BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020787
(321 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255543431|ref|XP_002512778.1| Ribulose bisphosphate carboxylase/oxygenase activase, chloroplast
precursor, putative [Ricinus communis]
gi|223547789|gb|EEF49281.1| Ribulose bisphosphate carboxylase/oxygenase activase, chloroplast
precursor, putative [Ricinus communis]
Length = 428
Score = 609 bits (1570), Expect = e-172, Method: Compositional matrix adjust.
Identities = 296/341 (86%), Positives = 310/341 (90%), Gaps = 20/341 (5%)
Query: 1 MNIAVGARAGVIDPLFAGNFLGKDSDIVFDYRQKVTRSFEYLQGDYYIAPVFMASLC--- 57
MNIAVGAR GVIDPLFAGNFLG+DSDIVFDYRQKVTRSFEYL+GDYYIAPVF+ +C
Sbjct: 88 MNIAVGARPGVIDPLFAGNFLGRDSDIVFDYRQKVTRSFEYLKGDYYIAPVFLVMICHIV 147
Query: 58 -----------------IWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKL 100
IWGGKGQGKSFQTEL+FQAMGIEPVIMSAGELESERAGEPGKL
Sbjct: 148 KNYIAHLLNVKVPLILGIWGGKGQGKSFQTELVFQAMGIEPVIMSAGELESERAGEPGKL 207
Query: 101 IRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVS 160
IRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNL DNPTRVS
Sbjct: 208 IRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLVDNPTRVS 267
Query: 161 IGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDG 220
GQDWRESDITNRIPII TGNDFSTIYAPLIRDGRMEKF+WQPN EDI+NIVHRMYEKDG
Sbjct: 268 TGQDWRESDITNRIPIIVTGNDFSTIYAPLIRDGRMEKFFWQPNQEDIVNIVHRMYEKDG 327
Query: 221 ITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELP 280
I++DEV SIVKTFPNQALDFYGALRSRTYD SISKWIDDIGGVENLGNKLLKRRK++ LP
Sbjct: 328 ISRDEVVSIVKTFPNQALDFYGALRSRTYDMSISKWIDDIGGVENLGNKLLKRRKNETLP 387
Query: 281 VFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYMKNIDD 321
V+TPPE+TVEAL ESGYSL+REQQLIMETKLSKEYMKNIDD
Sbjct: 388 VYTPPEQTVEALFESGYSLIREQQLIMETKLSKEYMKNIDD 428
>gi|356550687|ref|XP_003543716.1| PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic-like [Glycine max]
Length = 428
Score = 596 bits (1536), Expect = e-168, Method: Compositional matrix adjust.
Identities = 291/342 (85%), Positives = 306/342 (89%), Gaps = 21/342 (6%)
Query: 1 MNIAVGARAGVIDPLFAGNFLGKDSDIVFDYRQKVTRSFEYLQGDYYIAPVFMAS----- 55
MNIAVG RAGVID LFAGNFLGKDSDIVFDYRQKVTRSF+YLQGDYYIAP+FM
Sbjct: 87 MNIAVGQRAGVIDSLFAGNFLGKDSDIVFDYRQKVTRSFQYLQGDYYIAPLFMDKVVCHI 146
Query: 56 ----------------LCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGK 99
L IWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGK
Sbjct: 147 VKNYLARVLNTKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGK 206
Query: 100 LIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRV 159
LIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRV
Sbjct: 207 LIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRV 266
Query: 160 SIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKD 219
S+GQDWRESD+TNRIPII TGNDFST+YAPLIRDGRM+KFYWQPN EDILNIVHRMYEKD
Sbjct: 267 SVGQDWRESDVTNRIPIIVTGNDFSTLYAPLIRDGRMDKFYWQPNQEDILNIVHRMYEKD 326
Query: 220 GITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKEL 279
I++DEV +V TFPNQALDFYGALRSRTYDRSI KWIDDIGGVEN GNKLLKRRKD+ L
Sbjct: 327 SISRDEVERVVNTFPNQALDFYGALRSRTYDRSILKWIDDIGGVENFGNKLLKRRKDQSL 386
Query: 280 PVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYMKNIDD 321
PVF PPE+TV+ALLESGYSL++EQ+LIMETKLSKEYMKNIDD
Sbjct: 387 PVFIPPEQTVDALLESGYSLIKEQRLIMETKLSKEYMKNIDD 428
>gi|224057192|ref|XP_002299165.1| predicted protein [Populus trichocarpa]
gi|222846423|gb|EEE83970.1| predicted protein [Populus trichocarpa]
Length = 428
Score = 595 bits (1534), Expect = e-168, Method: Compositional matrix adjust.
Identities = 286/342 (83%), Positives = 309/342 (90%), Gaps = 21/342 (6%)
Query: 1 MNIAVGARAGVIDPLFAGNFLGKDSDIVFDYRQKVTRSFEYLQGDYYIAPVFMAS----- 55
MNIAVGARAGV+D LFAGNFLGKDSDIVFDYRQKVTRSFEYLQGDYYIAP+F+
Sbjct: 87 MNIAVGARAGVVDSLFAGNFLGKDSDIVFDYRQKVTRSFEYLQGDYYIAPLFLDKVVCHI 146
Query: 56 ----------------LCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGK 99
L IWGGKGQGKSFQTELIFQ +G+EPVIMSAGELESERAGEPG+
Sbjct: 147 VKNYLAHRLNVKVPLILGIWGGKGQGKSFQTELIFQTLGVEPVIMSAGELESERAGEPGR 206
Query: 100 LIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRV 159
LIRERYRTASQVVQNQGKMSCLMIND+DAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRV
Sbjct: 207 LIRERYRTASQVVQNQGKMSCLMINDLDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRV 266
Query: 160 SIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKD 219
SIGQDWRESDITNR+PII TGNDFSTIYAPLIRDGRMEKFYWQPN EDI+NIVHRMYEKD
Sbjct: 267 SIGQDWRESDITNRVPIIVTGNDFSTIYAPLIRDGRMEKFYWQPNREDIVNIVHRMYEKD 326
Query: 220 GITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKEL 279
GI++DEV SIV FPNQALDFYGALRSRTYDRSISKW+DDIGG+ENLG +LL+R+KD++L
Sbjct: 327 GISRDEVVSIVNKFPNQALDFYGALRSRTYDRSISKWVDDIGGIENLGKQLLRRKKDEKL 386
Query: 280 PVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYMKNIDD 321
P FTPPE+T+EALLESG+SL+REQQLIMETKLSKEYMKN+DD
Sbjct: 387 PEFTPPEQTMEALLESGHSLIREQQLIMETKLSKEYMKNVDD 428
>gi|298204740|emb|CBI25238.3| unnamed protein product [Vitis vinifera]
Length = 440
Score = 591 bits (1523), Expect = e-166, Method: Compositional matrix adjust.
Identities = 287/340 (84%), Positives = 307/340 (90%), Gaps = 19/340 (5%)
Query: 1 MNIAVGARAGVIDPLFAGNFLGKDSDIVFDYRQKVTRSFEYLQGDYYIAPVFMAS----- 55
MNIAVGARAG+ID LF GNFLG+DSDIVFDYRQKVTRSFEYLQGDYYIAPVFMA
Sbjct: 101 MNIAVGARAGIIDDLFVGNFLGRDSDIVFDYRQKVTRSFEYLQGDYYIAPVFMAMCHIVK 160
Query: 56 --------------LCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLI 101
L IWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLI
Sbjct: 161 NYIAHLLNTNVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLI 220
Query: 102 RERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSI 161
RERYRTASQVVQNQGKMSCLMINDIDAG+GRFGNTQ+TVNNQI VGTLMNLSDNPTRVSI
Sbjct: 221 RERYRTASQVVQNQGKMSCLMINDIDAGIGRFGNTQVTVNNQIAVGTLMNLSDNPTRVSI 280
Query: 162 GQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGI 221
GQDWRE+DITNR+PII TGNDFSTIYAPLIRDGRM+KFYWQP EDI+NIV RMYEKDGI
Sbjct: 281 GQDWRETDITNRVPIIVTGNDFSTIYAPLIRDGRMDKFYWQPTHEDIINIVDRMYEKDGI 340
Query: 222 TKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPV 281
++D V IV TFPNQALDFYGALRSRTYDRSISKW+DDIGGVENLGNKLL+RRKD++LPV
Sbjct: 341 SRDAVVRIVDTFPNQALDFYGALRSRTYDRSISKWVDDIGGVENLGNKLLRRRKDEKLPV 400
Query: 282 FTPPEKTVEALLESGYSLLREQQLIMETKLSKEYMKNIDD 321
F PP++T++ALLESGYSL++EQQLIMETKLSKEYMKNIDD
Sbjct: 401 FVPPKQTIDALLESGYSLIKEQQLIMETKLSKEYMKNIDD 440
>gi|225443213|ref|XP_002270825.1| PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic-like [Vitis vinifera]
Length = 442
Score = 588 bits (1515), Expect = e-165, Method: Compositional matrix adjust.
Identities = 286/342 (83%), Positives = 306/342 (89%), Gaps = 21/342 (6%)
Query: 1 MNIAVGARAGVIDPLFAGNFLGKDSDIVFDYRQKVTRSFEYLQGDYYIAPVFMAS----- 55
MNIAVGARAG+ID LF GNFLG+DSDIVFDYRQKVTRSFEYLQGDYYIAPVFM
Sbjct: 101 MNIAVGARAGIIDDLFVGNFLGRDSDIVFDYRQKVTRSFEYLQGDYYIAPVFMDKVVCHI 160
Query: 56 ----------------LCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGK 99
L IWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGK
Sbjct: 161 VKNYIAHLLNTNVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGK 220
Query: 100 LIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRV 159
LIRERYRTASQVVQNQGKMSCLMINDIDAG+GRFGNTQ+TVNNQI VGTLMNLSDNPTRV
Sbjct: 221 LIRERYRTASQVVQNQGKMSCLMINDIDAGIGRFGNTQVTVNNQIAVGTLMNLSDNPTRV 280
Query: 160 SIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKD 219
SIGQDWRE+DITNR+PII TGNDFSTIYAPLIRDGRM+KFYWQP EDI+NIV RMYEKD
Sbjct: 281 SIGQDWRETDITNRVPIIVTGNDFSTIYAPLIRDGRMDKFYWQPTHEDIINIVDRMYEKD 340
Query: 220 GITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKEL 279
GI++D V IV TFPNQALDFYGALRSRTYDRSISKW+DDIGGVENLGNKLL+RRKD++L
Sbjct: 341 GISRDAVVRIVDTFPNQALDFYGALRSRTYDRSISKWVDDIGGVENLGNKLLRRRKDEKL 400
Query: 280 PVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYMKNIDD 321
PVF PP++T++ALLESGYSL++EQQLIMETKLSKEYMKNIDD
Sbjct: 401 PVFVPPKQTIDALLESGYSLIKEQQLIMETKLSKEYMKNIDD 442
>gi|388517903|gb|AFK47013.1| unknown [Lotus japonicus]
Length = 421
Score = 579 bits (1492), Expect = e-163, Method: Compositional matrix adjust.
Identities = 280/342 (81%), Positives = 302/342 (88%), Gaps = 21/342 (6%)
Query: 1 MNIAVGARAGVIDPLFAGNFLGKDSDIVFDYRQKVTRSFEYLQGDYYIAPVFMAS----- 55
MNIAVG RAGVID LFAGNFLGKDSDIVFDYRQK TRSF+YLQG YYIAP+FM
Sbjct: 80 MNIAVGQRAGVIDDLFAGNFLGKDSDIVFDYRQKATRSFQYLQGYYYIAPLFMDKVVCHI 139
Query: 56 ----------------LCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGK 99
L IWGGKGQGK+FQTELIF AMG+EPVIMSAGELESERAGEPG+
Sbjct: 140 AKNYLAHLLNVKVPLILGIWGGKGQGKTFQTELIFHAMGMEPVIMSAGELESERAGEPGR 199
Query: 100 LIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRV 159
LIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRV
Sbjct: 200 LIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRV 259
Query: 160 SIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKD 219
S+GQDWRESDITNRIPII TGNDFSTIYAPLIRDGRM+KFYWQPN EDI NIVHRMYEKD
Sbjct: 260 SVGQDWRESDITNRIPIIVTGNDFSTIYAPLIRDGRMDKFYWQPNREDIQNIVHRMYEKD 319
Query: 220 GITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKEL 279
GI++DEV IV TFPNQALDFYGALRSRTYD+SI KW+DDIGGVEN G K+LKRRKD+ L
Sbjct: 320 GISRDEVERIVDTFPNQALDFYGALRSRTYDKSILKWVDDIGGVENFGTKILKRRKDQNL 379
Query: 280 PVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYMKNIDD 321
PVF PPE+TV+ALLESGYSL++EQ+L+ME+KLSKEYMKN++D
Sbjct: 380 PVFIPPEQTVDALLESGYSLIKEQELVMESKLSKEYMKNMED 421
>gi|449436220|ref|XP_004135891.1| PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic-like [Cucumis sativus]
Length = 426
Score = 573 bits (1478), Expect = e-161, Method: Compositional matrix adjust.
Identities = 275/342 (80%), Positives = 302/342 (88%), Gaps = 21/342 (6%)
Query: 1 MNIAVGARAGVIDPLFAGNFLGKDSDIVFDYRQKVTRSFEYLQGDYYIAPVFMAS----- 55
MNIAVGARAGVID +FAGNFLGKDSDIVFDYRQKVTR+FE++QGDYYIAP FM
Sbjct: 85 MNIAVGARAGVIDDVFAGNFLGKDSDIVFDYRQKVTRTFEHIQGDYYIAPTFMDKVVCHL 144
Query: 56 ----------------LCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGK 99
L +WGGKGQGKSFQTELIFQAMG+EPVIMSAGELESERAGEPGK
Sbjct: 145 VKNFIVHLLDVKVPLILGVWGGKGQGKSFQTELIFQAMGVEPVIMSAGELESERAGEPGK 204
Query: 100 LIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRV 159
LIRERYRTASQVVQNQGKMSCLMINDIDAG+GRFG TQ+TVNNQIV GTLMNL+DNPTRV
Sbjct: 205 LIRERYRTASQVVQNQGKMSCLMINDIDAGIGRFGQTQVTVNNQIVSGTLMNLADNPTRV 264
Query: 160 SIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKD 219
SIGQDWRE+DI +RIPII TGNDFSTIYAPLIRDGRMEKFYWQPN EDI+NIVHRMYEKD
Sbjct: 265 SIGQDWREADILHRIPIILTGNDFSTIYAPLIRDGRMEKFYWQPNREDIVNIVHRMYEKD 324
Query: 220 GITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKEL 279
GI++ +V IV TFPNQALDFYGALRSRTYD +ISKW+DDIGGVE LG KLL+RRK ++L
Sbjct: 325 GISRAQVVDIVNTFPNQALDFYGALRSRTYDSAISKWVDDIGGVEKLGEKLLRRRKSEKL 384
Query: 280 PVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYMKNIDD 321
P FTPPE+T+EALL++GYSL++EQQLIMETKLSKEYMKN+DD
Sbjct: 385 PTFTPPEQTLEALLKAGYSLVKEQQLIMETKLSKEYMKNMDD 426
>gi|388512327|gb|AFK44225.1| unknown [Medicago truncatula]
Length = 418
Score = 573 bits (1477), Expect = e-161, Method: Compositional matrix adjust.
Identities = 276/342 (80%), Positives = 301/342 (88%), Gaps = 21/342 (6%)
Query: 1 MNIAVGARAGVIDPLFAGNFLGKDSDIVFDYRQKVTRSFEYLQGDYYIAPVFMAS----- 55
MNIAVG RAG+ID +FAGNFLG+DSDIVFDYRQKVTRSF+YLQGDYYIAP+FM
Sbjct: 77 MNIAVGQRAGIIDDVFAGNFLGRDSDIVFDYRQKVTRSFQYLQGDYYIAPLFMDKVVTHI 136
Query: 56 ----------------LCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGK 99
L IWGGKGQGK+FQTELIF+AMG+EPVIMSAGELESE AGEPG+
Sbjct: 137 TKNYLSHLLNAKVPLILGIWGGKGQGKTFQTELIFRAMGVEPVIMSAGELESENAGEPGR 196
Query: 100 LIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRV 159
LIRERYRTAS+VVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNL DNPTRV
Sbjct: 197 LIRERYRTASKVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLCDNPTRV 256
Query: 160 SIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKD 219
SIGQDWRE+D+TNRIPII TGND STIYAPLIRDGRM+KFYWQPN EDILNIV RMYEKD
Sbjct: 257 SIGQDWREADVTNRIPIIVTGNDLSTIYAPLIRDGRMDKFYWQPNQEDILNIVQRMYEKD 316
Query: 220 GITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKEL 279
GI++DEV +VKTFPNQALDFYGALRSRTYDRSI KW+DDIGG E+ +K LKRRKD+ L
Sbjct: 317 GISRDEVEKVVKTFPNQALDFYGALRSRTYDRSILKWVDDIGGAESFTSKFLKRRKDQNL 376
Query: 280 PVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYMKNIDD 321
PVF PPE+T++ALLESGYSLL+EQQLIMETKLSKEYMKNI+D
Sbjct: 377 PVFIPPEQTIDALLESGYSLLKEQQLIMETKLSKEYMKNIED 418
>gi|449491096|ref|XP_004158798.1| PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic-like [Cucumis sativus]
Length = 427
Score = 562 bits (1448), Expect = e-158, Method: Compositional matrix adjust.
Identities = 272/343 (79%), Positives = 299/343 (87%), Gaps = 22/343 (6%)
Query: 1 MNIAVGARAGVIDPLFAGNFLGKDSDIVFDYRQKVTRSFEYLQGDYYIAPVFMAS----- 55
MNIAVGARAGVID +FAGNFLGKDSDIVFDYRQKVTR+FE++QGDYYIAP FM
Sbjct: 85 MNIAVGARAGVIDDVFAGNFLGKDSDIVFDYRQKVTRTFEHIQGDYYIAPTFMDKVVCHL 144
Query: 56 ----------------LCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGK 99
L +WGGKGQGKSFQTELIFQAMG+EPVIMSAGELESERAGEPGK
Sbjct: 145 VKNFIVHLLDVKVPLILGVWGGKGQGKSFQTELIFQAMGVEPVIMSAGELESERAGEPGK 204
Query: 100 LIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRV 159
LIRERYRTASQVVQNQGKMSCLMINDIDAG+GRFG TQ+TVNNQIV GTLMNL+DNPTRV
Sbjct: 205 LIRERYRTASQVVQNQGKMSCLMINDIDAGIGRFGQTQVTVNNQIVSGTLMNLADNPTRV 264
Query: 160 SIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKD 219
SIGQDWRE+DI +RIPII TGNDFSTIYAPLIRDGRMEKFYWQPN EDI+NIVHRMYEKD
Sbjct: 265 SIGQDWREADILHRIPIILTGNDFSTIYAPLIRDGRMEKFYWQPNREDIVNIVHRMYEKD 324
Query: 220 GITKDEVGSIVKTFPNQA-LDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKE 278
GI++ +V IV TFPNQ FYGALRSRTYD +ISKW+DDIGGVE LG KLL+RRK ++
Sbjct: 325 GISRAQVVDIVNTFPNQGNFGFYGALRSRTYDSAISKWVDDIGGVEKLGEKLLRRRKSEK 384
Query: 279 LPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYMKNIDD 321
LP FTPPE+T+EALL++GYSL++EQQLIMETKLSKEYMKN+DD
Sbjct: 385 LPTFTPPEQTLEALLKAGYSLVKEQQLIMETKLSKEYMKNMDD 427
>gi|358346465|ref|XP_003637288.1| Ribulose bisphosphate carboxylase/oxygenase activase [Medicago
truncatula]
gi|355503223|gb|AES84426.1| Ribulose bisphosphate carboxylase/oxygenase activase [Medicago
truncatula]
Length = 459
Score = 555 bits (1430), Expect = e-156, Method: Compositional matrix adjust.
Identities = 276/383 (72%), Positives = 301/383 (78%), Gaps = 62/383 (16%)
Query: 1 MNIAVGARAGVIDPLFAGNFLGKDSDIVFDYRQKVTRSFEYLQGDYYIAPVFMAS----- 55
MNIAVG RAG+ID +FAGNFLG+DSDIVFDYRQKVTRSF+YLQGDYYIAP+FM
Sbjct: 77 MNIAVGQRAGIIDDVFAGNFLGRDSDIVFDYRQKVTRSFQYLQGDYYIAPLFMDKVVTHI 136
Query: 56 ----------------LCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGK 99
L IWGGKGQGK+FQTELIF+AMG+EPVIMSAGELESE AGEPG+
Sbjct: 137 TKNYLSHLLNAKVPLILGIWGGKGQGKTFQTELIFRAMGVEPVIMSAGELESENAGEPGR 196
Query: 100 LIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRV 159
LIRERYRTAS+VVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNL DNPTRV
Sbjct: 197 LIRERYRTASKVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLCDNPTRV 256
Query: 160 SIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKD 219
SIGQDWRE+D+TNRIPII TGND STIYAPLIRDGRM+KFYWQPN EDILNIV RMYEKD
Sbjct: 257 SIGQDWREADVTNRIPIIVTGNDLSTIYAPLIRDGRMDKFYWQPNQEDILNIVQRMYEKD 316
Query: 220 GITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISK------------------------ 255
GI++DEV +VKTFPNQALDFYGALRSRTYDRSI K
Sbjct: 317 GISRDEVEKVVKTFPNQALDFYGALRSRTYDRSILKGVELEEKPLSKESPVSYLLCTSNA 376
Query: 256 -----------------WIDDIGGVENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYS 298
W+DDIGG E+ +K LKRRKD+ LPVF PPE+T++ALLESGYS
Sbjct: 377 VGITHTDRLIPQHLPTPWVDDIGGAESFASKFLKRRKDQNLPVFIPPEQTIDALLESGYS 436
Query: 299 LLREQQLIMETKLSKEYMKNIDD 321
LL+EQQLIMETKLSKEYMKNI+D
Sbjct: 437 LLKEQQLIMETKLSKEYMKNIED 459
>gi|71834884|gb|AAZ41846.1| Rubisco activase 2 [Mesembryanthemum crystallinum]
Length = 456
Score = 546 bits (1406), Expect = e-153, Method: Compositional matrix adjust.
Identities = 262/341 (76%), Positives = 293/341 (85%), Gaps = 21/341 (6%)
Query: 2 NIAVGARAGVIDPLFAGNFLGKDSDIVFDYRQKVTRSFEYLQGDYYIAPVF--------- 52
NI VGAR GVID LF GNFLG+DSDIVFDYRQKVTRSFEYL+GDYYIAPVF
Sbjct: 116 NITVGARPGVIDDLFTGNFLGRDSDIVFDYRQKVTRSFEYLRGDYYIAPVFLDQVVCHIV 175
Query: 53 ---MASLC---------IWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKL 100
MA L IWGGKGQGK+FQTELIF+AMG+EPVIMSAGE+ESE+AGEPG+L
Sbjct: 176 KNFMAHLLNVKVPLILGIWGGKGQGKTFQTELIFRAMGVEPVIMSAGEMESEKAGEPGRL 235
Query: 101 IRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVS 160
IRERYR ASQVVQN GK+SCLMIND+DAG+GRFGNTQ+TVNNQ GTLMNL+DNPTRVS
Sbjct: 236 IRERYRAASQVVQNHGKLSCLMINDLDAGIGRFGNTQVTVNNQTAAGTLMNLADNPTRVS 295
Query: 161 IGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDG 220
IGQ WRE+D T+RIP+I TGNDFSTIYAPLIRDGRM+KFYWQP +DI+NIVHRMYEKDG
Sbjct: 296 IGQKWRENDTTHRIPVIVTGNDFSTIYAPLIRDGRMDKFYWQPTHDDIVNIVHRMYEKDG 355
Query: 221 ITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELP 280
I+ DEV SIV TFPNQALDFYGA+RSRTYDRS+ KW+DDIGG++NLG KLL+ RK ELP
Sbjct: 356 ISWDEVVSIVNTFPNQALDFYGAMRSRTYDRSVLKWVDDIGGIDNLGAKLLQLRKGDELP 415
Query: 281 VFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYMKNIDD 321
VF PPE+ VEALLESGYSLLREQQLI +TKL+KEYMKN++D
Sbjct: 416 VFVPPEQNVEALLESGYSLLREQQLINKTKLAKEYMKNMED 456
>gi|116310848|emb|CAH67790.1| OSIGBa0132E09-OSIGBa0108L24.4 [Oryza sativa Indica Group]
Length = 441
Score = 538 bits (1385), Expect = e-150, Method: Compositional matrix adjust.
Identities = 253/342 (73%), Positives = 295/342 (86%), Gaps = 21/342 (6%)
Query: 1 MNIAVGARAGVIDPLFAGNFLGKDSDIVFDYRQKVTRSFEYLQGDYYIAPVFMAS----- 55
MNIAVGAR+G++D LF GNFLGKDSDIVFDYRQK TR+FEYLQGDYYIAP+F+
Sbjct: 100 MNIAVGARSGIVDDLFVGNFLGKDSDIVFDYRQKATRTFEYLQGDYYIAPLFLDKVACHI 159
Query: 56 ----------------LCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGK 99
L IWGGKGQGK+FQTELIF+AMG+EPVIMSAGELESE+AGEPG+
Sbjct: 160 VKNYLAHILTIKIPLILGIWGGKGQGKTFQTELIFRAMGVEPVIMSAGELESEKAGEPGR 219
Query: 100 LIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRV 159
LIR+RYRTASQV+QNQGKMS LMIND+DAG+GRFGNTQMTVNNQIV+GTLMNL+DNPTRV
Sbjct: 220 LIRDRYRTASQVIQNQGKMSVLMINDLDAGVGRFGNTQMTVNNQIVIGTLMNLADNPTRV 279
Query: 160 SIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKD 219
SIGQ WRESD+T+R+PII TGNDFST+YAPLIRDGRMEKFYWQP+ EDI+NIVHRMY KD
Sbjct: 280 SIGQKWRESDVTHRVPIIVTGNDFSTLYAPLIRDGRMEKFYWQPDREDIINIVHRMYIKD 339
Query: 220 GITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKEL 279
G++ ++V IV TFPNQALDFYGALRSRTYDR+I +W+++IGG E L KLLKR+K +EL
Sbjct: 340 GLSFEDVSKIVDTFPNQALDFYGALRSRTYDRAILQWVEEIGGHEQLNEKLLKRKKGEEL 399
Query: 280 PVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYMKNIDD 321
P F PP+ TV+AL+ESG SL++EQ+LIM +KLSKEYMKN+DD
Sbjct: 400 PTFIPPKTTVDALIESGDSLVKEQELIMNSKLSKEYMKNLDD 441
>gi|19387266|gb|AAL87177.1|AF480497_5 putative rubisco activase [Oryza sativa Japonica Group]
Length = 435
Score = 536 bits (1382), Expect = e-150, Method: Compositional matrix adjust.
Identities = 251/336 (74%), Positives = 294/336 (87%), Gaps = 15/336 (4%)
Query: 1 MNIAVGARAGVIDPLFAGNFLGKDSDIVFDYRQKVTRSFEYLQGDYYIAPVFMASLCIWG 60
MNIAVGAR+G++D LF GNFLGKDSDIVFDYRQK TR+FEYLQGDYYIAP+F+ + IWG
Sbjct: 100 MNIAVGARSGIVDDLFVGNFLGKDSDIVFDYRQKATRTFEYLQGDYYIAPLFLDKVGIWG 159
Query: 61 GKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSC 120
GKGQGK+FQTELIF+AMG+EPVIMSAGELESE+AGEPG+LIR+RYRTASQV+QNQGKMS
Sbjct: 160 GKGQGKTFQTELIFRAMGVEPVIMSAGELESEKAGEPGRLIRDRYRTASQVIQNQGKMSV 219
Query: 121 LMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTG 180
LMIND+DAG+GRFGNTQMTVNNQIV+GTLMNL+DNPTRVSIGQ WRESD+T+R+PII TG
Sbjct: 220 LMINDLDAGVGRFGNTQMTVNNQIVIGTLMNLADNPTRVSIGQKWRESDVTHRVPIIVTG 279
Query: 181 NDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDF 240
NDFST+YAPLIRDGRMEKFYWQP EDI+NIVHRMY KDG++ ++V +V TFPNQALDF
Sbjct: 280 NDFSTLYAPLIRDGRMEKFYWQPGREDIINIVHRMYIKDGLSFEDVSKVVDTFPNQALDF 339
Query: 241 YGALRSRTYDRSISK---------------WIDDIGGVENLGNKLLKRRKDKELPVFTPP 285
YGALRSRTYDR+I + W+++IGG E L KLLKR+K +ELP F PP
Sbjct: 340 YGALRSRTYDRAILQLLKMYFFANTVEDVLWVEEIGGHEQLNEKLLKRKKGEELPTFIPP 399
Query: 286 EKTVEALLESGYSLLREQQLIMETKLSKEYMKNIDD 321
+ TV+AL+ESG SL++EQ+LIM +KLSKEYMKN+DD
Sbjct: 400 KTTVDALIESGDSLVKEQELIMNSKLSKEYMKNLDD 435
>gi|115461056|ref|NP_001054128.1| Os04g0658300 [Oryza sativa Japonica Group]
gi|38346401|emb|CAE04234.2| OSJNBa0011F23.7 [Oryza sativa Japonica Group]
gi|113565699|dbj|BAF16042.1| Os04g0658300 [Oryza sativa Japonica Group]
Length = 441
Score = 536 bits (1381), Expect = e-150, Method: Compositional matrix adjust.
Identities = 252/342 (73%), Positives = 294/342 (85%), Gaps = 21/342 (6%)
Query: 1 MNIAVGARAGVIDPLFAGNFLGKDSDIVFDYRQKVTRSFEYLQGDYYIAPVFMAS----- 55
MNIAVGAR+G++D LF GNFLGKDSDIVFDYRQK TR+FEYLQGDYYIAP+F+
Sbjct: 100 MNIAVGARSGIVDDLFVGNFLGKDSDIVFDYRQKATRTFEYLQGDYYIAPLFLDKVACHI 159
Query: 56 ----------------LCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGK 99
L IWGGKGQGK+FQTELIF+AMG+EPVIMSAGELESE+AGEPG+
Sbjct: 160 VKNYLAHILTIKIPLILGIWGGKGQGKTFQTELIFRAMGVEPVIMSAGELESEKAGEPGR 219
Query: 100 LIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRV 159
LIR+RYRTASQV+QNQGKMS LMIND+DAG+GRFGNTQMTVNNQIV+GTLMNL+DNPTRV
Sbjct: 220 LIRDRYRTASQVIQNQGKMSVLMINDLDAGVGRFGNTQMTVNNQIVIGTLMNLADNPTRV 279
Query: 160 SIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKD 219
SIGQ WRESD+T+R+PII TGNDFST+YAPLIRDGRMEKFYWQP EDI+NIVHRMY KD
Sbjct: 280 SIGQKWRESDVTHRVPIIVTGNDFSTLYAPLIRDGRMEKFYWQPGREDIINIVHRMYIKD 339
Query: 220 GITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKEL 279
G++ ++V +V TFPNQALDFYGALRSRTYDR+I +W+++IGG E L KLLKR+K +EL
Sbjct: 340 GLSFEDVSKVVDTFPNQALDFYGALRSRTYDRAILQWVEEIGGHEQLNEKLLKRKKGEEL 399
Query: 280 PVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYMKNIDD 321
P F PP+ TV+AL+ESG SL++EQ+LIM +KLSKEYMKN+DD
Sbjct: 400 PTFIPPKTTVDALIESGDSLVKEQELIMNSKLSKEYMKNLDD 441
>gi|297842049|ref|XP_002888906.1| hypothetical protein ARALYDRAFT_476441 [Arabidopsis lyrata subsp.
lyrata]
gi|297334747|gb|EFH65165.1| hypothetical protein ARALYDRAFT_476441 [Arabidopsis lyrata subsp.
lyrata]
Length = 419
Score = 533 bits (1374), Expect = e-149, Method: Compositional matrix adjust.
Identities = 256/342 (74%), Positives = 293/342 (85%), Gaps = 21/342 (6%)
Query: 1 MNIAVGARAGVIDPLFAGNFLGKDSDIVFDYRQKVTRSFEYLQGDYYIAPVFMAS----- 55
+NI+VGAR+G+ID +F G+FLGKDSDIVFDYRQK TRSFE+LQGDYYIAP F+
Sbjct: 78 VNISVGARSGMIDDVFIGDFLGKDSDIVFDYRQKATRSFEHLQGDYYIAPSFLDKVAVHI 137
Query: 56 ----------------LCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGK 99
L IWGGKGQGK+FQTELIF+ MG+EPVIMSAGELES+RAGEPG+
Sbjct: 138 VKNYLAPSLNIKIPLILGIWGGKGQGKTFQTELIFKTMGVEPVIMSAGELESDRAGEPGR 197
Query: 100 LIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRV 159
LIR+RYRTASQV+QNQGKMS LMINDIDAGLGRFG TQMTVNNQIVVGTLMNL+DNPTRV
Sbjct: 198 LIRDRYRTASQVIQNQGKMSVLMINDIDAGLGRFGETQMTVNNQIVVGTLMNLADNPTRV 257
Query: 160 SIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKD 219
S+GQ+WRE+DI NR+P+I TGNDFST+YAPLIR+GRMEKFYWQP EDI+NIV RMYEKD
Sbjct: 258 SVGQEWREADIVNRVPLIVTGNDFSTLYAPLIREGRMEKFYWQPTREDIVNIVSRMYEKD 317
Query: 220 GITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKEL 279
GI++ +V SIV FPNQALDFYGALRSRTYDRSI KW+D+ GG+E LG LL+ +K KE+
Sbjct: 318 GISRKDVISIVDKFPNQALDFYGALRSRTYDRSILKWVDEAGGMETLGKILLRSKKTKEV 377
Query: 280 PVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYMKNIDD 321
P FTPPE+TVEALLESGYSL+ EQ+LIMETKLSKEYMKN+DD
Sbjct: 378 PQFTPPEQTVEALLESGYSLINEQKLIMETKLSKEYMKNMDD 419
>gi|15219376|ref|NP_177454.1| putative Rubisco activase 2 [Arabidopsis thaliana]
gi|13605706|gb|AAK32846.1|AF361834_1 At1g73110/F3N23_39 [Arabidopsis thaliana]
gi|18700270|gb|AAL77745.1| At1g73110/F3N23_39 [Arabidopsis thaliana]
gi|26452888|dbj|BAC43522.1| unknown protein [Arabidopsis thaliana]
gi|332197294|gb|AEE35415.1| putative Rubisco activase 2 [Arabidopsis thaliana]
Length = 432
Score = 533 bits (1373), Expect = e-149, Method: Compositional matrix adjust.
Identities = 255/342 (74%), Positives = 293/342 (85%), Gaps = 21/342 (6%)
Query: 1 MNIAVGARAGVIDPLFAGNFLGKDSDIVFDYRQKVTRSFEYLQGDYYIAPVFMAS----- 55
+NIAVGAR+G+ID +F G+FLGKDSDIVFDYRQK TRSFE+LQGDYYIAP F+
Sbjct: 91 VNIAVGARSGMIDDVFIGDFLGKDSDIVFDYRQKATRSFEHLQGDYYIAPSFLDKVAVHI 150
Query: 56 ----------------LCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGK 99
L IWGGKGQGK+FQTELIF+ MG+EPVIMSAGELES+RAGEPG+
Sbjct: 151 VKNYLAPSLNIKIPLILGIWGGKGQGKTFQTELIFKTMGVEPVIMSAGELESDRAGEPGR 210
Query: 100 LIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRV 159
LIR+RYRTASQV+QNQGKMS LMINDIDAGLGRFG TQMTVNNQIVVGTLMNL+DNPTRV
Sbjct: 211 LIRDRYRTASQVIQNQGKMSVLMINDIDAGLGRFGETQMTVNNQIVVGTLMNLADNPTRV 270
Query: 160 SIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKD 219
S+GQ+WRE+D+ NR+P+I TGNDFST+YAPLIR+GRMEKFYWQP EDI+NIV RMYEKD
Sbjct: 271 SVGQEWREADMVNRVPLIVTGNDFSTLYAPLIREGRMEKFYWQPTREDIVNIVSRMYEKD 330
Query: 220 GITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKEL 279
GI++ +V SIV FPNQALDFYGALRSRTYDRSI KW+D+ GG+E LG LL+R+K +E+
Sbjct: 331 GISRKDVISIVDKFPNQALDFYGALRSRTYDRSILKWVDEAGGMETLGKVLLRRKKTQEV 390
Query: 280 PVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYMKNIDD 321
P FT PE+TVEALLESGYSL+ EQ+LIMETKLSKEYMKN+DD
Sbjct: 391 PQFTAPEQTVEALLESGYSLINEQKLIMETKLSKEYMKNMDD 432
>gi|218195741|gb|EEC78168.1| hypothetical protein OsI_17750 [Oryza sativa Indica Group]
Length = 456
Score = 527 bits (1358), Expect = e-147, Method: Compositional matrix adjust.
Identities = 253/357 (70%), Positives = 295/357 (82%), Gaps = 36/357 (10%)
Query: 1 MNIAVGARAGVIDPLFAGNFLGKDSDIVFDYRQKVTRSFEYLQGDYYIAPVFMAS----- 55
MNIAVGAR+G++D LF GNFLGKDSDIVFDYRQK TR+FEYLQGDYYIAP+F+
Sbjct: 100 MNIAVGARSGIVDDLFVGNFLGKDSDIVFDYRQKATRTFEYLQGDYYIAPLFLDKVACHI 159
Query: 56 ----------------LCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGK 99
L IWGGKGQGK+FQTELIF+AMG+EPVIMSAGELESE+AGEPG+
Sbjct: 160 VKNYLAHILTIKIPLILGIWGGKGQGKTFQTELIFRAMGVEPVIMSAGELESEKAGEPGR 219
Query: 100 LIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRV 159
LIR+RYRTASQV+QNQGKMS LMIND+DAG+GRFGNTQMTVNNQIV+GTLMNL+DNPTRV
Sbjct: 220 LIRDRYRTASQVIQNQGKMSVLMINDLDAGVGRFGNTQMTVNNQIVIGTLMNLADNPTRV 279
Query: 160 SIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKD 219
SIGQ WRESD+T+R+PII TGNDFST+YAPLIRDGRMEKFYWQP+ EDI+NIVHRMY KD
Sbjct: 280 SIGQKWRESDVTHRVPIIVTGNDFSTLYAPLIRDGRMEKFYWQPDREDIINIVHRMYIKD 339
Query: 220 GITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISK---------------WIDDIGGVE 264
G++ ++V IV TFPNQALDFYGALRSRTYDR+I + W+++IGG E
Sbjct: 340 GLSFEDVSKIVDTFPNQALDFYGALRSRTYDRAILQLLKMYFFANTVEDVLWVEEIGGHE 399
Query: 265 NLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYMKNIDD 321
L KLLKR+K +ELP F PP+ TV+AL+ESG SL++EQ+LIM +KLSKEYMKN+DD
Sbjct: 400 QLNEKLLKRKKGEELPTFIPPKTTVDALIESGDSLVKEQELIMNSKLSKEYMKNLDD 456
>gi|222629697|gb|EEE61829.1| hypothetical protein OsJ_16474 [Oryza sativa Japonica Group]
Length = 456
Score = 526 bits (1355), Expect = e-147, Method: Compositional matrix adjust.
