||..|+|+.|.|.++
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a 84 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFRE 84 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEEC
Confidence 4567999999999999999999999999 999999964 57789999999999999999999 9999999999999998
Q ss_pred cCCC
Q 020783 81 HGGR 84 (321)
Q Consensus 81 ~~~~ 84 (321)
....
T Consensus 85 ~~~~ 88 (91)
T 2dgw_A 85 KSGP 88 (91)
T ss_dssp SSCC
T ss_pred CcCC
Confidence 8653
No 135
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.75 E-value=5.3e-18 Score=137.87 Aligned_cols=82 Identities=38% Similarity=0.568 Sum_probs=76.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcc---CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEc
Q 020783 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (321)
Q Consensus 4 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~---~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a 80 (321)
.+.++|||+|||+++|+++|+++|++||.|..|.|.. ++.++|||||+|.+.++|++|+..|||..|.|+.|.|.++
T Consensus 68 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 147 (158)
T 2kn4_A 68 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 147 (158)
T ss_dssp CBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 3478999999999999999999999999999999954 6789999999999999999999999999999999999999
Q ss_pred cCCCC
Q 020783 81 HGGRR 85 (321)
Q Consensus 81 ~~~~~ 85 (321)
.....
T Consensus 148 ~~~~~ 152 (158)
T 2kn4_A 148 RYGRP 152 (158)
T ss_dssp CCSSC
T ss_pred CCCCC
Confidence 87654
No 136
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.75 E-value=3.2e-18 Score=130.64 Aligned_cols=76 Identities=28% Similarity=0.576 Sum_probs=71.1
Q ss_pred CCCeEEEcCCCCC-CCHHHHHHHHhccCCeeEEEEccCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEccCC
Q 020783 5 SSRTLYVGNLPGD-TRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (321)
Q Consensus 5 ~~~~l~V~nLp~~-~te~~L~~~F~~~G~I~~v~l~~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a~~~ 83 (321)
++++|||+|||++ +|+++|+++|++||.|..|.+ ++|||||+|.+.++|++|+..|||..|+|+.|.|.++...
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i-----~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 100 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV-----HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGEP 100 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE-----ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCCC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE-----eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCC
Confidence 4589999999999 999999999999999999999 3899999999999999999999999999999999999865
Q ss_pred CC
Q 020783 84 RR 85 (321)
Q Consensus 84 ~~ 85 (321)
..
T Consensus 101 ~~ 102 (110)
T 1wf1_A 101 KP 102 (110)
T ss_dssp CS
T ss_pred CC
Confidence 43
No 137
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.75 E-value=5.7e-19 Score=129.74 Aligned_cols=78 Identities=29% Similarity=0.583 Sum_probs=69.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcc---CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEccCC
Q 020783 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (321)
Q Consensus 7 ~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~---~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a~~~ 83 (321)
++|||+|||+++|+++|+++|++||+|..|.+.. ++.++|||||+|.+.+ |++|+..|||..++|+.|.|.+|...
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 5899999999999999999999999999999954 4788999999999999 99999999999999999999999876
Q ss_pred CC
Q 020783 84 RR 85 (321)
Q Consensus 84 ~~ 85 (321)
..
T Consensus 81 ~~ 82 (90)
T 2ki2_A 81 KS 82 (90)
T ss_dssp --
T ss_pred CC
Confidence 53
No 138
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=2.3e-18 Score=132.31 Aligned_cols=79 Identities=27% Similarity=0.464 Sum_probs=72.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcc---CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEcc
Q 020783 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (321)
Q Consensus 5 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~---~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a~ 81 (321)
+.++|||+|||+++|+++|+++|++||.|..|.|.. ++.++|||||+|.+.++|++|+ .|||..|.|+.|.|.++.
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 102 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQ 102 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecC
Confidence 357999999999999999999999999999999964 4778999999999999999999 899999999999999987
Q ss_pred CCC
Q 020783 82 GGR 84 (321)
Q Consensus 82 ~~~ 84 (321)
...
T Consensus 103 ~~~ 105 (114)
T 2cq4_A 103 AEK 105 (114)
T ss_dssp HHH
T ss_pred CCc
Confidence 543
No 139
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=1.1e-18 Score=124.15 Aligned_cols=73 Identities=16% Similarity=0.373 Sum_probs=68.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcc---CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEc
Q 020783 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (321)
Q Consensus 7 ~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~---~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a 80 (321)
++|||+|||+++|+++|+++|++||+|..+.++. ++.++|||||+|.+.++|++|+..++ ..++|+.|.|.+|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 5799999999999999999999999999999954 57889999999999999999999999 9999999999986
No 140
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.75 E-value=4.4e-18 Score=132.66 Aligned_cols=79 Identities=27% Similarity=0.495 Sum_probs=73.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEc---cCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEcc
Q 020783 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLK---IPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (321)
Q Consensus 5 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~---~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a~ 81 (321)
+.++|||+|||+++|+++|+++|++||.|..|.+. .++.++|||||+|.+.++|++|+ .|||..|+|+.|.|.++.
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 35899999999999999999999999999999995 46888999999999999999999 799999999999999988
Q ss_pred CCC
Q 020783 82 GGR 84 (321)
Q Consensus 82 ~~~ 84 (321)
...
T Consensus 114 ~~~ 116 (124)
T 2jwn_A 114 TNM 116 (124)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 141
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.75 E-value=1.7e-18 Score=137.16 Aligned_cols=82 Identities=38% Similarity=0.568 Sum_probs=76.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcc---CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEc
Q 020783 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (321)
Q Consensus 4 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~---~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a 80 (321)
.+.++|||+|||+++|+++|+++|++||.|..|.|+. ++.++|||||+|.+.++|++|+..|||..|.|+.|.|.++
T Consensus 45 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a 124 (135)
T 2lea_A 45 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 124 (135)
T ss_dssp GGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 3568999999999999999999999999999999954 5788999999999999999999999999999999999999
Q ss_pred cCCCC
Q 020783 81 HGGRR 85 (321)
Q Consensus 81 ~~~~~ 85 (321)
+....
T Consensus 125 ~~~~~ 129 (135)
T 2lea_A 125 RYGRP 129 (135)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87654
No 142
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=8.7e-18 Score=126.59 Aligned_cols=81 Identities=19% Similarity=0.400 Sum_probs=73.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcc---CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEE
Q 020783 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (321)
Q Consensus 3 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~---~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~ 79 (321)
..+.++|||+|||+++|+++|+++|++||.|..|.|+. ++.++|||||+|.+.++|++|+. ++..|+|+.|.|.+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~ 89 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKL 89 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEEC
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEe
Confidence 46789999999999999999999999999999999954 57889999999999999999999 47899999999999
Q ss_pred ccCCCC
Q 020783 80 AHGGRR 85 (321)
Q Consensus 80 a~~~~~ 85 (321)
+.....
T Consensus 90 a~~~~~ 95 (103)
T 2cqg_A 90 PNSKQS 95 (103)
T ss_dssp CCTTCC
T ss_pred cCCCCc
Confidence 987654
No 143
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.75 E-value=2e-18 Score=126.34 Aligned_cols=79 Identities=30% Similarity=0.402 Sum_probs=73.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEccCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEcc
Q 020783 2 SSRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (321)
Q Consensus 2 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a~ 81 (321)
++++.++|||+|||+++|+++|+++|++| .|..+.+. .++|||||+|.+.++|++|++.|||..++|+.|.|.++.
T Consensus 1 Gs~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~---~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 1 GSSGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD---RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp CCCCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE---GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe---CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcC
Confidence 35788999999999999999999999999 99999985 569999999999999999999999999999999999987
Q ss_pred CCC
Q 020783 82 GGR 84 (321)
Q Consensus 82 ~~~ 84 (321)
...
T Consensus 77 ~~~ 79 (88)
T 1wg1_A 77 TDA 79 (88)
T ss_dssp CCC
T ss_pred CCc
Confidence 543
No 144
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.75 E-value=4.8e-18 Score=135.19 Aligned_cols=78 Identities=33% Similarity=0.569 Sum_probs=72.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcc---CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEE
Q 020783 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (321)
Q Consensus 3 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~---~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~ 79 (321)
..+.++|||+|||+++|+++|+++|++||+|..|.+.. ++.++|||||+|.+.++|++|++.|||..|+|+.|.|.+
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 139 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 139 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 35789999999999999999999999999999999954 578899999999999999999999999999999999987
Q ss_pred c
Q 020783 80 A 80 (321)
Q Consensus 80 a 80 (321)
|
T Consensus 140 A 140 (140)
T 2ku7_A 140 A 140 (140)
T ss_dssp -
T ss_pred C
Confidence 5
No 145
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.75 E-value=1.8e-18 Score=138.44 Aligned_cols=82 Identities=24% Similarity=0.419 Sum_probs=75.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeE--------EEEccCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCce
Q 020783 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVD--------IDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYR 74 (321)
Q Consensus 3 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~--------v~l~~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~ 74 (321)
..++++|||+|||+++|+++|+++|++||.|.. +.+..++.++|||||+|.+.++|.+|+..|||..|.|+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 467899999999999999999999999999876 555668899999999999999999999999999999999
Q ss_pred EEEEEccCCC
Q 020783 75 LRVELAHGGR 84 (321)
Q Consensus 75 i~V~~a~~~~ 84 (321)
|.|.++....
T Consensus 122 l~V~~a~~~~ 131 (143)
T 3egn_A 122 MVVQFARSAR 131 (143)
T ss_dssp CEEEECCCSC
T ss_pred EEEEECCCCC
Confidence 9999998654
No 146
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=7.2e-18 Score=129.90 Aligned_cols=80 Identities=19% Similarity=0.382 Sum_probs=73.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcc---CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEcc
Q 020783 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (321)
Q Consensus 5 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~---~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a~ 81 (321)
+.++|||+|||+++|+++|+++|++||.|..|.|+. ++.++|||||+|.+.++|++|+.. |+..|+|+.|.|.++.
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAV 104 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECC
Confidence 348999999999999999999999999999999954 478899999999999999999996 9999999999999998
Q ss_pred CCCC
Q 020783 82 GGRR 85 (321)
Q Consensus 82 ~~~~ 85 (321)
....
T Consensus 105 ~~~~ 108 (116)
T 1x4b_A 105 AREE 108 (116)
T ss_dssp SCCC
T ss_pred CCcc
Confidence 7654
No 147
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=2.7e-18 Score=129.14 Aligned_cols=82 Identities=22% Similarity=0.321 Sum_probs=73.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEccCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEccC
Q 020783 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (321)
Q Consensus 3 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a~~ 82 (321)
..+.++|||+|||+++|+++|+++|+.|+.|.-+.-..++.++|||||+|.+.++|++|+..|||..|.|+.|.|.+++.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 91 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKP 91 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCCeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecC
Confidence 35789999999999999999999999997655544456788899999999999999999999999999999999999986
Q ss_pred CC
Q 020783 83 GR 84 (321)
Q Consensus 83 ~~ 84 (321)
..
T Consensus 92 ~~ 93 (102)
T 2fc8_A 92 KG 93 (102)
T ss_dssp CC
T ss_pred CC
Confidence 55
No 148
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.74 E-value=3.9e-18 Score=139.76 Aligned_cols=83 Identities=24% Similarity=0.392 Sum_probs=75.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEc---cCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEE
Q 020783 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLK---IPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (321)
Q Consensus 3 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~---~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~ 79 (321)
..++++|||+|||+++|+++|.++|++||.|..|.|+ .++.++|||||+|.+.++|++|+..|||..|.|+.|.|.+
T Consensus 69 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 148 (165)
T 1rk8_A 69 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 148 (165)
T ss_dssp CC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3466789999999999999999999999999999995 3677899999999999999999999999999999999999
Q ss_pred ccCCCC
Q 020783 80 AHGGRR 85 (321)
Q Consensus 80 a~~~~~ 85 (321)
+.....
T Consensus 149 a~~~~~ 154 (165)
T 1rk8_A 149 CFVKGP 154 (165)
T ss_dssp SEECC-
T ss_pred ecCCCC
Confidence 986553
No 149
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=5.9e-18 Score=127.86 Aligned_cols=80 Identities=16% Similarity=0.228 Sum_probs=72.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCeeE-EEEcc--CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEc
Q 020783 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVD-IDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (321)
Q Consensus 4 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~-v~l~~--~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a 80 (321)
.+.++|||+|||+++|+++|+++|++||.|.. |.|.. +++++|||||+|.+.++|++|+.. |+..++|+.|.|.++
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~~ 91 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFKS 91 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEEC
Confidence 46799999999999999999999999999987 77743 678899999999999999999996 999999999999998
Q ss_pred cCCC
Q 020783 81 HGGR 84 (321)
Q Consensus 81 ~~~~ 84 (321)
....
T Consensus 92 ~~~~ 95 (104)
T 1wg5_A 92 SRAE 95 (104)
T ss_dssp CTTT
T ss_pred CHHH
Confidence 7543
No 150
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=7.7e-18 Score=129.29 Aligned_cols=80 Identities=19% Similarity=0.322 Sum_probs=73.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcc--CCCCCcEEEEEEcCHHHHHHHHHhcCCccc--------CCc
Q 020783 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNF--------DGY 73 (321)
Q Consensus 4 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~--~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i--------~g~ 73 (321)
.+.++|||+|||+++|+++|+++|++||.|..|.|.. ++.++|||||+|.+.++|++|+..|||..| .++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~ 102 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTE 102 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCC
Confidence 5679999999999999999999999999999999954 577899999999999999999999999999 578
Q ss_pred eEEEEEccCC
Q 020783 74 RLRVELAHGG 83 (321)
Q Consensus 74 ~i~V~~a~~~ 83 (321)
+|.|.|+.+.
T Consensus 103 ~l~v~~a~p~ 112 (114)
T 1x5o_A 103 PLLCKFSGPS 112 (114)
T ss_dssp CBEEEECCCS
T ss_pred ceeEEccCCC
Confidence 8999998743
No 151
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=4.4e-18 Score=130.77 Aligned_cols=81 Identities=14% Similarity=0.121 Sum_probs=73.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCe-eEEEEcc--CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEE
Q 020783 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPI-VDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (321)
Q Consensus 3 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I-~~v~l~~--~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~ 79 (321)
..+.++|||+|||+++|+++|+++|++||.| ..|.|+. ++.++|||||+|.+.++|++|+.. ||..|+|+.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~ 90 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHV 90 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEE
Confidence 3567999999999999999999999999999 7888843 678899999999999999999996 99999999999999
Q ss_pred ccCCC
Q 020783 80 AHGGR 84 (321)
Q Consensus 80 a~~~~ 84 (321)
+....
T Consensus 91 a~~~~ 95 (114)
T 2cpy_A 91 VTLED 95 (114)
T ss_dssp ECHHH
T ss_pred CCHHH
Confidence 87543
No 152
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.73 E-value=1e-18 Score=131.32 Aligned_cols=80 Identities=19% Similarity=0.331 Sum_probs=71.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEE--ccCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEcc
Q 020783 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDL--KIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (321)
Q Consensus 4 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l--~~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a~ 81 (321)
.+.++|||+|||+++|+++|+++|++||.|..+.+ ..++.++|||||+|.+.++|++|++ |||..|.|+.|.|.++.
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~ 93 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPK 93 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEcC
Confidence 46789999999999999999999999998887222 2357889999999999999999999 99999999999999998
Q ss_pred CCC
Q 020783 82 GGR 84 (321)
Q Consensus 82 ~~~ 84 (321)
...
T Consensus 94 ~~~ 96 (101)
T 1fj7_A 94 GRD 96 (101)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 153
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2.2e-17 Score=122.96 Aligned_cols=77 Identities=26% Similarity=0.468 Sum_probs=71.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEccCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEccCC
Q 020783 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (321)
Q Consensus 4 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a~~~ 83 (321)
.+.++|||+|| ++|+++|+++|++||+|..|.|. .++|||||+|.+.++|++|+..|||..|.|+.|.|.++...
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~---~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~ 87 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD---PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQ 87 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE---TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec---CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCC
Confidence 46789999996 99999999999999999999995 56899999999999999999999999999999999999876
Q ss_pred CC
Q 020783 84 RR 85 (321)
Q Consensus 84 ~~ 85 (321)
..
T Consensus 88 ~~ 89 (97)
T 1x5p_A 88 PM 89 (97)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 154
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.73 E-value=2.8e-18 Score=121.54 Aligned_cols=72 Identities=19% Similarity=0.461 Sum_probs=67.2
Q ss_pred eEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcc---CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEc
Q 020783 8 TLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (321)
Q Consensus 8 ~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~---~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a 80 (321)
+|||+|||+++|+++|+++|++||+|..|.++. ++.++|||||+|.+.++|++|+. +++..+.|+.|.|.+|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 699999999999999999999999999999954 47889999999999999999999 5999999999999875
No 155
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.73 E-value=7.6e-18 Score=135.82 Aligned_cols=79 Identities=44% Similarity=0.737 Sum_probs=73.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEccCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEccCC
Q 020783 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (321)
Q Consensus 4 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a~~~ 83 (321)
.+.++|||+|||+++|+++|+++|++||.|..|.+..+ ++|||||+|.+.++|++|+..|||..|.|+.|.|.++.+.
T Consensus 71 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 71 PLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN--PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGE 148 (150)
T ss_dssp TTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS--SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC--CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCC
Confidence 46799999999999999999999999999999999765 6899999999999999999999999999999999998865
Q ss_pred C
Q 020783 84 R 84 (321)
Q Consensus 84 ~ 84 (321)
+
T Consensus 149 ~ 149 (150)
T 2i2y_A 149 K 149 (150)
T ss_dssp C
T ss_pred C
Confidence 3
No 156
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=7.1e-18 Score=126.92 Aligned_cols=80 Identities=21% Similarity=0.309 Sum_probs=71.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcc--CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEc
Q 020783 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (321)
Q Consensus 3 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~--~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a 80 (321)
..+.++|||+|||+++|+++|+++|++||.| .|.|+. +++++|||||+|.+.++|++|++ +|+..|+|+.|.|.++
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~~ 89 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFLN 89 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 3567899999999999999999999999954 888843 67889999999999999999996 8999999999999998
Q ss_pred cCCC
Q 020783 81 HGGR 84 (321)
Q Consensus 81 ~~~~ 84 (321)
....
T Consensus 90 ~~~~ 93 (102)
T 1wez_A 90 STAG 93 (102)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7654
No 157
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.73 E-value=5.7e-18 Score=130.35 Aligned_cols=80 Identities=55% Similarity=1.010 Sum_probs=67.1
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCCCcEEEEEeCCHHHHHHHHHHhCCCcccCcc-ceeEEEEE
Q 020783 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAF-SRSYVRVR 184 (321)
Q Consensus 106 ~~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~-~~~~i~v~ 184 (321)
....++|||+|||.++++++|+++|.+||+|..+.|..+ +||||+|.+.++|++|++.||+..+.|+. ...+|++.
T Consensus 13 ~r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~ 89 (115)
T 3beg_B 13 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD---GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 89 (115)
T ss_dssp ----CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT---SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC---CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEec
Confidence 456789999999999999999999999999999999876 79999999999999999999999999954 23346776
Q ss_pred ecCC
Q 020783 185 EYDS 188 (321)
Q Consensus 185 ~~~~ 188 (321)
....
T Consensus 90 ~~~~ 93 (115)
T 3beg_B 90 VDGP 93 (115)
T ss_dssp ECC-
T ss_pred cCCC
Confidence 6544
No 158
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=1.7e-17 Score=122.90 Aligned_cols=79 Identities=20% Similarity=0.430 Sum_probs=68.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEccCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEccC
Q 020783 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (321)
Q Consensus 3 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a~~ 82 (321)
.+..++|||+|||+++|+++|+++|++||.|..|.+.. ...+ ||||+|.+.++|++|+. |||..|+|+.|.|.++..
T Consensus 5 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~-~~g~-~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~ 81 (94)
T 2e5g_A 5 SSGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASVVMDK-DKGV-FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQ 81 (94)
T ss_dssp CTTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEEEECS-SSCC-EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCC
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEcC-CCCc-EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCc
Confidence 35678999999999999999999999999999983321 1122 99999999999999999 999999999999998875
Q ss_pred CC
Q 020783 83 GR 84 (321)
Q Consensus 83 ~~ 84 (321)
..
T Consensus 82 ~~ 83 (94)
T 2e5g_A 82 KE 83 (94)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 159
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.73 E-value=7.6e-18 Score=129.61 Aligned_cols=77 Identities=23% Similarity=0.332 Sum_probs=67.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEccCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCce-----EEEE
Q 020783 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYR-----LRVE 78 (321)
Q Consensus 4 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~-----i~V~ 78 (321)
+..++|||+|||+++|+++|+++|++||+|..|.|..+ |||||+|.+.++|++|++.|||..|+|+. |.|.
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~----g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~ 89 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 89 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT----SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC----CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEec
Confidence 45789999999999999999999999999999999754 99999999999999999999999999998 7777
Q ss_pred EccCCC
Q 020783 79 LAHGGR 84 (321)
Q Consensus 79 ~a~~~~ 84 (321)
.+....
T Consensus 90 ~~~~~~ 95 (115)
T 3beg_B 90 VDGPRS 95 (115)
T ss_dssp ECC---
T ss_pred cCCCCC
Confidence 766543
No 160
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.73 E-value=5.1e-18 Score=131.22 Aligned_cols=79 Identities=18% Similarity=0.275 Sum_probs=72.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCC---eeEEEEcc--CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEE
Q 020783 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGP---IVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVE 78 (321)
Q Consensus 4 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~---I~~v~l~~--~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~ 78 (321)
.+.++|||+|||+++|+++|+++|++||. |..|.|.. +++++|||||+|.+.++|++|++ |||..|+|+.|.|.
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 93 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEVF 93 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEE
Confidence 45789999999999999999999999999 88998853 47889999999999999999999 99999999999999
Q ss_pred EccCC
Q 020783 79 LAHGG 83 (321)
Q Consensus 79 ~a~~~ 83 (321)
++...
T Consensus 94 ~a~~~ 98 (118)
T 2db1_A 94 KSHRT 98 (118)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 98643
No 161
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=1.5e-17 Score=120.52 Aligned_cols=76 Identities=28% Similarity=0.360 Sum_probs=68.4
Q ss_pred CCCCCe-EEEcCCCCCCCHHH----HHHHHhcc-CCeeEEEEccCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEE
Q 020783 3 SRSSRT-LYVGNLPGDTRMRE----VEDLFYKY-GPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLR 76 (321)
Q Consensus 3 ~~~~~~-l~V~nLp~~~te~~----L~~~F~~~-G~I~~v~l~~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~ 76 (321)
..|+.| |||+|||..+++++ |.++|++| |+|.+| ++ |+|||+|.+.++|++|++.|||..+.|++|+
T Consensus 5 ~~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V----tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~ 77 (96)
T 2diu_A 5 SSGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI----TG---CSAILRFINQDSAERAQKRMENEDVFGNRII 77 (96)
T ss_dssp CCCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC----CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCE
T ss_pred CCCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE----ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEE
Confidence 356777 99999999999998 56899999 599998 33 9999999999999999999999999999999
Q ss_pred EEEccCCCC
Q 020783 77 VELAHGGRR 85 (321)
Q Consensus 77 V~~a~~~~~ 85 (321)
|.+|+....
T Consensus 78 v~~A~~~sd 86 (96)
T 2diu_A 78 VSFTPKNRE 86 (96)
T ss_dssp EESSCCSCC
T ss_pred EEecCCCcc
Confidence 999997653
No 162
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=1.9e-17 Score=123.07 Aligned_cols=79 Identities=15% Similarity=0.372 Sum_probs=70.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEE-EccCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEccC
Q 020783 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDID-LKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (321)
Q Consensus 4 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~-l~~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a~~ 82 (321)
..+++|||+|||+++|+++|+++|++||.|..|. ++.+. ..+.|||+|.+.++|++|+..|||..|+|+.|.|.++.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~-~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 91 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDS-ETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPD 91 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSS-SSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCC
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCC-CCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCc
Confidence 3578999999999999999999999999999995 65433 245599999999999999999999999999999999986
Q ss_pred C
Q 020783 83 G 83 (321)
Q Consensus 83 ~ 83 (321)
.
T Consensus 92 ~ 92 (96)
T 2e44_A 92 E 92 (96)
T ss_dssp C
T ss_pred c
Confidence 5
No 163
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.72 E-value=1.8e-17 Score=137.24 Aligned_cols=81 Identities=23% Similarity=0.368 Sum_probs=75.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcc--CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEcc
Q 020783 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (321)
Q Consensus 4 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~--~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a~ 81 (321)
.++++|||+|||+++|+++|+++|++||.|..|.|.. ++.++|||||+|.+.++|++|++.|||..|+|+.|.|.++.
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~ 165 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 165 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence 4578999999999999999999999999999999954 57889999999999999999999999999999999999998
Q ss_pred CCC
Q 020783 82 GGR 84 (321)
Q Consensus 82 ~~~ 84 (321)
...
T Consensus 166 ~~~ 168 (177)
T 2f3j_A 166 SQI 168 (177)
T ss_dssp SGG
T ss_pred CCC
Confidence 654
No 164
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.72 E-value=8.6e-18 Score=132.81 Aligned_cols=78 Identities=17% Similarity=0.242 Sum_probs=71.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCC---eeEEEEcc--CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEE
Q 020783 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGP---IVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVE 78 (321)
Q Consensus 4 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~---I~~v~l~~--~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~ 78 (321)
.+.++|||+|||+++|+++|+++|++||. |..|.|.. .++++|||||+|.+.++|++|++ |||..|+|+.|.|.
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~ 120 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEVF 120 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEE
Confidence 45789999999999999999999999999 88888853 47889999999999999999999 99999999999999
Q ss_pred EccC
Q 020783 79 LAHG 82 (321)
Q Consensus 79 ~a~~ 82 (321)
++..
T Consensus 121 ~a~~ 124 (136)
T 2hgl_A 121 KSHR 124 (136)
T ss_dssp ECCH
T ss_pred ECCh
Confidence 9864
No 165
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=9.8e-18 Score=130.76 Aligned_cols=79 Identities=20% Similarity=0.271 Sum_probs=71.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEE-EE--ccCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEc
Q 020783 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDI-DL--KIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (321)
Q Consensus 4 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v-~l--~~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a 80 (321)
.+.++|||+|||+++|+++|+++|++||.|..+ .+ ..++.++|||||+|.+.++|++||. |||..|+|+.|.|.++
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 456899999999999999999999999998763 33 3578889999999999999999999 9999999999999998
Q ss_pred cCC
Q 020783 81 HGG 83 (321)
Q Consensus 81 ~~~ 83 (321)
...
T Consensus 102 ~~~ 104 (124)
T 1wel_A 102 TKK 104 (124)
T ss_dssp CHH
T ss_pred CHH
Confidence 753
No 166
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.71 E-value=1.2e-17 Score=144.04 Aligned_cols=79 Identities=16% Similarity=0.211 Sum_probs=72.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccC--CeeEEEEc---cCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEE
Q 020783 5 SSRTLYVGNLPGDTRMREVEDLFYKYG--PIVDIDLK---IPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (321)
Q Consensus 5 ~~~~l~V~nLp~~~te~~L~~~F~~~G--~I~~v~l~---~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~ 79 (321)
..++|||+|||+++|+++|+++|++|| .|..|.|+ .+++++|||||+|.+.++|++||+.|||..|.|+.|.|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567899999999999999999999999 99999995 3678899999999999999999999999999999999999
Q ss_pred ccCC
Q 020783 80 AHGG 83 (321)
Q Consensus 80 a~~~ 83 (321)
+...
T Consensus 147 a~~~ 150 (229)
T 3q2s_C 147 VNKQ 150 (229)
T ss_dssp CCHH
T ss_pred CCCC
Confidence 8753
No 167
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=1.9e-16 Score=120.35 Aligned_cols=83 Identities=54% Similarity=0.968 Sum_probs=73.0
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCCCcEEEEEeCCHHHHHHHHHHhCCCcccCcc-ceeEE
Q 020783 103 GVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAF-SRSYV 181 (321)
Q Consensus 103 ~~~~~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~-~~~~i 181 (321)
+++....++|||+|||.++++++|+++|.+||+|..+.+..+ +||||+|.+.++|++|++.||+..+.|+. ....|
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~---g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i 85 (108)
T 1x4c_A 9 PPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD---GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 85 (108)
T ss_dssp CCCCSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT---TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC---CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEE
Confidence 344566889999999999999999999999999999999887 79999999999999999999999998833 34678
Q ss_pred EEEecCC
Q 020783 182 RVREYDS 188 (321)
Q Consensus 182 ~v~~~~~ 188 (321)
.|.....
T Consensus 86 ~V~~a~~ 92 (108)
T 1x4c_A 86 RVKVDGP 92 (108)
T ss_dssp EEEESSC
T ss_pred EEEeCCC
Confidence 8887655
No 168
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.71 E-value=3.8e-17 Score=131.96 Aligned_cols=78 Identities=22% Similarity=0.249 Sum_probs=70.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEccCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCC--ceEEEEEccCCC
Q 020783 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDG--YRLRVELAHGGR 84 (321)
Q Consensus 7 ~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g--~~i~V~~a~~~~ 84 (321)
.+|||+||++.+|+++|+++|++||+|..|.|.. +.++|||||+|.+.++|++|++.|||..|.| +.|+|+|++...
T Consensus 47 l~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~-k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~~ 125 (164)
T 1sjr_A 47 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFT-KNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTS 125 (164)
T ss_dssp EEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEE-SSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSSS
T ss_pred EEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEe-CCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCCc
Confidence 5689999999999999999999999999999853 3457899999999999999999999999965 999999999765
Q ss_pred C
Q 020783 85 R 85 (321)
Q Consensus 85 ~ 85 (321)
.
T Consensus 126 l 126 (164)
T 1sjr_A 126 L 126 (164)
T ss_dssp C
T ss_pred c
Confidence 3
No 169
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.71 E-value=8.2e-18 Score=127.74 Aligned_cols=80 Identities=16% Similarity=0.192 Sum_probs=73.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCC---eeEEEEcc--CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEE
Q 020783 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGP---IVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRV 77 (321)
Q Consensus 3 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~---I~~v~l~~--~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V 77 (321)
..+.++|||+|||+++|+++|+++|+.||. |..|.|.. .+.++|||||+|.+.++|++|+. |||..++|+.|.|
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V 86 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEV 86 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEE
Confidence 457789999999999999999999999998 89999954 37889999999999999999999 9999999999999
Q ss_pred EEccCC
Q 020783 78 ELAHGG 83 (321)
Q Consensus 78 ~~a~~~ 83 (321)
.++...
T Consensus 87 ~~a~~~ 92 (107)
T 2lmi_A 87 YEINNE 92 (107)
T ss_dssp EECCHH
T ss_pred EECCHH
Confidence 998743
No 170
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.71 E-value=2.9e-17 Score=119.64 Aligned_cols=74 Identities=31% Similarity=0.587 Sum_probs=68.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcc----C-------CeeEEEEccCCCCCcEEEEEEcCHHHHHHHHHhcCCccc
Q 020783 2 SSRSSRTLYVGNLPGDTRMREVEDLFYKY----G-------PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNF 70 (321)
Q Consensus 2 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~----G-------~I~~v~l~~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i 70 (321)
.+++.++|||+|||+++|+++|+++|++| | .|.++.+..+ +|||||+|.+.++|++|+ .|||..+
T Consensus 2 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~---kg~afV~f~~~~~a~~A~-~l~g~~~ 77 (87)
T 2hzc_A 2 PLGSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD---KNFAFLEFRSVDETTQAM-AFDGIIF 77 (87)
T ss_dssp CSGGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS---SSEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC---CcEEEEEcCCHHHHHHHH-hcCCCEE
Confidence 35788999999999999999999999999 8 9999998743 899999999999999999 8999999
Q ss_pred CCceEEEEE
Q 020783 71 DGYRLRVEL 79 (321)
Q Consensus 71 ~g~~i~V~~ 79 (321)
.|+.|.|+.
T Consensus 78 ~g~~l~V~r 86 (87)
T 2hzc_A 78 QGQSLKIRR 86 (87)
T ss_dssp TTEECEEEC
T ss_pred CCeEEEEeC
Confidence 999999874
No 171
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=4.2e-17 Score=123.94 Aligned_cols=75 Identities=19% Similarity=0.210 Sum_probs=69.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcc--CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEccC
Q 020783 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (321)
Q Consensus 6 ~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~--~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a~~ 82 (321)
..+|||+|||+++|+++|+++|++| .|..|.|+. +++++|||||+|.+.++|++|+. ||+..|+|+.|.|..+..
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALK-RNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHHH-TTTEEETTEEEEEEECCH
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEEECCc
Confidence 4689999999999999999999999 899999954 47889999999999999999995 999999999999998864
No 172
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.71 E-value=4e-17 Score=127.08 Aligned_cols=77 Identities=22% Similarity=0.309 Sum_probs=69.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEccCCCCCcE-EEEEEcCHHHHHHHHHhcCCcccCC--ceEEEEEccCC
Q 020783 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGY-AFLEFEDYRDAEDAIRGRDGYNFDG--YRLRVELAHGG 83 (321)
Q Consensus 7 ~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~~~~~kg~-aFVeF~~~e~A~~A~~~l~g~~i~g--~~i~V~~a~~~ 83 (321)
-.|||+||++.+|+++|+++|++||+|..|.+.. +.+|| |||+|.+.++|++|++.|||..|.| +.|+|+|++..
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~--~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~ 106 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFT--KNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLT 106 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEE--ETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCS
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEc--CCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCC
Confidence 4567999999999999999999999999998864 23688 9999999999999999999999988 89999999876
Q ss_pred CC
Q 020783 84 RR 85 (321)
Q Consensus 84 ~~ 85 (321)
..
T Consensus 107 ~l 108 (130)
T 3zzy_A 107 SL 108 (130)
T ss_dssp SC
T ss_pred ce
Confidence 53
No 173
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.70 E-value=5.5e-17 Score=118.90 Aligned_cols=76 Identities=24% Similarity=0.462 Sum_probs=62.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEccCCCCCcEEEEEEcCHHHHHHHHHhcCCcc--cCCceEEEEEc
Q 020783 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYN--FDGYRLRVELA 80 (321)
Q Consensus 3 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~--i~g~~i~V~~a 80 (321)
..+.++|||+|||+++|+++|+++|++||.|.+|.|+.. ++|||||+|.+.++|++ |+|.. +.|+.|.|.++
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~--srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~a 81 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP--FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISNA 81 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS--CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC--CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEEc
Confidence 357899999999999999999999999999999999763 79999999999999984 44544 46999999998
Q ss_pred cCCC
Q 020783 81 HGGR 84 (321)
Q Consensus 81 ~~~~ 84 (321)
.+..
T Consensus 82 ~~k~ 85 (89)
T 3d2w_A 82 EPKH 85 (89)
T ss_dssp C---
T ss_pred CCCC
Confidence 8644
No 174
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=9.8e-18 Score=130.17 Aligned_cols=78 Identities=22% Similarity=0.208 Sum_probs=70.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCe----eEEEEc--cCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEE
Q 020783 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPI----VDIDLK--IPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRV 77 (321)
Q Consensus 4 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I----~~v~l~--~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V 77 (321)
.+.++|||+|||+++|+++|+++|++||.| ..|.|+ .+++++|||||+|.+.++|++|+.. |+..|+|+.|.|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V 99 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIEL 99 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEE
Confidence 567899999999999999999999999986 578774 4688899999999999999999995 999999999999
Q ss_pred EEccC
Q 020783 78 ELAHG 82 (321)
Q Consensus 78 ~~a~~ 82 (321)
..+..
T Consensus 100 ~~a~~ 104 (123)
T 2dha_A 100 FRSTA 104 (123)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 98753
No 175
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=3e-17 Score=119.98 Aligned_cols=80 Identities=24% Similarity=0.439 Sum_probs=68.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEccCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEcc
Q 020783 2 SSRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (321)
Q Consensus 2 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a~ 81 (321)
++.++++|||+|||+++|+++|+++|++||.|..|.+..+ ++|||||+|.+.++|++|+. ....+.|+.|.|.++.
T Consensus 1 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~--~~g~afV~f~~~~~a~~~~~--~~~~~~g~~l~v~~a~ 76 (88)
T 1wf0_A 1 GSSGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP--FRAFAFVTFADDQIAQSLCG--EDLIIKGISVHISNAE 76 (88)
T ss_dssp CCSCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS--CCSCCEEECSCHHHHHHTTT--CEEEETTEEEEEECCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC--CCCEEEEEECCHHHHHHHhc--CCceeCCEEEEEEecC
Confidence 3567899999999999999999999999999999999754 78999999999999986533 2345589999999988
Q ss_pred CCCC
Q 020783 82 GGRR 85 (321)
Q Consensus 82 ~~~~ 85 (321)
+...
T Consensus 77 ~~~~ 80 (88)
T 1wf0_A 77 PKHN 80 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6553
No 176
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.53 E-value=1.2e-18 Score=134.28 Aligned_cols=83 Identities=28% Similarity=0.401 Sum_probs=75.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeE--------EEEcc---CCCCCcEEEEEEcCHHHHHHHHHhcCCcccC
Q 020783 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVD--------IDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFD 71 (321)
Q Consensus 3 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~--------v~l~~---~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~ 71 (321)
..++++|||+|||+++|+++|+++|++||.|.. |.+.. ++.++|||||+|.+.++|++|+..|||..|.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 467899999999999999999999999999998 77743 4788999999999999999999999999999
Q ss_pred CceEEEEEccCCCC
Q 020783 72 GYRLRVELAHGGRR 85 (321)
Q Consensus 72 g~~i~V~~a~~~~~ 85 (321)
|+.|.|.++.....
T Consensus 84 g~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 84 GNPIKVSFATRRAD 97 (116)
Confidence 99999999986553
No 177
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.69 E-value=1.3e-17 Score=132.13 Aligned_cols=80 Identities=19% Similarity=0.256 Sum_probs=71.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcc--CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEcc
Q 020783 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (321)
Q Consensus 4 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~--~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a~ 81 (321)
.+.++|||+|||+++|+++|+++|++|| |..|.|+. +++++|||||+|.+.++|++|+ .+|+..|+|+.|.|.++.
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~ 121 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNS 121 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECC
Confidence 4568999999999999999999999999 67998854 4788999999999999999999 699999999999999987
Q ss_pred CCCC
Q 020783 82 GGRR 85 (321)
Q Consensus 82 ~~~~ 85 (321)
....
