BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020784
(321 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4AV8|A Chain A, Kluyveromyces Lactis Hsv2 Complete Loop 6cd
pdb|4AV9|A Chain A, Kluyveromyces Lactis Hsv2
pdb|4EXV|A Chain A, Structure Of Kluyveromyces Lactis Hsv2p
Length = 339
Score = 79.0 bits (193), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 93/210 (44%), Gaps = 20/210 (9%)
Query: 93 FNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQ 152
FNQD C T F IYN P + I ++ G I ML R N +A V +
Sbjct: 22 FNQDQSCLIVSTPKSFDIYNVHPLKRIMSQEMPDAGTI---RMLHRTNYIAFVSTKKELL 78
Query: 153 YPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIET 212
+ IWDD + + I + + V+ + L R+ I+V I ++ F + ++I
Sbjct: 79 H------IWDDVKKQDITRVKLDAAVKDLFLSREFIVVSQGDVISIFKFGNP--WNKITE 130
Query: 213 IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK------FIMAHDSRIACFAL 266
G+C + G L++ GQ+ V + + + AH + + L
Sbjct: 131 DIKFGGVCEFANG---LLVYSNEFNLGQIHVTRLQTDAEQVVGKGVLVKAHANPVKMVRL 187
Query: 267 TQDGQLLATSSTKGTLVRIFNTLDGTLLQE 296
+ G ++AT S GTL+R+F T +G L++E
Sbjct: 188 NRKGDMVATCSQDGTLIRVFQTDNGVLVRE 217
>pdb|3VU4|A Chain A, Crystal Structure Of Kluyvelomyces Marxianus Hsv2
pdb|3VU4|B Chain B, Crystal Structure Of Kluyvelomyces Marxianus Hsv2
Length = 355
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/221 (26%), Positives = 91/221 (41%), Gaps = 31/221 (14%)
Query: 93 FNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQ 152
FNQD C T F IYN P I ++ + V ML R N +A V G +
Sbjct: 27 FNQDQSCLILSTLKSFEIYNVHPVAHIMSQEMRH---LSKVRMLHRTNYVAFVTGVKEV- 82
Query: 153 YPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIET 212
V IWDD + + + + + V+ + L R+ I+V I V+ F + +I
Sbjct: 83 -----VHIWDDVKKQDVSRIKVDAPVKDLFLSREFIVVSYGDVISVFKFGNP--WKRITD 135
Query: 213 IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK-----------------RTKFIM 255
G+C S G L++ GQ+ + S + I
Sbjct: 136 DIRFGGVCEFSNG---LLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIK 192
Query: 256 AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQE 296
AH + I L + ++AT S GT++R+F T DG L++E
Sbjct: 193 AHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVRE 233
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine
Apaf-1
Length = 1256
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 254 IMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCPSISAQSGLWLSSA 313
+ H+ + C A + DG LLAT G +RI+N DG LL C IS + G
Sbjct: 1130 LKGHNGCVRCSAFSLDGILLATGDDNGE-IRIWNVSDGQLLHS--CAPISVEEGTATHGG 1186
Query: 314 WL 315
W+
Sbjct: 1187 WV 1188
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 51/113 (45%), Gaps = 15/113 (13%)
Query: 187 RIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHY 246
+II + ++F K + I+ A+ K L + S+ ++V ++
Sbjct: 993 KIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSE-------------DSVIQVWNW 1039
Query: 247 ASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECC 299
+ F+ AH + F L QD +LL+ S GT V+++N + G + ++ C
Sbjct: 1040 QTGDYVFLQAHQETVKDFRLLQDSRLLSW-SFDGT-VKVWNVITGRIERDFTC 1090
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 254 IMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCPSISAQSGLWLSSA 313
+ H+ + C A + DG LLAT G +RI+N DG LL C IS + G
Sbjct: 1123 LKGHNGCVRCSAFSLDGILLATGDDNGE-IRIWNVSDGQLLHS--CAPISVEEGTATHGG 1179
Query: 314 WL 315
W+
Sbjct: 1180 WV 1181
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 51/113 (45%), Gaps = 15/113 (13%)
Query: 187 RIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHY 246
+II + ++F K + I+ A+ K L + S+ ++V ++
Sbjct: 986 KIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSE-------------DSVIQVWNW 1032
Query: 247 ASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECC 299
+ F+ AH + F L QD +LL+ S GT V+++N + G + ++ C
Sbjct: 1033 QTGDYVFLQAHQETVKDFRLLQDSRLLSW-SFDGT-VKVWNVITGRIERDFTC 1083
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 36/170 (21%), Positives = 74/170 (43%), Gaps = 18/170 (10%)
Query: 132 VVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS-RCIGELSFRSEVRSVKL--RRDRI 188
V + +R + L L GG D N V IWD S + + + V++V + +
Sbjct: 220 VCGLAWRSDGLQLASGGND-----NVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNL 274
Query: 189 IVV----LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVE 244
+ ++++I +N A ++ ++ + L ++ G + +
Sbjct: 275 LATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHS--KEIMSTHGFPDNNLSIW 332
Query: 245 HYASK---RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG 291
Y+S + I AHD+R+ AL+ DG++L+T+++ L + + DG
Sbjct: 333 SYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENL-KFWRVYDG 381