Identities = 252/357 (70%), Positives = 294/357 (82%), Gaps = 36/357 (10%)
Query: 1 MNIAVGARAGVIDPLFAGNFLGKDSDIVFDYRQKVTRSFEYLQGDYYIAPVFMAS----- 55
MNIAVGAR+G++D LF GNFLGKDSDIVFDYRQK TR+FEYLQGDYYIAP+F+
Sbjct: 100 MNIAVGARSGIVDDLFVGNFLGKDSDIVFDYRQKATRTFEYLQGDYYIAPLFLDKVACHI 159
Query: 56 ----------------LCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGK 99
L IWGGKGQGK+FQTELIF+AMG+EPVIMSAGELESE+AGEPG+
Sbjct: 160 VKNYLAHILTIKIPLILGIWGGKGQGKTFQTELIFRAMGVEPVIMSAGELESEKAGEPGR 219
Query: 100 LIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRV 159
LIR+RYRTASQV+QNQGKMS LMIND+DAG+GRFGNTQMTVNNQIV+GTLMNL+DNPTRV
Sbjct: 220 LIRDRYRTASQVIQNQGKMSVLMINDLDAGVGRFGNTQMTVNNQIVIGTLMNLADNPTRV 279
Query: 160 SIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKD 219
SIGQ WRESD+T+R+PII TGNDFST+YAPLIRDGRMEKFYWQP EDI+NIVHRMY KD
Sbjct: 280 SIGQKWRESDVTHRVPIIVTGNDFSTLYAPLIRDGRMEKFYWQPGREDIINIVHRMYIKD 339
Query: 220 GITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISK---------------WIDDIGGVE 264
G++ ++V +V TFPNQALDFYGALRSRTYDR+I + W+++IGG E
Sbjct: 340 GLSFEDVSKVVDTFPNQALDFYGALRSRTYDRAILQLLKMYFFANTVEDVLWVEEIGGHE 399
Query: 265 NLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYMKNIDD 321
L KLLKR+K +ELP F PP+ TV+AL+ESG SL++EQ+LIM +KLSKEYMKN+DD
Sbjct: 400 QLNEKLLKRKKGEELPTFIPPKTTVDALIESGDSLVKEQELIMNSKLSKEYMKNLDD 456
>gi|242077492|ref|XP_002448682.1| hypothetical protein SORBIDRAFT_06g031390 [Sorghum bicolor]
gi|241939865|gb|EES13010.1| hypothetical protein SORBIDRAFT_06g031390 [Sorghum bicolor]
Length = 433
Score = 525 bits (1353), Expect = e-147, Method: Compositional matrix adjust.
Identities = 244/342 (71%), Positives = 289/342 (84%), Gaps = 22/342 (6%)
Query: 1 MNIAVGARAGVIDPLFAGNFLGKDSDIVFDYRQKVTRSFEYLQGDYYIAPVFMAS----- 55
+N+ VGARAG++D LF GNFLGKDSDIVFDYRQK TR+FEYLQGDYYIAP F+
Sbjct: 92 LNVTVGARAGIVDDLFVGNFLGKDSDIVFDYRQKATRTFEYLQGDYYIAPAFLDKVACHI 151
Query: 56 -----------------LCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPG 98
L +WGGKGQGK+FQTELIF+AMG+EPVIMSAGELESE+AGEPG
Sbjct: 152 VKNYIGHLLNNIKIPLILGVWGGKGQGKTFQTELIFKAMGVEPVIMSAGELESEKAGEPG 211
Query: 99 KLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTR 158
+LIR+RYRTASQV+QNQGK+SCLMIND+DAG+GRFGNTQMTVNNQI VGTLMNL+DNP R
Sbjct: 212 RLIRDRYRTASQVIQNQGKLSCLMINDLDAGVGRFGNTQMTVNNQIAVGTLMNLADNPNR 271
Query: 159 VSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEK 218
VSIGQ WRESD+T+R+PII TGNDFST+YAPLIRDGRMEKFYWQP EDI++IVH MY K
Sbjct: 272 VSIGQKWRESDVTHRVPIIVTGNDFSTLYAPLIRDGRMEKFYWQPTREDIISIVHGMYRK 331
Query: 219 DGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKE 278
DG++ +EV +V TFPNQALDFYGALRSRTYDR+I +W+++IGG E L KLLKR+K +E
Sbjct: 332 DGLSAEEVARVVDTFPNQALDFYGALRSRTYDRAILEWVEEIGGHEQLRAKLLKRKKGEE 391
Query: 279 LPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYMKNID 320
LP F P+ ++EAL+ESGYSL++EQ+LIM +KLSKEYMKN++
Sbjct: 392 LPTFIAPKPSLEALIESGYSLVKEQELIMNSKLSKEYMKNLE 433
>gi|357166474|ref|XP_003580722.1| PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic-like [Brachypodium distachyon]
Length = 437
Score = 511 bits (1315), Expect = e-142, Method: Compositional matrix adjust.
Identities = 253/341 (74%), Positives = 294/341 (86%), Gaps = 21/341 (6%)
Query: 1 MNIAVGARAGVIDPLFAGNFLGKDSDIVFDYRQKVTRSFEYLQGDYYIAPVFMAS----- 55
MNIAVGAR+G+ID LF G FLG+DSDIVFDYRQKVTR FEYLQGDYYIAP F+
Sbjct: 96 MNIAVGARSGIIDDLFVGKFLGRDSDIVFDYRQKVTRKFEYLQGDYYIAPSFLDKVACHI 155
Query: 56 ----------------LCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGK 99
L +WGGKGQGK+FQTELIF+AMG+EPVIMSAGELESERAGEPG+
Sbjct: 156 VKNYLANNLNIKVPLILGVWGGKGQGKTFQTELIFKAMGVEPVIMSAGELESERAGEPGR 215
Query: 100 LIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRV 159
LIR+RYRTASQV+QNQGKMSCLMIND+DAG+GRFGNTQMTVNNQIVVGTLMNL+DNPTRV
Sbjct: 216 LIRDRYRTASQVIQNQGKMSCLMINDLDAGVGRFGNTQMTVNNQIVVGTLMNLADNPTRV 275
Query: 160 SIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKD 219
SIGQ WRESDIT+R+PII TGNDFST+YAPLIRDGRMEKFYWQP+ EDI+NIVHRMY KD
Sbjct: 276 SIGQKWRESDITHRVPIIATGNDFSTLYAPLIRDGRMEKFYWQPDREDIINIVHRMYMKD 335
Query: 220 GITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKEL 279
G++ +EV IV TFPNQALDFYGALRSRTYD++I +W++DIGG E LG KLLK++K ++L
Sbjct: 336 GLSFEEVSRIVDTFPNQALDFYGALRSRTYDQAILQWVNDIGGYEQLGEKLLKKKKREKL 395
Query: 280 PVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYMKNID 320
P F PP+ T++AL+ESG SL++EQ+LIM +KLSKEYMKN++
Sbjct: 396 PTFIPPKPTLDALIESGDSLVKEQELIMNSKLSKEYMKNLE 436
>gi|168063726|ref|XP_001783820.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162664649|gb|EDQ51360.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 458
Score = 473 bits (1216), Expect = e-131, Method: Compositional matrix adjust.
Identities = 222/339 (65%), Positives = 272/339 (80%), Gaps = 22/339 (6%)
Query: 1 MNIAVGARAGVIDPLFAGNFLGKDSDIVFDYRQKVTRSFEYLQGDYYIAPVFMAS----- 55
+NI VGAR G+ID LF G+FLGK++DIVF YRQKVTRSFE++ GDYYIAP FM
Sbjct: 106 LNITVGARTGMIDSLFTGDFLGKEADIVFKYRQKVTRSFEHITGDYYIAPAFMDKVVTHI 165
Query: 56 ----------------LCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGK 99
L +WGGKGQGKSFQTELIF+AMGIEP+IMSAGE+ESE AGEPGK
Sbjct: 166 VKNYLAAQIDGKVPLILGVWGGKGQGKSFQTELIFKAMGIEPIIMSAGEMESEWAGEPGK 225
Query: 100 LIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRV 159
LIRERYR A V+ NQGKMSCLMIND+DAG+GRF NTQMTVNNQ+VVGTLMNL+DNP RV
Sbjct: 226 LIRERYRAAHLVINNQGKMSCLMINDLDAGIGRFENTQMTVNNQMVVGTLMNLADNPNRV 285
Query: 160 SIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKD 219
S+GQ WRE+DI NR+PII TGNDFSTI+APLIRDGRM+KFYWQP +D++ IV++MY+KD
Sbjct: 286 SVGQAWREADIVNRVPIIVTGNDFSTIWAPLIRDGRMDKFYWQPTRDDLVKIVYQMYKKD 345
Query: 220 GITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRK-DKE 278
G+++ ++G I+ TFPNQALDFYGALRSRTYD+ + +W+++IGG E +G KLL+R+K D
Sbjct: 346 GLSEADIGFIIDTFPNQALDFYGALRSRTYDKHVLEWVNEIGGAEQIGPKLLRRKKGDAP 405
Query: 279 LPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYMK 317
LP F PE+ V+ L+++GY L+ EQ ++ KLS EYMK
Sbjct: 406 LPEFIAPEQNVDDLIKAGYELVEEQNMVNNMKLSDEYMK 444
>gi|302769017|ref|XP_002967928.1| hypothetical protein SELMODRAFT_88296 [Selaginella moellendorffii]
gi|300164666|gb|EFJ31275.1| hypothetical protein SELMODRAFT_88296 [Selaginella moellendorffii]
Length = 421
Score = 462 bits (1190), Expect = e-128, Method: Compositional matrix adjust.
Identities = 219/336 (65%), Positives = 274/336 (81%), Gaps = 21/336 (6%)
Query: 1 MNIAVGARAGVIDPLFAGNFLGKDSDIVFDYRQKVTRSFEYLQGDYYIAPVFMAS----- 55
MNI VGAR G+ID +F G+FLGK++DIVF YRQKVTRSFE+LQGDYYIAP F+
Sbjct: 76 MNITVGARQGMIDSVFVGDFLGKEADIVFAYRQKVTRSFEHLQGDYYIAPAFLVLTHIVK 135
Query: 56 --------------LCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLI 101
L +WGGKGQGK+FQTELIF+AMG+EPVIMSAGE+ESERAGEPG+LI
Sbjct: 136 NYVAEQLDTSVPLILGVWGGKGQGKTFQTELIFKAMGVEPVIMSAGEMESERAGEPGRLI 195
Query: 102 RERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSI 161
R+RYRTA+QVV+NQGK+SCLMINDIDAG+GRF NTQMTVNNQIVVGTLMNL+DNPT+VS+
Sbjct: 196 RDRYRTAAQVVKNQGKLSCLMINDIDAGIGRFENTQMTVNNQIVVGTLMNLADNPTQVSV 255
Query: 162 GQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGI 221
GQDWRE D+ R+PII TGNDFST++APLIRDGRM+KFYWQP+ ED++NIV+RMY KDG+
Sbjct: 256 GQDWREGDVIKRVPIIVTGNDFSTLWAPLIRDGRMDKFYWQPSREDLINIVYRMYSKDGL 315
Query: 222 TKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPV 281
++ +V +IV FPNQALDFYGAL+SR D + KW++ GG E L N++ ++ K K +
Sbjct: 316 SRVDVETIVDKFPNQALDFYGALKSRACDEELWKWLESNGGPEKL-NEIFRQSKKKTID- 373
Query: 282 FTPPEKTVEALLESGYSLLREQQLIMETKLSKEYMK 317
F PPE+T+ +LL++G SL+ EQ+++ + +LS EYMK
Sbjct: 374 FNPPEQTLTSLLKAGTSLVEEQKMVTKMRLSDEYMK 409
>gi|302761150|ref|XP_002963997.1| hypothetical protein SELMODRAFT_82367 [Selaginella moellendorffii]
gi|300167726|gb|EFJ34330.1| hypothetical protein SELMODRAFT_82367 [Selaginella moellendorffii]
Length = 421
Score = 462 bits (1188), Expect = e-127, Method: Compositional matrix adjust.
Identities = 219/336 (65%), Positives = 274/336 (81%), Gaps = 21/336 (6%)
Query: 1 MNIAVGARAGVIDPLFAGNFLGKDSDIVFDYRQKVTRSFEYLQGDYYIAPVFMAS----- 55
MNI VGAR G+ID +F G+FLGK++DIVF YRQKVTRSFE+LQGDYYIAP F+
Sbjct: 76 MNITVGARQGMIDNVFVGDFLGKEADIVFAYRQKVTRSFEHLQGDYYIAPAFLVLTHIVK 135
Query: 56 --------------LCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLI 101
L +WGGKGQGK+FQTELIF+AMG+EPVIMSAGE+ESERAGEPG+LI
Sbjct: 136 NYVAEQLDTSVPLILGVWGGKGQGKTFQTELIFKAMGVEPVIMSAGEMESERAGEPGRLI 195
Query: 102 RERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSI 161
R+RYRTA+QVV+NQGK+SCLMINDIDAG+GRF NTQMTVNNQIVVGTLMNL+DNPT+VS+
Sbjct: 196 RDRYRTAAQVVKNQGKLSCLMINDIDAGIGRFENTQMTVNNQIVVGTLMNLADNPTQVSV 255
Query: 162 GQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGI 221
GQDWRE D+ R+PII TGNDFST++APLIRDGRM+KFYWQP+ ED++NIV+RMY KDG+
Sbjct: 256 GQDWREGDVIKRVPIIVTGNDFSTLWAPLIRDGRMDKFYWQPSREDLINIVYRMYSKDGL 315
Query: 222 TKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPV 281
++ +V +IV FPNQALDFYGAL+SR D + KW++ GG E L N++ ++ K K +
Sbjct: 316 SRVDVETIVDKFPNQALDFYGALKSRACDEELWKWLESNGGPEKL-NEIFRQSKKKTID- 373
Query: 282 FTPPEKTVEALLESGYSLLREQQLIMETKLSKEYMK 317
F PPE+T+ +LL++G SL+ EQ+++ + +LS EYMK
Sbjct: 374 FNPPEQTLTSLLKAGTSLVEEQKMVTKMRLSDEYMK 409
>gi|47176692|gb|AAT12492.1| putative RuBisCo activase protein [Zantedeschia hybrid cultivar]
Length = 244
Score = 424 bits (1090), Expect = e-116, Method: Compositional matrix adjust.
Identities = 199/244 (81%), Positives = 223/244 (91%)
Query: 78 GIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQ 137
GIEP+IMSAGELESE AGEPG+LIRERYRTASQVVQNQGKMSCL INDIDAGLGRFGNTQ
Sbjct: 1 GIEPIIMSAGELESENAGEPGRLIRERYRTASQVVQNQGKMSCLTINDIDAGLGRFGNTQ 60
Query: 138 MTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRME 197
+TVNNQI VGTLMNLSDNPTRVSIGQ WRESD+T+RIP+I TGNDFST+YAPLIRDGRME
Sbjct: 61 VTVNNQIAVGTLMNLSDNPTRVSIGQKWRESDVTHRIPVIVTGNDFSTLYAPLIRDGRME 120
Query: 198 KFYWQPNLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWI 257
KFYWQP EDI+NIV RMYEKDGI++D V SIV +FPNQALDFYGALRSRTYD+S KWI
Sbjct: 121 KFYWQPTHEDIINIVQRMYEKDGISRDAVESIVDSFPNQALDFYGALRSRTYDKSTLKWI 180
Query: 258 DDIGGVENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYMK 317
D+IGG ENL +KLL+ RK+ +LP F PP++T+EALLESG+SL+ EQ+LIM TKLSKEYMK
Sbjct: 181 DEIGGYENLSDKLLRERKEGKLPTFVPPKQTLEALLESGHSLIEEQELIMNTKLSKEYMK 240
Query: 318 NIDD 321
N+DD
Sbjct: 241 NMDD 244
>gi|5903100|gb|AAD55658.1|AC008017_31 Highly similar to ribulose-1,5-bisphosphate carboxylase/oxygenase
activase [Arabidopsis thaliana]
Length = 245
Score = 420 bits (1079), Expect = e-115, Method: Compositional matrix adjust.
Identities = 196/245 (80%), Positives = 225/245 (91%)
Query: 77 MGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNT 136
MG+EPVIMSAGELES+RAGEPG+LIR+RYRTASQV+QNQGKMS LMINDIDAGLGRFG T
Sbjct: 1 MGVEPVIMSAGELESDRAGEPGRLIRDRYRTASQVIQNQGKMSVLMINDIDAGLGRFGET 60
Query: 137 QMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRM 196
QMTVNNQIVVGTLMNL+DNPTRVS+GQ+WRE+D+ NR+P+I TGNDFST+YAPLIR+GRM
Sbjct: 61 QMTVNNQIVVGTLMNLADNPTRVSVGQEWREADMVNRVPLIVTGNDFSTLYAPLIREGRM 120
Query: 197 EKFYWQPNLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKW 256
EKFYWQP EDI+NIV RMYEKDGI++ +V SIV FPNQALDFYGALRSRTYDRSI KW
Sbjct: 121 EKFYWQPTREDIVNIVSRMYEKDGISRKDVISIVDKFPNQALDFYGALRSRTYDRSILKW 180
Query: 257 IDDIGGVENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYM 316
+D+ GG+E LG LL+R+K +E+P FT PE+TVEALLESGYSL+ EQ+LIMETKLSKEYM
Sbjct: 181 VDEAGGMETLGKVLLRRKKTQEVPQFTAPEQTVEALLESGYSLINEQKLIMETKLSKEYM 240
Query: 317 KNIDD 321
KN+DD
Sbjct: 241 KNMDD 245
>gi|307108081|gb|EFN56322.1| hypothetical protein CHLNCDRAFT_144763 [Chlorella variabilis]
Length = 434
Score = 362 bits (928), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 181/353 (51%), Positives = 240/353 (67%), Gaps = 39/353 (11%)
Query: 1 MNIAVGARAGVIDPLFAGNFLGKDSDIV-FDYRQKVTRSFEYLQGDYYIAPVFMAS---- 55
+N+ G AG+ID +F GN LG SDI R R++ + GDYYIAP F+
Sbjct: 71 INVDHGQTAGMIDSIFTGNVLGHKSDIADGSLRTYEFRTYNNIVGDYYIAPRFLEKIALH 130
Query: 56 ---------------------LCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERA 94
L IWGGKGQGK+FQTEL F+ +G+EP+IMSAGELE+E A
Sbjct: 131 IAKNFLLEFGALDSATRVPLILGIWGGKGQGKTFQTELCFKKLGVEPIIMSAGELENEWA 190
Query: 95 GEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSD 154
G PGKLIRERYR A++V + GK+SCLMIND+DAG+G F NTQ+TVNNQ+VVGTLMN+ D
Sbjct: 191 GVPGKLIRERYRRAAEVSKVHGKLSCLMINDLDAGIGHFENTQITVNNQMVVGTLMNICD 250
Query: 155 NPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHR 214
NPTR+SIGQ W E+D+T RIPII TGNDFSTI+APL+RDGRM+KFYWQP ED++ I+H+
Sbjct: 251 NPTRISIGQGWMENDVTRRIPIIVTGNDFSTIFAPLVRDGRMDKFYWQPTEEDLVGILHQ 310
Query: 215 MYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWI----------DDIGGVE 264
MY+ DG+++ ++ ++++ FP Q LDF+GALRS TYD I +WI +D +
Sbjct: 311 MYKDDGLSESDMAALLRAFPGQTLDFFGALRSSTYDGQIRQWIKQDVIHGEIAEDNQNMR 370
Query: 265 NLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYMK 317
LG +LL++ ++LP F P + T+ L+E G L EQ ++ +LS EY+K
Sbjct: 371 ELGRRLLRQ---EDLPQFEPVDLTLLMLMEEGRRLQAEQDMVNSMRLSDEYLK 420
>gi|384253471|gb|EIE26946.1| hypothetical protein COCSUDRAFT_11792, partial [Coccomyxa
subellipsoidea C-169]
Length = 404
Score = 342 bits (877), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 176/359 (49%), Positives = 237/359 (66%), Gaps = 43/359 (11%)
Query: 1 MNIAVGARAGVIDPLFAGNFLGKDSDIV-FDYRQKVTRSFEYLQGDYYIAPVFMAS---- 55
+N++ G + ID LF GN LG +SDI R RSF + GDYY++P F+ +
Sbjct: 35 INVSHGQSSKFIDHLFTGNVLGHESDIADGSLRGWEFRSFANIVGDYYVSPRFLDAVAMH 94
Query: 56 ---------------------LCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERA 94
L IWG KGQGK+FQTEL F+ +GIEPV+MSAGELESE A
Sbjct: 95 IVKNWMVDNGAFDPSHRVPLILGIWGPKGQGKTFQTELTFKKLGIEPVVMSAGELESEWA 154
Query: 95 GEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSD 154
G PG+LIR+RYR A++V + +G++ CLMIND+DAG+G N Q TVNNQ+V GTLMNL D
Sbjct: 155 GAPGRLIRDRYRRAAEVAKVRGRLPCLMINDLDAGVGIQENVQRTVNNQMVSGTLMNLCD 214
Query: 155 NPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHR 214
NP RVS+ Q WR+SD+ R+PII TGNDFST++APL+RDGRM KFYW+P+ D+LNI+H+
Sbjct: 215 NPNRVSVFQVWRDSDLVQRVPIIVTGNDFSTLFAPLVRDGRMAKFYWEPDRIDLLNILHQ 274
Query: 215 MYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWI----------DDIGGVE 264
MY++DG++ ++ +++ TFP Q+LDF+GALR+ TYD I +WI D+ +
Sbjct: 275 MYKEDGLSVEDTQTLLDTFPGQSLDFFGALRAATYDNQIRRWIKEEVVKADITDEDANMR 334
Query: 265 NLGNKLLK-----RRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYMKN 318
L +L+ RRKD LP F P + +E LL+ G+ L EQ+ + KLS+EYMKN
Sbjct: 335 ELSKRLIDHMHVVRRKD--LPSFEPVDLKLEDLLKEGHRLAEEQENVNRLKLSEEYMKN 391
>gi|326493048|dbj|BAJ84985.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326524450|dbj|BAK00608.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 206
Score = 339 bits (869), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 156/206 (75%), Positives = 182/206 (88%)
Query: 116 GKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIP 175
GKMSCLMIND+DAGLGRFGNTQMTVNNQIVVGTLMNL+DNP RVS+GQ WRESDIT+RIP
Sbjct: 1 GKMSCLMINDLDAGLGRFGNTQMTVNNQIVVGTLMNLADNPNRVSVGQKWRESDITHRIP 60
Query: 176 IIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITKDEVGSIVKTFPN 235
II TGNDFST+YAPLIRDGRMEKFYWQP EDI+NI+HRMY KDG++ +EV SIV TFPN
Sbjct: 61 IIATGNDFSTLYAPLIRDGRMEKFYWQPTREDIINIIHRMYTKDGLSLEEVSSIVDTFPN 120
Query: 236 QALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVFTPPEKTVEALLES 295
QALDFYGALRSRTYD++I +W++DIGG E LG KLLKR+ ++LP F PP+ T++AL++S
Sbjct: 121 QALDFYGALRSRTYDQAILQWVNDIGGYEQLGEKLLKRKNREKLPTFIPPKPTLDALIQS 180
Query: 296 GYSLLREQQLIMETKLSKEYMKNIDD 321
G SL+ EQ +M + LSKEYMKNIDD
Sbjct: 181 GNSLVEEQAFVMNSNLSKEYMKNIDD 206
>gi|414585019|tpg|DAA35590.1| TPA: hypothetical protein ZEAMMB73_040721 [Zea mays]
Length = 203
Score = 335 bits (860), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 153/203 (75%), Positives = 182/203 (89%)
Query: 118 MSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPII 177
MSCLMIND+DAG+GRFGNTQMTVNNQI VGTLMNL+DNPTRVSIGQ WRESD+T+R+PII
Sbjct: 1 MSCLMINDLDAGVGRFGNTQMTVNNQIAVGTLMNLADNPTRVSIGQKWRESDVTHRVPII 60
Query: 178 FTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQA 237
TGNDFST+YAPLIRDGRMEKFYWQPN EDI++IVH MY KDG++ +EV IV FPNQA
Sbjct: 61 VTGNDFSTLYAPLIRDGRMEKFYWQPNREDIISIVHGMYIKDGLSVEEVSRIVDAFPNQA 120
Query: 238 LDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVFTPPEKTVEALLESGY 297
LDFYGALRSRTYD++I +W+++IGG E L KLLKR+K +ELP F PP+ T+EAL+ESGY
Sbjct: 121 LDFYGALRSRTYDQAILEWVEEIGGHEQLNEKLLKRKKGEELPTFIPPKPTLEALIESGY 180
Query: 298 SLLREQQLIMETKLSKEYMKNID 320
SL++EQ+LIM +KLSKEYMKN++
Sbjct: 181 SLVKEQELIMSSKLSKEYMKNLE 203
>gi|388515017|gb|AFK45570.1| unknown [Lotus japonicus]
Length = 184
Score = 334 bits (856), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 156/184 (84%), Positives = 174/184 (94%)
Query: 138 MTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRME 197
MTVNNQIVVGTLMNLSDNPTRVS+GQDWRESDITNRIPII TGNDFSTIYAPLIRDGRM+
Sbjct: 1 MTVNNQIVVGTLMNLSDNPTRVSVGQDWRESDITNRIPIIVTGNDFSTIYAPLIRDGRMD 60
Query: 198 KFYWQPNLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWI 257
KFYWQPN EDI NIVHRMYEKDGI++DEV IV TFPNQALDFYGALRSRTYD+SI KW+
Sbjct: 61 KFYWQPNREDIQNIVHRMYEKDGISRDEVERIVDTFPNQALDFYGALRSRTYDKSILKWV 120
Query: 258 DDIGGVENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYMK 317
DDIGGVEN G+K+LKRRKD+ LPVF PPE+TV+ALLESGYSL++EQ+L+ME+KLSKEYMK
Sbjct: 121 DDIGGVENFGSKILKRRKDQNLPVFIPPEQTVDALLESGYSLIKEQELVMESKLSKEYMK 180
Query: 318 NIDD 321
N++D
Sbjct: 181 NMED 184
>gi|159491655|ref|XP_001703775.1| RuBisCO activase-like protein [Chlamydomonas reinhardtii]
gi|158270456|gb|EDO96301.1| RuBisCO activase-like protein [Chlamydomonas reinhardtii]
Length = 533
Score = 315 bits (807), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 170/354 (48%), Positives = 220/354 (62%), Gaps = 35/354 (9%)
Query: 1 MNIAVGARAGVIDPLFAGNFLGKDSDIVFDYRQKVT-RSFEYLQGDYYIAPVFMAS---- 55
+N+ G ID LFAG LG SDI + V R F + GDYY+AP F+
Sbjct: 118 INVDHGQSVDHIDSLFAGEVLGHKSDIADGSLRAVDFRVFNNIVGDYYVAPAFLMKVAMH 177
Query: 56 ---------------------LCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERA 94
L IWG KG GK+FQTEL + +G E V+MS+GELE E A
Sbjct: 178 MAKNYLFDLGAMSANTRVPLILGIWGEKGMGKTFQTELALKKLGAETVVMSSGELEHEWA 237
Query: 95 GEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSD 154
G PGKLIRERYR AS++ + +GKM+ L+I+DIDAGLG F + Q+TVNNQIV+GTLMN+ D
Sbjct: 238 GTPGKLIRERYRKASEMSKVRGKMTALLIHDIDAGLGHFDHVQVTVNNQIVIGTLMNICD 297
Query: 155 NPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHR 214
NP VS GQDW R PII TGNDFS ++APLIRDGRM+K+YW+P ED++NIV +
Sbjct: 298 NPNVVSTGQDWFAVSRIRRTPIIVTGNDFSKMFAPLIRDGRMDKYYWKPTREDMVNIVLQ 357
Query: 215 MYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWID-DIGGVE------NLG 267
MY+ DGIT+ +V +++ F +Q LDFYGALR+ TYD I WI D+ G E NL
Sbjct: 358 MYQDDGITRRDVEALLDRFRHQPLDFYGALRASTYDEQIRDWIKTDVTGEEFIADAANLS 417
Query: 268 N--KLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYMKNI 319
N K L E+P F P T++ L+ G L EQQ + + KLS++Y+K++
Sbjct: 418 NMAKTLLSVDRSEMPKFEPVRLTLDMLVAEGERLEMEQQQVNDHKLSEQYLKHV 471
>gi|302803723|ref|XP_002983614.1| hypothetical protein SELMODRAFT_445595 [Selaginella moellendorffii]
gi|300148451|gb|EFJ15110.1| hypothetical protein SELMODRAFT_445595 [Selaginella moellendorffii]
Length = 440
Score = 306 bits (785), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 154/333 (46%), Positives = 215/333 (64%), Gaps = 30/333 (9%)
Query: 10 GVIDPLFAGNF-LGKDSDIV--FDYRQKVTRSFEY--LQGDYYIAPVFMASLCI------ 58
G++D L+ G +G + I+ ++Y R+F + + +YIAP FM L I
Sbjct: 94 GMVDTLYQGAMGMGTQTAIMSSYEYISTAQRNFAFDNTKDGFYIAPAFMEKLMIHIAKNF 153
Query: 59 --------------WGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRER 104
WGGKGQGKSFQ EL+F +G+ P++MSAGELES AGEP KLIR+R
Sbjct: 154 MSLPNIKVPLILGIWGGKGQGKSFQCELVFSKLGVNPIMMSAGELESGNAGEPAKLIRQR 213
Query: 105 YRTASQVVQNQGKMSCLMINDIDAGLGRF-GNTQMTVNNQIVVGTLMNLSDNPTRVSIGQ 163
YR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ+V TLMN++DNPT V +
Sbjct: 214 YREAADIIKKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPG 273
Query: 164 DWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITK 223
+ + +I R+PII TGNDFST+YAPLIRDGRMEK+YW P ED + + ++ DGI +
Sbjct: 274 IYNKEEIP-RVPIIVTGNDFSTLYAPLIRDGRMEKYYWAPTREDRIGVCKGIFRTDGIAE 332
Query: 224 DEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVFT 283
D++ +V FP Q++DF+GALR+R YD + KWI+ GVEN+G+KL+ R P F
Sbjct: 333 DDMVKLVDAFPGQSIDFFGALRARVYDDEVRKWIEST-GVENIGSKLVNSRDGP--PTFA 389
Query: 284 PPEKTVEALLESGYSLLREQQLIMETKLSKEYM 316
P T+ L+ GY L++EQ+ + +L+++YM
Sbjct: 390 KPAMTINKLMSYGYMLVKEQENVKRVQLAEKYM 422
>gi|302802165|ref|XP_002982838.1| hypothetical protein SELMODRAFT_268623 [Selaginella moellendorffii]
gi|300149428|gb|EFJ16083.1| hypothetical protein SELMODRAFT_268623 [Selaginella moellendorffii]
Length = 440
Score = 305 bits (781), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 154/333 (46%), Positives = 215/333 (64%), Gaps = 30/333 (9%)
Query: 10 GVIDPLFAGNF-LGKDSDIV--FDYRQKVTRSFEY--LQGDYYIAPVFMASLCI------ 58
G++D L+ G +G + I+ ++Y R+F + + +YIAP FM L I
Sbjct: 94 GMVDTLYQGAIGMGTQNAIMSSYEYISTAQRNFAFDNTKDGFYIAPAFMEKLMIHIAKNF 153
Query: 59 --------------WGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRER 104
WGGKGQGKSFQ EL+F +G+ P++MSAGELES AGEP KLIR+R
Sbjct: 154 MSLPNIKVPLILGIWGGKGQGKSFQCELVFSKLGVNPIMMSAGELESGNAGEPAKLIRQR 213
Query: 105 YRTASQVVQNQGKMSCLMINDIDAGLGRF-GNTQMTVNNQIVVGTLMNLSDNPTRVSIGQ 163
YR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ+V TLMN++DNPT V +
Sbjct: 214 YREAADIIKKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPG 273
Query: 164 DWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITK 223
+ + +I R+PII TGNDFST+YAPLIRDGRMEK+YW P ED + + ++ DGI+
Sbjct: 274 IYNKEEIP-RVPIIVTGNDFSTLYAPLIRDGRMEKYYWAPTREDRIGVCKGIFRTDGISD 332
Query: 224 DEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVFT 283
D++ +V FP Q++DF+GALR+R YD + KWI+ GVEN+G+KL+ R P F
Sbjct: 333 DDMVRLVDAFPGQSIDFFGALRARVYDDEVRKWIEST-GVENIGSKLVNSRDGP--PTFA 389
Query: 284 PPEKTVEALLESGYSLLREQQLIMETKLSKEYM 316
P T+ L+ GY L++EQ+ + +L+++YM
Sbjct: 390 KPAMTINKLMSYGYMLVKEQENVKRVQLAEKYM 422
>gi|118489408|gb|ABK96507.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 461
Score = 297 bits (760), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 154/335 (45%), Positives = 215/335 (64%), Gaps = 30/335 (8%)
Query: 10 GVIDPLF-AGNFLGKDSDIV--FDYRQKVTRSF--EYLQGDYYIAPVFMAS--------- 55
G++D LF A G + ++ ++Y + R++ + + YYIAP FM
Sbjct: 92 GMVDSLFQAPQGTGTHNPVLSSYEYLSQGLRTYNLDNMMDGYYIAPAFMDKIVVHISKNF 151
Query: 56 -----------LCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRER 104
L IWGGKGQGKSFQ EL+F MGI P++MSAGELES AGEP KLIR+R
Sbjct: 152 MSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGISPIMMSAGELESGNAGEPAKLIRQR 211
Query: 105 YRTASQVVQNQGKMSCLMINDIDAGLGRF-GNTQMTVNNQIVVGTLMNLSDNPTRVSIGQ 163
YR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ+V TLMN++DNPT V +
Sbjct: 212 YREAADIIKKKGKMCCLFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPG 271
Query: 164 DWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITK 223
+ + D R+PII TGNDFST+YAPLIRDGRMEKFYW P +D + + +++ D + +
Sbjct: 272 MYNKED-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCIGIFKTDNVPQ 330
Query: 224 DEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVFT 283
D++ +V TFP Q++DF+GALR+R YD + KW+ + GVE++G KL+ R+ P F
Sbjct: 331 DDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWVSGV-GVESIGKKLVNSREGP--PTFE 387
Query: 284 PPEKTVEALLESGYSLLREQQLIMETKLSKEYMKN 318
P TVE L E G L++EQ+ + +L+ +Y+ +
Sbjct: 388 QPAMTVEKLFEYGNMLVKEQENVKRVQLADKYLSD 422
>gi|8918361|dbj|BAA97584.1| RuBisCO activase small isoform precursor [Oryza sativa]
gi|62733169|gb|AAX95286.1| RuBisCO activase small isoform precursor [Oryza sativa Japonica
Group]
gi|77552726|gb|ABA95523.1| Ribulose bisphosphate carboxylase/oxygenase activase, chloroplast
precursor, putative, expressed [Oryza sativa Japonica
Group]
gi|215694316|dbj|BAG89309.1| unnamed protein product [Oryza sativa Japonica Group]
gi|347737190|gb|AEP20546.1| ribulose bisphosphate carboxylase activase small isoform [Oryza
sativa Japonica Group]
Length = 433
Score = 297 bits (760), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 148/302 (49%), Positives = 200/302 (66%), Gaps = 26/302 (8%)
Query: 36 TRSFEYLQGDYYIAPVFMASLC--------------------IWGGKGQGKSFQTELIFQ 75
T F+ G +YIAP FM L IWGGKGQGKSFQ EL+F
Sbjct: 112 TYDFDNTMGGFYIAPAFMDKLVVHISKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFA 171
Query: 76 AMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG- 134
MGI P++MSAGELES AGEP KLIR+RYR A+ +++ +GKM CL IND+DAG GR G
Sbjct: 172 KMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGG 230
Query: 135 NTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDG 194
TQ TVNNQ+V TLMN++DNPT V + + + D R+PII TGNDFST+YAPLIRDG
Sbjct: 231 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKED-NPRVPIIVTGNDFSTLYAPLIRDG 289
Query: 195 RMEKFYWQPNLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSIS 254
RMEKFYW P +D + + ++ D + +++ IV +FP Q++DF+GALR+R YD +
Sbjct: 290 RMEKFYWAPTRDDRVGVCKGIFRTDNVPDEDIVKIVDSFPGQSIDFFGALRARVYDDEVR 349
Query: 255 KWIDDIGGVENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKE 314
KW+ D GVEN+G +L+ R+ P F P+ T+E L+E GY L++EQ+ + +L+++
Sbjct: 350 KWVSDT-GVENIGKRLVNSREGP--PEFEQPKMTIEKLMEYGYMLVKEQENVKRVQLAEQ 406
Query: 315 YM 316
Y+
Sbjct: 407 YL 408
>gi|108864713|gb|ABG22614.1| Ribulose bisphosphate carboxylase/oxygenase activase, chloroplast
precursor, putative, expressed [Oryza sativa Japonica
Group]
Length = 428
Score = 297 bits (760), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 148/302 (49%), Positives = 200/302 (66%), Gaps = 26/302 (8%)
Query: 36 TRSFEYLQGDYYIAPVFMASLC--------------------IWGGKGQGKSFQTELIFQ 75
T F+ G +YIAP FM L IWGGKGQGKSFQ EL+F
Sbjct: 112 TYDFDNTMGGFYIAPAFMDKLVVHISKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFA 171
Query: 76 AMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG- 134
MGI P++MSAGELES AGEP KLIR+RYR A+ +++ +GKM CL IND+DAG GR G
Sbjct: 172 KMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGG 230
Query: 135 NTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDG 194
TQ TVNNQ+V TLMN++DNPT V + + + D R+PII TGNDFST+YAPLIRDG
Sbjct: 231 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKED-NPRVPIIVTGNDFSTLYAPLIRDG 289
Query: 195 RMEKFYWQPNLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSIS 254
RMEKFYW P +D + + ++ D + +++ IV +FP Q++DF+GALR+R YD +
Sbjct: 290 RMEKFYWAPTRDDRVGVCKGIFRTDNVPDEDIVKIVDSFPGQSIDFFGALRARVYDDEVR 349
Query: 255 KWIDDIGGVENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKE 314
KW+ D GVEN+G +L+ R+ P F P+ T+E L+E GY L++EQ+ + +L+++
Sbjct: 350 KWVSDT-GVENIGKRLVNSREGP--PEFEQPKMTIEKLMEYGYMLVKEQENVKRVQLAEQ 406
Query: 315 YM 316
Y+
Sbjct: 407 YL 408
>gi|109940135|sp|P93431.2|RCA_ORYSJ RecName: Full=Ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic; Short=RA; Short=RuBisCO activase; Flags:
Precursor
gi|8918359|dbj|BAA97583.1| RuBisCO activase large isoform precursor [Oryza sativa (japonica
cultivar-group)]
gi|32352158|dbj|BAC78572.1| ribulose-bisphosphate carboxylase activase large isoform precursor
protein [Oryza sativa Japonica Group]
gi|77552725|gb|ABA95522.1| Ribulose bisphosphate carboxylase/oxygenase activase, chloroplast
precursor, putative, expressed [Oryza sativa Japonica
Group]
gi|125578108|gb|EAZ19330.1| hypothetical protein OsJ_34880 [Oryza sativa Japonica Group]
gi|218186228|gb|EEC68655.1| hypothetical protein OsI_37096 [Oryza sativa Indica Group]
Length = 466
Score = 297 bits (760), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 148/302 (49%), Positives = 200/302 (66%), Gaps = 26/302 (8%)
Query: 36 TRSFEYLQGDYYIAPVFMASLC--------------------IWGGKGQGKSFQTELIFQ 75
T F+ G +YIAP FM L IWGGKGQGKSFQ EL+F
Sbjct: 112 TYDFDNTMGGFYIAPAFMDKLVVHISKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFA 171
Query: 76 AMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG- 134
MGI P++MSAGELES AGEP KLIR+RYR A+ +++ +GKM CL IND+DAG GR G
Sbjct: 172 KMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGG 230
Query: 135 NTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDG 194
TQ TVNNQ+V TLMN++DNPT V + + + D R+PII TGNDFST+YAPLIRDG
Sbjct: 231 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKED-NPRVPIIVTGNDFSTLYAPLIRDG 289
Query: 195 RMEKFYWQPNLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSIS 254
RMEKFYW P +D + + ++ D + +++ IV +FP Q++DF+GALR+R YD +
Sbjct: 290 RMEKFYWAPTRDDRVGVCKGIFRTDNVPDEDIVKIVDSFPGQSIDFFGALRARVYDDEVR 349
Query: 255 KWIDDIGGVENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKE 314
KW+ D GVEN+G +L+ R+ P F P+ T+E L+E GY L++EQ+ + +L+++
Sbjct: 350 KWVSDT-GVENIGKRLVNSREGP--PEFEQPKMTIEKLMEYGYMLVKEQENVKRVQLAEQ 406
Query: 315 YM 316
Y+
Sbjct: 407 YL 408
>gi|108864712|gb|ABG22613.1| Ribulose bisphosphate carboxylase/oxygenase activase, chloroplast
precursor, putative, expressed [Oryza sativa Japonica
Group]
Length = 348
Score = 297 bits (760), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 148/302 (49%), Positives = 200/302 (66%), Gaps = 26/302 (8%)
Query: 36 TRSFEYLQGDYYIAPVFMASLC--------------------IWGGKGQGKSFQTELIFQ 75
T F+ G +YIAP FM L IWGGKGQGKSFQ EL+F
Sbjct: 27 TYDFDNTMGGFYIAPAFMDKLVVHISKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFA 86
Query: 76 AMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG- 134
MGI P++MSAGELES AGEP KLIR+RYR A+ +++ +GKM CL IND+DAG GR G
Sbjct: 87 KMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGG 145
Query: 135 NTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDG 194
TQ TVNNQ+V TLMN++DNPT V + + + D R+PII TGNDFST+YAPLIRDG
Sbjct: 146 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKED-NPRVPIIVTGNDFSTLYAPLIRDG 204
Query: 195 RMEKFYWQPNLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSIS 254
RMEKFYW P +D + + ++ D + +++ IV +FP Q++DF+GALR+R YD +
Sbjct: 205 RMEKFYWAPTRDDRVGVCKGIFRTDNVPDEDIVKIVDSFPGQSIDFFGALRARVYDDEVR 264
Query: 255 KWIDDIGGVENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKE 314
KW+ D GVEN+G +L+ R+ P F P+ T+E L+E GY L++EQ+ + +L+++
Sbjct: 265 KWVSDT-GVENIGKRLVNSREGP--PEFEQPKMTIEKLMEYGYMLVKEQENVKRVQLAEQ 321
Query: 315 YM 316
Y+
Sbjct: 322 YL 323
>gi|118486739|gb|ABK95205.1| unknown [Populus trichocarpa]
Length = 475
Score = 296 bits (759), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 154/335 (45%), Positives = 215/335 (64%), Gaps = 30/335 (8%)
Query: 10 GVIDPLF-AGNFLGKDSDIV--FDYRQKVTRSF--EYLQGDYYIAPVFMAS--------- 55
G++D LF A G + ++ ++Y + R++ + + +YIAP FM
Sbjct: 92 GMVDSLFQAPQGTGTHNPVLSSYEYLSQGLRTYNLDNMMDGFYIAPAFMDKIVVHISKNF 151
Query: 56 -----------LCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRER 104
L IWGGKGQGKSFQ EL+F MGI P++MSAGELES AGEP KLIR+R
Sbjct: 152 MSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGISPIMMSAGELESGNAGEPAKLIRQR 211
Query: 105 YRTASQVVQNQGKMSCLMINDIDAGLGRF-GNTQMTVNNQIVVGTLMNLSDNPTRVSIGQ 163
YR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ+V TLMN++DNPT V +
Sbjct: 212 YREAADIIKKKGKMCCLFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPG 271
Query: 164 DWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITK 223
+ + D R+PII TGNDFST+YAPLIRDGRMEKFYW P ED + + +++ D + +
Sbjct: 272 MYNKED-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCIGIFKTDNVPE 330
Query: 224 DEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVFT 283
D++ +V TFP Q++DF+GALR+R YD + KW+ + GVE++G KL+ R+ P F
Sbjct: 331 DDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWVSGV-GVESIGKKLVNSREGP--PTFE 387
Query: 284 PPEKTVEALLESGYSLLREQQLIMETKLSKEYMKN 318
P TVE L E G L++EQ+ + +L+ +Y+ +
Sbjct: 388 QPPMTVEKLFEYGNMLVKEQENVKRVQLADKYLSD 422
>gi|225580059|gb|ACN94267.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase
activase [Solenostemon scutellarioides]
Length = 436
Score = 296 bits (758), Expect = 8e-78, Method: Compositional matrix adjust.