T Consensus 122 ~~~~ 125 (139)
T 2hgn_A 122 TTGA 125 (139)
T ss_dssp CSCC
T ss_pred CCCC
Confidence 6543
No 178
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.69 E-value=8.9e-17 Score=124.55 Aligned_cols=77 Identities=21% Similarity=0.218 Sum_probs=68.6
Q ss_pred CCCe--EEEcCCCCCCCHHHHHHHHhccCCeeEEEEccCCCCCcE-EEEEEcCHHHHHHHHHhcCCcccCC--ceEEEEE
Q 020783 5 SSRT--LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGY-AFLEFEDYRDAEDAIRGRDGYNFDG--YRLRVEL 79 (321)
Q Consensus 5 ~~~~--l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~~~~~kg~-aFVeF~~~e~A~~A~~~l~g~~i~g--~~i~V~~ 79 (321)
++++ |||+||++.+|+++|+++|++||.|..|.|... .|| |||+|.+.++|++|++.|||..|.| +.|.|.+
T Consensus 22 ps~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~---~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~ 98 (124)
T 2e5i_A 22 GNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR---NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEY 98 (124)
T ss_dssp CCSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES---SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEEC
T ss_pred CCcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC---CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEE
Confidence 4455 579999999999999999999999999999542 486 9999999999999999999999987 6899999
Q ss_pred ccCCC
Q 020783 80 AHGGR 84 (321)
Q Consensus 80 a~~~~ 84 (321)
|+...
T Consensus 99 Ak~~~ 103 (124)
T 2e5i_A 99 ARPTR 103 (124)
T ss_dssp CSCSC
T ss_pred ecCCc
Confidence 98765
No 179
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.68 E-value=1.8e-17 Score=124.66 Aligned_cols=79 Identities=22% Similarity=0.447 Sum_probs=72.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcc--CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEcc
Q 020783 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (321)
Q Consensus 4 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~--~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a~ 81 (321)
.++++|||+|||+++|+++|+++|++||.|..|.+.. ++.++|||||+|.+.++|++|+. +|..++|+.|.|.++.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECC
Confidence 4568999999999999999999999999999999954 57789999999999999999999 9999999999999988
Q ss_pred CCC
Q 020783 82 GGR 84 (321)
Q Consensus 82 ~~~ 84 (321)
...
T Consensus 85 ~~~ 87 (102)
T 2xs2_A 85 RKQ 87 (102)
T ss_dssp ECC
T ss_pred cCc
Confidence 654
No 180
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=1.3e-16 Score=122.42 Aligned_cols=76 Identities=32% Similarity=0.489 Sum_probs=64.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcc---C---CCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEE
Q 020783 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---P---PRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLR 76 (321)
Q Consensus 3 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~---~---~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~ 76 (321)
..++++|||+|||+++|+++|+++|++||+|. +.++. + +.++|||||+|.+.++|++|++.|++ ++|+.|.
T Consensus 5 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~--~~G~~~~ 81 (114)
T 2dnl_A 5 SSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLE--EDGKLYL 81 (114)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEE--ETTEEEE
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhh--cCCcEEE
Confidence 46789999999999999999999999999999 76643 2 68899999999999999999998843 6666666
Q ss_pred EEEcc
Q 020783 77 VELAH 81 (321)
Q Consensus 77 V~~a~ 81 (321)
+..+.
T Consensus 82 ~~~~~ 86 (114)
T 2dnl_A 82 CVSSP 86 (114)
T ss_dssp EECCS
T ss_pred eccCC
Confidence 65433
No 181
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.68 E-value=6.9e-17 Score=125.69 Aligned_cols=77 Identities=21% Similarity=0.248 Sum_probs=69.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCee--EEEEcc--CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEE
Q 020783 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIV--DIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (321)
Q Consensus 4 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~--~v~l~~--~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~ 79 (321)
.+.++|||+|||+++|+++|+++|++| .|. .|.|+. +++++|||||+|.+.++|++|+. +++..|+|+.|.|..
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V~~ 117 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG-KHKERIGHRYIEVFK 117 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEEEE
Confidence 457899999999999999999999999 677 888854 47889999999999999999999 588999999999988
Q ss_pred ccC
Q 020783 80 AHG 82 (321)
Q Consensus 80 a~~ 82 (321)
+..
T Consensus 118 a~~ 120 (126)
T 2hgm_A 118 SSQ 120 (126)
T ss_dssp ECH
T ss_pred CCH
Confidence 754
No 182
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.68 E-value=1.3e-16 Score=123.78 Aligned_cols=76 Identities=26% Similarity=0.482 Sum_probs=70.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEccCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEccCC
Q 020783 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (321)
Q Consensus 4 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a~~~ 83 (321)
.++++|||+|| ++|+++|+++|++||.|..|.+. .++|||||+|.+.++|++|+..|||..|.|+.|.|.++...
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~---~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~ 111 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD---PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQ 111 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE---TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSS
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe---CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCC
Confidence 56799999996 79999999999999999999996 56899999999999999999999999999999999999865
Q ss_pred C
Q 020783 84 R 84 (321)
Q Consensus 84 ~ 84 (321)
.
T Consensus 112 ~ 112 (121)
T 2bz2_A 112 P 112 (121)
T ss_dssp C
T ss_pred C
Confidence 4
No 183
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.67 E-value=2.2e-16 Score=128.50 Aligned_cols=79 Identities=23% Similarity=0.428 Sum_probs=73.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEc---cCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEE
Q 020783 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLK---IPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (321)
Q Consensus 3 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~---~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~ 79 (321)
..+.++|||+|||+++|+++|.++|++||.|..+.+. .++.++|||||+|.+.++|.+|+..|||..++|+.|.|.|
T Consensus 84 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 163 (166)
T 3md3_A 84 SDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINW 163 (166)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEe
Confidence 3567899999999999999999999999999999995 4578899999999999999999999999999999999999
Q ss_pred cc
Q 020783 80 AH 81 (321)
Q Consensus 80 a~ 81 (321)
|.
T Consensus 164 a~ 165 (166)
T 3md3_A 164 AA 165 (166)
T ss_dssp SC
T ss_pred cC
Confidence 86
No 184
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.66 E-value=3.3e-16 Score=118.16 Aligned_cols=80 Identities=20% Similarity=0.229 Sum_probs=71.6
Q ss_pred CCCCCeEEEcCCCC-----CCCHHHHHHHHhccCCeeEEEEccC----CCCCcEEEEEEcCHHHHHHHHHhcCCcccCCc
Q 020783 3 SRSSRTLYVGNLPG-----DTRMREVEDLFYKYGPIVDIDLKIP----PRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGY 73 (321)
Q Consensus 3 ~~~~~~l~V~nLp~-----~~te~~L~~~F~~~G~I~~v~l~~~----~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~ 73 (321)
..++++|+|.||.. +-++++|+++|++||+|.+|.|+.+ ++++|||||+|.+.++|.+|++.|||..++|+
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 56899999999963 2478999999999999999999643 57899999999999999999999999999999
Q ss_pred eEEEEEccC
Q 020783 74 RLRVELAHG 82 (321)
Q Consensus 74 ~i~V~~a~~ 82 (321)
.|.|.++..
T Consensus 85 ~i~v~~a~~ 93 (105)
T 2pe8_A 85 VVKACFYNL 93 (105)
T ss_dssp ECEEEECCH
T ss_pred EEEEEEcCH
Confidence 999999874
No 185
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.66 E-value=1.6e-16 Score=121.74 Aligned_cols=78 Identities=19% Similarity=0.291 Sum_probs=68.8
Q ss_pred CeEEEcCC----CCCCCHHHHHHHHhccCCeeEEEE---ccCCCCCcEEEEEEcC----HHH----HHHHHH--hcCCcc
Q 020783 7 RTLYVGNL----PGDTRMREVEDLFYKYGPIVDIDL---KIPPRPPGYAFLEFED----YRD----AEDAIR--GRDGYN 69 (321)
Q Consensus 7 ~~l~V~nL----p~~~te~~L~~~F~~~G~I~~v~l---~~~~~~kg~aFVeF~~----~e~----A~~A~~--~l~g~~ 69 (321)
+.|||+|| |+.+++++|+++|+.||+|.+|.+ +.||.++|||||+|.+ +++ |.+|+. .|||..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 67999999 999999999999999999999999 4578999999999996 433 888988 899999
Q ss_pred cCCceEEEEEccCCC
Q 020783 70 FDGYRLRVELAHGGR 84 (321)
Q Consensus 70 i~g~~i~V~~a~~~~ 84 (321)
|+|+.|.|.+.....
T Consensus 83 I~Gr~irV~ln~~g~ 97 (136)
T 2j8a_A 83 IMGFKFEVILNKHSI 97 (136)
T ss_dssp ETTEEEEEEECCTTH
T ss_pred ecCcEEEEEECcccH
Confidence 999999999976543
No 186
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.66 E-value=3.9e-16 Score=132.88 Aligned_cols=82 Identities=24% Similarity=0.442 Sum_probs=75.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcc---CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEc
Q 020783 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (321)
Q Consensus 4 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~---~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a 80 (321)
.+.++|||+|||+++|+++|+++|++||.|..|.+.. ++.++|||||+|.+.++|.+|+..|||..|+|+.|.|.++
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 4568999999999999999999999999999999954 5778999999999999999999999999999999999999
Q ss_pred cCCCC
Q 020783 81 HGGRR 85 (321)
Q Consensus 81 ~~~~~ 85 (321)
.....
T Consensus 203 ~~~~~ 207 (216)
T 2qfj_A 203 VTPPM 207 (216)
T ss_dssp SSCSS
T ss_pred cCCCC
Confidence 87643
No 187
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.66 E-value=6.3e-16 Score=126.55 Aligned_cols=134 Identities=16% Similarity=0.138 Sum_probs=72.1
Q ss_pred EEEcCHHHHHHHHHhcCCcccC--CceEEEEEccCCCCCCCCCCCCC--CCCCCCCCCCCCCCCcEEEEeCCCCCCCHHH
Q 020783 50 LEFEDYRDAEDAIRGRDGYNFD--GYRLRVELAHGGRRHSSSMDRYS--SYSSGGSRGVSRRSDYRVLVTGLPSSASWQD 125 (321)
Q Consensus 50 VeF~~~e~A~~A~~~l~g~~i~--g~~i~V~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~V~nl~~~~t~~~ 125 (321)
.+|++.++|+.|+..|++.... |+.+.+..+...... ...... ........+......++|||+|||..+++++
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~--~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~ 88 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIH--SYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDE 88 (165)
T ss_dssp ---------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCcccccccc--CccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHH
Confidence 7899999999999999987665 655655553221100 000000 0000112233345678999999999999999
Q ss_pred HHHHHHhcCCcEEEEEEEcCCC----cEEEEEeCCHHHHHHHHHHhCCCcccCccceeEEEEEecCCC
Q 020783 126 LKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDSR 189 (321)
Q Consensus 126 l~~~f~~~G~i~~~~i~~~~~~----g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~i~v~~~~~~ 189 (321)
|.++|.+||.|..|.|..+... |||||+|.+.++|+.|+..|||..+.| ..|.|......
T Consensus 89 L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g----~~l~V~~a~~~ 152 (165)
T 1rk8_A 89 IQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMG----QTIQVDWCFVK 152 (165)
T ss_dssp HHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETT----EECEEEESEEC
T ss_pred HHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECC----EEEEEEEecCC
Confidence 9999999999999999988543 699999999999999999999999999 77888776544
No 188
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.65 E-value=2.4e-16 Score=134.44 Aligned_cols=79 Identities=22% Similarity=0.361 Sum_probs=72.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcc-CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEccCC
Q 020783 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI-PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (321)
Q Consensus 5 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~-~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a~~~ 83 (321)
..++|||+|||+++|+++|+++|++||.|..|.|.. .+.++|||||+|.+.++|++|++.|||..|+|+.|.|.++...
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~~ 181 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 181 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCH
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCCC
Confidence 457899999999999999999999999999999954 4457999999999999999999999999999999999998754
No 189
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.64 E-value=2.7e-16 Score=128.43 Aligned_cols=78 Identities=19% Similarity=0.492 Sum_probs=72.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcc---CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEcc
Q 020783 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (321)
Q Consensus 5 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~---~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a~ 81 (321)
+.++|||+|||+++|+++|.++|++||.|..+.+.. ++.++|||||+|.+.++|.+|++ ++|..++|+.|.|.++.
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~ 164 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAE 164 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECC
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecC
Confidence 457899999999999999999999999999999954 57889999999999999999999 99999999999999987
Q ss_pred CC
Q 020783 82 GG 83 (321)
Q Consensus 82 ~~ 83 (321)
+.
T Consensus 165 pk 166 (167)
T 2cjk_A 165 PR 166 (167)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 190
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.64 E-value=3.8e-16 Score=128.16 Aligned_cols=77 Identities=29% Similarity=0.533 Sum_probs=72.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcc---CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEcc
Q 020783 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (321)
Q Consensus 5 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~---~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a~ 81 (321)
+.++|||+|||+++|+++|+++|++||.|..+.+.. ++.++|||||+|.+.++|.+|+..|||..++|+.|.|.+|.
T Consensus 93 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 93 GAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp TTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeCC
Confidence 468999999999999999999999999999999943 57789999999999999999999999999999999999973
No 191
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.64 E-value=3.9e-16 Score=128.59 Aligned_cols=78 Identities=24% Similarity=0.357 Sum_probs=72.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEccCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEccCC
Q 020783 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (321)
Q Consensus 4 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a~~~ 83 (321)
.+.++|||+|||+++|+++|+++|++||.|..+ ..++.++|||||+|.+.++|.+|+..|||..|+|+.|.|.++.+.
T Consensus 97 ~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~--~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 97 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV--SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp GGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE--CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSSC
T ss_pred ccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe--cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCCC
Confidence 356899999999999999999999999999888 667889999999999999999999999999999999999998753
No 192
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.64 E-value=6.3e-16 Score=129.79 Aligned_cols=81 Identities=30% Similarity=0.524 Sum_probs=75.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcc---CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEc
Q 020783 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (321)
Q Consensus 4 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~---~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a 80 (321)
.+.++|||+|||+++|+++|+++|++||.|..|.+.. ++.++|||||+|.+.++|.+|+..|||..|+|+.|.|.++
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 191 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 191 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 4679999999999999999999999999999999953 6778999999999999999999999999999999999999
Q ss_pred cCCC
Q 020783 81 HGGR 84 (321)
Q Consensus 81 ~~~~ 84 (321)
.+..
T Consensus 192 ~~~~ 195 (198)
T 2yh0_A 192 SVGA 195 (198)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8654
No 193
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.63 E-value=5.3e-16 Score=122.66 Aligned_cols=120 Identities=15% Similarity=0.078 Sum_probs=72.9
Q ss_pred CcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcEEEEeCCCCCCCHH
Q 020783 45 PGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQ 124 (321)
Q Consensus 45 kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~nl~~~~t~~ 124 (321)
.-++|++|.++..|..|+..|+|....|..- +.+ +..++......+|||+|||..++++
T Consensus 4 ~~~~~~~~~~~~~~~~a~~~~~g~~~~g~~~-~~~--------------------~~~~~~~~~~~~l~V~nLp~~~te~ 62 (135)
T 2lea_A 4 SHHHHHHSSGLVPRGSHMASMTGGQQMGRGS-MSY--------------------GRPPPDVEGMTSLKVDNLTYRTSPD 62 (135)
T ss_dssp --------------------------------CCS--------------------CCSCSSGGGCCCEEEECCCSSCHHH
T ss_pred cccccccccCCCchhhhhhhccCCCCCCCCC-CCc--------------------CCCCCCCCCCCEEEEeCCCCCCCHH
Confidence 3578999999999999999998876555431 111 1122334456799999999999999
Q ss_pred HHHHHHHhcCCcEEEEEEEcC----CCcEEEEEeCCHHHHHHHHHHhCCCcccCccceeEEEEEecCCC
Q 020783 125 DLKDHMRRAGDVCFSQVFRDR----GGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDSR 189 (321)
Q Consensus 125 ~l~~~f~~~G~i~~~~i~~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~i~v~~~~~~ 189 (321)
+|+++|.+||.|..+.+..+. ..|||||+|.+.++|++|++.||+..+.| ..|.|......
T Consensus 63 ~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g----~~l~V~~a~~~ 127 (135)
T 2lea_A 63 TLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDG----RELRVQMARYG 127 (135)
T ss_dssp HHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSS----SCCEEEECCCC
T ss_pred HHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECC----EEEEEEECCCC
Confidence 999999999999999998764 34699999999999999999999999999 77788776554
No 194
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=2.5e-15 Score=114.88 Aligned_cols=81 Identities=23% Similarity=0.338 Sum_probs=71.1
Q ss_pred CCCCCeEEEcCCCCCCC-----------HHHHHHHHhccCCeeEEEEccCCCCCcEEEEEEcCHHHHHHHHHhcCCcccC
Q 020783 3 SRSSRTLYVGNLPGDTR-----------MREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFD 71 (321)
Q Consensus 3 ~~~~~~l~V~nLp~~~t-----------e~~L~~~F~~~G~I~~v~l~~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~ 71 (321)
..++++|+|.||....+ +++|+++|++||.|..|.| .+..++|||||+|.+.++|++|+..|||..|+
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~ 90 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDRHPDGVASVSFRDPEEADYCIQTLDGRWFG 90 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETTCTTCEEEEECSCHHHHHHHHHHSTTCEET
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecCCCCEEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 35789999999944432 6899999999999999977 44568999999999999999999999999999
Q ss_pred CceEEEEEccCCC
Q 020783 72 GYRLRVELAHGGR 84 (321)
Q Consensus 72 g~~i~V~~a~~~~ 84 (321)
|+.|.|.++.+..
T Consensus 91 gr~l~v~~a~~~~ 103 (112)
T 2dit_A 91 GRQITAQAWDGTT 103 (112)
T ss_dssp TEECEEEECCSCC
T ss_pred CcEEEEEEeCCCC
Confidence 9999999987654
No 195
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.62 E-value=1.4e-15 Score=115.86 Aligned_cols=79 Identities=33% Similarity=0.519 Sum_probs=71.4
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC-CcEEEEEEEcCCCcEEEEEeCCHHHHHHHHHHhCCCcccCccceeEEEEEe
Q 020783 107 RSDYRVLVTGLPSSASWQDLKDHMRRAG-DVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 185 (321)
Q Consensus 107 ~~~~~i~V~nl~~~~t~~~l~~~f~~~G-~i~~~~i~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~i~v~~ 185 (321)
...++|||+|||.++++++|+++|.+|| +|..+.+......|||||+|.+.++|++|++.|||..+.| +.|.|..
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~G----r~i~V~~ 101 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRG----SVITVER 101 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETT----EEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECC----eEEEEEE
Confidence 4567999999999999999999999999 9999999766667899999999999999999999999999 8899988
Q ss_pred cCCC
Q 020783 186 YDSR 189 (321)
Q Consensus 186 ~~~~ 189 (321)
....
T Consensus 102 a~~~ 105 (111)
T 2jvr_A 102 DDNP 105 (111)
T ss_dssp SCC-
T ss_pred CCCC
Confidence 7554
No 196
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.62 E-value=1.3e-15 Score=124.33 Aligned_cols=77 Identities=32% Similarity=0.526 Sum_probs=71.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcc---CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCC--ceEEEE
Q 020783 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDG--YRLRVE 78 (321)
Q Consensus 4 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~---~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g--~~i~V~ 78 (321)
.+.++|||+|||+++|+++|+++|++||.|..+.+.. ++.++|||||+|.+.++|.+|+..|||..+.| ++|.|.
T Consensus 87 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~ 166 (168)
T 1b7f_A 87 IKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVR 166 (168)
T ss_dssp TTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEE
T ss_pred CCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEE
Confidence 4678999999999999999999999999999999954 56778999999999999999999999999988 999999
Q ss_pred Ec
Q 020783 79 LA 80 (321)
Q Consensus 79 ~a 80 (321)
+|
T Consensus 167 ~A 168 (168)
T 1b7f_A 167 LA 168 (168)
T ss_dssp EC
T ss_pred eC
Confidence 86
No 197
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.62 E-value=5.5e-16 Score=133.36 Aligned_cols=78 Identities=24% Similarity=0.347 Sum_probs=71.0
Q ss_pred CCCCeEEEcCCCCCC---------CHHHHHHHHhccCCeeEEEEccCCCCCcEEEEEEcCHHHHHHHHHhcCCccc----
Q 020783 4 RSSRTLYVGNLPGDT---------RMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNF---- 70 (321)
Q Consensus 4 ~~~~~l~V~nLp~~~---------te~~L~~~F~~~G~I~~v~l~~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i---- 70 (321)
.+.++||||||+..+ |+++|+++|++||+|.+|.|.. ++|||||+|.+.++|+.|++.|+|..|
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~---~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~ 208 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE---SKNCGFVKFKYQANAEFAKEAMSNQTLLLPS 208 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG---GGTEEEEEESSHHHHHHHHHHHTTCCCCCTT
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC---CCCEEEEEeCCHHHHHHHHHHhCCCEEeccc
Confidence 567999999999998 7999999999999999999974 489999999999999999999999999
Q ss_pred --------CCceEEEEEccCCC
Q 020783 71 --------DGYRLRVELAHGGR 84 (321)
Q Consensus 71 --------~g~~i~V~~a~~~~ 84 (321)
.|+.|.|.||+...
T Consensus 209 ~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 209 DKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp STTGGGGGGSCCCEEEECC---
T ss_pred cccccccCCCCEEEEEEccCCC
Confidence 89999999998644
No 198
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.62 E-value=1.4e-15 Score=127.48 Aligned_cols=81 Identities=22% Similarity=0.425 Sum_probs=71.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcc---CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEcc
Q 020783 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (321)
Q Consensus 5 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~---~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a~ 81 (321)
+.++|||+|||+++|+++|+++|++||.|..|.+.. ++.++|||||+|.+.++|.+|+.. +|..|+|+.|.|.++.
T Consensus 103 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a~ 181 (196)
T 1l3k_A 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKAL 181 (196)
T ss_dssp CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEECC
T ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEecC
Confidence 458999999999999999999999999999999954 578899999999999999999995 8999999999999998
Q ss_pred CCCCC
Q 020783 82 GGRRH 86 (321)
Q Consensus 82 ~~~~~ 86 (321)
+....
T Consensus 182 ~k~~~ 186 (196)
T 1l3k_A 182 SKQEM 186 (196)
T ss_dssp -----
T ss_pred ChhHh
Confidence 76543
No 199
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.61 E-value=1.4e-15 Score=125.02 Aligned_cols=77 Identities=19% Similarity=0.317 Sum_probs=70.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcc--CCCCCcEEEEEEcCHHHHHHHHHhcCCcccC---CceEEEEE
Q 020783 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFD---GYRLRVEL 79 (321)
Q Consensus 5 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~--~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~---g~~i~V~~ 79 (321)
+.++|||+|||+++|+++|+++|++||.|..+.+.. ++.++|||||+|.+.++|.+|+..|||..+. |++|.|.|
T Consensus 94 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ 173 (175)
T 3nmr_A 94 EDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKF 173 (175)
T ss_dssp GGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEE
T ss_pred CCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEe
Confidence 568999999999999999999999999999999954 5678999999999999999999999998776 49999999
Q ss_pred cc
Q 020783 80 AH 81 (321)
Q Consensus 80 a~ 81 (321)
|.
T Consensus 174 ad 175 (175)
T 3nmr_A 174 AD 175 (175)
T ss_dssp CC
T ss_pred cC
Confidence 73
No 200
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.61 E-value=5.4e-15 Score=110.39 Aligned_cols=76 Identities=21% Similarity=0.354 Sum_probs=69.3
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCCC----cEEEEEeCCHHHHHHHHHHhCCCcccCccceeEEEE
Q 020783 108 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 183 (321)
Q Consensus 108 ~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~----g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~i~v 183 (321)
.+++|||+|||.++++++|+++|.+||+|..+.+..++.. |||||+|.+.++|++|++.|||..+.| +.|.|
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g----r~l~V 93 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQS----KTIKV 93 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETT----EECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECC----EEEEE
Confidence 3568999999999999999999999999999999987643 599999999999999999999999999 78888
Q ss_pred EecC
Q 020783 184 REYD 187 (321)
Q Consensus 184 ~~~~ 187 (321)
..++
T Consensus 94 ~~Ak 97 (99)
T 4fxv_A 94 SYAR 97 (99)
T ss_dssp EECC
T ss_pred EEee
Confidence 7764
No 201
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.61 E-value=2.1e-15 Score=126.55 Aligned_cols=77 Identities=16% Similarity=0.389 Sum_probs=69.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcc--CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEccCC
Q 020783 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (321)
Q Consensus 6 ~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~--~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a~~~ 83 (321)
.++|||+|||+++|+++|.++|++||.|..|.|.. ++.++|||||+|.+.++|++|+..+ +..++|+.|.|.++..-
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~y 187 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDDY 187 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTTC
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHHH
Confidence 48999999999999999999999999999999954 5778999999999999999999855 56899999999987653
No 202
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.60 E-value=2.3e-15 Score=122.54 Aligned_cols=76 Identities=32% Similarity=0.588 Sum_probs=69.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcc---CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCce--EEEEE
Q 020783 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYR--LRVEL 79 (321)
Q Consensus 5 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~---~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~--i~V~~ 79 (321)
+.++|||+|||+++|+++|+++|++||.|..+.+.. ++.++|||||+|.+.++|.+|+..|||..+.|+. |.|.|
T Consensus 87 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~ 166 (167)
T 1fxl_A 87 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKF 166 (167)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEE
T ss_pred CCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEe
Confidence 568999999999999999999999999999999953 5678999999999999999999999999999965 88887
Q ss_pred c
Q 020783 80 A 80 (321)
Q Consensus 80 a 80 (321)
|
T Consensus 167 A 167 (167)
T 1fxl_A 167 A 167 (167)
T ss_dssp C
T ss_pred C
Confidence 5
No 203
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.59 E-value=1.5e-14 Score=111.19 Aligned_cols=79 Identities=14% Similarity=0.251 Sum_probs=70.6
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcC---CCcEEEEEeCCHHHHHHHHHHhCCCcccCccceeEEEE
Q 020783 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDR---GGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 183 (321)
Q Consensus 107 ~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~---~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~i~v 183 (321)
....+|||+|||.++++++|+++|.+||.|..+.+..+. ..|||||+|.+.++|++|++.|||..+.| ..|.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g----~~l~V 80 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHG----KAIKV 80 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSS----SBCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECC----EEEEE
Confidence 345699999999999999999999999999999999876 23699999999999999999999999999 67778
Q ss_pred EecCCC
Q 020783 184 REYDSR 189 (321)
Q Consensus 184 ~~~~~~ 189 (321)
......
T Consensus 81 ~~a~~~ 86 (116)
T 2fy1_A 81 EQAKKP 86 (116)
T ss_dssp EECCCS
T ss_pred EECCCC
Confidence 776554
No 204
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.58 E-value=6.6e-15 Score=114.87 Aligned_cols=81 Identities=20% Similarity=0.299 Sum_probs=71.0
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCC----CcEEEEEeCCHHHHHHHHHHhCCCcccCccceeE
Q 020783 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSY 180 (321)
Q Consensus 105 ~~~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 180 (321)
......+|||+|||..+++++|+++|.+||.|..|.+..+.. .+||||+|.+.++|+.|++.||+..+.| ..
T Consensus 18 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~ 93 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMG----QP 93 (126)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSS----SB
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCC----eE
Confidence 345578999999999999999999999999999999987743 4699999999999999999999999999 66
Q ss_pred EEEEecCCC
Q 020783 181 VRVREYDSR 189 (321)
Q Consensus 181 i~v~~~~~~ 189 (321)
|.|......
T Consensus 94 l~v~~a~~~ 102 (126)
T 3ex7_B 94 ISVDWCFVR 102 (126)
T ss_dssp CEEEESEES
T ss_pred EEEEEecCC
Confidence 777766544
No 205
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.58 E-value=5e-15 Score=111.73 Aligned_cols=81 Identities=23% Similarity=0.397 Sum_probs=70.8
Q ss_pred CCCCCCeEEEcCC--CCCCC--------HHHHHHHHhccCCeeEEEEccC-----CCCCcEEEEEEcCHHHHHHHHHhcC
Q 020783 2 SSRSSRTLYVGNL--PGDTR--------MREVEDLFYKYGPIVDIDLKIP-----PRPPGYAFLEFEDYRDAEDAIRGRD 66 (321)
Q Consensus 2 ~~~~~~~l~V~nL--p~~~t--------e~~L~~~F~~~G~I~~v~l~~~-----~~~kg~aFVeF~~~e~A~~A~~~l~ 66 (321)
+..|++.|.|.|+ |..+. +++|++.|++||+|.+|.|+.+ +.++|||||+|.+.++|.+|++.||
T Consensus 1 ~g~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~ln 80 (105)
T 3v4m_A 1 GGHPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLT 80 (105)
T ss_dssp CCSCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhC
Confidence 3579999999998 44443 3689999999999999999653 3578999999999999999999999
Q ss_pred CcccCCceEEEEEccC
Q 020783 67 GYNFDGYRLRVELAHG 82 (321)
Q Consensus 67 g~~i~g~~i~V~~a~~ 82 (321)
|..++|+.|.|.++..
T Consensus 81 G~~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 81 GRKFANRVVVTKYCDP 96 (105)
T ss_dssp TCEETTEECEEEEECH
T ss_pred CCEeCCCEEEEEEeCH
Confidence 9999999999999764
No 206
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=1.5e-14 Score=108.65 Aligned_cols=84 Identities=19% Similarity=0.152 Sum_probs=74.0
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCC----CcEEEEEeCCHHHHHHHHHHhCCCcccCccce
Q 020783 103 GVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSR 178 (321)
Q Consensus 103 ~~~~~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~ 178 (321)
.+......+|||+|||..+++++|+++|.+||.|..+.+..+.. .+||||+|.+.++|++|++.||+..+.|
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g---- 82 (103)
T 2dnm_A 7 GPDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDG---- 82 (103)
T ss_dssp SSCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTT----
T ss_pred CCCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECC----
Confidence 34455678999999999999999999999999999999988754 4699999999999999999999999999
Q ss_pred eEEEEEecCCCC
Q 020783 179 SYVRVREYDSRR 190 (321)
Q Consensus 179 ~~i~v~~~~~~r 190 (321)
..|.|......+
T Consensus 83 ~~l~V~~a~~~~ 94 (103)
T 2dnm_A 83 RELRVQVARYGR 94 (103)
T ss_dssp BCCEEEECSSCC
T ss_pred cEEEEEECCcCC
Confidence 778888776553
No 207
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.58 E-value=6.2e-15 Score=130.89 Aligned_cols=75 Identities=21% Similarity=0.384 Sum_probs=70.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEccCCCCCcEEEEEEcCHHHHHHHHHhcCCcccC-CceEEEEEcc
Q 020783 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFD-GYRLRVELAH 81 (321)
Q Consensus 5 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~-g~~i~V~~a~ 81 (321)
++++|||+|||+++|+++|+++|++||.|..|.+.... +|||||+|.+.++|.+|+..|||..|. |+.|.|.|++
T Consensus 206 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 206 PNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR--HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC--CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 67899999999999999999999999999999997432 689999999999999999999999999 9999999986
No 208
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.58 E-value=1.4e-14 Score=111.30 Aligned_cols=77 Identities=22% Similarity=0.327 Sum_probs=70.0
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCCC--cEEEEEeCCHHHHHHHHHHhCCCcccCccceeEEEEEec
Q 020783 109 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG--MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREY 186 (321)
Q Consensus 109 ~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~--g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~i~v~~~ 186 (321)
..+|||+|||.++++++|+++|.+||.|..+.|..+.++ |||||+|.+.++|+.|++.|++..+.| +.|.|...
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g----~~i~V~~a 80 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLND----RKVFVGRF 80 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETT----EECEEEES
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECC----EEEEEEEC
Confidence 458999999999999999999999999999999988653 699999999999999999999999999 78888776
Q ss_pred CCC
Q 020783 187 DSR 189 (321)
Q Consensus 187 ~~~ 189 (321)
...
T Consensus 81 ~~~ 83 (115)
T 4f25_A 81 KSR 83 (115)
T ss_dssp SCC
T ss_pred CCc
Confidence 543
No 209
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.57 E-value=1.6e-14 Score=103.60 Aligned_cols=73 Identities=12% Similarity=0.146 Sum_probs=67.3
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCCCcEEEEEeCCHHHHHHHHHHhCCCcccCccceeEEEEEec
Q 020783 108 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREY 186 (321)
Q Consensus 108 ~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~i~v~~~ 186 (321)
...-|+|+||++.+++++|+++|.+||+|..+++.. ..|||||+|.+.++|.+|++.||+..+.| +.|+|...
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~--~kGfaFVey~~~~eA~~Ai~~Ln~~~l~g----r~I~V~~A 78 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL--NQGIALCKYTTREEANKAQMALNNCVLAN----TTIFAESP 78 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHTTEEETT----EEEEEECC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC--CCcEEEEEECCHHHHHHHHHHhcCCEECC----cEEEEEEC
Confidence 455799999999999999999999999999999876 56799999999999999999999999999 88888765
No 210
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=3.3e-14 Score=107.94 Aligned_cols=83 Identities=22% Similarity=0.275 Sum_probs=73.3
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCC-CcEEEEEeCCHHHHHHHHHHhCCCcccCccceeEEE
Q 020783 104 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG-GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 182 (321)
Q Consensus 104 ~~~~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~-~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~i~ 182 (321)
+......+|||+|||.++++++|+++|.+||.|..+.+..+.. .+||||+|.+.++|++|++.||+..+.| ..|.
T Consensus 17 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l~ 92 (109)
T 1x4a_A 17 PAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDG----YRLR 92 (109)
T ss_dssp CCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETT----EECE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECC----eEEE
Confidence 3445678999999999999999999999999999999977644 5799999999999999999999999999 8888
Q ss_pred EEecCCCC
Q 020783 183 VREYDSRR 190 (321)
Q Consensus 183 v~~~~~~r 190 (321)
|......+
T Consensus 93 V~~a~~~~ 100 (109)
T 1x4a_A 93 VEFPRSGR 100 (109)
T ss_dssp EECCCCCC
T ss_pred EEEcccCC
Confidence 88876553
No 211
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=3.9e-14 Score=105.54 Aligned_cols=81 Identities=16% Similarity=0.142 Sum_probs=72.7
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcC----CCcEEEEEeCCHHHHHHHHHHhCCCcccCccceeEEE
Q 020783 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDR----GGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 182 (321)
Q Consensus 107 ~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~i~ 182 (321)
....+|||+|||..+++++|+++|.+||+|..+.+..+. ..+||||+|.+.++|+.|++.||+..+.| ..|.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~ 81 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQG----RMLH 81 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSS----CEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECC----cEEE
Confidence 456799999999999999999999999999999998875 33699999999999999999999999999 8888
Q ss_pred EEecCCCCC
Q 020783 183 VREYDSRRS 191 (321)
Q Consensus 183 v~~~~~~r~ 191 (321)
|........
T Consensus 82 V~~a~~~~~ 90 (99)
T 1whw_A 82 VLPSTIKKE 90 (99)
T ss_dssp EEECCCCST
T ss_pred EEEcCCCcc
Confidence 888766543
No 212
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=8e-14 Score=104.68 Aligned_cols=82 Identities=10% Similarity=0.078 Sum_probs=73.4
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCC--CcEEEEEeCCHHHHHHHHHHhCCCcccCccceeEEE
Q 020783 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG--GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 182 (321)
Q Consensus 105 ~~~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~--~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~i~ 182 (321)
......+|||+|||..+++++|+++|.+||.|..|.+..+.. .+||||+|.+.++|++|++.||+..+.| ..|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~ 86 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILG----KEVK 86 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETT----EEEE
T ss_pred CCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCC----CeEE
Confidence 345678999999999999999999999999999999998754 3799999999999999999999999999 8888
Q ss_pred EEecCCCC
Q 020783 183 VREYDSRR 190 (321)
Q Consensus 183 v~~~~~~r 190 (321)
|.......
T Consensus 87 V~~a~~~~ 94 (103)
T 2cqi_A 87 VNWATTPS 94 (103)
T ss_dssp EEECCCTT
T ss_pred EEECCCCc
Confidence 88876653
No 213
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.57 E-value=5.6e-15 Score=124.21 Aligned_cols=78 Identities=18% Similarity=0.266 Sum_probs=72.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccC-CeeEEEEccCCCCCcEEEEEEcCHHHHHHHHHhcCCcccC-CceEEEEEcc
Q 020783 4 RSSRTLYVGNLPGDTRMREVEDLFYKYG-PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFD-GYRLRVELAH 81 (321)
Q Consensus 4 ~~~~~l~V~nLp~~~te~~L~~~F~~~G-~I~~v~l~~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~-g~~i~V~~a~ 81 (321)
.++++|||+|||+++|+++|+++|++|| .|..|.+..+ .+|||||+|.+.++|.+|+..|||..++ |+.|.|.|++
T Consensus 118 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~--~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~ 195 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK--DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK 195 (198)
T ss_dssp CCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST--TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC--CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeec
Confidence 3589999999999999999999999999 9999999643 3899999999999999999999999999 9999999987
Q ss_pred CC
Q 020783 82 GG 83 (321)
Q Consensus 82 ~~ 83 (321)
+.
T Consensus 196 ~~ 197 (198)
T 1qm9_A 196 ST 197 (198)
T ss_dssp CC
T ss_pred cc
Confidence 53
No 214
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=6.2e-14 Score=105.27 Aligned_cols=83 Identities=18% Similarity=0.221 Sum_probs=73.8
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCC--CcEEEEEeCCHHHHHHHHHHhCCCcccCccceeEE
Q 020783 104 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG--GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 181 (321)
Q Consensus 104 ~~~~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~--~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~i 181 (321)
.......+|||+|||..+++++|+++|.+||.|..+.+..+.. .+||||+|.+.++|+.|++.||+..+.| ..|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l 85 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEG----RKI 85 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETT----EEC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECC----EEE
Confidence 3445678999999999999999999999999999999998754 4799999999999999999999999999 888
Q ss_pred EEEecCCCC
Q 020783 182 RVREYDSRR 190 (321)
Q Consensus 182 ~v~~~~~~r 190 (321)
.|.......
