Query 020786
Match_columns 321
No_of_seqs 176 out of 1186
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 08:10:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020786.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020786hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mva_O Transcription terminati 100.0 1.3E-52 4.5E-57 390.0 18.8 287 2-298 37-342 (343)
2 3m66_A Mterf3, mterf domain-co 100.0 2.8E-51 9.7E-56 369.3 16.1 253 13-302 5-262 (270)
3 4fp9_B Mterf domain-containing 100.0 1.4E-38 4.6E-43 291.9 18.5 224 48-312 45-276 (335)
4 3mva_O Transcription terminati 100.0 4.9E-37 1.7E-41 285.2 17.6 273 13-295 19-310 (343)
5 3m66_A Mterf3, mterf domain-co 100.0 2.1E-32 7.3E-37 246.0 18.3 191 3-234 23-224 (270)
6 4fp9_B Mterf domain-containing 100.0 4.9E-28 1.7E-32 221.9 17.2 182 11-238 44-227 (335)
7 4fzv_B Mterf domain-containing 99.3 6.1E-11 2.1E-15 93.4 13.5 177 87-300 35-219 (239)
8 4fzv_B Mterf domain-containing 98.6 8E-07 2.7E-11 70.0 12.1 119 49-169 33-153 (239)
9 3ff5_A PEX14P, peroxisomal bio 91.1 0.26 8.8E-06 31.8 3.8 35 34-72 19-53 (54)
10 3ff5_A PEX14P, peroxisomal bio 89.4 0.87 3E-05 29.3 5.2 35 70-108 19-53 (54)
11 4ae4_A Ubiquitin-associated pr 89.2 3.6 0.00012 31.1 9.5 98 15-130 10-113 (118)
12 2w84_A Peroxisomal membrane pr 88.5 0.59 2E-05 31.8 4.1 36 34-73 24-59 (70)
13 4ae4_A Ubiquitin-associated pr 84.1 12 0.0004 28.2 10.1 95 50-163 9-111 (118)
14 2w84_A Peroxisomal membrane pr 82.5 2.6 8.9E-05 28.6 5.0 36 70-109 24-59 (70)
15 1oqy_A HHR23A, UV excision rep 82.3 2.8 9.5E-05 38.3 6.9 36 14-57 169-204 (368)
16 1oqy_A HHR23A, UV excision rep 71.1 3.1 0.00011 38.0 3.8 38 49-94 168-205 (368)
17 3idw_A Actin cytoskeleton-regu 69.0 11 0.00036 25.7 5.1 53 16-71 5-59 (72)
18 1ify_A HHR23A, UV excision rep 68.6 5.3 0.00018 25.0 3.4 39 189-234 7-45 (49)
19 2cos_A Serine/threonine protei 67.7 5 0.00017 25.6 3.1 39 194-239 13-51 (54)
20 2ekk_A UBA domain from E3 ubiq 66.4 6.6 0.00022 24.2 3.5 35 192-234 11-45 (47)
21 2g3q_A Protein YBL047C; endocy 64.8 4.7 0.00016 24.3 2.5 36 192-234 6-41 (43)
22 3ugm_A TAL effector avrbs3/PTH 64.1 22 0.00076 35.2 8.1 44 199-245 591-635 (1047)
23 1veg_A NEDD8 ultimate buster-1 63.9 9.2 0.00032 26.9 4.2 40 191-237 30-69 (83)
24 2ooa_A E3 ubiquitin-protein li 63.4 5.6 0.00019 25.2 2.7 25 188-212 9-33 (52)
25 2knz_A Ubiquilin-4; cytoplasm, 62.5 7.9 0.00027 24.6 3.4 41 187-234 8-49 (53)
26 1z96_A DNA-damage, UBA-domain 61.7 8.5 0.00029 22.5 3.3 23 191-213 5-27 (40)
27 2dak_A Ubiquitin carboxyl-term 60.8 11 0.00039 24.7 4.1 39 191-236 10-48 (63)
28 3ugm_A TAL effector avrbs3/PTH 59.9 1.3E+02 0.0045 29.9 12.6 78 59-142 287-366 (1047)
29 2xzm_O RPS13E; ribosome, trans 59.0 21 0.00072 27.9 5.8 32 6-37 25-59 (153)
30 1uxc_A FRUR (1-57), fructose r 58.1 15 0.00053 24.2 4.4 44 129-172 8-51 (65)
31 1wgn_A UBAP1, ubiquitin associ 56.6 14 0.00049 24.3 3.8 39 191-236 20-58 (63)
32 3u5c_N S27A, YS15, 40S ribosom 56.3 22 0.00074 27.8 5.5 34 38-72 23-56 (151)
33 1wji_A Tudor domain containing 54.0 10 0.00036 25.0 3.0 37 192-235 11-47 (63)
34 1vg5_A RSGI RUH-014, rhomboid 52.8 9.3 0.00032 26.1 2.6 38 190-234 29-66 (73)
35 2cpw_A CBL-interacting protein 52.4 15 0.00052 24.3 3.6 37 193-235 22-58 (64)
36 2knz_A Ubiquilin-4; cytoplasm, 51.1 17 0.00057 23.0 3.5 13 85-97 11-23 (53)
37 2oo9_A E3 ubiquitin-protein li 50.2 18 0.00063 22.1 3.3 24 189-212 3-26 (46)
38 2dag_A Ubiquitin carboxyl-term 49.7 21 0.00071 24.4 4.0 40 192-237 11-50 (74)
39 2l8n_A Transcriptional repress 47.7 33 0.0011 22.7 4.8 42 128-172 16-57 (67)
40 3e3v_A Regulatory protein RECX 47.4 1.1E+02 0.0036 24.4 8.9 83 16-107 24-108 (177)
41 2juj_A E3 ubiquitin-protein li 47.1 22 0.00077 22.7 3.5 25 188-212 5-29 (56)
42 4hpz_A Dtale2; DNA binding pro 47.1 1.7E+02 0.0057 26.7 12.7 55 189-245 196-251 (463)
43 1wiv_A UBP14, ubiquitin-specif 46.8 16 0.00056 24.8 3.1 38 191-235 30-67 (73)
44 1dv0_A DNA repair protein HHR2 42.6 8.4 0.00029 23.8 1.0 22 192-213 6-27 (47)
45 2jy5_A Ubiquilin-1; UBA, alter 42.6 21 0.00071 22.5 2.9 23 189-211 11-34 (52)
46 1wji_A Tudor domain containing 41.6 53 0.0018 21.5 4.9 35 16-58 12-46 (63)
47 2ooa_A E3 ubiquitin-protein li 41.4 28 0.00097 22.0 3.2 22 51-72 13-34 (52)
48 2crn_A Ubash3A protein; compac 41.0 30 0.001 22.8 3.6 39 193-237 12-50 (64)
49 3oq9_A Tumor necrosis factor r 40.5 59 0.002 22.8 5.3 24 16-39 15-38 (86)
50 1vek_A UBP14, ubiquitin-specif 39.2 39 0.0013 23.6 4.2 39 192-236 31-69 (84)
51 2bwb_A Ubiquitin-like protein 39.2 29 0.00098 21.2 3.1 17 188-204 5-21 (46)
52 1vg5_A RSGI RUH-014, rhomboid 38.4 44 0.0015 22.7 4.2 36 15-58 31-66 (73)
53 3j20_Q 30S ribosomal protein S 38.1 48 0.0016 26.2 4.9 36 5-40 22-60 (158)
54 2e8o_A SAM domain and HD domai 38.0 40 0.0014 24.3 4.3 44 12-63 31-78 (103)
55 1ixs_A Holliday junction DNA h 37.8 31 0.0011 22.6 3.3 24 14-37 18-41 (62)
56 2dah_A Ubiquilin-3; UBA domain 37.6 59 0.002 20.5 4.5 40 84-131 8-48 (54)
57 2d9s_A CBL E3 ubiquitin protei 37.5 38 0.0013 21.5 3.4 20 51-70 11-30 (53)
58 1wj7_A Hypothetical protein (R 37.3 33 0.0011 25.1 3.6 42 186-234 35-77 (104)
59 1wlq_C CDT1 protein; coiled-co 36.6 56 0.0019 26.9 5.3 67 85-154 32-98 (201)
60 3dfg_A Xcrecx, regulatory prot 35.2 1.6E+02 0.0054 23.0 14.1 136 52-215 23-160 (162)
61 1uxc_A FRUR (1-57), fructose r 34.8 69 0.0024 20.9 4.7 51 91-142 6-56 (65)
62 2q0t_A Putative gamma-carboxym 34.7 2E+02 0.007 24.1 10.9 25 187-211 205-229 (263)
63 1wr1_B Ubiquitin-like protein 34.2 34 0.0011 22.1 2.9 41 187-234 14-55 (58)
64 2xzm_O RPS13E; ribosome, trans 32.6 40 0.0014 26.4 3.6 33 110-143 25-57 (153)
65 2f3n_A SH3 and multiple ankyri 32.4 1.1E+02 0.0038 20.4 5.7 44 10-63 4-51 (76)
66 3rdw_A Putative arsenate reduc 31.5 1.1E+02 0.0039 22.5 6.0 41 97-142 80-120 (121)
67 2ef8_A C.ECOT38IS, putative tr 31.3 1.1E+02 0.0038 20.0 6.6 24 221-244 51-74 (84)
68 1ich_A TNF-1, tumor necrosis f 30.8 63 0.0022 23.9 4.3 21 18-38 30-50 (112)
69 2dai_A Ubadc1, ubiquitin assoc 30.5 42 0.0014 23.4 3.1 39 192-237 31-69 (83)
70 2dkl_A Trinucleotide repeat co 29.7 44 0.0015 23.4 3.1 39 191-236 22-60 (85)
71 3ezq_A Tumor necrosis factor r 29.5 77 0.0026 23.6 4.6 24 16-39 23-46 (115)
72 2cp8_A NEXT to BRCA1 gene 1 pr 29.5 1.1E+02 0.0037 19.5 4.6 17 154-170 7-23 (54)
73 2es9_A Putative cytoplasmic pr 27.5 87 0.003 22.3 4.3 19 236-254 81-99 (115)
74 2v79_A DNA replication protein 27.0 60 0.0021 24.7 3.8 54 15-72 20-74 (135)
75 3e3v_A Regulatory protein RECX 26.9 2.3E+02 0.008 22.3 11.9 84 123-213 23-109 (177)
76 2ve7_C Kinetochore protein NUF 26.8 1.9E+02 0.0064 24.5 7.3 98 191-294 17-125 (250)
77 1whc_A RSGI RUH-027, UBA/UBX 3 26.2 39 0.0013 22.2 2.2 39 193-237 12-50 (64)
78 2dna_A Unnamed protein product 26.1 1.2E+02 0.004 20.2 4.6 42 82-131 16-58 (67)
79 1kw4_A Polyhomeotic; SAM domai 25.5 1.2E+02 0.0042 21.1 4.9 30 6-37 12-42 (89)
80 1b0n_B Protein (SINI protein); 24.9 74 0.0025 20.5 3.3 15 198-212 23-37 (57)
81 3u5c_N S27A, YS15, 40S ribosom 24.9 42 0.0014 26.2 2.5 33 110-143 23-55 (151)
82 1neq_A DNA-binding protein NER 24.8 98 0.0034 20.6 4.2 30 13-42 11-40 (74)
83 3dfg_A Xcrecx, regulatory prot 24.3 2.5E+02 0.0086 21.8 11.7 84 16-108 23-107 (162)
84 1vej_A Riken cDNA 4931431F19; 23.5 36 0.0012 23.2 1.7 40 188-234 27-67 (74)
85 2v79_A DNA replication protein 23.5 59 0.002 24.8 3.2 50 89-142 22-72 (135)
86 2o71_A Death domain-containing 23.0 1.6E+02 0.0056 21.6 5.5 53 18-70 40-105 (115)
87 3k9o_A Ubiquitin-conjugating e 22.7 65 0.0022 26.3 3.5 27 188-214 161-187 (201)
88 1q08_A Zn(II)-responsive regul 22.7 63 0.0022 22.7 3.0 21 192-212 7-27 (99)
89 2jt1_A PEFI protein; solution 22.7 1.8E+02 0.0063 19.6 5.4 16 186-201 37-52 (77)
90 1dul_A Signal recognition part 21.7 71 0.0024 21.4 2.8 32 36-73 28-59 (69)
91 2of5_A Death domain-containing 21.7 1.4E+02 0.0049 21.9 4.9 52 18-73 40-94 (114)
92 3j20_Q 30S ribosomal protein S 20.3 89 0.003 24.6 3.5 37 108-145 21-57 (158)
No 1
>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*
Probab=100.00 E-value=1.3e-52 Score=390.03 Aligned_cols=287 Identities=17% Similarity=0.259 Sum_probs=257.3
Q ss_pred cccccccccC---ChHHHHHHHhhCCCChHHHHHHHhhCCCccccCcccchhhhHHHHHhcCCChhHHHHHHhhCCcccc
Q 020786 2 LNKEHRVLES---DAYATVEFFRTNGFSDSQIKSITVKRPKFYVYNLKKCMKPKLEFFKSLGFAELQMAKFLSSQPYILE 78 (321)
Q Consensus 2 v~~~P~vL~~---~~~~~l~~L~~lG~s~~~i~~lv~~~P~lL~~~~~~~l~~~v~~L~~lG~~~~~i~~il~~~P~iL~ 78 (321)
++++|.++.+ +++++++||+++|++++||++++.++|.+|.++++ ++.|+++||+++|++++++++++.++|++|.
T Consensus 37 ~~~~p~l~~~s~~~~~~vl~fL~~~G~s~~~i~~iv~~~P~lL~~~~~-~l~p~l~fL~~lG~s~~~i~~il~~~P~iLl 115 (343)
T 3mva_O 37 RKRQPGVFHRMITNEQDLKMFLLSKGASKEVIASIISRYPRAITRTPE-NLSKRWDLWRKIVTSDLEIVNILERSPESFF 115 (343)
T ss_dssp HHHCGGGGGCSCCCHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGCCHH-HHHHHHHHHTTTSSCHHHHHHHHHHCSHHHH
T ss_pred HHhCchhhccCcccHHHHHHHHHHcCCCHHHHHHHHHhCcHHHhCCHH-HHHHHHHHHHHcCCCHHHHHHHHHHCCHHHh
Confidence 4568888876 77889999999999999999999999999999965 7999999999999999999999999999544
Q ss_pred cccc-ccchhHHHHHHHhhcCcHHHHHHHHhCCccccccchhhhhhHHHHHHHcCCC------hhhHHHhhhhCCcceee
Q 020786 79 RSLE-NHIIPCIEILRRVLDTDENVLKAIRAGCLVLEYDIEKVLEPNIAILVNHGVP------KSLVVKLMLIQPRTLLQ 151 (321)
Q Consensus 79 ~s~~-~~l~~~v~~L~~~g~~~~~v~~~l~~~P~lL~~s~~~~l~~~v~~L~~lG~~------~~~i~~ll~~~P~il~~ 151 (321)
.+.+ +++.|+++||+++|++.+++.+++.++|++++++++++ ++++++|+++|++ .+.|.+++.++|.++++
T Consensus 116 ~s~~~~~l~p~v~fL~~lGl~~~~i~~ll~~~P~il~~~~e~~-~~~v~~L~~lgv~~g~~~p~~~I~~il~~~P~iL~~ 194 (343)
T 3mva_O 116 RSNNNLNLENNIKFLYSVGLTRKCLCRLLTNAPRTFSNSLDLN-KQMVEFLQAAGLSLGHNDPADFVRKIIFKNPFILIQ 194 (343)
T ss_dssp SCCCHHHHHHHHHHHHHTTCCHHHHHHHHHHCGGGGTSCHHHH-HHHHHHHHHHHHHTTCSCHHHHHHHHHHHCGGGGGS
T ss_pred CCChHhhHHHHHHHHHHhCCCHHHHHHHHHhCChhheeCHHHh-hHHHHHHHHhCCCcCCCcHHHHHHHHHHhCChHhcC
Confidence 4445 48999999999999999999999999999999999975 9999999987764 77899999999999999
Q ss_pred cchhHHHHHHHHH-HcCCCCCch--hHHHHHHHHhhcCHHHHHHHHHHHH----HcCCCHHHHHHHhhccCccccccHHH
Q 020786 152 STARLNKIIDEVK-KLGFDPTNL--LFVLAIRSMAVMSKALWEKKLEAYM----NFGLTKDEVYSAFRRQPMFMIVSEQK 224 (321)
Q Consensus 152 ~~~~~~~~v~~l~-~lG~~~~~~--~~~~~~~~~~~~~~~~l~~~v~~l~----~lG~~~~~v~~~i~~~P~iL~~s~~~ 224 (321)
+.++++++++|++ ++|+++++. ++...++.+...+.+.++++++|+. ++||+++|+..|+.++|++|++|.++
T Consensus 195 s~~~i~~~v~fL~~~~G~~~~~~~~~i~~~~~~~l~~s~~~l~~~~~~l~e~~~~lG~s~~ev~~~v~~~P~il~~s~~~ 274 (343)
T 3mva_O 195 STKRVKANIEFLRSTFNLNSEELLVLICGPGAEILDLSNDYARRSYANIKEKLFSLGCTEEEVQKFVLSYPDVIFLAEKK 274 (343)
T ss_dssp CHHHHHHHHHHHHHHSCCCHHHHHHHHHTTTGGGGGCCTTHHHHHHHHHHHHHHTTTCCHHHHHHHHHTCGGGGGSCHHH
T ss_pred CHHHHHHHHHHHHHHcCCCHHHHHHHHhcCChHHhhccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhCCchhcccHHH
Confidence 9889999999999 599998752 2323244555567788999997776 69999999999999999999999999
Q ss_pred HhhHHHHHHHhcCCChHHHhhCCccccCCccCcchhHHHHHHHHHhCCCCCCCcccc--cccccChhhHHHHHhhh
Q 020786 225 ISKLMDCYVNKLSMEPLIISKHPYLLLFSLEKRILPRCSVLQLLMSNKVITEDFSLT--YMFKMTEKQFIERIVKK 298 (321)
Q Consensus 225 l~~k~~fL~~~~g~~~~~i~~~P~~L~~sle~ri~pR~~~l~~L~~~g~~~~~~~l~--~~l~~s~~~F~~~~~~~ 298 (321)
|+++++||.+ ||++.++|+++|++|+||+| ||+|||. +|+++|+ +++++ ++|++||++|.++|.+-
T Consensus 275 l~~k~~fl~~-mg~~~~~i~~~P~~l~~sle-ri~~R~~---~L~~~g~---~~~~~~~~~l~~s~~~F~~~~~~~ 342 (343)
T 3mva_O 275 FNDKIDCLME-ENISISQIIENPRVLDSSIS-TLKSRIK---ELVNAGC---NLSTLNITLLSWSKKRYEAKLKKL 342 (343)
T ss_dssp HHHHHHHHHT-TTCCHHHHHHSGGGGGSCHH-HHHHHHH---HHHTTTC---CSSSSCGGGGGSCHHHHHHHHHHT
T ss_pred HHHHHHHHHH-cCCCHHHHHhCCHHHhcCHH-HHHHHHH---HHHHCCC---CCCCCcchhhcCCHHHHHHHHhcc
Confidence 9999999999 99999999999999999999 9999994 6688998 56666 89999999999999763
No 2
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A
Probab=100.00 E-value=2.8e-51 Score=369.27 Aligned_cols=253 Identities=20% Similarity=0.306 Sum_probs=236.6
Q ss_pred hHHHHHHHhhCCCChHHHHHHHhhCCCccccCcccchhhhHHHHHhcCCChhHHHHHHhhCCccccccccccchhHHHHH
Q 020786 13 AYATVEFFRTNGFSDSQIKSITVKRPKFYVYNLKKCMKPKLEFFKSLGFAELQMAKFLSSQPYILERSLENHIIPCIEIL 92 (321)
Q Consensus 13 ~~~~l~~L~~lG~s~~~i~~lv~~~P~lL~~~~~~~l~~~v~~L~~lG~~~~~i~~il~~~P~iL~~s~~~~l~~~v~~L 92 (321)
-.+++++|.++|++.++|.+....+|.+|++++++++.|+++||.++|+++++|+++++++|.+|++++++ +.|+++||
T Consensus 5 ~s~~l~~L~~lGv~~~~i~k~p~~~p~lL~~~~~~~l~~~l~fL~~lG~~~~~i~~il~~~P~lL~~~~e~-l~p~v~~L 83 (270)