Identities = 155/336 (46%), Positives = 219/336 (65%), Gaps = 32/336 (9%)
Query: 10 GVIDPLF-AGNFLGKDSDIV--FDYRQKVTRSFEYLQGDY---YIAPVFMASLCI----- 58
G++D LF A + +G I+ ++Y + +++++L YIAP FM L +
Sbjct: 87 GMVDSLFQAPSGMGTHDAIMNSYEYISQGQKTYDHLDNTLDGLYIAPAFMDKLVVHLSKN 146
Query: 59 ---------------WGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRE 103
WGGKGQGKSFQ EL+F+ MGI P++MSAGELES AGEP KLIR+
Sbjct: 147 FMTLPNIKVPLILGVWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQ 206
Query: 104 RYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIG 162
RYR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ+V TLMN++DNPT V +
Sbjct: 207 RYREAADLIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLP 265
Query: 163 QDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGIT 222
+ + + R+PII TGNDFST+YAPLIRDGRMEKFYW P ED + + ++ DG+
Sbjct: 266 GMYNKQE-NARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDGVP 324
Query: 223 KDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVF 282
+ V +V TFP Q++DF+GALR+R YD + KW+ + GVEN+G +L+ R+ P F
Sbjct: 325 DEAVVRLVDTFPGQSIDFFGALRARVYDDEVRKWVSGV-GVENIGTRLVNSREGP--PKF 381
Query: 283 TPPEKTVEALLESGYSLLREQQLIMETKLSKEYMKN 318
P+ T+E LLE G+ L++EQ+ + +L+ +Y+K+
Sbjct: 382 EQPKMTLEKLLEYGFMLVQEQENVKRVQLADKYLKD 417
>gi|118489105|gb|ABK96359.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 476
Score = 296 bits (758), Expect = 9e-78, Method: Compositional matrix adjust.
Identities = 157/334 (47%), Positives = 215/334 (64%), Gaps = 32/334 (9%)
Query: 10 GVIDPLF-AGNFLGKDSDIV--FDYRQKVTRSFEY---LQGDYYIAPVFMASLC------ 57
G++D LF A G + I+ ++Y + R++ + G YYIAP FM L
Sbjct: 91 GMVDSLFQAPQGTGTHNPILSSYEYLSQGLRTYNLDNNMDG-YYIAPAFMDKLVVHISKN 149
Query: 58 --------------IWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRE 103
IWGGKGQGKSFQ EL+F MGI P++MSAGELES AGEP KLIR+
Sbjct: 150 FMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQ 209
Query: 104 RYRTASQVVQNQGKMSCLMINDIDAGLGRF-GNTQMTVNNQIVVGTLMNLSDNPTRVSIG 162
RYR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ+V TLMN++DNPT V +
Sbjct: 210 RYREAADIIKKKGKMCCLFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLP 269
Query: 163 QDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGIT 222
+ + D R+PII TGNDFST+YAPLIRDGRMEKFYW P +D + + +++ D I
Sbjct: 270 GMYNKED-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCIGIFKSDKIA 328
Query: 223 KDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVF 282
K+++ +V TFP Q++DF+GALR+R YD + KWI + GV+++G KL+ R P F
Sbjct: 329 KEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGV-GVDSIGKKLVNSRDGP--PTF 385
Query: 283 TPPEKTVEALLESGYSLLREQQLIMETKLSKEYM 316
P+ T+E LLE G L++EQ+ + +L+ +Y+
Sbjct: 386 EQPKMTIEKLLEYGNMLVQEQENVKRVQLADKYL 419
>gi|62733168|gb|AAX95285.1| RuBisCO activase small isoform precursor [Oryza sativa Japonica
Group]
gi|108864711|gb|ABG22612.1| Ribulose bisphosphate carboxylase/oxygenase activase, chloroplast
precursor, putative, expressed [Oryza sativa Japonica
Group]
Length = 357
Score = 296 bits (757), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 148/302 (49%), Positives = 200/302 (66%), Gaps = 26/302 (8%)
Query: 36 TRSFEYLQGDYYIAPVFMASLC--------------------IWGGKGQGKSFQTELIFQ 75
T F+ G +YIAP FM L IWGGKGQGKSFQ EL+F
Sbjct: 36 TYDFDNTMGGFYIAPAFMDKLVVHISKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFA 95
Query: 76 AMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG- 134
MGI P++MSAGELES AGEP KLIR+RYR A+ +++ +GKM CL IND+DAG GR G
Sbjct: 96 KMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGG 154
Query: 135 NTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDG 194
TQ TVNNQ+V TLMN++DNPT V + + + D R+PII TGNDFST+YAPLIRDG
Sbjct: 155 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKED-NPRVPIIVTGNDFSTLYAPLIRDG 213
Query: 195 RMEKFYWQPNLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSIS 254
RMEKFYW P +D + + ++ D + +++ IV +FP Q++DF+GALR+R YD +
Sbjct: 214 RMEKFYWAPTRDDRVGVCKGIFRTDNVPDEDIVKIVDSFPGQSIDFFGALRARVYDDEVR 273
Query: 255 KWIDDIGGVENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKE 314
KW+ D GVEN+G +L+ R+ P F P+ T+E L+E GY L++EQ+ + +L+++
Sbjct: 274 KWVSDT-GVENIGKRLVNSREGP--PEFEQPKMTIEKLMEYGYMLVKEQENVKRVQLAEQ 330
Query: 315 YM 316
Y+
Sbjct: 331 YL 332
>gi|62733297|gb|AAX95414.1| RuBisCO activase small isoform precursor [Oryza sativa Japonica
Group]
Length = 466
Score = 296 bits (757), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 153/333 (45%), Positives = 213/333 (63%), Gaps = 31/333 (9%)
Query: 10 GVIDPLFAGNFLGKDSDIV---FDYRQKVTRSFEY--LQGDYYIAPVFMASLC------- 57
G +D LF + V ++Y + R++++ G +YIAP FM L
Sbjct: 119 GFVDSLFQAPTGDGTHEAVLSSYEYLSQGLRTYDFDNTMGGFYIAPAFMDKLVVHISKNF 178
Query: 58 -------------IWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRER 104
IWGGKGQGKSFQ EL+F MGI P++MSAGELES AGEP KLIR+R
Sbjct: 179 MTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQR 238
Query: 105 YRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIGQ 163
YR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ+V TLMN++DNPT V +
Sbjct: 239 YREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPG 297
Query: 164 DWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITK 223
+ + D R+PII TGNDFST+YAPLIRDGRMEKFYW P +D + + ++ D +
Sbjct: 298 MYNKED-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRVGVCKGIFRTDNVPD 356
Query: 224 DEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVFT 283
+++ IV +FP Q++DF+GALR+R YD + KW+ D GVEN+G +L+ R+ P F
Sbjct: 357 EDIVKIVDSFPGQSIDFFGALRARVYDDEVRKWVSDT-GVENIGKRLVNSREGP--PEFE 413
Query: 284 PPEKTVEALLESGYSLLREQQLIMETKLSKEYM 316
P+ T+E L+E GY L++EQ+ + +L+++Y+
Sbjct: 414 QPKMTIEKLMEYGYMLVKEQENVKRVQLAEQYL 446
>gi|224101023|ref|XP_002312110.1| predicted protein [Populus trichocarpa]
gi|222851930|gb|EEE89477.1| predicted protein [Populus trichocarpa]
Length = 438
Score = 296 bits (757), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 153/335 (45%), Positives = 215/335 (64%), Gaps = 30/335 (8%)
Query: 10 GVIDPLF-AGNFLGKDSDIV--FDYRQKVTRSF--EYLQGDYYIAPVFMAS--------- 55
G++D LF A G + ++ ++Y + R++ + + +YIAP FM
Sbjct: 92 GMVDSLFQAPQGTGTHNPVLSSYEYLSQGLRTYNLDNMMDGFYIAPAFMDKIVVHISKNF 151
Query: 56 -----------LCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRER 104
L IWGGKGQGKSFQ EL+F MGI P++MSAGELES AGEP KLIR+R
Sbjct: 152 MSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGISPIMMSAGELESGNAGEPAKLIRQR 211
Query: 105 YRTASQVVQNQGKMSCLMINDIDAGLGRF-GNTQMTVNNQIVVGTLMNLSDNPTRVSIGQ 163
YR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ+V TLMN++DNPT V +
Sbjct: 212 YREAADIIKKKGKMCCLFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPG 271
Query: 164 DWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITK 223
+ + D R+P+I TGNDFST+YAPLIRDGRMEKFYW P ED + + +++ D + +
Sbjct: 272 MYNKED-NPRVPVIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCIGIFKTDNVPE 330
Query: 224 DEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVFT 283
D++ +V TFP Q++DF+GALR+R YD + KW+ + GVE++G KL+ R+ P F
Sbjct: 331 DDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWVSGV-GVESIGKKLVNSREGP--PTFE 387
Query: 284 PPEKTVEALLESGYSLLREQQLIMETKLSKEYMKN 318
P TVE L E G L++EQ+ + +L+ +Y+ +
Sbjct: 388 QPPMTVEKLFEYGNMLVKEQENVKRVQLADKYLSD 422
>gi|297612474|ref|NP_001068555.2| Os11g0707000 [Oryza sativa Japonica Group]
gi|255680411|dbj|BAF28918.2| Os11g0707000 [Oryza sativa Japonica Group]
Length = 350
Score = 295 bits (756), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 148/302 (49%), Positives = 200/302 (66%), Gaps = 26/302 (8%)
Query: 36 TRSFEYLQGDYYIAPVFMASLC--------------------IWGGKGQGKSFQTELIFQ 75
T F+ G +YIAP FM L IWGGKGQGKSFQ EL+F
Sbjct: 29 TYDFDNTMGGFYIAPAFMDKLVVHISKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFA 88
Query: 76 AMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG- 134
MGI P++MSAGELES AGEP KLIR+RYR A+ +++ +GKM CL IND+DAG GR G
Sbjct: 89 KMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGG 147
Query: 135 NTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDG 194
TQ TVNNQ+V TLMN++DNPT V + + + D R+PII TGNDFST+YAPLIRDG
Sbjct: 148 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKED-NPRVPIIVTGNDFSTLYAPLIRDG 206
Query: 195 RMEKFYWQPNLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSIS 254
RMEKFYW P +D + + ++ D + +++ IV +FP Q++DF+GALR+R YD +
Sbjct: 207 RMEKFYWAPTRDDRVGVCKGIFRTDNVPDEDIVKIVDSFPGQSIDFFGALRARVYDDEVR 266
Query: 255 KWIDDIGGVENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKE 314
KW+ D GVEN+G +L+ R+ P F P+ T+E L+E GY L++EQ+ + +L+++
Sbjct: 267 KWVSDT-GVENIGKRLVNSREGP--PEFEQPKMTIEKLMEYGYMLVKEQENVKRVQLAEQ 323
Query: 315 YM 316
Y+
Sbjct: 324 YL 325
>gi|118486993|gb|ABK95328.1| unknown [Populus trichocarpa]
Length = 361
Score = 295 bits (755), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 153/335 (45%), Positives = 215/335 (64%), Gaps = 30/335 (8%)
Query: 10 GVIDPLF-AGNFLGKDSDIV--FDYRQKVTRSF--EYLQGDYYIAPVFMAS--------- 55
G++D LF A G + ++ ++Y + R++ + + +YIAP FM
Sbjct: 13 GMVDSLFQAPQGTGTHNPVLSSYEYLSQGLRTYNLDNMMDGFYIAPAFMDKIVVHISKNF 72
Query: 56 -----------LCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRER 104
L IWGGKGQGKSFQ EL+F MGI P++MSAGELES AGEP KLIR+R
Sbjct: 73 MSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGISPIMMSAGELESGNAGEPAKLIRQR 132
Query: 105 YRTASQVVQNQGKMSCLMINDIDAGLGRF-GNTQMTVNNQIVVGTLMNLSDNPTRVSIGQ 163
YR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ+V TLMN++DNPT V +
Sbjct: 133 YREAADIIKKKGKMCCLFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPG 192
Query: 164 DWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITK 223
+ + D R+P+I TGNDFST+YAPLIRDGRMEKFYW P ED + + +++ D + +
Sbjct: 193 MYNKED-NPRVPVIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCIGIFKTDNVPE 251
Query: 224 DEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVFT 283
D++ +V TFP Q++DF+GALR+R YD + KW+ + GVE++G KL+ R+ P F
Sbjct: 252 DDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWVSGV-GVESIGKKLVNSREGP--PTFE 308
Query: 284 PPEKTVEALLESGYSLLREQQLIMETKLSKEYMKN 318
P TVE L E G L++EQ+ + +L+ +Y+ +
Sbjct: 309 QPPMTVEKLFEYGNMLVKEQENVKRVQLADKYLSD 343
>gi|303290017|ref|XP_003064296.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226454612|gb|EEH51918.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 505
Score = 295 bits (755), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 173/391 (44%), Positives = 228/391 (58%), Gaps = 71/391 (18%)
Query: 2 NIAVGARAGVIDPLFAGNF-----LGKDSDIV---FDYRQ-KVTRSFEYLQGDYYIAPVF 52
N VGAR G+ID +FAG LG DSDI YR + RSF+ L GD+++ P+F
Sbjct: 115 NTEVGARKGIIDDVFAGTANAKFNLGADSDIASGRLRYRDVEHVRSFKNLFGDFHVPPLF 174
Query: 53 ------------MAS--------------------LCIWGGKGQGKSFQTELIFQAMGIE 80
MA L +WG KG GK+F EL +A+ I
Sbjct: 175 VDKVSLHVAKNLMADSDNPGASANPLGGLTKVPLILGVWGAKGCGKTFNLELACKALDIT 234
Query: 81 PVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTV 140
PV+MSAGELE E AG PG+LIR RYR A+++++N GKMSCL+INDIDAG+GRF TQ TV
Sbjct: 235 PVVMSAGELEDEWAGNPGRLIRSRYRKAAEIIRNHGKMSCLIINDIDAGVGRFKRTQATV 294
Query: 141 NNQIVVGTLMNLSDNPTRVSIGQD-----WRESDITNRIPIIFTGNDFSTIYAPLIRDGR 195
N Q+V+GTLMNL D+PT+VS +D +RE + R+PII TGND ST+YAPL+RDGR
Sbjct: 295 NTQMVMGTLMNLCDHPTQVSNEEDDEIHEYREEERIRRVPIIVTGNDLSTLYAPLLRDGR 354
Query: 196 MEKFYWQPNLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISK 255
MEKFYWQP DI ++VH MY D ++++ V +V Q LDF+GA R+R YDR I +
Sbjct: 355 MEKFYWQPTRTDIADMVHAMYRDDDVSRETVERLVARHEGQPLDFFGATRARMYDRCIVE 414
Query: 256 WI--------DDIGG----VENLGNKLLK----RRKDKEL---------PVFTPPEKTVE 290
W D + G + +G L+K R D E P FT + + E
Sbjct: 415 WAESFRSETPDPVTGQRHVTKAMGEHLMKNRTRERPDDEHDPGDFVLWKPDFTVQDCSEE 474
Query: 291 ALLESGYSLLREQQLIMETKLSKEYMKNIDD 321
AL+ L REQ+L+ E +LS++YM+ + D
Sbjct: 475 ALMRHADDLAREQRLVNEKRLSEDYMRTMKD 505
>gi|242072103|ref|XP_002451328.1| hypothetical protein SORBIDRAFT_05g027870 [Sorghum bicolor]
gi|241937171|gb|EES10316.1| hypothetical protein SORBIDRAFT_05g027870 [Sorghum bicolor]
Length = 440
Score = 293 bits (750), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 155/334 (46%), Positives = 214/334 (64%), Gaps = 33/334 (9%)
Query: 10 GVIDPLFAGNFLGKDSDIV----FDY--RQKVTRSFEYLQGDYYIAPVFMASLC------ 57
G+ID LF +G + + +DY + + T SF+ + +YI+ FM L
Sbjct: 93 GMIDSLFQAP-MGDGTHVAVLSSYDYISQGQKTYSFDNMMDGFYISKSFMDKLVVHLSKN 151
Query: 58 --------------IWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRE 103
IWGGKGQGKSFQ EL+F MGI P++MSAGELES AGEP KLIR+
Sbjct: 152 FMSLPNIKVPLILGIWGGKGQGKSFQCELVFSKMGIIPIMMSAGELESGNAGEPAKLIRQ 211
Query: 104 RYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIG 162
RYR A+ ++ ++GKMSCL IND+DAG GR G TQ TVNNQ+V TLMN++DNPT V +
Sbjct: 212 RYREAADLI-SKGKMSCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLP 270
Query: 163 QDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGIT 222
+ + D R+PII TGNDFST+YAPLIRDGRMEKFYW P ED + + ++ DG+
Sbjct: 271 GMYNKVD-NARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDGVD 329
Query: 223 KDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVF 282
++ V +V TFP Q++DF+GALR+R YD + +W+ + GVEN+ KL+ ++ P F
Sbjct: 330 EEHVVQLVDTFPGQSIDFFGALRARVYDDEVRRWVAET-GVENIAKKLVNSKEGP--PTF 386
Query: 283 TPPEKTVEALLESGYSLLREQQLIMETKLSKEYM 316
P+ T+E LLE G+ L+ EQ+ + +L+ +Y+
Sbjct: 387 EQPKMTIEKLLEYGHMLVAEQENVKRVQLADKYL 420
>gi|162458161|ref|NP_001104921.1| ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic
precursor [Zea mays]
gi|29429152|sp|Q9ZT00.3|RCA_MAIZE RecName: Full=Ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic; Short=RA; Short=RuBisCO activase; Flags:
Precursor
gi|19855034|gb|AAC97932.3| ribulose-1,5-bisphosphate carboxylase/oxygenase activase precursor
[Zea mays]
gi|195620038|gb|ACG31849.1| ribulose bisphosphate carboxylase/oxygenase activase [Zea mays]
gi|313574198|dbj|BAJ41042.1| ribulose-1,5-bisphosphate carboxylase/oxygenase activase small
isoform [Zea mays]
gi|413920136|gb|AFW60068.1| ribulose bisphosphate carboxylase/oxygenase activase, Precursor
isoform 1 [Zea mays]
gi|413920137|gb|AFW60069.1| ribulose bisphosphate carboxylase/oxygenase activase, Precursor
isoform 2 [Zea mays]
Length = 433
Score = 292 bits (747), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 154/334 (46%), Positives = 213/334 (63%), Gaps = 33/334 (9%)
Query: 10 GVIDPLFAGNFLGKDSDIV----FDYRQKVTRSFEY--LQGDYYIAPVFMASLC------ 57
G++D LF +G + + +DY + +S+ + + +YIA FM L
Sbjct: 86 GLVDNLFQAP-MGDGTHVAVLSSYDYISQGQKSYNFDNMMDGFYIAKGFMDKLVVHLSKN 144
Query: 58 --------------IWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRE 103
IWGGKGQGKSFQ EL+F MGI P++MSAGELES AGEP KLIR+
Sbjct: 145 FMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGITPIMMSAGELESGNAGEPAKLIRQ 204
Query: 104 RYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIG 162
RYR AS +++ +GKMSCL IND+DAG GR G TQ TVNNQ+V TLMN++DNPT V +
Sbjct: 205 RYREASDLIK-KGKMSCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLP 263
Query: 163 QDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGIT 222
+ + D R+PII TGNDFST+YAPLIRDGRMEKFYW P ED + + ++ DG+
Sbjct: 264 GMYNKED-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDGVD 322
Query: 223 KDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVF 282
++ V +V TFP Q++DF+GALR+R YD + +W+ + GVEN+ KL+ ++ P F
Sbjct: 323 EEHVVQLVDTFPGQSIDFFGALRARVYDDEVRRWVSET-GVENIARKLVNSKEGP--PTF 379
Query: 283 TPPEKTVEALLESGYSLLREQQLIMETKLSKEYM 316
P+ T+E LLE G+ L+ EQ+ + +L+ +Y+
Sbjct: 380 EQPKITIEKLLEYGHMLVAEQENVKRVQLADKYL 413
>gi|118487547|gb|ABK95600.1| unknown [Populus trichocarpa]
Length = 476
Score = 291 bits (746), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 150/315 (47%), Positives = 204/315 (64%), Gaps = 37/315 (11%)
Query: 35 VTRSFEYL-QG-----------DYYIAPVFMASLCI--------------------WGGK 62
V S+EYL QG +YIAP FM L + WGGK
Sbjct: 109 VLNSYEYLSQGLRTYNLDNNMDGFYIAPAFMDKLVVHISKNFMSLPNIKVPLILGVWGGK 168
Query: 63 GQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLM 122
GQGKSFQ EL+F MGI P++MSAGELES AGEP KLIR+RYR A+ +++ +GKM CL
Sbjct: 169 GQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKKGKMCCLF 228
Query: 123 INDIDAGLGRF-GNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGN 181
IND+DAG GR G TQ TVNNQ+V TLMN++DNPT V + + + + R+PII TGN
Sbjct: 229 INDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEE-NPRVPIIVTGN 287
Query: 182 DFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFY 241
DFST+YAPLIRDGRMEKFYW P +D + + +++ D I K+++ +V TFP Q++DF+
Sbjct: 288 DFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCIGIFKSDKIPKEDIVKLVDTFPGQSIDFF 347
Query: 242 GALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLR 301
GALR+R YD + KW+ + GV+++G KL+ R+ P F P+ T+E LLE G L++
Sbjct: 348 GALRARVYDDEVRKWVSGV-GVDSIGKKLVNSREGP--PTFEQPKMTIEKLLEYGNMLVQ 404
Query: 302 EQQLIMETKLSKEYM 316
EQ+ + +L+ +Y+
Sbjct: 405 EQENVKRVQLADKYL 419
>gi|357155664|ref|XP_003577195.1| PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase A,
chloroplastic-like [Brachypodium distachyon]
Length = 465
Score = 291 bits (745), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 155/334 (46%), Positives = 209/334 (62%), Gaps = 33/334 (9%)
Query: 10 GVIDPLFAGNFLGKDSDIVFDYRQKVTRS-----FEYLQGDYYIAPVFMASLC------- 57
G++D LF V ++ +++ F+ G +YIAP FM L
Sbjct: 81 GIVDSLFQAPMGDGTHVAVLSSQEYISQGLRKYDFDNTMGGFYIAPAFMDKLVVHLSKNF 140
Query: 58 -------------IWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRER 104
IWGGKGQGKSFQ EL+F MGI P++MSAGELES AGEP KLIR+R
Sbjct: 141 MTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQR 200
Query: 105 YRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIGQ 163
YR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ+V TLMN++D PT V +
Sbjct: 201 YREAADLIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAPTNVQLPG 259
Query: 164 DWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITK 223
+ + + R+PII TGNDFST+YAPLIRDGRMEKFYW P ED + + +++ D I+
Sbjct: 260 MYNKEE-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCRGIFQTDNISD 318
Query: 224 DEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPV-F 282
+ V IV TFP Q++DF+GALR+R YD + KW+ G+EN+G KL+ K+ PV F
Sbjct: 319 ESVIKIVDTFPGQSIDFFGALRARVYDDEVRKWVSST-GIENIGKKLV---NSKDGPVSF 374
Query: 283 TPPEKTVEALLESGYSLLREQQLIMETKLSKEYM 316
P+ T+E LLE G+ L++EQ + +L+ +YM
Sbjct: 375 EQPKMTIEKLLEYGHMLVQEQDNVKRVQLADKYM 408
>gi|32481063|gb|AAP83928.1| Rubisco activase beta form precursor [Deschampsia antarctica]
Length = 428
Score = 291 bits (745), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 155/334 (46%), Positives = 208/334 (62%), Gaps = 33/334 (9%)
Query: 10 GVIDPLFAGNFLGKDSDIVFDYRQKVTRS-----FEYLQGDYYIAPVFMASLC------- 57
G++D LF + V + V++ F+ G +YIAP FM L
Sbjct: 81 GIVDSLFQAPMGDGTHEAVLSSYEYVSQGLKKYDFDNTMGGFYIAPAFMDKLVVHLSKNF 140
Query: 58 -------------IWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRER 104
IWGGKGQGKSFQ EL+F MGI P++MSAGELES AGEP KLIR+R
Sbjct: 141 MTLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQR 200
Query: 105 YRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIGQ 163
YR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ+V TLMN++D PT V +
Sbjct: 201 YREAADMIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAPTNVQLPG 259
Query: 164 DWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITK 223
+ + + R+PII TGNDFST+YAPLIRDGRMEKFYW P ED + + +++ D ++
Sbjct: 260 MYNKEE-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFQTDNVSD 318
Query: 224 DEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPV-F 282
+ V IV TFP Q++DF+GALR+R YD + KW+ G+EN+G +L+ R + PV F
Sbjct: 319 ESVVKIVDTFPGQSIDFFGALRARVYDVEVRKWVSST-GIENIGKRLVNSR---DGPVTF 374
Query: 283 TPPEKTVEALLESGYSLLREQQLIMETKLSKEYM 316
P+ TVE LLE G+ L++EQ + +L+ YM
Sbjct: 375 EQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYM 408
>gi|223948607|gb|ACN28387.1| unknown [Zea mays]
Length = 383
Score = 291 bits (744), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 154/334 (46%), Positives = 213/334 (63%), Gaps = 33/334 (9%)
Query: 10 GVIDPLFAGNFLGKDSDIV----FDYRQKVTRSFEY--LQGDYYIAPVFMASLC------ 57
G++D LF +G + + +DY + +S+ + + +YIA FM L
Sbjct: 36 GLVDNLFQAP-MGDGTHVAVLSSYDYISQGQKSYNFDNMMDGFYIAKGFMDKLVVHLSKN 94
Query: 58 --------------IWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRE 103
IWGGKGQGKSFQ EL+F MGI P++MSAGELES AGEP KLIR+
Sbjct: 95 FMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGITPIMMSAGELESGNAGEPAKLIRQ 154
Query: 104 RYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIG 162
RYR AS +++ +GKMSCL IND+DAG GR G TQ TVNNQ+V TLMN++DNPT V +
Sbjct: 155 RYREASDLIK-KGKMSCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLP 213
Query: 163 QDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGIT 222
+ + D R+PII TGNDFST+YAPLIRDGRMEKFYW P ED + + ++ DG+
Sbjct: 214 GMYNKED-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDGVD 272
Query: 223 KDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVF 282
++ V +V TFP Q++DF+GALR+R YD + +W+ + GVEN+ KL+ ++ P F
Sbjct: 273 EEHVVQLVDTFPGQSIDFFGALRARVYDDEVRRWVSET-GVENIARKLVNSKEGP--PTF 329
Query: 283 TPPEKTVEALLESGYSLLREQQLIMETKLSKEYM 316
P+ T+E LLE G+ L+ EQ+ + +L+ +Y+
Sbjct: 330 EQPKITIEKLLEYGHMLVAEQENVKRVQLADKYL 363
>gi|158726716|gb|ABW80752.1| chloroplast ribulose 1,5-bisphosphate carboxylase/oxygenase
activase [Flaveria bidentis]
Length = 438
Score = 291 bits (744), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 155/339 (45%), Positives = 211/339 (62%), Gaps = 44/339 (12%)
Query: 10 GVIDPLFAGNFLGKDSDIVFDYRQKVTRSFEYLQGD-----------YYIAPVFMASLCI 58
G++D LF +DS F V S+EY+ +YIAP FM L +
Sbjct: 89 GMVDSLFQAP---QDSGTHF----AVMSSYEYISTGLRTYLDNNMDGFYIAPAFMDKLVV 141
Query: 59 --------------------WGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPG 98
WGGKGQGKSFQ EL+F MGI P++MSAGELES AGEP
Sbjct: 142 HITKNFMTLPNIKVPLILGVWGGKGQGKSFQCELVFAKMGITPIMMSAGELESGNAGEPA 201
Query: 99 KLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPT 157
KLIR+RYR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ+V TLMN++DNPT
Sbjct: 202 KLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT 260
Query: 158 RVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYE 217
V + + + + R+PII TGNDFST+YAPLIRDGRMEKFYW P +D + + ++
Sbjct: 261 NVQLPGMYNKEE-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCIGIFR 319
Query: 218 KDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDK 277
D + K+++ +V TFP Q++DF+GALR+R YD + KWI ++ GVE +G KL+ R+
Sbjct: 320 TDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWIGEV-GVETIGKKLVNSREGP 378
Query: 278 ELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYM 316
P F P+ T++ LLE GY L++EQ+ + +L+ Y+
Sbjct: 379 --PTFEQPKMTIDKLLEYGYMLVQEQENVKRVQLADTYL 415
>gi|224109480|ref|XP_002315210.1| predicted protein [Populus trichocarpa]
gi|222864250|gb|EEF01381.1| predicted protein [Populus trichocarpa]
Length = 424
Score = 290 bits (743), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 150/315 (47%), Positives = 204/315 (64%), Gaps = 37/315 (11%)
Query: 35 VTRSFEYL-QG-----------DYYIAPVFMASLCI--------------------WGGK 62
V S+EYL QG +YIAP FM L + WGGK
Sbjct: 59 VLNSYEYLSQGLRTYNLDNNMDGFYIAPAFMDKLVVHISKNFMSLPNIKVPLILGVWGGK 118
Query: 63 GQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLM 122
GQGKSFQ EL+F MGI P++MSAGELES AGEP KLIR+RYR A+ +++ +GKM CL
Sbjct: 119 GQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKKGKMCCLF 178
Query: 123 INDIDAGLGRF-GNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGN 181
IND+DAG GR G TQ TVNNQ+V TLMN++DNPT V + + + + R+PII TGN
Sbjct: 179 INDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEE-NPRVPIIVTGN 237
Query: 182 DFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFY 241
DFST+YAPLIRDGRMEKFYW P +D + + +++ D I K+++ +V TFP Q++DF+
Sbjct: 238 DFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCIGIFKSDKIPKEDIVKLVDTFPGQSIDFF 297
Query: 242 GALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLR 301
GALR+R YD + KW+ + GV+++G KL+ R+ P F P+ T+E LLE G L++
Sbjct: 298 GALRARVYDDEVRKWVSGV-GVDSIGKKLVNSREGP--PTFEQPKMTIEKLLEYGNMLVQ 354
Query: 302 EQQLIMETKLSKEYM 316
EQ+ + +L+ +Y+
Sbjct: 355 EQENVKRVQLADKYL 369
>gi|116283512|gb|AAH29790.1| Unknown (protein for MGC:35458) [Homo sapiens]
Length = 427
Score = 290 bits (741), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 154/334 (46%), Positives = 208/334 (62%), Gaps = 33/334 (9%)
Query: 10 GVIDPLFAGNFLGKDSDIVFDYRQKVTRS-----FEYLQGDYYIAPVFMASLC------- 57
G++D LF + V + V++ F+ G +YIAP FM L
Sbjct: 80 GIVDSLFQAPTGDGTHEAVLSSYEYVSQGLKKYDFDNTMGGFYIAPAFMDKLVVHLSKNF 139
Query: 58 -------------IWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRER 104
IWGGKGQGKSFQ EL+F MGI P++MSAGELES AGEP KLIR+R
Sbjct: 140 MTLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQR 199
Query: 105 YRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIGQ 163
YR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ+V TLMN++D PT V +
Sbjct: 200 YREAADMIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAPTNVQLPG 258
Query: 164 DWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITK 223
+ + + R+PI+ TGNDFST+YAPLIRDGRMEKFYW P +D + + +++ D ++
Sbjct: 259 MYNKEE-NPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVSD 317
Query: 224 DEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPV-F 282
+ V IV TFP Q++DF+GALR+R YD + KW+ G+EN+G KL+ R + PV F
Sbjct: 318 ESVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVTST-GIENIGKKLVNSR---DGPVTF 373
Query: 283 TPPEKTVEALLESGYSLLREQQLIMETKLSKEYM 316
P+ TVE LLE G+ L++EQ + +L+ YM
Sbjct: 374 EQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYM 407
>gi|357469233|ref|XP_003604901.1| Ribulose bisphosphate carboxylase/oxygenase activase [Medicago
truncatula]
gi|355505956|gb|AES87098.1| Ribulose bisphosphate carboxylase/oxygenase activase [Medicago
truncatula]
Length = 476
Score = 290 bits (741), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 146/291 (50%), Positives = 194/291 (66%), Gaps = 26/291 (8%)
Query: 47 YIAPVFMASLC--------------------IWGGKGQGKSFQTELIFQAMGIEPVIMSA 86
YIAP FM L IWGGKGQGKSFQ EL+F MGI P++MSA
Sbjct: 134 YIAPAFMDKLVVHITKNFLNLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGISPIMMSA 193
Query: 87 GELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIV 145
GELES AGEP KLIR+RYR AS +++ +GKM CL IND+DAG GR G TQ TVNNQ+V
Sbjct: 194 GELESGNAGEPAKLIRQRYREASDIIR-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMV 252
Query: 146 VGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNL 205
TLMN++DNPT V + + + + R+PII TGNDFST+YAPLIRDGRMEKFYW P
Sbjct: 253 NATLMNIADNPTNVQLPGMYNKEE-NARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTR 311
Query: 206 EDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVEN 265
+D + + ++ DG+ KD++ IV TFP Q++DF+GALR+R YD + WI I GVE+
Sbjct: 312 DDRVGVCQGIFRTDGVPKDDIVKIVDTFPGQSIDFFGALRARVYDDEVRNWISGI-GVES 370
Query: 266 LGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYM 316
+G +L+ ++ P F P+ T++ LLE G L++EQ+ + +L+ +Y+
Sbjct: 371 IGKRLVNSKEGP--PTFEQPKMTIDKLLEYGNMLVQEQENVKRVQLADKYL 419
>gi|21950712|gb|AAM78591.1| rubisco activase [Chenopodium quinoa]
Length = 438
Score = 290 bits (741), Expect = 9e-76, Method: Compositional matrix adjust.