T Consensus 86 ~v~~a~~~~ 94 (103)
T 2cq3_A 86 EVNNATARV 94 (103)
T ss_dssp EEEECCSSC
T ss_pred EEEEcccCC
Confidence 888876553
No 215
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=5.2e-14 Score=103.01 Aligned_cols=77 Identities=17% Similarity=0.280 Sum_probs=69.6
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCCCcEEEEEeCCHHHHHHHHHHhCCCcccCccceeEEEEEe
Q 020783 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 185 (321)
Q Consensus 106 ~~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~i~v~~ 185 (321)
.....+|||+|||.++++++|+++|.+||.|..+.+. .+||||+|.+.++|+.|++.||+..+.| ..|.|..
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l~v~~ 76 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII----KNYGFVHIEDKTAAEDAIRNLHHYKLHG----VNINVEA 76 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE----TTEEEEEESSHHHHHHHHHHHTTCBCSS----CBCEEEC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE----CCEEEEEECCHHHHHHHHHHhcCCccCC----cEEEEEE
Confidence 3456799999999999999999999999999999998 4599999999999999999999999999 7788887
Q ss_pred cCCCC
Q 020783 186 YDSRR 190 (321)
Q Consensus 186 ~~~~r 190 (321)
.....
T Consensus 77 a~~~~ 81 (90)
T 2dnq_A 77 SKNKS 81 (90)
T ss_dssp SSCCC
T ss_pred CCCCC
Confidence 76553
No 216
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.56 E-value=5.2e-15 Score=125.38 Aligned_cols=77 Identities=14% Similarity=0.173 Sum_probs=68.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCe--eEEEEccC-CCCCcEEEEEEcCHHHHHHHHHhcCCcccCCc----eEE
Q 020783 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPI--VDIDLKIP-PRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGY----RLR 76 (321)
Q Consensus 4 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I--~~v~l~~~-~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~----~i~ 76 (321)
.|+++|||+|||+++|+++|+++|++||.| ..+.+..+ +..+|||||+|.+.++|.+|+..|||..|.|. ++.
T Consensus 121 ~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~ 200 (205)
T 3tyt_A 121 HPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYT 200 (205)
T ss_dssp CCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEE
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceE
Confidence 357899999999999999999999999999 89988653 45579999999999999999999999999887 577
Q ss_pred EEEc
Q 020783 77 VELA 80 (321)
Q Consensus 77 V~~a 80 (321)
|++|
T Consensus 201 vk~~ 204 (205)
T 3tyt_A 201 LKLC 204 (205)
T ss_dssp CEEE
T ss_pred EEec
Confidence 7765
No 217
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.56 E-value=1.3e-14 Score=124.98 Aligned_cols=78 Identities=18% Similarity=0.266 Sum_probs=71.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccC-CeeEEEEccCCCCCcEEEEEEcCHHHHHHHHHhcCCcccC-CceEEEEEcc
Q 020783 4 RSSRTLYVGNLPGDTRMREVEDLFYKYG-PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFD-GYRLRVELAH 81 (321)
Q Consensus 4 ~~~~~l~V~nLp~~~te~~L~~~F~~~G-~I~~v~l~~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~-g~~i~V~~a~ 81 (321)
.++++|||+|||+++|+++|+++|++|| .|..|.+... .+|||||+|.+.++|.+|+..|||..+. |+.|.|.|++
T Consensus 149 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~--~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~ 226 (229)
T 2adc_A 149 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK--DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK 226 (229)
T ss_dssp CSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS--STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECS
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC--CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEec
Confidence 3579999999999999999999999999 9999999542 4799999999999999999999999999 9999999987
Q ss_pred CC
Q 020783 82 GG 83 (321)
Q Consensus 82 ~~ 83 (321)
+.
T Consensus 227 ~~ 228 (229)
T 2adc_A 227 ST 228 (229)
T ss_dssp SC
T ss_pred CC
Confidence 53
No 218
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=1.5e-13 Score=105.06 Aligned_cols=81 Identities=21% Similarity=0.315 Sum_probs=72.3
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCCC---cEEEEEeCCHHHHHHHHHHhCCCcccCccceeEE
Q 020783 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG---MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 181 (321)
Q Consensus 105 ~~~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~---g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~i 181 (321)
......+|||+|||..+++++|+++|.+||.|..+.+..+..+ +||||+|.+.++|+.|++.||+..+.| ..|
T Consensus 11 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l 86 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFD----RPM 86 (114)
T ss_dssp CCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETT----EEC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCC----CEE
Confidence 3455779999999999999999999999999999999988653 599999999999999999999999999 788
Q ss_pred EEEecCCC
Q 020783 182 RVREYDSR 189 (321)
Q Consensus 182 ~v~~~~~~ 189 (321)
.|......
T Consensus 87 ~v~~a~~~ 94 (114)
T 2do0_A 87 HVKMDERA 94 (114)
T ss_dssp EEEECSCC
T ss_pred EEEEcccC
Confidence 88876544
No 219
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=5e-14 Score=105.02 Aligned_cols=81 Identities=16% Similarity=0.305 Sum_probs=71.2
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCC----CcEEEEEeCCHHHHHHHHHHhCCCcccCccceeE
Q 020783 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSY 180 (321)
Q Consensus 105 ~~~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 180 (321)
......+|||+|||..+++++|+++|.+||.|..+.+..++. .+||||+|.+.++|++|++ ||+..+.| ..
T Consensus 6 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g----~~ 80 (99)
T 2dgs_A 6 SGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMG----KK 80 (99)
T ss_dssp CCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSS----CB
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECC----eE
Confidence 345667999999999999999999999999999999988753 4799999999999999998 99999999 77
Q ss_pred EEEEecCCCC
Q 020783 181 VRVREYDSRR 190 (321)
Q Consensus 181 i~v~~~~~~r 190 (321)
|.|.......
T Consensus 81 l~V~~a~~~~ 90 (99)
T 2dgs_A 81 VEVKRAEPRD 90 (99)
T ss_dssp CEEEECCCCC
T ss_pred EEEEECCCCc
Confidence 8887766553
No 220
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.55 E-value=4.1e-14 Score=107.65 Aligned_cols=78 Identities=17% Similarity=0.084 Sum_probs=71.0
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCCC----cEEEEEeCCHHHHHHHHHHhCCCcccCccceeEEEE
Q 020783 108 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 183 (321)
Q Consensus 108 ~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~----g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~i~v 183 (321)
+..+|||+|||.++++++|+++|.+||.|..+.|..++.+ |||||+|.+.++|++|++.|||..+.| +.|.|
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~g----r~i~V 80 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMG----NIIHA 80 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETT----EECEE
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECC----eEEEE
Confidence 4569999999999999999999999999999999988653 699999999999999999999999999 78888
Q ss_pred EecCCC
Q 020783 184 REYDSR 189 (321)
Q Consensus 184 ~~~~~~ 189 (321)
..+...
T Consensus 81 ~~a~~~ 86 (110)
T 3s8s_A 81 QLDIKG 86 (110)
T ss_dssp EECSTT
T ss_pred EECCCC
Confidence 876544
No 221
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=3.8e-14 Score=106.48 Aligned_cols=81 Identities=15% Similarity=0.189 Sum_probs=71.8
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEc--CCCcEEEEEeCCHHHHHHHHHHhCCCcccCccceeEEEE
Q 020783 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRD--RGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 183 (321)
Q Consensus 106 ~~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~i~v 183 (321)
.....+|||+|||..+++++|+++|.+||.|..+.+..+ ...+||||+|.+.++|+.|++.||+..+.| ..|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l~V 87 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT----KPLYV 87 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSS----SBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCC----cEEEE
Confidence 446779999999999999999999999999999999987 233699999999999999999999999999 77888
Q ss_pred EecCCCC
Q 020783 184 REYDSRR 190 (321)
Q Consensus 184 ~~~~~~r 190 (321)
.......
T Consensus 88 ~~a~~~~ 94 (103)
T 2d9p_A 88 ALAQRKE 94 (103)
T ss_dssp EECSSCC
T ss_pred EEecccc
Confidence 7766553
No 222
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=7.9e-14 Score=102.47 Aligned_cols=77 Identities=25% Similarity=0.367 Sum_probs=70.6
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCCCcEEEEEeCCHHHHHHHHHHhCCCcccCccceeEEEEE
Q 020783 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVR 184 (321)
Q Consensus 105 ~~~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~i~v~ 184 (321)
......+|||+|||..+++++|+++|.+||.|..+.+..+ ||||+|.+.++|++|++.||+..+.| ..|.|.
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~----~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~V~ 77 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD----YAFVHMERAEDAVEAIRGLDNTEFQG----KRMHVQ 77 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECSS----EEEEEESCHHHHHHHHHHHTTEEETT----EEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECC----EEEEEECCHHHHHHHHHHhCCCeeCC----cEEEEE
Confidence 3456789999999999999999999999999999999855 99999999999999999999999999 889888
Q ss_pred ecCCC
Q 020783 185 EYDSR 189 (321)
Q Consensus 185 ~~~~~ 189 (321)
.....
T Consensus 78 ~a~~~ 82 (92)
T 2dgt_A 78 LSTSR 82 (92)
T ss_dssp ESSCC
T ss_pred EccCC
Confidence 87655
No 223
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=6.2e-14 Score=103.60 Aligned_cols=79 Identities=15% Similarity=0.187 Sum_probs=71.0
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCC----CcEEEEEeCCHHHHHHHHHHhCCCcccCccceeEEEE
Q 020783 108 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 183 (321)
Q Consensus 108 ~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~i~v 183 (321)
+..+|||+|||..+++++|+++|.+||.|..+.+..+.. .+||||+|.+.++|++|++.||+..+.| ..|.|
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~V 79 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAG----RPMRV 79 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSS----SCCEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCC----cEEEE
Confidence 456999999999999999999999999999999998754 4699999999999999999999999999 77888
Q ss_pred EecCCCC
Q 020783 184 REYDSRR 190 (321)
Q Consensus 184 ~~~~~~r 190 (321)
.......
T Consensus 80 ~~a~~~~ 86 (95)
T 2dnz_A 80 GHVTERL 86 (95)
T ss_dssp EESSCCC
T ss_pred EEccccc
Confidence 8776553
No 224
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=5.3e-14 Score=105.43 Aligned_cols=81 Identities=21% Similarity=0.308 Sum_probs=71.4
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCC----CcEEEEEeCCHHHHHHHHHHhCCCcccCccceeE
Q 020783 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSY 180 (321)
Q Consensus 105 ~~~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 180 (321)
......+|||+|||..+++++|+++|.+||.|..+.+..++. .+||||+|.+.++|+.|++.||+..+.| ..
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~ 83 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDG----RQ 83 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTS----CC
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECC----eE
Confidence 345667999999999999999999999999999999988753 4699999999999999999999999999 66
Q ss_pred EEEEecCCC
Q 020783 181 VRVREYDSR 189 (321)
Q Consensus 181 i~v~~~~~~ 189 (321)
|.|......
T Consensus 84 l~v~~a~~~ 92 (102)
T 1x5s_A 84 IRVDQAGKS 92 (102)
T ss_dssp CEEEEEECC
T ss_pred EEEEECCCC
Confidence 777766544
No 225
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.55 E-value=2.5e-13 Score=104.07 Aligned_cols=82 Identities=17% Similarity=0.240 Sum_probs=73.4
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCC----CcEEEEEeCCHHHHHHHHHHhCCCcccCccceeE
Q 020783 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSY 180 (321)
Q Consensus 105 ~~~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 180 (321)
......+|||+|||..+++++|+++|.+||.|..+.+..+.. .+||||+|.+.++|+.|++.||+..+.| ..
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~ 86 (115)
T 2dgo_A 11 DTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGG----RQ 86 (115)
T ss_dssp CSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETT----EE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC----EE
Confidence 345678999999999999999999999999999999998854 2699999999999999999999999999 88
Q ss_pred EEEEecCCCC
Q 020783 181 VRVREYDSRR 190 (321)
Q Consensus 181 i~v~~~~~~r 190 (321)
|.|.......
T Consensus 87 l~V~~a~~~~ 96 (115)
T 2dgo_A 87 IRTNWATRKP 96 (115)
T ss_dssp CEEEESSCCC
T ss_pred EEEEEccCCC
Confidence 8888876553
No 226
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=2.7e-14 Score=107.01 Aligned_cols=78 Identities=6% Similarity=0.075 Sum_probs=68.3
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCCCcEEEEEeCCHHHHHHHHHHhCC--CcccCccceeEEEE
Q 020783 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDR--SEFRNAFSRSYVRV 183 (321)
Q Consensus 106 ~~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~afV~f~~~~~a~~A~~~l~g--~~~~g~~~~~~i~v 183 (321)
..+..+|||+|||.++++++|+++|.+||.|..+.+..+ +|||||+|.+.++|+.|++.|++ ..+.| +.|.|
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~--kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~G----r~l~V 86 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMNTEEAANTMVNYYTSVTPVLRG----QPIYI 86 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHTTSCCEETT----EECCB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCEEEEEECCHHHHHHHHHHhccCCceECC----EEEEE
Confidence 345679999999999999999999999999999999876 57999999999999999998864 78888 77877
Q ss_pred EecCCC
Q 020783 184 REYDSR 189 (321)
Q Consensus 184 ~~~~~~ 189 (321)
......
T Consensus 87 ~~A~~~ 92 (105)
T 1sjq_A 87 QFSNHK 92 (105)
T ss_dssp CCCSSS
T ss_pred EEcCCC
Confidence 776544
No 227
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=6.3e-14 Score=105.25 Aligned_cols=82 Identities=15% Similarity=0.184 Sum_probs=73.4
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCCC----cEEEEEeCCHHHHHHHHHHhCCCcccCccceeE
Q 020783 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSY 180 (321)
Q Consensus 105 ~~~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~----g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 180 (321)
......+|||+|||..+++++|+++|.+||.|..+.+..++.. +||||+|.+.++|++|++.||+..+.| ..
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~ 86 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDH----LI 86 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETT----EE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCC----cE
Confidence 3456789999999999999999999999999999999988543 599999999999999999999999999 88
Q ss_pred EEEEecCCCC
Q 020783 181 VRVREYDSRR 190 (321)
Q Consensus 181 i~v~~~~~~r 190 (321)
|.|.......
T Consensus 87 l~v~~a~~~~ 96 (103)
T 2cq0_A 87 LNVEWAKPST 96 (103)
T ss_dssp CEEEESSCCC
T ss_pred EEEEECCCCC
Confidence 8888876653
No 228
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=7.3e-14 Score=103.59 Aligned_cols=80 Identities=16% Similarity=0.192 Sum_probs=72.1
Q ss_pred CCCCcEEEEeCCCCCCCHHHHH----HHHHhcCCcEEEEEEEcCC-CcEEEEEeCCHHHHHHHHHHhCCCcccCccceeE
Q 020783 106 RRSDYRVLVTGLPSSASWQDLK----DHMRRAGDVCFSQVFRDRG-GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSY 180 (321)
Q Consensus 106 ~~~~~~i~V~nl~~~~t~~~l~----~~f~~~G~i~~~~i~~~~~-~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 180 (321)
.....+|||+|||..+++++|+ ++|.+||+|..+.+..+.. .+||||+|.+.++|++|++.|||..+.| +.
T Consensus 6 ~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~g----r~ 81 (96)
T 2dgx_A 6 SGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGS----KK 81 (96)
T ss_dssp CSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETT----EE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECC----eE
Confidence 3456799999999999999999 9999999999999997654 5799999999999999999999999999 88
Q ss_pred EEEEecCCC
Q 020783 181 VRVREYDSR 189 (321)
Q Consensus 181 i~v~~~~~~ 189 (321)
|+|......
T Consensus 82 l~V~~a~~~ 90 (96)
T 2dgx_A 82 ILVSLATGA 90 (96)
T ss_dssp EEEEECCCS
T ss_pred EEEEEcCCC
Confidence 998887554
No 229
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=7.1e-14 Score=103.81 Aligned_cols=80 Identities=20% Similarity=0.205 Sum_probs=71.1
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCCCcEEEEEeCCHHHHHHHHHHhCCCcccCccceeEEEEE
Q 020783 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVR 184 (321)
Q Consensus 105 ~~~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~i~v~ 184 (321)
......+|||+|||..+++++|+++|.+||.|. +.+..+...+||||+|.+.++|+.|++.||+..+.| ..|.|.
T Consensus 15 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~V~ 89 (97)
T 2e5j_A 15 GAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGT----DTLRVA 89 (97)
T ss_dssp SSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSS----SCCEEE
T ss_pred CCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECC----cEEEEE
Confidence 345577999999999999999999999999997 777777778899999999999999999999999999 778787
Q ss_pred ecCCC
Q 020783 185 EYDSR 189 (321)
Q Consensus 185 ~~~~~ 189 (321)
.....
T Consensus 90 ~a~~~ 94 (97)
T 2e5j_A 90 LARQQ 94 (97)
T ss_dssp ECCCC
T ss_pred EcCCC
Confidence 76554
No 230
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.54 E-value=4.1e-14 Score=102.93 Aligned_cols=77 Identities=10% Similarity=0.180 Sum_probs=69.7
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcC-----CCcEEEEEeCCHHHHHHHHHHhCCCcccCccceeEEEE
Q 020783 109 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDR-----GGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 183 (321)
Q Consensus 109 ~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~i~v 183 (321)
..+|||+|||.++++++|+++|.+||.|..+.+..+. ..|||||+|.+.++|+.|++.|||..+.| ..|.+
T Consensus 4 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~v 79 (88)
T 4a8x_A 4 PTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDG----QEITA 79 (88)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETT----EECEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECC----eEEEE
Confidence 4689999999999999999999999999999998876 45799999999999999999999999999 77888
Q ss_pred EecCCC
Q 020783 184 REYDSR 189 (321)
Q Consensus 184 ~~~~~~ 189 (321)
......
T Consensus 80 ~~a~~~ 85 (88)
T 4a8x_A 80 TAVLAP 85 (88)
T ss_dssp EEECCC
T ss_pred EECCCC
Confidence 776543
No 231
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.54 E-value=1.4e-13 Score=103.45 Aligned_cols=77 Identities=9% Similarity=0.160 Sum_probs=69.4
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCCCcEEEEEeCCHHHHHHHHHHhCCCcccCccceeEEEEEe
Q 020783 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 185 (321)
Q Consensus 106 ~~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~i~v~~ 185 (321)
..+..+|||+|||.++++++|+++|.+||.|..+.+..+ ||||+|.+.++|++|++.||+..+.| ..|.|..
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~----~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~v~~ 79 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKD----YAFIHFDERDGAVKAMEEMNGKDLEG----ENIEIVF 79 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECSS----CEEEEESSHHHHHHHHHHHTTEEETT----EEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC----EEEEEeCCHHHHHHHHHHHCCCccCC----CEEEEEE
Confidence 345679999999999999999999999999999998844 99999999999999999999999999 8888888
Q ss_pred cCCCC
Q 020783 186 YDSRR 190 (321)
Q Consensus 186 ~~~~r 190 (321)
.....
T Consensus 80 a~~~~ 84 (103)
T 2dgu_A 80 AKPPD 84 (103)
T ss_dssp CCCCC
T ss_pred cCCCc
Confidence 76553
No 232
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=1.4e-13 Score=102.81 Aligned_cols=80 Identities=20% Similarity=0.343 Sum_probs=72.1
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCCC---cEEEEEeCCHHHHHHHHHHhCCCcccCccceeEEE
Q 020783 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG---MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 182 (321)
Q Consensus 106 ~~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~---g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~i~ 182 (321)
.....+|||+|||..+++++|+++|.+||.|..+.+..+..+ +||||+|.+.++|++|++.||+..+.| ..|.
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~ 89 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKE----NIIK 89 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSS----CEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECC----EEEE
Confidence 345678999999999999999999999999999999987632 699999999999999999999999999 7888
Q ss_pred EEecCCC
Q 020783 183 VREYDSR 189 (321)
Q Consensus 183 v~~~~~~ 189 (321)
|......
T Consensus 90 v~~a~~~ 96 (100)
T 2do4_A 90 VAISNSG 96 (100)
T ss_dssp EEECCCC
T ss_pred EEECCCC
Confidence 8877654
No 233
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=5.2e-14 Score=105.46 Aligned_cols=81 Identities=21% Similarity=0.196 Sum_probs=72.6
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCC----CcEEEEEeCCHHHHHHHHHHhCCCcccCccceeEE
Q 020783 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 181 (321)
Q Consensus 106 ~~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~i 181 (321)
..+..+|||+|||..+++++|+++|.+||.|..+.+..+.. .+||||+|.+.++|+.|++.||+..+.| ..|
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l 84 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFG----RTI 84 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETT----EEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC----cEE
Confidence 34667999999999999999999999999999999987643 4699999999999999999999999999 889
Q ss_pred EEEecCCCC
Q 020783 182 RVREYDSRR 190 (321)
Q Consensus 182 ~v~~~~~~r 190 (321)
.|.......
T Consensus 85 ~V~~a~~~~ 93 (102)
T 2cqb_A 85 RVNLAKPMR 93 (102)
T ss_dssp EEEECCCCC
T ss_pred EEEeCCCCC
Confidence 888876653
No 234
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.53 E-value=9.1e-14 Score=104.89 Aligned_cols=81 Identities=19% Similarity=0.251 Sum_probs=71.1
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCC----CcEEEEEeCCHHHHHHHHHHhCCCcc---cCccc
Q 020783 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEF---RNAFS 177 (321)
Q Consensus 105 ~~~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~----~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~~ 177 (321)
......+|||+|||..+++++|+++|.+||.|..+.+..++. .+||||+|.+.++|++|++.||+..+ .|
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g--- 85 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMN--- 85 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCS---
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCC---
Confidence 345678999999999999999999999999999999988653 47999999999999999999999987 77
Q ss_pred eeEEEEEecCCC
Q 020783 178 RSYVRVREYDSR 189 (321)
Q Consensus 178 ~~~i~v~~~~~~ 189 (321)
..|.|......
T Consensus 86 -~~l~v~~a~~~ 96 (106)
T 2dgp_A 86 -RPIQVKPADSE 96 (106)
T ss_dssp -SCCEEEECCCC
T ss_pred -ceEEEEECCcc
Confidence 67777776554
No 235
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=9.6e-14 Score=104.56 Aligned_cols=82 Identities=28% Similarity=0.345 Sum_probs=72.7
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCC----CcEEEEEeCCHHHHHHHHHHhCCCcccCcccee
Q 020783 104 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRS 179 (321)
Q Consensus 104 ~~~~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~ 179 (321)
.......+|||+|||..+++++|+++|.+||.|..+.+..+.. .|||||+|.+.++|++|++.||+..+.| .
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~ 85 (105)
T 1x5u_A 10 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYG----K 85 (105)
T ss_dssp CCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSS----C
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECC----e
Confidence 3445678999999999999999999999999999999988753 3699999999999999999999999999 7
Q ss_pred EEEEEecCCC
Q 020783 180 YVRVREYDSR 189 (321)
Q Consensus 180 ~i~v~~~~~~ 189 (321)
.|.|......
T Consensus 86 ~l~v~~a~~~ 95 (105)
T 1x5u_A 86 PIRVNKASAH 95 (105)
T ss_dssp BCEEEETTTT
T ss_pred EEEEEECCCC
Confidence 7888876554
No 236
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.53 E-value=2.1e-14 Score=129.90 Aligned_cols=77 Identities=17% Similarity=0.250 Sum_probs=68.1
Q ss_pred CCCCCCeEEEcC--CCCCCCHHHHHHHHhccCCeeEEEEccCCCCCcEEEEEEcCHHHHHHHHHhcCCcccC---Cc--e
Q 020783 2 SSRSSRTLYVGN--LPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFD---GY--R 74 (321)
Q Consensus 2 ~~~~~~~l~V~n--Lp~~~te~~L~~~F~~~G~I~~v~l~~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~---g~--~ 74 (321)
++.|+++||||| |+..+|+++|+++|++||+|..|.+.. ++|||||+|.+.++|++|++.|||..+. |+ .
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~---~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ 90 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP---NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKIT 90 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT---TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEE
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC---CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceE
Confidence 468999999999 588999999999999999999988863 5899999999999999999999999883 45 5
Q ss_pred EEEEEcc
Q 020783 75 LRVELAH 81 (321)
Q Consensus 75 i~V~~a~ 81 (321)
|.|.++.
T Consensus 91 ly~~~~~ 97 (345)
T 3tht_A 91 LYLNFVE 97 (345)
T ss_dssp CEEEECS
T ss_pred EEEEEee
Confidence 7777764
No 237
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=1.3e-13 Score=101.88 Aligned_cols=80 Identities=19% Similarity=0.225 Sum_probs=71.6
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCCC----cEEEEEeCCHHHHHHHHHHhCCCcccCcccee
Q 020783 104 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRS 179 (321)
Q Consensus 104 ~~~~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~----g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~ 179 (321)
....+..+|||+|||..+++++|+++|.+||.|..+.+..++.. +||||+|.+.++|++|++.||+..+.| .
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~ 85 (95)
T 2cqc_A 10 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDG----R 85 (95)
T ss_dssp CSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETT----E
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECC----E
Confidence 34456789999999999999999999999999999999987543 699999999999999999999999999 7
Q ss_pred EEEEEecC
Q 020783 180 YVRVREYD 187 (321)
Q Consensus 180 ~i~v~~~~ 187 (321)
.|.|....
T Consensus 86 ~l~v~~a~ 93 (95)
T 2cqc_A 86 RIRVSGPS 93 (95)
T ss_dssp EEEEECCS
T ss_pred EEEEEecC
Confidence 88887654
No 238
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.53 E-value=1.1e-13 Score=104.62 Aligned_cols=82 Identities=17% Similarity=0.276 Sum_probs=72.1
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcC-----CCcEEEEEeCCHHHHHHHHHHh-CCCcccCccce
Q 020783 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDR-----GGMTGIVDYTSYDDMKYAIRKL-DRSEFRNAFSR 178 (321)
Q Consensus 105 ~~~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~-----~~g~afV~f~~~~~a~~A~~~l-~g~~~~g~~~~ 178 (321)
......+|||+|||..+++++|+++|.+||.|..+.+..+. ..+||||+|.+.++|+.|++.| |+..+.|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g---- 86 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYG---- 86 (107)
T ss_dssp CSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSS----
T ss_pred cCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECC----
Confidence 34567899999999999999999999999999999998772 2469999999999999999999 9999999
Q ss_pred eEEEEEecCCCC
Q 020783 179 SYVRVREYDSRR 190 (321)
Q Consensus 179 ~~i~v~~~~~~r 190 (321)
..|.|.......
T Consensus 87 ~~l~v~~a~~~~ 98 (107)
T 2cph_A 87 RRLVLEWADSEV 98 (107)
T ss_dssp CBCEEEECCCCC
T ss_pred CEEEEEeCCCCC
Confidence 778887776553
No 239
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=8.2e-14 Score=104.81 Aligned_cols=81 Identities=17% Similarity=0.346 Sum_probs=71.6
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCC-----CcEEEEEeCCHHHHHHHHHHhCCCcccCccce
Q 020783 104 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG-----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSR 178 (321)
Q Consensus 104 ~~~~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~-----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~ 178 (321)
.+..+..+|||+|||.++++++|+++|.+|| |..+.+..+.. .|||||+|.+.++|++|+ .||+..+.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g---- 83 (104)
T 1wi8_A 10 LPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGN---- 83 (104)
T ss_dssp CCSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETT----
T ss_pred CCCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCC----
Confidence 3445678999999999999999999999999 99999998754 469999999999999999 999999999
Q ss_pred eEEEEEecCCCC
Q 020783 179 SYVRVREYDSRR 190 (321)
Q Consensus 179 ~~i~v~~~~~~r 190 (321)
..|.|.......
T Consensus 84 ~~l~V~~a~~~~ 95 (104)
T 1wi8_A 84 KRIRVDVADQAQ 95 (104)
T ss_dssp EECEEEECCCCC
T ss_pred cEEEEEEccCCC
Confidence 888888876653
No 240
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=9.7e-14 Score=101.57 Aligned_cols=76 Identities=21% Similarity=0.332 Sum_probs=69.3
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCCCcEEEEEeCCHHHHHHHHHHhCCCcccCccceeEEEEEe
Q 020783 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 185 (321)
Q Consensus 106 ~~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~i~v~~ 185 (321)
.....+|||+|||.++++++|+++|.+||.|..+.+..+ ||||+|.+.++|+.|++.||+..+.| ..|.|..
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~----~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~v~~ 77 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD----YAFVHMEKEADAKAAIAQLNGKEVKG----KRINVEL 77 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSS----CEEEEESCHHHHHHHHHHHTTCEETT----EECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECC----EEEEEECCHHHHHHHHHHhCCCEECC----cEEEEEE
Confidence 345679999999999999999999999999999999855 99999999999999999999999999 8888888
Q ss_pred cCCC
Q 020783 186 YDSR 189 (321)
Q Consensus 186 ~~~~ 189 (321)
....
T Consensus 78 a~~~ 81 (90)
T 2dnp_A 78 STKG 81 (90)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 7655
No 241
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.53 E-value=7.9e-14 Score=103.67 Aligned_cols=78 Identities=15% Similarity=0.248 Sum_probs=70.4
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCC-------CcEEEEEeCCHHHHHHHHHHhCCCcccCccceeE
Q 020783 108 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG-------GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSY 180 (321)
Q Consensus 108 ~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~-------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 180 (321)
+..+|||+|||.++++++|+++|.+||+|..+.+..+.. .+||||+|.+.++|+.|++.||+..+.| ..
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~ 79 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDG----HK 79 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETT----EE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCC----eE
Confidence 456899999999999999999999999999999997654 3699999999999999999999999999 78
Q ss_pred EEEEecCCC
Q 020783 181 VRVREYDSR 189 (321)
Q Consensus 181 i~v~~~~~~ 189 (321)
|.|......
T Consensus 80 l~V~~a~~~ 88 (98)
T 2cpf_A 80 LEVRISERA 88 (98)
T ss_dssp CEEECSSCS
T ss_pred EEEEEccCC
Confidence 888887654
No 242
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=6.6e-14 Score=103.24 Aligned_cols=81 Identities=17% Similarity=0.237 Sum_probs=71.3
Q ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCC----CcEEEEEeCCHHHHHHHHHHhCCCcccCccc
Q 020783 102 RGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFS 177 (321)
Q Consensus 102 ~~~~~~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~ 177 (321)
.....+...+|||+|||..+++++|+++|.+||+|..+.+..++. .+||||+|.+.++|++|++.||+..+.|
T Consensus 9 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g--- 85 (94)
T 2e5h_A 9 SGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFG--- 85 (94)
T ss_dssp CCSCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETT---
T ss_pred CCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCC---
Confidence 334456678999999999999999999999999999999988754 4699999999999999999999999999
Q ss_pred eeEEEEEec
Q 020783 178 RSYVRVREY 186 (321)
Q Consensus 178 ~~~i~v~~~ 186 (321)
..|.|...
T Consensus 86 -~~l~v~~a 93 (94)
T 2e5h_A 86 -RVIKASIA 93 (94)
T ss_dssp -EEEEEEEC
T ss_pred -cEEEEEec
Confidence 77877654
No 243
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.52 E-value=1.4e-13 Score=104.75 Aligned_cols=81 Identities=10% Similarity=0.158 Sum_probs=72.4
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCC----CcEEEEEeCCHHHHHHHHHHhC------CCcccC
Q 020783 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLD------RSEFRN 174 (321)
Q Consensus 105 ~~~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~----~g~afV~f~~~~~a~~A~~~l~------g~~~~g 174 (321)
......+|||+|||..+++++|+++|.+||.|..|.+..+.. .+||||+|.+.++|+.|++.|| +..+.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g 90 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDG 90 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSS
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcC
Confidence 345677999999999999999999999999999999997743 4699999999999999999999 999999
Q ss_pred ccceeEEEEEecCCC
Q 020783 175 AFSRSYVRVREYDSR 189 (321)
Q Consensus 175 ~~~~~~i~v~~~~~~ 189 (321)
..|.|......
T Consensus 91 ----~~l~v~~a~~~ 101 (111)
T 1x4h_A 91 ----RQLKVDLAVTR 101 (111)
T ss_dssp ----CEEEEECCCCC
T ss_pred ----EEEEEEECCCC
Confidence 78888877654
No 244
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.52 E-value=9.3e-14 Score=102.62 Aligned_cols=79 Identities=22% Similarity=0.283 Sum_probs=70.8
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCCC---cEEEEEeCCHHHHHHHHHHhCCCcccCccceeEE
Q 020783 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG---MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 181 (321)
Q Consensus 105 ~~~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~---g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~i 181 (321)
......+|||+|||..+++++|+++|.+||+|..+.+..+..+ +||||+|.+.++|++|++.||+..+.| ..|
T Consensus 12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l 87 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYG----RPI 87 (95)
T ss_dssp CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETT----EEC
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECC----CEE
Confidence 3456789999999999999999999999999999999988653 699999999999999999999999999 777
Q ss_pred EEEecC
Q 020783 182 RVREYD 187 (321)
Q Consensus 182 ~v~~~~ 187 (321)
.|....
T Consensus 88 ~V~~a~ 93 (95)
T 2ywk_A 88 NVSGPS 93 (95)
T ss_dssp EEECCC
T ss_pred EEEEcC
Confidence 776653
No 245
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.52 E-value=1.1e-13 Score=104.54 Aligned_cols=81 Identities=19% Similarity=0.231 Sum_probs=70.8
Q ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCCC---cEEEEEeCCHHHHHHHHHHhCCCcccCccce
Q 020783 102 RGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG---MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSR 178 (321)
Q Consensus 102 ~~~~~~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~---g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~ 178 (321)
.++...+..+|||+|||..+++++|+++|.+||.|..+.+..+..+ +||||+|.+.++|++|++.||+..+.|
T Consensus 22 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g---- 97 (107)
T 3ulh_A 22 GGAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDG---- 97 (107)
T ss_dssp --CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETT----
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCC----
Confidence 3445567889999999999999999999999999999999988633 599999999999999999999999999
Q ss_pred eEEEEEec
Q 020783 179 SYVRVREY 186 (321)
Q Consensus 179 ~~i~v~~~ 186 (321)
..|.|...
T Consensus 98 ~~l~V~~a 105 (107)
T 3ulh_A 98 RPMNIQLV 105 (107)
T ss_dssp EECEEEEE
T ss_pred cEEEEEEe
Confidence 67776654
No 246
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.52 E-value=1.1e-13 Score=100.45 Aligned_cols=78 Identities=17% Similarity=0.201 Sum_probs=68.4
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCC----CcEEEEEeCCHHHHHHHHHHhCCCcccCccceeEEE
Q 020783 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 182 (321)
Q Consensus 107 ~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~i~ 182 (321)
.+..+|||+|||..+++++|+++|.+||.|..+.+..+.. .|||||+|.+.++|+.|++.||+..+.| ..|.
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l~ 79 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGG----RQIR 79 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETT----EECE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECC----eEEE
Confidence 4567999999999999999999999999999999998753 3699999999999999999999999999 7777
Q ss_pred EEecCC
Q 020783 183 VREYDS 188 (321)
Q Consensus 183 v~~~~~ 188 (321)
+.....
T Consensus 80 v~~a~~ 85 (87)
T 3bs9_A 80 TNWATR 85 (87)
T ss_dssp EEEEC-
T ss_pred EEecCC
Confidence 776543
No 247
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=1.4e-13 Score=104.46 Aligned_cols=78 Identities=14% Similarity=0.173 Sum_probs=71.2
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCCCcEEEEEeCCHHHHHHHHHHhCCCcccCccceeEEEEEec
Q 020783 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREY 186 (321)
Q Consensus 107 ~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~i~v~~~ 186 (321)
....+|||+|||..+++++|+++|.+||.|..+.+..+ .+||||+|.+.++|+.|+..||+..+.| ..|.|...
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~v~~a 96 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE--KGYSFVRFSTHESAAHAIVSVNGTTIEG----HVVKCYWG 96 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHTTCEETT----EECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC--CCEEEEEECCHHHHHHHHHHcCCCEECC----cEEEEEec
Confidence 45679999999999999999999999999999999877 5699999999999999999999999999 78888877
Q ss_pred CCCC
Q 020783 187 DSRR 190 (321)
Q Consensus 187 ~~~r 190 (321)
....
T Consensus 97 ~~~~ 100 (109)
T 1x4g_A 97 KESP 100 (109)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6653
No 248
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.52 E-value=1.8e-13 Score=104.90 Aligned_cols=80 Identities=21% Similarity=0.261 Sum_probs=72.1
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCCC----cEEEEEeCCHHHHHHHHHHhCCCcccCccceeEE
Q 020783 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 181 (321)
Q Consensus 106 ~~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~----g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~i 181 (321)
.....+|||+|||.++++++|+++|.+||.|..+.+..+... +||||+|.+.++|++|++.||+..+.| ..|
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l 97 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGM----KRL 97 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETT----EEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECC----EEE
Confidence 345679999999999999999999999999999999988643 599999999999999999999999999 888
Q ss_pred EEEecCCC
Q 020783 182 RVREYDSR 189 (321)
Q Consensus 182 ~v~~~~~~ 189 (321)
.|......
T Consensus 98 ~V~~a~~~ 105 (115)
T 2cpz_A 98 KVQLKRSK 105 (115)
T ss_dssp EEECCCCS
T ss_pred EEEEcCCC
Confidence 88877655
No 249
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.52 E-value=1.4e-13 Score=102.19 Aligned_cols=78 Identities=21% Similarity=0.229 Sum_probs=69.5
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCCCcEEEEEeCCHHHHHHHHHHhCCCccc--CccceeEEEE
Q 020783 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFR--NAFSRSYVRV 183 (321)
Q Consensus 106 ~~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~~~~~i~v 183 (321)
..+..+|||+|||..+++++|+++|.+||.|..+.+..+ .+||||+|.+.++|++|++.||+..+. | ..|.|
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~~~g----~~l~V 87 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG--DSFAYIQYESLDAAQAACAKMRGFPLGGPD----RRLRV 87 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS--SCCEEEEESSHHHHHHHHHHHTTCBCSSSS----CBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC--CCEEEEEECCHHHHHHHHHHHCCCEeCCCC----cEEEE
Confidence 345579999999999999999999999999999998865 569999999999999999999999999 7 67777
Q ss_pred EecCCC
Q 020783 184 REYDSR 189 (321)
Q Consensus 184 ~~~~~~ 189 (321)
......
T Consensus 88 ~~a~~~ 93 (97)
T 1why_A 88 DFAKSG 93 (97)
T ss_dssp EECCCC
T ss_pred EECCCC
Confidence 776554
No 250
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.51 E-value=1e-13 Score=100.20 Aligned_cols=76 Identities=21% Similarity=0.194 Sum_probs=68.0
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCC----CcEEEEEeCCHHHHHHHHHHhCCCcccCccceeEEE
Q 020783 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 182 (321)
Q Consensus 107 ~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~i~ 182 (321)
.+..+|||+|||..+++++|+++|.+||.|..+.+..+.. .+||||+|.+.++|+.|++.|||..+.| ..|.