T 3m66_A 5 HSETLQKLVLLGVDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHAIFSEDLEN-LKTRVAYL 83 (270)
T ss_dssp HHHHHHHHHHTTCCHHHHTTSHHHHHHHHTCCHHHHTHHHHHHHHHHTCCGGGHHHHHHHCTTGGGSCHHH-HHHHHHHH
T ss_pred chHHHHHHHHcCCCHHHHhhccchhhhhhccChhhhHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCCHHH-HHHHHHHH
Confidence 34689999999999999987777777779999999999999999999999999999999999999999998 99999999
Q ss_pred HHhhcCcHHHHHHHHhCCccccccchhhhhhHHHHH-HHcCCChhhHHHhhhhCCcceeecchhHHHHHHHHHHcCCCCC
Q 020786 93 RRVLDTDENVLKAIRAGCLVLEYDIEKVLEPNIAIL-VNHGVPKSLVVKLMLIQPRTLLQSTARLNKIIDEVKKLGFDPT 171 (321)
Q Consensus 93 ~~~g~~~~~v~~~l~~~P~lL~~s~~~~l~~~v~~L-~~lG~~~~~i~~ll~~~P~il~~~~~~~~~~v~~l~~lG~~~~ 171 (321)
+++|++++++.+++.++|++|++|+++ ++++++|| +++|++.+++.+++.++|++++.+.+
T Consensus 84 ~~~Gls~~~i~~~l~~~P~lL~~s~~~-l~~~v~~L~~~lG~~~~~i~~ll~~~P~il~~s~e----------------- 145 (270)
T 3m66_A 84 HSKNFSKADVAQMVRKAPFLLNFSVER-LDNRLGFFQKELELSVKKTRDLVVRLPRLLTGSLE----------------- 145 (270)
T ss_dssp HHTTCCHHHHHHHHHHSTTGGGSCHHH-HHHHHHHHHHHHCCCHHHHHHHHHHSGGGGTSCSH-----------------
T ss_pred HHcCCCHHHHHHHHHhCCHHHcCCHHH-HHHHHHHHHHHhCCCHHHHHHHHHhCCcceeechH-----------------
Confidence 999999999999999999999999995 99999999 57999999999999999999998864
Q ss_pred chhHHHHHHHHhhcCHHHHHHHHHHH-HHcCCCHHHHHHHhhccCccccccHHHHhhHHHHHHHhcCCChHHHhhCCccc
Q 020786 172 NLLFVLAIRSMAVMSKALWEKKLEAY-MNFGLTKDEVYSAFRRQPMFMIVSEQKISKLMDCYVNKLSMEPLIISKHPYLL 250 (321)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~l~~~v~~l-~~lG~~~~~v~~~i~~~P~iL~~s~~~l~~k~~fL~~~~g~~~~~i~~~P~~L 250 (321)
+++++++++ .++||+.+|+..|+.++|+++++|.++++++++||.++||++.++|+++|++|
T Consensus 146 -----------------~~~~~v~~l~~~~G~s~~ei~~~v~~~P~il~~s~~~l~~k~~fL~~~mg~~~~~i~~~P~~l 208 (270)
T 3m66_A 146 -----------------PVKENMKVYRLELGFKHNEIQHMITRIPKMLTANKMKLTETFDFVHNVMSIPHHIIVKFPQVF 208 (270)
T ss_dssp -----------------HHHHHHHHHHHTSCCCHHHHHHHHHHCGGGGTSCHHHHHHHHHHHHTTSCCCHHHHHHCGGGG
T ss_pred -----------------HHHHHHHHHHHHcCCCHHHHHHHHHhCChhheecHHHHHHHHHHHHHHhCCCHHHHHhCchHh
Confidence 567788875 59999999999999999999999999999999999999999999999999999
Q ss_pred cCCccCcchhHHHHHHHHHhCCCCCCC---cccccccccChhhHHHHHhhhccCC
Q 020786 251 LFSLEKRILPRCSVLQLLMSNKVITED---FSLTYMFKMTEKQFIERIVKKYEHK 302 (321)
Q Consensus 251 ~~sle~ri~pR~~~l~~L~~~g~~~~~---~~l~~~l~~s~~~F~~~~~~~~~~~ 302 (321)
+||+| ||+|||+++++|.++|+.+++ +++.+++.+||++|+++|++.+.|+
T Consensus 209 ~~Sle-ri~pR~~~l~~L~~~g~~~~~~~~~~L~~~l~~sd~~F~~~~~~~~~ee 262 (270)
T 3m66_A 209 NTRLF-KVKERHLFLTYLGRAQYDPAKPNYISLDKLVSIPDEIFCEEIAKASVQD 262 (270)
T ss_dssp GSCHH-HHHHHHHHHHHHTCCCCCTTSSSCCCHHHHHHSCHHHHHHHTTCSCHHH
T ss_pred hCCHH-HHHHHHHHHHHhhccCCCCCCCCCCCHHHHhcCCHHHHHHHHhcCCHHH
Confidence 99999 999999999999999997654 6778899999999999999998443
No 3
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=100.00 E-value=1.4e-38 Score=291.94 Aligned_cols=224 Identities=13% Similarity=0.129 Sum_probs=199.7
Q ss_pred chhhhHHHHHhcCCChhHHHHHHhhCCccccccccccchhHHHHHHHhhcCcHHHHHHHHhCCccccccchhhhhhHHHH
Q 020786 48 CMKPKLEFFKSLGFAELQMAKFLSSQPYILERSLENHIIPCIEILRRVLDTDENVLKAIRAGCLVLEYDIEKVLEPNIAI 127 (321)
Q Consensus 48 ~l~~~v~~L~~lG~~~~~i~~il~~~P~iL~~s~~~~l~~~v~~L~~~g~~~~~v~~~l~~~P~lL~~s~~~~l~~~v~~ 127 (321)
.+...+.+|.++|+++++|+++++++|.++.. ++.+.+.||.++|++.++|.+++.++|++|++|++ +++++++|
T Consensus 45 ~~e~~l~~L~d~Gfs~~~i~~il~~~P~il~~----~l~~~i~~L~~LGls~e~V~kiL~k~P~lL~~s~e-~L~~~l~f 119 (335)
T 4fp9_B 45 ELERVMSSLLDMGFSNAHINELLSVRRGASLQ----QLLDIISEFILLGLNPEPVCVVLKKSPQLLKLPIM-QMRKRSSY 119 (335)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHCSSCCHH----HHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGSCHH-HHHHHHHH
T ss_pred cHHHHHHHHHHCCCCHHHHHHHHHhCcccchh----HHHHHHHHHHHcCCCHHHHHHHHHhChhhccCCHH-HHHHHHHH
Confidence 47788899999999999999999999999864 47789999999999999999999999999999997 59999999
Q ss_pred HHHcCCChhhHHHhhhhCCcceeecchhHHHHHHHHHHcCCCCCchhHHHHHHHHhhcCHHHHHHHHHHHH-HcCCCHHH
Q 020786 128 LVNHGVPKSLVVKLMLIQPRTLLQSTARLNKIIDEVKKLGFDPTNLLFVLAIRSMAVMSKALWEKKLEAYM-NFGLTKDE 206 (321)
Q Consensus 128 L~~lG~~~~~i~~ll~~~P~il~~~~~~~~~~v~~l~~lG~~~~~~~~~~~~~~~~~~~~~~l~~~v~~l~-~lG~~~~~ 206 (321)
|+++|++.+++.+++.++|++++++. +.+++++.+|. ++||+.++
T Consensus 120 L~~lGl~~~~i~~ll~~~P~lL~~s~----------------------------------e~i~~~v~~L~~~lGfS~~e 165 (335)
T 4fp9_B 120 LQKLGLGEGKLKRVLYCCPEIFTMRQ----------------------------------QDINDTVRLLKEKCLFTVQQ 165 (335)
T ss_dssp HHHTTCTTTTHHHHHHHCGGGGTSCH----------------------------------HHHHHHHHHHHHTSCCCHHH
T ss_pred HHHcCCCHHHHHHHHHhCchhhccCh----------------------------------HHHHHHHHHHHHHcCCCHHH
Confidence 99999999999999999999999885 45677777876 89999999
Q ss_pred HHHHhhccCccccccHHHHhhHHHHHHHhcCCChHHHhhCCccccCCccCcchhHHHHHHHHHhC-------CCCCCCcc
Q 020786 207 VYSAFRRQPMFMIVSEQKISKLMDCYVNKLSMEPLIISKHPYLLLFSLEKRILPRCSVLQLLMSN-------KVITEDFS 279 (321)
Q Consensus 207 v~~~i~~~P~iL~~s~~~l~~k~~fL~~~~g~~~~~i~~~P~~L~~sle~ri~pR~~~l~~L~~~-------g~~~~~~~ 279 (321)
|..||.++|+||++|.++|++|++||+++||+++++|++ |.+|+||++ ||+|||.+|+.|... +...++++
T Consensus 166 v~~mv~r~P~lL~~S~e~L~~K~efLv~~Mgl~~~eIvk-P~~l~ySLe-RIkpRH~fL~~lG~~q~~~~k~~~~~~nps 243 (335)
T 4fp9_B 166 VTKILHSCPSVLREDLGQLEYKFQYAYFRMGIKHPDIVK-SEYLQYSLT-KIKQRHIYLERLGRYQTPDKKGQTQIPNPL 243 (335)
T ss_dssp HHHHHHHCGGGGTSCHHHHHHHHHHHHTTTCCCHHHHHH-TTGGGSCHH-HHHHHHHHHHHHTSCCCCCSSSCCSSCCCC
T ss_pred HHHHHHhCChhhhCCHHHHHHHHHHHHHHhCCCHHHccc-cchhhccHH-HHHHHHHHHHHcCCccCCCcccccCCCCcc
Confidence 999999999999999999999999999999999999997 999999999 999999999877432 12223568
Q ss_pred cccccccChhhHHHHHhhhccCChhHHHHHHhc
Q 020786 280 LTYMFKMTEKQFIERIVKKYEHKVPKVVKAHQG 312 (321)
Q Consensus 280 l~~~l~~s~~~F~~~~~~~~~~~~~~~~~~~~~ 312 (321)
|.+++..||++|+.++++.+.++...+.+++..
T Consensus 244 L~~il~~sd~~F~~~vA~~s~eey~~F~k~~~~ 276 (335)
T 4fp9_B 244 LKDILRVSEAEFLARTACTSVEEFQVFKKLLAR 276 (335)
T ss_dssp HHHHTTSCHHHHHHHTSCCCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 999999999999999999986666666665544
No 4
>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*
Probab=100.00 E-value=4.9e-37 Score=285.21 Aligned_cols=273 Identities=13% Similarity=0.182 Sum_probs=233.2
Q ss_pred hHHHHHHHhhCCCChHHHHHHHhhCCCccccCcccchhhhHHHHHhcCCChhHHHHHHhhCCccccccccccchhHHHHH
Q 020786 13 AYATVEFFRTNGFSDSQIKSITVKRPKFYVYNLKKCMKPKLEFFKSLGFAELQMAKFLSSQPYILERSLENHIIPCIEIL 92 (321)
Q Consensus 13 ~~~~l~~L~~lG~s~~~i~~lv~~~P~lL~~~~~~~l~~~v~~L~~lG~~~~~i~~il~~~P~iL~~s~~~~l~~~v~~L 92 (321)
++.++++|.++|++.++ +++++|.++..+++ +..+.++||+++|++.++|++++.++|.+|..+. +++.|+++||
T Consensus 19 ~~~~v~~L~s~Gl~~~~---~~~~~p~l~~~s~~-~~~~vl~fL~~~G~s~~~i~~iv~~~P~lL~~~~-~~l~p~l~fL 93 (343)
T 3mva_O 19 NEDLLKNLLTMGVDIDM---ARKRQPGVFHRMIT-NEQDLKMFLLSKGASKEVIASIISRYPRAITRTP-ENLSKRWDLW 93 (343)
T ss_dssp -CCHHHHHHHHTCCHHH---HHHHCGGGGGCSCC-CHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGCCH-HHHHHHHHHH
T ss_pred cHHHHHHHHHcCCCHHH---HHHhCchhhccCcc-cHHHHHHHHHHcCCCHHHHHHHHHhCcHHHhCCH-HHHHHHHHHH
Confidence 34589999999999666 46789999999887 5899999999999999999999999999999995 5799999999
Q ss_pred HHhhcCcHHHHHHHHhCCc-cccccchhhhhhHHHHHHHcCCChhhHHHhhhhCCcceeecchhHHHHHHHHHHcCCCC-
Q 020786 93 RRVLDTDENVLKAIRAGCL-VLEYDIEKVLEPNIAILVNHGVPKSLVVKLMLIQPRTLLQSTARLNKIIDEVKKLGFDP- 170 (321)
Q Consensus 93 ~~~g~~~~~v~~~l~~~P~-lL~~s~~~~l~~~v~~L~~lG~~~~~i~~ll~~~P~il~~~~~~~~~~v~~l~~lG~~~- 170 (321)
+++|++++++.+++.++|+ +++.+.+++++|+++||+++|++.++|.+++.++|++++++.+++++++++++++|++.
T Consensus 94 ~~lG~s~~~i~~il~~~P~iLl~s~~~~~l~p~v~fL~~lGl~~~~i~~ll~~~P~il~~~~e~~~~~v~~L~~lgv~~g 173 (343)
T 3mva_O 94 RKIVTSDLEIVNILERSPESFFRSNNNLNLENNIKFLYSVGLTRKCLCRLLTNAPRTFSNSLDLNKQMVEFLQAAGLSLG 173 (343)
T ss_dssp TTTSSCHHHHHHHHHHCSHHHHSCCCHHHHHHHHHHHHHTTCCHHHHHHHHHHCGGGGTSCHHHHHHHHHHHHHHHHHTT
T ss_pred HHcCCCHHHHHHHHHHCCHHHhCCChHhhHHHHHHHHHHhCCCHHHHHHHHHhCChhheeCHHHhhHHHHHHHHhCCCcC
Confidence 9999999999999999999 55655545899999999999999999999999999999999998899999999887652
Q ss_pred ----Cc--h-hHHHHHHHHhhcCHHHHHHHHHHHH-HcCCCHHHHHHHhhcc-CccccccHHHHhhHHHHHHH---hcCC
Q 020786 171 ----TN--L-LFVLAIRSMAVMSKALWEKKLEAYM-NFGLTKDEVYSAFRRQ-PMFMIVSEQKISKLMDCYVN---KLSM 238 (321)
Q Consensus 171 ----~~--~-~~~~~~~~~~~~~~~~l~~~v~~l~-~lG~~~~~v~~~i~~~-P~iL~~s~~~l~~k~~fL~~---~~g~ 238 (321)
++ . ++.+.|.++ +.++++++++++||+ ++|++.+++..++.+. |.+++++.+.++++++|+.+ ++|+
T Consensus 174 ~~~p~~~I~~il~~~P~iL-~~s~~~i~~~v~fL~~~~G~~~~~~~~~i~~~~~~~l~~s~~~l~~~~~~l~e~~~~lG~ 252 (343)
T 3mva_O 174 HNDPADFVRKIIFKNPFIL-IQSTKRVKANIEFLRSTFNLNSEELLVLICGPGAEILDLSNDYARRSYANIKEKLFSLGC 252 (343)
T ss_dssp CSCHHHHHHHHHHHCGGGG-GSCHHHHHHHHHHHHHHSCCCHHHHHHHHHTTTGGGGGCCTTHHHHHHHHHHHHHHTTTC
T ss_pred CCcHHHHHHHHHHhCChHh-cCCHHHHHHHHHHHHHHcCCCHHHHHHHHhcCChHHhhccHHHHHHHHHHHHHHHHHcCC
Confidence 22 1 233345444 456999999999999 5999999999999886 58999999999999999987 6899
Q ss_pred ChHHH----hhCCccccCCccCcchhHHHHHHHHHhCCCCCCC-cccccccccChhhHHHHH
Q 020786 239 EPLII----SKHPYLLLFSLEKRILPRCSVLQLLMSNKVITED-FSLTYMFKMTEKQFIERI 295 (321)
Q Consensus 239 ~~~~i----~~~P~~L~~sle~ri~pR~~~l~~L~~~g~~~~~-~~l~~~l~~s~~~F~~~~ 295 (321)
+.+++ .++|.+|++|.++ |+++++++. +.|+...+ ...+.++..|-++-..++
T Consensus 253 s~~ev~~~v~~~P~il~~s~~~-l~~k~~fl~---~mg~~~~~i~~~P~~l~~sleri~~R~ 310 (343)
T 3mva_O 253 TEEEVQKFVLSYPDVIFLAEKK-FNDKIDCLM---EENISISQIIENPRVLDSSISTLKSRI 310 (343)
T ss_dssp CHHHHHHHHHTCGGGGGSCHHH-HHHHHHHHH---TTTCCHHHHHHSGGGGGSCHHHHHHHH
T ss_pred CHHHHHHHHHhCCchhcccHHH-HHHHHHHHH---HcCCCHHHHHhCCHHHhcCHHHHHHHH
Confidence 99876 6899999999995 999987764 46775432 345678888877766666
No 5
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A
Probab=100.00 E-value=2.1e-32 Score=246.03 Aligned_cols=191 Identities=13% Similarity=0.232 Sum_probs=176.5
Q ss_pred cccccc----ccCChH----HHHHHHhhCCCChHHHHHHHhhCCCccccCcccchhhhHHHHHhcCCChhHHHHHHhhCC
Q 020786 3 NKEHRV----LESDAY----ATVEFFRTNGFSDSQIKSITVKRPKFYVYNLKKCMKPKLEFFKSLGFAELQMAKFLSSQP 74 (321)
Q Consensus 3 ~~~P~v----L~~~~~----~~l~~L~~lG~s~~~i~~lv~~~P~lL~~~~~~~l~~~v~~L~~lG~~~~~i~~il~~~P 74 (321)
+++|.+ |+++++ ++++||+++|+++++|++++.++|.+|.+++++ +.|+++||+++|++.++|++++.++|
T Consensus 23 ~k~p~~~p~lL~~~~~~~l~~~l~fL~~lG~~~~~i~~il~~~P~lL~~~~e~-l~p~v~~L~~~Gls~~~i~~~l~~~P 101 (270)
T 3m66_A 23 EKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHAIFSEDLEN-LKTRVAYLHSKNFSKADVAQMVRKAP 101 (270)
T ss_dssp TTSHHHHHHHHTCCHHHHTHHHHHHHHHHTCCGGGHHHHHHHCTTGGGSCHHH-HHHHHHHHHHTTCCHHHHHHHHHHST
T ss_pred hhccchhhhhhccChhhhHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCCHHH-HHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 566666 998876 469999999999999999999999999999997 99999999999999999999999999
Q ss_pred ccccccccccchhHHHHH-HHhhcCcHHHHHHHHhCCccccccchhhhhhHHHHH-HHcCCChhhHHHhhhhCCcceeec
Q 020786 75 YILERSLENHIIPCIEIL-RRVLDTDENVLKAIRAGCLVLEYDIEKVLEPNIAIL-VNHGVPKSLVVKLMLIQPRTLLQS 152 (321)
Q Consensus 75 ~iL~~s~~~~l~~~v~~L-~~~g~~~~~v~~~l~~~P~lL~~s~~~~l~~~v~~L-~~lG~~~~~i~~ll~~~P~il~~~ 152 (321)
++|++|+++ ++|+++|| .++|++.+++.+++.++|.+++.+.++ ++++++++ +++|++.+++.+++.++|++++++
T Consensus 102 ~lL~~s~~~-l~~~v~~L~~~lG~~~~~i~~ll~~~P~il~~s~e~-~~~~v~~l~~~~G~s~~ei~~~v~~~P~il~~s 179 (270)
T 3m66_A 102 FLLNFSVER-LDNRLGFFQKELELSVKKTRDLVVRLPRLLTGSLEP-VKENMKVYRLELGFKHNEIQHMITRIPKMLTAN 179 (270)
T ss_dssp TGGGSCHHH-HHHHHHHHHHHHCCCHHHHHHHHHHSGGGGTSCSHH-HHHHHHHHHHTSCCCHHHHHHHHHHCGGGGTSC
T ss_pred HHHcCCHHH-HHHHHHHHHHHhCCCHHHHHHHHHhCCcceeechHH-HHHHHHHHHHHcCCCHHHHHHHHHhCChhheec
Confidence 999999985 99999999 589999999999999999999999885 99999976 679999999999999999999988
Q ss_pred chhHHHHHHHHHHcCCCCCchhHHHHHHHHhhcCHHHHHHHHHHHH-HcCCCHHHHHHHhhccCccccccHHHHhhHHHH
Q 020786 153 TARLNKIIDEVKKLGFDPTNLLFVLAIRSMAVMSKALWEKKLEAYM-NFGLTKDEVYSAFRRQPMFMIVSEQKISKLMDC 231 (321)
Q Consensus 153 ~~~~~~~v~~l~~lG~~~~~~~~~~~~~~~~~~~~~~l~~~v~~l~-~lG~~~~~v~~~i~~~P~iL~~s~~~l~~k~~f 231 (321)
. ++++++++||. ++|++.++| .++|++|++|.+.|+++..|
T Consensus 180 ~----------------------------------~~l~~k~~fL~~~mg~~~~~i----~~~P~~l~~Sleri~pR~~~ 221 (270)
T 3m66_A 180 K----------------------------------MKLTETFDFVHNVMSIPHHII----VKFPQVFNTRLFKVKERHLF 221 (270)
T ss_dssp H----------------------------------HHHHHHHHHHHTTSCCCHHHH----HHCGGGGGSCHHHHHHHHHH
T ss_pred H----------------------------------HHHHHHHHHHHHHhCCCHHHH----HhCchHhhCCHHHHHHHHHH
Confidence 5 57888899996 799998876 58999999999999999999
Q ss_pred HHH
Q 020786 232 YVN 234 (321)
Q Consensus 232 L~~ 234 (321)
+..