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 32.0 bits (71), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 43/90 (47%), Gaps = 8/90 (8%)
Query: 203 DLKLLHQIETIANPKGLCAVSQ----GVGSLVLVCPGLQKGQVRV-EHYASKRTKFIMAH 257
DL+ ++ T ++ +C ++ G L+L G V + + R + H
Sbjct: 254 DLRADQELMTYSHDNIICGITSVSFSKSGRLLL--AGYDDFNCNVWDALKADRAGVLAGH 311
Query: 258 DSRIACFALTQDGQLLATSSTKGTLVRIFN 287
D+R++C +T DG +AT S + ++I+N
Sbjct: 312 DNRVSCLGVTDDGMAVATGSWD-SFLKIWN 340
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 32.0 bits (71), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 43/90 (47%), Gaps = 8/90 (8%)
Query: 203 DLKLLHQIETIANPKGLCAVSQ----GVGSLVLVCPGLQKGQVRV-EHYASKRTKFIMAH 257
DL+ ++ T ++ +C ++ G L+L G V + + R + H
Sbjct: 254 DLRADQELMTYSHDNIICGITSVSFSKSGRLLL--AGYDDFNCNVWDALKADRAGVLAGH 311
Query: 258 DSRIACFALTQDGQLLATSSTKGTLVRIFN 287
D+R++C +T DG +AT S + ++I+N
Sbjct: 312 DNRVSCLGVTDDGMAVATGSWD-SFLKIWN 340
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 32.0 bits (71), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 43/90 (47%), Gaps = 8/90 (8%)
Query: 203 DLKLLHQIETIANPKGLCAVSQ----GVGSLVLVCPGLQKGQVRV-EHYASKRTKFIMAH 257
DL+ ++ T ++ +C ++ G L+L G V + + R + H
Sbjct: 254 DLRADQELMTYSHDNIICGITSVSFSKSGRLLL--AGYDDFNCNVWDALKADRAGVLAGH 311
Query: 258 DSRIACFALTQDGQLLATSSTKGTLVRIFN 287
D+R++C +T DG +AT S + ++I+N
Sbjct: 312 DNRVSCLGVTDDGMAVATGSWD-SFLKIWN 340
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 32.0 bits (71), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 43/90 (47%), Gaps = 8/90 (8%)
Query: 203 DLKLLHQIETIANPKGLCAVSQ----GVGSLVLVCPGLQKGQVRV-EHYASKRTKFIMAH 257
DL+ ++ T ++ +C ++ G L+L G V + + R + H
Sbjct: 254 DLRADQELMTYSHDNIICGITSVSFSKSGRLLL--AGYDDFNCNVWDALKADRAGVLAGH 311
Query: 258 DSRIACFALTQDGQLLATSSTKGTLVRIFN 287
D+R++C +T DG +AT S + ++I+N
Sbjct: 312 DNRVSCLGVTDDGMAVATGSWD-SFLKIWN 340
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 32.0 bits (71), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 248 SKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFN 287
+ R + HD+R++C +T DG +AT S + ++I+N
Sbjct: 313 ADRAGVLAGHDNRVSCLGVTDDGMAVATGSWD-SFLKIWN 351
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 31.2 bits (69), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 9/68 (13%)
Query: 254 IMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLL--------QEECCPSISAQ 305
I AH+ + C A + D + +AT S V+I+N++ G L+ Q CC ++
Sbjct: 659 IKAHEDEVLCCAFSTDDRFIATCSVDKK-VKIWNSMTGELVHTYDEHSEQVNCCHFTNSS 717
Query: 306 SGLWLSSA 313
L L++
Sbjct: 718 HHLLLATG 725
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
Query: 254 IMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCP---SISAQSGLWL 310
+ H+ + C A + D LLAT G +RI+N +G LL C P +A G W+
Sbjct: 1129 LRGHNGCVRCSAFSVDSTLLATGDDNGE-IRIWNVSNGELLH-LCAPLSEEGAATHGGWV 1186
Query: 311 S 311
+
Sbjct: 1187 T 1187
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 9/65 (13%)
Query: 230 VLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL 289
+L P L + ++ VE + S + H S + C + DG+ LAT K T +++
Sbjct: 43 ILYNPALPR-EIDVELHKS------LDHTSVVCCVKFSNDGEYLATGCNKTT--QVYRVS 93
Query: 290 DGTLL 294
DG+L+
Sbjct: 94 DGSLV 98
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 244 EHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQ 295
H K + AH S + A + DGQ +A++S T V+++N +G LLQ
Sbjct: 2 SHMGVKERNRLEAHSSSVRGVAFSPDGQTIASASDDKT-VKLWN-RNGQLLQ 51
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 28.1 bits (61), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 252 KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQ 295
K + AH ++ +DG L+ +SS G L RI++T G L+
Sbjct: 165 KTLPAHSDPVSAVHFNRDGSLIVSSSYDG-LCRIWDTASGQCLK 207
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 28.1 bits (61), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 252 KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQ 295
K + AH ++ +DG L+ +SS G L RI++T G L+
Sbjct: 167 KTLPAHSDPVSAVHFNRDGSLIVSSSYDG-LCRIWDTASGQCLK 209
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 28.1 bits (61), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 252 KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQ 295
K + AH ++ +DG L+ +SS G L RI++T G L+
Sbjct: 149 KTLPAHSDPVSAVHFNRDGSLIVSSSYDG-LCRIWDTASGQCLK 191
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 28.1 bits (61), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 252 KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQ 295
K + AH ++ +DG L+ +SS G L RI++T G L+
Sbjct: 139 KTLPAHSDPVSAVHFNRDGSLIVSSSYDG-LCRIWDTASGQCLK 181