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~ 80 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFG----RTIR 80 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETT----EECE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECC----cEEE
Confidence 4567999999999999999999999999999999987743 3699999999999999999999999999 7777
Q ss_pred EEec
Q 020783 183 VREY 186 (321)
Q Consensus 183 v~~~ 186 (321)
+...
T Consensus 81 v~~a 84 (85)
T 3mdf_A 81 VNLA 84 (85)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 7653
No 251
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.51 E-value=4.7e-14 Score=105.51 Aligned_cols=77 Identities=10% Similarity=0.078 Sum_probs=68.2
Q ss_pred CCCcEEEEeCCCC-CCCHHHHHHHHHhcCCcEEEEEEEcCCCcEEEEEeCCHHHHHHHHHHhCCC--cccCccceeEEEE
Q 020783 107 RSDYRVLVTGLPS-SASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRS--EFRNAFSRSYVRV 183 (321)
Q Consensus 107 ~~~~~i~V~nl~~-~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~afV~f~~~~~a~~A~~~l~g~--~~~g~~~~~~i~v 183 (321)
.+..+|||+|||. ++++++|+++|.+||.|..+.++.++ +||||+|++.++|+.|++.||+. .+.| +.|.|
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~k--g~aFVef~~~~~A~~Ai~~l~~~~~~~~G----r~l~V 86 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKI--NEAFIEMATTEDAQAAVDYYTTTPALVFG----KPVRV 86 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSS--SCEEEEESSHHHHHHHHHHHHHSCCEETT----EECEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCC--CEEEEEECCHHHHHHHHHHHcCCCceECC----cEEEE
Confidence 4567999999999 99999999999999999999998654 69999999999999999999865 4888 88888
Q ss_pred EecCCC
Q 020783 184 REYDSR 189 (321)
Q Consensus 184 ~~~~~~ 189 (321)
......
T Consensus 87 ~~a~~~ 92 (102)
T 1x4d_A 87 HLSQKY 92 (102)
T ss_dssp EEECCC
T ss_pred EECCCC
Confidence 877644
No 252
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.51 E-value=1.3e-13 Score=101.16 Aligned_cols=80 Identities=21% Similarity=0.392 Sum_probs=70.3
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCC--CcEEEEEeCCHHHHHHHHHHhCCCcccCccceeEEEE
Q 020783 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG--GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 183 (321)
Q Consensus 106 ~~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~--~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~i~v 183 (321)
.....+|||+|||..+++++|+++|.+||.|..+.+..+.. .+||||+|.+.++|+.|++.||+..+.| ..|.|
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g----~~l~v 80 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSG----REIDV 80 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTT----BCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECC----cEEEE
Confidence 34567999999999999999999999999999999987532 3699999999999999999999999999 66777
Q ss_pred EecCCC
Q 020783 184 REYDSR 189 (321)
Q Consensus 184 ~~~~~~ 189 (321)
......
T Consensus 81 ~~a~~~ 86 (92)
T 2dgv_A 81 RIDRNA 86 (92)
T ss_dssp EECSCC
T ss_pred EEcCCC
Confidence 766554
No 253
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.51 E-value=8.4e-14 Score=104.15 Aligned_cols=75 Identities=23% Similarity=0.208 Sum_probs=68.9
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCCCcEEEEEeCCHHHHHHHHHHhCCCcccCccceeEEEEEecCCC
Q 020783 110 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDSR 189 (321)
Q Consensus 110 ~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~i~v~~~~~~ 189 (321)
++|||+|||.++++++|+++|.+||+|..+.+..+ ..+||||+|.+.++|+.|++.||+..+.| ..|.|......
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-PPGFAFVEFEDPRDAEDAVRGLDGKVICG----SRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-SSSEEEEECSSHHHHHHHHHHHHHSCSSS----CCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-CCCEEEEEECCHHHHHHHHHHHCCCeECC----cEEEEEEccCC
Confidence 37999999999999999999999999999999988 66799999999999999999999999999 77888776654
No 254
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.51 E-value=2.4e-13 Score=102.08 Aligned_cols=81 Identities=19% Similarity=0.299 Sum_probs=71.7
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCC----CcEEEEEeCCHHHHHHHHHHhCCCcccCcccee
Q 020783 104 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRS 179 (321)
Q Consensus 104 ~~~~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~ 179 (321)
.+..+..+|||+|||..+++++|+++|.+|| |..+.+..+.. .|||||+|.+.++|++|+ .||+..+.| .
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g----~ 83 (103)
T 2dng_A 10 LPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGD----R 83 (103)
T ss_dssp CCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETT----E
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECC----e
Confidence 3445678999999999999999999999997 99999998865 369999999999999999 999999999 8
Q ss_pred EEEEEecCCCC
Q 020783 180 YVRVREYDSRR 190 (321)
Q Consensus 180 ~i~v~~~~~~r 190 (321)
.|.|.......
T Consensus 84 ~l~V~~a~~~~ 94 (103)
T 2dng_A 84 SLRVDIAEGRK 94 (103)
T ss_dssp ECEEEECCCCC
T ss_pred EEEEEEecCCC
Confidence 88888876553
No 255
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.51 E-value=2.6e-13 Score=107.54 Aligned_cols=81 Identities=20% Similarity=0.208 Sum_probs=73.0
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCC----CcEEEEEeCCHHHHHHHHHHhCCCcccCccceeE
Q 020783 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSY 180 (321)
Q Consensus 105 ~~~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 180 (321)
......+|||+|||.++++++|+++|.+||+|..+.+..+.. .|||||+|.+.++|++|++.||+..+.| ..
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~ 113 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILN----KR 113 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSS----CE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC----eE
Confidence 345568999999999999999999999999999999998865 3699999999999999999999999999 78
Q ss_pred EEEEecCCC
Q 020783 181 VRVREYDSR 189 (321)
Q Consensus 181 i~v~~~~~~ 189 (321)
|.|......
T Consensus 114 l~v~~a~~~ 122 (139)
T 1u6f_A 114 LKVALAASG 122 (139)
T ss_dssp EEEEESSCC
T ss_pred EEEEECCCC
Confidence 888887655
No 256
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=9.5e-14 Score=102.78 Aligned_cols=79 Identities=15% Similarity=0.205 Sum_probs=70.6
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEE-EEEEcCC----CcEEEEEeCCHHHHHHHHHHhCCCcccCccceeEEE
Q 020783 108 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFS-QVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 182 (321)
Q Consensus 108 ~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~-~i~~~~~----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~i~ 182 (321)
+.++|||+|||..+++++|+++|.+||.|..+ .+..++. .+||||+|.+.++|++|++.||+..+.| ..|.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l~ 79 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCN----RPIT 79 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETT----EECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECC----EEEE
Confidence 45699999999999999999999999999999 8887743 4699999999999999999999999999 8888
Q ss_pred EEecCCCC
Q 020783 183 VREYDSRR 190 (321)
Q Consensus 183 v~~~~~~r 190 (321)
|.......
T Consensus 80 v~~a~~~~ 87 (96)
T 1x5t_A 80 VSYAFKKD 87 (96)
T ss_dssp EEESCCCC
T ss_pred EEEecccC
Confidence 88876553
No 257
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=1.6e-13 Score=102.22 Aligned_cols=76 Identities=24% Similarity=0.364 Sum_probs=64.9
Q ss_pred CCeEEEcCCC-------CCCCHHHHHHHHhccCCeeEEEEccCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEE
Q 020783 6 SRTLYVGNLP-------GDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVE 78 (321)
Q Consensus 6 ~~~l~V~nLp-------~~~te~~L~~~F~~~G~I~~v~l~~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~ 78 (321)
.++|.|.-.. .++|+++|+++|++||+|.+|.|+ +.++|||||+|.+.++|++|++.+++ +.|+.|.|.
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~--~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~ 85 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS--SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKIS 85 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE--SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEE
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc--cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEE
Confidence 4566666554 468999999999999999999997 57799999999999999999997655 679999999
Q ss_pred EccCCCC
Q 020783 79 LAHGGRR 85 (321)
Q Consensus 79 ~a~~~~~ 85 (321)
|+.....
T Consensus 86 ~a~~~~~ 92 (100)
T 2d9o_A 86 WLEGQPQ 92 (100)
T ss_dssp CSSCCCC
T ss_pred EccCCCC
Confidence 9886653
No 258
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.50 E-value=1.2e-13 Score=102.34 Aligned_cols=77 Identities=12% Similarity=0.212 Sum_probs=70.1
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCC----CcEEEEEeCCHHHHHHHHHHhCCCcccCccceeEEEEE
Q 020783 109 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVR 184 (321)
Q Consensus 109 ~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~i~v~ 184 (321)
..+|||+|||..+++++|+++|.+||.|..+.+..+.. .|||||+|.+.++|+.|++.|||..+.| ..|.+.
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g----~~l~V~ 77 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGS----RFLKCG 77 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETT----EECEEE
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECC----eEEEEE
Confidence 46899999999999999999999999999999998754 4799999999999999999999999999 888888
Q ss_pred ecCCC
Q 020783 185 EYDSR 189 (321)
Q Consensus 185 ~~~~~ 189 (321)
.....
T Consensus 78 ~a~~~ 82 (96)
T 2x1f_A 78 YSSNS 82 (96)
T ss_dssp ECSCS
T ss_pred EcCCC
Confidence 76654
No 259
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.50 E-value=6.3e-15 Score=110.98 Aligned_cols=70 Identities=21% Similarity=0.367 Sum_probs=60.7
Q ss_pred EcCCCCCCCHHHHHHHH------------hccCCeeEEEEcc--CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEE
Q 020783 11 VGNLPGDTRMREVEDLF------------YKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLR 76 (321)
Q Consensus 11 V~nLp~~~te~~L~~~F------------~~~G~I~~v~l~~--~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~ 76 (321)
+.|||+++|+++|.++| ++||+|.+|.|+. +++++|||||+|.+.++|++|+..|||..++|+.|.
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 45566667777777666 9999999999964 357899999999999999999999999999999999
Q ss_pred EEEc
Q 020783 77 VELA 80 (321)
Q Consensus 77 V~~a 80 (321)
|.++
T Consensus 100 v~~s 103 (104)
T 1jmt_A 100 AELS 103 (104)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9986
No 260
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.50 E-value=1.9e-13 Score=103.98 Aligned_cols=75 Identities=13% Similarity=0.151 Sum_probs=67.8
Q ss_pred CCCcEEEEeCCCCC-CCHHHHHHHHHhcCCcEEEEEEEcCCCcEEEEEeCCHHHHHHHHHHhCCCcccCccceeEEEEEe
Q 020783 107 RSDYRVLVTGLPSS-ASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 185 (321)
Q Consensus 107 ~~~~~i~V~nl~~~-~t~~~l~~~f~~~G~i~~~~i~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~i~v~~ 185 (321)
....+|||+|||.. +++++|+++|.+||.|..+.+ ..+||||+|.+.++|+.|++.||+..+.| ..|.|..
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i----~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l~V~~ 96 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV----HKGYAFVQYSNERHARAAVLGENGRVLAG----QTLDINM 96 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE----ETTEEEEECSSSHHHHHHHHHHTTCEETT----EECCEEE
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE----eCCEEEEEECCHHHHHHHHHHcCCCEECC----eEEEEEE
Confidence 34579999999999 999999999999999999999 35699999999999999999999999999 7888887
Q ss_pred cCCC
Q 020783 186 YDSR 189 (321)
Q Consensus 186 ~~~~ 189 (321)
....
T Consensus 97 a~~~ 100 (110)
T 1wf1_A 97 AGEP 100 (110)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 6544
No 261
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=2.3e-13 Score=102.29 Aligned_cols=80 Identities=18% Similarity=0.174 Sum_probs=70.1
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHh-cCCcEEEEEEEcCCC---cEEEEEeCCHHHHHHHHHHhCCCc-ccCccceeE
Q 020783 106 RRSDYRVLVTGLPSSASWQDLKDHMRR-AGDVCFSQVFRDRGG---MTGIVDYTSYDDMKYAIRKLDRSE-FRNAFSRSY 180 (321)
Q Consensus 106 ~~~~~~i~V~nl~~~~t~~~l~~~f~~-~G~i~~~~i~~~~~~---g~afV~f~~~~~a~~A~~~l~g~~-~~g~~~~~~ 180 (321)
..+..+|||+|||.++++++|+++|.+ ||.|..+.+..+..+ +||||+|.+.++|+.|++.||+.. +.| ..
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g----~~ 81 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGS----KP 81 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSS----SC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCC----Ee
Confidence 345679999999999999999999999 999999999988632 599999999999999999999999 999 66
Q ss_pred EEEEecCCC
Q 020783 181 VRVREYDSR 189 (321)
Q Consensus 181 i~v~~~~~~ 189 (321)
|.+......
T Consensus 82 l~v~~a~~~ 90 (104)
T 2dhg_A 82 VRLSVAIPK 90 (104)
T ss_dssp CCCCBCCCC
T ss_pred EEEEEccCC
Confidence 777665443
No 262
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.50 E-value=2.3e-13 Score=97.77 Aligned_cols=76 Identities=17% Similarity=0.242 Sum_probs=68.8
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCC----CcEEEEEeCCHHHHHHHHHHhCCCcccCccceeEEEEEe
Q 020783 110 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 185 (321)
Q Consensus 110 ~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~i~v~~ 185 (321)
.+|||+|||.++++++|+++|.+||.|..+.+..++. .|||||+|.+.++|+.|++.|||..+.| ..|.+..
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g----~~l~v~~ 77 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNG----RPLRINW 77 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETT----EECEEEE
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCC----cEEEEEe
Confidence 5899999999999999999999999999999998854 3699999999999999999999999999 7788877
Q ss_pred cCCC
Q 020783 186 YDSR 189 (321)
Q Consensus 186 ~~~~ 189 (321)
....
T Consensus 78 a~~~ 81 (83)
T 3md1_A 78 AAKL 81 (83)
T ss_dssp CCCC
T ss_pred cCcC
Confidence 6543
No 263
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.50 E-value=1.6e-13 Score=101.79 Aligned_cols=76 Identities=14% Similarity=0.149 Sum_probs=67.4
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCCCcEEEEEeCCHHHHHHHHHHhCCCc--ccCccceeEEEEE
Q 020783 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSE--FRNAFSRSYVRVR 184 (321)
Q Consensus 107 ~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~afV~f~~~~~a~~A~~~l~g~~--~~g~~~~~~i~v~ 184 (321)
+++.+|||+|||.++++++|.++|.+||.|..+.+... +|+|||+|++.++|..|++.|++.. +.| +.|.|.
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~--kg~AFVef~~~~~A~~Av~~ln~~~~~i~G----r~i~V~ 92 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK--KRQALVEFEDVLGACNAVNYAADNQIYIAG----HPAFVN 92 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHHHSCEEETT----EEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC--CCEEEEEECCHHHHHHHHHHhcCCCceeCC----cEEEEE
Confidence 45679999999999999999999999999999998753 5699999999999999999999886 678 788887
Q ss_pred ecCC
Q 020783 185 EYDS 188 (321)
Q Consensus 185 ~~~~ 188 (321)
....
T Consensus 93 ~S~~ 96 (100)
T 3r27_A 93 YSTS 96 (100)
T ss_dssp ECSC
T ss_pred eccc
Confidence 7654
No 264
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=2.6e-13 Score=101.40 Aligned_cols=78 Identities=8% Similarity=0.086 Sum_probs=68.3
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCCCcEEEEEeCCHHHHHHHHHHh--CCCcccCccceeEEEE
Q 020783 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKL--DRSEFRNAFSRSYVRV 183 (321)
Q Consensus 106 ~~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~~~~~i~v 183 (321)
..+..+|||+|||..+++++|+++|.+||.|..+.+..+ .|||||+|.+.++|+.|++.| ++..+.| +.|.|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~--kg~aFVef~~~~~A~~Ai~~l~~~~~~~~G----r~l~V 85 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG--KNQAFLELATEEAAITMVNYYSAVTPHLRN----QPIYI 85 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHHHSCCEETT----EECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC--CCEEEEEECCHHHHHHHHHHhccCCceECC----cEEEE
Confidence 345679999999999999999999999999999988765 679999999999999999977 4677888 78888
Q ss_pred EecCCC
Q 020783 184 REYDSR 189 (321)
Q Consensus 184 ~~~~~~ 189 (321)
......
T Consensus 86 ~~a~~~ 91 (101)
T 2cq1_A 86 QYSNHK 91 (101)
T ss_dssp EECSCS
T ss_pred EEcCcc
Confidence 876554
No 265
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=1.6e-13 Score=103.55 Aligned_cols=79 Identities=19% Similarity=0.288 Sum_probs=70.1
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCC----CcEEEEEeCCHHHHHHHHHHhCCCcccCccceeEE
Q 020783 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 181 (321)
Q Consensus 106 ~~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~i 181 (321)
.....+|||+|||..+++++|+++|.+||.|..+.+..+.. .|||||+|.+.++|+.|+..|||..+.| ..|
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l 95 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMG----QPI 95 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSS----SBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECC----cEE
Confidence 34568999999999999999999999999999999998865 3699999999999999999999999999 667
Q ss_pred EEEecCC
Q 020783 182 RVREYDS 188 (321)
Q Consensus 182 ~v~~~~~ 188 (321)
.|.....
T Consensus 96 ~V~~a~~ 102 (106)
T 1p27_B 96 SVDWCFV 102 (106)
T ss_dssp EEEESEE
T ss_pred EEEeecC
Confidence 6666543
No 266
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.49 E-value=2.2e-13 Score=101.44 Aligned_cols=78 Identities=18% Similarity=0.215 Sum_probs=70.2
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCCCcEEEEEeCCHHHHHHHHHHhCCCcccCccceeEEEEEe
Q 020783 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 185 (321)
Q Consensus 106 ~~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~i~v~~ 185 (321)
.....+|||+|||..+++++|+++|.+||+|..+.+..+ .+||||+|.+.++|++|++.||+..+.| ..|.|..
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~--kg~afV~f~~~~~a~~a~~~l~g~~~~g----~~l~v~~ 85 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD--KGFGFIRLETRTLAEIAKVELDNMPLRG----KQLRVRF 85 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT--TTEEEEECSSSHHHHHHHHHHTTCCBTT----BCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC--CCEEEEEECCHHHHHHHHHHhCCCEeCC----ceEEEEE
Confidence 345679999999999999999999999999999998855 5699999999999999999999999999 7788877
Q ss_pred cCCC
Q 020783 186 YDSR 189 (321)
Q Consensus 186 ~~~~ 189 (321)
....
T Consensus 86 a~~~ 89 (99)
T 2cpj_A 86 ACHS 89 (99)
T ss_dssp SSCC
T ss_pred cCCC
Confidence 6654
No 267
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=3.1e-13 Score=100.59 Aligned_cols=83 Identities=8% Similarity=0.090 Sum_probs=72.2
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCcE-EEEEEEcCCC----cEEEEEeCCHHHHHHHHHHhCCCcccCccceeEE
Q 020783 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVC-FSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 181 (321)
Q Consensus 107 ~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~-~~~i~~~~~~----g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~i 181 (321)
....+|||+|||..+++++|+++|.+||.|. .+.+..++.. +||||+|.+.++|++|++.||+..+.|+.....|
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l 86 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRF 86 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeE
Confidence 4567999999999999999999999999999 9999988643 6999999999999999999999999995544447
Q ss_pred EEEecCCC
Q 020783 182 RVREYDSR 189 (321)
Q Consensus 182 ~v~~~~~~ 189 (321)
++......
T Consensus 87 ~v~~a~~~ 94 (99)
T 2div_A 87 KLNYATYS 94 (99)
T ss_dssp CEEETTCC
T ss_pred EEeecCCC
Confidence 77776554
No 268
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=1.8e-13 Score=101.30 Aligned_cols=81 Identities=22% Similarity=0.286 Sum_probs=71.6
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEE-EEEEcCCCcEEEEEeCCHHHHHHHHHHhCCCcccCccceeEEEE
Q 020783 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFS-QVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 183 (321)
Q Consensus 105 ~~~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~-~i~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~i~v 183 (321)
......+|||+|||..+++++|+++|.+||.|..+ .+..++..+.|||+|.+.++|+.|++.|||..+.| +.|.|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g----~~l~V 86 (96)
T 2e44_A 11 KRQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLEN----FTLKV 86 (96)
T ss_dssp CCCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSS----CBCEE
T ss_pred CCCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECC----cEEEE
Confidence 34456799999999999999999999999999999 58888877789999999999999999999999999 67777
Q ss_pred EecCCC
Q 020783 184 REYDSR 189 (321)
Q Consensus 184 ~~~~~~ 189 (321)
......
T Consensus 87 ~~a~~~ 92 (96)
T 2e44_A 87 AYIPDE 92 (96)
T ss_dssp EECCCC
T ss_pred EEcCcc
Confidence 765443
No 269
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.49 E-value=1.5e-13 Score=104.20 Aligned_cols=77 Identities=16% Similarity=0.196 Sum_probs=70.0
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCCCcEEEEEeCCHHHHHHHHHHhCCCcccCccceeEEEEEe
Q 020783 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 185 (321)
Q Consensus 106 ~~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~i~v~~ 185 (321)
.....+|||+|||.++++++|+++|.+||.|..+.+. .|||||+|.+.++|+.|++.|||..+.| ..|.|..
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~----kg~afV~f~~~~~A~~Ai~~l~g~~~~g----~~l~V~~ 99 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL----NGFAFVEFEEAESAAKAIEEVHGKSFAN----QPLEVVY 99 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE----TTEEEEECSSHHHHHHHHHHHTTCEETT----EECEEES
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE----CCEEEEEECCHHHHHHHHHHcCCCEECC----eEEEEEE
Confidence 3456799999999999999999999999999999998 5699999999999999999999999999 8888887
Q ss_pred cCCCC
Q 020783 186 YDSRR 190 (321)
Q Consensus 186 ~~~~r 190 (321)
.....
T Consensus 100 a~~~~ 104 (108)
T 2jvo_A 100 SKLPA 104 (108)
T ss_dssp CSCCC
T ss_pred ecCCC
Confidence 76553
No 270
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.49 E-value=1.4e-13 Score=104.85 Aligned_cols=79 Identities=13% Similarity=0.154 Sum_probs=71.3
Q ss_pred CCCcEEEEeCCCCCCCHHHHH---HHHHhcCCcEEEEEEEcCC-------CcEEEEEeCCHHHHHHHHHHhCCCcccCcc
Q 020783 107 RSDYRVLVTGLPSSASWQDLK---DHMRRAGDVCFSQVFRDRG-------GMTGIVDYTSYDDMKYAIRKLDRSEFRNAF 176 (321)
Q Consensus 107 ~~~~~i~V~nl~~~~t~~~l~---~~f~~~G~i~~~~i~~~~~-------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 176 (321)
....+|||+|||.++++++|. ++|.+||+|..+.+..+.. .|||||+|.+.++|++|++.||+..+.|
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g-- 90 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDG-- 90 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETT--
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECC--
Confidence 456799999999999999999 9999999999999987753 2699999999999999999999999999
Q ss_pred ceeEEEEEecCCC
Q 020783 177 SRSYVRVREYDSR 189 (321)
Q Consensus 177 ~~~~i~v~~~~~~ 189 (321)
+.|.|......
T Consensus 91 --r~l~V~~a~~k 101 (111)
T 2cpi_A 91 --RTLKASLGTTK 101 (111)
T ss_dssp --EEEEEESCCCC
T ss_pred --EEEEEEecccc
Confidence 88988887655
No 271
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.49 E-value=3e-13 Score=101.65 Aligned_cols=78 Identities=17% Similarity=0.191 Sum_probs=67.3
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCCCcEEEEEeCCHHHHHHHHHHhCCC--cccCccceeEEEE
Q 020783 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRS--EFRNAFSRSYVRV 183 (321)
Q Consensus 106 ~~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~afV~f~~~~~a~~A~~~l~g~--~~~g~~~~~~i~v 183 (321)
..+..+|||+|||.++++++|+++|.+||.|..+.+..+ ++||||+|.+.++|..|++.|++. .+.| +.|.+
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~--kg~aFVef~~~~~A~~Ai~~l~~~~~~i~G----r~l~V 85 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF--KRQALVEFENIDSAKECVTFAADVPVYIAG----QQAFF 85 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHHHSCCBSSS----SBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC--CCEEEEEECCHHHHHHHHHHhccCCceECC----EEEEE
Confidence 345679999999999999999999999999999988764 579999999999999999988764 4888 67777
Q ss_pred EecCCC
Q 020783 184 REYDSR 189 (321)
Q Consensus 184 ~~~~~~ 189 (321)
......
T Consensus 86 ~~a~~~ 91 (104)
T 1wex_A 86 NYSTSK 91 (104)
T ss_dssp EECSSS
T ss_pred EEccCc
Confidence 776544
No 272
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=2e-13 Score=104.81 Aligned_cols=78 Identities=6% Similarity=0.075 Sum_probs=68.7
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCCCcEEEEEeCCHHHHHHHHHHhCC--CcccCccceeEEEE
Q 020783 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDR--SEFRNAFSRSYVRV 183 (321)
Q Consensus 106 ~~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~afV~f~~~~~a~~A~~~l~g--~~~~g~~~~~~i~v 183 (321)
.++..+|||+|||.++++++|+++|.+||.|..+.+..+ .|||||+|++.++|++|++.|++ ..+.| +.|.|
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~--kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~G----r~l~V 101 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMNTEEAANTMVNYYTSVTPVLRG----QPIYI 101 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG--GTEEEEECSCHHHHHHHHHHHHHHCCCBTT----BCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC--CCEEEEEECCHHHHHHHHHHhccCCceECC----eEEEE
Confidence 345679999999999999999999999999999999876 56999999999999999998874 67888 77888
Q ss_pred EecCCC
Q 020783 184 REYDSR 189 (321)
Q Consensus 184 ~~~~~~ 189 (321)
......
T Consensus 102 ~~a~~k 107 (119)
T 2ad9_A 102 QFSNHK 107 (119)
T ss_dssp EECSSS
T ss_pred EEccCC
Confidence 776544
No 273
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.48 E-value=1.4e-13 Score=107.82 Aligned_cols=81 Identities=19% Similarity=0.213 Sum_probs=71.7
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcC----CCcEEEEEeCCHHHHHHHHHHhCCCcccCccceeE
Q 020783 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDR----GGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSY 180 (321)
Q Consensus 105 ~~~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 180 (321)
...+..+|||+|||.++++++|+++|.+||+|..+.+..++ ..|||||+|.+.++|++|++.||+..+.| ..
T Consensus 42 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g----~~ 117 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDG----RR 117 (129)
T ss_dssp CCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSS----SC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECC----EE
Confidence 34567799999999999999999999999999999999774 34799999999999999999999999999 77
Q ss_pred EEEEecCCC
Q 020783 181 VRVREYDSR 189 (321)
Q Consensus 181 i~v~~~~~~ 189 (321)
|.|......
T Consensus 118 l~V~~a~~~ 126 (129)
T 2kxn_B 118 IRVDFSITK 126 (129)
T ss_dssp CEESCCSSS
T ss_pred EEEEEecCC
Confidence 777776554
No 274
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.48 E-value=3.1e-13 Score=100.70 Aligned_cols=79 Identities=20% Similarity=0.291 Sum_probs=69.8
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEE--------EEEEEcCC----CcEEEEEeCCHHHHHHHHHHhCCC
Q 020783 103 GVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCF--------SQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRS 170 (321)
Q Consensus 103 ~~~~~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~--------~~i~~~~~----~g~afV~f~~~~~a~~A~~~l~g~ 170 (321)
.++.....+|||+|||.++++++|+++|.+||.|.. +.+..++. .|||||+|.+.++|+.|++.|||.
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~ 86 (99)
T 2la6_A 7 HHSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGK 86 (99)
T ss_dssp CCSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCC
Confidence 344566789999999999999999999999999999 99998854 369999999999999999999999
Q ss_pred cccCccceeEEEEEe
Q 020783 171 EFRNAFSRSYVRVRE 185 (321)
Q Consensus 171 ~~~g~~~~~~i~v~~ 185 (321)
.+.| ..|+|..
T Consensus 87 ~~~g----~~l~V~~ 97 (99)
T 2la6_A 87 EFSG----NPIKVSF 97 (99)
T ss_dssp BSSS----SBCEEEE
T ss_pred EeCC----cEEEEEe
Confidence 9999 6666654
No 275
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.48 E-value=6.1e-14 Score=107.82 Aligned_cols=79 Identities=20% Similarity=0.249 Sum_probs=68.6
Q ss_pred CCCCeEEEcCCCC--CC---CHHHHHHHHhccCCeeEEEEccC-------CCCCcEEEEEEcCHHHHHHHHHhcCCcccC
Q 020783 4 RSSRTLYVGNLPG--DT---RMREVEDLFYKYGPIVDIDLKIP-------PRPPGYAFLEFEDYRDAEDAIRGRDGYNFD 71 (321)
Q Consensus 4 ~~~~~l~V~nLp~--~~---te~~L~~~F~~~G~I~~v~l~~~-------~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~ 71 (321)
.|+++|+|.|+-. ++ .++||++.|++||+|.+|.|+.+ +.++|||||+|.+.++|.+|++.|||..++
T Consensus 18 ~ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~ 97 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 97 (118)
T ss_dssp HSCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 4789999999932 22 36899999999999999999542 346799999999999999999999999999
Q ss_pred CceEEEEEccC
Q 020783 72 GYRLRVELAHG 82 (321)
Q Consensus 72 g~~i~V~~a~~ 82 (321)
|+.|.|.++..
T Consensus 98 GR~i~v~~~~~ 108 (118)
T 3ue2_A 98 GRKVVAEVYDQ 108 (118)
T ss_dssp TEECEEEEECH
T ss_pred CcEEEEEEcCh
Confidence 99999999764
No 276
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=6.7e-13 Score=98.82 Aligned_cols=76 Identities=18% Similarity=0.144 Sum_probs=68.4
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhc--CCcEEEEEEEcCCCcEEEEEeCCHHHHHHHHHHhCCCcccCccceeEEEE
Q 020783 106 RRSDYRVLVTGLPSSASWQDLKDHMRRA--GDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 183 (321)
Q Consensus 106 ~~~~~~i~V~nl~~~~t~~~l~~~f~~~--G~i~~~~i~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~i~v 183 (321)
.....+|||+|||..+++++|+++|.+| |.|..+.+.. +||||+|.+.++|+.|+..||+..+.| ..|.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~~----g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l~v 83 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIR----DYAFVHFSNREDAVEAMKALNGKVLDG----SPIEV 83 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEECS----SEEEEEESSHHHHHHHHHHHSSEEETT----EEEEE
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEeC----CeEEEEeCCHHHHHHHHHHhCCCEeCC----cEEEE
Confidence 4456799999999999999999999999 8999988763 499999999999999999999999999 88888
Q ss_pred EecCCC
Q 020783 184 REYDSR 189 (321)
Q Consensus 184 ~~~~~~ 189 (321)
......
T Consensus 84 ~~a~~~ 89 (99)
T 2cpd_A 84 TLAKPV 89 (99)
T ss_dssp ECCCCC
T ss_pred EECCCC
Confidence 877654
No 277
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.48 E-value=7.4e-13 Score=99.65 Aligned_cols=82 Identities=22% Similarity=0.219 Sum_probs=69.5
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCCC---cEEEEEeCCHHHHHHHHHHhCCCcccCccceeEEEE
Q 020783 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG---MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 183 (321)
Q Consensus 107 ~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~---g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~i~v 183 (321)
....+|||+|||..+++++|+++|.+||.|..+.+..+..+ +||||+|.+.++|+.|++.||+..+.|. ....|.|
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg-~~~~l~V 91 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPG-ASSSLVV 91 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTT-CSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCC-CCccEEE
Confidence 45679999999999999999999999999999999988643 6999999999999999999999998761 1134666
Q ss_pred EecCCC
Q 020783 184 REYDSR 189 (321)
Q Consensus 184 ~~~~~~ 189 (321)
......
T Consensus 92 ~~a~~~ 97 (105)
T 2dnh_A 92 KFADTD 97 (105)
T ss_dssp EESCSS
T ss_pred EECccC
Confidence 665544
No 278
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=1.5e-13 Score=101.08 Aligned_cols=76 Identities=16% Similarity=0.145 Sum_probs=66.2
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCC-cEEEEEEEcCCCcEEEEEeCCHHHHHHHHHHhCC-CcccCccceeEEEEE
Q 020783 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGD-VCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDR-SEFRNAFSRSYVRVR 184 (321)
Q Consensus 107 ~~~~~i~V~nl~~~~t~~~l~~~f~~~G~-i~~~~i~~~~~~g~afV~f~~~~~a~~A~~~l~g-~~~~g~~~~~~i~v~ 184 (321)
....+|||+|||.++++++|+++|.+||. |..+.+. ..+||||+|.+.++|++|++.||+ ..+.| ..|.|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~---~~g~afV~f~~~~~A~~A~~~l~g~~~~~g----~~l~v~ 78 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL---KSGYAFVDYPDQNWAIRAIETLSGKVELHG----KIMEVD 78 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE---ETTEEEECCSCHHHHHHHHHHHTTTCEETT----EECEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc---CCCEEEEEECCHHHHHHHHHHccCCeeECC----EEEEEE
Confidence 34568999999999999999999999999 6666653 356999999999999999999999 99999 888888
Q ss_pred ecCCC
Q 020783 185 EYDSR 189 (321)
Q Consensus 185 ~~~~~ 189 (321)
.....
T Consensus 79 ~a~~~ 83 (93)
T 2cqh_A 79 YSVSK 83 (93)
T ss_dssp ECCCC
T ss_pred EccCc
Confidence 77655
No 279
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=3.8e-13 Score=102.70 Aligned_cols=81 Identities=22% Similarity=0.354 Sum_probs=71.8
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCcE--------EEEEEEcCC----CcEEEEEeCCHHHHHHHHHHhCCCccc
Q 020783 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVC--------FSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFR 173 (321)
Q Consensus 106 ~~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~--------~~~i~~~~~----~g~afV~f~~~~~a~~A~~~l~g~~~~ 173 (321)
.....+|||+|||..+++++|+++|.+||.|. .+.+..+.. .+||||+|.+.++|+.|++.||+..+.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 45678999999999999999999999999999 688887743 469999999999999999999999999
Q ss_pred CccceeEEEEEecCCCC
Q 020783 174 NAFSRSYVRVREYDSRR 190 (321)
Q Consensus 174 g~~~~~~i~v~~~~~~r 190 (321)
| ..|.|.......
T Consensus 92 g----~~l~V~~a~~~~ 104 (113)
T 2cpe_A 92 G----SKLKVSLARKKP 104 (113)
T ss_dssp T----EECEEECSSCCC
T ss_pred C----CEEEEEECCCCC
Confidence 9 888888876553
No 280
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.47 E-value=1.7e-13 Score=102.50 Aligned_cols=80 Identities=16% Similarity=0.268 Sum_probs=66.6
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCCCcEEEEEeCCHHHHHHHHHHhCCCcccCccceeEEEEEe
Q 020783 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 185 (321)
Q Consensus 106 ~~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~i~v~~ 185 (321)
.....+|||+|||..+++++|+++|.+||.|..+........+||||+|.+.++|++|++.||+..+.| ..|.|..
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l~v~~ 87 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEG----RAIRLEL 87 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEEECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETT----EEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCC----eEEEEEE
Confidence 445789999999999999999999999998832222112345799999999999999999999999999 8888888
Q ss_pred cCCC
Q 020783 186 YDSR 189 (321)
Q Consensus 186 ~~~~ 189 (321)
....
T Consensus 88 a~~~ 91 (101)
T 2fc9_A 88 QGPR 91 (101)
T ss_dssp CSSC
T ss_pred cCCC
Confidence 7665
No 281
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.47 E-value=3.1e-13 Score=97.61 Aligned_cols=76 Identities=14% Similarity=0.219 Sum_probs=67.3
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCCCcEEEEEeCCHHHHHHHHHHh-CCCcccCccceeEEEE
Q 020783 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKL-DRSEFRNAFSRSYVRV 183 (321)
Q Consensus 105 ~~~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~afV~f~~~~~a~~A~~~l-~g~~~~g~~~~~~i~v 183 (321)
......+|||+|||..+++++|+++|.+||.|..+.+..+ .+||||+|.+.++|+.|++.| ++..+.| ..|.+
T Consensus 8 ~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~--kg~afV~f~~~~~A~~a~~~l~~~~~~~g----~~l~v 81 (85)
T 2ytc_A 8 EDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR--QQCAFIQFATRQAAEVAAEKSFNKLIVNG----RRLNV 81 (85)
T ss_dssp SCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG--GTEEEEEESSHHHHHHHHHTTTTTCEETT----EECCE
T ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC--CCEEEEEECCHHHHHHHHHHhcCCeeECC----CEEEE
Confidence 3455679999999999999999999999999999999875 469999999999999999999 9999999 66666
Q ss_pred Eec
Q 020783 184 REY 186 (321)
Q Consensus 184 ~~~ 186 (321)
...
T Consensus 82 ~~a 84 (85)
T 2ytc_A 82 KWG 84 (85)
T ss_dssp EEC
T ss_pred Eec
Confidence 543
No 282
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.47 E-value=1.6e-13 Score=101.73 Aligned_cols=76 Identities=14% Similarity=0.148 Sum_probs=65.7
Q ss_pred CCCCcEEEEeCCCC-CCCHHHHHHHHHhcCCcEEEEEEEcCCCcEEEEEeCCHHHHHHHHHHhCCCcccCccceeEEEEE
Q 020783 106 RRSDYRVLVTGLPS-SASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVR 184 (321)
Q Consensus 106 ~~~~~~i~V~nl~~-~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~i~v~ 184 (321)
.++..+|||+|||. .+++++|+++|.+||.|..+.+. .+||||+|.+.++|+.|++.||+..+.| ..|.|.
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~----~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l~V~ 78 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK----NAFGFIQFDNPQSVRDAIECESQEMNFG----KKLILE 78 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE----TTEEEEEESCHHHHHHHHHHHTCSSCBT----TTBCEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe----CCEEEEEECCHHHHHHHHHHcCCCeeCC----cEEEEE
Confidence 34567999999998 99999999999999999999996 4699999999999999999999999999 556665
Q ss_pred ecCCC
Q 020783 185 EYDSR 189 (321)
Q Consensus 185 ~~~~~ 189 (321)
.....