T Consensus 222 l~~ 224 (270)
T 3m66_A 222 LTY 224 (270)
T ss_dssp HHH
T ss_pred HHH
Confidence 876
No 6
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=99.96 E-value=4.9e-28 Score=221.91 Aligned_cols=182 Identities=13% Similarity=0.157 Sum_probs=165.2
Q ss_pred CChHHHHHHHhhCCCChHHHHHHHhhCCCccccCcccchhhhHHHHHhcCCChhHHHHHHhhCCccccccccccchhHHH
Q 020786 11 SDAYATVEFFRTNGFSDSQIKSITVKRPKFYVYNLKKCMKPKLEFFKSLGFAELQMAKFLSSQPYILERSLENHIIPCIE 90 (321)
Q Consensus 11 ~~~~~~l~~L~~lG~s~~~i~~lv~~~P~lL~~~~~~~l~~~v~~L~~lG~~~~~i~~il~~~P~iL~~s~~~~l~~~v~ 90 (321)
.+++.+++.|.++||++++|++++..+|.++.. ++.+++.||..+|++.++|+++|.++|++|+++++ +|+|+++
T Consensus 44 ~~~e~~l~~L~d~Gfs~~~i~~il~~~P~il~~----~l~~~i~~L~~LGls~e~V~kiL~k~P~lL~~s~e-~L~~~l~ 118 (335)
T 4fp9_B 44 LELERVMSSLLDMGFSNAHINELLSVRRGASLQ----QLLDIISEFILLGLNPEPVCVVLKKSPQLLKLPIM-QMRKRSS 118 (335)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHCSSCCHH----HHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGSCHH-HHHHHHH
T ss_pred ccHHHHHHHHHHCCCCHHHHHHHHHhCcccchh----HHHHHHHHHHHcCCCHHHHHHHHHhChhhccCCHH-HHHHHHH
Confidence 367788999999999999999999999998743 58899999999999999999999999999999986 6999999
Q ss_pred HHHHhhcCcHHHHHHHHhCCccccccchhhhhhHHHHHH-HcCCChhhHHHhhhhCCcceeecchhHHHHHHHHHHcCCC
Q 020786 91 ILRRVLDTDENVLKAIRAGCLVLEYDIEKVLEPNIAILV-NHGVPKSLVVKLMLIQPRTLLQSTARLNKIIDEVKKLGFD 169 (321)
Q Consensus 91 ~L~~~g~~~~~v~~~l~~~P~lL~~s~~~~l~~~v~~L~-~lG~~~~~i~~ll~~~P~il~~~~~~~~~~v~~l~~lG~~ 169 (321)
||+++|++..++.+++.++|++|+++.++ +..++.+|. ++|++.+++..||.++|++|+++.
T Consensus 119 fL~~lGl~~~~i~~ll~~~P~lL~~s~e~-i~~~v~~L~~~lGfS~~ev~~mv~r~P~lL~~S~---------------- 181 (335)
T 4fp9_B 119 YLQKLGLGEGKLKRVLYCCPEIFTMRQQD-INDTVRLLKEKCLFTVQQVTKILHSCPSVLREDL---------------- 181 (335)
T ss_dssp HHHHTTCTTTTHHHHHHHCGGGGTSCHHH-HHHHHHHHHHTSCCCHHHHHHHHHHCGGGGTSCH----------------
T ss_pred HHHHcCCCHHHHHHHHHhCchhhccChHH-HHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCCH----------------
Confidence 99999999999999999999999999885 889999996 699999999999999999999885
Q ss_pred CCchhHHHHHHHHhhcCHHHHHHHHHHHH-HcCCCHHHHHHHhhccCccccccHHHHhhHHHHHHHhcCC
Q 020786 170 PTNLLFVLAIRSMAVMSKALWEKKLEAYM-NFGLTKDEVYSAFRRQPMFMIVSEQKISKLMDCYVNKLSM 238 (321)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~l~~~v~~l~-~lG~~~~~v~~~i~~~P~iL~~s~~~l~~k~~fL~~~~g~ 238 (321)
+++++|++||. +||++.++|. + |++|+||.+.|+++..||.. +|.
T Consensus 182 ------------------e~L~~K~efLv~~Mgl~~~eIv----k-P~~l~ySLeRIkpRH~fL~~-lG~ 227 (335)
T 4fp9_B 182 ------------------GQLEYKFQYAYFRMGIKHPDIV----K-SEYLQYSLTKIKQRHIYLER-LGR 227 (335)
T ss_dssp ------------------HHHHHHHHHHHTTTCCCHHHHH----H-TTGGGSCHHHHHHHHHHHHH-HTS
T ss_pred ------------------HHHHHHHHHHHHHhCCCHHHcc----c-cchhhccHHHHHHHHHHHHH-cCC
Confidence 46888888887 8999888874 2 89999999999999999987 565
No 7
>4fzv_B Mterf domain-containing protein 2; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens}
Probab=99.29 E-value=6.1e-11 Score=93.41 Aligned_cols=177 Identities=14% Similarity=0.122 Sum_probs=130.6
Q ss_pred hHHHHHHHhhcCcHHHHHHHHhCCccccccchhhhhhHHHHHHHcCCChhhHHHhhhhCCcceeecchhHHHHHHHHHHc
Q 020786 87 PCIEILRRVLDTDENVLKAIRAGCLVLEYDIEKVLEPNIAILVNHGVPKSLVVKLMLIQPRTLLQSTARLNKIIDEVKKL 166 (321)
Q Consensus 87 ~~v~~L~~~g~~~~~v~~~l~~~P~lL~~s~~~~l~~~v~~L~~lG~~~~~i~~ll~~~P~il~~~~~~~~~~v~~l~~l 166 (321)
..+.-+.-+|++++-+.-++.+.|+++...+-. +..+-.+|+.+|+....+.+++--+|.++++..
T Consensus 35 diisefillglnpepvcvvlkkspqllklpimq-mrkrssylqklglgegklkrvlyccpeiftmrq------------- 100 (239)
T 4fzv_B 35 DIISEFILLGLNPEPVCVVLKKSPQLLKLPIMQ-MRKRSSYLQKLGLGEGKLKRVLYCCPEIFTMRQ------------- 100 (239)
T ss_dssp HHHHHHHHHCCCTTHHHHHHHSCGGGGTSCHHH-HHHHHHHHHHHTTCSSCCHHHHHHCGGGGTSCH-------------
T ss_pred HHHHHHHhhcCCCCceEEEecCCHHHhcChHHH-HHHHHHHHHHhCCCccchhhheecCcHHHHHHH-------------
Confidence 334444555566666666666666666655543 555556666666666666666666666665553
Q ss_pred CCCCCchhHHHHHHHHhhcCHHHHHHHHHHHH-HcCCCHHHHHHHhhccCccccccHHHHhhHHHHHHHhcCCChHHHhh
Q 020786 167 GFDPTNLLFVLAIRSMAVMSKALWEKKLEAYM-NFGLTKDEVYSAFRRQPMFMIVSEQKISKLMDCYVNKLSMEPLIISK 245 (321)
Q Consensus 167 G~~~~~~~~~~~~~~~~~~~~~~l~~~v~~l~-~lG~~~~~v~~~i~~~P~iL~~s~~~l~~k~~fL~~~~g~~~~~i~~ 245 (321)
..+...+..|+ ++=|+..++.+++..||.++.-....+.-|+.|-.-.||+..-+|++
T Consensus 101 ---------------------qdindtvrllkekclftvqqvtkilhscpsvlredlgqleykfqyayfrmgikhpdivk 159 (239)
T 4fzv_B 101 ---------------------QDINDTVRLLKEKCLFTVQQVTKILHSCPSVLREDLGQLEYKFQYAYFRMGIKHPDIVK 159 (239)
T ss_dssp ---------------------HHHHHHHHHHHHHSCCCHHHHHHHHHHCGGGGTSCTTHHHHHHHHHHHTSCCCHHHHHH
T ss_pred ---------------------hhHhHHHHHHHHhHHhhHHHHHHHHHhCcHHHHHHHhhhhhhHhHHHHHccCCCcchhH
Confidence 35666677777 67799999999999999999999999999999988899999999987
Q ss_pred CCccccCCccCcchhHHHHHHHHHh------CCCCC-CCcccccccccChhhHHHHHhhhcc
Q 020786 246 HPYLLLFSLEKRILPRCSVLQLLMS------NKVIT-EDFSLTYMFKMTEKQFIERIVKKYE 300 (321)
Q Consensus 246 ~P~~L~~sle~ri~pR~~~l~~L~~------~g~~~-~~~~l~~~l~~s~~~F~~~~~~~~~ 300 (321)
. .+|.||+. .|+.||-+++.|.. +|-.. +++-+.+++..|+.+|..+-.+..-
T Consensus 160 s-eylqyslt-kikqrhiylerlgryqtpdkkgqtqipnpllkdilrvseaeflartactsv 219 (239)
T 4fzv_B 160 S-EYLQYSLT-KIKQRHIYLERLGRYQTPDKKGQTQIPNPLLKDILRVSEAEFLARTACTSV 219 (239)
T ss_dssp T-TGGGSCHH-HHHHHHHHHHHHTCCCCCCSSSCCSSCCCCHHHHHTSCHHHHHHHTSCSCH
T ss_pred H-HHHHHHHH-HHHHHHhHHHHhcccCCCCccCCccCCChHHHHHHHHhHHHHHHHHhcccH
Confidence 5 89999999 69999999988853 33321 2456889999999999999887753
No 8
>4fzv_B Mterf domain-containing protein 2; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens}
Probab=98.58 E-value=8e-07 Score=70.02 Aligned_cols=119 Identities=12% Similarity=0.157 Sum_probs=99.4
Q ss_pred hhhhHHHHHhcCCChhHHHHHHhhCCccccccccccchhHHHHHHHhhcCcHHHHHHHHhCCccccccchhhhhhHHHHH
Q 020786 49 MKPKLEFFKSLGFAELQMAKFLSSQPYILERSLENHIIPCIEILRRVLDTDENVLKAIRAGCLVLEYDIEKVLEPNIAIL 128 (321)
Q Consensus 49 l~~~v~~L~~lG~~~~~i~~il~~~P~iL~~s~~~~l~~~v~~L~~~g~~~~~v~~~l~~~P~lL~~s~~~~l~~~v~~L 128 (321)
+...+.-+.-+|+.++-++-++.+.|.++...+. +++.+-.||+.+|+....+.+++..+|.++++.-. .+..++..|
T Consensus 33 lldiisefillglnpepvcvvlkkspqllklpim-qmrkrssylqklglgegklkrvlyccpeiftmrqq-dindtvrll 110 (239)
T 4fzv_B 33 LLDIISEFILLGLNPEPVCVVLKKSPQLLKLPIM-QMRKRSSYLQKLGLGEGKLKRVLYCCPEIFTMRQQ-DINDTVRLL 110 (239)
T ss_dssp TTHHHHHHHHHCCCTTHHHHHHHSCGGGGTSCHH-HHHHHHHHHHHHTTCSSCCHHHHHHCGGGGTSCHH-HHHHHHHHH
T ss_pred HHHHHHHHHhhcCCCCceEEEecCCHHHhcChHH-HHHHHHHHHHHhCCCccchhhheecCcHHHHHHHh-hHhHHHHHH
Confidence 4445555566899999999999999999998865 68889999999999989999999999999999866 488899999
Q ss_pred HH-cCCChhhHHHhhhhCCcceeecchhHHHHHHHH-HHcCCC
Q 020786 129 VN-HGVPKSLVVKLMLIQPRTLLQSTARLNKIIDEV-KKLGFD 169 (321)
Q Consensus 129 ~~-lG~~~~~i~~ll~~~P~il~~~~~~~~~~v~~l-~~lG~~ 169 (321)
++ +-++..++.+++.++|.++.-+...++-++.+. ..||+.
T Consensus 111 kekclftvqqvtkilhscpsvlredlgqleykfqyayfrmgik 153 (239)
T 4fzv_B 111 KEKCLFTVQQVTKILHSCPSVLREDLGQLEYKFQYAYFRMGIK 153 (239)
T ss_dssp HHHSCCCHHHHHHHHHHCGGGGTSCTTHHHHHHHHHHHTSCCC
T ss_pred HHhHHhhHHHHHHHHHhCcHHHHHHHhhhhhhHhHHHHHccCC
Confidence 76 889999999999999999988877777776664 356664
No 9
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=91.10 E-value=0.26 Score=31.85 Aligned_cols=35 Identities=9% Similarity=0.218 Sum_probs=25.3
Q ss_pred HhhCCCccccCcccchhhhHHHHHhcCCChhHHHHHHhh
Q 020786 34 TVKRPKFYVYNLKKCMKPKLEFFKSLGFAELQMAKFLSS 72 (321)
Q Consensus 34 v~~~P~lL~~~~~~~l~~~v~~L~~lG~~~~~i~~il~~ 72 (321)
+-.+|.+-... +..+++||++-|++.++|...+.+
T Consensus 19 FL~dp~V~~sp----~~~K~~FL~sKGLt~~EI~~Al~r 53 (54)
T 3ff5_A 19 FLQNSRVRQSP----LATRRAFLKKKGLTDEEIDLAFQQ 53 (54)
T ss_dssp HHHCTTGGGSC----HHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HhCChhhhcCC----HHHHHHHHHHcCCCHHHHHHHHHc
Confidence 45577775544 667888888888888888777765
No 10
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=89.39 E-value=0.87 Score=29.35 Aligned_cols=35 Identities=14% Similarity=0.130 Sum_probs=19.5
Q ss_pred HhhCCccccccccccchhHHHHHHHhhcCcHHHHHHHHh
Q 020786 70 LSSQPYILERSLENHIIPCIEILRRVLDTDENVLKAIRA 108 (321)
Q Consensus 70 l~~~P~iL~~s~~~~l~~~v~~L~~~g~~~~~v~~~l~~ 108 (321)
+..+|.+-..+ +..+++||++-|+++++|..++.+
T Consensus 19 FL~dp~V~~sp----~~~K~~FL~sKGLt~~EI~~Al~r 53 (54)
T 3ff5_A 19 FLQNSRVRQSP----LATRRAFLKKKGLTDEEIDLAFQQ 53 (54)
T ss_dssp HHHCTTGGGSC----HHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HhCChhhhcCC----HHHHHHHHHHcCCCHHHHHHHHHc
Confidence 34455555543 344566666666666666655554
No 11
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=89.19 E-value=3.6 Score=31.10 Aligned_cols=98 Identities=11% Similarity=0.114 Sum_probs=60.3
Q ss_pred HHHHHHhhCCCChHHHHHHHhhCCCccccCcccchhhhHHHHH------hcCCChhHHHHHHhhCCccccccccccchhH
Q 020786 15 ATVEFFRTNGFSDSQIKSITVKRPKFYVYNLKKCMKPKLEFFK------SLGFAELQMAKFLSSQPYILERSLENHIIPC 88 (321)
Q Consensus 15 ~~l~~L~~lG~s~~~i~~lv~~~P~lL~~~~~~~l~~~v~~L~------~lG~~~~~i~~il~~~P~iL~~s~~~~l~~~ 88 (321)
..++-|.++||+...+.+.+..+-. +....++||. +.|++..++...+..+..--... ..-...