Identities = 151/333 (45%), Positives = 211/333 (63%), Gaps = 31/333 (9%)
Query: 10 GVIDPLF-----AGNFLGKDSDIVFDYRQKVTRSFEYLQGDYYIAPVFMAS--------- 55
G++D LF +G + S + ++ + + + + G++YIAP FM
Sbjct: 91 GMVDSLFQAPMDSGTHVPVQSSLEYESQGLRKYNIDNMLGNFYIAPSFMDKIVVHITKNY 150
Query: 56 -----------LCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRER 104
L IWGGKGQGKSFQ EL+F MGI P++MSAGELES AGEP KLIR+R
Sbjct: 151 LNLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQR 210
Query: 105 YRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIGQ 163
YR A+ ++ +GKM L IND+DAG GR G TQ TVNNQ+V TLMN++DNPT V +
Sbjct: 211 YREAADIIA-KGKMCALFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPG 269
Query: 164 DWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITK 223
+ + + R+PII TGNDFST+YAPLIRDGRMEKFYW P ED + + ++ D + +
Sbjct: 270 MYNKQE-NARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVATGIFRTDNVPE 328
Query: 224 DEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVFT 283
D V +V TFP Q++DF+GALR+R YD + KW+ ++ G++ +G KL+ R PVF
Sbjct: 329 DHVVKLVDTFPGQSIDFFGALRARVYDDEVRKWVSEV-GIDAVGKKLVNSRDGP--PVFE 385
Query: 284 PPEKTVEALLESGYSLLREQQLIMETKLSKEYM 316
P+ T+E LLE G L++EQ+ + +L+ +Y+
Sbjct: 386 QPKMTLEKLLEYGNMLVQEQENVKRVQLADKYL 418
>gi|1778414|gb|AAC28134.1| ribulose-1,5-bisphosphate carboxylase/oxygenase activase [Oryza
sativa Japonica Group]
Length = 432
Score = 290 bits (741), Expect = 9e-76, Method: Compositional matrix adjust.
Identities = 147/302 (48%), Positives = 199/302 (65%), Gaps = 27/302 (8%)
Query: 36 TRSFEYLQGDYYIAPVFMASLC--------------------IWGGKGQGKSFQTELIFQ 75
T F+ G +YIAP FM L IWGGKGQGKSFQ EL+F
Sbjct: 112 TYDFDNTMGGFYIAPSFMDKLVVHISKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFA 171
Query: 76 AMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG- 134
MGI P++MSAGELES GEP KLIR+RYR A+ +++ +GKM CL IND+DAG GR G
Sbjct: 172 KMGINPIMMSAGELESGN-GEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGG 229
Query: 135 NTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDG 194
TQ TVNNQ+V TLMN++DNPT V + + + D R+PII TGNDFST+YAPLIRDG
Sbjct: 230 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKED-NPRVPIIVTGNDFSTLYAPLIRDG 288
Query: 195 RMEKFYWQPNLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSIS 254
RMEKFYW P +D + + ++ D + +++ IV +FP Q++DF+GALR+R YD +
Sbjct: 289 RMEKFYWAPTRDDRVGVCKGIFRTDNVPDEDIVKIVDSFPGQSIDFFGALRARVYDDEVR 348
Query: 255 KWIDDIGGVENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKE 314
KW+ D GVEN+G +L+ R+ P F P+ T+E L+E GY L++EQ+ + +L+++
Sbjct: 349 KWVSDT-GVENIGKRLVNSREGP--PEFEQPKMTIEKLIEYGYMLVKEQENVKRVQLAEQ 405
Query: 315 YM 316
Y+
Sbjct: 406 YL 407
>gi|10720247|sp|O49074.1|RCA_SOLPN RecName: Full=Ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic; Short=RA; Short=RuBisCO activase; Flags:
Precursor
gi|2707330|gb|AAC15236.1| rubisco activase [Solanum pennellii]
Length = 459
Score = 290 bits (741), Expect = 9e-76, Method: Compositional matrix adjust.
Identities = 151/334 (45%), Positives = 209/334 (62%), Gaps = 31/334 (9%)
Query: 10 GVIDPLFAGNFLGKDSDIVFDYRQKVTRSFEYLQGD-----YYIAPVFMASLCI------ 58
G++D LF + + + V+++ + Q D +YIAP FM L +
Sbjct: 89 GLVDSLFQAPTGTGTHHAIMNSYEYVSQALKTYQLDNKLDGFYIAPAFMDKLVVHITKNF 148
Query: 59 --------------WGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRER 104
WGGKGQGKSFQ EL+F+ MGI P++MSAGELES AGEP KLIR+R
Sbjct: 149 LTLPNIKVPLILGVWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQR 208
Query: 105 YRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIGQ 163
YR A+++++ +G M CL IND+DAG GR G TQ TVNNQ+V TLMN++DNPT V +
Sbjct: 209 YREAAEIIR-KGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPG 267
Query: 164 DWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITK 223
+ + + R+PII TGNDFST+YAPLIRDGRMEKFYW P ED + + ++ D + +
Sbjct: 268 MYNKQE-NARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDNVPE 326
Query: 224 DEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVFT 283
+ V IV +FP Q++DF+GALR+R YD + KW+ G+E +G KLL R P F
Sbjct: 327 EAVVKIVDSFPGQSIDFFGALRARVYDDEVRKWVSGT-GIELIGEKLLNSRDGP--PTFE 383
Query: 284 PPEKTVEALLESGYSLLREQQLIMETKLSKEYMK 317
P+ T+E LLE G L++EQ+ + +L++ Y+K
Sbjct: 384 QPKMTLEKLLEYGNMLVQEQENVKRVQLAETYLK 417
>gi|326494300|dbj|BAJ90419.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 427
Score = 289 bits (739), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 153/334 (45%), Positives = 208/334 (62%), Gaps = 33/334 (9%)
Query: 10 GVIDPLFAGNFLGKDSDIVFDYRQKVTRS-----FEYLQGDYYIAPVFMASLC------- 57
G++D LF + V + V++ F+ G +YIAP FM L
Sbjct: 80 GIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPAFMDKLVVHLSKNF 139
Query: 58 -------------IWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRER 104
IWGGKGQGKSFQ EL+F MGI P++MSAGELES AGEP KLIR+R
Sbjct: 140 MTLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQR 199
Query: 105 YRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIGQ 163
YR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ+V TLMN++D PT V +
Sbjct: 200 YREAADMIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAPTNVQLPG 258
Query: 164 DWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITK 223
+ + + R+PI+ TGNDFST+YAPLIRDGRMEKFYW P +D + + +++ D ++
Sbjct: 259 MYNKEE-NPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVSD 317
Query: 224 DEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPV-F 282
+ V IV TFP Q++DF+GALR+R YD + KW+ G+EN+G +L+ R + PV F
Sbjct: 318 ESVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVGST-GIENIGKRLVNSR---DGPVTF 373
Query: 283 TPPEKTVEALLESGYSLLREQQLIMETKLSKEYM 316
P+ TVE LLE G+ L++EQ + +L+ YM
Sbjct: 374 EQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYM 407
>gi|115334981|gb|ABI94078.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase
activase large protein isoform [Acer rubrum]
Length = 474
Score = 288 bits (738), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 154/332 (46%), Positives = 209/332 (62%), Gaps = 30/332 (9%)
Query: 10 GVIDPLF-AGNFLGKDSDIVFDYRQKVTRSFEYLQGD---YYIAPVFMASLC-------- 57
G++D LF A + G ++ Y T YL+ +YIAPVFM L
Sbjct: 91 GLVDSLFQAPSGTGTHYAVMSSYDYISTGLRTYLENSMDGFYIAPVFMGKLVVHITKNFM 150
Query: 58 ------------IWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERY 105
IWGGKGQGKSFQ EL+F MGI P++MSAGELES AGEP KLIR+RY
Sbjct: 151 SLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGITPIMMSAGELESGNAGEPAKLIRQRY 210
Query: 106 RTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIGQD 164
R A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ+V TLMN++DNPT V +
Sbjct: 211 REAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTSVQLPGM 269
Query: 165 WRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITKD 224
+ + + R+PII TGNDFST+YAPLIRDGRMEKFYW P ED + + ++ D + +
Sbjct: 270 YNKEE-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRSDNVADN 328
Query: 225 EVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVFTP 284
E+ +V TFP Q++DF+GALR+R YD + KWI I GV+++G L+ + P F
Sbjct: 329 ELIKLVDTFPGQSIDFFGALRARVYDDEVRKWISGI-GVDSIGKNLVNSKNGP--PTFEQ 385
Query: 285 PEKTVEALLESGYSLLREQQLIMETKLSKEYM 316
P+ T++ LLE G L++EQ+ + +L+ +Y+
Sbjct: 386 PKMTIDKLLEYGNMLVQEQENVKRVQLADKYL 417
>gi|313574196|dbj|BAJ41041.1| ribulose-1,5-bisphosphate carboxylase/oxygenase activase small
isoform [Hordeum vulgare subsp. vulgare]
Length = 427
Score = 288 bits (738), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 153/334 (45%), Positives = 208/334 (62%), Gaps = 33/334 (9%)
Query: 10 GVIDPLFAGNFLGKDSDIVFDYRQKVTRS-----FEYLQGDYYIAPVFMASLC------- 57
G++D LF + V + V++ F+ G +YIAP FM L
Sbjct: 80 GIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPAFMDKLVVHLSKNF 139
Query: 58 -------------IWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRER 104
IWGGKGQGKSFQ EL+F MGI P++MSAGELES AGEP KLIR+R
Sbjct: 140 MTLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQR 199
Query: 105 YRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIGQ 163
YR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ+V TLMN++D PT V +
Sbjct: 200 YREAADMIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAPTNVQLPG 258
Query: 164 DWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITK 223
+ + + R+PI+ TGNDFST+YAPLIRDGRMEKFYW P +D + + +++ D ++
Sbjct: 259 MYNKEE-NPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVSD 317
Query: 224 DEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPV-F 282
+ V IV TFP Q++DF+GALR+R YD + KW+ G+EN+G +L+ R + PV F
Sbjct: 318 ESVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVGST-GIENIGKRLVNSR---DGPVTF 373
Query: 283 TPPEKTVEALLESGYSLLREQQLIMETKLSKEYM 316
P+ TVE LLE G+ L++EQ + +L+ YM
Sbjct: 374 EQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYM 407
>gi|115334979|gb|ABI94077.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase
activase small protein isoform [Acer rubrum]
Length = 437
Score = 288 bits (738), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 154/332 (46%), Positives = 209/332 (62%), Gaps = 30/332 (9%)
Query: 10 GVIDPLF-AGNFLGKDSDIVFDYRQKVTRSFEYLQGD---YYIAPVFMASLC-------- 57
G++D LF A + G ++ Y T YL+ +YIAPVFM L
Sbjct: 91 GLVDSLFQAPSGTGTHYAVMSSYDYISTGLRTYLENSMDGFYIAPVFMGKLVVHITKNFM 150
Query: 58 ------------IWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERY 105
IWGGKGQGKSFQ EL+F MGI P++MSAGELES AGEP KLIR+RY
Sbjct: 151 SLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGITPIMMSAGELESGNAGEPAKLIRQRY 210
Query: 106 RTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIGQD 164
R A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ+V TLMN++DNPT V +
Sbjct: 211 REAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTSVQLPGM 269
Query: 165 WRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITKD 224
+ + + R+PII TGNDFST+YAPLIRDGRMEKFYW P ED + + ++ D + +
Sbjct: 270 YNKEE-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRSDNVADN 328
Query: 225 EVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVFTP 284
E+ +V TFP Q++DF+GALR+R YD + KWI I GV+++G L+ + P F
Sbjct: 329 ELIKLVDTFPGQSIDFFGALRARVYDDEVRKWISGI-GVDSIGKNLVNSKNGP--PTFEQ 385
Query: 285 PEKTVEALLESGYSLLREQQLIMETKLSKEYM 316
P+ T++ LLE G L++EQ+ + +L+ +Y+
Sbjct: 386 PKMTIDKLLEYGNMLVQEQENVKRVQLADKYL 417
>gi|167096|gb|AAA63163.1| ribulose 1,5-bisphosphate carboxylase activase isoform 1 [Hordeum
vulgare subsp. vulgare]
Length = 427
Score = 288 bits (738), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 153/334 (45%), Positives = 208/334 (62%), Gaps = 33/334 (9%)
Query: 10 GVIDPLFAGNFLGKDSDIVFDYRQKVTRS-----FEYLQGDYYIAPVFMASLC------- 57
G++D LF + V + V++ F+ G +YIAP FM L
Sbjct: 80 GIVDSLFQAPTGHGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPAFMDKLVVHLSKNF 139
Query: 58 -------------IWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRER 104
IWGGKGQGKSFQ EL+F MGI P++MSAGELES AGEP KLIR+R
Sbjct: 140 MTLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQR 199
Query: 105 YRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIGQ 163
YR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ+V TLMN++D PT V +
Sbjct: 200 YREAADMIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAPTNVQLPG 258
Query: 164 DWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITK 223
+ + + R+PI+ TGNDFST+YAPLIRDGRMEKFYW P +D + + +++ D ++
Sbjct: 259 MYNKRE-NPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVSD 317
Query: 224 DEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPV-F 282
+ V IV TFP Q++DF+GALR+R YD + KW+ G+EN+G +L+ R + PV F
Sbjct: 318 ESVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVGST-GIENIGKRLVNSR---DGPVTF 373
Query: 283 TPPEKTVEALLESGYSLLREQQLIMETKLSKEYM 316
P+ TVE LLE G+ L++EQ + +L+ YM
Sbjct: 374 EQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYM 407
>gi|12643756|sp|Q40073.1|RCAA_HORVU RecName: Full=Ribulose bisphosphate carboxylase/oxygenase activase
A, chloroplastic; Short=RA A; Short=RuBisCO activase A;
Flags: Precursor
gi|167097|gb|AAA63164.1| ribulose 1,5-bisphosphate carboxylase activase isoform 2 [Hordeum
vulgare subsp. vulgare]
Length = 464
Score = 288 bits (738), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 153/334 (45%), Positives = 208/334 (62%), Gaps = 33/334 (9%)
Query: 10 GVIDPLFAGNFLGKDSDIVFDYRQKVTRS-----FEYLQGDYYIAPVFMASLC------- 57
G++D LF + V + V++ F+ G +YIAP FM L
Sbjct: 80 GIVDSLFQAPTGHGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPAFMDKLVVHLSKNF 139
Query: 58 -------------IWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRER 104
IWGGKGQGKSFQ EL+F MGI P++MSAGELES AGEP KLIR+R
Sbjct: 140 MTLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQR 199
Query: 105 YRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIGQ 163
YR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ+V TLMN++D PT V +
Sbjct: 200 YREAADMIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAPTNVQLPG 258
Query: 164 DWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITK 223
+ + + R+PI+ TGNDFST+YAPLIRDGRMEKFYW P +D + + +++ D ++
Sbjct: 259 MYNKRE-NPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVSD 317
Query: 224 DEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPV-F 282
+ V IV TFP Q++DF+GALR+R YD + KW+ G+EN+G +L+ R + PV F
Sbjct: 318 ESVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVGST-GIENIGKRLVNSR---DGPVTF 373
Query: 283 TPPEKTVEALLESGYSLLREQQLIMETKLSKEYM 316
P+ TVE LLE G+ L++EQ + +L+ YM
Sbjct: 374 EQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYM 407
>gi|308368980|gb|AAG22094.3| ribulose 1,5-bisphosphate carboxylase/oxygenase activase precursor
[Zea mays]
Length = 305
Score = 288 bits (738), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 141/262 (53%), Positives = 188/262 (71%), Gaps = 6/262 (2%)
Query: 56 LCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQ 115
L IWGGKGQGKSFQ EL+F MGI P++MSAGELES AGEP KLIR+RYR AS +++ +
Sbjct: 29 LGIWGGKGQGKSFQCELVFAKMGITPIMMSAGELESGNAGEPAKLIRQRYREASDLIK-K 87
Query: 116 GKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRI 174
GKMSCL IND+DAG GR G TQ TVNNQ+V TLMN++DNPT V + + + D R+
Sbjct: 88 GKMSCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKED-NPRV 146
Query: 175 PIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITKDEVGSIVKTFP 234
PII TGNDFST+YAPLIRDGRMEKFYW P ED + + ++ DG+ ++ V +V TFP
Sbjct: 147 PIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDGVDEEHVVQLVDTFP 206
Query: 235 NQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVFTPPEKTVEALLE 294
Q++DF+GALR+R YD + +W+ + GVEN+ KL+ ++ P F P+ T+E LLE
Sbjct: 207 GQSIDFFGALRARVYDDEVRRWVSET-GVENIARKLVNSKEGP--PTFEQPKITIEKLLE 263
Query: 295 SGYSLLREQQLIMETKLSKEYM 316
G+ L+ EQ+ + +L+ +Y+
Sbjct: 264 YGHMLVAEQENVKRVQLADKYL 285
>gi|255566442|ref|XP_002524206.1| Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplast
precursor, putative [Ricinus communis]
gi|223536483|gb|EEF38130.1| Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplast
precursor, putative [Ricinus communis]
Length = 473
Score = 288 bits (738), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 146/292 (50%), Positives = 194/292 (66%), Gaps = 26/292 (8%)
Query: 46 YYIAPVFMASLC--------------------IWGGKGQGKSFQTELIFQAMGIEPVIMS 85
+YIAP FM L IWGGKGQGKSFQ EL+F MGI P++MS
Sbjct: 130 FYIAPAFMDKLVVHITKNFMTLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 189
Query: 86 AGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQI 144
AGELES AGEP KLIR+RYR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ+
Sbjct: 190 AGELESGNAGEPAKLIRQRYREAADMIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQM 248
Query: 145 VVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPN 204
V TLMN++DNPT V + + + + R+PII TGNDFST+YAPLIRDGRMEKFYW P
Sbjct: 249 VNATLMNIADNPTNVQLPGMYNKEE-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT 307
Query: 205 LEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVE 264
ED + + +++ DG+ ++V +V TFP Q++DF+GALR+R YD + KWI + GVE
Sbjct: 308 REDRIGVCTGIFKTDGVAPEDVVKLVDTFPGQSIDFFGALRARVYDDEVRKWIGGV-GVE 366
Query: 265 NLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYM 316
+G L+ ++ P F P+ T+E LLE G L++EQ+ + +L+ +YM
Sbjct: 367 KIGKSLVNSKEGP--PTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADKYM 416
>gi|359478916|ref|XP_003632187.1| PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase 2,
chloroplastic isoform 2 [Vitis vinifera]
Length = 440
Score = 288 bits (737), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 146/292 (50%), Positives = 193/292 (66%), Gaps = 26/292 (8%)
Query: 46 YYIAPVFMASLC--------------------IWGGKGQGKSFQTELIFQAMGIEPVIMS 85
+YIAP FM L IWGGKGQGKSFQ EL+F MGI P++MS
Sbjct: 131 FYIAPAFMDKLVVHITKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFSKMGINPIMMS 190
Query: 86 AGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQI 144
AGELES AGEP KLIR+RYR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ+
Sbjct: 191 AGELESGNAGEPAKLIRQRYREAADIIR-KGKMCCLFINDLDAGAGRLGGTTQYTVNNQM 249
Query: 145 VVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPN 204
V TLMN++DNPT V + + + + R+PII TGNDFST+YAPLIRDGRMEKFYW PN
Sbjct: 250 VNATLMNIADNPTNVQLPGMYNKEE-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPN 308
Query: 205 LEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVE 264
ED + + ++ D + D++ IV TFP Q++DF+GALR+R YD + KWI + GV+
Sbjct: 309 REDRIGVCKGIFRSDNVPDDDIVKIVDTFPGQSIDFFGALRARVYDDEVRKWISGV-GVD 367
Query: 265 NLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYM 316
+G KL+ ++ P F P+ T+E LLE G L+ EQ+ + +L+ +Y+
Sbjct: 368 FIGKKLVNSKEGP--PTFEQPKMTIEKLLEYGNMLVMEQENVKRVQLADKYL 417
>gi|225434859|ref|XP_002282236.1| PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase 2,
chloroplastic isoform 1 [Vitis vinifera]
gi|297746032|emb|CBI16088.3| unnamed protein product [Vitis vinifera]
Length = 472
Score = 288 bits (737), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 146/292 (50%), Positives = 193/292 (66%), Gaps = 26/292 (8%)
Query: 46 YYIAPVFMASLC--------------------IWGGKGQGKSFQTELIFQAMGIEPVIMS 85
+YIAP FM L IWGGKGQGKSFQ EL+F MGI P++MS
Sbjct: 131 FYIAPAFMDKLVVHITKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFSKMGINPIMMS 190
Query: 86 AGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQI 144
AGELES AGEP KLIR+RYR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ+
Sbjct: 191 AGELESGNAGEPAKLIRQRYREAADIIR-KGKMCCLFINDLDAGAGRLGGTTQYTVNNQM 249
Query: 145 VVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPN 204
V TLMN++DNPT V + + + + R+PII TGNDFST+YAPLIRDGRMEKFYW PN
Sbjct: 250 VNATLMNIADNPTNVQLPGMYNKEE-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPN 308
Query: 205 LEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVE 264
ED + + ++ D + D++ IV TFP Q++DF+GALR+R YD + KWI + GV+
Sbjct: 309 REDRIGVCKGIFRSDNVPDDDIVKIVDTFPGQSIDFFGALRARVYDDEVRKWISGV-GVD 367
Query: 265 NLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYM 316
+G KL+ ++ P F P+ T+E LLE G L+ EQ+ + +L+ +Y+
Sbjct: 368 FIGKKLVNSKEGP--PTFEQPKMTIEKLLEYGNMLVMEQENVKRVQLADKYL 417
>gi|147856329|emb|CAN83893.1| hypothetical protein VITISV_039112 [Vitis vinifera]
Length = 472
Score = 288 bits (737), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 146/292 (50%), Positives = 193/292 (66%), Gaps = 26/292 (8%)
Query: 46 YYIAPVFMASLC--------------------IWGGKGQGKSFQTELIFQAMGIEPVIMS 85
+YIAP FM L IWGGKGQGKSFQ EL+F MGI P++MS
Sbjct: 131 FYIAPAFMDKLVVHITKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFSKMGINPIMMS 190
Query: 86 AGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQI 144
AGELES AGEP KLIR+RYR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ+
Sbjct: 191 AGELESGNAGEPAKLIRQRYREAADIIR-KGKMCCLFINDLDAGAGRLGGTTQYTVNNQM 249
Query: 145 VVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPN 204
V TLMN++DNPT V + + + + R+PII TGNDFST+YAPLIRDGRMEKFYW PN
Sbjct: 250 VNATLMNIADNPTNVQLPGMYNKEE-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPN 308
Query: 205 LEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVE 264
ED + + ++ D + D++ IV TFP Q++DF+GALR+R YD + KWI + GV+
Sbjct: 309 REDRIGVCKGIFRSDNVPDDDIVKIVDTFPGQSIDFFGALRARVYDDEVRKWISGV-GVD 367
Query: 265 NLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYM 316
+G KL+ ++ P F P+ T+E LLE G L+ EQ+ + +L+ +Y+
Sbjct: 368 FIGKKLVNSKEGP--PTFEQPKMTIEKLLEYGNMLVMEQENVKRVQLADKYL 417
>gi|100615|pir||C23703 ribulose-bisphosphate carboxylase activase (EC 6.3.4.-) A short
form precursor - barley
gi|167091|gb|AAA62702.1| ribulose 1,5-bisphosphate carboxylase activase [Hordeum vulgare
subsp. vulgare]
Length = 427
Score = 288 bits (736), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 153/334 (45%), Positives = 207/334 (61%), Gaps = 33/334 (9%)
Query: 10 GVIDPLFAGNFLGKDSDIVFDYRQKVTRS-----FEYLQGDYYIAPVFMASLC------- 57
G++D LF + V + V++ F+ G +YIAP FM L
Sbjct: 80 GIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPAFMDKLVVHLSKNF 139
Query: 58 -------------IWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRER 104
IWGGKGQGKSFQ EL+F MGI P++MSAGELES AGEP KLIR+R
Sbjct: 140 MTLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQR 199
Query: 105 YRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIGQ 163
YR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ+V TLMN++D PT V +
Sbjct: 200 YREAADMIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAPTNVQLPG 258
Query: 164 DWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITK 223
+ + + R+PI+ TGNDFST+YAPLIRDGRMEKFYW P +D + + +++ D +
Sbjct: 259 MYNKRE-NPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVCD 317
Query: 224 DEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPV-F 282
+ V IV TFP Q++DF+GALR+R YD + KW+ G+EN+G +L+ R + PV F
Sbjct: 318 ESVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVGST-GIENIGKRLVNSR---DGPVTF 373
Query: 283 TPPEKTVEALLESGYSLLREQQLIMETKLSKEYM 316
P+ TVE LLE G+ L++EQ + +L+ YM
Sbjct: 374 EQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYM 407
>gi|357492323|ref|XP_003616450.1| Ribulose-1 5-bisphosphate carboxylase/oxygenase activase [Medicago
truncatula]
gi|355517785|gb|AES99408.1| Ribulose-1 5-bisphosphate carboxylase/oxygenase activase [Medicago
truncatula]
Length = 476
Score = 288 bits (736), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 145/293 (49%), Positives = 195/293 (66%), Gaps = 26/293 (8%)
Query: 46 YYIAPVFMASLC--------------------IWGGKGQGKSFQTELIFQAMGIEPVIMS 85
+YIAP FM L IWGGKGQGKSFQ EL+F MGI P++MS
Sbjct: 132 FYIAPAFMDKLVVHITKNFLTLPNIKVPLILGIWGGKGQGKSFQAELVFAKMGINPIMMS 191
Query: 86 AGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQI 144
AGELES AGEP KLIR+RYR AS +++ +GKM CL IND+DAG GR G TQ TVNNQ+
Sbjct: 192 AGELESGNAGEPAKLIRQRYREASDIIR-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQM 250
Query: 145 VVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPN 204
V TLMN++DNPT V + + + + R+PII TGNDFST+YAPLIRDGRMEKFYW P
Sbjct: 251 VNATLMNIADNPTNVQLPGMYNKEE-NARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT 309
Query: 205 LEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVE 264
ED + + ++ D + +++V IV TFP Q++DF+GALR+R YD + KWI + G+E
Sbjct: 310 REDRIGVCKGIFRHDNVPEEDVVKIVDTFPGQSIDFFGALRARVYDDEVRKWIAGV-GIE 368
Query: 265 NLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYMK 317
+G KL+ ++ P F P+ ++E LLE G L++EQ+ + +L+ +Y++
Sbjct: 369 TIGKKLVNSKEGP--PTFDQPKMSLEKLLEYGNMLVQEQENVKRVQLADKYLE 419
>gi|242072105|ref|XP_002451329.1| hypothetical protein SORBIDRAFT_05g027880 [Sorghum bicolor]
gi|241937172|gb|EES10317.1| hypothetical protein SORBIDRAFT_05g027880 [Sorghum bicolor]
Length = 473
Score = 288 bits (736), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 151/332 (45%), Positives = 208/332 (62%), Gaps = 32/332 (9%)
Query: 10 GVIDPLFAGNFLGKDSDIV----FDYRQKVTRSFEYLQGDYYIAPVFMASLC-------- 57
G+ID LF +G + + +DY + R + + G YYIAP FM L
Sbjct: 98 GMIDSLFQAP-MGDGTHVAVLSSYDYISQGLRQYNTMDG-YYIAPAFMDKLVLHIAKNFM 155
Query: 58 ------------IWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERY 105
IWGGKGQGKSFQ EL+F MGI P++MSAGELES AGEP KLIR+RY
Sbjct: 156 TLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIVMSAGELESGNAGEPAKLIRQRY 215
Query: 106 RTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIGQD 164
R A+ ++ ++GKMSCL IND+DAG GR G TQ TVNNQ+V TLMN++DNPT V +
Sbjct: 216 REAADLI-SKGKMSCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGM 274
Query: 165 WRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITKD 224
+ + D R+PII TGNDFST+YAPLIRDGRM+KFYW P +D + + ++ DG+ +
Sbjct: 275 YSKVD-NPRVPIIVTGNDFSTLYAPLIRDGRMDKFYWAPTRDDRIGVCKGIFRTDGVPDE 333
Query: 225 EVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVFTP 284
V +V FP Q++DF+GALR+R YD + +W+ + GVEN+ +L+ ++ P F
Sbjct: 334 HVVQLVDAFPGQSIDFFGALRARVYDDEVRRWVAET-GVENIARRLVNSKEAP--PTFEQ 390
Query: 285 PEKTVEALLESGYSLLREQQLIMETKLSKEYM 316
P T++ L+E G L EQ+ + +L+ +Y+
Sbjct: 391 PRMTLDKLMEYGRMLEEEQENVKRVQLADKYL 422
>gi|449450762|ref|XP_004143131.1| PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic-like [Cucumis sativus]
gi|449496654|ref|XP_004160190.1| PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic-like [Cucumis sativus]
gi|239837354|gb|ACS29559.1| chloroplast rubisco activase [Cucumis sativus]
Length = 611
Score = 287 bits (735), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 152/333 (45%), Positives = 205/333 (61%), Gaps = 31/333 (9%)
Query: 10 GVIDPLFAGNFLGKDSDIV---FDYRQKVTRSFEYLQG--DYYIAPVFMASLCI------ 58
G+ DPLF + V ++Y R + Y +YIAP FM L +
Sbjct: 87 GLADPLFQAPMGTGTHNAVLSSYEYISAGLRDYSYDNNVDGFYIAPAFMDKLTVHIVKNF 146
Query: 59 --------------WGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRER 104
WGGKGQGKSFQ EL+F MGI P++MSAGELES AGEP KLIR+R
Sbjct: 147 LTLPNIKVPLILGVWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQR 206
Query: 105 YRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIGQ 163
YR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ+V TLMN++DNPT V +
Sbjct: 207 YREAADIIK-KGKMCCLFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPG 265
Query: 164 DWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITK 223
+ + + R+PII TGNDFST+YAPLIRDGRM+KFYW P ED + I ++ DG+
Sbjct: 266 MYNKEE-NPRVPIIVTGNDFSTLYAPLIRDGRMDKFYWAPTREDRIGICTGIFRTDGVPF 324
Query: 224 DEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVFT 283
+++ +V TFP Q++DF+GALR+R YD + KW + GVE +G L+ ++ P F
Sbjct: 325 EDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWAVGV-GVERIGRNLVNSKESP--PTFD 381
Query: 284 PPEKTVEALLESGYSLLREQQLIMETKLSKEYM 316
P+ T+E LLE G L+ EQ+ + KL+ +Y+
Sbjct: 382 QPKMTIEKLLEYGNMLVMEQENVKRVKLADKYL 414
>gi|116787538|gb|ABK24548.1| unknown [Picea sitchensis]
Length = 480
Score = 287 bits (735), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 152/333 (45%), Positives = 206/333 (61%), Gaps = 31/333 (9%)
Query: 10 GVIDPLFAGNFLGKDSDIV---FDYRQKVTRSFEY--LQGDYYIAPVFMASLC------- 57
G +D LF ++V +DY R++++ YYIAP FM L
Sbjct: 93 GKVDSLFQAPMGSGTHNVVMSTYDYISTAQRTYDFDNTMDGYYIAPSFMDKLLVHISKNF 152
Query: 58 -------------IWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRER 104
IWGGKGQGKSFQ EL+F +GI P++MSAGELES AGEP KL+R+R
Sbjct: 153 MNLPNIKVPLILGIWGGKGQGKSFQCELVFAKLGINPIMMSAGELESGDAGEPAKLLRKR 212
Query: 105 YRTASQVVQNQGKMSCLMINDIDAGLGRFGNT-QMTVNNQIVVGTLMNLSDNPTRVSIGQ 163
YR AS +V+ +GKM L IND+DAG GR G+T Q TVNNQ+V TLMN++DNPT V +
Sbjct: 213 YREASDIVK-KGKMCVLFINDLDAGAGRMGSTTQYTVNNQMVNATLMNIADNPTNVQLPG 271
Query: 164 DWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITK 223
+ + D R+PI+ TGNDFST+YAPLIRDGRMEKFYW P +D + + ++ D +
Sbjct: 272 MYNKQD-NPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCQGIFRADNVHP 330
Query: 224 DEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVFT 283
D+V +V TFP Q++DF+GALR+R YD + KW+ G++N+G KL+ ++ P F
Sbjct: 331 DDVVRLVDTFPGQSIDFFGALRARVYDDEVRKWVAGT-GIQNIGKKLINSKEGP--PTFE 387
Query: 284 PPEKTVEALLESGYSLLREQQLIMETKLSKEYM 316
P T+E LLE G L+ EQ + +L+ +YM
Sbjct: 388 KPAMTIEKLLEYGNMLVGEQDNVKRVQLADKYM 420
>gi|116789461|gb|ABK25255.1| unknown [Picea sitchensis]
Length = 440
Score = 287 bits (734), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 152/333 (45%), Positives = 206/333 (61%), Gaps = 31/333 (9%)
Query: 10 GVIDPLFAGNFLGKDSDIV---FDYRQKVTRSFEY--LQGDYYIAPVFMASLC------- 57
G +D LF ++V +DY R++++ YYIAP FM L
Sbjct: 93 GKVDSLFQAPMGSGTHNVVMSTYDYISTAQRTYDFDNTMDGYYIAPSFMDKLLVHISKNF 152
Query: 58 -------------IWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRER 104
IWGGKGQGKSFQ EL+F +GI P++MSAGELES AGEP KL+R+R
Sbjct: 153 MNLPNIKVPLILGIWGGKGQGKSFQCELVFAKLGINPIMMSAGELESGDAGEPAKLLRKR 212
Query: 105 YRTASQVVQNQGKMSCLMINDIDAGLGRFGNT-QMTVNNQIVVGTLMNLSDNPTRVSIGQ 163
YR AS +V+ +GKM L IND+DAG GR G+T Q TVNNQ+V TLMN++DNPT V +
Sbjct: 213 YREASDIVK-KGKMCVLFINDLDAGAGRMGSTTQYTVNNQMVNATLMNIADNPTNVQLPG 271
Query: 164 DWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITK 223
+ + D R+PI+ TGNDFST+YAPLIRDGRMEKFYW P +D + + ++ D +
Sbjct: 272 MYNKQD-NPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCQGIFRADNVHP 330
Query: 224 DEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVFT 283
D+V +V TFP Q++DF+GALR+R YD + KW+ G++N+G KL+ ++ P F
Sbjct: 331 DDVVRLVDTFPGQSIDFFGALRARVYDDEVRKWVAGT-GIQNIGKKLINSKEGP--PTFE 387
Query: 284 PPEKTVEALLESGYSLLREQQLIMETKLSKEYM 316
P T+E LLE G L+ EQ + +L+ +YM
Sbjct: 388 KPAMTIEKLLEYGNMLVGEQDNVKRVQLADKYM 420
>gi|255584538|ref|XP_002532996.1| Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplast
precursor, putative [Ricinus communis]
gi|223527225|gb|EEF29388.1| Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplast
precursor, putative [Ricinus communis]
Length = 474
Score = 287 bits (734), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 144/293 (49%), Positives = 195/293 (66%), Gaps = 26/293 (8%)
Query: 46 YYIAPVFMAS--------------------LCIWGGKGQGKSFQTELIFQAMGIEPVIMS 85
+YIAP FM L IWGGKGQGKSFQ EL+F MGI P++MS
Sbjct: 131 FYIAPAFMDKVVVHITKNFLNLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 190
Query: 86 AGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQI 144
AGELES AGEP KLIR+RYR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ+
Sbjct: 191 AGELESGNAGEPAKLIRQRYREAADIIR-KGKMCCLFINDLDAGAGRLGGTTQYTVNNQM 249
Query: 145 VVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPN 204
V TLMN++DNPT V + + + + R+PII TGNDFST+YAPLIRDGRMEKFYW P
Sbjct: 250 VNATLMNIADNPTNVQLPGMYNKEE-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT 308
Query: 205 LEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVE 264
ED + + ++ D + K+++ +V TFP Q++DF+GA+R+R YD + WI I GVE
Sbjct: 309 REDRIGVCTGIFRTDNVPKEDIVKLVDTFPGQSIDFFGAIRARVYDDEVRAWISTI-GVE 367
Query: 265 NLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYMK 317
N+G +L+ ++ P F P+ T++ LLE G L++EQ+ + +L+ +Y+K
Sbjct: 368 NVGKRLVNSKEAP--PTFEQPKMTLDKLLEYGSMLVKEQENVKRVQLADKYLK 418
>gi|100614|pir||B23703 ribulose-bisphosphate carboxylase activase (EC 6.3.4.-) A long form
precursor - barley (fragment)
gi|167089|gb|AAA62701.1| ribulose 1,5-bisphosphate carboxylase activase, partial [Hordeum
vulgare subsp. vulgare]
Length = 426
Score = 287 bits (734), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 153/334 (45%), Positives = 207/334 (61%), Gaps = 33/334 (9%)
Query: 10 GVIDPLFAGNFLGKDSDIVFDYRQKVTRS-----FEYLQGDYYIAPVFMASLC------- 57
G++D LF + V + V++ F+ G +YIAP FM L
Sbjct: 42 GIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPAFMDKLVVHLSKNF 101
Query: 58 -------------IWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRER 104
IWGGKGQGKSFQ EL+F MGI P++MSAGELES AGEP KLIR+R
Sbjct: 102 MTLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQR 161
Query: 105 YRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIGQ 163
YR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ+V TLMN++D PT V +
Sbjct: 162 YREAADMIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAPTNVQLPG 220
Query: 164 DWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITK 223
+ + + R+PI+ TGNDFST+YAPLIRDGRMEKFYW P +D + + +++ D +
Sbjct: 221 MYNKRE-NPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVCD 279
Query: 224 DEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPV-F 282
+ V IV TFP Q++DF+GALR+R YD + KW+ G+EN+G +L+ R + PV F
Sbjct: 280 ESVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVGST-GIENIGKRLVNSR---DGPVTF 335
Query: 283 TPPEKTVEALLESGYSLLREQQLIMETKLSKEYM 316
P+ TVE LLE G+ L++EQ + +L+ YM
Sbjct: 336 EQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYM 369
>gi|168047151|ref|XP_001776035.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162672693|gb|EDQ59227.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 445
Score = 286 bits (733), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 153/336 (45%), Positives = 210/336 (62%), Gaps = 33/336 (9%)
Query: 10 GVIDPLFAGNFLGKDSDIV----FDYRQKVTRSFEY--LQGDYYIAPVFMASLCI----- 58