T Consensus 79 ~a~~~ 83 (96)
T 2kvi_A 79 VSSSN 83 (96)
T ss_dssp EEECC
T ss_pred EcCcC
Confidence 55433
No 283
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.47 E-value=7.2e-14 Score=102.56 Aligned_cols=76 Identities=14% Similarity=0.247 Sum_probs=66.3
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHhcC-CcEEEEEEEcCC----CcEEEEEeCCHHHHHHHHHHhC-CCcccCccceeEEEE
Q 020783 110 YRVLVTGLPSSASWQDLKDHMRRAG-DVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLD-RSEFRNAFSRSYVRV 183 (321)
Q Consensus 110 ~~i~V~nl~~~~t~~~l~~~f~~~G-~i~~~~i~~~~~----~g~afV~f~~~~~a~~A~~~l~-g~~~~g~~~~~~i~v 183 (321)
.+|||+|||.++++++|+++|.+|| +|..|.++.++. .|||||+|.+.++|++|++.++ +..+.| +.|.|
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~g----r~i~V 77 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILG----QKVSM 77 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETT----EEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECC----EEEEE
Confidence 4899999999999999999999999 899999987643 4799999999999999998874 567888 88988
Q ss_pred EecCCC
Q 020783 184 REYDSR 189 (321)
Q Consensus 184 ~~~~~~ 189 (321)
......
T Consensus 78 ~~a~~~ 83 (91)
T 2lxi_A 78 HYSDPK 83 (91)
T ss_dssp ECCCSC
T ss_pred EEcCCC
Confidence 876544
No 284
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.47 E-value=3.6e-13 Score=108.69 Aligned_cols=81 Identities=17% Similarity=0.183 Sum_probs=70.1
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCCCcEEEEEeCCHHHHHHHHHHhCCCcccCccceeEEEEEec
Q 020783 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREY 186 (321)
Q Consensus 107 ~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~i~v~~~ 186 (321)
....+|||+||+..+++++|+++|.+||+|..|.+.....++||||+|.+.++|+.|++.|||..+.|.. +.|+|...
T Consensus 44 s~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g--~~L~V~~A 121 (164)
T 1sjr_A 44 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNAC--CTLRIDFS 121 (164)
T ss_dssp CCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSC--SCEEEEEC
T ss_pred CceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCC--cEEEEEEe
Confidence 3456799999999999999999999999999999987766789999999999999999999999996521 56778776
Q ss_pred CCC
Q 020783 187 DSR 189 (321)
Q Consensus 187 ~~~ 189 (321)
+..
T Consensus 122 k~~ 124 (164)
T 1sjr_A 122 KLT 124 (164)
T ss_dssp SSS
T ss_pred cCC
Confidence 543
No 285
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.47 E-value=1.3e-13 Score=121.16 Aligned_cols=81 Identities=23% Similarity=0.254 Sum_probs=72.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcc--CCCCCcEEEEEEcCHHHHHHHHHhc-CCcccC---CceEEE
Q 020783 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGR-DGYNFD---GYRLRV 77 (321)
Q Consensus 4 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~--~~~~kg~aFVeF~~~e~A~~A~~~l-~g~~i~---g~~i~V 77 (321)
.+.++|||+|||+.+|+++|+++|++||.|..|.+.. ++.++|||||+|.+.++|.+|+..| +|..+. +++|.|
T Consensus 94 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v 173 (261)
T 3sde_A 94 THGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIV 173 (261)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEE
T ss_pred ccCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEE
Confidence 4678999999999999999999999999999999953 6778999999999999999999999 455554 999999
Q ss_pred EEccCCC
Q 020783 78 ELAHGGR 84 (321)
Q Consensus 78 ~~a~~~~ 84 (321)
.++....
T Consensus 174 ~~~~~~~ 180 (261)
T 3sde_A 174 EPMEQFD 180 (261)
T ss_dssp EECCCEE
T ss_pred eeccccC
Confidence 9988654
No 286
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.47 E-value=6.1e-13 Score=103.36 Aligned_cols=82 Identities=18% Similarity=0.168 Sum_probs=72.7
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcC---CCcEEEEEeCCHHHHHHHHHHhCCCcccCcccee
Q 020783 103 GVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDR---GGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRS 179 (321)
Q Consensus 103 ~~~~~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~---~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~ 179 (321)
++.....++|||+|||..+++++|+++|.+||.|..+.+..+. ..|||||+|.+.++|++|++.||+..+.| .
T Consensus 29 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g----~ 104 (124)
T 2kt5_A 29 GEGVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDG----R 104 (124)
T ss_dssp CCCCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSS----C
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECC----c
Confidence 3455677899999999999999999999999999999999876 34699999999999999999999999999 7
Q ss_pred EEEEEecCC
Q 020783 180 YVRVREYDS 188 (321)
Q Consensus 180 ~i~v~~~~~ 188 (321)
.|.|.....
T Consensus 105 ~l~V~~a~~ 113 (124)
T 2kt5_A 105 PMDIQLVAS 113 (124)
T ss_dssp EEEEEEECC
T ss_pred EEEEEEeCC
Confidence 788776544
No 287
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.47 E-value=4.3e-13 Score=99.60 Aligned_cols=76 Identities=14% Similarity=0.166 Sum_probs=68.0
Q ss_pred CCCCCcEEEEeCCCC-CCCHHHHHHHHHhcCCcEEEEEEEcCCCcEEEEEeCCHHHHHHHHHHhCCCcccCccceeEEEE
Q 020783 105 SRRSDYRVLVTGLPS-SASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 183 (321)
Q Consensus 105 ~~~~~~~i~V~nl~~-~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~i~v 183 (321)
..+...+|||+|||. .+++++|+++|.+||.|..+.+. .|||||+|.+.++|++|++.|||..+.| ..|.+
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~----~g~afV~f~~~~~A~~Ai~~l~g~~~~g----~~l~V 89 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK----NAFGFIQFDNPQSVRDAIEXESQEMNFG----KKLIL 89 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC----SSEEEEEESSHHHHHHHHHHHTTSEETT----EECEE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe----CCEEEEEECCHHHHHHHHHHcCCCEECC----EEEEE
Confidence 345678999999998 99999999999999999999984 5699999999999999999999999999 77888
Q ss_pred EecCC
Q 020783 184 REYDS 188 (321)
Q Consensus 184 ~~~~~ 188 (321)
.....
T Consensus 90 ~~a~~ 94 (97)
T 2xnq_A 90 EVSSS 94 (97)
T ss_dssp EECCC
T ss_pred EecCC
Confidence 77644
No 288
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=2.2e-13 Score=103.45 Aligned_cols=79 Identities=16% Similarity=0.214 Sum_probs=70.8
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCC--CcEEEEEeCCHHHHHHHHHHhCCCcccCccceeEEEE
Q 020783 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG--GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 183 (321)
Q Consensus 106 ~~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~--~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~i~v 183 (321)
.....+|||+|||..+++++|+++|.+||.|..+.+..+.. .|||||+|.+.++|++|++.|||..+.| ..|.|
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g----~~l~V 101 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEG----RKIEV 101 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETT----EECEE
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECC----EEEEE
Confidence 44567999999999999999999999999999999987754 4799999999999999999999999999 77888
Q ss_pred EecCC
Q 020783 184 REYDS 188 (321)
Q Consensus 184 ~~~~~ 188 (321)
.....
T Consensus 102 ~~a~~ 106 (109)
T 2err_A 102 NNATA 106 (109)
T ss_dssp EECCC
T ss_pred EECCC
Confidence 76544
No 289
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.46 E-value=2.3e-13 Score=101.10 Aligned_cols=80 Identities=14% Similarity=0.124 Sum_probs=69.6
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCC----CcEEEEEeCCHHHHHHHHHHhCCCcccCccceeE
Q 020783 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSY 180 (321)
Q Consensus 105 ~~~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 180 (321)
......+|||+|||..+++++|+++|.+||.|..+.+..+.. .+||||+|.+.++|++|++.||+..+.| +.
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g----~~ 86 (98)
T 2cqp_A 11 GKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGS----RK 86 (98)
T ss_dssp CCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETT----EE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCC----eE
Confidence 345568999999999999999999999999998777666543 3699999999999999999999999999 78
Q ss_pred EEEEecCC
Q 020783 181 VRVREYDS 188 (321)
Q Consensus 181 i~v~~~~~ 188 (321)
|.|.....
T Consensus 87 l~V~~a~~ 94 (98)
T 2cqp_A 87 VKLVLGSG 94 (98)
T ss_dssp CEEEESSC
T ss_pred EEEEEcCC
Confidence 88877654
No 290
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=3.5e-13 Score=103.17 Aligned_cols=80 Identities=8% Similarity=0.086 Sum_probs=70.2
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCc----EEEEEEEcCCCcEEEEEeCCHHHHHHHHHHhCCCcccCccceeEEE
Q 020783 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDV----CFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 182 (321)
Q Consensus 107 ~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i----~~~~i~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~i~ 182 (321)
.+..+|||+|||..+++++|.++|.+||.| ..+.+......|||||+|.+.++|+.|++.||+..+.| ..|.
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g----~~l~ 98 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYG----KILV 98 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSS----CBCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCC----cEEE
Confidence 456799999999999999999999999998 66777655667899999999999999999999999999 7788
Q ss_pred EEecCCCC
Q 020783 183 VREYDSRR 190 (321)
Q Consensus 183 v~~~~~~r 190 (321)
|.......
T Consensus 99 v~~a~~~~ 106 (115)
T 2cpx_A 99 IEFGKNKK 106 (115)
T ss_dssp EEECCCCS
T ss_pred EEEccCCC
Confidence 88776553
No 291
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.46 E-value=3.6e-13 Score=102.31 Aligned_cols=81 Identities=15% Similarity=0.181 Sum_probs=71.7
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCC----CcEEEEEeCCHHHHHHHHHHhCCCcccCccceeE
Q 020783 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSY 180 (321)
Q Consensus 105 ~~~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 180 (321)
......+|||+|||..+++++|+++|.+||.|..+.+..+.. .|||||+|.+.++|+.|+..|||..+.| ..
T Consensus 22 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g----~~ 97 (110)
T 1oo0_B 22 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMG----QT 97 (110)
T ss_dssp CBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETT----EE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECC----cE
Confidence 345678999999999999999999999999999999987753 3699999999999999999999999999 77
Q ss_pred EEEEecCCC
Q 020783 181 VRVREYDSR 189 (321)
Q Consensus 181 i~v~~~~~~ 189 (321)
|.|......
T Consensus 98 l~V~~a~~~ 106 (110)
T 1oo0_B 98 IQVDWCFVK 106 (110)
T ss_dssp CEEEESEES
T ss_pred EEEEEcccC
Confidence 888776543
No 292
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.46 E-value=2.7e-13 Score=101.33 Aligned_cols=75 Identities=13% Similarity=0.097 Sum_probs=67.0
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCCCcEEEEEeCCHHHHHHHHHHhCCCcccCccceeEEEEEec
Q 020783 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREY 186 (321)
Q Consensus 107 ~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~i~v~~~ 186 (321)
...++|||+|||..+++++|+++|.+||.|..+.+. ...+||||+|.+.++|+.|+..|||..+.| ..|.|...
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~--~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g----~~l~V~~a 98 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY--PEKGCCFIKYDTHEQAAVCIVALANFPFQG----RNLRTGWG 98 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE--TTTTEEEEECSSHHHHHHHHHHHTTCEETT----EECCCCBC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe--cCCCEEEEEECCHHHHHHHHHHhCCCeECC----eEEEEEec
Confidence 346799999999999999999999999999999988 456799999999999999999999999999 66766654
Q ss_pred C
Q 020783 187 D 187 (321)
Q Consensus 187 ~ 187 (321)
+
T Consensus 99 ~ 99 (101)
T 2la4_A 99 K 99 (101)
T ss_dssp C
T ss_pred c
Confidence 3
No 293
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.46 E-value=5.1e-13 Score=101.22 Aligned_cols=79 Identities=16% Similarity=0.186 Sum_probs=70.6
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCCC----cEEEEEeCCHHHHHHHHHHhCCCcccCccceeEE
Q 020783 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 181 (321)
Q Consensus 106 ~~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~----g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~i 181 (321)
.....+|||+|||..+++++|+++|.+||.|..+.+..++.. |||||+|.+.++|+.|++.|||..+.| +.|
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g----~~l 98 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAG----RPM 98 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSS----SCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECC----EEE
Confidence 445689999999999999999999999999999999988543 699999999999999999999999999 777
Q ss_pred EEEecCC
Q 020783 182 RVREYDS 188 (321)
Q Consensus 182 ~v~~~~~ 188 (321)
.|.....
T Consensus 99 ~V~~a~~ 105 (108)
T 2jrs_A 99 KVGHVTE 105 (108)
T ss_dssp EEECSCS
T ss_pred EEEEccc
Confidence 7776544
No 294
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=1.7e-12 Score=99.52 Aligned_cols=81 Identities=17% Similarity=0.144 Sum_probs=71.1
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCC----CcEEEEEeCCHHHHHHHHHHhCCCcccCcccee
Q 020783 104 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRS 179 (321)
Q Consensus 104 ~~~~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~ 179 (321)
.......+|||+|||..+++++|+++|.+||.|..+.+..++. .+||||+|.+.++|++|++.+++ .+.| .
T Consensus 12 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g----~ 86 (116)
T 2cqd_A 12 QKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDG----R 86 (116)
T ss_dssp CCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETT----E
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCC----E
Confidence 3445678999999999999999999999999999999988753 46999999999999999999998 8888 8
Q ss_pred EEEEEecCCC
Q 020783 180 YVRVREYDSR 189 (321)
Q Consensus 180 ~i~v~~~~~~ 189 (321)
.|.|......
T Consensus 87 ~l~V~~a~~~ 96 (116)
T 2cqd_A 87 KANVNLAYLG 96 (116)
T ss_dssp ECEEEESTTT
T ss_pred EEEEEEcccC
Confidence 8888876543
No 295
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.46 E-value=1.7e-13 Score=101.30 Aligned_cols=77 Identities=9% Similarity=0.081 Sum_probs=66.8
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCC--cEEEEEEEcCC----CcEEEEEeCCHHHHHHHHHHhCCCc----ccCcc
Q 020783 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGD--VCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSE----FRNAF 176 (321)
Q Consensus 107 ~~~~~i~V~nl~~~~t~~~l~~~f~~~G~--i~~~~i~~~~~----~g~afV~f~~~~~a~~A~~~l~g~~----~~g~~ 176 (321)
..-.+|||+|||+.+|+++|+++|++||. +..|.+..++. .|||||+|.+.++|++|++.||+.. ++|
T Consensus 7 ~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~G-- 84 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDG-- 84 (95)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETT--
T ss_pred CccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECC--
Confidence 44569999999999999999999999995 67888887754 4699999999999999999999974 778
Q ss_pred ceeEEEEEecC
Q 020783 177 SRSYVRVREYD 187 (321)
Q Consensus 177 ~~~~i~v~~~~ 187 (321)
+.|.|...+
T Consensus 85 --r~i~V~~Ak 93 (95)
T 2lkz_A 85 --KTIGVDFAK 93 (95)
T ss_dssp --EEEEEEECC
T ss_pred --EEEEEEEcc
Confidence 888887764
No 296
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.46 E-value=7.6e-13 Score=107.03 Aligned_cols=79 Identities=15% Similarity=0.164 Sum_probs=71.8
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCCC----cEEEEEeCCHHHHHHHHHHhCCCcccCccceeEEE
Q 020783 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 182 (321)
Q Consensus 107 ~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~----g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~i~ 182 (321)
....+|||+|||..+++++|+++|.+||+|..|.|..+... +||||+|.+.++|++|++.||+..+.| ..|.
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g----~~l~ 112 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDD----RIIR 112 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETT----EECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECC----eEEE
Confidence 45679999999999999999999999999999999988653 599999999999999999999999999 7888
Q ss_pred EEecCCC
Q 020783 183 VREYDSR 189 (321)
Q Consensus 183 v~~~~~~ 189 (321)
|......
T Consensus 113 V~~a~~~ 119 (156)
T 1h2v_Z 113 TDWDAGF 119 (156)
T ss_dssp EEEESCC
T ss_pred EEECCCC
Confidence 8887654
No 297
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.45 E-value=6.8e-13 Score=97.18 Aligned_cols=79 Identities=16% Similarity=0.226 Sum_probs=69.9
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCC---CcEEEEEeCCHHHHHHHHHHhCCCcccCccceeEE
Q 020783 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG---GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 181 (321)
Q Consensus 105 ~~~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~---~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~i 181 (321)
......+|||+|||.++++++|+++|.+| .|..+.+..+.. .|||||+|.+.++|++|+. ||+..+.| +.|
T Consensus 6 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~g----r~i 79 (91)
T 2dgw_A 6 SGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGG----RYI 79 (91)
T ss_dssp CCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETT----EEE
T ss_pred CCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCC----cEE
Confidence 34556799999999999999999999999 999999998844 3699999999999999999 99999999 788
Q ss_pred EEEecCCC
Q 020783 182 RVREYDSR 189 (321)
Q Consensus 182 ~v~~~~~~ 189 (321)
.|......
T Consensus 80 ~v~~a~~~ 87 (91)
T 2dgw_A 80 EVFREKSG 87 (91)
T ss_dssp EEEEESSC
T ss_pred EEEECCcC
Confidence 88776544
No 298
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=1.5e-12 Score=96.53 Aligned_cols=77 Identities=13% Similarity=0.141 Sum_probs=68.2
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCCCcEEEEEeCCHHHHHHHHHHhCCCcccCccceeEEEEEe
Q 020783 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 185 (321)
Q Consensus 106 ~~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~i~v~~ 185 (321)
.....+|||+|+ ++++++|+++|.+||+|..+.+. ...+||||+|.+.++|++|+..||+..+.| ..|.|..
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~--~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g----~~l~v~~ 83 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD--PPRNCAFVTYEKMESADQAVAELNGTQVES----VQLKVNI 83 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE--TTTTEEEEEESSHHHHHHHHHHTTTEEETT----EEEEEEC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec--CCCCEEEEEECCHHHHHHHHHHhCCCeECC----eEEEEEE
Confidence 345679999996 89999999999999999999985 556799999999999999999999999999 8888888
Q ss_pred cCCCC
Q 020783 186 YDSRR 190 (321)
Q Consensus 186 ~~~~r 190 (321)
.....
T Consensus 84 a~~~~ 88 (97)
T 1x5p_A 84 ARKQP 88 (97)
T ss_dssp CSSCC
T ss_pred CCCCC
Confidence 76553
No 299
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.45 E-value=6.7e-13 Score=99.94 Aligned_cols=80 Identities=14% Similarity=0.214 Sum_probs=71.0
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCCC----cEEEEEeCCHHHHHHHHHHhCCCcccCccceeE
Q 020783 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSY 180 (321)
Q Consensus 105 ~~~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~----g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 180 (321)
......+|||+|||..+++++|+++|.+||+|..+.+..++.. +||||+|.+.++|++|++. ++..+.| ..
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g----~~ 86 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDG----RN 86 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETT----EE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECC----EE
Confidence 4456789999999999999999999999999999999988543 6999999999999999988 9999999 78
Q ss_pred EEEEecCCC
Q 020783 181 VRVREYDSR 189 (321)
Q Consensus 181 i~v~~~~~~ 189 (321)
|.|......
T Consensus 87 l~V~~a~~~ 95 (105)
T 2dh8_A 87 IDPKPCTPR 95 (105)
T ss_dssp EBCCCSCCS
T ss_pred EEEEEccCC
Confidence 888776544
No 300
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.45 E-value=3.6e-13 Score=103.66 Aligned_cols=78 Identities=19% Similarity=0.288 Sum_probs=69.1
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCC----CcEEEEEeCCHHHHHHHHHHhCCCcccCccceeE
Q 020783 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSY 180 (321)
Q Consensus 105 ~~~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 180 (321)
......+|||+|||.++++++|+++|.+||.|..+.+..+.. .|||||+|.+.++|++|++.||+..+.| ..
T Consensus 36 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~ 111 (118)
T 2khc_A 36 EGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGT----KR 111 (118)
T ss_dssp CCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETT----EE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECC----EE
Confidence 345678999999999999999999999999999999987743 4799999999999999999999999999 66
Q ss_pred EEEEec
Q 020783 181 VRVREY 186 (321)
Q Consensus 181 i~v~~~ 186 (321)
|+|...
T Consensus 112 l~V~~a 117 (118)
T 2khc_A 112 LKVQLK 117 (118)
T ss_dssp CCEEEC
T ss_pred EEEEec
Confidence 766543
No 301
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.45 E-value=5.6e-13 Score=102.08 Aligned_cols=78 Identities=21% Similarity=0.233 Sum_probs=69.6
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCC-CcEEEEEeCCHHHHHHHHHHhCCCcccCccceeEEEEEe
Q 020783 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG-GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 185 (321)
Q Consensus 107 ~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~-~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~i~v~~ 185 (321)
....+|||+|||..+++++|.++|.+||.|..+.+..+.. .|||||+|.+.++|..|+..|||..+.| ..|.+..
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l~v~~ 81 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSN----RYLVVLY 81 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSS----CBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECC----eEEEEEE
Confidence 4567999999999999999999999999999999987644 4799999999999999999999999999 6777776
Q ss_pred cCC
Q 020783 186 YDS 188 (321)
Q Consensus 186 ~~~ 188 (321)
...
T Consensus 82 a~~ 84 (115)
T 3lqv_A 82 YNA 84 (115)
T ss_dssp CCH
T ss_pred ecC
Confidence 543
No 302
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.44 E-value=1.9e-13 Score=104.11 Aligned_cols=76 Identities=22% Similarity=0.317 Sum_probs=66.9
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCCCcEEEEEeCCHHHHHHHHHHhCCCcccCccceeEEEEEec
Q 020783 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREY 186 (321)
Q Consensus 107 ~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~i~v~~~ 186 (321)
...++|||+|||.++++++|+++|.+||.|..+.+.. ..+||||+|.+.++|+.|++.|||..+.| +.|.|...
T Consensus 8 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~--~~g~afV~f~~~~~A~~Ai~~l~g~~~~g----~~l~V~~a 81 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE--GGITAIVEFLEPLEARKAFRHLAYSKFHH----VPLYLEWA 81 (111)
T ss_dssp EEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS--SSSCEEEEESCHHHHHHHHHHHTTCBSSS----SBCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC--CCCEEEEEeCCHHHHHHHHHHhCCCEECC----eEEEEEEC
Confidence 3467999999999999999999999999999998874 45699999999999999999999999999 66666655
Q ss_pred CC
Q 020783 187 DS 188 (321)
Q Consensus 187 ~~ 188 (321)
..
T Consensus 82 ~~ 83 (111)
T 1whx_A 82 PI 83 (111)
T ss_dssp ET
T ss_pred CC
Confidence 43
No 303
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.44 E-value=1.5e-13 Score=100.62 Aligned_cols=76 Identities=17% Similarity=0.177 Sum_probs=64.6
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHhcC--CcEEEEEEEcCCC----cEEEEEeCCHHHHHHHHHHhCCCcccCccceeEEEE
Q 020783 110 YRVLVTGLPSSASWQDLKDHMRRAG--DVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 183 (321)
Q Consensus 110 ~~i~V~nl~~~~t~~~l~~~f~~~G--~i~~~~i~~~~~~----g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~i~v 183 (321)
.+|||+|||.++++++|+++|.+|| .|..+.+..++.. |||||+|.+.++|++|++.|||..+.| +.|.|
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~g----r~i~V 77 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHG----QNPVV 77 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSS----CCCEE
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCC----EEEEE
Confidence 4799999999999999999999999 9999999988543 699999999999999999999999999 77777
Q ss_pred EecCCC
Q 020783 184 REYDSR 189 (321)
Q Consensus 184 ~~~~~~ 189 (321)
......
T Consensus 78 ~~~~~~ 83 (90)
T 3p5t_L 78 TPSNKL 83 (90)
T ss_dssp CCC---
T ss_pred EECCCC
Confidence 765543
No 304
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.44 E-value=7.5e-13 Score=96.05 Aligned_cols=75 Identities=16% Similarity=0.240 Sum_probs=66.0
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCC----CcEEEEEeCCHHHHHHHHHHhCCCcccCccceeEE
Q 020783 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 181 (321)
Q Consensus 106 ~~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~i 181 (321)
.....+|||+|||..+++++|+++|.+||.|..+.+..++. .|||||+|.+.++|++|++ +++..+.| ..|
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g----~~i 82 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDG----RVI 82 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETT----EEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECC----EEE
Confidence 34567999999999999999999999999999999998865 3699999999999999995 58888999 777
Q ss_pred EEEe
Q 020783 182 RVRE 185 (321)
Q Consensus 182 ~v~~ 185 (321)
.+..
T Consensus 83 ~v~~ 86 (87)
T 3s7r_A 83 DPKK 86 (87)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 7654
No 305
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=7.4e-14 Score=100.99 Aligned_cols=68 Identities=21% Similarity=0.275 Sum_probs=62.8
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCC----CcEEEEEeCCHHHHHHHHHHhCCCcccC
Q 020783 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRN 174 (321)
Q Consensus 107 ~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~----~g~afV~f~~~~~a~~A~~~l~g~~~~g 174 (321)
.+..+|||+|||..+++++|+++|.+||.|..+.+..++. .|||||+|.+.++|+.|++.|||..+.|
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 74 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQA 74 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEee
Confidence 3456999999999999999999999999999999988754 4699999999999999999999999998
No 306
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.44 E-value=8.6e-13 Score=96.08 Aligned_cols=76 Identities=17% Similarity=0.297 Sum_probs=68.7
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCC----CcEEEEEeCCHHHHHHHHHHhCCCcccCccceeEEEEE
Q 020783 109 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVR 184 (321)
Q Consensus 109 ~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~i~v~ 184 (321)
..+|||+|||..+++++|+++|.+||.|..+.+..+.. .|||||+|.+.++|++|+ .||+..+.| ..|.+.
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g----~~l~V~ 80 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRG----RQIKVI 80 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETT----EECEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECC----cEEEEE
Confidence 35899999999999999999999999999999998753 469999999999999999 999999999 888888
Q ss_pred ecCCC
Q 020783 185 EYDSR 189 (321)
Q Consensus 185 ~~~~~ 189 (321)
..+..
T Consensus 81 ~a~~~ 85 (89)
T 3ucg_A 81 PKRTN 85 (89)
T ss_dssp ETTTT
T ss_pred EccCC
Confidence 76543
No 307
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.44 E-value=4.1e-13 Score=102.45 Aligned_cols=79 Identities=14% Similarity=0.169 Sum_probs=67.7
Q ss_pred CCCCCeEEEcCCCCCC----------CHHHHHHHHhccCCeeEEEEccCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCC
Q 020783 3 SRSSRTLYVGNLPGDT----------RMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDG 72 (321)
Q Consensus 3 ~~~~~~l~V~nLp~~~----------te~~L~~~F~~~G~I~~v~l~~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g 72 (321)
..+++.|.|.|+=..- .++||++.|++||.|.+|.|..+ .++|||||+|.+.++|.+|++.|||..++|
T Consensus 4 p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~-~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~G 82 (114)
T 3s6e_A 4 PLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKN-SAQGNVYVKCPSIAAAIAAVNALHGRWFAG 82 (114)
T ss_dssp CCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTT-CTTCCEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecC-CCcEEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 3578899999993322 23578999999999999999654 358999999999999999999999999999
Q ss_pred ceEEEEEccC
Q 020783 73 YRLRVELAHG 82 (321)
Q Consensus 73 ~~i~V~~a~~ 82 (321)
+.|.|.++..
T Consensus 83 R~i~v~~~~~ 92 (114)
T 3s6e_A 83 KMITAAYVPL 92 (114)
T ss_dssp EECEEEEECH
T ss_pred EEEEEEEEcH
Confidence 9999999863
No 308
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=3.8e-13 Score=100.98 Aligned_cols=73 Identities=18% Similarity=0.270 Sum_probs=65.1
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCC---CcEEEEEeCCHHHHHHHHHHhCCCcccCccceeEEEEE
Q 020783 108 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG---GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVR 184 (321)
Q Consensus 108 ~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~---~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~i~v~ 184 (321)
...+|||+|||.++++++|.++|.+||+|..|.+..++. .|||||+|.+.++|+.|+. +++..+.| +.|.|.
T Consensus 10 ~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~g----r~l~V~ 84 (103)
T 1s79_A 10 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKE----TDLLIL 84 (103)
T ss_dssp GGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTT----TTCEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECC----EEEEEE
Confidence 456899999999999999999999999999999998754 4799999999999999998 99999999 555554
Q ss_pred e
Q 020783 185 E 185 (321)
Q Consensus 185 ~ 185 (321)
.
T Consensus 85 ~ 85 (103)
T 1s79_A 85 F 85 (103)
T ss_dssp E
T ss_pred E
Confidence 3
No 309
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.43 E-value=6.7e-13 Score=103.42 Aligned_cols=80 Identities=10% Similarity=0.120 Sum_probs=68.4
Q ss_pred CCCCcEEEEeCCCCCCCHHHHH----HHHHhcCCcEEEEEEEc-CCCcEEEEEeCCHHHHHHHHHHhCCCcccCccceeE
Q 020783 106 RRSDYRVLVTGLPSSASWQDLK----DHMRRAGDVCFSQVFRD-RGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSY 180 (321)
Q Consensus 106 ~~~~~~i~V~nl~~~~t~~~l~----~~f~~~G~i~~~~i~~~-~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 180 (321)
..+..+|||+|||..+++++|+ ++|.+||.|..|.+..+ ...|||||+|.+.++|..|++.|||..+.| +.
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~g----r~ 101 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQG----NP 101 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTT----SC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCC----CE
Confidence 3456799999999999999876 69999999999988654 445899999999999999999999999999 67
Q ss_pred EEEEecCCC
Q 020783 181 VRVREYDSR 189 (321)
Q Consensus 181 i~v~~~~~~ 189 (321)
|.|......
T Consensus 102 l~V~~a~~~ 110 (127)
T 2a3j_A 102 LVITFSETP 110 (127)
T ss_dssp CEEEECCCC
T ss_pred EEEEEccCc
Confidence 777765543
No 310
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=4.9e-13 Score=100.60 Aligned_cols=79 Identities=16% Similarity=0.165 Sum_probs=67.4
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEE-EEEEEcCC---CcEEEEEeCCHHHHHHHHHHhCCCcccCcccee
Q 020783 104 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCF-SQVFRDRG---GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRS 179 (321)
Q Consensus 104 ~~~~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~-~~i~~~~~---~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~ 179 (321)
+......+|||+|||.++++++|+++|.+||.|.. +.|..+.. .|||||+|.+.++|++|+.. |+..+.| +
T Consensus 10 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~g----r 84 (104)
T 1wg5_A 10 PDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGH----R 84 (104)
T ss_dssp SSCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSS----S
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCC----c
Confidence 44456789999999999999999999999999987 77776632 47999999999999999987 9999999 6
Q ss_pred EEEEEecC
Q 020783 180 YVRVREYD 187 (321)
Q Consensus 180 ~i~v~~~~ 187 (321)
.|.|....
T Consensus 85 ~i~v~~~~ 92 (104)
T 1wg5_A 85 YIEIFKSS 92 (104)
T ss_dssp CCEEEEEC
T ss_pred EEEEEECC
Confidence 67776543
No 311
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.42 E-value=1.1e-12 Score=101.75 Aligned_cols=76 Identities=17% Similarity=0.291 Sum_probs=68.9
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCC----CcEEEEEeCCHHHHHHHHHHhCCCcccCccceeEEEEE
Q 020783 109 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVR 184 (321)
Q Consensus 109 ~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~i~v~ 184 (321)
..+|||+|||..+++++|+++|.+||.|..+.+..++. .|||||+|.+.++|+.|+ .||+..+.| ..|.|.
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g----~~l~V~ 110 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRG----RTIKVL 110 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETT----EECEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECC----eEEEEE
Confidence 56999999999999999999999999999999998743 369999999999999999 899999999 888888
Q ss_pred ecCCC
Q 020783 185 EYDSR 189 (321)
Q Consensus 185 ~~~~~ 189 (321)
..+..
T Consensus 111 ~a~~~ 115 (124)
T 2jwn_A 111 PKRTN 115 (124)
T ss_dssp ESSCC
T ss_pred ECCCC
Confidence 76544
No 312
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.42 E-value=2.7e-13 Score=100.10 Aligned_cols=77 Identities=14% Similarity=0.136 Sum_probs=66.9
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCCC----cEEEEEeCCHHHHHHHHHHhCCCcccCccceeEEE
Q 020783 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 182 (321)
Q Consensus 107 ~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~----g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~i~ 182 (321)
+...+|||+|||.++++++|+++|.+||.|..+.+..++.. +||||+|.+.++|++|++.||+..+.| +.|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g----r~l~ 88 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGS----RKVK 88 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETT----EECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECC----cEEE
Confidence 34589999999999999999999999999988877775433 699999999999999999999999999 7787
Q ss_pred EEecC
Q 020783 183 VREYD 187 (321)
Q Consensus 183 v~~~~ 187 (321)
|....
T Consensus 89 v~~a~ 93 (95)
T 2ek1_A 89 LSGPS 93 (95)
T ss_dssp EECCC
T ss_pred EEecc
Confidence 77643
No 313
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=8.4e-13 Score=98.95 Aligned_cols=77 Identities=17% Similarity=0.233 Sum_probs=66.1
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCCC---cEEEEEeCCHHHHHHHHHHhCCCcccCccceeEE
Q 020783 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG---MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 181 (321)
Q Consensus 105 ~~~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~---g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~i 181 (321)
......+|||+|||.++++++|+++|.+||.+ .+.|..++.+ |||||+|.+.++|++|+ .+|+..+.| +.|
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~g----r~i 84 (102)
T 1wez_A 11 QSTTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAM-AKDKANMQH----RYV 84 (102)
T ss_dssp CCSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHH-TTSSCCSSS----SCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHH-HhCCCeECC----cEE
Confidence 34566799999999999999999999999955 9999888643 59999999999999999 589999999 666
Q ss_pred EEEecC
Q 020783 182 RVREYD 187 (321)
Q Consensus 182 ~v~~~~ 187 (321)
.|....
T Consensus 85 ~V~~~~ 90 (102)
T 1wez_A 85 ELFLNS 90 (102)
T ss_dssp EEEEEC
T ss_pred EEEECC
Confidence 666544
No 314
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=1.4e-12 Score=96.10 Aligned_cols=73 Identities=18% Similarity=0.247 Sum_probs=62.5
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCCC-cEEEEEeCCHHHHHHHHHHhCCCcccCccceeEEEEEec
Q 020783 108 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG-MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREY 186 (321)
Q Consensus 108 ~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~-g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~i~v~~~ 186 (321)
...+|||+|||.++++++|+++|.+||.|..| ..+... .||||+|.+.++|+.|+. ||+..+.| ..|.|...
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~~afV~f~~~~~a~~ai~-l~g~~~~g----~~l~V~~a 79 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGVFAIVEMGDVGAREAVLS-QSQHSLGG----HRLRVRPR 79 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCCEEEEEESSHHHHHHHHT-CSCCEETT----EECCCBCS
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCcEEEEEECCHHHHHHHHh-cCCeEECC----EEEEEEEC
Confidence 44699999999999999999999999999987 333322 299999999999999999 99999999 77777654
Q ss_pred C
Q 020783 187 D 187 (321)
Q Consensus 187 ~ 187 (321)
.
T Consensus 80 ~ 80 (94)
T 2e5g_A 80 E 80 (94)
T ss_dssp C
T ss_pred C
Confidence 3
No 315
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.41 E-value=6.7e-13 Score=100.60 Aligned_cols=76 Identities=28% Similarity=0.328 Sum_probs=67.3
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCC---CcEEEEEeCCHHHHHHHHHHhCCCcccCccceeEEE
Q 020783 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG---GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 182 (321)
Q Consensus 106 ~~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~---~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~i~ 182 (321)
.....+|||+|||.++++++|+++|..| .|..|.|..+.. .|||||+|.+.++|++|+ .+|+..+.| +.|.
T Consensus 13 ~~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~g----r~i~ 86 (109)
T 2dnn_A 13 NPDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQ----RYVE 86 (109)
T ss_dssp CHHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETT----EEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECC----eEEE
Confidence 3446799999999999999999999999 899999987754 479999999999999999 799999999 7888
Q ss_pred EEecC
Q 020783 183 VREYD 187 (321)
Q Consensus 183 v~~~~ 187 (321)
|....
T Consensus 87 V~~a~ 91 (109)
T 2dnn_A 87 VSPAT 91 (109)
T ss_dssp EEECC
T ss_pred EEECC
Confidence 86653
No 316
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.41 E-value=8.4e-13 Score=101.70 Aligned_cols=79 Identities=27% Similarity=0.372 Sum_probs=69.5
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCC---cEEEEEEEcCCC---cEEEEEeCCHHHHHHHHHHhCCCcccCccc
Q 020783 104 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGD---VCFSQVFRDRGG---MTGIVDYTSYDDMKYAIRKLDRSEFRNAFS 177 (321)
Q Consensus 104 ~~~~~~~~i~V~nl~~~~t~~~l~~~f~~~G~---i~~~~i~~~~~~---g~afV~f~~~~~a~~A~~~l~g~~~~g~~~ 177 (321)
+......+|||+|||.++++++|+++|..||. |..|.|..+..+ |||||+|.+.++|++|++ +|+..+.|
T Consensus 12 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~g--- 87 (118)
T 2db1_A 12 PEGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGH--- 87 (118)
T ss_dssp SCBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETT---
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECC---
Confidence 33456789999999999999999999999999 899999987653 699999999999999998 99999999
Q ss_pred eeEEEEEecC
Q 020783 178 RSYVRVREYD 187 (321)
Q Consensus 178 ~~~i~v~~~~ 187 (321)
+.|.|....
T Consensus 88 -r~i~V~~a~ 96 (118)
T 2db1_A 88 -RYIEVFKSH 96 (118)
T ss_dssp -EEEEEEEEC
T ss_pred -eEEEEEECC
Confidence 788886653
No 317
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.41 E-value=5.2e-13 Score=98.93 Aligned_cols=80 Identities=16% Similarity=0.213 Sum_probs=69.7
Q ss_pred CCCCcEEEEeCCCCCCCHHHHH----HHHHhcCCcEEEEEEEc-CCCcEEEEEeCCHHHHHHHHHHhCCCcccCccceeE
Q 020783 106 RRSDYRVLVTGLPSSASWQDLK----DHMRRAGDVCFSQVFRD-RGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSY 180 (321)
Q Consensus 106 ~~~~~~i~V~nl~~~~t~~~l~----~~f~~~G~i~~~~i~~~-~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 180 (321)
.++..+|||+|||.++++++|+ ++|.+||.|..+.+... ...|||||+|.+.++|+.|++.|||..+.| ..