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 28.1 bits (61), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 252 KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQ 295
K + AH ++ +DG L+ +SS G L RI++T G L+
Sbjct: 142 KTLPAHSDPVSAVHFNRDGSLIVSSSYDG-LCRIWDTASGQCLK 184
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 28.1 bits (61), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 252 KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQ 295
K + AH ++ +DG L+ +SS G L RI++T G L+
Sbjct: 149 KTLPAHSDPVSAVHFNRDGSLIVSSSYDG-LCRIWDTASGQCLK 191
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 28.1 bits (61), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 252 KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQ 295
K + AH ++ +DG L+ +SS G L RI++T G L+
Sbjct: 146 KTLPAHSDPVSAVHFNRDGSLIVSSSYDG-LCRIWDTASGQCLK 188
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 28.1 bits (61), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 252 KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQ 295
K + AH ++ +DG L+ +SS G L RI++T G L+
Sbjct: 146 KTLPAHSDPVSAVHFNRDGSLIVSSSYDG-LCRIWDTASGQCLK 188
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 28.1 bits (61), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 252 KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQ 295
K + AH ++ +DG L+ +SS G L RI++T G L+
Sbjct: 144 KTLPAHSDPVSAVHFNRDGSLIVSSSYDG-LCRIWDTASGQCLK 186
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 28.1 bits (61), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 252 KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQ 295
K + AH ++ +DG L+ +SS G L RI++T G L+
Sbjct: 143 KTLPAHSDPVSAVHFNRDGSLIVSSSYDG-LCRIWDTASGQCLK 185
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 252 KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQ 295
K + AH ++ +DG L+ +SS G L RI++T G L+
Sbjct: 149 KTLPAHSDPVSAVHFNRDGSLIVSSSYDG-LCRIWDTASGQCLK 191
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 252 KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQ 295
K + AH ++ +DG L+ +SS G L RI++T G L+
Sbjct: 160 KTLPAHSDPVSAVHFNRDGSLIVSSSYDG-LCRIWDTASGQCLK 202
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 28.1 bits (61), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 252 KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQ 295
K + AH ++ +DG L+ +SS G L RI++T G L+
Sbjct: 143 KTLPAHSDPVSAVHFNRDGSLIVSSSYDG-LCRIWDTASGQCLK 185
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 28.1 bits (61), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 252 KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQ 295
K + AH ++ +DG L+ +SS G L RI++T G L+
Sbjct: 148 KTLPAHSDPVSAVHFNRDGSLIVSSSYDG-LCRIWDTASGQCLK 190
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 27.7 bits (60), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 252 KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQ 295
K + AH ++ +DG L+ +SS G L RI++T G L+
Sbjct: 146 KTLPAHSDPVSAVHFNRDGSLIVSSSYDG-LCRIWDTASGQCLK 188
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 27.7 bits (60), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 22/109 (20%), Positives = 47/109 (43%), Gaps = 7/109 (6%)
Query: 181 VKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQ 237
V L D+ V + + K+ VY + + +++TI +P + +V+ LV
Sbjct: 454 VALSNDKQFVAVGGQDSKVHVYKLSGASV-SEVKTIVHPAEITSVAFSNNGAFLVATDQS 512
Query: 238 KGQVR---VEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLV 283
+ + ++ T H +++AC + + D LAT S +++
Sbjct: 513 RKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVI 561
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 27.7 bits (60), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 252 KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQ 295
K + AH ++ +DG L+ +SS G L RI++T G L+
Sbjct: 146 KTLPAHSDPVSAVHFNRDGSLIVSSSYDG-LCRIWDTASGQCLK 188
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 27.7 bits (60), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 252 KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQ 295
K + AH ++ +DG L+ +SS G L RI++T G L+
Sbjct: 146 KTLPAHSDPVSAVHFNRDGSLIVSSSYDG-LCRIWDTASGQCLK 188
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,074,738
Number of Sequences: 62578
Number of extensions: 292954
Number of successful extensions: 593
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 563
Number of HSP's gapped (non-prelim): 49
length of query: 321
length of database: 14,973,337
effective HSP length: 99
effective length of query: 222
effective length of database: 8,778,115
effective search space: 1948741530
effective search space used: 1948741530
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.3 bits)