G++D LF G +G + +V +DY R++ + ++ YIAP FM L I
Sbjct: 90 GMVDALFQG-AVGLGTQVVTMSSWDYVSTGQRTYNFDNMKDGLYIAPAFMDKLIIHIAKN 148
Query: 59 ---------------WGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRE 103
WGGKGQGKSFQ EL+ +GI P++MSAGELES AGEP KLIR+
Sbjct: 149 FMNLPGIKVPLILGIWGGKGQGKSFQCELVMAKLGINPIVMSAGELESGNAGEPAKLIRQ 208
Query: 104 RYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIG 162
RYR A+ V++ +GKM L IND+DAG GR G TQ TVNNQ+V TLMN++D+PT V +
Sbjct: 209 RYREAADVIK-KGKMCALFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADSPTNVQLP 267
Query: 163 QDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGIT 222
+ + +I R+PII TGNDFST+YAPLIRDGRMEKFYW P ED + + ++ D ++
Sbjct: 268 GVYNKEEIP-RVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRLDNVS 326
Query: 223 KDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVF 282
D V +V FP Q++DF+GALR+R YD + KWI GVEN+G L+ + P F
Sbjct: 327 DDNVTKLVDQFPGQSIDFFGALRARVYDDEVRKWIAGT-GVENIGKNLVNSKNGP--PTF 383
Query: 283 TPPEKTVEALLESGYSLLREQQLIMETKLSKEYMKN 318
P T+E L+E G L++EQQ + +L+++Y+ +
Sbjct: 384 EKPAMTIEKLMEYGEMLVQEQQNVKRVQLAEQYLSS 419
>gi|12643998|sp|P10871.2|RCA_SPIOL RecName: Full=Ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic; Short=RA; Short=RuBisCO activase; Flags:
Precursor
gi|4261546|gb|AAD13840.1|S45033_1 ribulosebisphosphate carboxylase/oxygenase activase [Spinacia
oleracea]
Length = 472
Score = 286 bits (733), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 151/337 (44%), Positives = 211/337 (62%), Gaps = 35/337 (10%)
Query: 10 GVIDPLF-----AGNFLGKDSDIVFDYRQKVTRSFEY--LQGDYYIAPVFMASLCI---- 58
G++D LF AG + S F+Y + R ++ + GD+YIAP FM L +
Sbjct: 88 GMVDSLFQAPADAGTHVPIQSS--FEYESQGLRKYDIDNMLGDFYIAPAFMDKLVVHITK 145
Query: 59 ----------------WGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIR 102
WGGKGQGKSFQ EL+F +GI P++MSAGELES AGEP KLIR
Sbjct: 146 NFLNLPNIKIPLILGVWGGKGQGKSFQCELVFAKLGINPIMMSAGELESGNAGEPAKLIR 205
Query: 103 ERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSI 161
+RYR A+ ++ +GKM L IND++ G GR G TQ TVNNQ+V TLMN++DNPT V +
Sbjct: 206 QRYREAADLIA-KGKMCALFINDLEPGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQL 264
Query: 162 GQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGI 221
+ + D R+PII TGNDFST+YAPLIRDGRMEKFYW P ED + + +++ D +
Sbjct: 265 PGMYNKQD-NARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCTGIFKTDKV 323
Query: 222 TKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPV 281
+ V +V FP Q++DF+GALR+R Y + KW++ + GV+N+G KL+ + PV
Sbjct: 324 PAEHVVKLVDAFPGQSIDFFGALRARVYHDEVRKWVNSV-GVDNVGKKLVNSKDGP--PV 380
Query: 282 FTPPEKTVEALLESGYSLLREQQLIMETKLSKEYMKN 318
F PE T++ L+E G L++EQ+ + +L+ +YM +
Sbjct: 381 FEQPEMTLQKLMEYGNMLVQEQENVKRVQLADQYMSS 417
>gi|168054092|ref|XP_001779467.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669152|gb|EDQ55745.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 410
Score = 286 bits (733), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 153/336 (45%), Positives = 211/336 (62%), Gaps = 33/336 (9%)
Query: 10 GVIDPLFAGNFLGKDSDIV----FDYRQKVTRSFEY--LQGDYYIAPVFMASLCI----- 58
G++D LF G +G + +V +DY R++ + ++ YIAP FM L I
Sbjct: 55 GMVDALFQG-AVGLGTQVVTMSSWDYVSTGQRTYNFDNMKDGLYIAPAFMDKLIIHIAKN 113
Query: 59 ---------------WGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRE 103
WGGKGQGKSFQ EL+ +GI P++MSAGELES AGEP KLIR+
Sbjct: 114 FMNLPGIKVPLILGVWGGKGQGKSFQCELVMSKLGINPIVMSAGELESGNAGEPAKLIRQ 173
Query: 104 RYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIG 162
RYR A+ V++ +GKM L IND+DAG GR G TQ TVNNQ+V TLMN++D+PT V +
Sbjct: 174 RYREAADVIK-KGKMCALFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADSPTNVQLP 232
Query: 163 QDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGIT 222
+ + +I R+PII TGNDFST+YAPLIRDGRMEKFYW P ED + + ++ D ++
Sbjct: 233 GVYNKEEIP-RVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRLDNVS 291
Query: 223 KDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVF 282
D V +V +FP Q++DF+GALR+R YD + KWI GV+N+G KL+ + P F
Sbjct: 292 DDNVTKLVDSFPGQSIDFFGALRARVYDDEVRKWISAT-GVDNIGKKLVNSKDGP--PTF 348
Query: 283 TPPEKTVEALLESGYSLLREQQLIMETKLSKEYMKN 318
P T+E L+E G L++EQQ + +L+ +Y+ +
Sbjct: 349 EKPAMTIEKLMEYGNMLVQEQQNVKRVQLADQYLSS 384
>gi|4261547|gb|AAD13841.1|S45033_11 rubisco activase [Spinacia oleracea]
Length = 435
Score = 286 bits (733), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 151/337 (44%), Positives = 211/337 (62%), Gaps = 35/337 (10%)
Query: 10 GVIDPLF-----AGNFLGKDSDIVFDYRQKVTRSFEY--LQGDYYIAPVFMASLCI---- 58
G++D LF AG + S F+Y + R ++ + GD+YIAP FM L +
Sbjct: 88 GMVDSLFQAPADAGTHVPIQSS--FEYESQGLRKYDIDNMLGDFYIAPAFMDKLVVHITK 145
Query: 59 ----------------WGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIR 102
WGGKGQGKSFQ EL+F +GI P++MSAGELES AGEP KLIR
Sbjct: 146 NFLNLPNIKIPLILGVWGGKGQGKSFQCELVFAKLGINPIMMSAGELESGNAGEPAKLIR 205
Query: 103 ERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSI 161
+RYR A+ ++ +GKM L IND++ G GR G TQ TVNNQ+V TLMN++DNPT V +
Sbjct: 206 QRYREAADLIA-KGKMCALFINDLEPGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQL 264
Query: 162 GQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGI 221
+ + D R+PII TGNDFST+YAPLIRDGRMEKFYW P ED + + +++ D +
Sbjct: 265 PGMYNKQD-NARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCTGIFKTDKV 323
Query: 222 TKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPV 281
+ V +V FP Q++DF+GALR+R Y + KW++ + GV+N+G KL+ + PV
Sbjct: 324 PAEHVVKLVDAFPGQSIDFFGALRARVYHDEVRKWVNSV-GVDNVGKKLVNSKDGP--PV 380
Query: 282 FTPPEKTVEALLESGYSLLREQQLIMETKLSKEYMKN 318
F PE T++ L+E G L++EQ+ + +L+ +YM +
Sbjct: 381 FEQPEMTLQKLMEYGNMLVQEQENVKRVQLADQYMSS 417
>gi|167999775|ref|XP_001752592.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162696123|gb|EDQ82463.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 477
Score = 286 bits (732), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 153/335 (45%), Positives = 211/335 (62%), Gaps = 31/335 (9%)
Query: 10 GVIDPLFAG-NFLGKDSDIV--FDY--RQKVTRSFEYLQGDYYIAPVFMASLCI------ 58
G++D LF G +G + ++ +DY + + T S + ++ YIAP FM L I
Sbjct: 89 GLVDALFQGPQGMGTQNAVLSSWDYISQGQRTYSMDNIKDGLYIAPAFMDKLVIHIAKNF 148
Query: 59 --------------WGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRER 104
WGGKGQGKSFQ EL+ +GI P++MSAGELES AGEP KLIR+R
Sbjct: 149 MDLPGIKVPLILGIWGGKGQGKSFQCELVMSKLGINPIVMSAGELESGNAGEPAKLIRQR 208
Query: 105 YRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIGQ 163
YR A+ +++ +GKM L IND+DAG GR G TQ TVNNQ+V TLMN++DNPT V +
Sbjct: 209 YREAADIIK-KGKMCALFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPG 267
Query: 164 DWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITK 223
+ + I R+PII TGNDFST+YAPLIRDGRMEKFYW P ED + + ++ D +
Sbjct: 268 VYNKETIP-RVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRLDNVHD 326
Query: 224 DEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVFT 283
D+V +V FP Q++DF+GALR+R YD + KWI + G+EN+G L+ + P F
Sbjct: 327 DDVVKLVDKFPGQSIDFFGALRARVYDDEVRKWIGKV-GIENIGRNLVNSKDGP--PTFQ 383
Query: 284 PPEKTVEALLESGYSLLREQQLIMETKLSKEYMKN 318
P T+E L+E G L++EQQ + +L++EY+ +
Sbjct: 384 KPAMTIEKLMEYGDMLVQEQQNVKRVQLAEEYLSS 418
>gi|359481752|ref|XP_002270571.2| PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase 1,
chloroplastic-like [Vitis vinifera]
gi|297740331|emb|CBI30513.3| unnamed protein product [Vitis vinifera]
Length = 474
Score = 286 bits (732), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 144/292 (49%), Positives = 194/292 (66%), Gaps = 26/292 (8%)
Query: 46 YYIAPVFMASLC--------------------IWGGKGQGKSFQTELIFQAMGIEPVIMS 85
+YIAP FM L IWGGKGQGKSFQ EL+F MGI P++MS
Sbjct: 131 FYIAPAFMDKLVVHITKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 190
Query: 86 AGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQI 144
AGELES AGEP KLIR+RYR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ+
Sbjct: 191 AGELESGNAGEPAKLIRQRYREAADIIR-KGKMCCLFINDLDAGAGRLGGTTQYTVNNQM 249
Query: 145 VVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPN 204
V TLMN++DNPT V + + + + R+PII TGNDFST+YAPLIRDGRMEKFYW P
Sbjct: 250 VNATLMNIADNPTNVQLPGMYNKEE-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT 308
Query: 205 LEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVE 264
ED + + ++ D I K+++ +V TFP Q++DF+GALR+R YD + KW+ + GVE
Sbjct: 309 REDRIGVCTGIFRSDNIPKEDMVKLVDTFPGQSIDFFGALRARVYDDEVRKWVASV-GVE 367
Query: 265 NLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYM 316
+G KL+ ++ P F P+ T++ LLE G L++EQ+ + +L+ +Y+
Sbjct: 368 GIGKKLVNSKEGP--PTFEKPKMTLDKLLEYGNMLVQEQENVKRVQLADKYL 417
>gi|449459892|ref|XP_004147680.1| PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase 1,
chloroplastic-like [Cucumis sativus]
Length = 443
Score = 286 bits (732), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 148/316 (46%), Positives = 200/316 (63%), Gaps = 39/316 (12%)
Query: 35 VTRSFEYLQ-------------GDYYIAPVFMASLCI--------------------WGG 61
V S+EYL G YIAP FM L + WGG
Sbjct: 115 VMSSYEYLSQGRKSYDGMDNVLGGLYIAPAFMDKLVVHITKNFLSLPNIKVPLILGLWGG 174
Query: 62 KGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCL 121
KGQGKSFQ EL+F MGI P++MSAGELES AGEP KLIR+RYR A+ +++ +GKMSCL
Sbjct: 175 KGQGKSFQCELVFAKMGITPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMSCL 233
Query: 122 MINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTG 180
IND+DAG GR G TQ TVNNQ+V TLMN++DNPT V + + + + R+PII TG
Sbjct: 234 FINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEE-NPRVPIIVTG 292
Query: 181 NDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDF 240
NDFST+YAPLIRDGRMEKFYW P ED + + ++ D + D++ +V TFP Q++DF
Sbjct: 293 NDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDNVADDDIVKLVDTFPGQSIDF 352
Query: 241 YGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLL 300
+GALR+R YD + KW+ + GV+++G KL+ ++ P F P ++E LLE G L+
Sbjct: 353 FGALRARVYDDEVRKWVTGV-GVQSIGKKLVNSKEPP--PKFEQPTMSLEKLLEYGGMLV 409
Query: 301 REQQLIMETKLSKEYM 316
+EQ+ + +L++ Y+
Sbjct: 410 QEQENVKRVQLAETYL 425
>gi|170129|gb|AAA34038.1| rubisco activase precursor [Spinacia oleracea]
Length = 472
Score = 286 bits (732), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 151/337 (44%), Positives = 211/337 (62%), Gaps = 35/337 (10%)
Query: 10 GVIDPLF-----AGNFLGKDSDIVFDYRQKVTRSFEY--LQGDYYIAPVFMASLCI---- 58
G++D LF AG + S F+Y + R ++ + GD YIAP FM L +
Sbjct: 88 GMVDSLFQAPADAGTHVPIQSS--FEYESQGLRKYDIDNMLGDLYIAPAFMDKLVVHITK 145
Query: 59 ----------------WGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIR 102
WGGKGQGKSFQ EL+F +GI P++MSAGELES AGEP KLIR
Sbjct: 146 NFLNLPNIKIPLILGVWGGKGQGKSFQCELVFAKLGINPIMMSAGELESGNAGEPAKLIR 205
Query: 103 ERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSI 161
+RYR A+ ++ +GKM L IND++ G GR G TQ TVNNQ+V TL+N++DNPT V +
Sbjct: 206 QRYREAADLIA-KGKMCALFINDLEPGAGRMGGTTQYTVNNQMVNATLLNIADNPTNVQL 264
Query: 162 GQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGI 221
+ + D R+PII TGNDFST+YAPLIRDGRMEKFYW P ED + + +++ D +
Sbjct: 265 PGMYNKQD-NARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCTGIFKTDKV 323
Query: 222 TKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPV 281
+ V +V FP Q++DF+GALR+R YD + KW++ + GV+N+G KL+ + PV
Sbjct: 324 PAEHVVKLVDAFPGQSIDFFGALRARVYDDEVRKWVNSV-GVDNVGKKLVNSKDGP--PV 380
Query: 282 FTPPEKTVEALLESGYSLLREQQLIMETKLSKEYMKN 318
F PE T++ L+E G L++EQ+ + +L+ +YM +
Sbjct: 381 FEQPEMTLQKLMEYGNMLVQEQENVKRVQLADQYMSS 417
>gi|32481061|gb|AAP83927.1| Rubisco activase alpha form precursor [Deschampsia antarctica]
Length = 465
Score = 286 bits (732), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 153/334 (45%), Positives = 206/334 (61%), Gaps = 33/334 (9%)
Query: 10 GVIDPLFAGNFLGKDSDIVFDYRQKVTRS-----FEYLQGDYYIAPVFMASLC------- 57
G++D LF + V + V++ F+ G +YIAP FM L
Sbjct: 81 GIVDSLFQAPMGDGTHEAVLSSYEYVSQGLKKYDFDNTMGGFYIAPAFMDKLVVHLSKNF 140
Query: 58 -------------IWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRER 104
IWGGKGQGKSFQ EL+F MGI P++MSAGELES AGEP KLIR+R
Sbjct: 141 MTLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQR 200
Query: 105 YRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIGQ 163
YR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ+V TLMN++D PT V +
Sbjct: 201 YREAADMIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAPTNVQLPG 259
Query: 164 DWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITK 223
+ + + R+PI TGNDFST+YAPLI DGRMEKFYW P ED + + +++ D ++
Sbjct: 260 MYNKEE-NPRVPIXVTGNDFSTLYAPLIPDGRMEKFYWAPTREDRIGVCKGIFQTDNVSD 318
Query: 224 DEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPV-F 282
+ V IV TFP Q++DF+GALR+R YD + KW+ G+EN+G +L+ R + PV F
Sbjct: 319 ESVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVSST-GIENIGKRLVNSR---DGPVTF 374
Query: 283 TPPEKTVEALLESGYSLLREQQLIMETKLSKEYM 316
P+ TVE LLE G+ L++EQ + +L+ YM
Sbjct: 375 EQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYM 408
>gi|169930138|gb|ACB05667.1| chloroplast rubisco activase [Capsicum annuum]
Length = 439
Score = 286 bits (731), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 150/319 (47%), Positives = 200/319 (62%), Gaps = 38/319 (11%)
Query: 32 RQKVTRSFEYL-QG-----------DYYIAPVFMASLCI--------------------W 59
+ S+EYL QG +YIAP FM L + W
Sbjct: 109 HHAIMNSYEYLSQGLKQYSMDNKLDGFYIAPAFMDKLVVHITKNFLQLPNIKIPLILGVW 168
Query: 60 GGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMS 119
GGKGQGKSFQ EL+F+ MGI P++MSAGELES AGEP KLIR+RYR A+++++ +G M
Sbjct: 169 GGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIR-KGTMC 227
Query: 120 CLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIF 178
CL IND+DAG GR G TQ TVNNQ+V TLMN++DNPT V + + + + R+PII
Sbjct: 228 CLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQE-NCRVPIIV 286
Query: 179 TGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQAL 238
TGNDFST+YAPLIRDGRMEKFYW P ED + + ++ D + + V IV +FP Q++
Sbjct: 287 TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDNVPDEAVVKIVDSFPGQSI 346
Query: 239 DFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYS 298
DF+GALR+R YD + KW+ G+E +G KLL R P F P+ T+E LLE G
Sbjct: 347 DFFGALRARVYDDEVRKWVSGT-GIEAVGEKLLNSRDGP--PTFEQPKMTLEKLLEYGNM 403
Query: 299 LLREQQLIMETKLSKEYMK 317
L++EQ+ + +L++ Y+K
Sbjct: 404 LVKEQENVKRVQLAETYLK 422
>gi|12620881|gb|AAG61120.1| ribulose-1,5-bisphosphate carboxylase/oxygenase activase 1
[Gossypium hirsutum]
Length = 438
Score = 286 bits (731), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 145/292 (49%), Positives = 192/292 (65%), Gaps = 26/292 (8%)
Query: 46 YYIAPVFMASLC--------------------IWGGKGQGKSFQTELIFQAMGIEPVIMS 85
+YIAP FM L IWGGKGQGKSFQ EL+F MGI P++MS
Sbjct: 134 FYIAPAFMDKLVVHITKNYMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 193
Query: 86 AGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQI 144
AGELES AGEP KLIR+RYR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ+
Sbjct: 194 AGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQM 252
Query: 145 VVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPN 204
V TLMN++DNPT V + + + + R+PII TGNDFST+YAPLIRDGRMEKFYW P
Sbjct: 253 VNATLMNIADNPTNVQLPGMYNKEE-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT 311
Query: 205 LEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVE 264
ED + + ++ D + D++ +V TFP Q++DF+GALR+R YD + KWI ++ GV
Sbjct: 312 REDRIGVCTGIFRTDNVPVDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWIGEV-GVN 370
Query: 265 NLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYM 316
++G KL+ R+ P F P T+E LLE G L+ EQ+ + +L+ +Y+
Sbjct: 371 SVGKKLVNSREGP--PSFEQPTMTIEKLLEYGNMLVAEQENVKRVQLADKYL 420
>gi|115334977|gb|ABI94076.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase
activase large protein isoform [Acer rubrum]
Length = 474
Score = 285 bits (730), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 153/332 (46%), Positives = 207/332 (62%), Gaps = 30/332 (9%)
Query: 10 GVIDPLF-AGNFLGKDSDIVFDYRQKVTRSFEYLQGD---YYIAPVFMASLC-------- 57
G++D LF A + G ++ Y T YL+ +YIAP FM L
Sbjct: 91 GLVDSLFQAPSGTGTHYAVMSSYDYISTGLRTYLENSMDGFYIAPAFMDKLVVHITKNFM 150
Query: 58 ------------IWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERY 105
IWGGKGQGKSFQ EL+F MGI P++MSAGELES AGEP KLIR+RY
Sbjct: 151 SLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGITPIMMSAGELESGNAGEPAKLIRQRY 210
Query: 106 RTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIGQD 164
R A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ+V TLMN++DNPT V +
Sbjct: 211 REAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTSVQLPGM 269
Query: 165 WRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITKD 224
+ + + R+PII TGNDFST+YAPLIRDGRMEKFYW P ED + + ++ D +
Sbjct: 270 YNKEE-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRSDNVADG 328
Query: 225 EVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVFTP 284
E+ +V TFP Q++DF+GALR+R YD + KWI I GV+++G L+ + P F
Sbjct: 329 ELIKLVDTFPGQSIDFFGALRARVYDDEVRKWISGI-GVDSIGKNLVNSKNGP--PTFEQ 385
Query: 285 PEKTVEALLESGYSLLREQQLIMETKLSKEYM 316
P+ T++ LLE G L++EQ+ + +L+ +Y+
Sbjct: 386 PKMTIDKLLEYGNMLVQEQENVKRVQLADKYL 417
>gi|290766481|gb|ADD60243.1| rubisco activase [Glycine max]
Length = 474
Score = 285 bits (729), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 144/292 (49%), Positives = 194/292 (66%), Gaps = 26/292 (8%)
Query: 46 YYIAPVFMAS--------------------LCIWGGKGQGKSFQTELIFQAMGIEPVIMS 85
+YIAP FM L IWGGKGQGKSFQ EL+F MGI P++MS
Sbjct: 131 FYIAPAFMDKIVVHITKNFLNLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIVMS 190
Query: 86 AGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQI 144
AGELES AGEP KLIR+RYR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ+
Sbjct: 191 AGELESGNAGEPAKLIRQRYREAADIIR-KGKMCCLFINDLDAGAGRLGGTTQYTVNNQM 249
Query: 145 VVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPN 204
V TLMN++DNPT V + + + + R+PII TGNDFST+YAPLIRDGRMEKFYW P
Sbjct: 250 VNATLMNIADNPTNVQLPGMYNKEE-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT 308
Query: 205 LEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVE 264
+D + + ++ DG+ K+++ +V TF Q++DF+GALR+R YD + KWI + GVE
Sbjct: 309 RDDRIGVCQGIFRTDGVLKEDIIKLVDTFLGQSIDFFGALRARVYDDEVRKWISGV-GVE 367
Query: 265 NLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYM 316
N+G KL+ ++ P F P+ T+ LLE G L++EQ+ + +L+ +Y+
Sbjct: 368 NIGKKLVNSKEGP--PTFEQPKMTLSKLLEYGNMLVQEQENVKRVQLADKYL 417
>gi|115334975|gb|ABI94075.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase
activase small protein isoform [Acer rubrum]
Length = 437
Score = 285 bits (729), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 153/332 (46%), Positives = 207/332 (62%), Gaps = 30/332 (9%)
Query: 10 GVIDPLF-AGNFLGKDSDIVFDYRQKVTRSFEYLQGD---YYIAPVFMASLC-------- 57
G++D LF A + G ++ Y T YL+ +YIAP FM L
Sbjct: 91 GLVDSLFQAPSGTGTHYAVMSSYDYISTGLRTYLENSMDGFYIAPAFMDKLVVHITKNFM 150
Query: 58 ------------IWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERY 105
IWGGKGQGKSFQ EL+F MGI P++MSAGELES AGEP KLIR+RY
Sbjct: 151 SLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGITPIMMSAGELESGNAGEPAKLIRQRY 210
Query: 106 RTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIGQD 164
R A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ+V TLMN++DNPT V +
Sbjct: 211 REAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTSVQLPGM 269
Query: 165 WRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITKD 224
+ + + R+PII TGNDFST+YAPLIRDGRMEKFYW P ED + + ++ D +
Sbjct: 270 YNKEE-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRSDNVADG 328
Query: 225 EVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVFTP 284
E+ +V TFP Q++DF+GALR+R YD + KWI I GV+++G L+ + P F
Sbjct: 329 ELIKLVDTFPGQSIDFFGALRARVYDDEVRKWISGI-GVDSIGKNLVNSKNGP--PTFEQ 385
Query: 285 PEKTVEALLESGYSLLREQQLIMETKLSKEYM 316
P+ T++ LLE G L++EQ+ + +L+ +Y+
Sbjct: 386 PKMTIDKLLEYGNMLVQEQENVKRVQLADKYL 417
>gi|12643757|sp|Q40460.1|RCA1_TOBAC RecName: Full=Ribulose bisphosphate carboxylase/oxygenase activase
1, chloroplastic; Short=RA 1; Short=RuBisCO activase 1;
Flags: Precursor
gi|1006835|gb|AAA78277.1| rubisco activase precursor [Nicotiana tabacum]
Length = 442
Score = 285 bits (728), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 150/319 (47%), Positives = 201/319 (63%), Gaps = 38/319 (11%)
Query: 32 RQKVTRSFEYL-QG-----------DYYIAPVFMASLC--------------------IW 59
V +S+EY+ QG +YIAP FM L IW
Sbjct: 109 HHAVLQSYEYVSQGLRQYNLDNKLDGFYIAPAFMDKLVVHITKNFLKLPNIKVPLILGIW 168
Query: 60 GGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMS 119
GGKGQGKSFQ EL+F+ MGI P++MSAGELES AGEP KLIR+RYR A+++++ +G M
Sbjct: 169 GGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIR-KGNMC 227
Query: 120 CLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIF 178
CL IND+DAG GR G TQ TVNNQ+V TLMN++DNPT V + + + + R+PII
Sbjct: 228 CLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQE-NARVPIIV 286
Query: 179 TGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQAL 238
TGNDFST+YAPLIRDGRMEKFYW P ED + + ++ D + ++V IV FP Q++
Sbjct: 287 TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCTGIFRTDNVPAEDVVKIVDNFPGQSI 346
Query: 239 DFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYS 298
DF+GALR+R YD + KW+ G+E +G+KLL P F P+ T+E LLE G
Sbjct: 347 DFFGALRARVYDDEVRKWVSGT-GIEKIGDKLLNSFDGP--PTFEQPKMTIEKLLEYGNM 403
Query: 299 LLREQQLIMETKLSKEYMK 317
L++EQ+ + +L+ +Y+K
Sbjct: 404 LVQEQENVKRVQLADKYLK 422
>gi|410927466|gb|AFV93498.1| chloroplast ribulose bisphosphate carboxylase/oxygenase activase
alpha 2, partial [Gossypium barbadense]
Length = 371
Score = 285 bits (728), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 152/315 (48%), Positives = 199/315 (63%), Gaps = 38/315 (12%)
Query: 35 VTRSFEYL-QG-----------DYYIAPVFMASLC--------------------IWGGK 62
V S+EYL QG +YIAP FM L IWGGK
Sbjct: 36 VMSSYEYLSQGLKTYNLDNNMDGFYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGK 95
Query: 63 GQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLM 122
GQGKSFQ EL+F MGI P++MSAGELES AGEP KLIR+RYR A+ +++ +GKM L
Sbjct: 96 GQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCALF 154
Query: 123 INDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGN 181
IND+DAG GR G TQ TVNNQ+V TLMN++DNPT V + + + + R+PII TGN
Sbjct: 155 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEE-NPRVPIIVTGN 213
Query: 182 DFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFY 241
DFST+YAPLIRDGRMEKFYW P +D + + ++ DGI +++ +V TFP Q++DF+
Sbjct: 214 DFSTLYAPLIRDGRMEKFYWAPTRDDRVGVCKGIFRTDGIPDEDIVKLVDTFPGQSIDFF 273
Query: 242 GALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLR 301
GALR+R YD + KWI D+ GV +G KL+ R P F P+ T+E LLE G L+
Sbjct: 274 GALRARVYDDEVRKWISDV-GVAGVGKKLVNSRDGP--PTFEQPKMTIEKLLEYGNMLVA 330
Query: 302 EQQLIMETKLSKEYM 316
EQ+ + +L+ +Y+
Sbjct: 331 EQENVKRVQLADKYL 345
>gi|224140291|ref|XP_002323516.1| predicted protein [Populus trichocarpa]
gi|222868146|gb|EEF05277.1| predicted protein [Populus trichocarpa]
Length = 476
Score = 284 bits (727), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 151/328 (46%), Positives = 209/328 (63%), Gaps = 26/328 (7%)
Query: 10 GVIDPLFAGNFLGKDSDIV----FDYRQKVTRSFEY---LQGDYYIAPVFMASLCIW--- 59
G++D LF +G + +DY K R ++ + G +YIA FM L +
Sbjct: 91 GMVDSLFQAP-MGTGTHYAVMSSYDYTSKGLRQYKLDNNMDG-FYIASSFMDKLVVHITK 148
Query: 60 ---------GGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQ 110
KGQGKSFQ EL+F MGI PV+MSAGELES AGEP KLIR+RYR A+
Sbjct: 149 NFLQLPNIKASKGQGKSFQCELVFAKMGINPVVMSAGELESGNAGEPAKLIRQRYREAAD 208
Query: 111 VVQNQGKMSCLMINDIDAGLGRF-GNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESD 169
+++ +GKM CL IND+DAG GRF G TQ TVNNQ+V TLMN++DNPT V + + + +
Sbjct: 209 IIKKRGKMCCLFINDLDAGAGRFGGTTQYTVNNQMVNATLMNIADNPTSVQLPGMYNKEE 268
Query: 170 ITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITKDEVGSI 229
R+PII TGNDFST+YAPLIRDGRMEKFYW P ED + + ++ D + ++++ +
Sbjct: 269 -NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCTGIFGSDNVPREDIVKL 327
Query: 230 VKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVFTPPEKTV 289
V TF Q++DF+GALR+R YD + KWI + GVEN+G +L+ ++ P+ P+ T+
Sbjct: 328 VNTFHGQSIDFFGALRARAYDDEVRKWISGV-GVENVGKRLVNSKEGP--PILEQPKMTL 384
Query: 290 EALLESGYSLLREQQLIMETKLSKEYMK 317
E LLE G L+ EQ+ + +LS +Y+K
Sbjct: 385 EKLLEYGNMLVLEQENVKRVRLSDKYLK 412
>gi|7960277|gb|AAF71272.1|AF251264_1 ribulose bisphosphate carboxylase activase B [Triticum aestivum]
Length = 432
Score = 284 bits (727), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 149/333 (44%), Positives = 207/333 (62%), Gaps = 31/333 (9%)
Query: 10 GVIDPLFAGNFLGKDSDIV---FDYRQKVTRSFEY--LQGDYYIAPVFMASLC------- 57
G++D LF + + ++Y + R +++ YIAP FM L
Sbjct: 84 GIVDSLFQAPMGDGTHEAILSSYEYISQGLRKYDFDNTMDGLYIAPAFMDKLIVHLAKNF 143
Query: 58 -------------IWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRER 104
IWGGKGQGKSFQ EL+F MGI P++MSAGELES AGEP KLIR+R
Sbjct: 144 MTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQR 203
Query: 105 YRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIGQ 163
YR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ+V TLMN++D PT V
Sbjct: 204 YREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAPTNVQFPG 262
Query: 164 DWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITK 223
+ + + R+PII TGNDFST+YAPLIRDGRMEKFYW P ED + + ++ D +
Sbjct: 263 MYNKEE-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDNVPD 321
Query: 224 DEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVFT 283
+ V +V TFP Q++DF+GALR+R YD + KW+ +I GVEN+ +L+ R+ P F
Sbjct: 322 EAVVRLVDTFPGQSIDFFGALRARVYDDEVRKWVGEI-GVENISKRLVNSREGP--PTFD 378
Query: 284 PPEKTVEALLESGYSLLREQQLIMETKLSKEYM 316
P+ T+E L+E G+ L++EQ+ + +L+ +Y+
Sbjct: 379 QPKMTIEKLMEYGHMLVQEQENVKRVQLADKYL 411
>gi|356504250|ref|XP_003520910.1| PREDICTED: LOW QUALITY PROTEIN: ribulose bisphosphate
carboxylase/oxygenase activase 1, chloroplastic-like
[Glycine max]
Length = 474
Score = 284 bits (727), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 144/292 (49%), Positives = 193/292 (66%), Gaps = 26/292 (8%)
Query: 46 YYIAPVFMAS--------------------LCIWGGKGQGKSFQTELIFQAMGIEPVIMS 85
+YIAP FM L IWGGKGQGKSFQ EL+F MGI P++MS
Sbjct: 131 FYIAPAFMDKIVVHITKNFLNLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIVMS 190
Query: 86 AGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQI 144
AGELES AGEP KLIR+RYR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ+
Sbjct: 191 AGELESGNAGEPAKLIRQRYREAADIIR-KGKMCCLFINDLDAGAGRLGGTTQYTVNNQM 249
Query: 145 VVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPN 204
V TLMN++DNPT V + + + + R+PII TGNDFST+YAPLIRDGRMEKFYW P
Sbjct: 250 VNATLMNIADNPTNVQLPGMYNKEE-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT 308
Query: 205 LEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVE 264
+D + + ++ DG+ K+++ +V TF Q++DF+GALR R YD + KWI + GVE
Sbjct: 309 RDDRIGVCQGIFRTDGVLKEDIIKLVDTFLGQSIDFFGALRXRVYDDEVRKWISGV-GVE 367
Query: 265 NLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYM 316
N+G KL+ ++ P F P+ T+ LLE G L++EQ+ + +L+ +Y+
Sbjct: 368 NIGKKLVNSKEGP--PTFEQPKMTLSKLLEYGNMLVQEQENVKRVQLADKYL 417
>gi|410927512|gb|AFV93502.1| chloroplast ribulose bisphosphate carboxylase/oxygenase activase
alpha 2, partial [Gossypium barbadense]
Length = 344
Score = 284 bits (727), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 152/315 (48%), Positives = 199/315 (63%), Gaps = 38/315 (12%)
Query: 35 VTRSFEYL-QG-----------DYYIAPVFMASLC--------------------IWGGK 62
V S+EYL QG +YIAP FM L IWGGK
Sbjct: 16 VMSSYEYLSQGLKTYNLDNNMDGFYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGK 75
Query: 63 GQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLM 122
GQGKSFQ EL+F MGI P++MSAGELES AGEP KLIR+RYR A+ +++ +GKM L
Sbjct: 76 GQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCALF 134
Query: 123 INDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGN 181
IND+DAG GR G TQ TVNNQ+V TLMN++DNPT V + + + + R+PII TGN
Sbjct: 135 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEE-NPRVPIIVTGN 193
Query: 182 DFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFY 241
DFST+YAPLIRDGRMEKFYW P +D + + ++ DGI +++ +V TFP Q++DF+
Sbjct: 194 DFSTLYAPLIRDGRMEKFYWAPTRDDRVGVCKGIFRTDGIPDEDIVKLVDTFPGQSIDFF 253
Query: 242 GALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLR 301
GALR+R YD + KWI D+ GV +G KL+ R P F P+ T+E LLE G L+
Sbjct: 254 GALRARVYDDEVRKWISDV-GVAGVGKKLVNSRDGP--PTFEQPKMTIEKLLEYGNMLVA 310
Query: 302 EQQLIMETKLSKEYM 316
EQ+ + +L+ +Y+
Sbjct: 311 EQENVKRVQLADKYL 325
>gi|78100212|gb|ABB20913.1| ribulose-1,5-bisphosphate carboxylase/oxygenase activase alpha 2
[Gossypium hirsutum]
Length = 421
Score = 284 bits (727), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 152/315 (48%), Positives = 199/315 (63%), Gaps = 38/315 (12%)
Query: 35 VTRSFEYL-QG-----------DYYIAPVFMASLC--------------------IWGGK 62
V S+EYL QG +YIAP FM L IWGGK
Sbjct: 55 VMSSYEYLSQGLKTYNLDNNMDGFYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGK 114
Query: 63 GQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLM 122
GQGKSFQ EL+F MGI P++MSAGELES AGEP KLIR+RYR A+ +++ +GKM L
Sbjct: 115 GQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCALF 173
Query: 123 INDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGN 181
IND+DAG GR G TQ TVNNQ+V TLMN++DNPT V + + + + R+PII TGN
Sbjct: 174 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEE-NPRVPIIVTGN 232
Query: 182 DFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFY 241
DFST+YAPLIRDGRMEKFYW P +D + + ++ DGI +++ +V TFP Q++DF+
Sbjct: 233 DFSTLYAPLIRDGRMEKFYWAPTRDDRVGVCKGIFRTDGIPDEDIVKLVDTFPGQSIDFF 292
Query: 242 GALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLR 301
GALR+R YD + KWI D+ GV +G KL+ R P F P+ T+E LLE G L+
Sbjct: 293 GALRARVYDDEVRKWISDV-GVAGVGKKLVNSRDGP--PTFEQPKMTIEKLLEYGNMLVA 349
Query: 302 EQQLIMETKLSKEYM 316
EQ+ + +L+ +Y+
Sbjct: 350 EQENVKRVQLADKYL 364
>gi|407911678|gb|AFU50387.1| chloroplast ribulose bisphosphate carboxylase/oxygenase activase
small isoform c [Ipomoea batatas]
Length = 439
Score = 284 bits (726), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 152/334 (45%), Positives = 210/334 (62%), Gaps = 31/334 (9%)
Query: 10 GVIDPLFAGNF-LGKDSDIVFDY----RQKVTRSFEYLQGDYYIAPVFMASLC------- 57
G++D LF G ++ Y + + T S + +YIAP FM L
Sbjct: 91 GLVDTLFQAPMGTGTHHAVLSSYEYVSQGQKTYSLDNKLDGFYIAPAFMDKLVVHITKNF 150
Query: 58 -------------IWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRER 104
IWGGKGQGKSFQ EL+F+ MGI P++MSAGELES AGEP KLIR+R
Sbjct: 151 LKLPNIKIPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQR 210
Query: 105 YRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIGQ 163
YR A++ ++ +G M CL IND+DAG GR G TQ TVNNQ+V TLMN++DNPT V +
Sbjct: 211 YREAAENIR-KGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPG 269
Query: 164 DWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITK 223
+ + + R+PII TGNDFST+YAPLIRDGRMEKFYW P +D + + +++ DG+
Sbjct: 270 MYNKQE-NARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRVGVCKGIFKTDGVPD 328
Query: 224 DEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVFT 283
+ V +V TFP Q++DF+GALR+R YD + K++ + GVE + +LL R+ PVF
Sbjct: 329 EHVVKLVDTFPGQSIDFFGALRARVYDDEVRKFVAGL-GVEKVNERLLNSREGA--PVFA 385
Query: 284 PPEKTVEALLESGYSLLREQQLIMETKLSKEYMK 317
P+ T+E LLE G L++EQ+ + +L+ +Y+K
Sbjct: 386 QPKMTIEKLLEYGNMLVQEQENVKRVQLADKYLK 419
>gi|449503259|ref|XP_004161913.1| PREDICTED: LOW QUALITY PROTEIN: ribulose bisphosphate
carboxylase/oxygenase activase 1, chloroplastic-like
[Cucumis sativus]
Length = 443
Score = 284 bits (726), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 147/316 (46%), Positives = 199/316 (62%), Gaps = 39/316 (12%)
Query: 35 VTRSFEYLQ-------------GDYYIAPVFMASLCI--------------------WGG 61
V S+EYL G YIAP FM L + WGG
Sbjct: 115 VMSSYEYLSQGRKSYDGMDNVLGGLYIAPAFMDKLVVHITKNFLSLPNIKVPLILGLWGG 174
Query: 62 KGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCL 121
KGQGKSFQ EL+F MGI P++MSAGELES AGEP KLIR+RYR A+ +++ +GKMSCL
Sbjct: 175 KGQGKSFQCELVFAKMGITPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMSCL 233
Query: 122 MINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTG 180
IND+DAG GR G TQ TVNNQ+V TLMN++DNPT V + + + + R+PII TG
Sbjct: 234 FINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEE-NPRVPIIVTG 292
Query: 181 NDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDF 240
NDFST+YAPLIRDGRMEKFYW P ED + + ++ D + D++ +V TFP Q++DF
Sbjct: 293 NDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDNVADDDIVKLVDTFPGQSIDF 352
Query: 241 YGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLL 300
+GALR+R YD + KW+ + GV+++G KL+ ++ P F P ++ LLE G L+
Sbjct: 353 FGALRARVYDDEVRKWVTGV-GVQSIGKKLVNSKEPP--PKFEQPTMSLXKLLEYGGMLV 409
Query: 301 REQQLIMETKLSKEYM 316
+EQ+ + +L++ Y+
Sbjct: 410 QEQENVKRVQLAETYL 425