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~ 80 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYD----KP 80 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETT----EE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECC----cE
Confidence 4566799999999999999999 99999999999988743 234799999999999999999999999999 78
Q ss_pred EEEEecCCC
Q 020783 181 VRVREYDSR 189 (321)
Q Consensus 181 i~v~~~~~~ 189 (321)
|.+......
T Consensus 81 l~v~~a~~~ 89 (97)
T 1nu4_A 81 MRIQYAKTD 89 (97)
T ss_dssp CEEEECSSC
T ss_pred EEEEEccCC
Confidence 888776554
No 318
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=5.1e-12 Score=94.69 Aligned_cols=78 Identities=24% Similarity=0.349 Sum_probs=68.3
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCCC----cEEEEEeCCHHHHHHHHHHhCCCcccCccceeEE
Q 020783 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 181 (321)
Q Consensus 106 ~~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~----g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~i 181 (321)
.....+|||+|||..+++++|+++|.+||.|..+.+..++.. |||||+|.+.++|++|+. ++..+.| ..|
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g----~~l 85 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDG----RWC 85 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETT----EEE
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCC----eEE
Confidence 345678999999999999999999999999999999988642 699999999999999998 4678888 888
Q ss_pred EEEecCCC
Q 020783 182 RVREYDSR 189 (321)
Q Consensus 182 ~v~~~~~~ 189 (321)
.|......
T Consensus 86 ~v~~a~~~ 93 (103)
T 2cqg_A 86 DCKLPNSK 93 (103)
T ss_dssp EEECCCTT
T ss_pred EEEecCCC
Confidence 88876554
No 319
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.41 E-value=2.3e-13 Score=97.54 Aligned_cols=66 Identities=11% Similarity=0.123 Sum_probs=59.6
Q ss_pred cEEEEeCCCCCC------CHHHHHHHHHhcCCcEEEEEEEc--CCCcEEEEEeCCHHHHHHHHHHhCCCcccCc
Q 020783 110 YRVLVTGLPSSA------SWQDLKDHMRRAGDVCFSQVFRD--RGGMTGIVDYTSYDDMKYAIRKLDRSEFRNA 175 (321)
Q Consensus 110 ~~i~V~nl~~~~------t~~~l~~~f~~~G~i~~~~i~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 175 (321)
++|||+|||..+ ++++|+++|.+||+|..+.+... ...|||||+|.+.++|+.|++.|||..+.|+
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~ 75 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQ 75 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSS
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCc
Confidence 589999999999 77999999999999999998743 2347999999999999999999999999994
No 320
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.41 E-value=3.1e-12 Score=98.96 Aligned_cols=77 Identities=10% Similarity=0.053 Sum_probs=66.2
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCCCcE-EEEEeCCHHHHHHHHHHhCCCcccCccceeEEEEEecC
Q 020783 109 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMT-GIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYD 187 (321)
Q Consensus 109 ~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~-afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~i~v~~~~ 187 (321)
...|||+||+..+++++|.++|.+||.|..|.+... .|| |||+|.+.++|..|++.|||..+.|.. +.|+|...+
T Consensus 25 vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~--~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~--~~l~V~~Ak 100 (124)
T 2e5i_A 25 VLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR--NGIQAMVEFESVLCAQKAKAALNGADIYAGC--CTLKIEYAR 100 (124)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES--SSEEEEEEESSHHHHHHHHHHHTTCCCBTTB--SEEEEECCS
T ss_pred EEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCEecCCC--eEEEEEEec
Confidence 345789999999999999999999999999999764 375 999999999999999999999998732 467887765
Q ss_pred CC
Q 020783 188 SR 189 (321)
Q Consensus 188 ~~ 189 (321)
..
T Consensus 101 ~~ 102 (124)
T 2e5i_A 101 PT 102 (124)
T ss_dssp CS
T ss_pred CC
Confidence 44
No 321
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=1.2e-12 Score=100.30 Aligned_cols=78 Identities=17% Similarity=0.241 Sum_probs=70.0
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCC----CcEEEEEeCCHHHHHHHHHHhCCCcccCccceeEEEE
Q 020783 108 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 183 (321)
Q Consensus 108 ~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~i~v 183 (321)
...+|||+|||..+++++|+++|.+||.|..+.+..++. .|||||+|.+.++|+.|++. ++..+.| ..|.|
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g----~~l~V 100 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDG----RVVEP 100 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETT----EEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECC----EEEEE
Confidence 457999999999999999999999999999999998754 46999999999999999987 9999999 88988
Q ss_pred EecCCCC
Q 020783 184 REYDSRR 190 (321)
Q Consensus 184 ~~~~~~r 190 (321)
.......
T Consensus 101 ~~a~~~~ 107 (116)
T 1x4b_A 101 KRAVARE 107 (116)
T ss_dssp ECCSSCC
T ss_pred EECCCCc
Confidence 8876553
No 322
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.41 E-value=3.2e-13 Score=102.52 Aligned_cols=78 Identities=13% Similarity=0.106 Sum_probs=66.9
Q ss_pred CCCCcEEEEeCCCCC-CCHHHHHHHHHhcCCcEEEEEEEcCCCcEEEEEeCCHHHHHHHHHHhCC--CcccCccceeEEE
Q 020783 106 RRSDYRVLVTGLPSS-ASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDR--SEFRNAFSRSYVR 182 (321)
Q Consensus 106 ~~~~~~i~V~nl~~~-~t~~~l~~~f~~~G~i~~~~i~~~~~~g~afV~f~~~~~a~~A~~~l~g--~~~~g~~~~~~i~ 182 (321)
..+..+|||+|||.+ +++++|+++|.+||.|..+.+... .+||||+|.+.++|+.|++.|++ ..+.| +.|.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~--kg~aFVef~~~~~A~~Ai~~l~~~~~~l~G----r~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM--KSQAFIEMETREDAMAMVDHCLKKALWFQG----RCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT--TTEEEEECSSHHHHHHHHHHHHHSCCCSSS----SCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC--CCEEEEEECCHHHHHHHHHHhccCCceECC----EEEE
Confidence 445789999999998 999999999999999999999743 57999999999999999998864 56888 6777
Q ss_pred EEecCCC
Q 020783 183 VREYDSR 189 (321)
Q Consensus 183 v~~~~~~ 189 (321)
|......
T Consensus 96 V~~a~~~ 102 (112)
T 1x4f_A 96 VDLSEKY 102 (112)
T ss_dssp EEEECSC
T ss_pred EEECccc
Confidence 7766443
No 323
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.40 E-value=1.6e-12 Score=102.87 Aligned_cols=79 Identities=23% Similarity=0.217 Sum_probs=70.0
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCC----CcEEEEEeCCHHHHHHHHHHhCCCcccCccce
Q 020783 103 GVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSR 178 (321)
Q Consensus 103 ~~~~~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~ 178 (321)
........+|||+|||..+++++|+++|.+||.|..+.+..++. .|||||+|.+.++|++|++.||+..+.|
T Consensus 57 ~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g---- 132 (140)
T 2ku7_A 57 GGSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFG---- 132 (140)
T ss_dssp CSSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETT----
T ss_pred CCCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECC----
Confidence 34455678999999999999999999999999999999987743 4799999999999999999999999999
Q ss_pred eEEEEEe
Q 020783 179 SYVRVRE 185 (321)
Q Consensus 179 ~~i~v~~ 185 (321)
..|.|..
T Consensus 133 ~~l~v~~ 139 (140)
T 2ku7_A 133 RTIRVNL 139 (140)
T ss_dssp EEEEEEC
T ss_pred EEEEEEe
Confidence 7777653
No 324
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.40 E-value=1.8e-12 Score=104.85 Aligned_cols=76 Identities=20% Similarity=0.119 Sum_probs=68.1
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcC--CcEEEEEEEcCCC----cEEEEEeCCHHHHHHHHHHhCCCcccCccceeEE
Q 020783 108 SDYRVLVTGLPSSASWQDLKDHMRRAG--DVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 181 (321)
Q Consensus 108 ~~~~i~V~nl~~~~t~~~l~~~f~~~G--~i~~~~i~~~~~~----g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~i 181 (321)
...+|||+|||..+++++|+++|.+|| .|..+.+..+... |||||+|.+.++|+.|++.|||..+.| +.|
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~G----r~l 129 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNG----EKV 129 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETT----EEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECC----eEe
Confidence 457999999999999999999999999 9999999988543 599999999999999999999999999 788
Q ss_pred EEEecC
Q 020783 182 RVREYD 187 (321)
Q Consensus 182 ~v~~~~ 187 (321)
.|....
T Consensus 130 ~V~~a~ 135 (156)
T 3n9u_C 130 DVRPAT 135 (156)
T ss_dssp EEEECC
T ss_pred EEEEcC
Confidence 887654
No 325
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=1.2e-12 Score=98.32 Aligned_cols=78 Identities=28% Similarity=0.358 Sum_probs=69.9
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCC----CcEEEEEeCCHHHHHHHHHHhCCCcccCccceeEEEE
Q 020783 108 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 183 (321)
Q Consensus 108 ~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~i~v 183 (321)
...+|||+|||..+++++|+++|.+||.|..+.+..+.. .|||||+|.+.++|+.|++.|||..+.| ..|.+
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~v 82 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSG----RALRV 82 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSS----SCBEE
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCC----cEEEE
Confidence 346899999999999999999999999999999998854 3699999999999999999999999999 77778
Q ss_pred EecCCC
Q 020783 184 REYDSR 189 (321)
Q Consensus 184 ~~~~~~ 189 (321)
......
T Consensus 83 ~~a~~~ 88 (104)
T 1p1t_A 83 DNAASE 88 (104)
T ss_dssp EETTCT
T ss_pred EeCCCc
Confidence 776554
No 326
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.40 E-value=1.4e-12 Score=98.29 Aligned_cols=77 Identities=13% Similarity=0.160 Sum_probs=67.3
Q ss_pred CCcEEEEeCCCCCC------CHHHHHHHHHhcCCcEEEEEEEc--CCCcEEEEEeCCHHHHHHHHHHhCCCcccCcccee
Q 020783 108 SDYRVLVTGLPSSA------SWQDLKDHMRRAGDVCFSQVFRD--RGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRS 179 (321)
Q Consensus 108 ~~~~i~V~nl~~~~------t~~~l~~~f~~~G~i~~~~i~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~ 179 (321)
..++|||+|||..+ ++++|.++|.+||.|..+.+... ...|||||+|.+.++|+.|+..|||..+.| +
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g----~ 89 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDK----Q 89 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECST----T
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCC----C
Confidence 45799999999999 78999999999999999998843 234799999999999999999999999999 6
Q ss_pred -EEEEEecCC
Q 020783 180 -YVRVREYDS 188 (321)
Q Consensus 180 -~i~v~~~~~ 188 (321)
.|.|.....
T Consensus 90 ~~l~V~~a~~ 99 (105)
T 2nlw_A 90 HTFRVNLFTD 99 (105)
T ss_dssp CEEEEECSCC
T ss_pred ceEEEEEcch
Confidence 788776543
No 327
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.39 E-value=7.6e-13 Score=104.31 Aligned_cols=78 Identities=24% Similarity=0.341 Sum_probs=69.5
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCC---cEEEEEEEcCCC---cEEEEEeCCHHHHHHHHHHhCCCcccCccc
Q 020783 104 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGD---VCFSQVFRDRGG---MTGIVDYTSYDDMKYAIRKLDRSEFRNAFS 177 (321)
Q Consensus 104 ~~~~~~~~i~V~nl~~~~t~~~l~~~f~~~G~---i~~~~i~~~~~~---g~afV~f~~~~~a~~A~~~l~g~~~~g~~~ 177 (321)
+......+|||+|||.++++++|+++|.+||. |..|.+..+..+ |||||+|.+.++|++|++ +|+..+.|
T Consensus 39 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~g--- 114 (136)
T 2hgl_A 39 PEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGH--- 114 (136)
T ss_dssp SSCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSS---
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECC---
Confidence 44556789999999999999999999999999 889999987653 699999999999999998 99999999
Q ss_pred eeEEEEEec
Q 020783 178 RSYVRVREY 186 (321)
Q Consensus 178 ~~~i~v~~~ 186 (321)
+.|.|...
T Consensus 115 -r~i~V~~a 122 (136)
T 2hgl_A 115 -RYIEVFKS 122 (136)
T ss_dssp -SEEEEEEC
T ss_pred -EEEEEEEC
Confidence 77888664
No 328
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.39 E-value=9.6e-14 Score=109.86 Aligned_cols=118 Identities=12% Similarity=0.107 Sum_probs=65.2
Q ss_pred cEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcEEEEeCCCCCCCHHH
Q 020783 46 GYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQD 125 (321)
Q Consensus 46 g~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~nl~~~~t~~~ 125 (321)
++||.+|+.++.+..++..+... +.|...--.. +............+|||+|||.++++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~-~gg~~~g~~~------------------g~~~~~~~~~~~~~lfV~nLp~~~te~d 62 (139)
T 2hgn_A 2 GSSHHHHHHSSGLVPRGSHMASM-TGGQQMGRGS------------------GDSEFTVQSTTGHCVHMRGLPYKATEND 62 (139)
T ss_dssp --------------------------------------------------------------CCCCEECCSCCTTCCHHH
T ss_pred CcccccccCccccchhcccchhc-cCCCCCCCCC------------------CCcccCCCCCCCCEEEEeCCCCCCCHHH
Confidence 67888888888887777654432 2222110000 0001112334567899999999999999
Q ss_pred HHHHHHhcCCcEEEEEEEcCC---CcEEEEEeCCHHHHHHHHHHhCCCcccCccceeEEEEEecCC
Q 020783 126 LKDHMRRAGDVCFSQVFRDRG---GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDS 188 (321)
Q Consensus 126 l~~~f~~~G~i~~~~i~~~~~---~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~i~v~~~~~ 188 (321)
|+++|.+|| |..|.|..++. .|||||+|.+.++|++|+ .+|+..+.| +.|.|.....
T Consensus 63 L~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~g----R~i~V~~a~~ 122 (139)
T 2hgn_A 63 IYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQH----RYIELFLNST 122 (139)
T ss_dssp HHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSS----CCCCCEECCC
T ss_pred HHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECC----EEEEEEECCC
Confidence 999999999 67999887754 469999999999999999 899999999 5666655443
No 329
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.39 E-value=1.4e-12 Score=98.89 Aligned_cols=79 Identities=19% Similarity=0.265 Sum_probs=67.7
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCC----CcEEEEEeCCHHHHHHHHHHhCCCcccCccceeEEE
Q 020783 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 182 (321)
Q Consensus 107 ~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~i~ 182 (321)
....+|||+|||.++++++|+++|.+||.|..+.+..+.. .|||||+|.+.++|++|++.+ +..+.| ..|.
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g----~~l~ 97 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDS----KTID 97 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETT----EEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCC----EEEE
Confidence 4567999999999999999999999999999999998754 469999999999999999876 488899 8888
Q ss_pred EEecCCCC
Q 020783 183 VREYDSRR 190 (321)
Q Consensus 183 v~~~~~~r 190 (321)
+.....+.
T Consensus 98 V~~a~~~~ 105 (109)
T 2rs2_A 98 PKVAFPRR 105 (109)
T ss_dssp EEECCCCC
T ss_pred EEEccCCC
Confidence 88776543
No 330
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.39 E-value=7.5e-13 Score=103.90 Aligned_cols=78 Identities=6% Similarity=0.129 Sum_probs=68.5
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEE--EEEEEcCC----CcEEEEEeCCHHHHHHHHHHhCCC----cccCcc
Q 020783 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCF--SQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRS----EFRNAF 176 (321)
Q Consensus 107 ~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~--~~i~~~~~----~g~afV~f~~~~~a~~A~~~l~g~----~~~g~~ 176 (321)
....+|||+|||.++++++|+++|.+||.|.. |.|+.++. .|||||+|.+. +|.+|+..||+. .+.|
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~g-- 97 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDG-- 97 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGG--
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCC--
Confidence 45679999999999999999999999999976 89988763 37999999999 999999999999 9999
Q ss_pred ceeEEEEEecCCC
Q 020783 177 SRSYVRVREYDSR 189 (321)
Q Consensus 177 ~~~~i~v~~~~~~ 189 (321)
+.|.|......
T Consensus 98 --r~l~V~~a~~~ 108 (131)
T 2m2b_A 98 --KTINVEFAKGS 108 (131)
T ss_dssp --CCCCCEECCCS
T ss_pred --EEEEEEECCCC
Confidence 66777766543
No 331
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.39 E-value=2e-12 Score=93.60 Aligned_cols=74 Identities=16% Similarity=0.241 Sum_probs=63.5
Q ss_pred CCCcEEEEeCCCCCCCHHH----HHHHHHhc-CCcEEEEEEEcCCCcEEEEEeCCHHHHHHHHHHhCCCcccCccceeEE
Q 020783 107 RSDYRVLVTGLPSSASWQD----LKDHMRRA-GDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 181 (321)
Q Consensus 107 ~~~~~i~V~nl~~~~t~~~----l~~~f~~~-G~i~~~~i~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~i 181 (321)
+..+.|||.|||..+++++ |.++|.+| |+|..|. +|+|||+|.+.++|+.|++.|+|..+.| +.|
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt------gG~AfV~F~~~esA~~A~~~l~G~~l~g----r~i 76 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSIT------GCSAILRFINQDSAERAQKRMENEDVFG----NRI 76 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECC------TTCEEEEESSHHHHHHHHHHHTTCCSSS----SCC
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEe------cCEEEEEECCHHHHHHHHHHhcCCccCC----ceE
Confidence 3444599999999999887 55899999 5999982 3899999999999999999999999999 778
Q ss_pred EEEecCCCC
Q 020783 182 RVREYDSRR 190 (321)
Q Consensus 182 ~v~~~~~~r 190 (321)
++......+
T Consensus 77 ~v~~A~~~s 85 (96)
T 2diu_A 77 IVSFTPKNR 85 (96)
T ss_dssp EEESSCCSC
T ss_pred EEEecCCCc
Confidence 887766553
No 332
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.39 E-value=6.7e-13 Score=98.17 Aligned_cols=79 Identities=13% Similarity=0.158 Sum_probs=67.6
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCCCcEEEEEeCCHHHHHHHHHHhCCCcccCccceeEEEEEe
Q 020783 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 185 (321)
Q Consensus 106 ~~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~i~v~~ 185 (321)
.....+|||+|||..+++++|+++|.+||.|..+ .......|||||+|.+.++|+.|++.||+..+.| ..|.+..
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~v~~ 87 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDG----RSVSLYY 87 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETT----EEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC----eEEEEEE
Confidence 3456799999999999999999999999998877 2222334799999999999999999999999999 8888887
Q ss_pred cCCC
Q 020783 186 YDSR 189 (321)
Q Consensus 186 ~~~~ 189 (321)
....
T Consensus 88 a~~~ 91 (96)
T 1fjc_A 88 TGEK 91 (96)
T ss_dssp CSSS
T ss_pred cCCC
Confidence 6544
No 333
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.39 E-value=1.8e-12 Score=99.12 Aligned_cols=76 Identities=18% Similarity=0.239 Sum_probs=68.6
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCC----CcEEEEEeCCHHHHHHHHHHhCCCcccCccceeEEEE
Q 020783 108 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 183 (321)
Q Consensus 108 ~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~i~v 183 (321)
...+|||+|||..+++++|+++|.+||.|..+.+..+.. .|||||+|.+.++|++|+ .||+..+.| ..|.|
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g----~~l~V 98 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLG----VPIIV 98 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETT----EEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCC----eEEEE
Confidence 356999999999999999999999999999999997654 469999999999999999 999999999 78888
Q ss_pred EecCC
Q 020783 184 REYDS 188 (321)
Q Consensus 184 ~~~~~ 188 (321)
.....
T Consensus 99 ~~a~~ 103 (114)
T 2cq4_A 99 QASQA 103 (114)
T ss_dssp EEHHH
T ss_pred EecCC
Confidence 77544
No 334
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.39 E-value=5.1e-12 Score=96.49 Aligned_cols=81 Identities=16% Similarity=0.256 Sum_probs=69.6
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCCC---cEEEEEeCCHHHHHHHHHHhCCCcccCcc----cee
Q 020783 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG---MTGIVDYTSYDDMKYAIRKLDRSEFRNAF----SRS 179 (321)
Q Consensus 107 ~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~---g~afV~f~~~~~a~~A~~~l~g~~~~g~~----~~~ 179 (321)
....+|||+|||..+++++|+++|.+||.|..+.+..+..+ +||||+|.+.++|+.|++.|||..+.+.. ...
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~ 102 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTE 102 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCC
Confidence 45679999999999999999999999999999999988632 69999999999999999999999997643 235
Q ss_pred EEEEEecC
Q 020783 180 YVRVREYD 187 (321)
Q Consensus 180 ~i~v~~~~ 187 (321)
.|.+....
T Consensus 103 ~l~v~~a~ 110 (114)
T 1x5o_A 103 PLLCKFSG 110 (114)
T ss_dssp CBEEEECC
T ss_pred ceeEEccC
Confidence 56666554
No 335
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.39 E-value=5.2e-13 Score=94.07 Aligned_cols=69 Identities=22% Similarity=0.317 Sum_probs=61.9
Q ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCC----CcEEEEEeCCHHHHHHHHHHhCCCcccCccceeEEEEE
Q 020783 111 RVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVR 184 (321)
Q Consensus 111 ~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~i~v~ 184 (321)
+|||+|||.++++++|+++|.+||+|..+.+..++. .|||||+|.+.++|++|++ +|+..+.| ..|.+.
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g----~~l~v~ 73 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINN----KMVECK 73 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSS----CCCEEE
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECC----EEEEEE
Confidence 489999999999999999999999999999987753 4699999999999999996 99999999 555554
No 336
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.38 E-value=2.9e-12 Score=99.61 Aligned_cols=80 Identities=18% Similarity=0.163 Sum_probs=68.6
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCCCcE-EEEEeCCHHHHHHHHHHhCCCcccCccceeEEEEEe
Q 020783 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMT-GIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 185 (321)
Q Consensus 107 ~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~-afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~i~v~~ 185 (321)
..-..|+|+||+..+++++|.++|.+||+|..|.+.... +++ |||+|.+.++|+.|++.|||..+.|. .+.|++..
T Consensus 26 s~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~-~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~--~~~LrI~~ 102 (130)
T 3zzy_A 26 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-NQFQALLQYADPVSAQHAKLSLDGQNIYNA--CCTLRIDF 102 (130)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET-TEEEEEEEESCHHHHHHHHHHHTTCEEETT--EEEEEEEE
T ss_pred CceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC-CCcEEEEEECCHHHHHHHHHHcCCCeecCC--CcEEEEEe
Confidence 344578899999999999999999999999999988765 455 99999999999999999999999873 25677777
Q ss_pred cCCC
Q 020783 186 YDSR 189 (321)
Q Consensus 186 ~~~~ 189 (321)
.+..
T Consensus 103 ak~~ 106 (130)
T 3zzy_A 103 SKLT 106 (130)
T ss_dssp CSCS
T ss_pred cCCC
Confidence 6544
No 337
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.38 E-value=1.1e-12 Score=99.77 Aligned_cols=79 Identities=15% Similarity=0.117 Sum_probs=63.9
Q ss_pred CCCcEEEE--eCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCCCcEEEEEeCCHHHHHHHHHHhCCCcc-cCccceeEEEE
Q 020783 107 RSDYRVLV--TGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEF-RNAFSRSYVRV 183 (321)
Q Consensus 107 ~~~~~i~V--~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~-~g~~~~~~i~v 183 (321)
.+..+||| +||+.++++++|+++|.+||.|..+.+.. ..|||||+|.+.++|++|++.|||..+ ..-..+..+.+
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~--~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v 100 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP--NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYL 100 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT--TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEE
Confidence 34568999 77999999999999999999999988864 357999999999999999999999987 21101255666
Q ss_pred EecC
Q 020783 184 REYD 187 (321)
Q Consensus 184 ~~~~ 187 (321)
....
T Consensus 101 ~~a~ 104 (114)
T 2cq2_A 101 NFVE 104 (114)
T ss_dssp EEES
T ss_pred Eecc
Confidence 5543
No 338
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.38 E-value=2.8e-12 Score=97.15 Aligned_cols=79 Identities=18% Similarity=0.275 Sum_probs=68.5
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCC-cEEEEEE-EcC----CCcEEEEEeCCHHHHHHHHHHhC--CCcccCccce
Q 020783 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGD-VCFSQVF-RDR----GGMTGIVDYTSYDDMKYAIRKLD--RSEFRNAFSR 178 (321)
Q Consensus 107 ~~~~~i~V~nl~~~~t~~~l~~~f~~~G~-i~~~~i~-~~~----~~g~afV~f~~~~~a~~A~~~l~--g~~~~g~~~~ 178 (321)
...++|||+|||..+++++|+++|.+||. |..+.+. .+. ..|||||+|.+.++|+.|++.|+ +..+.|
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g---- 81 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWG---- 81 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTT----
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecC----
Confidence 34679999999999999999999999998 9999987 443 34799999999999999999996 589999
Q ss_pred eEEEEEecCCC
Q 020783 179 SYVRVREYDSR 189 (321)
Q Consensus 179 ~~i~v~~~~~~ 189 (321)
..|.|......
T Consensus 82 ~~l~V~~a~~~ 92 (109)
T 2dis_A 82 HQIAVDWAEPE 92 (109)
T ss_dssp BCCEEEESCSS
T ss_pred CeEEEEEcCCC
Confidence 77888776554
No 339
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.38 E-value=1.9e-12 Score=93.82 Aligned_cols=71 Identities=21% Similarity=0.337 Sum_probs=63.9
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhc----C-------CcEEEEEEEcCCCcEEEEEeCCHHHHHHHHHHhCCCcccCc
Q 020783 107 RSDYRVLVTGLPSSASWQDLKDHMRRA----G-------DVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNA 175 (321)
Q Consensus 107 ~~~~~i~V~nl~~~~t~~~l~~~f~~~----G-------~i~~~~i~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 175 (321)
....+|||+|||.++++++|+++|.+| | .|..+.+..+ .+||||+|.+.++|+.|+ .||+..+.|
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~--kg~afV~f~~~~~a~~A~-~l~g~~~~g- 79 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD--KNFAFLEFRSVDETTQAM-AFDGIIFQG- 79 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS--SSEEEEEESSHHHHHHHG-GGTTCEETT-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC--CcEEEEEcCCHHHHHHHH-hcCCCEECC-
Confidence 345799999999999999999999999 8 8999988765 579999999999999999 999999999
Q ss_pred cceeEEEEE
Q 020783 176 FSRSYVRVR 184 (321)
Q Consensus 176 ~~~~~i~v~ 184 (321)
+.|.+.
T Consensus 80 ---~~l~V~ 85 (87)
T 2hzc_A 80 ---QSLKIR 85 (87)
T ss_dssp ---EECEEE
T ss_pred ---eEEEEe
Confidence 666664
No 340
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.37 E-value=6e-13 Score=94.16 Aligned_cols=69 Identities=16% Similarity=0.266 Sum_probs=62.3
Q ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCC----CcEEEEEeCCHHHHHHHHHHhCCCcccCccceeEEEEE
Q 020783 111 RVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVR 184 (321)
Q Consensus 111 ~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~i~v~ 184 (321)
+|||+|||.++++++|+++|.+||+|..+.+..++. .|||||+|.+.++|+.|++.++ ..+.| ..|.+.
T Consensus 2 ~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g----~~l~v~ 74 (77)
T 1uaw_A 2 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDS----KTIDPK 74 (77)
T ss_dssp CEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSS----CCCEEE
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCC----EEEEEE
Confidence 699999999999999999999999999999988754 4699999999999999999999 99999 555554
No 341
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.37 E-value=1.1e-12 Score=95.52 Aligned_cols=75 Identities=21% Similarity=0.307 Sum_probs=67.1
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCCCcEEEEEeCCHHHHHHHHHHhCCCcccCccceeEEEEEecC
Q 020783 108 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYD 187 (321)
Q Consensus 108 ~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~i~v~~~~ 187 (321)
...+|||+|||.++++++|+++|.+| .|..+.+. ...|||||+|.+.++|++|++.|||..+.| +.|.+....
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~--~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g----~~l~V~~a~ 76 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD--RNKRTAFVTLLNGEQAQNAIQMFHQYSFRG----KDLIVQLQP 76 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE--GGGTEEEECCSCHHHHHHHHHHHTTEEETT----EEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe--CCCcEEEEEECCHHHHHHHHHHhCCCeECC----cEEEEEEcC
Confidence 34689999999999999999999999 99999885 556799999999999999999999999999 888887764
Q ss_pred CC
Q 020783 188 SR 189 (321)
Q Consensus 188 ~~ 189 (321)
..
T Consensus 77 ~~ 78 (88)
T 1wg1_A 77 TD 78 (88)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 342
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.37 E-value=1.3e-12 Score=97.51 Aligned_cols=66 Identities=21% Similarity=0.228 Sum_probs=62.1
Q ss_pred CcEEEEeCCCC------CCCHHHHHHHHHhcCCcEEEEEEEcCC----CcEEEEEeCCHHHHHHHHHHhCCCcccC
Q 020783 109 DYRVLVTGLPS------SASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRN 174 (321)
Q Consensus 109 ~~~i~V~nl~~------~~t~~~l~~~f~~~G~i~~~~i~~~~~----~g~afV~f~~~~~a~~A~~~l~g~~~~g 174 (321)
+++|||+|||. ++++++|.++|.+||.|..+.++.++. .|||||+|.+.++|++|++.|||..+.|
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g 81 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDL 81 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSS
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCC
Confidence 56899999999 999999999999999999999998875 3699999999999999999999999998
No 343
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.37 E-value=3.5e-13 Score=100.65 Aligned_cols=78 Identities=18% Similarity=0.326 Sum_probs=65.4
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcC-----CCcEEEEEeCCHHHHHHHHHHhCCCcccCcccee
Q 020783 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDR-----GGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRS 179 (321)
Q Consensus 105 ~~~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~ 179 (321)
.....++|||+|||.++++++|+++|.+|| |..+.+..+. ..|||||+|.+.++|++|+ .|||..+.| +
T Consensus 15 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g----~ 88 (100)
T 2j76_E 15 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGN----R 88 (100)
T ss_dssp -----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTT----B
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECC----e
Confidence 345678999999999999999999999999 9999998775 2479999999999999999 999999999 6
Q ss_pred EEEEEecCC
Q 020783 180 YVRVREYDS 188 (321)
Q Consensus 180 ~i~v~~~~~ 188 (321)
.|.|.....
T Consensus 89 ~l~V~~a~~ 97 (100)
T 2j76_E 89 RIRVDVADQ 97 (100)
T ss_dssp CCCCEECCC
T ss_pred EEEEEeccC
Confidence 666665543
No 344
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.36 E-value=1.4e-12 Score=99.79 Aligned_cols=78 Identities=15% Similarity=0.122 Sum_probs=68.2
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCc-EEEEEEEcCC---CcEEEEEeCCHHHHHHHHHHhCCCcccCccceeEE
Q 020783 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDV-CFSQVFRDRG---GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 181 (321)
Q Consensus 106 ~~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i-~~~~i~~~~~---~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~i 181 (321)
.....+|||+|||.++++++|+++|.+||.| ..|.|..+.. .|||||+|.+.++|++|++. |+..+.| +.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~g----r~i 86 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNG----REA 86 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETT----EEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCC----eEE
Confidence 3456799999999999999999999999999 8888887753 47999999999999999976 9999999 788
Q ss_pred EEEecCC
Q 020783 182 RVREYDS 188 (321)
Q Consensus 182 ~v~~~~~ 188 (321)
.|.....
T Consensus 87 ~v~~a~~ 93 (114)
T 2cpy_A 87 FVHVVTL 93 (114)
T ss_dssp EEEEECH
T ss_pred EEEECCH
Confidence 8876543
No 345
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.36 E-value=5.9e-12 Score=94.12 Aligned_cols=79 Identities=20% Similarity=0.292 Sum_probs=66.6
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCC----CcEEEEEeCCHHHHHHHHHHhCCCcccCccceeE
Q 020783 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSY 180 (321)
Q Consensus 105 ~~~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 180 (321)
......+|||+|||..+++++|+++|..|+ .+.++.+.. .+||||+|.+.++|++|++.||+..+.| ..
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~ 83 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDG----NK 83 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETT----EE
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECC----eE
Confidence 345678999999999999999999999874 455655543 3699999999999999999999999999 78
Q ss_pred EEEEecCCCC
Q 020783 181 VRVREYDSRR 190 (321)
Q Consensus 181 i~v~~~~~~r 190 (321)
|.|.......
T Consensus 84 l~V~~a~~~~ 93 (102)
T 2fc8_A 84 VTLDWAKPKG 93 (102)
T ss_dssp CEEEECCCCC
T ss_pred EEEEEecCCC
Confidence 8888876653
No 346
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.35 E-value=4.5e-12 Score=104.65 Aligned_cols=78 Identities=17% Similarity=0.149 Sum_probs=69.0
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcC---CCcEEEEEeCCHHHHHHHHHHhCCCcccCccceeEE
Q 020783 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDR---GGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 181 (321)
Q Consensus 105 ~~~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~---~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~i 181 (321)
.....++|||+|||..+++++|+++|.+||+|..|.+..+. ..|||||+|.+.++|++|++.||+..+.| ..|
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~G----r~l 159 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDG----RPM 159 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSS----SBC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECC----EEE
Confidence 44567899999999999999999999999999999998875 33799999999999999999999999999 556
Q ss_pred EEEec
Q 020783 182 RVREY 186 (321)
Q Consensus 182 ~v~~~ 186 (321)
.|...
T Consensus 160 ~V~~a 164 (177)
T 2f3j_A 160 DIQLV 164 (177)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 66544
No 347
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.34 E-value=6.2e-13 Score=97.14 Aligned_cols=74 Identities=27% Similarity=0.351 Sum_probs=64.7
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCC----CcEEEEEeCCHHHHHHHHHHhCCCcccCccceeEEEEEe
Q 020783 110 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 185 (321)
Q Consensus 110 ~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~i~v~~ 185 (321)
++|||+|||.++++++|+++|.+||+|..+.+..+.. .|||||+|.+.+ |..|+..|||..+.| ..|.+..
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g----~~l~V~~ 76 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMG----RTIRVTE 76 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSS----SSCSEEE
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECC----eEEEEEE
Confidence 4799999999999999999999999999999987753 479999999999 999999999999999 5566655
Q ss_pred cCC
Q 020783 186 YDS 188 (321)
Q Consensus 186 ~~~ 188 (321)
...
T Consensus 77 a~~ 79 (90)
T 2ki2_A 77 ANP 79 (90)
T ss_dssp C--
T ss_pred cCC
Confidence 443
No 348
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.34 E-value=5.4e-12 Score=94.18 Aligned_cols=77 Identities=16% Similarity=0.198 Sum_probs=65.4
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEE----cCCCcEEEEEeCCHHHHHHHHHHhCCCcccCccceeEEE
Q 020783 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFR----DRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 182 (321)
Q Consensus 107 ~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~----~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~i~ 182 (321)
....+|||+|||.++++++|+++|.+||.|.. .++. ....|||||+|.+.++|++|++ ||+..+.| ..|.
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g----~~l~ 88 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFG----NEIK 88 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTT----BCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECC----cEEE
Confidence 35679999999999999999999999998876 2222 3456799999999999999998 99999999 7788
Q ss_pred EEecCCC
Q 020783 183 VREYDSR 189 (321)
Q Consensus 183 v~~~~~~ 189 (321)
|......
T Consensus 89 V~~a~~~ 95 (101)
T 1fj7_A 89 LEKPKGR 95 (101)
T ss_dssp EECCSCC
T ss_pred EEEcCCC
Confidence 8776544
No 349
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.34 E-value=4.6e-12 Score=97.92 Aligned_cols=76 Identities=13% Similarity=0.146 Sum_probs=67.0
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCCCcEEEEEeCCHHHHHHHHHHhCCCcccCccceeEEEEEe
Q 020783 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 185 (321)
Q Consensus 106 ~~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~i~v~~ 185 (321)
.....+|||+|+ ++++++|+++|.+||.|..+.+. ...|||||+|.+.++|+.|++.||+..+.| ..|.|..
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~--~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g----~~l~V~~ 107 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD--PPRNCAFVTYEKMESADQAVAELNGTQVES----VQLKVNI 107 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE--TTTTEEEEECSSHHHHHHHHHHHTTCBCSS----CBCEEEE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe--CCCCEEEEEECCHHHHHHHHHHhCCCEECC----eEEEEEE
Confidence 345789999996 69999999999999999999986 556799999999999999999999999999 7777877
Q ss_pred cCCC
Q 020783 186 YDSR 189 (321)
Q Consensus 186 ~~~~ 189 (321)
....
T Consensus 108 a~~~ 111 (121)
T 2bz2_A 108 ARKQ 111 (121)
T ss_dssp CCSS
T ss_pred eCCC
Confidence 6554
No 350
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.33 E-value=9.4e-13 Score=99.56 Aligned_cols=76 Identities=18% Similarity=0.229 Sum_probs=66.4
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCC---cEEEEEEEcCC---CcEEEEEeCCHHHHHHHHHHhCCCcccCcccee
Q 020783 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGD---VCFSQVFRDRG---GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRS 179 (321)
Q Consensus 106 ~~~~~~i~V~nl~~~~t~~~l~~~f~~~G~---i~~~~i~~~~~---~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~ 179 (321)
.....+|||+|||.++++++|+++|..||. |..+.+..+.. .|||||+|.+.++|++|+. +|+..+.| +
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~g----r 82 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQ----R 82 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSS----S
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCC----e
Confidence 456679999999999999999999999988 89999987754 4699999999999999998 99999999 5
Q ss_pred EEEEEec
Q 020783 180 YVRVREY 186 (321)
Q Consensus 180 ~i~v~~~ 186 (321)
.|.|...