T Consensus 10 ~~v~~l~~MGFp~~~~~kAl~~~g~--------~~e~amewL~~h~~L~d~~~d~~~~e~~l~~~~~~~~~~--~~~~~~ 79 (118)
T 4ae4_A 10 QCVETVVNMGYSYECVLRAMKAAGA--------NIEQILDYLFAHGQLCEKGFDPLLVEEALEMHQCSEEKM--MEFLQL 79 (118)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHCS--------CHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHCSSCHHHH--HHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHCc--------CHHHHHHHHHHhchhcccCCChhhhHHHHHhccCCcccc--ccCHHH
Confidence 4688888899998888888776521 3555666664 35677777766665432111000 011234
Q ss_pred HHHHHHhhcCcHHHHHHHHhCCccccccchhhhhhHHHHHHH
Q 020786 89 IEILRRVLDTDENVLKAIRAGCLVLEYDIEKVLEPNIAILVN 130 (321)
Q Consensus 89 v~~L~~~g~~~~~v~~~l~~~P~lL~~s~~~~l~~~v~~L~~ 130 (321)
+.-|.++|++.+.+.+++..+ +.++...++||..
T Consensus 80 v~~L~eMGF~~~~a~~AL~~~--------~nd~erAlewL~~ 113 (118)
T 4ae4_A 80 MSKFKEMGFELKDIKEVLLLH--------NNDQDNALEDLMA 113 (118)
T ss_dssp HHHHHHTTCCHHHHHHHHHHT--------TTCHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHc--------CCCHHHHHHHHHH
Confidence 677777888877777777764 2246667777753
No 12
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=88.53 E-value=0.59 Score=31.77 Aligned_cols=36 Identities=8% Similarity=0.220 Sum_probs=27.1
Q ss_pred HhhCCCccccCcccchhhhHHHHHhcCCChhHHHHHHhhC
Q 020786 34 TVKRPKFYVYNLKKCMKPKLEFFKSLGFAELQMAKFLSSQ 73 (321)
Q Consensus 34 v~~~P~lL~~~~~~~l~~~v~~L~~lG~~~~~i~~il~~~ 73 (321)
+-.+|.+-... +..+++||++-|++.++|...+.+.
T Consensus 24 FLqdp~V~~sp----~~~K~~FL~sKGLt~eEI~~Al~ra 59 (70)
T 2w84_A 24 FLQNSRVRQSP----LATRRAFLKKKGLTDEEIDMAFQQS 59 (70)
T ss_dssp HHCSTTGGGSC----HHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HhCChhhhhCC----HHHHHHHHHHcCCCHHHHHHHHHHc
Confidence 45677775544 6678888888888888888887764
No 13
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=84.09 E-value=12 Score=28.25 Aligned_cols=95 Identities=9% Similarity=0.076 Sum_probs=54.8
Q ss_pred hhhHHHHHhcCCChhHHHHHHhhCCccccccccccchhHHHHHHHh------hcCcHHHHHHHHhCCccccccch--hhh
Q 020786 50 KPKLEFFKSLGFAELQMAKFLSSQPYILERSLENHIIPCIEILRRV------LDTDENVLKAIRAGCLVLEYDIE--KVL 121 (321)
Q Consensus 50 ~~~v~~L~~lG~~~~~i~~il~~~P~iL~~s~~~~l~~~v~~L~~~------g~~~~~v~~~l~~~P~lL~~s~~--~~l 121 (321)
...++-|.++|++...+.+.+..+-. +....++||... |.++.++-..+..+.. +.. ...
T Consensus 9 ~~~v~~l~~MGFp~~~~~kAl~~~g~--------~~e~amewL~~h~~L~d~~~d~~~~e~~l~~~~~----~~~~~~~~ 76 (118)
T 4ae4_A 9 RQCVETVVNMGYSYECVLRAMKAAGA--------NIEQILDYLFAHGQLCEKGFDPLLVEEALEMHQC----SEEKMMEF 76 (118)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHCS--------CHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHCSS----CHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHCc--------CHHHHHHHHHHhchhcccCCChhhhHHHHHhccC----CccccccC
Confidence 44567777888888888887655421 355566666543 3455555555554321 111 112
Q ss_pred hhHHHHHHHcCCChhhHHHhhhhCCcceeecchhHHHHHHHH
Q 020786 122 EPNIAILVNHGVPKSLVVKLMLIQPRTLLQSTARLNKIIDEV 163 (321)
Q Consensus 122 ~~~v~~L~~lG~~~~~i~~ll~~~P~il~~~~~~~~~~v~~l 163 (321)
...+.-|.++||+.+.+.+.+..+. ..+...++||
T Consensus 77 ~~~v~~L~eMGF~~~~a~~AL~~~~-------nd~erAlewL 111 (118)
T 4ae4_A 77 LQLMSKFKEMGFELKDIKEVLLLHN-------NDQDNALEDL 111 (118)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHTT-------TCHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcC-------CCHHHHHHHH
Confidence 3456777778888887777665542 3445555555
No 14
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=82.53 E-value=2.6 Score=28.57 Aligned_cols=36 Identities=14% Similarity=0.136 Sum_probs=23.8
Q ss_pred HhhCCccccccccccchhHHHHHHHhhcCcHHHHHHHHhC
Q 020786 70 LSSQPYILERSLENHIIPCIEILRRVLDTDENVLKAIRAG 109 (321)
Q Consensus 70 l~~~P~iL~~s~~~~l~~~v~~L~~~g~~~~~v~~~l~~~ 109 (321)
+..+|.+-..+ +..+++||++-|++.++|..++.+.
T Consensus 24 FLqdp~V~~sp----~~~K~~FL~sKGLt~eEI~~Al~ra 59 (70)
T 2w84_A 24 FLQNSRVRQSP----LATRRAFLKKKGLTDEEIDMAFQQS 59 (70)
T ss_dssp HHCSTTGGGSC----HHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HhCChhhhhCC----HHHHHHHHHHcCCCHHHHHHHHHHc
Confidence 45566666554 4457777777777777777777664
No 15
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=82.31 E-value=2.8 Score=38.35 Aligned_cols=36 Identities=6% Similarity=0.076 Sum_probs=27.4
Q ss_pred HHHHHHHhhCCCChHHHHHHHhhCCCccccCcccchhhhHHHHH
Q 020786 14 YATVEFFRTNGFSDSQIKSITVKRPKFYVYNLKKCMKPKLEFFK 57 (321)
Q Consensus 14 ~~~l~~L~~lG~s~~~i~~lv~~~P~lL~~~~~~~l~~~v~~L~ 57 (321)
+..++-|.++||++.++.+.++..- ++...-++||.
T Consensus 169 ~~~i~~l~~MGf~~~~~~~AL~a~~--------nn~~~A~e~L~ 204 (368)
T 1oqy_A 169 ETMLTEIMSMGYERERVVAALRASY--------NNPHRAVEYLL 204 (368)
T ss_dssp HHHHHHHHTTTCCSHHHHHHHHHSC--------SSTTHHHHTTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcC--------CCHHHHHHHHH
Confidence 3579999999999999999888553 24555667775
No 16
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=71.08 E-value=3.1 Score=38.02 Aligned_cols=38 Identities=18% Similarity=0.208 Sum_probs=29.7
Q ss_pred hhhhHHHHHhcCCChhHHHHHHhhCCccccccccccchhHHHHHHH
Q 020786 49 MKPKLEFFKSLGFAELQMAKFLSSQPYILERSLENHIIPCIEILRR 94 (321)
Q Consensus 49 l~~~v~~L~~lG~~~~~i~~il~~~P~iL~~s~~~~l~~~v~~L~~ 94 (321)
....|+-|.++|++++++.+.+...- ++....++||-+
T Consensus 168 ~~~~i~~l~~MGf~~~~~~~AL~a~~--------nn~~~A~e~L~~ 205 (368)
T 1oqy_A 168 YETMLTEIMSMGYERERVVAALRASY--------NNPHRAVEYLLT 205 (368)
T ss_dssp HHHHHHHHHTTTCCSHHHHHHHHHSC--------SSTTHHHHTTTT
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHcC--------CCHHHHHHHHHh
Confidence 67789999999999999999986543 256667788743
No 17
>3idw_A Actin cytoskeleton-regulatory complex protein SLA; clathrin adaptor, endocytosis, SAM domain, yeast, actin-BIND membrane, endosome; 1.85A {Saccharomyces cerevisiae}
Probab=68.98 E-value=11 Score=25.71 Aligned_cols=53 Identities=23% Similarity=0.380 Sum_probs=31.0
Q ss_pred HHHHHhhCCCChHHHHHHHhhCCCccccCcccchhhhH--HHHHhcCCChhHHHHHHh
Q 020786 16 TVEFFRTNGFSDSQIKSITVKRPKFYVYNLKKCMKPKL--EFFKSLGFAELQMAKFLS 71 (321)
Q Consensus 16 ~l~~L~~lG~s~~~i~~lv~~~P~lL~~~~~~~l~~~v--~~L~~lG~~~~~i~~il~ 71 (321)
.++||.+.|+......+--..+- ......++.|-+ +.|+++|+...+|.+++.
T Consensus 5 Wf~FFl~aGv~~~~c~rYA~~F~---~~ri~e~mL~Dl~~~~Lr~LGi~eGDIIrVmk 59 (72)
T 3idw_A 5 WFEFFLNCGVDVSNCQRYTINFD---REQLTEDMMPDINNSMLRTLGLREGDIVRVMK 59 (72)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHH---HTTCCGGGGGGCCHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHcCCChHHHHHHHHHHH---HccCCHHHHhhCCHHHHHHcCCchhhHHHHHH
Confidence 46788888888776654322211 112223344433 678888888777777654
No 18
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=68.56 E-value=5.3 Score=24.97 Aligned_cols=39 Identities=18% Similarity=0.353 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHhhccCccccccHHHHhhHHHHHHH
Q 020786 189 LWEKKLEAYMNFGLTKDEVYSAFRRQPMFMIVSEQKISKLMDCYVN 234 (321)
Q Consensus 189 ~l~~~v~~l~~lG~~~~~v~~~i~~~P~iL~~s~~~l~~k~~fL~~ 234 (321)
.-.++++-|.+|||+++++...+..+- ..+.+.++||.+
T Consensus 7 ~~~~~i~~L~~MGF~~~~a~~AL~~~~-------~n~e~A~e~L~~ 45 (49)
T 1ify_A 7 EYETMLTEIMSMGYERERVVAALRASY-------NNPHRAVEYLLT 45 (49)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHTTT-------SCSHHHHHHHHH
T ss_pred cCHHHHHHHHHcCCCHHHHHHHHHHhC-------CCHHHHHHHHHh
Confidence 456778889999999999988876432 235667788876
No 19
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=67.72 E-value=5 Score=25.63 Aligned_cols=39 Identities=15% Similarity=0.262 Sum_probs=17.6
Q ss_pred HHHHHHcCCCHHHHHHHhhccCccccccHHHHhhHHHHHHHhcCCC
Q 020786 194 LEAYMNFGLTKDEVYSAFRRQPMFMIVSEQKISKLMDCYVNKLSME 239 (321)
Q Consensus 194 v~~l~~lG~~~~~v~~~i~~~P~iL~~s~~~l~~k~~fL~~~~g~~ 239 (321)
++-|.++||+++.+...+.+- .-..|++.++||.+ |+++
T Consensus 13 lq~L~eMGFd~erae~Alk~T------g~~Gle~AmewL~k-~~~~ 51 (54)
T 2cos_A 13 LQELVNAGCDQEMAGRALKQT------GSRSIEAALEYISK-MSGP 51 (54)
T ss_dssp HHHHHHHHCCHHHHHHHHHHH------TSCCHHHHHHHHHH-HSCS
T ss_pred HHHHHHcCCCHHHHHHHHHHh------CcccHHHHHHHHHH-hcCC
Confidence 344455555555444333210 11125556666654 4544
No 20
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=66.40 E-value=6.6 Score=24.17 Aligned_cols=35 Identities=14% Similarity=0.394 Sum_probs=23.3
Q ss_pred HHHHHHHHcCCCHHHHHHHhhccCccccccHHHHhhHHHHHHH
Q 020786 192 KKLEAYMNFGLTKDEVYSAFRRQPMFMIVSEQKISKLMDCYVN 234 (321)
Q Consensus 192 ~~v~~l~~lG~~~~~v~~~i~~~P~iL~~s~~~l~~k~~fL~~ 234 (321)
..++-|.++||+++++.+.+..+ + .+..-++||.+
T Consensus 11 ~~v~~L~~MGF~~~~a~~AL~~~----~----n~e~A~~~L~~ 45 (47)
T 2ekk_A 11 QQLQQLMDMGFTREHAMEALLNT----S----TMEQATEYLLT 45 (47)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHS----C----SHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHc----C----CHHHHHHHHHc
Confidence 45667778888888877776654 1 35566666654
No 21
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=64.80 E-value=4.7 Score=24.27 Aligned_cols=36 Identities=14% Similarity=0.254 Sum_probs=24.1
Q ss_pred HHHHHHHHcCCCHHHHHHHhhccCccccccHHHHhhHHHHHHH
Q 020786 192 KKLEAYMNFGLTKDEVYSAFRRQPMFMIVSEQKISKLMDCYVN 234 (321)
Q Consensus 192 ~~v~~l~~lG~~~~~v~~~i~~~P~iL~~s~~~l~~k~~fL~~ 234 (321)
++++-|.++||+++++.+.+..+ +. .+..-++||.+
T Consensus 6 ~~i~~L~~MGF~~~~a~~AL~~~----~~---n~e~A~~~L~~ 41 (43)
T 2g3q_A 6 LAVEELSGMGFTEEEAHNALEKC----NW---DLEAATNFLLD 41 (43)
T ss_dssp HHHHHHHTTTSCHHHHHHHHHHH----TS---CHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHh----Cc---CHHHHHHHHHc
Confidence 56788889999998887776543 11 25555666654
No 22
>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae}
Probab=64.10 E-value=22 Score=35.21 Aligned_cols=44 Identities=14% Similarity=0.168 Sum_probs=23.0
Q ss_pred HcCCCHHHHHHHhhccCcccc-ccHHHHhhHHHHHHHhcCCChHHHhh
Q 020786 199 NFGLTKDEVYSAFRRQPMFMI-VSEQKISKLMDCYVNKLSMEPLIISK 245 (321)
Q Consensus 199 ~lG~~~~~v~~~i~~~P~iL~-~s~~~l~~k~~fL~~~~g~~~~~i~~ 245 (321)
..|+|.++|..|-... =+ .-.|.++.-...|....|++.++++.
T Consensus 591 a~gLS~~qVVaIAsn~---GGkQALeaV~~llpvL~~~~~Ls~~qVVa 635 (1047)
T 3ugm_A 591 AHGLTQVQVVAIASNI---GGKQALETVQRLLPVLCQAHGLTPAQVVA 635 (1047)
T ss_dssp HHCCCSHHHHTTTTST---TSHHHHHHHHHHHHHHHHHSCCCSHHHHH
T ss_pred HhCCCHHHeeeeccCC---chHHHHHHHHHhhHHHHhhccCCHHHeee
Confidence 5777777776542100 00 01233444455555567888777653
No 23
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=63.91 E-value=9.2 Score=26.89 Aligned_cols=40 Identities=8% Similarity=0.094 Sum_probs=29.7
Q ss_pred HHHHHHHHHcCCCHHHHHHHhhccCccccccHHHHhhHHHHHHHhcC
Q 020786 191 EKKLEAYMNFGLTKDEVYSAFRRQPMFMIVSEQKISKLMDCYVNKLS 237 (321)
Q Consensus 191 ~~~v~~l~~lG~~~~~v~~~i~~~P~iL~~s~~~l~~k~~fL~~~~g 237 (321)
.++++-|.+|||+++++..+++..- ..+.+.++||....|
T Consensus 30 ee~I~~Lv~MGF~~~~A~~AL~~t~-------gdve~A~e~L~sh~~ 69 (83)
T 1veg_A 30 QESINQLVYMGFDTVVAEAALRVFG-------GNVQLAAQTLAHHGG 69 (83)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHTT-------TCHHHHHHHHHHHTS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcC-------CCHHHHHHHHHhCCC
Confidence 4567788889999998888766322 237788999988766
No 24
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=63.45 E-value=5.6 Score=25.21 Aligned_cols=25 Identities=24% Similarity=0.258 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHhh
Q 020786 188 ALWEKKLEAYMNFGLTKDEVYSAFR 212 (321)
Q Consensus 188 ~~l~~~v~~l~~lG~~~~~v~~~i~ 212 (321)
+.+...++-|.++||+++++.+.+.
T Consensus 9 ~~~~~~Ia~Lm~mGFsr~~ai~AL~ 33 (52)
T 2ooa_A 9 ENVDAKIAKLMGEGYAFEEVKRALE 33 (52)
T ss_dssp --CHHHHHHHHHTTCCHHHHHHHHH
T ss_pred CChHHHHHHHHHcCCCHHHHHHHHH
Confidence 4555788888999999999887664
No 25
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=62.53 E-value=7.9 Score=24.58 Aligned_cols=41 Identities=12% Similarity=0.296 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHcCC-CHHHHHHHhhccCccccccHHHHhhHHHHHHH
Q 020786 187 KALWEKKLEAYMNFGL-TKDEVYSAFRRQPMFMIVSEQKISKLMDCYVN 234 (321)
Q Consensus 187 ~~~l~~~v~~l~~lG~-~~~~v~~~i~~~P~iL~~s~~~l~~k~~fL~~ 234 (321)
++....+++-|.+||| +++.+...+..+ -..+...++||.+
T Consensus 8 e~~~~~~l~~L~~MGF~~~~~~~~AL~~t-------~gnve~Ave~L~~ 49 (53)
T 2knz_A 8 EVRFQQQLEQLNSMGFINREANLQALIAT-------GGDINAAIERLLG 49 (53)
T ss_dssp HHHHHHHHHHHHTTTCCCHHHHHHHHHHH-------TSCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHcCCCCHHHHHHHHHHh-------CCCHHHHHHHHHH
Confidence 4566777777788888 666655544321 1235566676665
No 26
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=61.70 E-value=8.5 Score=22.45 Aligned_cols=23 Identities=17% Similarity=0.293 Sum_probs=16.3
Q ss_pred HHHHHHHHHcCCCHHHHHHHhhc
Q 020786 191 EKKLEAYMNFGLTKDEVYSAFRR 213 (321)
Q Consensus 191 ~~~v~~l~~lG~~~~~v~~~i~~ 213 (321)
.++++-|.++||+++++...+..