>gi|10720249|sp|O98997.2|RCA_PHAAU RecName: Full=Ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic; Short=RA; Short=RuBisCO activase; Flags:
Precursor
gi|8954287|gb|AAD20019.2| rubisco activase [Vigna radiata]
Length = 439
Score = 284 bits (726), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 148/333 (44%), Positives = 209/333 (62%), Gaps = 33/333 (9%)
Query: 10 GVIDPLF-----AGNFLGKDSDIVFDYRQKVTRSFEYLQGDYYIAPVFMASLC------- 57
G++DPLF AG S ++Y R + ++ +YIAP F+ L
Sbjct: 94 GMVDPLFQAPMDAGTHYAVMSS--YEYLSTGLRQLDNIKDGFYIAPAFLDKLVVHITKNF 151
Query: 58 -------------IWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRER 104
IWGGKGQGKSFQ EL+F MGI P++MSAGELES AGEP KLIR+R
Sbjct: 152 MTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQR 211
Query: 105 YRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIGQ 163
YR A+ ++ +GKM L IND+DAG GR G TQ TVNNQ+V TLMN++DNPT V +
Sbjct: 212 YREAADLIA-KGKMCALFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPG 270
Query: 164 DWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITK 223
+ + + R+PII TGNDFST+YAPLIRDGRMEKFYW P +D + + ++ DG+ +
Sbjct: 271 MYNKEE-NARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRVGVCKGIFRTDGVPE 329
Query: 224 DEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVFT 283
+++ +V TFP Q++DF+GALR+R YD + KWI + GV+ G KL+ ++ P F
Sbjct: 330 EDITKLVDTFPGQSIDFFGALRARVYDDEVRKWISGV-GVDATGKKLVNSKEGP--PTFD 386
Query: 284 PPEKTVEALLESGYSLLREQQLIMETKLSKEYM 316
P+ +++ LL+ G L++EQ+ + +L+ +Y+
Sbjct: 387 QPKMSLDKLLQYGNMLVQEQENVKRVQLADKYL 419
>gi|12643758|sp|Q40565.1|RCA2_TOBAC RecName: Full=Ribulose bisphosphate carboxylase/oxygenase activase
2, chloroplastic; Short=RA 2; Short=RuBisCO activase 2;
Flags: Precursor
gi|19990|emb|CAA78703.1| ribulose bisphosphate carboxylase activase [Nicotiana tabacum]
Length = 439
Score = 284 bits (726), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 150/319 (47%), Positives = 202/319 (63%), Gaps = 38/319 (11%)
Query: 32 RQKVTRSFEYL-QG-----------DYYIAPVFMASLCI--------------------W 59
V +S+EY+ QG +YIAP FM L + W
Sbjct: 109 HHAVLQSYEYVSQGLRQYNMDNTLDGFYIAPSFMDKLVVHITKNFLKLPNIKVPLILGVW 168
Query: 60 GGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMS 119
GGKGQGKSFQ EL+F+ MGI P++MSAGELES AGEP KLIR+RYR A+++++ +G +
Sbjct: 169 GGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIR-KGNIC 227
Query: 120 CLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIF 178
CL IND+DAG GR G TQ TVNNQ+V TLMN++DNPT V + + + + R+PII
Sbjct: 228 CLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQE-NARVPIIV 286
Query: 179 TGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQAL 238
TGNDFST+YAPLIRDGRMEKFYW P ED + + ++ D + ++ V IV TFP Q++
Sbjct: 287 TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDNVPEEAVIKIVDTFPGQSI 346
Query: 239 DFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYS 298
DF+GALR+R YD + KW+ G+E +G+KLL P F P+ TVE LLE G
Sbjct: 347 DFFGALRARVYDDEVRKWVSGT-GIEAIGDKLLNSFDGP--PTFEQPKMTVEKLLEYGNM 403
Query: 299 LLREQQLIMETKLSKEYMK 317
L++EQ+ + +L++ Y+K
Sbjct: 404 LVQEQENVKRVQLAETYLK 422
>gi|449441384|ref|XP_004138462.1| PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase 1,
chloroplastic-like [Cucumis sativus]
Length = 474
Score = 283 bits (725), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 151/333 (45%), Positives = 206/333 (61%), Gaps = 31/333 (9%)
Query: 10 GVIDPLFAGNFLGKDSDIV---FDYRQKVTRSFEYLQG--DYYIAPVFMASLC------- 57
G++D LF D V ++Y R + + +YIAP FM L
Sbjct: 90 GMVDTLFQAPSGAGTHDPVLSSYEYLSAGLRQYNFDNNVDGFYIAPAFMDKLVVHISKNF 149
Query: 58 -------------IWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRER 104
IWGGKGQGKSFQ EL+F MGI P++MSAGELES AGEP KLIR+R
Sbjct: 150 MKLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQR 209
Query: 105 YRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIGQ 163
YR A+ +++ +GKM L IND+DAG GR G TQ TVNNQ+V TLMN++DNPT V +
Sbjct: 210 YREAADIIK-KGKMCALFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPG 268
Query: 164 DWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITK 223
+ + + R+PII TGNDFST+YAPLIRDGRMEKFYW P ED + + ++ D I K
Sbjct: 269 MYNKEE-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRSDNIPK 327
Query: 224 DEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVFT 283
+++ +V TFP Q++DF+GALR+R YD + W+ + GVEN+ KL+ ++ P F
Sbjct: 328 EDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWVCSV-GVENIAKKLVNSKEGP--PTFE 384
Query: 284 PPEKTVEALLESGYSLLREQQLIMETKLSKEYM 316
P+ T+E LLE G L++EQ+ + +L+ +Y+
Sbjct: 385 QPKMTLEKLLEYGNMLVQEQENVKRVQLADKYL 417
>gi|162312077|gb|ABX84141.1| rubisco activase [Ipomoea batatas]
gi|407911674|gb|AFU50385.1| chloroplast ribulose bisphosphate carboxylase/oxygenase activase
small isoform a [Ipomoea batatas]
Length = 439
Score = 283 bits (725), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 152/334 (45%), Positives = 209/334 (62%), Gaps = 31/334 (9%)
Query: 10 GVIDPLFAGNF-LGKDSDIVFDY----RQKVTRSFEYLQGDYYIAPVFMASLC------- 57
G++D LF G ++ Y + + T S + +YIAP FM L
Sbjct: 91 GLVDTLFQAPMGTGTHHAVLSSYEYVSQGQKTYSLDNKLDGFYIAPAFMDKLVVHITKNF 150
Query: 58 -------------IWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRER 104
IWGGKGQGKSFQ EL+F+ MGI P++MSAGELES AGEP KLIR+R
Sbjct: 151 LKLPNIKIPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQR 210
Query: 105 YRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIGQ 163
YR A++ ++ +G M CL IND+DAG GR G TQ TVNNQ+V TLMN++DNPT V +
Sbjct: 211 YREAAENIR-KGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPG 269
Query: 164 DWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITK 223
+ + + R+PII TGNDFST+YAPLIRDGRMEKFYW P +D + + ++ DG+
Sbjct: 270 MYNKQE-NARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRVGVCKGIFRTDGVPD 328
Query: 224 DEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVFT 283
+ V +V TFP Q++DF+GALR+R YD + K++ + GVE + +LL R+ PVF
Sbjct: 329 EHVVKLVDTFPGQSIDFFGALRARVYDDEVRKFVAGL-GVEKVNERLLNSREGA--PVFA 385
Query: 284 PPEKTVEALLESGYSLLREQQLIMETKLSKEYMK 317
P+ T+E LLE G L++EQ+ + +L+ +Y+K
Sbjct: 386 QPKMTIEKLLEYGNMLVQEQENVKRVQLADKYLK 419
>gi|407911676|gb|AFU50386.1| chloroplast ribulose bisphosphate carboxylase/oxygenase activase
small isoform b [Ipomoea batatas]
Length = 439
Score = 283 bits (725), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 152/334 (45%), Positives = 209/334 (62%), Gaps = 31/334 (9%)
Query: 10 GVIDPLFAGNF-LGKDSDIVFDY----RQKVTRSFEYLQGDYYIAPVFMASLC------- 57
G++D LF G ++ Y + + T S + +YIAP FM L
Sbjct: 91 GLVDTLFQAPMGTGTHHAVLSSYEYVSQGQKTYSLDNKLDGFYIAPAFMDKLVVHITKNF 150
Query: 58 -------------IWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRER 104
IWGGKGQGKSFQ EL+F+ MGI P++MSAGELES AGEP KLIR+R
Sbjct: 151 LKLPNIKIPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQR 210
Query: 105 YRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIGQ 163
YR A++ ++ +G M CL IND+DAG GR G TQ TVNNQ+V TLMN++DNPT V +
Sbjct: 211 YREAAENIR-KGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPG 269
Query: 164 DWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITK 223
+ + + R+PII TGNDFST+YAPLIRDGRMEKFYW P +D + + ++ DG+
Sbjct: 270 MYNKQE-NARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRVGVCKGIFRTDGVPD 328
Query: 224 DEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVFT 283
+ V +V TFP Q++DF+GALR+R YD + K++ + GVE + +LL R+ PVF
Sbjct: 329 EHVVKLVDTFPGQSIDFFGALRARVYDDEVRKFVAGL-GVEKVNERLLNSREGA--PVFA 385
Query: 284 PPEKTVEALLESGYSLLREQQLIMETKLSKEYMK 317
P+ T+E LLE G L++EQ+ + +L+ +Y+K
Sbjct: 386 QPKMTIEKLLEYGNMLVQEQENVKRVQLADKYLK 419
>gi|445628|prf||1909374A RuBisCO activase
Length = 383
Score = 283 bits (725), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 150/319 (47%), Positives = 201/319 (63%), Gaps = 38/319 (11%)
Query: 32 RQKVTRSFEYL-QG-----------DYYIAPVFMASLC--------------------IW 59
V +S+EY+ QG +YIAP FM L IW
Sbjct: 50 HHAVLQSYEYVSQGLRQYNLDNKLDGFYIAPAFMDKLVVHITKNFLKLPNIKVPLILGIW 109
Query: 60 GGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMS 119
GGKGQGKSFQ EL+F+ MGI P++MSAGELES AGEP KLIR+RYR A+++++ +G M
Sbjct: 110 GGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIR-KGNMC 168
Query: 120 CLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIF 178
CL IND+DAG GR G TQ TVNNQ+V TLMN++DNPT V + + + + R+PII
Sbjct: 169 CLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQE-NARVPIIV 227
Query: 179 TGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQAL 238
TGNDFST+YAPLIRDGRMEKFYW P ED + + ++ D + ++V IV FP Q++
Sbjct: 228 TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCTGIFRTDNVPAEDVVKIVDNFPGQSI 287
Query: 239 DFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYS 298
DF+GALR+R YD + KW+ G+E +G+KLL P F P+ T+E LLE G
Sbjct: 288 DFFGALRARVYDDEVRKWVSGT-GIEKIGDKLLNSFDGP--PTFEQPKMTIEKLLEYGNM 344
Query: 299 LLREQQLIMETKLSKEYMK 317
L++EQ+ + +L+ +Y+K
Sbjct: 345 LVQEQENVKRVQLADKYLK 363
>gi|407911666|gb|AFU50381.1| chloroplast ribulose bisphosphate carboxylase/oxygenase activase
small isoform [Ipomoea batatas]
Length = 439
Score = 283 bits (725), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 152/334 (45%), Positives = 209/334 (62%), Gaps = 31/334 (9%)
Query: 10 GVIDPLFAGNF-LGKDSDIVFDY----RQKVTRSFEYLQGDYYIAPVFMASLC------- 57
G++D LF G ++ Y + + T S + +YIAP FM L
Sbjct: 91 GLVDTLFQAPMGTGTHHAVLSSYEYVSQGQKTYSLDNKLDGFYIAPAFMDKLVVHITKNF 150
Query: 58 -------------IWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRER 104
IWGGKGQGKSFQ EL+F+ MGI P++MSAGELES AGEP KLIR+R
Sbjct: 151 LKLPNIKIPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQR 210
Query: 105 YRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIGQ 163
YR A++ ++ +G M CL IND+DAG GR G TQ TVNNQ+V TLMN++DNPT V +
Sbjct: 211 YREAAENIR-KGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPG 269
Query: 164 DWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITK 223
+ + + R+PII TGNDFST+YAPLIRDGRMEKFYW P +D + + ++ DG+
Sbjct: 270 MYNKQE-NARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRVGVCKGIFRTDGVPD 328
Query: 224 DEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVFT 283
+ V +V TFP Q++DF+GALR+R YD + K++ + GVE + +LL R+ PVF
Sbjct: 329 EHVVKLVDTFPGQSIDFFGALRARVYDDEVRKFVAGL-GVEKVNERLLNSREGA--PVFA 385
Query: 284 PPEKTVEALLESGYSLLREQQLIMETKLSKEYMK 317
P+ T+E LLE G L++EQ+ + +L+ +Y+K
Sbjct: 386 QPKMTIEKLLEYGNMLVQEQENVKRVQLADKYLK 419
>gi|302760819|ref|XP_002963832.1| hypothetical protein SELMODRAFT_79425 [Selaginella moellendorffii]
gi|300169100|gb|EFJ35703.1| hypothetical protein SELMODRAFT_79425 [Selaginella moellendorffii]
Length = 451
Score = 283 bits (725), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 143/292 (48%), Positives = 190/292 (65%), Gaps = 25/292 (8%)
Query: 47 YIAPVFMASLCI--------------------WGGKGQGKSFQTELIFQAMGIEPVIMSA 86
YIAP FM L I WGGKGQGKSFQ EL+F +GI P+ MSA
Sbjct: 74 YIAPAFMDKLVIHISKNFMALPNIKVPLILGVWGGKGQGKSFQCELVFSKLGINPIAMSA 133
Query: 87 GELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIV 145
GELES AGEP KLIR+RYR A+ +++ +G+M L IND+DAG GR G TQ TVNNQ+V
Sbjct: 134 GELESGNAGEPAKLIRQRYREAADIIKKKGQMCVLFINDLDAGAGRMGGTTQYTVNNQMV 193
Query: 146 VGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNL 205
TLMN++DNPT V + + + ++ R+PII TGNDFST+YAPLIRDGRMEKFYW P
Sbjct: 194 NATLMNIADNPTNVQLPGIYTKEELP-RVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTR 252
Query: 206 EDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVEN 265
ED + + ++ D + +++ +V TFP Q++DF+GALR+R YD + KWI + GVEN
Sbjct: 253 EDRIGVCKGIFRSDEVPDEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWITQV-GVEN 311
Query: 266 LGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYMK 317
+G KL+ + P F P T++ LLE G L++EQ+ + L+ +YMK
Sbjct: 312 IGPKLVNSKDGP--PTFPKPPMTIDKLLEYGNMLVKEQENVKRYHLADKYMK 361
>gi|302780018|ref|XP_002971784.1| hypothetical protein SELMODRAFT_95817 [Selaginella moellendorffii]
gi|300160916|gb|EFJ27533.1| hypothetical protein SELMODRAFT_95817 [Selaginella moellendorffii]
Length = 451
Score = 283 bits (725), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 143/292 (48%), Positives = 190/292 (65%), Gaps = 25/292 (8%)
Query: 47 YIAPVFMASLCI--------------------WGGKGQGKSFQTELIFQAMGIEPVIMSA 86
YIAP FM L I WGGKGQGKSFQ EL+F +GI P+ MSA
Sbjct: 74 YIAPAFMDKLVIHISKNFMALPNIKVPLILGVWGGKGQGKSFQCELVFSKLGINPIAMSA 133
Query: 87 GELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIV 145
GELES AGEP KLIR+RYR A+ +++ +G+M L IND+DAG GR G TQ TVNNQ+V
Sbjct: 134 GELESGNAGEPAKLIRQRYREAADIIKKKGQMCVLFINDLDAGAGRMGGTTQYTVNNQMV 193
Query: 146 VGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNL 205
TLMN++DNPT V + + + ++ R+PII TGNDFST+YAPLIRDGRMEKFYW P
Sbjct: 194 NATLMNIADNPTNVQLPGIYTKEELP-RVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTR 252
Query: 206 EDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVEN 265
ED + + ++ D + +++ +V TFP Q++DF+GALR+R YD + KWI + GVEN
Sbjct: 253 EDRIGVCKGIFRTDDVPDEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWITQV-GVEN 311
Query: 266 LGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYMK 317
+G KL+ + P F P T++ LLE G L++EQ+ + L+ +YMK
Sbjct: 312 IGPKLVNSKDGP--PTFPKPPMTIDKLLEYGNMLVQEQENVKRYHLADKYMK 361
>gi|68565781|sp|Q7X999.1|RCA2_LARTR RecName: Full=Ribulose bisphosphate carboxylase/oxygenase activase
2, chloroplastic; Short=RA 2; Short=RuBisCO activase 2;
AltName: Full=RuBisCO activase beta form; Flags:
Precursor
gi|32481067|gb|AAP83930.1| Rubisco activase beta form precursor [Larrea tridentata]
Length = 435
Score = 283 bits (724), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 140/292 (47%), Positives = 193/292 (66%), Gaps = 26/292 (8%)
Query: 46 YYIAPVFMASLC--------------------IWGGKGQGKSFQTELIFQAMGIEPVIMS 85
+YIAP FM L IWGGKGQGKSFQ EL+F MGI P++MS
Sbjct: 131 FYIAPAFMDKLVVHITKNFLSLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 190
Query: 86 AGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQI 144
AGELES AGEP KLIR+RYR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ+
Sbjct: 191 AGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQM 249
Query: 145 VVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPN 204
V TLMN++DNPT V + + + + R+PII TGNDFST+YAPLIRDGRMEKFYW P
Sbjct: 250 VNATLMNIADNPTNVQLPGMYNKEE-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT 308
Query: 205 LEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVE 264
ED + + ++ D + ++++ +V FP Q++DF+GALR+R YD + KW+ ++ GV+
Sbjct: 309 REDRIGVCKGIFRTDNVPEEDIVKVVDQFPGQSIDFFGALRARVYDDEVRKWVSEV-GVD 367
Query: 265 NLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYM 316
+G KL+ ++ P F P+ T++ LL+ G L+ EQ+ + +L+ +YM
Sbjct: 368 TIGKKLVNSKEGP--PTFEQPKMTIDKLLQYGNMLVEEQENVKRVQLADKYM 417
>gi|303281738|ref|XP_003060161.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226458816|gb|EEH56113.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 498
Score = 283 bits (723), Expect = 9e-74, Method: Compositional matrix adjust.
Identities = 156/357 (43%), Positives = 215/357 (60%), Gaps = 40/357 (11%)
Query: 5 VGARAGVIDPLFAG----NF-LGKDSDIVF-DYRQKVTRSFEYLQGDYYIAPVFMASLC- 57
VGAR GV+D +FAG NF LG D+DI + R RS + Y+ P FM +C
Sbjct: 105 VGARKGVVDDVFAGTANANFVLGADADIATGELRYTEARSLTNVVDGCYVPPRFMDKVCV 164
Query: 58 -------------------IWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPG 98
IWG KG GKS+ EL +AM P+I+SAGELE E AG PG
Sbjct: 165 HLVKNHLAEGVGQVPLILGIWGEKGCGKSYTLELCLRAMRASPIIVSAGELEDEWAGAPG 224
Query: 99 KLIRERYRTASQVVQNQ-------GKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMN 151
+ IRERYR AS+++ G+++CL+IND+DAG G + TQ TVN Q+V+GTLMN
Sbjct: 225 RRIRERYRAASRLMSQARSISTLTGRLACLVINDLDAGAGTYRATQKTVNMQMVMGTLMN 284
Query: 152 LSDNPTRVSIG-QDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILN 210
L D+PT VS+G ++WRE R+PII TGND ST+YAPL+RDGRM+KF W P++++
Sbjct: 285 LCDHPTSVSVGAEEWREDRELRRVPIIITGNDLSTLYAPLLRDGRMDKFMWAPSIDERAA 344
Query: 211 IVHRMYEKDGITKDEVGSIVKTFPNQA---LDFYGALRSRTYDRSISKWIDDIGGVENLG 267
VH + G+T + +V+ F NQA LDF+GAL +RT D ++ +WI GG +G
Sbjct: 345 AVHAVMADAGVTARDALELVRAFSNQARSPLDFFGALHARTVDAAVLEWIARNGGARGMG 404
Query: 268 NKLLK-RRKDKELPVF--TPPEKTVEALLESGYSLLREQQLIMETKLSKEYMKNIDD 321
+ LL+ + ++ P + T+EALLE G L REQQ +++ +L EYMK + +
Sbjct: 405 DALLRGDARTRKAPSVDRSSSRLTLEALLEIGRELEREQQRVLDVRLVDEYMKGVKE 461
>gi|303277399|ref|XP_003057993.1| ribulose bisphosphate carboxylase/oxygenase activase, chloroplast
precursor [Micromonas pusilla CCMP1545]
gi|226460650|gb|EEH57944.1| ribulose bisphosphate carboxylase/oxygenase activase, chloroplast
precursor [Micromonas pusilla CCMP1545]
Length = 419
Score = 283 bits (723), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 151/333 (45%), Positives = 211/333 (63%), Gaps = 29/333 (8%)
Query: 10 GVIDPLFAGNF-LGKDSDIVFDYRQKVTRSFEYLQG----DYYIAPVFMAS--------- 55
G++D F G F LG + + V+ F+ L YYI+ +M
Sbjct: 66 GMVDSKFQGGFGLGGTQNAIMQGSDYVSDGFKDLSNMSDEGYYISKSYMDKITVHVAKNF 125
Query: 56 -----------LCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRER 104
L IWGGKGQGK+FQ+ LIF+ +GI P+IMSAGELES AGEP KLIR+R
Sbjct: 126 MDLPKIKVPLILGIWGGKGQGKTFQSTLIFKRLGIAPIIMSAGELESGNAGEPAKLIRQR 185
Query: 105 YRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIGQ 163
YR AS +++ +GKMS L IND+DAG GR G +TQ TVNNQ+V TLMNL+DNPT V +
Sbjct: 186 YREASDIIK-KGKMSTLFINDLDAGAGRMGGSTQYTVNNQMVNATLMNLADNPTNVQLPG 244
Query: 164 DWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITK 223
++ +I R+PII TGNDFST+YAPLIRDGRM+KFYW P ED + +++ DG+ +
Sbjct: 245 QYQVEEIP-RVPIIATGNDFSTLYAPLIRDGRMDKFYWSPTFEDRCGVACGIFKADGVNE 303
Query: 224 DEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVFT 283
+V +V+TF Q++DF+GALR+R YD+ + +W+ + G EN+G+ L+ +DK F
Sbjct: 304 KDVEVLVRTFDGQSIDFFGALRARVYDQKVREWVQTV-GQENIGSYLVNPSRDKGKLEFE 362
Query: 284 PPEKTVEALLESGYSLLREQQLIMETKLSKEYM 316
PP ++E LL+ G +L EQ+ + +L+ Y+
Sbjct: 363 PPVMSLEVLLQHGKALEGEQENVKRVQLADAYL 395
>gi|410927436|gb|AFV93497.1| chloroplast ribulose bisphosphate carboxylase/oxygenase activase
alpha1, partial [Gossypium barbadense]
Length = 371
Score = 283 bits (723), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 143/292 (48%), Positives = 193/292 (66%), Gaps = 26/292 (8%)
Query: 46 YYIAPVFMASLC--------------------IWGGKGQGKSFQTELIFQAMGIEPVIMS 85
+YIAP FM L IWGGKGQGKSFQ EL+F MGI P++MS
Sbjct: 59 FYIAPAFMDKLVVHISKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 118
Query: 86 AGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQI 144
AGELES AGEP KLIR+RYR A+ +++ +GKM L IND+DAG GR G TQ TVNNQ+
Sbjct: 119 AGELESGNAGEPAKLIRQRYREAADIIK-KGKMCALFINDLDAGAGRMGGTTQYTVNNQM 177
Query: 145 VVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPN 204
V TLMN++DNPT V + + + + R+PII TGNDFST+YAPLIRDGRMEKFYW P
Sbjct: 178 VNATLMNIADNPTNVQLPGMYNKEE-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT 236
Query: 205 LEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVE 264
+D + + ++ DG+ +++ +V TFP Q++DF+GALR+R YD + KWI ++ GV
Sbjct: 237 RDDRIGVCKGIFRTDGVRDEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEV-GVA 295
Query: 265 NLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYM 316
++G KL+ R+ P F P+ T+E LLE G L+ EQ+ + +L+ +Y+
Sbjct: 296 SVGKKLVNSREGP--PTFEQPKMTIEKLLEYGNMLVAEQENVKRVQLADKYL 345
>gi|357155667|ref|XP_003577196.1| PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase B,
chloroplastic-like [Brachypodium distachyon]
Length = 440
Score = 283 bits (723), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 147/333 (44%), Positives = 205/333 (61%), Gaps = 31/333 (9%)
Query: 10 GVIDPLFAGNFLGKDSDIVFDYRQKVTRS-----FEYLQGDYYIAPVFMASLC------- 57
G++D LF + V + +++ F+ YIAP FM L
Sbjct: 90 GIVDALFQAPMGDGTHEAVLSSYEYISQGLRQYDFDNTMDGLYIAPAFMDKLVVHLAKNF 149
Query: 58 -------------IWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRER 104
IWGGKGQGKSFQ EL+F MGI P++MSAGELES AGEP KLIR+R
Sbjct: 150 MTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQR 209
Query: 105 YRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIGQ 163
YR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ+V TLMN++D PT V +
Sbjct: 210 YREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAPTNVQLPG 268
Query: 164 DWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITK 223
+ + + R+PII TGNDFST+YAPLIRDGRMEKFYW P ED + + ++ DG+
Sbjct: 269 MYNKEE-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDGVPD 327
Query: 224 DEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVFT 283
+ V +V FP Q++DF+GALR+R YD + KW+ +I GVEN+ +L+ ++ P F
Sbjct: 328 EAVVRLVDMFPGQSIDFFGALRARVYDDEVRKWVGEI-GVENISKRLVNSKEGP--PKFE 384
Query: 284 PPEKTVEALLESGYSLLREQQLIMETKLSKEYM 316
P+ T+ L+E G+ L++EQ+ + +L+ +Y+
Sbjct: 385 QPKMTISKLMEYGHMLVQEQENVKRVQLADKYL 417
>gi|307136240|gb|ADN34076.1| ribulose bisphosphate carboxylase/oxygenase activase 1 [Cucumis
melo subsp. melo]
Length = 474
Score = 282 bits (722), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 153/340 (45%), Positives = 204/340 (60%), Gaps = 45/340 (13%)
Query: 10 GVIDPLFAGNFLGKDSDIVFDYRQKVTRSFEYLQGD------------YYIAPVFMASLC 57
G++D LF D V S+EYL +YIAP FM L
Sbjct: 90 GMVDSLFQAPTGAGTHDPVLS-------SYEYLSAGLRQYNLDNDVEGFYIAPAFMDKLV 142
Query: 58 --------------------IWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEP 97
IWGGKGQGKSFQ EL+F MGI P++MSAGELES AGEP
Sbjct: 143 VHITKNFMKLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEP 202
Query: 98 GKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNP 156
KLIR+RYR A+ +++ +GKM L IND+DAG GR G TQ TVNNQ+V TLMN++DNP
Sbjct: 203 AKLIRQRYREAADIIK-KGKMCALFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNP 261
Query: 157 TRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMY 216
T V + + + + R+PII TGNDFST+YAPLIRDGRMEKFYW P ED + + ++
Sbjct: 262 TNVQLPGMYNKEE-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIF 320
Query: 217 EKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKD 276
D I K+++ +V TFP Q++DF+GALR+R YD + KW + GVEN+ KL+ ++
Sbjct: 321 RSDNIPKEDIIKLVDTFPGQSIDFFGALRARVYDDEVRKWASSV-GVENIAKKLVNSKEG 379
Query: 277 KELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYM 316
P P+ T+E LLE G L++EQ+ + +L+ +Y+
Sbjct: 380 P--PTLEQPKMTLEKLLEYGNMLVQEQENVKRVQLADKYL 417
>gi|312281705|dbj|BAJ33718.1| unnamed protein product [Thellungiella halophila]
Length = 437
Score = 282 bits (722), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 149/318 (46%), Positives = 201/318 (63%), Gaps = 38/318 (11%)
Query: 32 RQKVTRSFEYL-QG-----------DYYIAPVFMASLC--------------------IW 59
V S+EY+ QG +YIAP FM L IW
Sbjct: 105 HHAVLSSYEYISQGLRQYNLDNMMDGFYIAPAFMDKLVVHITKNFLTLPNIKVPLILGIW 164
Query: 60 GGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMS 119
GGKGQGKSFQ EL+ MGI P++MSAGELES AGEP KLIR+RYR A+ +++ +GKM
Sbjct: 165 GGKGQGKSFQCELVMAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADMIK-KGKMC 223
Query: 120 CLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIF 178
CL IND+DAG GR G TQ TVNNQ+V TLMN++DNPT V + + + D R+PII
Sbjct: 224 CLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKED-NARVPIIV 282
Query: 179 TGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQAL 238
TGNDFST+YAPLIRDGRMEKFYW P ED + + ++ D I +++ ++V FP Q++
Sbjct: 283 TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDKINDEDIVTLVDQFPGQSI 342
Query: 239 DFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYS 298
DF+GALR+R YD + K+++ + GVE +G +L+ R+ PVF PE T+E L+E G
Sbjct: 343 DFFGALRARVYDDEVRKFVEGL-GVEKIGKRLVNSREGP--PVFEQPEMTLEKLMEYGNM 399
Query: 299 LLREQQLIMETKLSKEYM 316
L+ EQ+ + +L+ +Y+
Sbjct: 400 LVMEQENVKRVQLADQYL 417
>gi|12620883|gb|AAG61121.1|AF329935_1 ribulose-1,5-bisphosphate carboxylase/oxygenase activase 2
[Gossypium hirsutum]
Length = 435
Score = 282 bits (722), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 143/292 (48%), Positives = 193/292 (66%), Gaps = 26/292 (8%)
Query: 46 YYIAPVFMASLC--------------------IWGGKGQGKSFQTELIFQAMGIEPVIMS 85
+YIAP FM L IWGGKGQGKSFQ EL+F MGI P++MS
Sbjct: 92 FYIAPAFMDKLVVHISKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 151
Query: 86 AGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQI 144
AGELES AGEP KLIR+RYR A+ +++ +GKM L IND+DAG GR G TQ TVNNQ+
Sbjct: 152 AGELESGNAGEPAKLIRQRYREAADIIK-KGKMCALFINDLDAGAGRMGGTTQYTVNNQM 210
Query: 145 VVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPN 204
V TLMN++DNPT V + + + + R+PII TGNDFST+YAPLIRDGRMEKFYW P
Sbjct: 211 VNATLMNIADNPTNVQLPGMYNKEE-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT 269
Query: 205 LEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVE 264
+D + + ++ DG+ +++ +V TFP Q++DF+GALR+R YD + KWI ++ GV
Sbjct: 270 RDDRIGVCKGIFRTDGVRDEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEV-GVA 328
Query: 265 NLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYM 316
++G KL+ R+ P F P+ T+E LLE G L+ EQ+ + +L+ +Y+
Sbjct: 329 SVGKKLVNSREGP--PTFEQPKMTIEKLLEYGNMLVAEQENVKRVQLADKYL 378
>gi|94549022|gb|ABF38996.1| ribulose-1,5-bisphosphate carboxylase/oxygenase activase
[Pachysandra terminalis]
Length = 314
Score = 282 bits (722), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 138/260 (53%), Positives = 186/260 (71%), Gaps = 6/260 (2%)
Query: 58 IWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGK 117
IWGGKGQGKSFQ EL+F MGI P++MSAGELES AGEP KLIR+RYR A+ +++ +GK
Sbjct: 3 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIR-KGK 61
Query: 118 MSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPI 176
M CL IND+DAG GR G TQ TVNNQ+V TLMN++DNPT V + + + + R+P+
Sbjct: 62 MCCLFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEE-NPRVPV 120
Query: 177 IFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQ 236
I TGNDFST+YAPLIRDGRMEKFYW P +D + + +++ D + ++V IV TFP Q
Sbjct: 121 IVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCTGIFKADNVPPEDVVKIVDTFPGQ 180
Query: 237 ALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVFTPPEKTVEALLESG 296
++DF+GALR+R YD + KWI + GV+ +G KL+ R+ P F P+ TVE LLE G
Sbjct: 181 SIDFFGALRARVYDDEVRKWISGV-GVDKVGKKLVNSREGP--PTFEQPKMTVEKLLEYG 237
Query: 297 YSLLREQQLIMETKLSKEYM 316
L++EQ+ + +L+ +Y+
Sbjct: 238 NMLVQEQENVKRVQLADKYL 257
>gi|68565782|sp|Q7X9A0.1|RCA1_LARTR RecName: Full=Ribulose bisphosphate carboxylase/oxygenase activase
1, chloroplastic; Short=RA 1; Short=RuBisCO activase 1;
AltName: Full=RuBisCO activase alpha form; Flags:
Precursor
gi|32481065|gb|AAP83929.1| Rubisco activase alpha form precursor [Larrea tridentata]
Length = 476
Score = 282 bits (722), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 141/292 (48%), Positives = 192/292 (65%), Gaps = 26/292 (8%)
Query: 46 YYIAPVFMASLC--------------------IWGGKGQGKSFQTELIFQAMGIEPVIMS 85
+YIAP FM L IWGGKGQGKSFQ EL+F MGI P++MS
Sbjct: 131 FYIAPAFMDKLVVHITKNFLSLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 190
Query: 86 AGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQI 144
AGELES AGEP KLIR+RYR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ+
Sbjct: 191 AGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQM 249
Query: 145 VVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPN 204
V TLMN++DNPT V + + + + R+PII TGNDFST+YAPLIRDGRMEKFYW P
Sbjct: 250 VNATLMNIADNPTNVQLPGMYNKEE-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT 308
Query: 205 LEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVE 264
ED + + ++ D + D++ +V TFP Q++DF+GALR+R Y + KW+ ++ GV+
Sbjct: 309 REDRIGVCKGIFRTDNVADDDIVKLVDTFPGQSIDFFGALRARVYHDEVRKWVSEV-GVD 367
Query: 265 NLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYM 316
+G KL+ ++ P F P+ T++ LL G L++EQ+ + +L+ +YM
Sbjct: 368 TIGKKLVNSKEGP--PSFEQPKMTIDKLLGYGGMLVQEQENVKRVQLADKYM 417
>gi|410927500|gb|AFV93501.1| chloroplast ribulose bisphosphate carboxylase/oxygenase activase
alpha1, partial [Gossypium barbadense]
Length = 344
Score = 282 bits (722), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 143/292 (48%), Positives = 193/292 (66%), Gaps = 26/292 (8%)
Query: 46 YYIAPVFMASLC--------------------IWGGKGQGKSFQTELIFQAMGIEPVIMS 85
+YIAP FM L IWGGKGQGKSFQ EL+F MGI P++MS
Sbjct: 39 FYIAPAFMDKLVVHISKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 98
Query: 86 AGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQI 144
AGELES AGEP KLIR+RYR A+ +++ +GKM L IND+DAG GR G TQ TVNNQ+
Sbjct: 99 AGELESGNAGEPAKLIRQRYREAADIIK-KGKMCALFINDLDAGAGRMGGTTQYTVNNQM 157
Query: 145 VVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPN 204
V TLMN++DNPT V + + + + R+PII TGNDFST+YAPLIRDGRMEKFYW P
Sbjct: 158 VNATLMNIADNPTNVQLPGMYNKEE-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT 216
Query: 205 LEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVE 264
+D + + ++ DG+ +++ +V TFP Q++DF+GALR+R YD + KWI ++ GV
Sbjct: 217 RDDRIGVCKGIFRTDGVRDEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEV-GVA 275
Query: 265 NLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYM 316
++G KL+ R+ P F P+ T+E LLE G L+ EQ+ + +L+ +Y+
Sbjct: 276 SVGKKLVNSREGP--PTFEQPKMTIEKLLEYGNMLVAEQENVKRVQLADKYL 325
>gi|255635315|gb|ACU18011.1| unknown [Glycine max]
gi|290766487|gb|ADD60246.1| beta-form rubisco activase [Glycine max]
gi|290766491|gb|ADD60248.1| beta-form rubisco activase [Glycine max]
Length = 443
Score = 282 bits (721), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 153/332 (46%), Positives = 207/332 (62%), Gaps = 30/332 (9%)
Query: 10 GVIDPLF-AGNFLGKDSDIVFDYRQKVTRSFEYLQGD---YYIAPVFMASLC-------- 57
G++D LF A G ++ Y T +YL +YIAP FM L
Sbjct: 96 GLVDSLFQAPQDAGTHYAVMSSYEYLSTGLRQYLDNKMDGFYIAPAFMDKLVVHISKNFM 155
Query: 58 ------------IWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERY 105
IWGGKGQGKSFQ EL+F MGI P++MSAGELES AGEP KLIR+RY
Sbjct: 156 TLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRY 215
Query: 106 RTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIGQD 164
R A+ +++ +GKM L IND+DAG GR G TQ TVNNQ+V TLMN++DNPT V +
Sbjct: 216 REAADMIK-KGKMCALFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGM 274
Query: 165 WRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITKD 224
+ + + R+PII TGNDFST+YAPLIRDGRMEKFYW P ED + + ++ DGI +
Sbjct: 275 YNKEE-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCTGIFRTDGIPEQ 333
Query: 225 EVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVFTP 284
++ +V TFP Q++DF+GALR+R YD + KWI + GV+++G KL+ + P F
Sbjct: 334 DIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGV-GVDSVGKKLVNSKDGP--PTFEQ 390
Query: 285 PEKTVEALLESGYSLLREQQLIMETKLSKEYM 316
P+ T+E LL G L++EQ+ + +L+ +Y+
Sbjct: 391 PKMTLEKLLLYGNMLVQEQENVKRVQLADKYL 422
>gi|356569334|ref|XP_003552857.1| PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic-like [Glycine max]
Length = 431
Score = 281 bits (720), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 153/332 (46%), Positives = 207/332 (62%), Gaps = 30/332 (9%)
Query: 10 GVIDPLF-AGNFLGKDSDIVFDYRQKVTRSFEYLQGD---YYIAPVFMASLC-------- 57
G++D LF A G ++ Y T +YL +YIAP FM L
Sbjct: 84 GLVDSLFQAPQDAGTHYAVMSSYEYLSTGLRQYLDNKMDGFYIAPAFMDKLVVHISKNFM 143
Query: 58 ------------IWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERY 105
IWGGKGQGKSFQ EL+F MGI P++MSAGELES AGEP KLIR+RY
Sbjct: 144 TLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRY 203
Query: 106 RTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIGQD 164
R A+ +++ +GKM L IND+DAG GR G TQ TVNNQ+V TLMN++DNPT V +
Sbjct: 204 REAADMIK-KGKMCALFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGM 262
Query: 165 WRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITKD 224
+ + + R+PII TGNDFST+YAPLIRDGRMEKFYW P ED + + ++ DGI +
Sbjct: 263 YNKEE-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCTGIFRTDGIPEQ 321
Query: 225 EVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVFTP 284
++ +V TFP Q++DF+GALR+R YD + KWI + GV+++G KL+ + P F
Sbjct: 322 DIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGV-GVDSVGKKLVNSKDGP--PTFEQ 378
Query: 285 PEKTVEALLESGYSLLREQQLIMETKLSKEYM 316
P+ T+E LL G L++EQ+ + +L+ +Y+
Sbjct: 379 PKMTLEKLLLYGNMLVQEQENVKRVQLADKYL 410
>gi|13430338|gb|AAK25801.1|AF338240_1 rubisco activase [Zantedeschia aethiopica]
Length = 435
Score = 281 bits (720), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 152/333 (45%), Positives = 208/333 (62%), Gaps = 31/333 (9%)
Query: 10 GVIDPLFAGNFLGKDSDIV---FDYRQKVTRSF--EYLQGDYYIAPVFMASLC------- 57
G++D LF + V ++Y RSF + YIAP FM L
Sbjct: 88 GMVDSLFQAPMGDGTHNPVLSSYEYISTGLRSFNLDNTVNGLYIAPAFMDKLVVHITKNF 147
Query: 58 -------------IWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRER 104
IWGGKGQGKSFQ EL+F MGI P++MSAGELES AGEP KLIR+R
Sbjct: 148 MNLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQR 207
Query: 105 YRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIGQ 163
YR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ+V TLMN++DNPT V +
Sbjct: 208 YREAADIIR-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPG 266
Query: 164 DWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITK 223