T Consensus 83 ~i~V~~a 89 (107)
T 2lmi_A 83 YVEVYEI 89 (107)
T ss_dssp CCCCEEC
T ss_pred EEEEEEC
Confidence 6666554
No 351
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.33 E-value=2.7e-12 Score=99.65 Aligned_cols=77 Identities=19% Similarity=0.280 Sum_probs=64.4
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEE-cCC---CcEEEEEeCCHHHHHHHHHHhCCCcccCccceeE
Q 020783 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFR-DRG---GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSY 180 (321)
Q Consensus 105 ~~~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~-~~~---~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 180 (321)
+.....+|||+|||.++++++|+++|.+||.|..+.++. +.. .|||||+|.+.++|++|++ ||+..+.| +.
T Consensus 21 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~g----r~ 95 (124)
T 1wel_A 21 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGN----RF 95 (124)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTT----SC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECC----cE
Confidence 445668999999999999999999999999998744443 332 3699999999999999998 99999999 66
Q ss_pred EEEEec
Q 020783 181 VRVREY 186 (321)
Q Consensus 181 i~v~~~ 186 (321)
|.|...
T Consensus 96 i~V~~a 101 (124)
T 1wel_A 96 IQVHPI 101 (124)
T ss_dssp BEEEEE
T ss_pred EEEEEC
Confidence 666554
No 352
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.32 E-value=6.1e-12 Score=100.14 Aligned_cols=79 Identities=15% Similarity=0.122 Sum_probs=67.5
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEE--------EEEEE-cCCCcEEEEEeCCHHHHHHHHHHhCCCcccCccc
Q 020783 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCF--------SQVFR-DRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFS 177 (321)
Q Consensus 107 ~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~--------~~i~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~ 177 (321)
.+..+|||+|||..+++++|.++|.+||.|.. +.+.. ....|||||+|.+.++|..|+..|||..+.|
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g--- 119 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFG--- 119 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETT---
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCC---
Confidence 34579999999999999999999999999875 33333 3455899999999999999999999999999
Q ss_pred eeEEEEEecCCC
Q 020783 178 RSYVRVREYDSR 189 (321)
Q Consensus 178 ~~~i~v~~~~~~ 189 (321)
..|.|......
T Consensus 120 -~~l~V~~a~~~ 130 (143)
T 3egn_A 120 -KPMVVQFARSA 130 (143)
T ss_dssp -EECEEEECCCS
T ss_pred -cEEEEEECCCC
Confidence 88888877554
No 353
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.32 E-value=6.8e-12 Score=91.53 Aligned_cols=76 Identities=11% Similarity=0.086 Sum_probs=60.2
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCCCcEEEEEeCCHHHHHHHHHHhCCCcccCccceeEEEEEe
Q 020783 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 185 (321)
Q Consensus 106 ~~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~i~v~~ 185 (321)
..+.++|||+|||.++++++|+++|++||.|..+.+..+ ..|||||+|.+.++|++ +++..+.+. ...+.+..
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-srGfaFV~F~~~~~A~~----~~~~~~~~~--g~~v~v~~ 80 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-FRAFAFVTFADDKVAQS----LCGEDLIIK--GISVHISN 80 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-CCSEEEEEESCHHHHHH----HTTCEEEET--TEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-CCCEEEEEECCHHHHHH----HcCCCcccC--CEEEEEEE
Confidence 455679999999999999999999999999999999875 56799999999999983 566665421 16777776
Q ss_pred cCC
Q 020783 186 YDS 188 (321)
Q Consensus 186 ~~~ 188 (321)
...
T Consensus 81 a~~ 83 (89)
T 3d2w_A 81 AEP 83 (89)
T ss_dssp CC-
T ss_pred cCC
Confidence 554
No 354
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.31 E-value=3e-12 Score=99.10 Aligned_cols=75 Identities=15% Similarity=0.177 Sum_probs=64.6
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCc----EEEEEEEcCCC---cEEEEEeCCHHHHHHHHHHhCCCcccCcccee
Q 020783 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDV----CFSQVFRDRGG---MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRS 179 (321)
Q Consensus 107 ~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i----~~~~i~~~~~~---g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~ 179 (321)
....+|||+|||.++++++|+++|.+||.| ..|.|..+..+ |||||+|.+.++|++|++. |+..+.| +
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~g----R 95 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGK----R 95 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSS----C
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCC----e
Confidence 456799999999999999999999999975 68888877543 6999999999999999976 9999998 6
Q ss_pred EEEEEec
Q 020783 180 YVRVREY 186 (321)
Q Consensus 180 ~i~v~~~ 186 (321)
+|.|...
T Consensus 96 ~i~V~~a 102 (123)
T 2dha_A 96 YIELFRS 102 (123)
T ss_dssp EECCEEE
T ss_pred EEEEEEC
Confidence 7776554
No 355
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.31 E-value=6e-12 Score=108.22 Aligned_cols=76 Identities=17% Similarity=0.189 Sum_probs=67.5
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcC--CcEEEEEEEcCCC----cEEEEEeCCHHHHHHHHHHhCCCcccCccceeEE
Q 020783 108 SDYRVLVTGLPSSASWQDLKDHMRRAG--DVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 181 (321)
Q Consensus 108 ~~~~i~V~nl~~~~t~~~l~~~f~~~G--~i~~~~i~~~~~~----g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~i 181 (321)
..++|||+||+..+++++|+++|.+|| .|..|.|+.+... |||||+|.+.++|++|++.||+..+.| +.|
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~G----r~l 142 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHG----QNP 142 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTT----BCC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECC----EEe
Confidence 456899999999999999999999999 9999999988543 599999999999999999999999999 677
Q ss_pred EEEecC
Q 020783 182 RVREYD 187 (321)
Q Consensus 182 ~v~~~~ 187 (321)
.|....
T Consensus 143 ~V~~a~ 148 (229)
T 3q2s_C 143 VVTPVN 148 (229)
T ss_dssp EEEECC
T ss_pred EEEECC
Confidence 777543
No 356
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.30 E-value=1.8e-12 Score=91.24 Aligned_cols=64 Identities=11% Similarity=0.161 Sum_probs=58.0
Q ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCC----CcEEEEEeCCHHHHHHHHHHhCCCcccCc
Q 020783 111 RVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNA 175 (321)
Q Consensus 111 ~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~----~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 175 (321)
+|||+|||.++++++|+++|.+||+|..+.+..++. .|||||+|.+.++|+.|++ +++..+.|+
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~ 68 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLS 68 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTB
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCE
Confidence 489999999999999999999999999999987643 4799999999999999997 488889983
No 357
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.28 E-value=6.7e-12 Score=93.86 Aligned_cols=74 Identities=18% Similarity=0.283 Sum_probs=64.6
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCCC---cEEEEEeCCHHHHHHHHHHhCCCcccCccceeEEEE
Q 020783 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG---MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 183 (321)
Q Consensus 107 ~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~---g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~i~v 183 (321)
....+|||+|||.++++++|.++|.+||.|..+.+..+..+ |||||+|.+.++|+.|+. ++..+.| ..|.+
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g----~~l~v 80 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHG----KKLKL 80 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETT----EECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECC----EEEEE
Confidence 34579999999999999999999999999999999998633 699999999999999997 8888888 56665
Q ss_pred Eec
Q 020783 184 REY 186 (321)
Q Consensus 184 ~~~ 186 (321)
...
T Consensus 81 ~~a 83 (102)
T 2xs2_A 81 GPA 83 (102)
T ss_dssp EEE
T ss_pred EEC
Confidence 443
No 358
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=98.95 E-value=3e-13 Score=103.79 Aligned_cols=79 Identities=20% Similarity=0.304 Sum_probs=69.4
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEE--------EEEEEcCC----CcEEEEEeCCHHHHHHHHHHhCCCcccC
Q 020783 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCF--------SQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRN 174 (321)
Q Consensus 107 ~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~--------~~i~~~~~----~g~afV~f~~~~~a~~A~~~l~g~~~~g 174 (321)
.+..+|||+|||..+++++|+++|.+||.|.. +.+..++. .+||||+|.+.++|++|++.||+..+.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 34568999999999999999999999999998 88877643 4699999999999999999999999999
Q ss_pred ccceeEEEEEecCCC
Q 020783 175 AFSRSYVRVREYDSR 189 (321)
Q Consensus 175 ~~~~~~i~v~~~~~~ 189 (321)
..|.|......
T Consensus 85 ----~~l~V~~a~~~ 95 (116)
T 2lcw_A 85 ----NPIKVSFATRR 95 (116)
Confidence 77888776554
No 359
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.28 E-value=4.7e-12 Score=92.07 Aligned_cols=73 Identities=11% Similarity=0.125 Sum_probs=60.5
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCCCcEEEEEeCCHHHHHHHHHHhCCCcc--cCccceeEEEEEe
Q 020783 108 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEF--RNAFSRSYVRVRE 185 (321)
Q Consensus 108 ~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~~~~~i~v~~ 185 (321)
...+|||+|||.++++++|+++|.+||+|..+.+..+ ..|||||+|.+.++|++| ++..+ .| ..|.+..
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~~----~~~~~~~~g----~~l~v~~ 74 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-FRAFAFVTFADDQIAQSL----CGEDLIIKG----ISVHISN 74 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-CCSCCEEECSCHHHHHHT----TTCEEEETT----EEEEEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-CCCEEEEEECCHHHHHHH----hcCCceeCC----EEEEEEe
Confidence 3569999999999999999999999999999999866 567999999999999754 44444 55 7777776
Q ss_pred cCCC
Q 020783 186 YDSR 189 (321)
Q Consensus 186 ~~~~ 189 (321)
....
T Consensus 75 a~~~ 78 (88)
T 1wf0_A 75 AEPK 78 (88)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 6554
No 360
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.28 E-value=5.2e-12 Score=98.05 Aligned_cols=75 Identities=15% Similarity=0.190 Sum_probs=63.1
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCcE--EEEEEEcCC---CcEEEEEeCCHHHHHHHHHHhCCCcccCcccee
Q 020783 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVC--FSQVFRDRG---GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRS 179 (321)
Q Consensus 105 ~~~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~--~~~i~~~~~---~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~ 179 (321)
......+|||+|||.++++++|+++|.+| .|. .|.|..++. .|||||+|.+.++|++|++ +++..+.| +
T Consensus 38 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~g----R 111 (126)
T 2hgm_A 38 DSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG-KHKERIGH----R 111 (126)
T ss_dssp CSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHT-TTTCCBTT----B
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHH-HCCCEECC----E
Confidence 34456789999999999999999999999 677 888887754 4799999999999999997 47799999 5
Q ss_pred EEEEEe
Q 020783 180 YVRVRE 185 (321)
Q Consensus 180 ~i~v~~ 185 (321)
.|.|..
T Consensus 112 ~I~V~~ 117 (126)
T 2hgm_A 112 YIEVFK 117 (126)
T ss_dssp CCCCEE
T ss_pred EEEEEE
Confidence 555544
No 361
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.25 E-value=7.2e-11 Score=89.87 Aligned_cols=81 Identities=16% Similarity=0.286 Sum_probs=67.5
Q ss_pred CCCCcEEEEeCCCCCCC-----------HHHHHHHHHhcCCcEEEEEEEcCCCcEEEEEeCCHHHHHHHHHHhCCCcccC
Q 020783 106 RRSDYRVLVTGLPSSAS-----------WQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRN 174 (321)
Q Consensus 106 ~~~~~~i~V~nl~~~~t-----------~~~l~~~f~~~G~i~~~~i~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 174 (321)
..+..+|+|.||..... +++|+++|.+||.|..+.|......|||||+|.+.++|+.|+..|||..+.|
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 91 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGG 91 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEETT
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 34567899999954432 5799999999999999977544456899999999999999999999999999
Q ss_pred ccceeEEEEEecCCCC
Q 020783 175 AFSRSYVRVREYDSRR 190 (321)
Q Consensus 175 ~~~~~~i~v~~~~~~r 190 (321)
+.|.+.......
T Consensus 92 ----r~l~v~~a~~~~ 103 (112)
T 2dit_A 92 ----RQITAQAWDGTT 103 (112)
T ss_dssp ----EECEEEECCSCC
T ss_pred ----cEEEEEEeCCCC
Confidence 888888876543
No 362
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.24 E-value=3.2e-11 Score=92.43 Aligned_cols=76 Identities=14% Similarity=0.187 Sum_probs=66.8
Q ss_pred cEEEEeCC----CCCCCHHHHHHHHHhcCCcEEEEEEEcCCC----cEEEEEeCC----HHH----HHHHHH--HhCCCc
Q 020783 110 YRVLVTGL----PSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTS----YDD----MKYAIR--KLDRSE 171 (321)
Q Consensus 110 ~~i~V~nl----~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~----g~afV~f~~----~~~----a~~A~~--~l~g~~ 171 (321)
..|+|+|| |+.+++++|+++|..||+|..+.+..|+.+ |||||+|.+ +++ |.+|+. .++|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 58999999 999999999999999999999999999887 599999996 433 789988 789999
Q ss_pred ccCccceeEEEEEecCCC
Q 020783 172 FRNAFSRSYVRVREYDSR 189 (321)
Q Consensus 172 ~~g~~~~~~i~v~~~~~~ 189 (321)
++| +.|+|...+..
T Consensus 83 I~G----r~irV~ln~~g 96 (136)
T 2j8a_A 83 IMG----FKFEVILNKHS 96 (136)
T ss_dssp ETT----EEEEEEECCTT
T ss_pred ecC----cEEEEEECccc
Confidence 999 88999876544
No 363
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.24 E-value=3.6e-11 Score=91.93 Aligned_cols=76 Identities=17% Similarity=0.185 Sum_probs=67.3
Q ss_pred CCCCeEEEcCCCCC-CCHHHHHHHHhccCCeeEEEEccCCCCCcEEEEEEcC-HHHHHHHHHhcC--CcccCCceEEEEE
Q 020783 4 RSSRTLYVGNLPGD-TRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFED-YRDAEDAIRGRD--GYNFDGYRLRVEL 79 (321)
Q Consensus 4 ~~~~~l~V~nLp~~-~te~~L~~~F~~~G~I~~v~l~~~~~~kg~aFVeF~~-~e~A~~A~~~l~--g~~i~g~~i~V~~ 79 (321)
.+.+.|||+||+++ ++.++|+++|++||+|..|.+... ...|||+|.+ +++|++|+..|| |..|.|..+.+++
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g---~~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~ev 92 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRG---AKEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEV 92 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTT---CSEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEE
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecC---CCEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEE
Confidence 47789999999999 999999999999999999999754 3379999999 899999999994 7889999999887
Q ss_pred ccC
Q 020783 80 AHG 82 (321)
Q Consensus 80 a~~ 82 (321)
...
T Consensus 93 L~G 95 (121)
T 1owx_A 93 LEG 95 (121)
T ss_dssp CCH
T ss_pred CCC
Confidence 553
No 364
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=1.7e-11 Score=93.61 Aligned_cols=60 Identities=15% Similarity=0.205 Sum_probs=53.2
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcC-------CCcEEEEEeCCHHHHHHHHHHh
Q 020783 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDR-------GGMTGIVDYTSYDDMKYAIRKL 167 (321)
Q Consensus 107 ~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~-------~~g~afV~f~~~~~a~~A~~~l 167 (321)
....+|||+|||.++++++|+++|.+||+|. +.+..+. ..|||||+|.+.++|++|++.|
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~ 72 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDAC 72 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHS
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhh
Confidence 3456899999999999999999999999999 7776543 3579999999999999999998
No 365
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.22 E-value=8.3e-11 Score=88.39 Aligned_cols=76 Identities=14% Similarity=0.186 Sum_probs=64.9
Q ss_pred CCcEEEEeCCCC-----CCCHHHHHHHHHhcCCcEEEEEEEcC-----CCcEEEEEeCCHHHHHHHHHHhCCCcccCccc
Q 020783 108 SDYRVLVTGLPS-----SASWQDLKDHMRRAGDVCFSQVFRDR-----GGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFS 177 (321)
Q Consensus 108 ~~~~i~V~nl~~-----~~t~~~l~~~f~~~G~i~~~~i~~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~ 177 (321)
+..+|+|.|+.. +-++++|+++|++||.|..+.|..++ ..|+|||+|.+.++|.+|++.|||..+.|
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~G--- 83 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGG--- 83 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETT---
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECC---
Confidence 456899999963 23789999999999999999999864 24799999999999999999999999999
Q ss_pred eeEEEEEecC
Q 020783 178 RSYVRVREYD 187 (321)
Q Consensus 178 ~~~i~v~~~~ 187 (321)
+.|.+....
T Consensus 84 -r~i~v~~a~ 92 (105)
T 2pe8_A 84 -RVVKACFYN 92 (105)
T ss_dssp -EECEEEECC
T ss_pred -cEEEEEEcC
Confidence 777777654
No 366
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.21 E-value=2.5e-10 Score=95.50 Aligned_cols=118 Identities=14% Similarity=0.207 Sum_probs=83.2
Q ss_pred CHHHHHHHHHhc--CCcccCCceEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHH
Q 020783 54 DYRDAEDAIRGR--DGYNFDGYRLRVELAHGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMR 131 (321)
Q Consensus 54 ~~e~A~~A~~~l--~g~~i~g~~i~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~nl~~~~t~~~l~~~f~ 131 (321)
+.+.+..|+... ....+.+....|..... ...+.... .........+|||+|||.++++++|+++|.
T Consensus 63 d~~~I~~Al~~S~~~~lev~ed~~~vrR~~~-~p~p~~~~----------~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~ 131 (193)
T 2voo_A 63 DFNVIVEALSKSKAELMEISEDKTKIRRSPS-KPLPEVTD----------EYKNDVKNRSVYIKGFPTDATLDDIKEWLE 131 (193)
T ss_dssp CHHHHHHHHHTCSSCCEEECTTSSEEEECTT-SCCCCCCH----------HHHHHHHHTEEEEECCCTTCCHHHHHHHHT
T ss_pred CHHHHHHHHhhcccceEEEecccceEEeccc-CCCcccch----------hhhhccccCEEEecCCCCcCCHHHHHHHHh
Confidence 667788888866 55555555555544311 10000000 000011346899999999999999999999
Q ss_pred hcCCcEEEEEEEcCCC---cEEEEEeCCHHHHHHHHHHhCCCcccCccceeEEEEEecC
Q 020783 132 RAGDVCFSQVFRDRGG---MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYD 187 (321)
Q Consensus 132 ~~G~i~~~~i~~~~~~---g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~i~v~~~~ 187 (321)
+||.|..+.+..+..+ |||||+|.+.++|+.|+..++ ..+.| +.|.|....
T Consensus 132 ~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~G----r~l~V~~~~ 185 (193)
T 2voo_A 132 DKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPG-QKYKE----TDLLILFKD 185 (193)
T ss_dssp TSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTT-CEETT----EECEEEETT
T ss_pred cCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCC-CeECC----EEEEEEEhH
Confidence 9999999999986543 799999999999999997665 58888 777776543
No 367
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.17 E-value=8e-11 Score=84.47 Aligned_cols=73 Identities=15% Similarity=0.185 Sum_probs=62.9
Q ss_pred CCCCeEEEcCCC----CCCCH----HHHHHHHhccCCeeEEEEccCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceE
Q 020783 4 RSSRTLYVGNLP----GDTRM----REVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRL 75 (321)
Q Consensus 4 ~~~~~l~V~nLp----~~~te----~~L~~~F~~~G~I~~v~l~~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i 75 (321)
-|.-||+|.-.+ .++-+ .+|.+.|.+||+|..+++.. +.+||+|.+.++|.+|+. |||..+.|+.|
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~-----d~~fVtF~d~~sAlaAi~-mnG~~v~Gr~L 78 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVE-----DKMWVTFLEGSSALNVLS-LNGKELLNRTI 78 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECS-----SSEEEEESSHHHHHHGGG-GTTCEETTEEE
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEec-----CCEEEEECChHHHHHHHh-cCCeEeCCeEE
Confidence 467788888876 23444 67999999999999999984 349999999999999999 99999999999
Q ss_pred EEEEccC
Q 020783 76 RVELAHG 82 (321)
Q Consensus 76 ~V~~a~~ 82 (321)
+|+++.+
T Consensus 79 kV~lkt~ 85 (91)
T 2dnr_A 79 TIALKSP 85 (91)
T ss_dssp EEEECCC
T ss_pred EEEeCCC
Confidence 9999774
No 368
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.14 E-value=8.7e-11 Score=100.91 Aligned_cols=79 Identities=13% Similarity=0.193 Sum_probs=67.5
Q ss_pred CCCCCcEEEEeCCCCCC---------CHHHHHHHHHhcCCcEEEEEEEcCCCcEEEEEeCCHHHHHHHHHHhCCCcc---
Q 020783 105 SRRSDYRVLVTGLPSSA---------SWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEF--- 172 (321)
Q Consensus 105 ~~~~~~~i~V~nl~~~~---------t~~~l~~~f~~~G~i~~~~i~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--- 172 (321)
......+|||+||+..+ ++++|+++|.+||+|..|.|+.+ .|||||+|.+.++|+.|++.|+|..+
T Consensus 130 ~~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~--kG~AFV~F~~~~~Ae~A~~am~g~~l~~~ 207 (240)
T 3u1l_A 130 FRKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES--KNCGFVKFKYQANAEFAKEAMSNQTLLLP 207 (240)
T ss_dssp -CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG--GTEEEEEESSHHHHHHHHHHHTTCCCCCT
T ss_pred cccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC--CCEEEEEeCCHHHHHHHHHHhCCCEEecc
Confidence 34567899999999998 79999999999999999999865 56999999999999999999999999
Q ss_pred ---------cCccceeEEEEEecCCC
Q 020783 173 ---------RNAFSRSYVRVREYDSR 189 (321)
Q Consensus 173 ---------~g~~~~~~i~v~~~~~~ 189 (321)
.| ..|.|......
T Consensus 208 ~~~e~~~~~~g----r~L~V~wA~~~ 229 (240)
T 3u1l_A 208 SDKEWDDRREG----TGLLVKWANED 229 (240)
T ss_dssp TSTTGGGGGGS----CCCEEEECC--
T ss_pred ccccccccCCC----CEEEEEEccCC
Confidence 56 66777765443
No 369
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.06 E-value=3.8e-10 Score=84.74 Aligned_cols=74 Identities=20% Similarity=0.172 Sum_probs=62.0
Q ss_pred CcEEEEeCCCC--CCC--------HHHHHHHHHhcCCcEEEEEEEcC------CCcEEEEEeCCHHHHHHHHHHhCCCcc
Q 020783 109 DYRVLVTGLPS--SAS--------WQDLKDHMRRAGDVCFSQVFRDR------GGMTGIVDYTSYDDMKYAIRKLDRSEF 172 (321)
Q Consensus 109 ~~~i~V~nl~~--~~t--------~~~l~~~f~~~G~i~~~~i~~~~------~~g~afV~f~~~~~a~~A~~~l~g~~~ 172 (321)
...|.+.|+-. ++. +++|++.|++||+|..+.|..+. ..|+|||+|.+.++|.+|++.|||..+
T Consensus 5 s~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~f 84 (105)
T 3v4m_A 5 TEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKF 84 (105)
T ss_dssp CSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCEe
Confidence 45788998833 332 46899999999999999998774 347999999999999999999999999
Q ss_pred cCccceeEEEEEec
Q 020783 173 RNAFSRSYVRVREY 186 (321)
Q Consensus 173 ~g~~~~~~i~v~~~ 186 (321)
.| +.|.+...
T Consensus 85 ~G----R~i~v~~~ 94 (105)
T 3v4m_A 85 AN----RVVVTKYC 94 (105)
T ss_dssp TT----EECEEEEE
T ss_pred CC----CEEEEEEe
Confidence 99 77777654
No 370
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.05 E-value=8.3e-10 Score=84.02 Aligned_cols=75 Identities=12% Similarity=0.081 Sum_probs=62.9
Q ss_pred CCcEEEEeCCCCCCC----------HHHHHHHHHhcCCcEEEEEEEcCCCcEEEEEeCCHHHHHHHHHHhCCCcccCccc
Q 020783 108 SDYRVLVTGLPSSAS----------WQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFS 177 (321)
Q Consensus 108 ~~~~i~V~nl~~~~t----------~~~l~~~f~~~G~i~~~~i~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~ 177 (321)
+...|.+.|+-.... +++|++.|.+||.|..+.+..+...|+|||+|.+.++|.+|++.|||..++|
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~G--- 82 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAG--- 82 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETT---
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECC---
Confidence 445788888744322 4588999999999999999877767899999999999999999999999999
Q ss_pred eeEEEEEec
Q 020783 178 RSYVRVREY 186 (321)
Q Consensus 178 ~~~i~v~~~ 186 (321)
+.|.+...
T Consensus 83 -R~i~v~~~ 90 (114)
T 3s6e_A 83 -KMITAAYV 90 (114)
T ss_dssp -EECEEEEE
T ss_pred -EEEEEEEE
Confidence 77777654
No 371
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.05 E-value=6.8e-10 Score=85.07 Aligned_cols=75 Identities=13% Similarity=0.238 Sum_probs=63.0
Q ss_pred CCcEEEEeCCCCC--C---CHHHHHHHHHhcCCcEEEEEEEcCCC--------cEEEEEeCCHHHHHHHHHHhCCCcccC
Q 020783 108 SDYRVLVTGLPSS--A---SWQDLKDHMRRAGDVCFSQVFRDRGG--------MTGIVDYTSYDDMKYAIRKLDRSEFRN 174 (321)
Q Consensus 108 ~~~~i~V~nl~~~--~---t~~~l~~~f~~~G~i~~~~i~~~~~~--------g~afV~f~~~~~a~~A~~~l~g~~~~g 174 (321)
+..+|++.|+-.. + -+++|++.|.+||+|..+.|..+..+ |++||+|.+.++|.+|+..|||..+.|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 4568999998432 2 36899999999999999999987532 799999999999999999999999999
Q ss_pred ccceeEEEEEec
Q 020783 175 AFSRSYVRVREY 186 (321)
Q Consensus 175 ~~~~~~i~v~~~ 186 (321)
+.|.+...
T Consensus 99 ----R~i~v~~~ 106 (118)
T 3ue2_A 99 ----RKVVAEVY 106 (118)
T ss_dssp ----EECEEEEE
T ss_pred ----cEEEEEEc
Confidence 77777654
No 372
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.02 E-value=4.3e-10 Score=101.68 Aligned_cols=66 Identities=17% Similarity=0.134 Sum_probs=58.7
Q ss_pred CCCCcEEEEeC--CCCCCCHHHHHHHHHhcCCcEEEEEEEcCCCcEEEEEeCCHHHHHHHHHHhCCCccc
Q 020783 106 RRSDYRVLVTG--LPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFR 173 (321)
Q Consensus 106 ~~~~~~i~V~n--l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 173 (321)
..+..+|||+| |+..+++++|+++|.+||+|..+.+.. .+|||||+|.+.++|++|++.|||..+.
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~--~kgfaFV~f~~~~~A~~Ai~~lnG~~~~ 82 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP--NKPYSFARYRTTEESKRAYVTLNGKEVV 82 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT--TCSEEEEEESSHHHHHHHHHHTTTCEEE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCccc
Confidence 34556999999 578999999999999999999887754 5679999999999999999999999984
No 373
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.96 E-value=9.7e-09 Score=76.17 Aligned_cols=64 Identities=11% Similarity=0.148 Sum_probs=53.0
Q ss_pred CCCCHHHHHHHHHhcCCcEEEEEEEcCCCcEEEEEeCCHHHHHHHHHHhCCCcccCccceeEEEEEecCCC
Q 020783 119 SSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDSR 189 (321)
Q Consensus 119 ~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~i~v~~~~~~ 189 (321)
..+++++|+++|.+||+|..|.|. ....|||||+|.+.++|+.|++.+++ +.| ..|.|......
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~-~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g----~~l~V~~a~~~ 90 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS-SKKPGTAVVEFATVKAAELAVQNEVG--LVD----NPLKISWLEGQ 90 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE-SSSSSEEEEEESCHHHHHHHHHTCCB--CSS----SBCEEECSSCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc-cCCCCEEEEEECCHHHHHHHHHhcCC--CCC----CeEEEEEccCC
Confidence 568999999999999999999998 35567999999999999999988555 456 66777765444
No 374
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=98.96 E-value=3.4e-10 Score=84.92 Aligned_cols=68 Identities=21% Similarity=0.258 Sum_probs=55.5
Q ss_pred EeCCCCCCCHHHHHHHH------------HhcCCcEEEEEEEcCC---CcEEEEEeCCHHHHHHHHHHhCCCcccCccce
Q 020783 114 VTGLPSSASWQDLKDHM------------RRAGDVCFSQVFRDRG---GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSR 178 (321)
Q Consensus 114 V~nl~~~~t~~~l~~~f------------~~~G~i~~~~i~~~~~---~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~ 178 (321)
+.||+..+++++|++.| ++||+|..+.+..+.. .|||||+|.+.++|++|+..|||..+.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~G---- 95 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNG---- 95 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETT----
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECC----
Confidence 45566666777666555 9999999999998753 4799999999999999999999999999
Q ss_pred eEEEEEe
Q 020783 179 SYVRVRE 185 (321)
Q Consensus 179 ~~i~v~~ 185 (321)
+.|.+..
T Consensus 96 r~i~v~~ 102 (104)
T 1jmt_A 96 QPIHAEL 102 (104)
T ss_dssp EECCEEE
T ss_pred EEEEEEE
Confidence 6666543
No 375
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.95 E-value=1.3e-09 Score=78.56 Aligned_cols=72 Identities=18% Similarity=0.220 Sum_probs=61.4
Q ss_pred CCCCeEEEcCCCCC-----CCH----HHHHHHHhccCCeeEEEEccCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCce
Q 020783 4 RSSRTLYVGNLPGD-----TRM----REVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYR 74 (321)
Q Consensus 4 ~~~~~l~V~nLp~~-----~te----~~L~~~F~~~G~I~~v~l~~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~ 74 (321)
-|.-||+|.-+++. +-+ .+|.+.|.+||+|..+++..+ -+||+|.+.++|.+|+. |||..++|+.
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d-----~~fVtF~d~~sAl~AI~-ldG~~v~Gr~ 86 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQG-----QMLVTFADSHSALSVLD-VDGMKVKGRA 86 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETT-----EEEEECSCSHHHHHHHH-GGGSEETTEE
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecC-----cEEEEEcChHHHHHHHh-cCCeeeCCeE
Confidence 57789999988743 323 568999999999999999743 39999999999999999 9999999999
Q ss_pred EEEEEcc
Q 020783 75 LRVELAH 81 (321)
Q Consensus 75 i~V~~a~ 81 (321)
|+|.+-.
T Consensus 87 L~V~~k~ 93 (95)
T 1ufw_A 87 VKISGPS 93 (95)
T ss_dssp EEEECCC
T ss_pred EEEeccC
Confidence 9998743
No 376
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.89 E-value=2.7e-09 Score=91.09 Aligned_cols=65 Identities=20% Similarity=0.223 Sum_probs=58.5
Q ss_pred CCHHHHHHHHhccCCeeEEEEcc-------CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEccC
Q 020783 18 TRMREVEDLFYKYGPIVDIDLKI-------PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (321)
Q Consensus 18 ~te~~L~~~F~~~G~I~~v~l~~-------~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a~~ 82 (321)
-.+++|.+.|++||.|..+.+.. +++++|++||+|.+.++|.+|+..|||..++|+.|.|.++..
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 45678999999999999999942 347899999999999999999999999999999999999763
No 377
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.88 E-value=6.6e-09 Score=79.34 Aligned_cols=70 Identities=13% Similarity=0.223 Sum_probs=62.3
Q ss_pred CCCCCCcEEEEeCCCCC-CCHHHHHHHHHhcCCcEEEEEEEcCCCcEEEEEeCC-HHHHHHHHHHhC--CCcccCc
Q 020783 104 VSRRSDYRVLVTGLPSS-ASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTS-YDDMKYAIRKLD--RSEFRNA 175 (321)
Q Consensus 104 ~~~~~~~~i~V~nl~~~-~t~~~l~~~f~~~G~i~~~~i~~~~~~g~afV~f~~-~~~a~~A~~~l~--g~~~~g~ 175 (321)
...+.+..|+|+||+.. ++.++|+++|++||+|.+|.+..+.. .|||+|.+ .++|..|+..+| +..+.|.
T Consensus 13 ~~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~--tgfVrf~~~~~~A~~av~~ln~~~~~i~g~ 86 (121)
T 1owx_A 13 LEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK--EGIILFKEKAKEALGKAKDANNGNLQLRNK 86 (121)
T ss_dssp CSCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS--EEEEEESSCHHHHHHHHHHTTTSCBCTTSS
T ss_pred ccccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC--EEEEEECCChHHHHHHHHHhhcCCcEEeCc
Confidence 34567889999999999 99999999999999999999988766 79999999 899999999994 6677773
No 378
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.67 E-value=7.2e-08 Score=69.11 Aligned_cols=73 Identities=18% Similarity=0.144 Sum_probs=59.9
Q ss_pred CCcEEEEeCCCC----CCCH----HHHHHHHHhcCCcEEEEEEEcCCCcEEEEEeCCHHHHHHHHHHhCCCcccCcccee
Q 020783 108 SDYRVLVTGLPS----SASW----QDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRS 179 (321)
Q Consensus 108 ~~~~i~V~nl~~----~~t~----~~l~~~f~~~G~i~~~~i~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~ 179 (321)
+..+|+|.-.+. +.-. .+|.+.|.+||+|..+++..+ .+||+|.+.++|.+|++ |||..+.| +
T Consensus 6 pd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d----~~fVtF~d~~sAlaAi~-mnG~~v~G----r 76 (91)
T 2dnr_A 6 SGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVED----KMWVTFLEGSSALNVLS-LNGKELLN----R 76 (91)
T ss_dssp SSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSS----SEEEEESSHHHHHHGGG-GTTCEETT----E
T ss_pred CCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecC----CEEEEECChHHHHHHHh-cCCeEeCC----e
Confidence 345777776652 2333 578999999999999999988 59999999999999997 99999999 8
Q ss_pred EEEEEecCCC
Q 020783 180 YVRVREYDSR 189 (321)
Q Consensus 180 ~i~v~~~~~~ 189 (321)
.|+|......
T Consensus 77 ~LkV~lkt~d 86 (91)
T 2dnr_A 77 TITIALKSPS 86 (91)
T ss_dssp EEEEEECCCS
T ss_pred EEEEEeCCCC
Confidence 8888876554
No 379
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.56 E-value=3.6e-07 Score=67.15 Aligned_cols=72 Identities=17% Similarity=0.094 Sum_probs=65.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcc-----CCeeEEEEccCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEE
Q 020783 5 SSRTLYVGNLPGDTRMREVEDLFYKY-----GPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (321)
Q Consensus 5 ~~~~l~V~nLp~~~te~~L~~~F~~~-----G~I~~v~l~~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~ 79 (321)
..++|-|-|||..++++.|+.|++.+ |.|..|.+..+ -+=|+|+|.+...|.+|.-.|||..|.|+.|+|.-
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pD---H~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~gT 96 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSD---FNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSGT 96 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETT---TTEEEEECSCHHHHHHHHHHHSSEEETTEEEEEEC
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecC---CCceEEEEccchhhHHHHhhcCCeeecCeEEEecC
Confidence 37899999999999999999999999 99999999643 34599999999999999988999999999999864
No 380
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.53 E-value=3.8e-07 Score=65.69 Aligned_cols=72 Identities=11% Similarity=0.157 Sum_probs=60.0
Q ss_pred CCCcEEEEeCCCCC-----CCH----HHHHHHHHhcCCcEEEEEEEcCCCcEEEEEeCCHHHHHHHHHHhCCCcccCccc
Q 020783 107 RSDYRVLVTGLPSS-----ASW----QDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFS 177 (321)
Q Consensus 107 ~~~~~i~V~nl~~~-----~t~----~~l~~~f~~~G~i~~~~i~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~ 177 (321)
++..+|+|.-++.. +-. .+|.+.|..||+|..+++..+ .+||+|.+.++|.+|++ |||.++.|
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d----~~fVtF~d~~sAl~AI~-ldG~~v~G--- 84 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQG----QMLVTFADSHSALSVLD-VDGMKVKG--- 84 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETT----EEEEECSCSHHHHHHHH-GGGSEETT---
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecC----cEEEEEcChHHHHHHHh-cCCeeeCC---
Confidence 34568888877643 222 568999999999999999988 59999999999999997 99999999
Q ss_pred eeEEEEEecC
Q 020783 178 RSYVRVREYD 187 (321)
Q Consensus 178 ~~~i~v~~~~ 187 (321)
+.|+|....
T Consensus 85 -r~L~V~~k~ 93 (95)
T 1ufw_A 85 -RAVKISGPS 93 (95)
T ss_dssp -EEEEEECCC
T ss_pred -eEEEEeccC
Confidence 888887653
No 381
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.37 E-value=4.5e-06 Score=60.81 Aligned_cols=90 Identities=23% Similarity=0.283 Sum_probs=72.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhc----c-CCeeEEEEccCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEE
Q 020783 3 SRSSRTLYVGNLPGDTRMREVEDLFYK----Y-GPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRV 77 (321)
Q Consensus 3 ~~~~~~l~V~nLp~~~te~~L~~~F~~----~-G~I~~v~l~~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V 77 (321)
+...++|.|.|||+.+.++.|.-+|++ - |+|..+.... +-|+|+|.+.+.|+..++ -....|.+..|.|
T Consensus 5 ~~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~-----~~AvItF~d~~va~rVL~-k~~H~L~~~~LsV 78 (104)
T 2dhx_A 5 SSGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG-----CGGVLTFREPADAERVLA-QADHELHGAQLSL 78 (104)
T ss_dssp CCCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET-----TEEEEEESSHHHHHHHHT-CSCCBSSSSBCEE
T ss_pred ccCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC-----CcEEEEEcChHHHHHHhc-CCcceecCeEEEE
Confidence 456789999999999999999999987 2 5999998862 779999999999999998 4367888899999
Q ss_pred EEccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcEEEEeCCCCCCC
Q 020783 78 ELAHGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSAS 122 (321)
Q Consensus 78 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~nl~~~~t 122 (321)
...... ...++++.+|++.++
T Consensus 79 ~P~~~~------------------------~~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 79 RPAPPR------------------------APARLLLQGLPPGTS 99 (104)
T ss_dssp EECCCC------------------------CCCCCCCCSCCCCCC
T ss_pred EcCCCC------------------------CcceEeeecCCCCCC
Confidence 774432 223677888877764
No 382
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.24 E-value=2.1e-06 Score=72.94 Aligned_cols=61 Identities=16% Similarity=0.274 Sum_probs=52.8
Q ss_pred CHHHHHHHHHhcCCcEEEEEEEcCCC--------cEEEEEeCCHHHHHHHHHHhCCCcccCccceeEEEEEec
Q 020783 122 SWQDLKDHMRRAGDVCFSQVFRDRGG--------MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREY 186 (321)
Q Consensus 122 t~~~l~~~f~~~G~i~~~~i~~~~~~--------g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~i~v~~~ 186 (321)
.+++|.+.|.+||.|..+.+..+... |++||+|.+.++|.+|+..|||..+.| +.|.+...