T Consensus 5 ~~~i~~L~~mGf~~~~a~~AL~~ 27 (40)
T 1z96_A 5 NSKIAQLVSMGFDPLEAAQALDA 27 (40)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHH
Confidence 34677778888888877766553
No 27
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=60.81 E-value=11 Score=24.74 Aligned_cols=39 Identities=15% Similarity=0.389 Sum_probs=28.2
Q ss_pred HHHHHHHHHcCCCHHHHHHHhhccCccccccHHHHhhHHHHHHHhc
Q 020786 191 EKKLEAYMNFGLTKDEVYSAFRRQPMFMIVSEQKISKLMDCYVNKL 236 (321)
Q Consensus 191 ~~~v~~l~~lG~~~~~v~~~i~~~P~iL~~s~~~l~~k~~fL~~~~ 236 (321)
..+++-|.+|||+++++.+.+..+- . .+...++||.+.+
T Consensus 10 ~~~v~~L~~MGF~~~~a~~AL~~t~----~---nve~A~e~L~~~~ 48 (63)
T 2dak_A 10 EDCVTTIVSMGFSRDQALKALRATN----N---SLERAVDWIFSHI 48 (63)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHTT----S---CSHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcC----C---CHHHHHHHHHhCC
Confidence 3457778889999988888877642 1 3677788887754
No 28
>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae}
Probab=59.87 E-value=1.3e+02 Score=29.91 Aligned_cols=78 Identities=18% Similarity=0.152 Sum_probs=37.3
Q ss_pred cCCChhHHHHHHhhCCccccccccccchhHHHHHH-HhhcCcHHHHHHHHhCCccccccchhhhhhHHHHHH-HcCCChh
Q 020786 59 LGFAELQMAKFLSSQPYILERSLENHIIPCIEILR-RVLDTDENVLKAIRAGCLVLEYDIEKVLEPNIAILV-NHGVPKS 136 (321)
Q Consensus 59 lG~~~~~i~~il~~~P~iL~~s~~~~l~~~v~~L~-~~g~~~~~v~~~l~~~P~lL~~s~~~~l~~~v~~L~-~lG~~~~ 136 (321)
.|++++++..|-+.+----. ++ .+....--|. ..|+++++|.++-..+--- .-++ .+...+..|. +.|++++
T Consensus 287 ~gls~~qvvaIAsn~GGkQA--Le-tV~~llp~L~~~~gltp~qvVaIAsn~GGk--QALe-~V~~llpvL~~~~gls~~ 360 (1047)
T 3ugm_A 287 HGLTPDQVVAIASHGGGKQA--LE-TVQRLLPVLCQAHGLTPDQVVAIASHDGGK--QALE-TVQRLLPVLCQAHGLTPD 360 (1047)
T ss_dssp HCCCHHHHHHHHSSTTHHHH--HH-HHHHHHHHHHHHTCCCHHHHHHHHSSSSCH--HHHH-HHHHHHHHHHTTSCCCHH
T ss_pred ccCCHHHHHHHHhcCchHHH--HH-HHHHHHHHHHhhcCCCHHHheeecccCccH--HHHH-HHHHHhhhhhhhccCCHH
Confidence 67777777766543321000 01 0111111222 3567777777665443211 1122 2444445554 4788888
Q ss_pred hHHHhh
Q 020786 137 LVVKLM 142 (321)
Q Consensus 137 ~i~~ll 142 (321)
++..+-
T Consensus 361 qvVaIA 366 (1047)
T 3ugm_A 361 QVVAIA 366 (1047)
T ss_dssp HHHHHH
T ss_pred Hhhhhh
Confidence 877653
No 29
>2xzm_O RPS13E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_O 1ysh_E 3jyv_O* 1s1h_O
Probab=59.02 E-value=21 Score=27.92 Aligned_cols=32 Identities=19% Similarity=0.169 Sum_probs=15.2
Q ss_pred cccccCChHHH---HHHHhhCCCChHHHHHHHhhC
Q 020786 6 HRVLESDAYAT---VEFFRTNGFSDSQIKSITVKR 37 (321)
Q Consensus 6 P~vL~~~~~~~---l~~L~~lG~s~~~i~~lv~~~ 37 (321)
|.=+..+++++ +--|..-|++++||+-+++..
T Consensus 25 P~W~~~~~eeVe~~I~klakkG~tpSqIG~iLRD~ 59 (153)
T 2xzm_O 25 PKWLHMTPSTVVDLSVKLAKKGLTPSQIGVILRDQ 59 (153)
T ss_dssp CSSCCCCHHHHHHHHHHHHHTTCCHHHHHHHHHHS
T ss_pred CccccCCHHHHHHHHHHHHHCCCCHHHhhhHHhhc
Confidence 44444444443 233444555555555555544
No 30
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=58.06 E-value=15 Score=24.21 Aligned_cols=44 Identities=14% Similarity=0.245 Sum_probs=25.3
Q ss_pred HHcCCChhhHHHhhhhCCcceeecchhHHHHHHHHHHcCCCCCc
Q 020786 129 VNHGVPKSLVVKLMLIQPRTLLQSTARLNKIIDEVKKLGFDPTN 172 (321)
Q Consensus 129 ~~lG~~~~~i~~ll~~~P~il~~~~~~~~~~v~~l~~lG~~~~~ 172 (321)
+..|++...|.+++...+.-...++++.....+.++++|+.++.
T Consensus 8 ~~aGVS~sTVSrvLng~~~~~~vs~et~~rI~~aa~~lgY~pn~ 51 (65)
T 1uxc_A 8 RLAGVSRTTASYVINGKAKQYRVSDKTVEKVMAVVREHNYHPNA 51 (65)
T ss_dssp HHHTSCHHHHHHHHHTCTTTTTCTTHHHHHHHHHHHHHTCCCC-
T ss_pred HHHCcCHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHhCCCccH
Confidence 45677777777777665521223444444445556677776653
No 31
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=56.58 E-value=14 Score=24.26 Aligned_cols=39 Identities=18% Similarity=0.390 Sum_probs=29.4
Q ss_pred HHHHHHHHHcCCCHHHHHHHhhccCccccccHHHHhhHHHHHHHhc
Q 020786 191 EKKLEAYMNFGLTKDEVYSAFRRQPMFMIVSEQKISKLMDCYVNKL 236 (321)
Q Consensus 191 ~~~v~~l~~lG~~~~~v~~~i~~~P~iL~~s~~~l~~k~~fL~~~~ 236 (321)
...|+-+.+|||+++++.+.++... ..+.+..|||...+
T Consensus 20 ~e~V~~LvsMGFs~~qA~kALKat~-------~NvErAaDWLFSH~ 58 (63)
T 1wgn_A 20 RQCVETVVNMGYSYECVLRAMKKKG-------ENIEQILDYLFAHS 58 (63)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHC-------SCHHHHHHHHHHHS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcC-------CCHHHHHHHHHhCC
Confidence 3458888899999999988776432 34778888887764
No 32
>3u5c_N S27A, YS15, 40S ribosomal protein S13; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_O 3o30_G 3o2z_G 3u5g_N 3iz6_O 3jyv_O* 1ysh_E 1s1h_O
Probab=56.34 E-value=22 Score=27.83 Aligned_cols=34 Identities=12% Similarity=0.312 Sum_probs=15.0
Q ss_pred CCccccCcccchhhhHHHHHhcCCChhHHHHHHhh
Q 020786 38 PKFYVYNLKKCMKPKLEFFKSLGFAELQMAKFLSS 72 (321)
Q Consensus 38 P~lL~~~~~~~l~~~v~~L~~lG~~~~~i~~il~~ 72 (321)
|..+..+.+ ++...|--|..-|+++++|+-++..
T Consensus 23 P~W~~~~~e-eVe~~I~klakkG~tpSqIG~iLRD 56 (151)
T 3u5c_N 23 PAWFKLSSE-SVIEQIVKYARKGLTPSQIGVLLRD 56 (151)
T ss_dssp CSSCCSCHH-HHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred CCCcCCCHH-HHHHHHHHHHHCCCCHHHhhhHHhc
Confidence 344444443 2444444444444444444444433
No 33
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=53.99 E-value=10 Score=25.01 Aligned_cols=37 Identities=14% Similarity=0.304 Sum_probs=27.2
Q ss_pred HHHHHHHHcCCCHHHHHHHhhccCccccccHHHHhhHHHHHHHh
Q 020786 192 KKLEAYMNFGLTKDEVYSAFRRQPMFMIVSEQKISKLMDCYVNK 235 (321)
Q Consensus 192 ~~v~~l~~lG~~~~~v~~~i~~~P~iL~~s~~~l~~k~~fL~~~ 235 (321)
+.++-|.+|||+++++.+.+..+= ..+...++||...
T Consensus 11 ~~I~~L~~MGF~~~~a~~AL~~~~-------~nve~A~e~L~~~ 47 (63)
T 1wji_A 11 KALKHITEMGFSKEASRQALMDNG-------NNLEAALNVLLTS 47 (63)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHTT-------SCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhC-------CCHHHHHHHHHHC
Confidence 457788899999998887766431 2467778888874
No 34
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=52.76 E-value=9.3 Score=26.15 Aligned_cols=38 Identities=11% Similarity=0.295 Sum_probs=28.1
Q ss_pred HHHHHHHHHHcCCCHHHHHHHhhccCccccccHHHHhhHHHHHHH
Q 020786 190 WEKKLEAYMNFGLTKDEVYSAFRRQPMFMIVSEQKISKLMDCYVN 234 (321)
Q Consensus 190 l~~~v~~l~~lG~~~~~v~~~i~~~P~iL~~s~~~l~~k~~fL~~ 234 (321)
..++|+-|.+|||+++++...+..+= ..+...++||..
T Consensus 29 ~ee~I~~L~eMGF~r~~a~~AL~~~~-------~nve~Ave~Ll~ 66 (73)
T 1vg5_A 29 SEEQIQKLVAMGFDRTQVEVALAAAD-------DDLTVAVEILMS 66 (73)
T ss_dssp CHHHHHHHHTTTCCHHHHHHHHHHHT-------SCHHHHHHHHHT
T ss_pred cHHHHHHHHHcCCCHHHHHHHHHHhC-------CCHHHHHHHHHH
Confidence 45677888899999999988776421 236677888876
No 35
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=52.39 E-value=15 Score=24.25 Aligned_cols=37 Identities=11% Similarity=0.257 Sum_probs=23.7
Q ss_pred HHHHHHHcCCCHHHHHHHhhccCccccccHHHHhhHHHHHHHh
Q 020786 193 KLEAYMNFGLTKDEVYSAFRRQPMFMIVSEQKISKLMDCYVNK 235 (321)
Q Consensus 193 ~v~~l~~lG~~~~~v~~~i~~~P~iL~~s~~~l~~k~~fL~~~ 235 (321)
.++-|.+|||+++++.+.+..+-. ..+..-++||.+.
T Consensus 22 ~i~~L~~MGF~~~~a~~AL~~t~~------~nve~A~ewL~~~ 58 (64)
T 2cpw_A 22 ALDVLLSMGFPRARAQKALASTGG------RSVQTACDWLFSH 58 (64)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHTTT------SCHHHHHHHHHSC
T ss_pred HHHHHHHcCCCHHHHHHHHHHcCC------CCHHHHHHHHHhC
Confidence 456677788888877776653221 2466677777664
No 36
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=51.08 E-value=17 Score=23.00 Aligned_cols=13 Identities=15% Similarity=-0.054 Sum_probs=6.2
Q ss_pred chhHHHHHHHhhc
Q 020786 85 IIPCIEILRRVLD 97 (321)
Q Consensus 85 l~~~v~~L~~~g~ 97 (321)
....++-|.++|+
T Consensus 11 ~~~~l~~L~~MGF 23 (53)
T 2knz_A 11 FQQQLEQLNSMGF 23 (53)
T ss_dssp HHHHHHHHHTTTC
T ss_pred HHHHHHHHHHcCC
Confidence 3344455555555
No 37
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=50.22 E-value=18 Score=22.14 Aligned_cols=24 Identities=17% Similarity=0.299 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHhh
Q 020786 189 LWEKKLEAYMNFGLTKDEVYSAFR 212 (321)
Q Consensus 189 ~l~~~v~~l~~lG~~~~~v~~~i~ 212 (321)
.+...++-|.++||+.+++.+.+.
T Consensus 3 ~~e~~I~~L~s~Gf~~~~~~rAL~ 26 (46)
T 2oo9_A 3 QLSSEIENLMSQGYSYQDIQKALV 26 (46)
T ss_dssp HHHHHHHHHHHTTBCHHHHHHHHH
T ss_pred chHHHHHHHHHcCCCHHHHHHHHH
Confidence 356677888899999998877654
No 38
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=49.73 E-value=21 Score=24.36 Aligned_cols=40 Identities=10% Similarity=0.131 Sum_probs=27.6
Q ss_pred HHHHHHHHcCCCHHHHHHHhhccCccccccHHHHhhHHHHHHHhcC
Q 020786 192 KKLEAYMNFGLTKDEVYSAFRRQPMFMIVSEQKISKLMDCYVNKLS 237 (321)
Q Consensus 192 ~~v~~l~~lG~~~~~v~~~i~~~P~iL~~s~~~l~~k~~fL~~~~g 237 (321)
..++-|.+|||+++++.+.+..+-. ..+..-++||.+.+.
T Consensus 11 ~~v~~L~~MGF~~~~a~~AL~~t~n------~~ve~A~ewL~~~~~ 50 (74)
T 2dag_A 11 SVIIQLVEMGFPMDACRKAVYYTGN------SGAEAAMNWVMSHMD 50 (74)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHTS------CCHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCC------CCHHHHHHHHHhCCC
Confidence 4566778899998888877653321 137778899988643
No 39
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=47.75 E-value=33 Score=22.68 Aligned_cols=42 Identities=17% Similarity=0.319 Sum_probs=28.7
Q ss_pred HHHcCCChhhHHHhhhhCCcceeecchhHHHHHHHHHHcCCCCCc
Q 020786 128 LVNHGVPKSLVVKLMLIQPRTLLQSTARLNKIIDEVKKLGFDPTN 172 (321)
Q Consensus 128 L~~lG~~~~~i~~ll~~~P~il~~~~~~~~~~v~~l~~lG~~~~~ 172 (321)
-+..|++...|.+++...|. .++++.....+.+.++|+.++.
T Consensus 16 A~~aGVS~sTVSr~ln~~~~---vs~~t~~rV~~~a~~lgY~pn~ 57 (67)
T 2l8n_A 16 ALKAKVSTATVSRALMNPDK---VSQATRNRVEKAAREVGYLPQP 57 (67)
T ss_dssp HHHTTCCHHHHHHTTTCCCC---SCHHHHHHHHHHHHHHCCCC--
T ss_pred HHHHCCCHHHHHHHHcCCCC---CCHHHHHHHHHHHHHhCCCccH
Confidence 35689999999998877664 3555555555667888887753
No 40
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=47.43 E-value=1.1e+02 Score=24.44 Aligned_cols=83 Identities=6% Similarity=-0.046 Sum_probs=45.0
Q ss_pred HHHHHhhCCCChHHHHHHHhhCCCccccCcccchhhhHHHHHhcCC-ChhHHHHHHhhCCccc-cccccccchhHHHHHH
Q 020786 16 TVEFFRTNGFSDSQIKSITVKRPKFYVYNLKKCMKPKLEFFKSLGF-AELQMAKFLSSQPYIL-ERSLENHIIPCIEILR 93 (321)
Q Consensus 16 ~l~~L~~lG~s~~~i~~lv~~~P~lL~~~~~~~l~~~v~~L~~lG~-~~~~i~~il~~~P~iL-~~s~~~~l~~~v~~L~ 93 (321)
++.+|..-.-|..++.+-+... ..+.+ .+...|+.|.+.|+ ++...+....+.-.-. ..+. .....-|+
T Consensus 24 Al~~Ls~r~~S~~EL~~KL~~k----g~~~~-~ie~vl~~L~~~g~ldD~rfA~~~vr~~~~~~~~G~----~~I~~eL~ 94 (177)
T 3e3v_A 24 ALNYLSYQLRTRKEVEDKLRSL----DIHED-YISEIINKLIDLDLINDKNYAESYVRTMMNTSDKGP----KVIKLNLS 94 (177)
T ss_dssp HHHHHHSSCCCHHHHHTTSGGG----TCCHH-HHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHCCCCH----HHHHHHHH
T ss_pred HHHHhccccccHHHHHHHHHHc----CCCHH-HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcccccH----HHHHHHHH
Confidence 4677777777777777655443 23433 57777788887776 4555555443321111 1110 11124466
Q ss_pred HhhcCcHHHHHHHH
Q 020786 94 RVLDTDENVLKAIR 107 (321)
Q Consensus 94 ~~g~~~~~v~~~l~ 107 (321)
.-|++.+.|..++.
T Consensus 95 ~KGI~~~~I~~al~ 108 (177)
T 3e3v_A 95 KKGIDDNIAEDALI 108 (177)
T ss_dssp TTTCCHHHHHHHHT
T ss_pred HcCCCHHHHHHHHH
Confidence 66666666655554
No 41
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=47.12 E-value=22 Score=22.65 Aligned_cols=25 Identities=16% Similarity=0.291 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHhh
Q 020786 188 ALWEKKLEAYMNFGLTKDEVYSAFR 212 (321)
Q Consensus 188 ~~l~~~v~~l~~lG~~~~~v~~~i~ 212 (321)
+.....++-|.++||+++++.+.+.
T Consensus 5 ~p~e~~Ia~L~smGfsr~da~~AL~ 29 (56)
T 2juj_A 5 PQLSSEIENLMSQGYSYQDIQKALV 29 (56)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CCChHHHHHHHHcCCCHHHHHHHHH
Confidence 3456678888899999998887654
No 42
>4hpz_A Dtale2; DNA binding protein, N-terminal domain; 2.20A {Xanthomonas}
Probab=47.08 E-value=1.7e+02 Score=26.65 Aligned_cols=55 Identities=15% Similarity=0.201 Sum_probs=24.7
Q ss_pred HHHHHHHHHH-HcCCCHHHHHHHhhccCccccccHHHHhhHHHHHHHhcCCChHHHhh
Q 020786 189 LWEKKLEAYM-NFGLTKDEVYSAFRRQPMFMIVSEQKISKLMDCYVNKLSMEPLIISK 245 (321)
Q Consensus 189 ~l~~~v~~l~-~lG~~~~~v~~~i~~~P~iL~~s~~~l~~k~~fL~~~~g~~~~~i~~ 245 (321)
.++.....+. ..|++.++|..+-...-- ..-.+.+++-..-|....|++.++|+.
T Consensus 196 aV~~llpvl~~~~~Ls~aqVVaIAsn~GG--kQALeaV~~llpvl~~~~gls~aqVVa 251 (463)
T 4hpz_A 196 TVQRLLPVLCQAHGLTPDQVVAIASHDGG--KQALETVQRLLPVLCQDHGLTPQQVVA 251 (463)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHSSTTH--HHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHhhccccCCHHHHHHHhhcccc--HHHHHHHHhhhhhhhhhccCCHHHHHH
Confidence 3444444444 367777766654221000 001123333344444445777777643
No 43
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=46.83 E-value=16 Score=24.81 Aligned_cols=38 Identities=21% Similarity=0.412 Sum_probs=27.2
Q ss_pred HHHHHHHHHcCCCHHHHHHHhhccCccccccHHHHhhHHHHHHHh
Q 020786 191 EKKLEAYMNFGLTKDEVYSAFRRQPMFMIVSEQKISKLMDCYVNK 235 (321)
Q Consensus 191 ~~~v~~l~~lG~~~~~v~~~i~~~P~iL~~s~~~l~~k~~fL~~~ 235 (321)
..+++-|.++||+++++.+.++.+- ..+...++||.+.