+ + + R+PII TGNDFST+YAPLIRDGRMEKFYW P +D + + ++ D + K
Sbjct: 267 MYNKQE-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRVGVCTGIFRSDNVPK 325
Query: 224 DEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVFT 283
++V +V TFP Q++DF+GALR+R YD + KWI +I GV+ +G +L+ + P F
Sbjct: 326 EDVIKLVDTFPGQSIDFFGALRARVYDDEVRKWIAEI-GVDGVGKRLVNSLEGP--PTFA 382
Query: 284 PPEKTVEALLESGYSLLREQQLIMETKLSKEYM 316
P+ T++ LLE G L++EQ+ + +L+ +Y+
Sbjct: 383 QPKMTLDKLLEYGNMLVQEQENVKRVQLADKYL 415
>gi|3914605|sp|Q40281.1|RCA_MALDO RecName: Full=Ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic; Short=RA; Short=RuBisCO activase; Flags:
Precursor
gi|415852|emb|CAA79857.1| ribulose-1,5-bisphosphate carboxylase/oxygenase activase [Malus x
domestica]
Length = 437
Score = 281 bits (720), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 143/292 (48%), Positives = 193/292 (66%), Gaps = 26/292 (8%)
Query: 46 YYIAPVFMASLC--------------------IWGGKGQGKSFQTELIFQAMGIEPVIMS 85
YYIAP FM L IWGGKGQGKSFQ EL+F M I P++MS
Sbjct: 131 YYIAPAFMDKLVVHITKNFMTLPNMKVPLILGIWGGKGQGKSFQCELVFAKMRISPIMMS 190
Query: 86 AGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQI 144
AGELES AGEP KLIR+RYR A+ +++ +GKM L IND+DAG GR G TQ TVNNQ+
Sbjct: 191 AGELESGNAGEPAKLIRQRYREAADIIR-KGKMCALFINDLDAGAGRLGGTTQYTVNNQM 249
Query: 145 VVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPN 204
V TLMN++DNPT V + + + + R+PII TGNDFST+YAPLIRDGRMEKFYW P
Sbjct: 250 VNATLMNIADNPTNVQLPGMYNKEE-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT 308
Query: 205 LEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVE 264
ED + + ++ D + K+++ +V TFP Q++DF+GALR+R YD + KWI + GV+
Sbjct: 309 REDRIGVCIGIFRSDNVAKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWITGV-GVD 367
Query: 265 NLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYM 316
++G KL+ ++ P F P+ T+E LLE G L++EQ+ + +L+ +Y+
Sbjct: 368 SIGKKLVNSKEGP--PTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADKYL 417
>gi|358248528|ref|NP_001240152.1| ribulose bisphosphate carboxylase/oxygenase activase 1,
chloroplastic-like [Glycine max]
gi|290766479|gb|ADD60242.1| alpha-form rubisco activase [Glycine max]
gi|290766489|gb|ADD60247.1| alpha-form rubisco activase [Glycine max]
Length = 478
Score = 281 bits (719), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 143/293 (48%), Positives = 194/293 (66%), Gaps = 26/293 (8%)
Query: 46 YYIAPVFMASLC--------------------IWGGKGQGKSFQTELIFQAMGIEPVIMS 85
+YIAP FM L IWGGKGQGKSFQ EL+F MGI P++MS
Sbjct: 135 FYIAPAFMDKLVVHISKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 194
Query: 86 AGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQI 144
AGELES AGEP KLIR+RYR A+ +++ +GKM L IND+DAG GR G TQ TVNNQ+
Sbjct: 195 AGELESGNAGEPAKLIRQRYREAADMIK-KGKMCALFINDLDAGAGRLGGTTQYTVNNQM 253
Query: 145 VVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPN 204
V TLMN++DNPT V + + + + R+PII TGNDFST+YAPLIRDGRMEKFYW P
Sbjct: 254 VNATLMNIADNPTNVQLPGMYNKEE-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT 312
Query: 205 LEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVE 264
+D + + + ++ D + KD++ +V TFP Q++DF+GALR+R YD + KWI + GV+
Sbjct: 313 RDDRVGVCNGIFRTDNVPKDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI-SVVGVD 371
Query: 265 NLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYMK 317
+G KL+ ++ P F P+ T+ LLE G L++EQ+ + +L+ +Y+K
Sbjct: 372 FIGKKLVNSKEGP--PTFDQPKMTLSKLLEYGNMLVQEQENVKRVQLADKYLK 422
>gi|13430336|gb|AAK25800.1|AF338239_1 rubisco activase [Zantedeschia aethiopica]
Length = 426
Score = 281 bits (719), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 152/333 (45%), Positives = 208/333 (62%), Gaps = 31/333 (9%)
Query: 10 GVIDPLFAGNFLGKDSDIV---FDYRQKVTRSF--EYLQGDYYIAPVFMASLC------- 57
G++D LF + V ++Y RSF + YIAP FM L
Sbjct: 42 GMVDSLFQAPMGDGTHNPVLSSYEYISTGLRSFNLDNTVNGLYIAPAFMDKLVVHITKNF 101
Query: 58 -------------IWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRER 104
IWGGKGQGKSFQ EL+F MGI P++MSAGELES AGEP KLIR+R
Sbjct: 102 MNLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQR 161
Query: 105 YRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIGQ 163
YR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ+V TLMN++DNPT V +
Sbjct: 162 YREAADIIR-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPG 220
Query: 164 DWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITK 223
+ + + R+PII TGNDFST+YAPLIRDGRMEKFYW P +D + + ++ D + K
Sbjct: 221 MYNKQE-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRVGVCTGIFRSDNVPK 279
Query: 224 DEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVFT 283
++V +V TFP Q++DF+GALR+R YD + KWI +I GV+ +G +L+ + P F
Sbjct: 280 EDVIKLVDTFPGQSIDFFGALRARVYDDEVRKWIAEI-GVDGVGKRLVNSLEGP--PTFA 336
Query: 284 PPEKTVEALLESGYSLLREQQLIMETKLSKEYM 316
P+ T++ LLE G L++EQ+ + +L+ +Y+
Sbjct: 337 QPKMTLDKLLEYGNMLVQEQENVKRVQLADKYL 369
>gi|363806750|ref|NP_001242531.1| ribulose bisphosphate carboxylase/oxygenase activase 1,
chloroplastic-like [Glycine max]
gi|290766483|gb|ADD60244.1| rubisco activase [Glycine max]
Length = 478
Score = 281 bits (719), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 147/315 (46%), Positives = 197/315 (62%), Gaps = 38/315 (12%)
Query: 35 VTRSFEYLQ------------GDYYIAPVFMASLC--------------------IWGGK 62
V SFEYL +YIAP FM L IWGGK
Sbjct: 112 VMSSFEYLSTGLKQYNLDNNMDGFYIAPAFMDKLVAHITKNFMTLPNIKVPLILGIWGGK 171
Query: 63 GQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLM 122
GQGKSFQ EL+F MGI P++M AGELES AGEP KLIR+RYR A+ ++ ++GKM CL
Sbjct: 172 GQGKSFQCELVFAKMGINPIMMGAGELESGNAGEPAKLIRQRYREAADII-SKGKMCCLF 230
Query: 123 INDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGN 181
IND+D G GR G TQ TVNNQ+V TLMN++DNPT V + + + + R+PII TGN
Sbjct: 231 INDLDVGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQE-NPRVPIIVTGN 289
Query: 182 DFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFY 241
DFST+YAPLIRDGRMEKFYW P +D + + ++ D + +DE+ +V TFP Q++DF+
Sbjct: 290 DFSTLYAPLIRDGRMEKFYWAPTRDDRVGVCKGIFRTDNVPEDEIVKLVDTFPGQSIDFF 349
Query: 242 GALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLR 301
GALR+R YD + KWI + GV+ +G KL+ ++ P F P+ T+ LLE G L++
Sbjct: 350 GALRARVYDDEVRKWISGV-GVDLIGKKLVNSKEGP--PTFDQPKMTLSKLLEYGNMLVQ 406
Query: 302 EQQLIMETKLSKEYM 316
EQ+ + +L+ +Y+
Sbjct: 407 EQENVKRVQLADKYL 421
>gi|358249078|ref|NP_001240245.1| ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic-like [Glycine max]
gi|290766485|gb|ADD60245.1| rubisco activase [Glycine max]
Length = 443
Score = 281 bits (718), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 153/332 (46%), Positives = 206/332 (62%), Gaps = 30/332 (9%)
Query: 10 GVIDPLF-AGNFLGKDSDIVFDYRQKVTRSFEYLQGD---YYIAPVFMASLC-------- 57
G++D LF A G ++ Y T +YL + +YIAP FM L
Sbjct: 96 GLVDSLFQAPQDAGTHYAVMSSYEYLSTGLRQYLDNNMDGFYIAPAFMDKLVVHITKNFM 155
Query: 58 ------------IWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERY 105
IWGGKGQGKSFQ EL+F MGI P++MSAGELES AGEP KLIR+RY
Sbjct: 156 TLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRY 215
Query: 106 RTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIGQD 164
R A+ +++ +GKM L IND+DAG GR G TQ TVNNQ+V TLMN++DNPT V +
Sbjct: 216 REAADLIK-KGKMCALFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGM 274
Query: 165 WRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITKD 224
+ + + R+PII TGNDFST+YAPLIRDGRMEKFYW P +D + + ++ D I +
Sbjct: 275 YNKEE-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCTGIFRTDSIPEQ 333
Query: 225 EVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVFTP 284
+V IV TFP Q++DF+GALR+R YD + KWI + GV+ +G KL+ + P F
Sbjct: 334 DVVKIVDTFPGQSIDFFGALRARVYDDEVRKWISGV-GVDGIGKKLVNSKDGP--PTFEQ 390
Query: 285 PEKTVEALLESGYSLLREQQLIMETKLSKEYM 316
P+ T+E LL G L++EQ+ + +L+ +Y+
Sbjct: 391 PKMTLEKLLTYGNMLVQEQENVKRVQLADKYL 422
>gi|13430332|gb|AAK25798.1|AF338237_1 rubisco activase, partial [Zantedeschia aethiopica]
Length = 436
Score = 281 bits (718), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 152/333 (45%), Positives = 208/333 (62%), Gaps = 31/333 (9%)
Query: 10 GVIDPLFAGNFLGKDSDIV---FDYRQKVTRSF--EYLQGDYYIAPVFMASLC------- 57
G++D LF + V ++Y RSF + YIAP FM L
Sbjct: 52 GMVDSLFQAPMGDGTHNPVLSSYEYISTGLRSFNLDNTVNGLYIAPAFMDKLVVHITKNF 111
Query: 58 -------------IWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRER 104
IWGGKGQGKSFQ EL+F MGI P++MSAGELES AGEP KLIR+R
Sbjct: 112 MNLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQR 171
Query: 105 YRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIGQ 163
YR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ+V TLMN++DNPT V +
Sbjct: 172 YREAADIIR-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPG 230
Query: 164 DWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITK 223
+ + + R+PII TGNDFST+YAPLIRDGRMEKFYW P +D + + ++ D + K
Sbjct: 231 MYNKQE-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRVGVCTGIFRSDNVPK 289
Query: 224 DEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVFT 283
++V +V TFP Q++DF+GALR+R YD + KWI +I GV+ +G +L+ + P F
Sbjct: 290 EDVIKLVDTFPGQSIDFFGALRARVYDDEVRKWIAEI-GVDGVGKRLVNSLEGP--PTFA 346
Query: 284 PPEKTVEALLESGYSLLREQQLIMETKLSKEYM 316
P+ T++ LLE G L++EQ+ + +L+ +Y+
Sbjct: 347 QPKMTLDKLLEYGNMLVQEQENVKRVQLADKYL 379
>gi|337263422|gb|AEI69347.1| chloroplast rubisco activase [Ophiopogon japonicus]
Length = 435
Score = 281 bits (718), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 146/333 (43%), Positives = 205/333 (61%), Gaps = 31/333 (9%)
Query: 10 GVIDPLFAGNFLGKDSDIVFDYRQKVTRSF-----EYLQGDYYIAPVFMASLC------- 57
G++DPLF + V + + +++ E +YIAP FM L
Sbjct: 90 GLVDPLFQAPMGDGTHEAVLNSYEYISQGLRDYGMENKMDGFYIAPEFMDKLVVHITKNY 149
Query: 58 -------------IWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRER 104
IWGGKGQGK+FQ EL+F+ MGI P++MSAGELES AGEP KLIR+R
Sbjct: 150 MDLPNIKVPLILGIWGGKGQGKTFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQR 209
Query: 105 YRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIGQ 163
YR A+ ++ +GKM CL IND+DAG GR G TQ TVNNQ+V TLMN++DNPT V +
Sbjct: 210 YREAADIIA-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPG 268
Query: 164 DWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITK 223
+ + + R+PII TGNDFST+YAPLIRDGRMEKFYW P D + + ++ D +
Sbjct: 269 MYNKQE-NARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRSDRIGVCTGIFMTDNVAV 327
Query: 224 DEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVFT 283
++ +V FP Q++DF+GALR+R YD + KWI DI GV+ +G +L+ + P F
Sbjct: 328 QDIVKLVDAFPGQSIDFFGALRARVYDDEVRKWISDI-GVDKVGKRLVNSAEGA--PTFE 384
Query: 284 PPEKTVEALLESGYSLLREQQLIMETKLSKEYM 316
P+ T+E L++ G L++EQ+ + +L+ +Y+
Sbjct: 385 QPKMTLEKLMDYGNMLVQEQENVKRVQLADKYL 417
>gi|10720253|sp|Q42450.1|RCAB_HORVU RecName: Full=Ribulose bisphosphate carboxylase/oxygenase activase
B, chloroplastic; Short=RA B; Short=RuBisCO activase B;
Flags: Precursor
gi|167093|gb|AAA62703.1| ribulose 1,5-bisphosphate carboxylase activase [Hordeum vulgare]
gi|167095|gb|AAA63162.1| ribulose 1,5-bisphosphate carboxylase activase [Hordeum vulgare
subsp. vulgare]
Length = 425
Score = 280 bits (717), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 149/333 (44%), Positives = 207/333 (62%), Gaps = 32/333 (9%)
Query: 10 GVIDPLFAGNFLGKDSDIV---FDYRQKVTRSFEY--LQGDYYIAPVFMASLC------- 57
G++D LF + + ++Y + R +++ YIAP FM L
Sbjct: 78 GIVDSLFQAPMGDGTHEAILSSYEYISQGLRKYDFDNTMDGLYIAPAFMDKLIVHLAKNF 137
Query: 58 -------------IWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRER 104
IWGGKGQGKSFQ EL+F MGI P++MSAGELES GEP KLIR+R
Sbjct: 138 MTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGN-GEPAKLIRQR 196
Query: 105 YRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIGQ 163
YR A+ ++ N+GKM CL IND+DAG GR G TQ TVNNQ+V TLMN++D PT V +
Sbjct: 197 YREAADII-NKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAPTNVQLPG 255
Query: 164 DWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITK 223
+ + + R+PII TGNDFST+YAPLIRDGRMEKFYW P ED + + ++ D +
Sbjct: 256 MYNKEE-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDNVPD 314
Query: 224 DEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVFT 283
+ V +V TFP Q++DF+GALR+R YD + KW+ +I GVEN+ +L+ R+ P F
Sbjct: 315 EAVVRLVDTFPGQSIDFFGALRARVYDDEVRKWVGEI-GVENISKRLVNSREGP--PTFD 371
Query: 284 PPEKTVEALLESGYSLLREQQLIMETKLSKEYM 316
P+ T+E L+E G+ L++EQ+ + +L+ +Y+
Sbjct: 372 QPKMTIEKLMEYGHMLVQEQENVKRVQLADKYL 404
>gi|23308421|gb|AAN18180.1| At2g39730/T5I7.3 [Arabidopsis thaliana]
Length = 474
Score = 280 bits (717), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 142/292 (48%), Positives = 194/292 (66%), Gaps = 26/292 (8%)
Query: 46 YYIAPVFMASLC--------------------IWGGKGQGKSFQTELIFQAMGIEPVIMS 85
+YIAP FM L IWGGKGQGKSFQ EL+ MGI P++MS
Sbjct: 131 FYIAPAFMDKLVVHITKNFLTLPNIKVPLILGIWGGKGQGKSFQCELVMAKMGINPIMMS 190
Query: 86 AGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQI 144
AGELES AGEP KLIR+RYR A+ +++ +GKM CL+IND+DAG GR G TQ TVNNQ+
Sbjct: 191 AGELESGNAGEPAKLIRQRYREAADLIK-KGKMCCLLINDLDAGAGRMGGTTQYTVNNQM 249
Query: 145 VVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPN 204
V TLMN++DNPT V + + + + R+PII TGNDFST+YAPLIRDGRMEKFYW P
Sbjct: 250 VNATLMNIADNPTNVQLPGMYNKEE-NARVPIICTGNDFSTLYAPLIRDGRMEKFYWAPT 308
Query: 205 LEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVE 264
ED + + ++ D I +++ ++V FP+Q++DF+GALR+R YD + K+++ + GVE
Sbjct: 309 REDRIGVCKGIFRTDKIKDEDIVTLVDQFPDQSIDFFGALRARVYDDEVRKFVESL-GVE 367
Query: 265 NLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYM 316
+G +L+ R+ PVF PE T E L+E G L+ EQ+ + +L++ Y+
Sbjct: 368 KIGKRLVNSREGP--PVFEQPEMTYEKLMEYGNMLVMEQENVKRVQLAETYL 417
>gi|266893|sp|Q01587.1|RCA_CUCSA RecName: Full=Ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic; Short=RA; Short=RuBisCO activase; Flags:
Precursor
gi|18284|emb|CAA47906.1| rubisco activase [Cucumis sativus]
Length = 413
Score = 280 bits (717), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 151/328 (46%), Positives = 201/328 (61%), Gaps = 31/328 (9%)
Query: 10 GVIDPLFAGNFLGKDSDIV---FDYRQKVTRSFEYLQG--DYYIAPVFMASLCI------ 58
G+ DPLF + V ++Y R + Y +YIAP FM L +
Sbjct: 87 GLADPLFQAPMGTGTHNAVLSSYEYISAGLRDYSYDNNVDGFYIAPAFMDKLTVHIVKNF 146
Query: 59 --------------WGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRER 104
WGGKGQGKSFQ EL+F MGI P++MSAGELES AGEP KLIR+R
Sbjct: 147 LTLPNIKVPLILGVWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQR 206
Query: 105 YRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIGQ 163
YR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ+V TLMN++DNPT V +
Sbjct: 207 YREAADIIK-KGKMCCLFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPG 265
Query: 164 DWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITK 223
+ + + R+PII TGNDFST+YAPLIRDGRM+KFYW P ED + I ++ DG+
Sbjct: 266 MYNKEE-NPRVPIIVTGNDFSTLYAPLIRDGRMDKFYWAPTREDRIGICTGIFRTDGVPF 324
Query: 224 DEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVFT 283
+++ +V TFP Q++DF+GALR+R YD + KW + GVE +G L+ ++ P F
Sbjct: 325 EDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWAVGV-GVERIGRNLVNSKESP--PTFD 381
Query: 284 PPEKTVEALLESGYSLLREQQLIMETKL 311
P+ T+E LLE G L+ EQ+ + KL
Sbjct: 382 QPKMTIEKLLEYGNMLVMEQENVKRVKL 409
>gi|407911668|gb|AFU50382.1| chloroplast ribulose bisphosphate carboxylase/oxygenase activase
large isoform a [Ipomoea batatas]
Length = 484
Score = 280 bits (717), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 149/334 (44%), Positives = 205/334 (61%), Gaps = 31/334 (9%)
Query: 10 GVIDPLFAGNFLGKDSDIVFDYRQKVTRSFEYLQGD-----YYIAPVFMASLCI------ 58
G++D LF V + +++ D +YIAP FM L +
Sbjct: 100 GLVDSLFQAPMGTGTHHAVLSSYEYISQGLREYNIDNTLDGFYIAPAFMDKLVVHITKNF 159
Query: 59 --------------WGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRER 104
WGGKGQGKSFQ EL+F+ MGI P++MSAGELES AGEP KLIR+R
Sbjct: 160 LKLPNIKIPLILGVWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQR 219
Query: 105 YRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIGQ 163
YR A+++++ +G M L IND+DAG GR G TQ TVNNQ+V TLMN++DNPT V +
Sbjct: 220 YREAAEIIR-KGNMCVLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPG 278
Query: 164 DWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITK 223
+ + + R+PII TGNDFST+YAPLIRDGRMEKFYW P ED + + ++ DG+
Sbjct: 279 MYNKQE-NARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDGVPD 337
Query: 224 DEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVFT 283
+ V +V TFP Q++DF+GALR+R YD + K+I I GV+ + +LL R P F
Sbjct: 338 EHVVKLVDTFPGQSIDFFGALRARVYDDEVRKFIASI-GVDAVNERLLNSRDGP--PKFD 394
Query: 284 PPEKTVEALLESGYSLLREQQLIMETKLSKEYMK 317
P+ T+E LL+ GY L++EQ+ + +L+ +Y+K
Sbjct: 395 QPKMTIEKLLQYGYMLVQEQENVKRVQLADKYLK 428
>gi|13430334|gb|AAK25799.1|AF338238_1 rubisco activase [Zantedeschia aethiopica]
Length = 334
Score = 280 bits (716), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 143/291 (49%), Positives = 193/291 (66%), Gaps = 26/291 (8%)
Query: 47 YIAPVFMASLC--------------------IWGGKGQGKSFQTELIFQAMGIEPVIMSA 86
YIAP FM L IWGGKGQGKSFQ EL+F MGI P++MSA
Sbjct: 29 YIAPAFMDKLVVHITKNFMNLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 88
Query: 87 GELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIV 145
GELES AGEP KLIR+RYR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ+V
Sbjct: 89 GELESGNAGEPAKLIRQRYREAADIIR-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMV 147
Query: 146 VGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNL 205
TLMN++DNPT V + + + + R+PII TGNDFST+YAPLIRDGRMEKFYW P
Sbjct: 148 NATLMNIADNPTNVQLPGMYNKQE-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTR 206
Query: 206 EDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVEN 265
+D + + ++ D + K++V +V TFP Q++DF+GALR+R YD + KWI +I GV+
Sbjct: 207 DDRVGVCTGIFRSDNVPKEDVIKLVDTFPGQSIDFFGALRARVYDDEVRKWIAEI-GVDG 265
Query: 266 LGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYM 316
+G +L+ + P F P+ T++ LLE G L++EQ+ + +L+ +Y+
Sbjct: 266 VGKRLVNSLEGP--PTFAQPKMTLDKLLEYGNMLVQEQENVKRVQLADKYL 314
>gi|407911670|gb|AFU50383.1| chloroplast ribulose bisphosphate carboxylase/oxygenase activase
large isoform b [Ipomoea batatas]
Length = 484
Score = 280 bits (716), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 143/293 (48%), Positives = 193/293 (65%), Gaps = 26/293 (8%)
Query: 46 YYIAPVFMASLCI--------------------WGGKGQGKSFQTELIFQAMGIEPVIMS 85
+YIAP FM L + WGGKGQGKSFQ EL+F+ MGI P++MS
Sbjct: 141 FYIAPAFMDKLVVHITKNFLKLPNIKIPLILGVWGGKGQGKSFQCELVFRKMGINPIMMS 200
Query: 86 AGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQI 144
AGELES AGEP KLIR+RYR A+++++ +G M L IND+DAG GR G TQ TVNNQ+
Sbjct: 201 AGELESGNAGEPAKLIRQRYREAAEIIR-KGNMCVLFINDLDAGAGRMGGTTQYTVNNQM 259
Query: 145 VVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPN 204
V TLMN++DNPT V + + + + R+PII TGNDFST+YAPLIRDGRMEKFYW P
Sbjct: 260 VNATLMNIADNPTNVQLPGMYNKQE-NARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT 318
Query: 205 LEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVE 264
ED + + ++ DG+ + V +V TFP Q++DF+GALR+R YD + K+I I GV+
Sbjct: 319 REDRIGVCKGIFRTDGVPDEHVVKLVDTFPGQSIDFFGALRARVYDDEVRKFIASI-GVD 377
Query: 265 NLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYMK 317
+ +LL R P F P+ T+E LL+ GY L++EQ+ + +L+ +Y+K
Sbjct: 378 AVNERLLNSRDGP--PKFDQPKMTIEKLLQYGYMLVQEQENVKRVQLADKYLK 428
>gi|407911664|gb|AFU50380.1| chloroplast ribulose bisphosphate carboxylase/oxygenase activase
large isoform [Ipomoea batatas]
gi|407911672|gb|AFU50384.1| chloroplast ribulose bisphosphate carboxylase/oxygenase activase
large isoform c [Ipomoea batatas]
Length = 484
Score = 280 bits (716), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 143/293 (48%), Positives = 193/293 (65%), Gaps = 26/293 (8%)
Query: 46 YYIAPVFMASLCI--------------------WGGKGQGKSFQTELIFQAMGIEPVIMS 85
+YIAP FM L + WGGKGQGKSFQ EL+F+ MGI P++MS
Sbjct: 141 FYIAPAFMDKLVVHITKNFLKLPNIKIPLILGVWGGKGQGKSFQCELVFRKMGINPIMMS 200
Query: 86 AGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQI 144
AGELES AGEP KLIR+RYR A+++++ +G M L IND+DAG GR G TQ TVNNQ+
Sbjct: 201 AGELESGNAGEPAKLIRQRYREAAEIIR-KGNMCVLFINDLDAGAGRMGGTTQYTVNNQM 259
Query: 145 VVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPN 204
V TLMN++DNPT V + + + + R+PII TGNDFST+YAPLIRDGRMEKFYW P
Sbjct: 260 VNATLMNIADNPTNVQLPGMYNKQE-NARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT 318
Query: 205 LEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVE 264
ED + + ++ DG+ + V +V TFP Q++DF+GALR+R YD + K+I I GV+
Sbjct: 319 REDRIGVCKGIFRTDGVPDEHVVKLVDTFPGQSIDFFGALRARVYDDEVRKFIASI-GVD 377
Query: 265 NLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYMK 317
+ +LL R P F P+ T+E LL+ GY L++EQ+ + +L+ +Y+K
Sbjct: 378 AVNERLLNSRDGP--PKFDQPKMTIEKLLQYGYMLVQEQENVKRVQLADKYLK 428
>gi|224284512|gb|ACN39989.1| unknown [Picea sitchensis]
Length = 368
Score = 280 bits (716), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 150/328 (45%), Positives = 202/328 (61%), Gaps = 31/328 (9%)
Query: 10 GVIDPLFAGNFLGKDSDIV---FDYRQKVTRSFEY--LQGDYYIAPVFMASLC------- 57
G +D LF ++V +DY R++++ YYIAP FM L
Sbjct: 8 GKVDSLFQAPMGSGTHNVVMSTYDYISTAQRTYDFDNTMDGYYIAPSFMDKLLVHISKNF 67
Query: 58 -------------IWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRER 104
IWGGKGQGKSFQ EL+F +GI P++MSAGELES AGEP KL+R+R
Sbjct: 68 MNLPNIKVPLILGIWGGKGQGKSFQCELVFAKLGINPIMMSAGELESGDAGEPAKLLRKR 127
Query: 105 YRTASQVVQNQGKMSCLMINDIDAGLGRFGNT-QMTVNNQIVVGTLMNLSDNPTRVSIGQ 163
YR AS +V+ +GKM L IND+DAG GR G+T Q TVNNQ+V TLMN++DNPT V +
Sbjct: 128 YREASDIVK-KGKMCVLFINDLDAGAGRMGSTTQYTVNNQMVNATLMNIADNPTNVQLPG 186
Query: 164 DWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITK 223
+ + D R+PI+ TGNDFST+YAPLIRDGRMEKFYW P +D + + ++ D +
Sbjct: 187 MYNKQD-NPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCQGIFRADNVHP 245
Query: 224 DEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVFT 283
D+V +V TFP Q++DF+GALR+R YD + KW+ G++N+G KL+ ++ P F
Sbjct: 246 DDVVRLVDTFPGQSIDFFGALRARVYDDEVRKWVAGT-GIQNIGKKLINSKEGP--PTFE 302
Query: 284 PPEKTVEALLESGYSLLREQQLIMETKL 311
P T+E LLE G L+ EQ + +L
Sbjct: 303 KPAMTIEKLLEYGNMLVGEQDNVKRVQL 330
>gi|225449432|ref|XP_002282979.1| PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic [Vitis vinifera]
Length = 438
Score = 280 bits (716), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 141/292 (48%), Positives = 192/292 (65%), Gaps = 26/292 (8%)
Query: 46 YYIAPVFMASLC--------------------IWGGKGQGKSFQTELIFQAMGIEPVIMS 85
+YIAP FM L IWGGKGQGKSFQ EL+F MGI P++MS
Sbjct: 132 FYIAPAFMDKLVVHITKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFSKMGINPIMMS 191
Query: 86 AGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQI 144
AGELES AGEP KLIR+RYR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ+
Sbjct: 192 AGELESGNAGEPAKLIRQRYREAADIIR-KGKMCCLFINDLDAGAGRLGGTTQYTVNNQM 250
Query: 145 VVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPN 204
V TLMN++DNPT V + + + + R+P+I TGNDFST+YAPLIRDGRMEKFYW P
Sbjct: 251 VNATLMNIADNPTNVQLPGMYNKEE-NPRVPVIVTGNDFSTLYAPLIRDGRMEKFYWAPT 309
Query: 205 LEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVE 264
ED + + ++ D + +++ +V TFP Q++DF+GALR+R YD + WI I GV+
Sbjct: 310 REDRIGVCTGIFRTDNVPVEDIVKLVDTFPGQSIDFFGALRARVYDDMVRDWIAGI-GVD 368
Query: 265 NLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYM 316
+G +L+ ++ P F P+ T+E LLE G L++EQ+ + +L+ +Y+
Sbjct: 369 TVGKRLVNSKEGP--PSFEQPKMTLEKLLEYGSMLVQEQENVKRVQLADKYL 418
>gi|15450379|gb|AAK96483.1| At2g39730/T5I7.3 [Arabidopsis thaliana]
Length = 474
Score = 280 bits (715), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 142/292 (48%), Positives = 193/292 (66%), Gaps = 26/292 (8%)
Query: 46 YYIAPVFMASLC--------------------IWGGKGQGKSFQTELIFQAMGIEPVIMS 85
+YIAP FM L IWGGKGQGKSFQ EL+ MGI P++MS
Sbjct: 131 FYIAPAFMDKLVVHITKNFLTLPNIKVPLILGIWGGKGQGKSFQCELVMAKMGINPIMMS 190
Query: 86 AGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQI 144
AGELES AGEP KLIR+RYR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ+
Sbjct: 191 AGELESGNAGEPAKLIRQRYREAADLIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQM 249
Query: 145 VVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPN 204
V TLMN++DNPT V + + + + R+PII TGNDFST+YAPLIRDGRMEKFYW P
Sbjct: 250 VNATLMNIADNPTNVQLPGMYNKEE-NARVPIICTGNDFSTLYAPLIRDGRMEKFYWAPT 308
Query: 205 LEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVE 264
ED + + ++ D I +++ ++V FP+Q++DF+GALR+R YD + K+++ + GVE
Sbjct: 309 REDRIGVCKGIFRTDKIKDEDIVTLVDQFPDQSIDFFGALRARVYDDEVRKFVESL-GVE 367
Query: 265 NLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYM 316
+G +L+ R+ PVF PE T E L+E G L+ EQ+ + +L++ Y+
Sbjct: 368 KIGKRLVNSREGP--PVFEQPEMTYEKLMEYGNMLVMEQENVKRVQLAETYL 417
>gi|293331415|ref|NP_001168488.1| uncharacterized protein LOC100382265 [Zea mays]
gi|223948617|gb|ACN28392.1| unknown [Zea mays]
gi|413920135|gb|AFW60067.1| hypothetical protein ZEAMMB73_533261 [Zea mays]
Length = 463
Score = 280 bits (715), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 148/334 (44%), Positives = 207/334 (61%), Gaps = 33/334 (9%)
Query: 10 GVIDPLFAGNFLGKDSDIV----FDYRQKVTR--SFEYLQGDYYIAPVFMASLC------ 57
G +DPLF +G + + +DY + R S + + YYIAP FM L
Sbjct: 84 GRVDPLFQAP-MGDGTHVAVLSSYDYISQGLRHYSLDNMMDGYYIAPAFMDKLVVHIAKN 142
Query: 58 --------------IWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRE 103
IWGGKGQGKSFQ EL+ MGI P++MSAGELES AGEP KLIR+
Sbjct: 143 FMPLPNIKVPLILGIWGGKGQGKSFQCELVLAKMGINPIVMSAGELESGNAGEPAKLIRQ 202
Query: 104 RYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIG 162
RYR A+ +++ +GKM L IND+DAG GR G TQ TVNNQ+V TLMN++DNPT V +
Sbjct: 203 RYREAADMIK-KGKMCVLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLP 261
Query: 163 QDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGIT 222
+ + + R+PII TGNDFST+YAPLIRDGRM+KFYW P ED + + ++ DG+
Sbjct: 262 GMYNKEE-NPRVPIIVTGNDFSTLYAPLIRDGRMDKFYWAPTREDRVGVCKGIFRSDGVP 320
Query: 223 KDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVF 282
++V +V FP Q++DF+GALR+R YD + +W+ + GVEN+ +L+ ++ P F
Sbjct: 321 DEDVVRLVDAFPGQSIDFFGALRARVYDDEVRRWVAET-GVENIARRLVNSKEGP--PTF 377
Query: 283 TPPEKTVEALLESGYSLLREQQLIMETKLSKEYM 316
P T++ L+E G L+ EQ+ + +L+ +Y+
Sbjct: 378 EQPRMTLDKLMEYGRMLVEEQENVKRVQLADKYL 411
>gi|30687995|ref|NP_850320.1| ribulose bisphosphate carboxylase/oxygenase activase [Arabidopsis
thaliana]
gi|166835|gb|AAA20203.1| ribulose bisphosphate carboxylase/oxygenase activase [Arabidopsis
thaliana]
gi|15450671|gb|AAK96607.1| At2g39730/T5I7.3 [Arabidopsis thaliana]
gi|23397139|gb|AAN31853.1| unknown protein [Arabidopsis thaliana]
gi|330254621|gb|AEC09715.1| ribulose bisphosphate carboxylase/oxygenase activase [Arabidopsis
thaliana]
Length = 446
Score = 280 bits (715), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 142/292 (48%), Positives = 192/292 (65%), Gaps = 26/292 (8%)
Query: 46 YYIAPVFMASLC--------------------IWGGKGQGKSFQTELIFQAMGIEPVIMS 85
+YIAP FM L IWGGKGQGKSFQ EL+ MGI P++MS
Sbjct: 131 FYIAPAFMDKLVVHITKNFLTLPNIKVPLILGIWGGKGQGKSFQCELVMAKMGINPIMMS 190
Query: 86 AGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQI 144
AGELES AGEP KLIR+RYR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ+
Sbjct: 191 AGELESGNAGEPAKLIRQRYREAADLIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQM 249
Query: 145 VVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPN 204
V TLMN++DNPT V + + + + R+PII TGNDFST+YAPLIRDGRMEKFYW P
Sbjct: 250 VNATLMNIADNPTNVQLPGMYNKEE-NARVPIICTGNDFSTLYAPLIRDGRMEKFYWAPT 308
Query: 205 LEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVE 264
ED + + ++ D I +++ ++V FP Q++DF+GALR+R YD + K+++ + GVE
Sbjct: 309 REDRIGVCKGIFRTDKIKDEDIVTLVDQFPGQSIDFFGALRARVYDDEVRKFVESL-GVE 367
Query: 265 NLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYM 316
+G +L+ R+ PVF PE T E L+E G L+ EQ+ + +L++ Y+
Sbjct: 368 KIGKRLVNSREGP--PVFEQPEMTYEKLMEYGNMLVMEQENVKRVQLAETYL 417
>gi|30687999|ref|NP_850321.1| ribulose bisphosphate carboxylase/oxygenase activase [Arabidopsis
thaliana]
gi|330254622|gb|AEC09716.1| ribulose bisphosphate carboxylase/oxygenase activase [Arabidopsis
thaliana]
Length = 441
Score = 279 bits (714), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 142/292 (48%), Positives = 192/292 (65%), Gaps = 26/292 (8%)
Query: 46 YYIAPVFMASLC--------------------IWGGKGQGKSFQTELIFQAMGIEPVIMS 85
+YIAP FM L IWGGKGQGKSFQ EL+ MGI P++MS
Sbjct: 131 FYIAPAFMDKLVVHITKNFLTLPNIKVPLILGIWGGKGQGKSFQCELVMAKMGINPIMMS 190
Query: 86 AGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQI 144
AGELES AGEP KLIR+RYR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ+
Sbjct: 191 AGELESGNAGEPAKLIRQRYREAADLIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQM 249
Query: 145 VVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPN 204
V TLMN++DNPT V + + + + R+PII TGNDFST+YAPLIRDGRMEKFYW P
Sbjct: 250 VNATLMNIADNPTNVQLPGMYNKEE-NARVPIICTGNDFSTLYAPLIRDGRMEKFYWAPT 308
Query: 205 LEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVE 264
ED + + ++ D I +++ ++V FP Q++DF+GALR+R YD + K+++ + GVE
Sbjct: 309 REDRIGVCKGIFRTDKIKDEDIVTLVDQFPGQSIDFFGALRARVYDDEVRKFVESL-GVE 367
Query: 265 NLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYM 316
+G +L+ R+ PVF PE T E L+E G L+ EQ+ + +L++ Y+
Sbjct: 368 KIGKRLVNSREGP--PVFEQPEMTYEKLMEYGNMLVMEQENVKRVQLAETYL 417
>gi|168047149|ref|XP_001776034.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162672692|gb|EDQ59226.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 455
Score = 279 bits (714), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 155/356 (43%), Positives = 209/356 (58%), Gaps = 53/356 (14%)
Query: 10 GVIDPLFAGNFLGKDSDIV----FDYRQKVTRSFEY--LQGDYYIAPVFMASLCI----- 58
G++D LF G G + +V +DY R++ + YIAP FM L I
Sbjct: 90 GMVDALFQGA-TGLGTQVVTMSSWDYVSTAQRTYNFDNTSDGLYIAPAFMDKLVIHVCKN 148
Query: 59 ---------------WGGKGQGKSFQTELIFQAMGI--------------------EPVI 83
WGGKGQGKSFQ+EL+ + +GI P++
Sbjct: 149 FMNLPGIKVPLILGVWGGKGQGKSFQSELVMKKLGINSGRGLLSSLVTLSFEISMCHPIM 208
Query: 84 MSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNN 142
MSAGELES AGEP KLIR+RYR A+ ++Q +GKM CL IND+DAG GR G TQ TVNN
Sbjct: 209 MSAGELESGNAGEPAKLIRQRYREAAAIIQ-KGKMCCLFINDLDAGAGRMGGTTQYTVNN 267
Query: 143 QIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQ 202
Q+V TLMN++D+PT V + + + +I R+PII TGNDFST+YAPLIRDGRMEKFYW
Sbjct: 268 QMVNATLMNIADSPTNVQLPGVYNKEEIP-RVPIIVTGNDFSTLYAPLIRDGRMEKFYWA 326
Query: 203 PNLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGG 262
P ED + + ++ D I+ D V +V FP Q++DF+GALR+R YD + WI G
Sbjct: 327 PTREDRIGVCKGIFRLDNISDDNVTKMVDMFPGQSIDFFGALRARVYDDEVRNWISAT-G 385
Query: 263 VENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYMKN 318
VENLG L+ + P F P T+E L+E G L++EQQ + +L+++Y+ +
Sbjct: 386 VENLGKNLVNSKDGP--PEFKKPAMTIEKLMEYGQMLVQEQQNVKRVQLAEQYLNS 439
>gi|18405145|ref|NP_565913.1| ribulose bisphosphate carboxylase/oxygenase activase [Arabidopsis
thaliana]
gi|12643259|sp|P10896.2|RCA_ARATH RecName: Full=Ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic; Short=RA; Short=RuBisCO activase; Flags:
Precursor
gi|11762250|gb|AAG40401.1|AF325049_1 At2g39730 [Arabidopsis thaliana]
gi|166834|gb|AAA20202.1| ribulose bisphosphate carboxylase/oxygenase activase [Arabidopsis
thaliana]
gi|2642155|gb|AAB87122.1| expressed protein [Arabidopsis thaliana]
gi|15810188|gb|AAL06995.1| At2g39730/T5I7.3_ [Arabidopsis thaliana]
gi|21594581|gb|AAM66023.1| unknown [Arabidopsis thaliana]
gi|330254620|gb|AEC09714.1| ribulose bisphosphate carboxylase/oxygenase activase [Arabidopsis
thaliana]
Length = 474
Score = 279 bits (714), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 142/292 (48%), Positives = 192/292 (65%), Gaps = 26/292 (8%)
Query: 46 YYIAPVFMASLC--------------------IWGGKGQGKSFQTELIFQAMGIEPVIMS 85
+YIAP FM L IWGGKGQGKSFQ EL+ MGI P++MS
Sbjct: 131 FYIAPAFMDKLVVHITKNFLTLPNIKVPLILGIWGGKGQGKSFQCELVMAKMGINPIMMS 190
Query: 86 AGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQI 144
AGELES AGEP KLIR+RYR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ+
Sbjct: 191 AGELESGNAGEPAKLIRQRYREAADLIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQM 249
Query: 145 VVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPN 204
V TLMN++DNPT V + + + + R+PII TGNDFST+YAPLIRDGRMEKFYW P
Sbjct: 250 VNATLMNIADNPTNVQLPGMYNKEE-NARVPIICTGNDFSTLYAPLIRDGRMEKFYWAPT 308
Query: 205 LEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVE 264
ED + + ++ D I +++ ++V FP Q++DF+GALR+R YD + K+++ + GVE
Sbjct: 309 REDRIGVCKGIFRTDKIKDEDIVTLVDQFPGQSIDFFGALRARVYDDEVRKFVESL-GVE 367
Query: 265 NLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYM 316
+G +L+ R+ PVF PE T E L+E G L+ EQ+ + +L++ Y+
Sbjct: 368 KIGKRLVNSREGP--PVFEQPEMTYEKLMEYGNMLVMEQENVKRVQLAETYL 417
>gi|297827581|ref|XP_002881673.1| hypothetical protein ARALYDRAFT_482998 [Arabidopsis lyrata subsp.