T Consensus 142 ~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~g----r~i~~~~~ 210 (222)
T 3dxb_A 142 LEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG----RKVVAEVY 210 (222)
T ss_dssp HHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSS----SBCEEEEC
T ss_pred HHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECC----eEEEEEEc
Confidence 46789999999999999999865332 699999999999999999999999999 66666554
No 383
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.13 E-value=5.6e-06 Score=60.63 Aligned_cols=78 Identities=19% Similarity=0.126 Sum_probs=65.3
Q ss_pred CCCCCeEEEcCCCCCC-C----HHHHHHHHhccCCeeEEEEccCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEE
Q 020783 3 SRSSRTLYVGNLPGDT-R----MREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRV 77 (321)
Q Consensus 3 ~~~~~~l~V~nLp~~~-t----e~~L~~~F~~~G~I~~v~l~~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V 77 (321)
+.=.++|+|+||+.++ + .+.++++|..|+++........ =.=..|.|.++++|.+|-..|++..+.|+.|+|
T Consensus 2 s~~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS---FRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 2 SSGSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS---FKRVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp CSCCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT---TTEEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred CCCCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc---ceEEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 3446899999998864 3 2567999999999999888643 234689999999999999999999999999999
Q ss_pred EEccCC
Q 020783 78 ELAHGG 83 (321)
Q Consensus 78 ~~a~~~ 83 (321)
.++...
T Consensus 79 YFgq~~ 84 (104)
T 1wey_A 79 YFAQTL 84 (104)
T ss_dssp ECCCCS
T ss_pred EecCCC
Confidence 998844
No 384
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.96 E-value=6.3e-05 Score=55.30 Aligned_cols=71 Identities=13% Similarity=0.104 Sum_probs=64.4
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhc-----CCcEEEEEEEcCCCcEEEEEeCCHHHHHHHHHHhCCCcccCccceeEEE
Q 020783 108 SDYRVLVTGLPSSASWQDLKDHMRRA-----GDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 182 (321)
Q Consensus 108 ~~~~i~V~nl~~~~t~~~l~~~f~~~-----G~i~~~~i~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~i~ 182 (321)
...+|-+-|||..+++..|+.+..++ |.+..+.+..+.. -|+|+|.+...|-+|.-.|+|.+|.| +.|+
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~--GAivef~d~~~AgKasLaL~G~ef~g----r~Lr 93 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFN--GAIIIFRDSKFAAKMLMILNGSQFQG----KVIR 93 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTT--EEEEECSCHHHHHHHHHHHSSEEETT----EEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCC--ceEEEEccchhhHHHHhhcCCeeecC----eEEE
Confidence 35689999999999999999999999 9999999988866 59999999999999999999999999 7777
Q ss_pred EE
Q 020783 183 VR 184 (321)
Q Consensus 183 v~ 184 (321)
+-
T Consensus 94 ~g 95 (117)
T 2l9w_A 94 SG 95 (117)
T ss_dssp EE
T ss_pred ec
Confidence 64
No 385
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.65 E-value=0.00026 Score=53.23 Aligned_cols=72 Identities=17% Similarity=0.253 Sum_probs=60.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEccCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCC-ceEEEEEcc
Q 020783 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDG-YRLRVELAH 81 (321)
Q Consensus 5 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g-~~i~V~~a~ 81 (321)
..+-|-|-++|+.. -+.|...|++||.|.+.... ....+-.|.|.+..+|++||. .||..|+| -.|-|....
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~---~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p~~ 95 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS---NTGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKPCI 95 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC---SSSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEECC
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC---CCCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEECC
Confidence 35778899999985 67889999999999998873 336899999999999999999 89999985 567777754
No 386
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.56 E-value=0.0002 Score=51.56 Aligned_cols=54 Identities=19% Similarity=0.280 Sum_probs=44.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEccCCCCCcEEEEEEcCHHHHHHHHHhc
Q 020783 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGR 65 (321)
Q Consensus 6 ~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~~~~~kg~aFVeF~~~e~A~~A~~~l 65 (321)
.+.++| ++|+.+...||.++|+.||.|.--.|. -.-|||.|.+++.|..|+..+
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv~I~Wid-----DTsAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNIQISWID-----DTSAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSCCCEEEE-----TTEEEEECSCHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCEEEEEEc-----CCeEEEEecCHHHHHHHHHhc
Confidence 356677 999999999999999999955433333 347999999999999999966
No 387
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.52 E-value=0.00066 Score=48.72 Aligned_cols=76 Identities=17% Similarity=0.144 Sum_probs=58.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcc-----CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCc-----eEE
Q 020783 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI-----PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGY-----RLR 76 (321)
Q Consensus 7 ~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~-----~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~-----~i~ 76 (321)
+.|.|.+|||.+||+++.+.+..+.++....... ....-.-|||.|.+.+++....+.++|..+.+. .-.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a~ 81 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAI 81 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeeeE
Confidence 4789999999999999999999998776655521 112346799999999999999999999877433 234
Q ss_pred EEEccC
Q 020783 77 VELAHG 82 (321)
Q Consensus 77 V~~a~~ 82 (321)
|++|..
T Consensus 82 VE~AP~ 87 (91)
T 1uw4_A 82 VEFAPF 87 (91)
T ss_dssp EEECSS
T ss_pred EEEcCC
Confidence 555543
No 388
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.31 E-value=0.00019 Score=51.81 Aligned_cols=54 Identities=20% Similarity=0.325 Sum_probs=43.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEccCCCCCcEEEEEEcCHHHHHHHHHhcC
Q 020783 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRD 66 (321)
Q Consensus 7 ~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~~~~~kg~aFVeF~~~e~A~~A~~~l~ 66 (321)
+.++| ++|+.+...||.++|+.||.| .|.... -.-|||.|.+++.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv-~I~Wid----DTsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWID----DTSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEE-EEEEEE----TTEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCE-EEEEEc----CCeEEEEecCHHHHHHHHHhcc
Confidence 45667 999999999999999999943 233322 3479999999999999999764
No 389
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=97.10 E-value=0.0013 Score=50.06 Aligned_cols=77 Identities=21% Similarity=0.333 Sum_probs=57.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeE-EEEcc---------------CC-CCCcEEEEEEcCHHHHHHHHHhc
Q 020783 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVD-IDLKI---------------PP-RPPGYAFLEFEDYRDAEDAIRGR 65 (321)
Q Consensus 3 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~-v~l~~---------------~~-~~kg~aFVeF~~~e~A~~A~~~l 65 (321)
...+.-|.|-+.|++.+ ..+.+.|++||.|.+ +.+.. +. ....+..|+|.+..+|.+||. .
T Consensus 4 ~~~e~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~ 81 (132)
T 3p3d_A 4 SNGELAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-E 81 (132)
T ss_dssp ----CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-T
T ss_pred ccCceEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-h
Confidence 34567788889966655 567889999999877 22110 11 135788999999999999999 9
Q ss_pred CCcccCCceEEEEEcc
Q 020783 66 DGYNFDGYRLRVELAH 81 (321)
Q Consensus 66 ~g~~i~g~~i~V~~a~ 81 (321)
||..|+|.-|-|.+..
T Consensus 82 NG~ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 82 NGAVFNGVLLGVIPYT 97 (132)
T ss_dssp TTCEETTEECEEEECC
T ss_pred CCeEeCcEEEEEEECC
Confidence 9999999988888865
No 390
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.04 E-value=0.005 Score=44.10 Aligned_cols=68 Identities=13% Similarity=0.322 Sum_probs=57.7
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCCC------cEEEEEeCCHHHHHHHHHHhCCCcccCccc
Q 020783 110 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG------MTGIVDYTSYDDMKYAIRKLDRSEFRNAFS 177 (321)
Q Consensus 110 ~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~------g~afV~f~~~~~a~~A~~~l~g~~~~g~~~ 177 (321)
.+|.|.+||+.+|++++.+.+.....+........... .-|+|.|.+.+++..-.+.++|..+-+...
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg 75 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKG 75 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCC
Confidence 37899999999999999999999988777766655321 389999999999999999999999977543
No 391
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.91 E-value=0.0023 Score=46.77 Aligned_cols=70 Identities=11% Similarity=0.076 Sum_probs=57.3
Q ss_pred cEEEEeCCCCCC-C----HHHHHHHHHhcCCcEEEEEEEcCCCcEEEEEeCCHHHHHHHHHHhCCCcccCccceeEEEEE
Q 020783 110 YRVLVTGLPSSA-S----WQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVR 184 (321)
Q Consensus 110 ~~i~V~nl~~~~-t----~~~l~~~f~~~G~i~~~~i~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~i~v~ 184 (321)
++++|+||+.++ . .+.++++|..|+++........=. -..|.|.++++|.+|...||+..+.| ..+++-
T Consensus 6 ntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFR--Rirv~F~~~~~A~~AR~~Lh~~~f~g----~~~r~Y 79 (104)
T 1wey_A 6 SGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFK--RVRINFSNPLSAADARLRLHKTEFLG----KEMKLY 79 (104)
T ss_dssp CEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTT--EEEEECSSTTHHHHHHHTSTTSEETT----EECEEE
T ss_pred ceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcce--EEEEEeCChHHHHHHHHHhccceecC----ceeEEE
Confidence 489999998865 2 367899999999988877765533 57899999999999999999999999 555554
Q ss_pred e
Q 020783 185 E 185 (321)
Q Consensus 185 ~ 185 (321)
.
T Consensus 80 F 80 (104)
T 1wey_A 80 F 80 (104)
T ss_dssp C
T ss_pred e
Confidence 3
No 392
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.73 E-value=0.0058 Score=45.84 Aligned_cols=73 Identities=18% Similarity=0.190 Sum_probs=57.3
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCCCcEEEEEeCCHHHHHHHHHHhCCCcccCccceeEEEEEe
Q 020783 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 185 (321)
Q Consensus 106 ~~~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~i~v~~ 185 (321)
.....-|.|-++|+.. ...|..+|.+||+|..... ..++....|.|.+..+|++|+ ..||..+.|. ..|-+..
T Consensus 21 ~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~--~~~~NWihI~Y~s~~~A~rAL-~kNG~ii~g~---~mIGV~p 93 (119)
T 1wwh_A 21 HLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVM--SNTGNWMHIRYQSKLQARKAL-SKDGRIFGES---IMIGVKP 93 (119)
T ss_dssp CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEE--CSSSSEEEEEESSHHHHHHHH-TTTTCEETTT---EECEEEE
T ss_pred CCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEecc--CCCCCeEEEEeCCHHHHHHHH-HhCCeEecCC---EEEEEEE
Confidence 3445688999998885 6788899999999998876 334459999999999999999 5699998753 3444544
No 393
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=96.69 E-value=0.011 Score=42.57 Aligned_cols=55 Identities=18% Similarity=0.237 Sum_probs=44.2
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCCCcEEEEEeCCHHHHHHHHHHhC
Q 020783 109 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLD 168 (321)
Q Consensus 109 ~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~afV~f~~~~~a~~A~~~l~ 168 (321)
...++| ++|..+...||.++|+.||.|.--.|. |. .|||-|.+++.|..|+..+.
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv~I~Wid-DT---sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNIQISWID-DT---SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSCCCEEEE-TT---EEEEECSCHHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCEEEEEEc-CC---eEEEEecCHHHHHHHHHhcc
Confidence 345555 999999999999999999955444443 33 89999999999999998664
No 394
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.67 E-value=0.0051 Score=44.37 Aligned_cols=76 Identities=18% Similarity=0.183 Sum_probs=53.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEccCC------CCCcEEEEEEcCHHHHHHHHHhcCCcccCCc-----
Q 020783 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPP------RPPGYAFLEFEDYRDAEDAIRGRDGYNFDGY----- 73 (321)
Q Consensus 5 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~~~------~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~----- 73 (321)
-+-.|.|..|||.+||+++.+.++.+=++..... ..| ..-.-|||.|.+.++.....+.++|..+-+.
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~f-v~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~ 86 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEF-FAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEY 86 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCC-CCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEE
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEE-eCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEe
Confidence 3557999999999999998877776644322211 122 1235689999999999999999999877433
Q ss_pred eEEEEEcc
Q 020783 74 RLRVELAH 81 (321)
Q Consensus 74 ~i~V~~a~ 81 (321)
+-.|++|.
T Consensus 87 ~a~VE~AP 94 (97)
T 2l08_A 87 PAVVEFAP 94 (97)
T ss_dssp EEEEEECC
T ss_pred eeEEEecC
Confidence 34455554
No 395
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.53 E-value=0.022 Score=41.42 Aligned_cols=71 Identities=18% Similarity=0.226 Sum_probs=56.1
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHh-----cCCcEEEEEEEcCCCcEEEEEeCCHHHHHHHHHHhCCCcccCccceeEEE
Q 020783 108 SDYRVLVTGLPSSASWQDLKDHMRR-----AGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 182 (321)
Q Consensus 108 ~~~~i~V~nl~~~~t~~~l~~~f~~-----~G~i~~~~i~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~i~ 182 (321)
...+|.|.|||+.+.++.|.-+|+. -|+|..+.... .-|+|+|.+.+.|+..+++ ....+.+ ..+.
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~----~~AvItF~d~~va~rVL~k-~~H~L~~----~~Ls 77 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG----CGGVLTFREPADAERVLAQ-ADHELHG----AQLS 77 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET----TEEEEEESSHHHHHHHHTC-SCCBSSS----SBCE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC----CcEEEEEcChHHHHHHhcC-CcceecC----eEEE
Confidence 3468999999999999999999987 25888887765 3799999999999999953 3556666 5666
Q ss_pred EEecC
Q 020783 183 VREYD 187 (321)
Q Consensus 183 v~~~~ 187 (321)
|..+-
T Consensus 78 V~P~~ 82 (104)
T 2dhx_A 78 LRPAP 82 (104)
T ss_dssp EEECC
T ss_pred EEcCC
Confidence 66543
No 396
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.47 E-value=0.0016 Score=60.87 Aligned_cols=56 Identities=18% Similarity=0.215 Sum_probs=43.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEccCCCCCcEEEEEEcCHHHHHHHHH
Q 020783 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIR 63 (321)
Q Consensus 5 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~~~~~kg~aFVeF~~~e~A~~A~~ 63 (321)
..++|||. .|..+++.+|.++|++||.|.++.+..+ ..-||.|||.+.++|..++.
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~--~g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYES--FGLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECS--SSEEEEEECC---CCHHHHS
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEcc--CCeEEEEEeCCHHHHHHHHh
Confidence 35789997 7999999999999999999999998643 24799999999999998776
No 397
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=95.53 E-value=0.017 Score=41.58 Aligned_cols=53 Identities=17% Similarity=0.223 Sum_probs=42.7
Q ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCCCcEEEEEeCCHHHHHHHHHHhC
Q 020783 111 RVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLD 168 (321)
Q Consensus 111 ~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~afV~f~~~~~a~~A~~~l~ 168 (321)
.++| ++|..+...||..+|+.||.| .|....+. .|||-|.+++.|..|+..+.
T Consensus 8 V~~l-~FP~ewKt~Di~~lFs~fggv-~I~WidDT---sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 8 VLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT---SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEE-ECCTTCCHHHHHHHTTTSEEE-EEEEEETT---EEEEEEEEECHHHHHHHHHT
T ss_pred EEEE-eCChhhhhHHHHHHHhccCCE-EEEEEcCC---eEEEEecCHHHHHHHHHhcc
Confidence 3445 999999999999999999943 33333333 89999999999999998764
No 398
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=95.21 E-value=0.025 Score=40.79 Aligned_cols=69 Identities=14% Similarity=0.224 Sum_probs=52.7
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCCC------cEEEEEeCCHHHHHHHHHHhCCCcccCccce
Q 020783 110 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG------MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSR 178 (321)
Q Consensus 110 ~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~------g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~ 178 (321)
.+|.|..||+.+|++++.+.+...-++........... .-|+|.|.+.++...-.+.++|..+-+....
T Consensus 10 ~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~ 84 (97)
T 2l08_A 10 HMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGL 84 (97)
T ss_dssp CCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCC
T ss_pred eeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCC
Confidence 47999999999999999988887655433222222111 2799999999999999999999999775543
No 399
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=93.86 E-value=0.038 Score=51.54 Aligned_cols=55 Identities=13% Similarity=0.231 Sum_probs=41.9
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCCCcEEEEEeCCHHHHHHHHH
Q 020783 109 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIR 165 (321)
Q Consensus 109 ~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~afV~f~~~~~a~~A~~ 165 (321)
...|+|. .|..+++.+|.+.|.+||+|..+.+..+. +-||.|||.+.+++..++.
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-GLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-SEEEEEECC---CCHHHHS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-CeEEEEEeCCHHHHHHHHh
Confidence 3579997 79999999999999999999999988753 3599999999999987763
No 400
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=93.66 E-value=0.18 Score=38.30 Aligned_cols=73 Identities=16% Similarity=0.233 Sum_probs=51.6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCcEEE-EEE--------------EcC---CCcEEEEEeCCHHHHHHHHHHhCCC
Q 020783 109 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFS-QVF--------------RDR---GGMTGIVDYTSYDDMKYAIRKLDRS 170 (321)
Q Consensus 109 ~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~-~i~--------------~~~---~~g~afV~f~~~~~a~~A~~~l~g~ 170 (321)
..-|.|-++|+... ..+-+.|++||.|..- .+. .-+ ++....|+|.+..+|.+|+ ..||.
T Consensus 7 e~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL-~~NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDAL-LENGA 84 (132)
T ss_dssp -CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHH-TTTTC
T ss_pred ceEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHH-HhCCe
Confidence 34678888866554 5566789999998762 111 001 2348899999999999999 78999
Q ss_pred cccCccceeEEEEEecC
Q 020783 171 EFRNAFSRSYVRVREYD 187 (321)
Q Consensus 171 ~~~g~~~~~~i~v~~~~ 187 (321)
.+.| .-|-+.+++
T Consensus 85 ii~G----~mIGV~Py~ 97 (132)
T 3p3d_A 85 VFNG----VLLGVIPYT 97 (132)
T ss_dssp EETT----EECEEEECC
T ss_pred EeCc----EEEEEEECC
Confidence 9999 555565543
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=91.89 E-value=0.33 Score=45.98 Aligned_cols=54 Identities=20% Similarity=0.318 Sum_probs=44.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEccCCCCCcEEEEEEcCHHHHHHHHHhcC
Q 020783 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRD 66 (321)
Q Consensus 7 ~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~~~~~kg~aFVeF~~~e~A~~A~~~l~ 66 (321)
..++|+ +|+.+...+|.++|+.||.| +|.... ...|||.|.+.+.|..+++.+.
T Consensus 441 ~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~wid----dt~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 441 HVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWID----DTSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECS----SSEEEEECSCHHHHHHHHHHHT
T ss_pred cEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEc----CCeEEEEECCHHHHHHHHHHHH
Confidence 467776 99999999999999999964 443331 4579999999999999999774
No 402
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=79.37 E-value=5.5 Score=26.65 Aligned_cols=68 Identities=16% Similarity=0.183 Sum_probs=44.3
Q ss_pred eEEEcCC-CCCCCHHHHHHHHhccC-----CeeEEEEccCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEEcc
Q 020783 8 TLYVGNL-PGDTRMREVEDLFYKYG-----PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (321)
Q Consensus 8 ~l~V~nL-p~~~te~~L~~~F~~~G-----~I~~v~l~~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~a~ 81 (321)
+|||..= -..++..+|..++..-+ .|-.|.+. -.|.||+-... .|..+++.|++..+.|+.+.|+.+.
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~-----d~~s~v~v~~~-~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIM-----DNASYVEILNG-KGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEEC-----SSCEEEEECTT-CHHHHHHHHTTCCC---CCCEEECC
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEe-----CCcEEEEECHH-HHHHHHHHhccccCcCceEEEEECC
Confidence 4566322 23478888888887665 35556665 46899998765 4677888899999999999988764
No 403
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=75.73 E-value=7.4 Score=36.66 Aligned_cols=56 Identities=18% Similarity=0.227 Sum_probs=43.9
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCCCcEEEEEeCCHHHHHHHHHHhCC
Q 020783 109 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDR 169 (321)
Q Consensus 109 ~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~afV~f~~~~~a~~A~~~l~g 169 (321)
...++|+ +|..+...+|.+.|+.||.+ .|....+. .|||.|.+.+.|..+++.++.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widdt---~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDDT---SAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSSS---EEEEECSCHHHHHHHHHHHTT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcCC---eEEEEECCHHHHHHHHHHHHh
Confidence 3456665 99999999999999999954 33333332 799999999999999988853
No 404
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=65.78 E-value=31 Score=23.98 Aligned_cols=69 Identities=20% Similarity=0.225 Sum_probs=54.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEccCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCceEEEEE
Q 020783 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (321)
Q Consensus 4 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l~~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~i~g~~i~V~~ 79 (321)
..++-|-|-|||..+-..++.-.....|---.|... -|-|.|.|.+.++...|++.|-+. ....|.+++
T Consensus 10 kqnclikiinipqgtlkaevvlavrhlgyefycdyi-----dgqamirfqnsdeqrlaiqkllnh--nnnklqiei 78 (129)
T 4eyt_A 10 KQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI-----DGQAMIRFQNSDEQRLAIQKLLNH--NNNKLQIEI 78 (129)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC-----SSCEEEEESSHHHHHHHHHHHEET--TTTEEEEEE
T ss_pred hhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeee-----cCeeEEEecCChHHHHHHHHHHhc--CCCEEEEEE
Confidence 456788999999999999998888888876677776 578999999999999999766321 334555554
No 405
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=52.41 E-value=20 Score=28.33 Aligned_cols=50 Identities=20% Similarity=0.179 Sum_probs=36.6
Q ss_pred eEEEcCCCCC---------CCHHHHHHHH--hccCCeeEEEEccCCCCCcEEEEEEcCHHH
Q 020783 8 TLYVGNLPGD---------TRMREVEDLF--YKYGPIVDIDLKIPPRPPGYAFLEFEDYRD 57 (321)
Q Consensus 8 ~l~V~nLp~~---------~te~~L~~~F--~~~G~I~~v~l~~~~~~kg~aFVeF~~~e~ 57 (321)
++.|-|+|.. ....+|.+.| ..|.+++-..+....-..|+|.|+|...-.
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l~~~~Gh~g~aIv~F~~dw~ 74 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNYLGHSGTAIVEFNKDWN 74 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEEECSSBEEEEEEEECCSSHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeEecccCCCCceeEEEEecCChH
Confidence 4567788872 4567899977 999987766664444458999999997644
No 406
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=52.26 E-value=50 Score=22.96 Aligned_cols=34 Identities=26% Similarity=0.343 Sum_probs=26.9
Q ss_pred CeeEEEEccCCCCCcEEEEEEcCHHHHHHHHHhcCC
Q 020783 32 PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDG 67 (321)
Q Consensus 32 ~I~~v~l~~~~~~kg~aFVeF~~~e~A~~A~~~l~g 67 (321)
.|..+.++. ..+||.||++...++...++..+.|
T Consensus 39 ~i~~v~vP~--~fPGYVfVe~~~~~~~~~~I~~t~g 72 (92)
T 3lpe_A 39 DVYSILASE--SLKGYVLVEAETKGDVEELIKGMPR 72 (92)
T ss_dssp CEEEEEECT--TSTTEEEEEESSHHHHHHHHTTCTT
T ss_pred cEEEEEEec--ccCCEEEEEEecchhHHHHHHCCCC
Confidence 366666653 4699999999999999999987766
No 407
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=49.73 E-value=2.9 Score=32.46 Aligned_cols=29 Identities=17% Similarity=0.312 Sum_probs=19.6
Q ss_pred HHHHHHHhccCCeeEEEEccCCCCCcEEEEEEcC
Q 020783 21 REVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFED 54 (321)
Q Consensus 21 ~~L~~~F~~~G~I~~v~l~~~~~~kg~aFVeF~~ 54 (321)
+|+.++|...|.|+-+... +||+||+-.+
T Consensus 2 ~~~~~l~~~~G~Vkwfn~~-----kGfGFI~~~~ 30 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWFNVR-----MGFGFLSMTA 30 (148)
T ss_dssp ----CCEEEEEEEEEEETT-----TTEEEEEEEE
T ss_pred CcccccccceeEEEEEECC-----CCeeEEeeCc
Confidence 5666778888887766554 8999999863
No 408
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=44.28 E-value=67 Score=22.15 Aligned_cols=56 Identities=9% Similarity=0.131 Sum_probs=39.4
Q ss_pred eEEEcCCCCCCCHHHHHHHHhcc-C-CeeEEEEccCCCCCcEEEEEEcCHHHHHHHHH
Q 020783 8 TLYVGNLPGDTRMREVEDLFYKY-G-PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIR 63 (321)
Q Consensus 8 ~l~V~nLp~~~te~~L~~~F~~~-G-~I~~v~l~~~~~~kg~aFVeF~~~e~A~~A~~ 63 (321)
+-|+-.++..++..+|.+.++++ | +|..|.....+...--|||......+|.....
T Consensus 24 n~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~~~KKA~V~L~~~~~a~dva~ 81 (86)
T 3j21_T 24 NKLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITPRGEKKAYVKLKPEYSASEVAA 81 (86)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECTTSCEEEEEEECTTSCHHHHHH
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCCCceEEEEEcCCCCcHHHHHH
Confidence 34566678899999999999875 4 55565554433333459999998888776544
No 409
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=40.95 E-value=88 Score=21.67 Aligned_cols=57 Identities=14% Similarity=0.295 Sum_probs=47.3
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCCCcEEEEEeCCHHHHHHHHHHhC
Q 020783 108 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLD 168 (321)
Q Consensus 108 ~~~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~afV~f~~~~~a~~A~~~l~ 168 (321)
.++-|.+-|+|..+-..++--.....|.--+|..... .|+|.|.+.++..-|+.+|-
T Consensus 11 qnclikiinipqgtlkaevvlavrhlgyefycdyidg----qamirfqnsdeqrlaiqkll 67 (129)
T 4eyt_A 11 QNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYIDG----QAMIRFQNSDEQRLAIQKLL 67 (129)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECSS----CEEEEESSHHHHHHHHHHHE
T ss_pred hCcEEEEEecCCCceeeeeEEeehhcCeeEeeeeecC----eeEEEecCChHHHHHHHHHH
Confidence 4567889999999999988888888888777776644 79999999999999987763
No 410
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=33.96 E-value=96 Score=22.22 Aligned_cols=36 Identities=19% Similarity=0.290 Sum_probs=28.0
Q ss_pred CeeEEEEccCCCCCcEEEEEEcCHHHHHHHHHhcCCcc
Q 020783 32 PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYN 69 (321)
Q Consensus 32 ~I~~v~l~~~~~~kg~aFVeF~~~e~A~~A~~~l~g~~ 69 (321)
.|.++..+ ...+||-|||=.++.++..|++.+.+..
T Consensus 40 ~I~Si~~~--~~lkGyIyVEA~~~~~V~~ai~gi~~v~ 75 (106)
T 3h7h_B 40 QIKSVVAP--EHVKGYIYVEAYKQTHVKQAIEGVGNLR 75 (106)
T ss_dssp CCCEEEEC--TTCCSEEEEEESSHHHHHHHHTTCGGGG
T ss_pred ceEEEEec--CCCceEEEEEeCCHHHHHHHHhccccee
Confidence 46666554 4569999999999999999998776543
No 411
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.71 E-value=23 Score=23.07 Aligned_cols=20 Identities=30% Similarity=0.509 Sum_probs=13.7
Q ss_pred CCeeEEEEccCCCCCcEEEEEEcCH
Q 020783 31 GPIVDIDLKIPPRPPGYAFLEFEDY 55 (321)
Q Consensus 31 G~I~~v~l~~~~~~kg~aFVeF~~~ 55 (321)
|.|+.|... +..|||.|++.
T Consensus 28 GtV~kV~~~-----~~~ClV~FeD~ 47 (68)
T 2e5p_A 28 GTIKKVDSA-----REVCLVQFEDD 47 (68)
T ss_dssp EEEEEEETT-----TTEEEEEETTT
T ss_pred eEEEEEecC-----CcEEEEEEccC
Confidence 455555433 78899999874
No 412
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=30.40 E-value=1.1e+02 Score=21.08 Aligned_cols=55 Identities=11% Similarity=0.076 Sum_probs=37.8
Q ss_pred eEEEcCCCCCCCHHHHHHHHhcc-C-CeeEEEEccCCCCCcEEEEEEcCHHHHHHHH
Q 020783 8 TLYVGNLPGDTRMREVEDLFYKY-G-PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAI 62 (321)
Q Consensus 8 ~l~V~nLp~~~te~~L~~~F~~~-G-~I~~v~l~~~~~~kg~aFVeF~~~e~A~~A~ 62 (321)
+-|+-.+++.++..+|.+.++++ | +|..|.-......---|||......+|....
T Consensus 23 n~~~F~V~~~AnK~qIK~ave~lf~VkV~~VNT~~~~~~~KKA~VtL~~g~~aid~~ 79 (85)
T 1vq8_S 23 NKLQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTMDGEKKAVVRLSEDDDAQEVA 79 (85)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTTSSEEEEEEECTTSCHHHHH
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCCceEEEeeecCCCceEEEEEECCCCcHHHHH
Confidence 34566678999999999999764 5 5666655443333345999998877765543
No 413
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=27.80 E-value=30 Score=22.62 Aligned_cols=11 Identities=36% Similarity=0.531 Sum_probs=9.5
Q ss_pred CcEEEEEEcCH
Q 020783 45 PGYAFLEFEDY 55 (321)
Q Consensus 45 kg~aFVeF~~~ 55 (321)
++.|+|.|++-
T Consensus 41 ~gtC~V~F~D~ 51 (66)
T 2eqj_A 41 KQSCFIIFEDS 51 (66)
T ss_dssp TTEEEEEETTT
T ss_pred CcEEEEEEccC
Confidence 78999999873
No 414
>2od0_A Hypothetical protein VP1028; structural genomics, unknown functi 2, protein structure initiative, midwest center for structu genomics; 1.95A {Vibrio parahaemolyticus} SCOP: d.198.5.2
Probab=27.61 E-value=55 Score=23.22 Aligned_cols=27 Identities=19% Similarity=0.384 Sum_probs=22.2
Q ss_pred CCHHHHHHHHhccCCeeEEEEccCCCCCcEEE
Q 020783 18 TRMREVEDLFYKYGPIVDIDLKIPPRPPGYAF 49 (321)
Q Consensus 18 ~te~~L~~~F~~~G~I~~v~l~~~~~~kg~aF 49 (321)
.+++.|.++|+.+|.|..-.+. .||||
T Consensus 4 ~~~~~i~e~l~~lg~i~~r~MF-----Gg~~l 30 (105)
T 2od0_A 4 PILKDSMKLFEALGTIKSRSMF-----GGFGL 30 (105)
T ss_dssp THHHHHHHHHGGGSCCEEEEET-----TEEEE
T ss_pred hHHHHHHHHHhccCCceEeecc-----CcEEE
Confidence 4678899999999999988887 56655
No 415
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=25.77 E-value=51 Score=27.98 Aligned_cols=32 Identities=25% Similarity=0.317 Sum_probs=25.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEE
Q 020783 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDL 38 (321)
Q Consensus 6 ~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l 38 (321)
..-+.|+|||++++..-|..++.. +.+..+.+
T Consensus 110 ~~~~iv~NlPy~iss~il~~ll~~-~~~~~~~l 141 (271)
T 3fut_A 110 QGSLLVANLPYHIATPLVTRLLKT-GRFARLVF 141 (271)
T ss_dssp TTEEEEEEECSSCCHHHHHHHHHH-CCEEEEEE
T ss_pred CccEEEecCcccccHHHHHHHhcC-CCCCEEEE
Confidence 346789999999999999999988 66655444
No 416
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=24.34 E-value=1.4e+02 Score=18.77 Aligned_cols=54 Identities=11% Similarity=0.074 Sum_probs=40.9
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCcEEEEEEEcCCCcEEEEEeCCHHHHHHHHHH
Q 020783 110 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRK 166 (321)
Q Consensus 110 ~~i~V~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~afV~f~~~~~a~~A~~~ 166 (321)
.++.|.++.-.-....++..+.+ ..|..+.+.... +.+.|+|.+.++...+++.
T Consensus 7 ~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~~--~~~~v~~~~~~~i~~~i~~ 60 (73)
T 3fry_A 7 IVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLNE--AVVAGNKEDVDKYIKAVEA 60 (73)
T ss_dssp EEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSSE--EEEEEEGGGHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEccC--CEEEEEECCHHHHHHHHHH
Confidence 46889999888889999999999 888877775432 3677888755556666654
No 417
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=23.79 E-value=39 Score=22.70 Aligned_cols=20 Identities=30% Similarity=0.509 Sum_probs=13.4
Q ss_pred CCeeEEEEccCCCCCcEEEEEEcCH
Q 020783 31 GPIVDIDLKIPPRPPGYAFLEFEDY 55 (321)
Q Consensus 31 G~I~~v~l~~~~~~kg~aFVeF~~~ 55 (321)
|.|..|... +..|||.|++.
T Consensus 45 GTI~kV~~~-----~e~ClV~F~D~ 64 (79)
T 2m0o_A 45 GTIKKVDSA-----REVCLVQFEDD 64 (79)
T ss_dssp EEEEEEETT-----TTEEEEEETTS
T ss_pred EEEEEeccC-----CCEEEEEEcCC
Confidence 455444433 77899999874
No 418
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=23.43 E-value=1.8e+02 Score=22.81 Aligned_cols=48 Identities=21% Similarity=0.279 Sum_probs=32.7
Q ss_pred cEEEEeCCCC-C--------CCHHHHHHHH--HhcCCcEEEEEEEcCCC--cEEEEEeCCHH
Q 020783 110 YRVLVTGLPS-S--------ASWQDLKDHM--RRAGDVCFSQVFRDRGG--MTGIVDYTSYD 158 (321)
Q Consensus 110 ~~i~V~nl~~-~--------~t~~~l~~~f--~~~G~i~~~~i~~~~~~--g~afV~f~~~~ 158 (321)
+.+.|.|+|. . ....+|.+.| ..|.++... ...++.+ |+|.|+|..--
T Consensus 13 wmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~-~l~~~~Gh~g~aIv~F~~dw 73 (172)
T 4e8u_A 13 WKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVR-PLWNYLGHSGTAIVEFNKDW 73 (172)
T ss_dssp CEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEE-EEECSSBEEEEEEEECCSSH
T ss_pred CEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeE-ecccCCCCceeEEEEecCCh
Confidence 4667777776 1 3457899977 889887744 4444433 68999998643
No 419
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=22.40 E-value=1.9e+02 Score=19.79 Aligned_cols=25 Identities=16% Similarity=0.105 Sum_probs=20.3
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHhCC
Q 020783 145 RGGMTGIVDYTSYDDMKYAIRKLDR 169 (321)
Q Consensus 145 ~~~g~afV~f~~~~~a~~A~~~l~g 169 (321)
.-.||.||++...++...+++...|
T Consensus 48 ~fPGYVfVe~~~~~~~~~~I~~t~g 72 (92)
T 3lpe_A 48 SLKGYVLVEAETKGDVEELIKGMPR 72 (92)
T ss_dssp TSTTEEEEEESSHHHHHHHHTTCTT
T ss_pred ccCCEEEEEEecchhHHHHHHCCCC
Confidence 4678999999999888888866554
No 420
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.59 E-value=19 Score=23.16 Aligned_cols=12 Identities=25% Similarity=0.418 Sum_probs=9.8
Q ss_pred CCcEEEEEEcCH
Q 020783 44 PPGYAFLEFEDY 55 (321)
Q Consensus 44 ~kg~aFVeF~~~ 55 (321)
.+..|||.|++.
T Consensus 34 ~~~~ClV~FeD~ 45 (63)
T 2e5q_A 34 SKQSCLVTFEDN 45 (63)
T ss_dssp TTSEEEEEETTS
T ss_pred CCCEEEEEEccC
Confidence 478899999874
No 421
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=21.44 E-value=60 Score=31.48 Aligned_cols=54 Identities=17% Similarity=0.306 Sum_probs=40.6
Q ss_pred cCCCCCCCHHHHHHHH----hccCCeeEEEEccC--CCCCcEEEEEEcCHHHHHHHHHhc
Q 020783 12 GNLPGDTRMREVEDLF----YKYGPIVDIDLKIP--PRPPGYAFLEFEDYRDAEDAIRGR 65 (321)
Q Consensus 12 ~nLp~~~te~~L~~~F----~~~G~I~~v~l~~~--~~~kg~aFVeF~~~e~A~~A~~~l 65 (321)
+..+.+.+--||..+| ..+|-|..+.|+.. +....++++.|.+.++|.+|+..+
T Consensus 349 ~~~~k~~aGyDL~~L~iGSEGTLGIITeatLrL~P~P~~~~~~~~~f~d~~~a~~av~~i 408 (658)
T 4bby_A 349 CQGPRMSTGPDIHHFIMGSEGTLGVITEATIKIRPTPEYQKYGSVAFPNFEQGVACLREI 408 (658)
T ss_dssp CCCSSCCSSSCTHHHHTTCTTSSCEEEEEEEECEECCSEEEEEEEEESSHHHHHHHHHHH
T ss_pred ccccccCCCcCHHHHhccCCCcCcceeeeeeeeccCCccccccccccCCchhhhhhHHHH
Confidence 3445555556788888 47899999999543 334577899999999999988755
No 422
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=20.34 E-value=35 Score=29.18 Aligned_cols=32 Identities=19% Similarity=0.184 Sum_probs=25.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCCeeEEEE
Q 020783 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDL 38 (321)
Q Consensus 7 ~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~l 38 (321)
..+.|+|||++++..-|..+++....+..+.+
T Consensus 115 ~~~vv~NlPY~iss~il~~ll~~~~~~~~~~~ 146 (279)
T 3uzu_A 115 SLRIIGNLPYNISSPLLFHLMSFAPVVIDQHF 146 (279)
T ss_dssp CEEEEEECCHHHHHHHHHHHGGGGGGEEEEEE
T ss_pred ceEEEEccCccccHHHHHHHHhccCCccEEEE
Confidence 46789999999999999999986655655544
Done!