T Consensus 30 ~~~v~~L~~MGF~~~~a~~AL~~t~-------~nve~Ave~L~~~ 67 (73)
T 1wiv_A 30 QSSVDTLLSFGFAEDVARKALKASG-------GDIEKATDWVFNN 67 (73)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHTT-------SCHHHHHHHHHHS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC-------CCHHHHHHHHHhC
Confidence 3457778899999998888776432 2466778888764
No 44
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=42.60 E-value=8.4 Score=23.81 Aligned_cols=22 Identities=18% Similarity=0.321 Sum_probs=14.8
Q ss_pred HHHHHHHHcCCCHHHHHHHhhc
Q 020786 192 KKLEAYMNFGLTKDEVYSAFRR 213 (321)
Q Consensus 192 ~~v~~l~~lG~~~~~v~~~i~~ 213 (321)
+.|+-|.++||++.++.+.+..
T Consensus 6 eaI~rL~~mGF~~~~a~~Al~a 27 (47)
T 1dv0_A 6 EAIERLKALGFPESLVIQAYFA 27 (47)
T ss_dssp HHHTTTTTTTCCHHHHHHHHTT
T ss_pred HHHHHHHHcCCCHHHHHHHHHH
Confidence 3456667888888877766543
No 45
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=42.55 E-value=21 Score=22.45 Aligned_cols=23 Identities=17% Similarity=0.440 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHcCC-CHHHHHHHh
Q 020786 189 LWEKKLEAYMNFGL-TKDEVYSAF 211 (321)
Q Consensus 189 ~l~~~v~~l~~lG~-~~~~v~~~i 211 (321)
....+++-|.+||| +++.+.+.+
T Consensus 11 ~~~~~l~~L~~MGF~~~~~~~~AL 34 (52)
T 2jy5_A 11 RFQQQLEQLSAMGFLNREANLQAL 34 (52)
T ss_dssp TTHHHHHHHHHTTCCCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHH
Confidence 34566677777777 555544443
No 46
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=41.57 E-value=53 Score=21.50 Aligned_cols=35 Identities=11% Similarity=0.263 Sum_probs=19.4
Q ss_pred HHHHHhhCCCChHHHHHHHhhCCCccccCcccchhhhHHHHHh
Q 020786 16 TVEFFRTNGFSDSQIKSITVKRPKFYVYNLKKCMKPKLEFFKS 58 (321)
Q Consensus 16 ~l~~L~~lG~s~~~i~~lv~~~P~lL~~~~~~~l~~~v~~L~~ 58 (321)
.|+-|.++||+..++.+.+..+- +++..-++||.+
T Consensus 12 ~I~~L~~MGF~~~~a~~AL~~~~--------~nve~A~e~L~~ 46 (63)
T 1wji_A 12 ALKHITEMGFSKEASRQALMDNG--------NNLEAALNVLLT 46 (63)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHTT--------SCHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHhC--------CCHHHHHHHHHH
Confidence 45666666666666665555431 235555556553
No 47
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=41.37 E-value=28 Score=21.97 Aligned_cols=22 Identities=18% Similarity=0.218 Sum_probs=11.1
Q ss_pred hhHHHHHhcCCChhHHHHHHhh
Q 020786 51 PKLEFFKSLGFAELQMAKFLSS 72 (321)
Q Consensus 51 ~~v~~L~~lG~~~~~i~~il~~ 72 (321)
..|+-|.++|++++++.+.+..
T Consensus 13 ~~Ia~Lm~mGFsr~~ai~AL~~ 34 (52)
T 2ooa_A 13 AKIAKLMGEGYAFEEVKRALEI 34 (52)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHH
Confidence 4455555555555555554433
No 48
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=41.03 E-value=30 Score=22.79 Aligned_cols=39 Identities=10% Similarity=0.173 Sum_probs=26.2
Q ss_pred HHHHHHHcCCCHHHHHHHhhccCccccccHHHHhhHHHHHHHhcC
Q 020786 193 KLEAYMNFGLTKDEVYSAFRRQPMFMIVSEQKISKLMDCYVNKLS 237 (321)
Q Consensus 193 ~v~~l~~lG~~~~~v~~~i~~~P~iL~~s~~~l~~k~~fL~~~~g 237 (321)
.++-|.+|||+++.+.+.+...-. ..++.-++||.+.+.
T Consensus 12 ~v~~L~~MGF~~~~a~~AL~~t~n------~~~e~A~~wL~~h~~ 50 (64)
T 2crn_A 12 LLEPLLAMGFPVHTALKALAATGR------KTAEEALAWLHDHCN 50 (64)
T ss_dssp SHHHHHHTSCCHHHHHHHHHHHTS------CCHHHHHHHHHHHSS
T ss_pred HHHHHHHcCCCHHHHHHHHHHhCC------CCHHHHHHHHHhCCC
Confidence 356677889998888776652211 247778888887643
No 49
>3oq9_A Tumor necrosis factor receptor superfamily member; apoptosis, DISC, FAS; 6.80A {Mus musculus}
Probab=40.48 E-value=59 Score=22.81 Aligned_cols=24 Identities=21% Similarity=0.343 Sum_probs=15.4
Q ss_pred HHHHHhhCCCChHHHHHHHhhCCC
Q 020786 16 TVEFFRTNGFSDSQIKSITVKRPK 39 (321)
Q Consensus 16 ~l~~L~~lG~s~~~i~~lv~~~P~ 39 (321)
+-+|-+.+|+|+.+|..+-..+|.
T Consensus 15 wK~~~R~LGlse~~Id~I~~~~~~ 38 (86)
T 3oq9_A 15 AKKFARENNIKEGKIDEIMHDSIQ 38 (86)
T ss_dssp HHHHHHTTTSCHHHHHHHHHTCTT
T ss_pred HHHHHHHcCCCHhHHHHHHHhCCC
Confidence 345556677777777766666665
No 50
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=39.23 E-value=39 Score=23.61 Aligned_cols=39 Identities=8% Similarity=0.208 Sum_probs=25.4
Q ss_pred HHHHHHHHcCCCHHHHHHHhhccCccccccHHHHhhHHHHHHHhc
Q 020786 192 KKLEAYMNFGLTKDEVYSAFRRQPMFMIVSEQKISKLMDCYVNKL 236 (321)
Q Consensus 192 ~~v~~l~~lG~~~~~v~~~i~~~P~iL~~s~~~l~~k~~fL~~~~ 236 (321)
..++-|.+|||+++.+.+.+...- -..+...++||.+.+
T Consensus 31 ~~v~~L~~MGF~~~~a~~AL~~t~------n~n~e~A~ewL~~h~ 69 (84)
T 1vek_A 31 EIVAQLVSMGFSQLHCQKAAINTS------NAGVEEAMNWLLSHM 69 (84)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHTT------TCCHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHc------CCCHHHHHHHHHhCC
Confidence 345677788888888777654221 124667788888754
No 51
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=39.15 E-value=29 Score=21.20 Aligned_cols=17 Identities=18% Similarity=0.399 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHcCCCH
Q 020786 188 ALWEKKLEAYMNFGLTK 204 (321)
Q Consensus 188 ~~l~~~v~~l~~lG~~~ 204 (321)
+...++++-|.+|||+.
T Consensus 5 ~~~~~~i~~L~~MGF~d 21 (46)
T 2bwb_A 5 ERYEHQLRQLNDMGFFD 21 (46)
T ss_dssp HHTHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHcCCCc
Confidence 45566777777777753
No 52
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=38.43 E-value=44 Score=22.69 Aligned_cols=36 Identities=14% Similarity=0.242 Sum_probs=23.1
Q ss_pred HHHHHHhhCCCChHHHHHHHhhCCCccccCcccchhhhHHHHHh
Q 020786 15 ATVEFFRTNGFSDSQIKSITVKRPKFYVYNLKKCMKPKLEFFKS 58 (321)
Q Consensus 15 ~~l~~L~~lG~s~~~i~~lv~~~P~lL~~~~~~~l~~~v~~L~~ 58 (321)
..|+-|.++||+.+++.+.++.+ .+++..-++||.+
T Consensus 31 e~I~~L~eMGF~r~~a~~AL~~~--------~~nve~Ave~Ll~ 66 (73)
T 1vg5_A 31 EQIQKLVAMGFDRTQVEVALAAA--------DDDLTVAVEILMS 66 (73)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHH--------TSCHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHh--------CCCHHHHHHHHHH
Confidence 45777777777777777766643 1246666666664
No 53
>3j20_Q 30S ribosomal protein S15P/S13E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=38.05 E-value=48 Score=26.15 Aligned_cols=36 Identities=19% Similarity=0.164 Sum_probs=22.0
Q ss_pred ccccccCChHHH---HHHHhhCCCChHHHHHHHhhCCCc
Q 020786 5 EHRVLESDAYAT---VEFFRTNGFSDSQIKSITVKRPKF 40 (321)
Q Consensus 5 ~P~vL~~~~~~~---l~~L~~lG~s~~~i~~lv~~~P~l 40 (321)
-|.=+..+++++ +--|..-|+++++|+-+++....+
T Consensus 22 ~P~W~~~~~eev~~~i~klakkG~~pSqIG~~LRD~~gi 60 (158)
T 3j20_Q 22 PPIWVEYTVEEIENLVVKLRKEGYSTAMIGTILRDQYGI 60 (158)
T ss_dssp CCSSSCCCHHHHHHHHHHHHHHTCCHHHHHHHHHHTTCC
T ss_pred CCCCcCCCHHHHHHHHHHHHHCCCCHHHhhHHHhccCCC
Confidence 455556666665 334445677777777777665443
No 54
>2e8o_A SAM domain and HD domain-containing protein 1; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=37.95 E-value=40 Score=24.34 Aligned_cols=44 Identities=16% Similarity=0.287 Sum_probs=27.3
Q ss_pred ChHHHHHHHhhCCCChHHHHHHHhhCC----CccccCcccchhhhHHHHHhcCCCh
Q 020786 12 DAYATVEFFRTNGFSDSQIKSITVKRP----KFYVYNLKKCMKPKLEFFKSLGFAE 63 (321)
Q Consensus 12 ~~~~~l~~L~~lG~s~~~i~~lv~~~P----~lL~~~~~~~l~~~v~~L~~lG~~~ 63 (321)
+++.|.+||+++|++.......+..+- .++..+ -+-|+++|+..
T Consensus 31 s~~~V~~WL~~lgl~~~~y~~~F~~~~I~G~~Ll~Lt--------~~dLkeLGI~~ 78 (103)
T 2e8o_A 31 GPEQVCSFLRRGGFEEPVLLKNIRENEITGALLPCLD--------ESRFENLGVSS 78 (103)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHTTCCTTTTTTCC--------HHHHHHTTCCC
T ss_pred CHHHHHHHHHHcCCChHHHHHHHHHcCCCHHHHHhCC--------HHHHHHcCCCC
Confidence 455688999999997545666665442 222222 35678888854
No 55
>1ixs_A Holliday junction DNA helicase RUVA; heterodimeric protein complex, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.20A {Thermus thermophilus} SCOP: a.5.1.1
Probab=37.76 E-value=31 Score=22.55 Aligned_cols=24 Identities=17% Similarity=0.313 Sum_probs=20.2
Q ss_pred HHHHHHHhhCCCChHHHHHHHhhC
Q 020786 14 YATVEFFRTNGFSDSQIKSITVKR 37 (321)
Q Consensus 14 ~~~l~~L~~lG~s~~~i~~lv~~~ 37 (321)
+.+++-|..+|+++.++.+++..-
T Consensus 18 ~ea~~AL~aLGY~~~ea~kav~~v 41 (62)
T 1ixs_A 18 EEAVMALAALGFKEAQARAVVLDL 41 (62)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHH
Confidence 357899999999999999988763
No 56
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=37.61 E-value=59 Score=20.55 Aligned_cols=40 Identities=20% Similarity=0.164 Sum_probs=23.1
Q ss_pred cchhHHHHHHHhhcCcHH-HHHHHHhCCccccccchhhhhhHHHHHHHc
Q 020786 84 HIIPCIEILRRVLDTDEN-VLKAIRAGCLVLEYDIEKVLEPNIAILVNH 131 (321)
Q Consensus 84 ~l~~~v~~L~~~g~~~~~-v~~~l~~~P~lL~~s~~~~l~~~v~~L~~l 131 (321)
...+.++-|.++|+++++ ..+++... ..++...++||-+.
T Consensus 8 ~~~~~l~~L~~MGF~d~~~n~~AL~~~--------~Gdv~~Ave~L~~~ 48 (54)
T 2dah_A 8 HFQVQLEQLRSMGFLNREANLQALIAT--------GGDVDAAVEKLRQS 48 (54)
T ss_dssp SSHHHHHHHHHHTCCCHHHHHHHHHHH--------TSCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCCcHHHHHHHHHHc--------CCCHHHHHHHHHhC
Confidence 456667777777776654 34555432 22455666776654
No 57
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=37.52 E-value=38 Score=21.47 Aligned_cols=20 Identities=25% Similarity=0.378 Sum_probs=9.3
Q ss_pred hhHHHHHhcCCChhHHHHHH
Q 020786 51 PKLEFFKSLGFAELQMAKFL 70 (321)
Q Consensus 51 ~~v~~L~~lG~~~~~i~~il 70 (321)
..|+-|.++|++++++.+.+
T Consensus 11 ~~I~~L~~lGF~r~~ai~AL 30 (53)
T 2d9s_A 11 SEIERLMSQGYSYQDIQKAL 30 (53)
T ss_dssp HHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHH
Confidence 33444444444444444444
No 58
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=37.28 E-value=33 Score=25.08 Aligned_cols=42 Identities=17% Similarity=0.363 Sum_probs=30.4
Q ss_pred CHHHHHHHHHHHHHc-CCCHHHHHHHhhccCccccccHHHHhhHHHHHHH
Q 020786 186 SKALWEKKLEAYMNF-GLTKDEVYSAFRRQPMFMIVSEQKISKLMDCYVN 234 (321)
Q Consensus 186 ~~~~l~~~v~~l~~l-G~~~~~v~~~i~~~P~iL~~s~~~l~~k~~fL~~ 234 (321)
+...+.++|..|.++ ||+++++..++..+= -.+...+++|.+
T Consensus 35 ~d~d~eekVk~L~EmtG~seeeAr~AL~~~n-------gDl~~AI~~Lle 77 (104)
T 1wj7_A 35 NDADFEEKVKQLIDITGKNQDECVIALHDCN-------GDVNRAINVLLE 77 (104)
T ss_dssp CCHHHHHHHHHHHHHTCCCHHHHHHHHHHHT-------SCHHHHHHHHHT
T ss_pred CcccHHHHHHHHHHhhCCCHHHHHHHHHHcC-------CCHHHHHHHHHh
Confidence 345678899999988 999999987664321 126667777876
No 59
>1wlq_C CDT1 protein; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_C*
Probab=36.57 E-value=56 Score=26.89 Aligned_cols=67 Identities=4% Similarity=0.130 Sum_probs=55.4
Q ss_pred chhHHHHHHHhhcCcHHHHHHHHhCCccccccchhhhhhHHHHHHHcCCChhhHHHhhhhCCcceeecch
Q 020786 85 IIPCIEILRRVLDTDENVLKAIRAGCLVLEYDIEKVLEPNIAILVNHGVPKSLVVKLMLIQPRTLLQSTA 154 (321)
Q Consensus 85 l~~~v~~L~~~g~~~~~v~~~l~~~P~lL~~s~~~~l~~~v~~L~~lG~~~~~i~~ll~~~P~il~~~~~ 154 (321)
|=.+.+.|.++.-.-+.+..++...-...+++ ++++.|+-+..--|+.+.+++|..-+|.....+.+
T Consensus 32 LP~kY~~L~e~F~~ldtv~~ml~~R~~~~Tf~---~ik~~VE~~trr~F~~~hLaQIk~IyPeay~l~~~ 98 (201)
T 1wlq_C 32 LPYKYQVLVEMFHSMDTIVSMLHNRSETVTFA---KVKQGVQEMMRKRFEERNVGQIKTVYPMSYRFRQE 98 (201)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHTTCCCBHH---HHHHHHHHHHTSCCCHHHHHHHHHHCTTSEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHcCCccccHH---HHHHHHHHHhcCCcCHHHHHHHHHhccCceEEEee
Confidence 55677788887777788888888777777776 68999999988899999999999999988876654
No 60
>3dfg_A Xcrecx, regulatory protein RECX; RECX RECA, homologous recombination, tandem repeats, three-helix bundle, cytoplasm; 1.50A {Xanthomonas campestris PV}
Probab=35.22 E-value=1.6e+02 Score=22.96 Aligned_cols=136 Identities=15% Similarity=0.089 Sum_probs=71.8
Q ss_pred hHHHHHhcCCChhHHHHHHhhCCccccccccccchhHHHHHHHhhc-CcHHHHHHHHhCCccccccchhhhhhHHHHHHH
Q 020786 52 KLEFFKSLGFAELQMAKFLSSQPYILERSLENHIIPCIEILRRVLD-TDENVLKAIRAGCLVLEYDIEKVLEPNIAILVN 130 (321)
Q Consensus 52 ~v~~L~~lG~~~~~i~~il~~~P~iL~~s~~~~l~~~v~~L~~~g~-~~~~v~~~l~~~P~lL~~s~~~~l~~~v~~L~~ 130 (321)
-+.+|..-.-|..++.+-+.+. +++ +..+...+++|.+.|. ++...+....+.=.--+.... ....-|..
T Consensus 23 Al~~Ls~r~~s~~EL~~KL~~k----g~~-~e~Ie~vl~~l~~~g~ldD~rfA~~~v~~~~~~~~G~~----~I~~eL~~ 93 (162)
T 3dfg_A 23 ALGLLVHREHSKKELNRKLQAR----GIE-PEAAQAAVERLAGEGWQDDVRFAASVVRNRASSGYGPL----HIRAELGT 93 (162)
T ss_dssp HHHHHHHSCCCHHHHHHHHHHT----TCC-HHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHTTTCCHH----HHHHHHHH
T ss_pred HHHHhhchhhhHHHHHHHHHhc----CCC-HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHccccHH----HHHHHHHH
Confidence 3455555555666665555443 223 2346677778888775 444555444332110122221 23345677
Q ss_pred cCCChhhHHHhhhhCCcceeecchhHHHHHHHH-HHcCCCCCchhHHHHHHHHhhcCHHHHHHHHHHHHHcCCCHHHHHH
Q 020786 131 HGVPKSLVVKLMLIQPRTLLQSTARLNKIIDEV-KKLGFDPTNLLFVLAIRSMAVMSKALWEKKLEAYMNFGLTKDEVYS 209 (321)
Q Consensus 131 lG~~~~~i~~ll~~~P~il~~~~~~~~~~v~~l-~~lG~~~~~~~~~~~~~~~~~~~~~~l~~~v~~l~~lG~~~~~v~~ 209 (321)
-|++.+.|...+.... .+........+ +..|-... .....-+..+.||..-||+.+.|..
T Consensus 94 KGI~~~~I~~al~~~~------~de~e~a~~l~~Kk~~~~~~-------------~~~~~k~K~~~~L~rrGF~~~~I~~ 154 (162)
T 3dfg_A 94 HGLDSDAVSAAMATFE------GDWTENALDLIRRRFGEDGP-------------VDLAQRRKAADLLARRGFDGNSIRL 154 (162)
T ss_dssp TTCCHHHHHHHHTTCC------SCHHHHHHHHHHHHHCTTCC-------------CSHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred cCCCHHHHHHHHHhCc------HhHHHHHHHHHHHhcCCCCC-------------CCHHHHHHHHHHHHHCCCCHHHHHH
Confidence 8998888888776643 11122222222 22332110 0123344556899999999999998
Q ss_pred HhhccC
Q 020786 210 AFRRQP 215 (321)
Q Consensus 210 ~i~~~P 215 (321)
++...|
T Consensus 155 ~l~~~~ 160 (162)
T 3dfg_A 155 ATRFDL 160 (162)
T ss_dssp HTTC--
T ss_pred HHhcCc
Confidence 876544
No 61
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=34.79 E-value=69 Score=20.90 Aligned_cols=51 Identities=14% Similarity=0.065 Sum_probs=29.9
Q ss_pred HHHHhhcCcHHHHHHHHhCCccccccchhhhhhHHHHHHHcCCChhhHHHhh
Q 020786 91 ILRRVLDTDENVLKAIRAGCLVLEYDIEKVLEPNIAILVNHGVPKSLVVKLM 142 (321)
Q Consensus 91 ~L~~~g~~~~~v~~~l~~~P~lL~~s~~~~l~~~v~~L~~lG~~~~~i~~ll 142 (321)
.-+..|+|...|.+++...+.-...+.+ +.+...+..+++|..++..++-+
T Consensus 6 iA~~aGVS~sTVSrvLng~~~~~~vs~e-t~~rI~~aa~~lgY~pn~~a~~l 56 (65)
T 1uxc_A 6 IARLAGVSRTTASYVINGKAKQYRVSDK-TVEKVMAVVREHNYHPNAVAAGL 56 (65)
T ss_dssp HHHHHTSCHHHHHHHHHTCTTTTTCTTH-HHHHHHHHHHHHTCCCC------
T ss_pred HHHHHCcCHHHHHHHHcCCCCCCCCCHH-HHHHHHHHHHHhCCCccHHHHHH
Confidence 3456788888888888877621223433 45556666778888877766544
No 62
>2q0t_A Putative gamma-carboxymuconolactone decarboxylase; AHPD-like fold, structural genomics, joint center for struct genomics, JCSG; 1.70A {Burkholderia xenovorans} SCOP: a.152.1.1
Probab=34.66 E-value=2e+02 Score=24.07 Aligned_cols=25 Identities=12% Similarity=0.248 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHh
Q 020786 187 KALWEKKLEAYMNFGLTKDEVYSAF 211 (321)
Q Consensus 187 ~~~l~~~v~~l~~lG~~~~~v~~~i 211 (321)
...++..+.-..+.|.++++|..++
T Consensus 205 ~~cl~~H~~~a~~~G~t~eei~e~~ 229 (263)
T 2q0t_A 205 VPGLKLHIRNALRYGATAEELMELL 229 (263)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 5677777887788888888888877
No 63
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=34.22 E-value=34 Score=22.12 Aligned_cols=41 Identities=22% Similarity=0.346 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHcCCC-HHHHHHHhhccCccccccHHHHhhHHHHHHH
Q 020786 187 KALWEKKLEAYMNFGLT-KDEVYSAFRRQPMFMIVSEQKISKLMDCYVN 234 (321)
Q Consensus 187 ~~~l~~~v~~l~~lG~~-~~~v~~~i~~~P~iL~~s~~~l~~k~~fL~~ 234 (321)
++..+++++-|.+|||+ ++.+.+.+. .+-..+.+.++||..
T Consensus 14 e~~~~~qi~~L~~MGF~d~~~~~~AL~-------~~~gnve~Ave~L~~ 55 (58)
T 1wr1_B 14 EERYEHQLRQLNDMGFFDFDRNVAALR-------RSGGSVQGALDSLLN 55 (58)
T ss_dssp HHHTHHHHHHHHHHTCCCHHHHHHHHH-------HHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHH-------HhCCCHHHHHHHHHh
Confidence 45667777888888875 434344332 122235556666654
No 64
>2xzm_O RPS13E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_O 1ysh_E 3jyv_O* 1s1h_O
Probab=32.60 E-value=40 Score=26.39 Aligned_cols=33 Identities=12% Similarity=0.023 Sum_probs=15.4
Q ss_pred CccccccchhhhhhHHHHHHHcCCChhhHHHhhh
Q 020786 110 CLVLEYDIEKVLEPNIAILVNHGVPKSLVVKLML 143 (321)
Q Consensus 110 P~lL~~s~~~~l~~~v~~L~~lG~~~~~i~~ll~ 143 (321)
|..+.++.++ ++..+--|..-|+++++|.-++.
T Consensus 25 P~W~~~~~ee-Ve~~I~klakkG~tpSqIG~iLR 57 (153)
T 2xzm_O 25 PKWLHMTPST-VVDLSVKLAKKGLTPSQIGVILR 57 (153)
T ss_dssp CSSCCCCHHH-HHHHHHHHHHTTCCHHHHHHHHH
T ss_pred CccccCCHHH-HHHHHHHHHHCCCCHHHhhhHHh
Confidence 4444444443 44444444444555555544443
No 65
>2f3n_A SH3 and multiple ankyrin repeat domains 3; postsynaptic density, SAM domain, shank, scaffolding protein, structural protein; 2.10A {Rattus norvegicus} SCOP: a.60.1.2 PDB: 2f44_A
Probab=32.45 E-value=1.1e+02 Score=20.40 Aligned_cols=44 Identities=9% Similarity=0.116 Sum_probs=27.3
Q ss_pred cCChHHHHHHHhhCCCChHHHHHHHhhCC----CccccCcccchhhhHHHHHhcCCCh
Q 020786 10 ESDAYATVEFFRTNGFSDSQIKSITVKRP----KFYVYNLKKCMKPKLEFFKSLGFAE 63 (321)
Q Consensus 10 ~~~~~~~l~~L~~lG~s~~~i~~lv~~~P----~lL~~~~~~~l~~~v~~L~~lG~~~ 63 (321)
.=+++.|.+||.++|++ +....+..+- .++..+. +-|+++|++.
T Consensus 4 ~Ws~~~V~~WL~~lgl~--~Y~~~F~~~~idg~~Ll~Lt~--------~dL~~lGI~~ 51 (76)
T 2f3n_A 4 LWSKFDVGDWLESIHLG--EHRDRFEDHEIEGAHLPALTK--------EDFVELGVTR 51 (76)
T ss_dssp GCCHHHHHHHHHHTTCG--GGHHHHHHTTCCGGGGGGCCH--------HHHHHTTCCC
T ss_pred hCCHHHHHHHHHHCCCH--HHHHHHHHcCCCHHHHccCCH--------HHHHHcCCCC
Confidence 34788889999999986 4555554431 2222222 3467889874
No 66
>3rdw_A Putative arsenate reductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 2.20A {Yersinia pestis}
Probab=31.54 E-value=1.1e+02 Score=22.51 Aligned_cols=41 Identities=20% Similarity=0.300 Sum_probs=25.0
Q ss_pred cCcHHHHHHHHhCCccccccchhhhhhHHHHHHHcCCChhhHHHhh
Q 020786 97 DTDENVLKAIRAGCLVLEYDIEKVLEPNIAILVNHGVPKSLVVKLM 142 (321)
Q Consensus 97 ~~~~~v~~~l~~~P~lL~~s~~~~l~~~v~~L~~lG~~~~~i~~ll 142 (321)
++.+++..++..+|.++...+=.+ ... .-+|++++.+..++
T Consensus 80 ls~~~~~~lm~~~p~LikRPIv~~-~~~----~~vG~~~e~~~~~l 120 (121)
T 3rdw_A 80 LTQDQLLQAMADNPKLIERPIVVT-QGK----ARIGRPPEQVLEIL 120 (121)
T ss_dssp CCHHHHHHHHHHCGGGBCCCEEEE-TTE----EEECSSGGGGGGGC
T ss_pred CCHHHHHHHHHhCccceeCCEEEE-CCE----EEEECCHHHHHHHh
Confidence 366778888888888877654211 100 12677777766554
No 67
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=31.33 E-value=1.1e+02 Score=20.03 Aligned_cols=24 Identities=13% Similarity=0.257 Sum_probs=14.3
Q ss_pred cHHHHhhHHHHHHHhcCCChHHHh
Q 020786 221 SEQKISKLMDCYVNKLSMEPLIIS 244 (321)
Q Consensus 221 s~~~l~~k~~fL~~~~g~~~~~i~ 244 (321)
+.+.+....+.|...+|++++++.
T Consensus 51 ~~~~l~~~~~~l~~~~~v~~~~l~ 74 (84)
T 2ef8_A 51 DALELFELLEVVASRLGLPMDILL 74 (84)
T ss_dssp BHHHHHHHHHHHHHHHTCCHHHHH
T ss_pred CHHHHHHHHHHHccccCCCHHHHH
Confidence 344445555556566688877764
No 68
>1ich_A TNF-1, tumor necrosis factor receptor-1; death domain, apoptosis; NMR {Homo sapiens} SCOP: a.77.1.2
Probab=30.80 E-value=63 Score=23.92 Aligned_cols=21 Identities=29% Similarity=0.575 Sum_probs=10.1
Q ss_pred HHHhhCCCChHHHHHHHhhCC
Q 020786 18 EFFRTNGFSDSQIKSITVKRP 38 (321)
Q Consensus 18 ~~L~~lG~s~~~i~~lv~~~P 38 (321)
+|.+.+|+|+.+|..+-..+|
T Consensus 30 ~~aRkLGLse~~Id~Ie~~~~ 50 (112)
T 1ich_A 30 EFVKRLGLSDHEIDRLELQNG 50 (112)
T ss_dssp HHHHHHTCCHHHHHHHHHHCC
T ss_pred HHHHHcCCCHHHHHHHHHHCc
Confidence 444445555555554444444
No 69
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.47 E-value=42 Score=23.41 Aligned_cols=39 Identities=10% Similarity=0.265 Sum_probs=28.6
Q ss_pred HHHHHHHHcCCCHHHHHHHhhccCccccccHHHHhhHHHHHHHhcC
Q 020786 192 KKLEAYMNFGLTKDEVYSAFRRQPMFMIVSEQKISKLMDCYVNKLS 237 (321)
Q Consensus 192 ~~v~~l~~lG~~~~~v~~~i~~~P~iL~~s~~~l~~k~~fL~~~~g 237 (321)
..++-|.+|||+++++.+.+..+ + ..+...++||.+.++
T Consensus 31 ~~i~~L~~MGF~~~~a~~AL~~t----~---~nve~A~ewL~~~~~ 69 (83)
T 2dai_A 31 AALRQLTEMGFPENRATKALQLN----H---MSVPQAMEWLIEHAE 69 (83)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHT----T---SCHHHHHHHHHHGGG
T ss_pred HHHHHHHHcCCCHHHHHHHHHHh----C---CCHHHHHHHHHHCCC
Confidence 45677888999999888877643 1 247778899988653
No 70
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=29.67 E-value=44 Score=23.43 Aligned_cols=39 Identities=10% Similarity=0.343 Sum_probs=29.0
Q ss_pred HHHHHHHHHcCCCHHHHHHHhhccCccccccHHHHhhHHHHHHHhc
Q 020786 191 EKKLEAYMNFGLTKDEVYSAFRRQPMFMIVSEQKISKLMDCYVNKL 236 (321)
Q Consensus 191 ~~~v~~l~~lG~~~~~v~~~i~~~P~iL~~s~~~l~~k~~fL~~~~ 236 (321)
.+.++-|.++||+++++.+++..+ -..+...++||.+.+
T Consensus 22 ~~~I~qL~~MGF~~~~a~~AL~~~-------n~n~e~A~ewL~~h~ 60 (85)
T 2dkl_A 22 SRLIKQLTDMGFPREPAEEALKSN-------NMNLDQAMSALLEKK 60 (85)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHT-------TSCHHHHHHHHHTTS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHc-------CCCHHHHHHHHHHCc
Confidence 677888999999999888766321 123788899998753
No 71
>3ezq_A Tumor necrosis factor receptor superfamily member; apoptosis, DISC, FAS, membrane,receptor, transmembrane; 2.73A {Homo sapiens} SCOP: a.77.1.2 PDB: 1ddf_A
Probab=29.54 E-value=77 Score=23.57 Aligned_cols=24 Identities=25% Similarity=0.462 Sum_probs=14.8
Q ss_pred HHHHHhhCCCChHHHHHHHhhCCC
Q 020786 16 TVEFFRTNGFSDSQIKSITVKRPK 39 (321)
Q Consensus 16 ~l~~L~~lG~s~~~i~~lv~~~P~ 39 (321)
+-+|-+.+|+|..+|..+-..+|.
T Consensus 23 wK~laR~LGlse~~Id~I~~d~~~ 46 (115)
T 3ezq_A 23 VKGFVRKNGVNEAKIDEIKNDNVQ 46 (115)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHCSS
T ss_pred HHHHHHHcCCCHhhHHHHHHcCCC
Confidence 345555666666666666666665
No 72
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=29.52 E-value=1.1e+02 Score=19.47 Aligned_cols=17 Identities=12% Similarity=0.346 Sum_probs=9.2
Q ss_pred hhHHHHHHHHHHcCCCC
Q 020786 154 ARLNKIIDEVKKLGFDP 170 (321)
Q Consensus 154 ~~~~~~v~~l~~lG~~~ 170 (321)
+....++..|.+|||.+
T Consensus 7 e~~a~~L~~L~eMGF~D 23 (54)
T 2cp8_A 7 GQTAALMAHLFEMGFCD 23 (54)
T ss_dssp TTHHHHHHHHHHHTCCC
T ss_pred HhhHHHHHHHHHcCCCc
Confidence 34445555566666644
No 73
>2es9_A Putative cytoplasmic protein; structural genomics, PSI, protein structure initiative, NORT structural genomics consortium, NESG; 2.00A {Salmonella typhimurium} SCOP: a.247.1.1 PDB: 2jn8_A
Probab=27.49 E-value=87 Score=22.28 Aligned_cols=19 Identities=16% Similarity=0.186 Sum_probs=11.2
Q ss_pred cCCChHHHhhCCccccCCc
Q 020786 236 LSMEPLIISKHPYLLLFSL 254 (321)
Q Consensus 236 ~g~~~~~i~~~P~~L~~sl 254 (321)
|.-....+.++|.||+.-+
T Consensus 81 ~esGer~vIKnPEyFstYM 99 (115)
T 2es9_A 81 VASGNRILIKNPEYFSTYM 99 (115)
T ss_dssp HHTTCCCCCSSGGGSCHHH
T ss_pred hccCCeeeecChHHHHHHH
Confidence 4444455667777776544
No 74
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=26.95 E-value=60 Score=24.71 Aligned_cols=54 Identities=7% Similarity=0.127 Sum_probs=34.2
Q ss_pred HHHHHHhhCCCChHHHHHHHhhCCCccccCcccchhhhHHHHH-hcCCChhHHHHHHhh
Q 020786 15 ATVEFFRTNGFSDSQIKSITVKRPKFYVYNLKKCMKPKLEFFK-SLGFAELQMAKFLSS 72 (321)
Q Consensus 15 ~~l~~L~~lG~s~~~i~~lv~~~P~lL~~~~~~~l~~~v~~L~-~lG~~~~~i~~il~~ 72 (321)
-.+...+++|+|..++.-++.-. ....++.-.|..+-|. .+|++.+++.++|.+
T Consensus 20 ~LL~~y~~LgLs~~E~~lLl~L~----~~~~~g~~~ps~~~LA~~~~~s~~~v~~~L~~ 74 (135)
T 2v79_A 20 LLLTHYKQLGLNETELILLLKIK----MHLEKGSYFPTPNQLQEGMSISVEECTNRLRM 74 (135)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHH----HHHTTTCCSCCHHHHHTTSSSCHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHH----HHHhcCCCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 34778888999988876554311 1122233456667777 478888888776644
No 75
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=26.94 E-value=2.3e+02 Score=22.33 Aligned_cols=84 Identities=10% Similarity=0.031 Sum_probs=52.9
Q ss_pred hHHHHHHHcCCChhhHHHhhhhCCcceeecchhHHHHHHHHHHcCCCCCc---hhHHHHHHHHhhcCHHHHHHHHHHHHH
Q 020786 123 PNIAILVNHGVPKSLVVKLMLIQPRTLLQSTARLNKIIDEVKKLGFDPTN---LLFVLAIRSMAVMSKALWEKKLEAYMN 199 (321)
Q Consensus 123 ~~v~~L~~lG~~~~~i~~ll~~~P~il~~~~~~~~~~v~~l~~lG~~~~~---~~~~~~~~~~~~~~~~~l~~~v~~l~~ 199 (321)
..+.+|..-.-+..++..-+.+. +++++.+...+++|.+.|+=.+. ..+++.-......++..|+. -|+.
T Consensus 23 ~Al~~Ls~r~~S~~EL~~KL~~k----g~~~~~ie~vl~~L~~~g~ldD~rfA~~~vr~~~~~~~~G~~~I~~---eL~~ 95 (177)
T 3e3v_A 23 AALNYLSYQLRTRKEVEDKLRSL----DIHEDYISEIINKLIDLDLINDKNYAESYVRTMMNTSDKGPKVIKL---NLSK 95 (177)
T ss_dssp HHHHHHHSSCCCHHHHHTTSGGG----TCCHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHCCCCHHHHHH---HHHT
T ss_pred HHHHHhccccccHHHHHHHHHHc----CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcccccHHHHHH---HHHH
Confidence 34455555566667766655443 45667788889999999987654 23333322222345555544 4668
Q ss_pred cCCCHHHHHHHhhc
Q 020786 200 FGLTKDEVYSAFRR 213 (321)
Q Consensus 200 lG~~~~~v~~~i~~ 213 (321)
-|++.+.|...+..
T Consensus 96 KGI~~~~I~~al~~ 109 (177)
T 3e3v_A 96 KGIDDNIAEDALIL 109 (177)
T ss_dssp TTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHHh
Confidence 89999888877754
No 76
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=26.85 E-value=1.9e+02 Score=24.50 Aligned_cols=98 Identities=11% Similarity=-0.083 Sum_probs=50.6
Q ss_pred HHHHHHHHHcCCCHHHHHHHhhccCcc-ccccHHHHhhHHHHHHH-hcCCChHHHhh--------CCccccCCccCcchh
Q 020786 191 EKKLEAYMNFGLTKDEVYSAFRRQPMF-MIVSEQKISKLMDCYVN-KLSMEPLIISK--------HPYLLLFSLEKRILP 260 (321)
Q Consensus 191 ~~~v~~l~~lG~~~~~v~~~i~~~P~i-L~~s~~~l~~k~~fL~~-~~g~~~~~i~~--------~P~~L~~sle~ri~p 260 (321)
.+-+++|.++|++...-..+ ..-.+ ..-+.+.++..+..+.+ -||++.+++.. +|.+..-++....
T Consensus 17 ~eIv~~L~~~~i~~~~~~n~--t~~DL~~~Ptp~~v~~iy~~~l~~~~g~~~e~~~~~~~~~~~~~pel~~~si~~l~-- 92 (250)
T 2ve7_C 17 AEIVIHIRNKILTGADGKNL--TKNDLYPNPKPEVLHMIYMRALQIVYGIRLEHFYMMPVNSGVMYPHLMEGFLPFSN-- 92 (250)
T ss_dssp HHHHHHHHHHTCCHHHHHTC--CGGGTSSSCCHHHHHHHHHHHHHHHHCCCSGGGSCCCSSCCCSCGGGGTTTHHHHH--
T ss_pred HHHHHHHHHcCCCCccccCC--CHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHhccchhhcccChhhHHHHHHHHH--
Confidence 34466677776653211110 00011 12235566666655555 56877776532 3333333333111
Q ss_pred HHHH-HHHHHhCCCCCCCcccccccccChhhHHHH
Q 020786 261 RCSV-LQLLMSNKVITEDFSLTYMFKMTEKQFIER 294 (321)
Q Consensus 261 R~~~-l~~L~~~g~~~~~~~l~~~l~~s~~~F~~~ 294 (321)
=++. -++++..|+. +.++.++++.+-+|+..-
T Consensus 93 ~~r~l~~~l~~~gv~--DFtl~DL~kP~~~Rt~~i 125 (250)
T 2ve7_C 93 LVTHLDSFLPICRVN--DFETADILCPKAKRTSRF 125 (250)
T ss_dssp HHHHHHHHHHHTTCC--CCCHHHHHSCCHHHHHHH
T ss_pred HHHHHHHHHHHcCCC--CCcHhHhcCCchHHHHHH
Confidence 1121 2344556773 889999999998887654
No 77
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=26.18 E-value=39 Score=22.18 Aligned_cols=39 Identities=21% Similarity=0.314 Sum_probs=27.7
Q ss_pred HHHHHHHcCCCHHHHHHHhhccCccccccHHHHhhHHHHHHHhcC
Q 020786 193 KLEAYMNFGLTKDEVYSAFRRQPMFMIVSEQKISKLMDCYVNKLS 237 (321)
Q Consensus 193 ~v~~l~~lG~~~~~v~~~i~~~P~iL~~s~~~l~~k~~fL~~~~g 237 (321)
.++-|.+|||+++++.+.+..+- -..++.-++||.+.+.
T Consensus 12 ~v~~L~~MGF~~~~a~~AL~~t~------~~nve~A~ewLl~~~~ 50 (64)
T 1whc_A 12 ALESLIEMGFPRGRAEKALALTG------NQGIEAAMDWLMEHED 50 (64)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHT------SCCHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCHHHHHHHHHHhc------CCCHHHHHHHHHhCCC
Confidence 46677899999998888776220 1237788999988643
No 78
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=26.10 E-value=1.2e+02 Score=20.21 Aligned_cols=42 Identities=21% Similarity=0.115 Sum_probs=24.5
Q ss_pred cccchhHHHHHHHhhcCcHHH-HHHHHhCCccccccchhhhhhHHHHHHHc
Q 020786 82 ENHIIPCIEILRRVLDTDENV-LKAIRAGCLVLEYDIEKVLEPNIAILVNH 131 (321)
Q Consensus 82 ~~~l~~~v~~L~~~g~~~~~v-~~~l~~~P~lL~~s~~~~l~~~v~~L~~l 131 (321)
+......++-|.++|+.+++- .+++... ..++...++||.+.
T Consensus 16 e~~y~~ql~qL~~MGF~d~~an~~AL~at--------~Gnve~Ave~L~~~ 58 (67)
T 2dna_A 16 EVRFSKEMECLQAMGFVNYNANLQALIAT--------DGDTNAAIYKLKSS 58 (67)
T ss_dssp HHHTHHHHHHHHHHTCCCHHHHHHHHHHT--------TSCHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHc--------CCCHHHHHHHHHhC
Confidence 445566777777777765543 4554442 22466677777653
No 79
>1kw4_A Polyhomeotic; SAM domain, polycomb group, polymer, DNA binding protein; 1.75A {Drosophila melanogaster} SCOP: a.60.1.2 PDB: 1pk1_A
Probab=25.45 E-value=1.2e+02 Score=21.12 Aligned_cols=30 Identities=10% Similarity=0.091 Sum_probs=21.6
Q ss_pred cccccCChHHHHHHHhhC-CCChHHHHHHHhhC
Q 020786 6 HRVLESDAYATVEFFRTN-GFSDSQIKSITVKR 37 (321)
Q Consensus 6 P~vL~~~~~~~l~~L~~l-G~s~~~i~~lv~~~ 37 (321)
|.+..=+++.|.+||+++ |++ +....++.+
T Consensus 12 ~~v~~Ws~edV~~wL~~l~gl~--~y~~~F~~~ 42 (89)
T 1kw4_A 12 PPISSWSVDDVSNFIRELPGCQ--DYVDDFIQQ 42 (89)
T ss_dssp CCGGGCCHHHHHHHHHTSTTCG--GGHHHHHHT
T ss_pred CCchhCCHHHHHHHHHHCcChH--HHHHHHHHh
Confidence 445556788899999998 984 566666654
No 80
>1b0n_B Protein (SINI protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1
Probab=24.93 E-value=74 Score=20.46 Aligned_cols=15 Identities=7% Similarity=0.149 Sum_probs=12.0
Q ss_pred HHcCCCHHHHHHHhh
Q 020786 198 MNFGLTKDEVYSAFR 212 (321)
Q Consensus 198 ~~lG~~~~~v~~~i~ 212 (321)
+++|++.+||..++.
T Consensus 23 k~lGlsleEIrefL~ 37 (57)
T 1b0n_B 23 KEANISPEEIRKYLL 37 (57)
T ss_dssp HHTTCCHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHH
Confidence 489999999887765
No 81
>3u5c_N S27A, YS15, 40S ribosomal protein S13; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_O 3o30_G 3o2z_G 3u5g_N 3iz6_O 3jyv_O* 1ysh_E 1s1h_O
Probab=24.93 E-value=42 Score=26.21 Aligned_cols=33 Identities=15% Similarity=0.125 Sum_probs=15.6
Q ss_pred CccccccchhhhhhHHHHHHHcCCChhhHHHhhh
Q 020786 110 CLVLEYDIEKVLEPNIAILVNHGVPKSLVVKLML 143 (321)
Q Consensus 110 P~lL~~s~~~~l~~~v~~L~~lG~~~~~i~~ll~ 143 (321)
|..+.++.++ ++..|--|..-|+++++|.-++.
T Consensus 23 P~W~~~~~ee-Ve~~I~klakkG~tpSqIG~iLR 55 (151)
T 3u5c_N 23 PAWFKLSSES-VIEQIVKYARKGLTPSQIGVLLR 55 (151)
T ss_dssp CSSCCSCHHH-HHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CCCcCCCHHH-HHHHHHHHHHCCCCHHHhhhHHh
Confidence 4444444443 44444444445555555544443
No 82
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=24.80 E-value=98 Score=20.64 Aligned_cols=30 Identities=10% Similarity=-0.006 Sum_probs=19.8
Q ss_pred hHHHHHHHhhCCCChHHHHHHHhhCCCccc
Q 020786 13 AYATVEFFRTNGFSDSQIKSITVKRPKFYV 42 (321)
Q Consensus 13 ~~~~l~~L~~lG~s~~~i~~lv~~~P~lL~ 42 (321)
++...+.++..|+|..++++.+...+.-+.
T Consensus 11 ~~ri~~~l~~~glT~~~LA~~~Gvs~stls 40 (74)
T 1neq_A 11 RADVIAGLKKRKLSLSALSRQFGYAPTTLA 40 (74)
T ss_dssp HHHHHHHHHTTSCCHHHHHHHHSSCHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHCcCHHHHH
Confidence 445566777778887777777666554443
No 83
>3dfg_A Xcrecx, regulatory protein RECX; RECX RECA, homologous recombination, tandem repeats, three-helix bundle, cytoplasm; 1.50A {Xanthomonas campestris PV}
Probab=24.28 E-value=2.5e+02 Score=21.76 Aligned_cols=84 Identities=10% Similarity=0.047 Sum_probs=48.3
Q ss_pred HHHHHhhCCCChHHHHHHHhhCCCccccCcccchhhhHHHHHhcCC-ChhHHHHHHhhCCccccccccccchhHHHHHHH
Q 020786 16 TVEFFRTNGFSDSQIKSITVKRPKFYVYNLKKCMKPKLEFFKSLGF-AELQMAKFLSSQPYILERSLENHIIPCIEILRR 94 (321)
Q Consensus 16 ~l~~L~~lG~s~~~i~~lv~~~P~lL~~~~~~~l~~~v~~L~~lG~-~~~~i~~il~~~P~iL~~s~~~~l~~~v~~L~~ 94 (321)
++.+|..-.-|..++.+-+... ..+.+ .+...|+.|.+.|+ ++...+....+.-.--+.+ -.....-|+.
T Consensus 23 Al~~Ls~r~~s~~EL~~KL~~k----g~~~e-~Ie~vl~~l~~~g~ldD~rfA~~~v~~~~~~~~G----~~~I~~eL~~ 93 (162)
T 3dfg_A 23 ALGLLVHREHSKKELNRKLQAR----GIEPE-AAQAAVERLAGEGWQDDVRFAASVVRNRASSGYG----PLHIRAELGT 93 (162)
T ss_dssp HHHHHHHSCCCHHHHHHHHHHT----TCCHH-HHHHHHHHHHHTTSCCHHHHHHHHHHHHHTTTCC----HHHHHHHHHH
T ss_pred HHHHhhchhhhHHHHHHHHHhc----CCCHH-HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcccc----HHHHHHHHHH
Confidence 5788888888888888766554 23433 57888888888776 4444444432211000111 1122355777
Q ss_pred hhcCcHHHHHHHHh
Q 020786 95 VLDTDENVLKAIRA 108 (321)
Q Consensus 95 ~g~~~~~v~~~l~~ 108 (321)
-|++.+.|..++..
T Consensus 94 KGI~~~~I~~al~~ 107 (162)
T 3dfg_A 94 HGLDSDAVSAAMAT 107 (162)
T ss_dssp TTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHHh
Confidence 77776666665544
No 84
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=23.54 E-value=36 Score=23.22 Aligned_cols=40 Identities=15% Similarity=0.370 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHcCCC-HHHHHHHhhccCccccccHHHHhhHHHHHHH
Q 020786 188 ALWEKKLEAYMNFGLT-KDEVYSAFRRQPMFMIVSEQKISKLMDCYVN 234 (321)
Q Consensus 188 ~~l~~~v~~l~~lG~~-~~~v~~~i~~~P~iL~~s~~~l~~k~~fL~~ 234 (321)
+..+++++-|.+|||+ ++.+.+.+. ..-..+...++||..
T Consensus 27 ~~ye~qi~qL~eMGF~dr~~~~~AL~-------~t~Gnve~Ave~L~~ 67 (74)
T 1vej_A 27 GRYQQELEELKALGFANRDANLQALV-------ATDGDIHAAIEMLLG 67 (74)
T ss_dssp TTSHHHHHHHHHHTCCCHHHHHHHHH-------HTTSCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHH-------HhCCCHHHHHHHHHh
Confidence 3455666777777774 444344332 222335556666665
No 85
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=23.48 E-value=59 Score=24.76 Aligned_cols=50 Identities=4% Similarity=-0.019 Sum_probs=29.0
Q ss_pred HHHHHHhhcCcHHHHHHHHhCCccccccchhhhhhHHHHHHH-cCCChhhHHHhh
Q 020786 89 IEILRRVLDTDENVLKAIRAGCLVLEYDIEKVLEPNIAILVN-HGVPKSLVVKLM 142 (321)
Q Consensus 89 v~~L~~~g~~~~~v~~~l~~~P~lL~~s~~~~l~~~v~~L~~-lG~~~~~i~~ll 142 (321)
+.+++++|++..++.-++.- ..++-+++--|..+-+.+ +|++..+|.+++
T Consensus 22 L~~y~~LgLs~~E~~lLl~L----~~~~~~g~~~ps~~~LA~~~~~s~~~v~~~L 72 (135)
T 2v79_A 22 LTHYKQLGLNETELILLLKI----KMHLEKGSYFPTPNQLQEGMSISVEECTNRL 72 (135)
T ss_dssp HHHHHHHTCCHHHHHHHHHH----HHHHTTTCCSCCHHHHHTTSSSCHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHH----HHHHhcCCCCCCHHHHHHHHCcCHHHHHHHH
Confidence 57788888888876544432 222222233355566654 777777766554
No 86
>2o71_A Death domain-containing protein cradd; raidd, apoptosis; 2.00A {Homo sapiens}
Probab=22.98 E-value=1.6e+02 Score=21.58 Aligned_cols=53 Identities=9% Similarity=0.120 Sum_probs=0.0
Q ss_pred HHHhhCCCChHHHHHHHhhCCCcccc-------------CcccchhhhHHHHHhcCCChhHHHHHH
Q 020786 18 EFFRTNGFSDSQIKSITVKRPKFYVY-------------NLKKCMKPKLEFFKSLGFAELQMAKFL 70 (321)
Q Consensus 18 ~~L~~lG~s~~~i~~lv~~~P~lL~~-------------~~~~~l~~~v~~L~~lG~~~~~i~~il 70 (321)
.+-+.+|++..+|..+-..+|.=+.. ....++..-++.|.++|++.+-+..++
T Consensus 40 ~LAR~LGlse~dId~I~~~~p~dl~eq~~qmL~~W~~r~G~~AT~~~L~~AL~~~~l~~~v~~~~~ 105 (115)
T 2o71_A 40 PMVLSLGLSQTDIYRCKANHPHNVQSQVVEAFIRWRQRFGKQATFQSLHNGLRAVEVDPSLLLHML 105 (115)
T ss_dssp HHHHHTTCCHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHTTCCTHHHHHHT
T ss_pred HHHHHcCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCcCcHHHHHHHHHHHcCCCHHHHHHHH
No 87
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=22.68 E-value=65 Score=26.31 Aligned_cols=27 Identities=22% Similarity=0.434 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHhhcc
Q 020786 188 ALWEKKLEAYMNFGLTKDEVYSAFRRQ 214 (321)
Q Consensus 188 ~~l~~~v~~l~~lG~~~~~v~~~i~~~ 214 (321)
....++|+-|.++||+++++..++.++
T Consensus 161 ~~~eekV~~l~~MGf~~~~a~~AL~~~ 187 (201)
T 3k9o_A 161 PEYTKKIENLCAMGFDRNAVIVALSSK 187 (201)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHT
T ss_pred chhHHHHHHHHHcCCCHHHHHHHHHHc
Confidence 356888999999999999998877655
No 88
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=22.68 E-value=63 Score=22.67 Aligned_cols=21 Identities=10% Similarity=0.226 Sum_probs=17.3
Q ss_pred HHHHHHHHcCCCHHHHHHHhh
Q 020786 192 KKLEAYMNFGLTKDEVYSAFR 212 (321)
Q Consensus 192 ~~v~~l~~lG~~~~~v~~~i~ 212 (321)
..+.+++++|||-++|..++.
T Consensus 7 ~~I~~lr~lGfsL~eIk~~l~ 27 (99)
T 1q08_A 7 KFIRHARQLGFSLESIRELLS 27 (99)
T ss_dssp HHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHH
Confidence 456678899999999999885
No 89
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=22.68 E-value=1.8e+02 Score=19.61 Aligned_cols=16 Identities=25% Similarity=0.104 Sum_probs=8.1
Q ss_pred CHHHHHHHHHHHHHcC
Q 020786 186 SKALWEKKLEAYMNFG 201 (321)
Q Consensus 186 ~~~~l~~~v~~l~~lG 201 (321)
|+.+++.-++.|.+-|
T Consensus 37 S~~TVrr~L~~Le~kG 52 (77)
T 2jt1_A 37 SIYQVRLYLEQLHDVG 52 (77)
T ss_dssp CHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHCC
Confidence 4445555555555444
No 90
>1dul_A Signal recognition particle protein (fifty-four homolog); protein-RNA complex, double helix, tetraloop, internal loop, SRP, ribonucleoprotein; HET: CCC; 1.80A {Escherichia coli} SCOP: a.36.1.1 PDB: 2xkv_C
Probab=21.75 E-value=71 Score=21.41 Aligned_cols=32 Identities=13% Similarity=0.169 Sum_probs=18.2
Q ss_pred hCCCccccCcccchhhhHHHHHhcCCChhHHHHHHhhC
Q 020786 36 KRPKFYVYNLKKCMKPKLEFFKSLGFAELQMAKFLSSQ 73 (321)
Q Consensus 36 ~~P~lL~~~~~~~l~~~v~~L~~lG~~~~~i~~il~~~ 73 (321)
.+|.++.. ..+-..-++-|.+..++.++|..|
T Consensus 28 ~nP~ii~~------SR~~RIA~GSG~~v~eVn~Llkqf 59 (69)
T 1dul_A 28 AKPEIIKG------SRKRRIAAGSGMQVQDVNRLLKQF 59 (69)
T ss_dssp HCGGGCCH------HHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred hCccccCH------HHHHHHHccCCCCHHHHHHHHHHH
Confidence 35666631 234445556677777776666554
No 91
>2of5_A Death domain-containing protein cradd; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=21.67 E-value=1.4e+02 Score=21.90 Aligned_cols=52 Identities=13% Similarity=0.180 Sum_probs=0.0
Q ss_pred HHHhhCCCChHHHHHHHhhCCCccccCcccchhhhHHHHH-hcC--CChhHHHHHHhhC
Q 020786 18 EFFRTNGFSDSQIKSITVKRPKFYVYNLKKCMKPKLEFFK-SLG--FAELQMAKFLSSQ 73 (321)
Q Consensus 18 ~~L~~lG~s~~~i~~lv~~~P~lL~~~~~~~l~~~v~~L~-~lG--~~~~~i~~il~~~ 73 (321)
.+-+.+|++..+|..+-..+| .++.......+..|. .-| .+...+.+.+.+.
T Consensus 40 ~LAR~LGlse~dId~I~~~~p----~~l~eq~~qmL~~W~~r~G~~AT~~~L~~AL~~~ 94 (114)
T 2of5_A 40 PMVLSLGLSQTDIYRCKANHP----HNVQSQVVEAFIRWRQRFGKQATFQSLHNGLRAV 94 (114)
T ss_dssp HHHHTTTCCHHHHHHHHHHCS----SCHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHT
T ss_pred HHHHHcCCCHHHHHHHHHHCC----CCHHHHHHHHHHHHHHHHCcCcHHHHHHHHHHHc
No 92
>3j20_Q 30S ribosomal protein S15P/S13E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=20.27 E-value=89 Score=24.60 Aligned_cols=37 Identities=22% Similarity=0.343 Sum_probs=24.8
Q ss_pred hCCccccccchhhhhhHHHHHHHcCCChhhHHHhhhhC
Q 020786 108 AGCLVLEYDIEKVLEPNIAILVNHGVPKSLVVKLMLIQ 145 (321)
Q Consensus 108 ~~P~lL~~s~~~~l~~~v~~L~~lG~~~~~i~~ll~~~ 145 (321)
..|..+.++.++ ++..|--|..-|+++++|.-++.-.
T Consensus 21 ~~P~W~~~~~ee-v~~~i~klakkG~~pSqIG~~LRD~ 57 (158)
T 3j20_Q 21 APPIWVEYTVEE-IENLVVKLRKEGYSTAMIGTILRDQ 57 (158)
T ss_dssp SCCSSSCCCHHH-HHHHHHHHHHHTCCHHHHHHHHHHT
T ss_pred CCCCCcCCCHHH-HHHHHHHHHHCCCCHHHhhHHHhcc
Confidence 346677777664 6666666767777777777666554
Done!