lyrata]
gi|297327512|gb|EFH57932.1| hypothetical protein ARALYDRAFT_482998 [Arabidopsis lyrata subsp.
lyrata]
Length = 474
Score = 279 bits (713), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 148/318 (46%), Positives = 200/318 (62%), Gaps = 38/318 (11%)
Query: 32 RQKVTRSFEYL-QG-----------DYYIAPVFMASLC--------------------IW 59
V S+EY+ QG +YIAP FM L IW
Sbjct: 105 HHAVLSSYEYISQGLRQYNLDNMMDGFYIAPAFMDKLVVHITKNFLTLPNIKVPLILGIW 164
Query: 60 GGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMS 119
GGKGQGKSFQ EL+ MGI P++MSAGELES AGEP KLIR+RYR A+ +++ +GKM
Sbjct: 165 GGKGQGKSFQCELVMAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADMIK-KGKMC 223
Query: 120 CLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIF 178
CL IND+DAG GR G TQ TVNNQ+V TLMN++DNPT V + + + + R+PII
Sbjct: 224 CLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEE-NARVPIIV 282
Query: 179 TGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQAL 238
TGNDFST+YAPLIRDGRMEKFYW P ED + + ++ D I +++ ++V FP Q++
Sbjct: 283 TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDKIKDEDIVTLVDQFPGQSI 342
Query: 239 DFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYS 298
DF+GALR+R YD + K+++ + GVE +G +L+ R+ PVF PE T+E L+E G
Sbjct: 343 DFFGALRARVYDDEVRKFVEGL-GVEKIGKRLVNSREGP--PVFEQPEMTLEKLMEYGNM 399
Query: 299 LLREQQLIMETKLSKEYM 316
L+ EQ+ + +L+ Y+
Sbjct: 400 LVMEQENVKRVQLADTYL 417
>gi|116789808|gb|ABK25395.1| unknown [Picea sitchensis]
Length = 310
Score = 279 bits (713), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 144/292 (49%), Positives = 189/292 (64%), Gaps = 26/292 (8%)
Query: 46 YYIAPVFMASLC--------------------IWGGKGQGKSFQTELIFQAMGIEPVIMS 85
YYIAP FM L IWGGKGQGKSFQ EL+F +GI P++MS
Sbjct: 4 YYIAPSFMDKLLVHISKNFMNLPNIKVPLILGIWGGKGQGKSFQCELVFAKLGINPIMMS 63
Query: 86 AGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNT-QMTVNNQI 144
AGELES AGEP KL+R+RYR AS +V+ +GKM L IND+DAG GR G+T Q TVNNQ+
Sbjct: 64 AGELESGDAGEPAKLLRKRYREASDIVK-KGKMCVLFINDLDAGAGRMGSTTQYTVNNQM 122
Query: 145 VVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPN 204
V TLMN++DNPT V + + D R+PI+ TGNDFST+YAPLIRDGRMEKFYW P
Sbjct: 123 VNATLMNIADNPTNVQLPGMYNRQD-NPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPT 181
Query: 205 LEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVE 264
+D + + ++ D + D+V +V TFP Q++DF+GALR+R YD + KW+ G++
Sbjct: 182 RDDRIGVCQGIFRADNVHPDDVVRLVDTFPGQSIDFFGALRARVYDDEVRKWVAGT-GIQ 240
Query: 265 NLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYM 316
N+G KL+ ++ P F P T+E LLE G L+ EQ + +L+ +YM
Sbjct: 241 NIGKKLINSKEGP--PTFEKPAMTIEKLLEYGNMLVGEQDNVKRLQLADKYM 290
>gi|168052682|ref|XP_001778769.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669888|gb|EDQ56467.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 471
Score = 278 bits (711), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 150/335 (44%), Positives = 206/335 (61%), Gaps = 31/335 (9%)
Query: 10 GVIDPLFAG-NFLGKDSDIVFDY----RQKVTRSFEYLQGDYYIAPVFMASLCI------ 58
G++D LF G LG + I+ + + + T S + ++ YIAP FM L I
Sbjct: 82 GMVDALFQGAQGLGTQNAIMSSWGYVSQGQRTYSMDNIKDGLYIAPAFMDKLVIHIAKNF 141
Query: 59 --------------WGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRER 104
WGGKGQGKSFQ EL+ +GI P++MSAGELES AGEP KLIR+R
Sbjct: 142 MNLPGIKVPLILGIWGGKGQGKSFQCELVMSKLGINPIVMSAGELESGNAGEPAKLIRQR 201
Query: 105 YRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIGQ 163
YR A+ V++ +GKM L IND+DAG GR G TQ TVNNQ+V TLMN++DNPT V +
Sbjct: 202 YREAADVIK-KGKMCALFINDLDAGTGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPS 260
Query: 164 DWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITK 223
+ + I R+PII TGNDF T+YAPLIRDGRMEKFYW P ED + + ++ D +
Sbjct: 261 IYNKETIP-RVPIIVTGNDFPTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRLDNVHD 319
Query: 224 DEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVFT 283
+V +V FP Q++DF+GALR+R YD + KWI + G+EN+G L+ + P F
Sbjct: 320 YDVAKLVDQFPGQSIDFFGALRARVYDDEVRKWIAKV-GIENIGRNLVNSKDGP--PTFQ 376
Query: 284 PPEKTVEALLESGYSLLREQQLIMETKLSKEYMKN 318
P T++ L+E G L++EQQ + +L+ +Y+ +
Sbjct: 377 KPAMTIDKLMEYGNLLVQEQQNVKRVQLADKYLSS 411
>gi|23320705|gb|AAN15946.1| rubisco activase, partial [Medicago sativa]
Length = 270
Score = 278 bits (710), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 137/257 (53%), Positives = 183/257 (71%), Gaps = 6/257 (2%)
Query: 62 KGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCL 121
+GQGKSFQ EL+F MGI P++MSAGELES AGEP KLIR+RYR AS +++ +GKM CL
Sbjct: 2 EGQGKSFQAELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREASDIIR-KGKMCCL 60
Query: 122 MINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTG 180
IND+DAG GR G TQ TVNNQ+V TLMN++DNPT V + + + D R+PII TG
Sbjct: 61 FINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKED-NARVPIIVTG 119
Query: 181 NDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDF 240
NDFST+YAPLIRDGRMEKFYW P ED + + ++ D I KD++ IV TFP Q++DF
Sbjct: 120 NDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCIGIFRHDNIAKDDIVKIVDTFPGQSIDF 179
Query: 241 YGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLL 300
+GALR+R YD + KW+ + G+E +G KL+ ++ PVF P+ T+E LLE G L+
Sbjct: 180 FGALRARVYDDEVRKWVSGV-GIETIGKKLVNSKEGP--PVFEQPKMTLEKLLEYGNMLV 236
Query: 301 REQQLIMETKLSKEYMK 317
EQ+ + +L+ +Y++
Sbjct: 237 SEQENVKRVQLADKYLE 253
>gi|412985893|emb|CCO17093.1| predicted protein [Bathycoccus prasinos]
Length = 480
Score = 277 bits (709), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 148/334 (44%), Positives = 215/334 (64%), Gaps = 32/334 (9%)
Query: 11 VIDPLFAGNF-LGKDSDIVF---DYRQKVTRSFEYLQGD---YYIAPVFMAS-------- 55
++D F G F +G + V DY + ++ + L D YYI+P F+
Sbjct: 132 MVDSKFQGGFGMGGTHNAVMSSTDYISQGQKNLDNLSVDGNNYYISPSFLDKTAVHVAKN 191
Query: 56 ------------LCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRE 103
L +WGGKGQGK+FQ+ LIF +GI P++MSAGELES AGEP KL+R+
Sbjct: 192 FMDLPKIKVPLILGVWGGKGQGKTFQSNLIFAKLGISPIVMSAGELESGNAGEPAKLVRQ 251
Query: 104 RYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIG 162
RYR AS +V+ +GK+S L IND+DAG GR G TQ TVNNQ+V TLMN++DNPT V +
Sbjct: 252 RYREASDIVK-KGKLSTLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLP 310
Query: 163 QDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGIT 222
+ +I R+P+I TGNDFST+YAPL+RDGRM+KFYW P ED + I + +++ DG+
Sbjct: 311 GQYEVVEIP-RVPVIATGNDFSTLYAPLVRDGRMDKFYWAPTFEDRVGIANGIFKADGVD 369
Query: 223 KDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVF 282
+ +V S+V+ F Q++DF+GALR+R YD + ++I ++ G+EN+G +L+ RK +E+ F
Sbjct: 370 EADVRSLVEAFDGQSIDFFGALRARVYDDKVREFIQEM-GLENIGKRLVNVRKGEEVS-F 427
Query: 283 TPPEKTVEALLESGYSLLREQQLIMETKLSKEYM 316
P ++E LLE G +L EQ+ + +L+ Y+
Sbjct: 428 DAPAMSIEILLEYGKALENEQENVKRVQLADAYL 461
>gi|307111891|gb|EFN60125.1| hypothetical protein CHLNCDRAFT_133490 [Chlorella variabilis]
Length = 419
Score = 277 bits (708), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 144/331 (43%), Positives = 207/331 (62%), Gaps = 30/331 (9%)
Query: 11 VIDPLF-AGNFLGKDSDIVF---DYRQKVTRSFEYLQGDYYIAPVFMAS----------- 55
++D LF G +G + + DY R+F ++ +YI+P F+
Sbjct: 74 MVDSLFQGGQGMGGTHNAILSSQDYLSTAQRNFNNIEDGFYISPAFLDKISIHVAKNFLD 133
Query: 56 ---------LCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYR 106
L IWGGKGQGK+FQ L ++ +GI P++MSAGELES AGEP KLIR+RYR
Sbjct: 134 LPKIKVPLILGIWGGKGQGKTFQCNLAYKKLGISPIVMSAGELESGNAGEPAKLIRQRYR 193
Query: 107 TASQVVQNQGKMSCLMINDIDAGLGRFGN-TQMTVNNQIVVGTLMNLSDNPTRVSIGQDW 165
AS +++ +G+MS L IND+DAG GR G+ TQ TVNNQ+V TLMN++DNPT V + +
Sbjct: 194 EASDIIK-KGRMSSLFINDLDAGAGRMGDATQYTVNNQMVNATLMNIADNPTNVQLPGVY 252
Query: 166 RESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITKDE 225
+ +I R+PI+ TGNDFST+YAPLIRDGRMEK+YW P ED + + +++ D + + +
Sbjct: 253 KNEEIP-RVPIVCTGNDFSTLYAPLIRDGRMEKYYWNPTREDRVGVCMGIFQHDNVDRAD 311
Query: 226 VGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVFTPP 285
V ++V FP Q++DF+GALR+R YD + +WI GVEN+G +L+ R+ K F P
Sbjct: 312 VETLVDAFPGQSIDFFGALRARVYDDKVREWIQGT-GVENIGKRLVNSREGKV--EFDKP 368
Query: 286 EKTVEALLESGYSLLREQQLIMETKLSKEYM 316
+ L+ G L+ EQ+ + +L+ EYM
Sbjct: 369 PMPLSTLMNYGNLLVEEQENVKRVQLADEYM 399
>gi|356624532|pdb|3T15|A Chain A, Structure Of Green-Type Rubisco Activase From Tobacco
gi|356624733|pdb|3ZW6|A Chain A, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
gi|356624734|pdb|3ZW6|B Chain B, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
gi|356624735|pdb|3ZW6|C Chain C, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
gi|356624736|pdb|3ZW6|D Chain D, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
gi|356624737|pdb|3ZW6|E Chain E, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
gi|356624738|pdb|3ZW6|F Chain F, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco
Length = 293
Score = 277 bits (708), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 142/288 (49%), Positives = 188/288 (65%), Gaps = 26/288 (9%)
Query: 46 YYIAPVFMASLC--------------------IWGGKGQGKSFQTELIFQAMGIEPVIMS 85
+YIAP FM L IWGGKGQGKSFQ EL+F+ MGI P++MS
Sbjct: 9 FYIAPAFMDKLVVHITKNFLKLPNIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMS 68
Query: 86 AGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQI 144
AGELES AGEP KLIR+RYR A+++++ +G M CL IND+DAG GR G TQ TVNNQ+
Sbjct: 69 AGELESGNAGEPAKLIRQRYREAAEIIR-KGNMCCLFINDLDAGAGRMGGTTQYTVNNQM 127
Query: 145 VVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPN 204
V TLMN++DNPT V + + + + R+PII TGNDFST+YAPLIRDGRMEKFYW P
Sbjct: 128 VNATLMNIADNPTNVQLPGMYNKQE-NARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT 186
Query: 205 LEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVE 264
ED + + ++ D + ++V IV FP Q++DF+GALR+R YD + KW+ G+E
Sbjct: 187 REDRIGVCTGIFRTDNVPAEDVVKIVDNFPGQSIDFFGALRARVYDDEVRKWVSGT-GIE 245
Query: 265 NLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLS 312
+G+KLL P F P+ T+E LLE G L++EQ+ + +L+
Sbjct: 246 KIGDKLLNSFDGP--PTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLA 291
>gi|1805719|emb|CAA71667.1| Rubisco activase [Chlorococcum littorale]
Length = 403
Score = 276 bits (706), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 146/331 (44%), Positives = 206/331 (62%), Gaps = 30/331 (9%)
Query: 11 VIDPLFAGNFLGKDSDIVF----DYRQKVTRSFEYLQGDYYIAPVFMAS----------- 55
++D LF G G + DY +R+F ++ +YI+P F+
Sbjct: 59 MVDSLFQGPGSGGGTHSAVLSSEDYLSTASRNFNNVEDGFYISPAFLDKMTIHVAKNFMD 118
Query: 56 ---------LCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYR 106
L IWGGKGQGK+FQ L ++ +GI P++MSAGELES AGEP KLIR+RYR
Sbjct: 119 LPKIKVPLILGIWGGKGQGKTFQCALAYKKLGISPIVMSAGELESGNAGEPAKLIRQRYR 178
Query: 107 TASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIGQDW 165
AS V+ +GKM L IND+DAG GR G TQ TVNNQ+V TLMN++DNPT V + +
Sbjct: 179 EASDSVK-KGKMCSLFINDLDAGAGRMGMGTQYTVNNQMVNATLMNIADNPTNVQLPGVY 237
Query: 166 RESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITKDE 225
+E I R+PI+ TGNDFST+YAPLIRDGRMEK+YW P ED + + ++++D + + E
Sbjct: 238 KEVQIP-RVPIVCTGNDFSTLYAPLIRDGRMEKYYWNPTREDRIGVCMGIFQEDNVNRGE 296
Query: 226 VGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVFTPP 285
V +V FP Q++DF+GALR+R YD + +++ + GVENL +L+ R+ K VF P
Sbjct: 297 VEVLVDAFPGQSIDFFGALRARVYDDKVREFVKNT-GVENLSKRLINSREGKV--VFEKP 353
Query: 286 EKTVEALLESGYSLLREQQLIMETKLSKEYM 316
++ L++ G L EQ+ + +L++EYM
Sbjct: 354 SMNLDILMKYGKFLTNEQENVKRVQLAEEYM 384
>gi|427542680|gb|AFY63117.1| alpha-form Rubisco activase [Zea mays]
Length = 463
Score = 276 bits (706), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 147/334 (44%), Positives = 206/334 (61%), Gaps = 33/334 (9%)
Query: 10 GVIDPLFAGNFLGKDSDIV----FDYRQKVTR--SFEYLQGDYYIAPVFMASLC------ 57
G +DPLF +G + + +DY + R S + + YYIAP FM L
Sbjct: 84 GRVDPLFQAP-MGDGTHVAVLSSYDYISQGLRHYSLDNMMDGYYIAPAFMDKLVVHIAKN 142
Query: 58 --------------IWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRE 103
IWGGKGQGKSFQ EL+ MGI P++MSAGELES AGEP KLIR+
Sbjct: 143 FMPLPNIKVPLILGIWGGKGQGKSFQCELVLAKMGINPIVMSAGELESGNAGEPAKLIRQ 202
Query: 104 RYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIG 162
RYR A+ +++ +GKM L IND+ AG GR G TQ TVNNQ+V TLMN++DNPT V +
Sbjct: 203 RYREAADMIK-KGKMCVLFINDLYAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLP 261
Query: 163 QDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGIT 222
+ + + R+PII TGNDFST+YAPLIRDGRM+KFYW P ED + + ++ DG+
Sbjct: 262 GMYNKEE-NPRVPIIVTGNDFSTLYAPLIRDGRMDKFYWAPTREDRVGVCKGIFRSDGVP 320
Query: 223 KDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVF 282
++V +V FP Q++DF+GALR+R YD + +W+ + GVEN+ +L+ ++ P F
Sbjct: 321 DEDVVRLVDAFPGQSIDFFGALRARVYDDEVRRWVAET-GVENIARRLVNSKEGP--PTF 377
Query: 283 TPPEKTVEALLESGYSLLREQQLIMETKLSKEYM 316
P T++ L+E G L+ EQ+ + +L+ +Y+
Sbjct: 378 EQPRMTLDKLMEYGRMLVEEQENVKRVQLADKYL 411
>gi|302840850|ref|XP_002951971.1| hypothetical protein VOLCADRAFT_105291 [Volvox carteri f.
nagariensis]
gi|300262872|gb|EFJ47076.1| hypothetical protein VOLCADRAFT_105291 [Volvox carteri f.
nagariensis]
Length = 409
Score = 276 bits (706), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 143/331 (43%), Positives = 211/331 (63%), Gaps = 31/331 (9%)
Query: 11 VIDPLFAGNF-LGKDSDIVF---DYRQKVTRSFEYLQGDYYIAPVFMAS----------- 55
++D LF G F G + V +Y + SF ++ +YI+P F+
Sbjct: 65 MVDDLFQGGFGAGGTHNAVLSSTEYLSQARASFNNIEDGFYISPAFLDKMTIHIAKNFMD 124
Query: 56 ---------LCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYR 106
L IWGGKGQGK+FQ L ++ +GI P++MSAGELES AGEP KLIR RYR
Sbjct: 125 LPKIKVPLILGIWGGKGQGKTFQCALAYKKLGISPIVMSAGELESGNAGEPAKLIRTRYR 184
Query: 107 TASQVVQNQGKMSCLMINDIDAGLGRFGNT-QMTVNNQIVVGTLMNLSDNPTRVSIGQDW 165
AS +++ +GKM L IND+DAG GR G+T Q TVNNQ+V TLMN++DNPT V + +
Sbjct: 185 EASDIIK-KGKMCSLFINDLDAGAGRMGDTTQYTVNNQMVNATLMNIADNPTNVQLPGVY 243
Query: 166 RESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITKDE 225
+ +I R+PI+ TGNDFST+YAPLIRDGRMEK+YW P ED + + ++++D +++ +
Sbjct: 244 KNEEIP-RVPIVCTGNDFSTLYAPLIRDGRMEKYYWNPTREDRIGVCMGIFQEDNVSRGD 302
Query: 226 VGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVFTPP 285
V +V TFP Q++DF+GALR+R YD + KWI ++ G+E +G+KL+ R+ P +
Sbjct: 303 VERLVDTFPGQSIDFFGALRARVYDDMVRKWIAEV-GIEGIGSKLVNGRQKVSFPKVS-- 359
Query: 286 EKTVEALLESGYSLLREQQLIMETKLSKEYM 316
+++ LL+ G +L+ EQ+ + +L+ Y+
Sbjct: 360 -MSLDVLLKYGRALVDEQENVKRVQLADAYL 389
>gi|383470439|gb|AFH35543.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase
activase [Brassica oleracea]
Length = 438
Score = 275 bits (704), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 139/291 (47%), Positives = 191/291 (65%), Gaps = 26/291 (8%)
Query: 47 YIAPVFMASLC--------------------IWGGKGQGKSFQTELIFQAMGIEPVIMSA 86
+IAP FM L IWGGKGQGKSFQ EL+ MGI P++MSA
Sbjct: 133 FIAPAFMDKLVVHITKNFLTLPNIKVPLILGIWGGKGQGKSFQCELVMAKMGINPIMMSA 192
Query: 87 GELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIV 145
GELES AGEP KLIR+RYR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ+V
Sbjct: 193 GELESGNAGEPAKLIRQRYREAADMIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMV 251
Query: 146 VGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNL 205
TLMN++DNPT V + + + + R+PII TGNDFST+YAPLIRDGRMEKFYW P
Sbjct: 252 NATLMNIADNPTNVQLPGMYNKEE-NARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTR 310
Query: 206 EDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVEN 265
ED + + ++ D + +++ ++V FP Q++DF+GALR+R YD + K+++ + GVE
Sbjct: 311 EDRIGVCKGIFRTDNVKDEDIVTLVDQFPGQSIDFFGALRARVYDDEVRKFVEGL-GVEK 369
Query: 266 LGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYM 316
+G +L+ R+ PVF P T+E L+E G L+ EQ+ + +L+ +Y+
Sbjct: 370 IGKRLVNSREGP--PVFEQPAMTLEKLMEYGNMLVMEQENVKRVQLADQYL 418
>gi|10720248|sp|O64981.1|RCA_PHAVU RecName: Full=Ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic; Short=RA; Short=RuBisCO activase; Flags:
Precursor
gi|3033513|gb|AAC12868.1| rubisco activase [Phaseolus vulgaris]
Length = 441
Score = 275 bits (704), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 139/300 (46%), Positives = 195/300 (65%), Gaps = 26/300 (8%)
Query: 38 SFEYLQGDYYIAPVFMASLCI--------------------WGGKGQGKSFQTELIFQAM 77
+F+ ++ +YIAP F+ L + WGGKGQGKSFQ EL+F M
Sbjct: 127 NFDNIKDGFYIAPAFLDKLVVHIAKNFMTLPNIKVPLILGVWGGKGQGKSFQCELVFAKM 186
Query: 78 GIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NT 136
GI P++MSAGELES AGEP KLIR+RYR AS +++ +GKM L IND+DAG GR G T
Sbjct: 187 GINPIMMSAGELESGNAGEPAKLIRQRYREASDLIK-KGKMCVLFINDLDAGAGRLGGTT 245
Query: 137 QMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRM 196
Q TVNNQ+V TLMN++DNPT V + + + D R+PII TGNDFST+YAPLIRDGRM
Sbjct: 246 QYTVNNQMVNATLMNIADNPTNVQLPGMYNKED-NARVPIIVTGNDFSTLYAPLIRDGRM 304
Query: 197 EKFYWQPNLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKW 256
EKFYW P ED + + ++ DG+ + ++ +V P Q++DF+GALR+R YD + KW
Sbjct: 305 EKFYWAPTREDRIGVCKGIFRTDGVPEKDIVELVDKHPGQSIDFFGALRARVYDDEVRKW 364
Query: 257 IDDIGGVENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYM 316
I + GV+++G KL+ ++ P F P+ T++ LL L++EQ+ + +L+ +Y+
Sbjct: 365 ISGV-GVDSVGKKLVNSKEGP--PTFDQPKMTLDKLLLYASMLVQEQENVKRVQLADQYL 421
>gi|428227229|ref|YP_007111326.1| ribulose 1,5-bisphosphate carboxylase small subunit [Geitlerinema
sp. PCC 7407]
gi|427987130|gb|AFY68274.1| ribulose 1,5-bisphosphate carboxylase small subunit [Geitlerinema
sp. PCC 7407]
Length = 415
Score = 275 bits (703), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 137/267 (51%), Positives = 190/267 (71%), Gaps = 5/267 (1%)
Query: 56 LCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQ 115
L I G KG+GKSFQ EL+F+ MGIEPV MSAGELES AG+P +LIR RYR A + ++ +
Sbjct: 33 LGIHGRKGEGKSFQCELVFERMGIEPVHMSAGELESPDAGDPARLIRLRYREAGEYIRTR 92
Query: 116 GKMSCLMINDIDAGLGRF-GNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRI 174
G+M LMIND+DAG GRF G TQ TVN Q+V TLMN++DNPT V + + E + R+
Sbjct: 93 GRMCVLMINDLDAGAGRFDGGTQYTVNTQLVNATLMNIADNPTNVQLPGSYDEKPLP-RV 151
Query: 175 PIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITKDEVGSIVKTFP 234
PI+ TGNDFST+YAPLIRDGRMEKFYW P+ ED + IV ++ DG+++ + +V TFP
Sbjct: 152 PILVTGNDFSTLYAPLIRDGRMEKFYWDPDYEDRVGIVSGIFSDDGLSRQDFERLVDTFP 211
Query: 235 NQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVFTPPEKTVEALLE 294
Q++DF+GALRSR YD + ++I ++ GVE + +LL ++ P F P T+E LLE
Sbjct: 212 AQSIDFFGALRSRFYDEQVRRFIQEV-GVEQVSFRLLNSKEGA--PTFQKPRFTLERLLE 268
Query: 295 SGYSLLREQQLIMETKLSKEYMKNIDD 321
GY +++EQ+ + ++L++EY + + D
Sbjct: 269 FGYLMVQEQERVRTSRLAEEYNRVLMD 295
>gi|255075671|ref|XP_002501510.1| ribulose bisphosphate carboxylase/oxygenase activase,chloroplast
precursor [Micromonas sp. RCC299]
gi|226516774|gb|ACO62768.1| ribulose bisphosphate carboxylase/oxygenase activase,chloroplast
precursor [Micromonas sp. RCC299]
Length = 413
Score = 273 bits (699), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 144/332 (43%), Positives = 211/332 (63%), Gaps = 30/332 (9%)
Query: 11 VIDPLFAGNF-LGKDSDIVFDYRQKVTRSFEYLQG----DYYIAPVFMASLCI------- 58
++D F G F LG + V V+ F+ + YYI+ FM C+
Sbjct: 66 MVDSKFQGGFGLGGTHNAVMSSSDYVSDGFKDVSNMTDEGYYISKGFMDRFCVHIAKNFM 125
Query: 59 -------------WGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERY 105
WGGKGQGK+FQ+ LIF+ +G+ P++MSAGELES AGEP KLIR+RY
Sbjct: 126 DLPKIKVPLILGVWGGKGQGKTFQSMLIFKKLGVGPIVMSAGELESGNAGEPAKLIRQRY 185
Query: 106 RTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIGQD 164
R AS +++ +G+MS L IND+DAG GR G +TQ TVNNQ+V TLMNL+DNPT V +
Sbjct: 186 REASDIIK-KGRMSTLFINDLDAGAGRMGGSTQYTVNNQMVNATLMNLADNPTNVQLPGQ 244
Query: 165 WRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITKD 224
++ +I R+PII TGNDFST+YAPLIRDGRMEK+YW P+ ED + + +++ DG+ +
Sbjct: 245 YQVEEIP-RVPIIATGNDFSTLYAPLIRDGRMEKYYWSPSFEDRVGVACGIFKADGVAEK 303
Query: 225 EVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVFTP 284
+V +V+TF Q++DF+GALR+R YD + +WI + G+E +G L+ ++ ++ F P
Sbjct: 304 DVEVLVRTFDGQSIDFFGALRARVYDDKVREWIRET-GIEAMGPLLVNPKRGSKV-TFEP 361
Query: 285 PEKTVEALLESGYSLLREQQLIMETKLSKEYM 316
P +++ LL+ G +L EQ+ + +L+ Y+
Sbjct: 362 PRMSLDILLQYGKALEMEQENVKRVQLADAYL 393
>gi|145346050|ref|XP_001417509.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144577736|gb|ABO95802.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 415
Score = 273 bits (699), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 139/262 (53%), Positives = 188/262 (71%), Gaps = 5/262 (1%)
Query: 56 LCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQ 115
L +WGGKGQGK+FQ++LIF+ +GI P++MSAGELES AGEP KL+R+RYR AS +V+ +
Sbjct: 138 LGVWGGKGQGKTFQSDLIFKKLGISPIVMSAGELESGNAGEPAKLVRQRYREASDIVK-K 196
Query: 116 GKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRI 174
G+MS L IND+DAG GR G TQ TVNNQ+V TLMN++DNPT V + + +I R+
Sbjct: 197 GRMSTLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGQYEVIEIP-RV 255
Query: 175 PIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITKDEVGSIVKTFP 234
PII TGNDFST+YAPL+RDGRM+KFYW P ED + I + ++ DGI K++V +V TF
Sbjct: 256 PIIATGNDFSTLYAPLVRDGRMDKFYWSPTREDRVGIANGIFMADGIEKEDVEVLVDTFE 315
Query: 235 NQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVFTPPEKTVEALLE 294
Q++DF+GALRSR YD + +I ++ G E LG +L+ RK +E+ F PP+ T+E LL
Sbjct: 316 GQSIDFFGALRSRVYDDLVRDFILEV-GYEALGPRLINPRKGEEVN-FNPPKMTLEVLLA 373
Query: 295 SGYSLLREQQLIMETKLSKEYM 316
G L EQ+ I +L+ Y+
Sbjct: 374 YGKELENEQENIKRIQLADAYL 395
>gi|342360007|gb|AEL29575.1| chloroplast rubisco activase [Chlorella pyrenoidosa]
Length = 413
Score = 273 bits (698), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 137/308 (44%), Positives = 196/308 (63%), Gaps = 26/308 (8%)
Query: 30 DYRQKVTRSFEYLQGDYYIAPVFMAS--------------------LCIWGGKGQGKSFQ 69
DY R+F ++ +YI+P F+ L IWGGKGQGK+FQ
Sbjct: 92 DYLSTAARNFNNIEDGFYISPAFLDKMSIHVAKNFMDLPKIKVPLILGIWGGKGQGKTFQ 151
Query: 70 TELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAG 129
L ++ +GI P++MSAGELES AGEP KLIR+RYR AS +++ +G+M L IND+DAG
Sbjct: 152 CNLAYKKLGISPIVMSAGELESGNAGEPAKLIRQRYREASDIIK-KGRMCSLFINDLDAG 210
Query: 130 LGRFGN-TQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYA 188
GR G+ TQ TVNNQ+V TLMN++D+PT V + ++ +I R+PI+ TGNDFST+YA
Sbjct: 211 AGRMGDATQYTVNNQMVNATLMNIADSPTNVQLPGVYKNEEIP-RVPIVCTGNDFSTLYA 269
Query: 189 PLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRT 248
PLIRDGRMEK+YW P ED + + +++ D + + +V +V FP Q++DF+GALR+R
Sbjct: 270 PLIRDGRMEKYYWNPTREDRIGVCMGIFQHDNVDRADVEKLVDAFPGQSIDFFGALRARV 329
Query: 249 YDRSISKWIDDIGGVENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIME 308
YD + +WI GVEN+G +L+ R+ K F P + L++ G L+ EQ+ +
Sbjct: 330 YDDKVREWITGT-GVENIGKRLINSREGK--VEFEKPSMNLSTLMQYGNMLVEEQENVKR 386
Query: 309 TKLSKEYM 316
+L+ EYM
Sbjct: 387 VQLADEYM 394
>gi|308802948|ref|XP_003078787.1| RuBisCO activase (IC) [Ostreococcus tauri]
gi|116057240|emb|CAL51667.1| RuBisCO activase (IC) [Ostreococcus tauri]
Length = 407
Score = 273 bits (698), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 135/262 (51%), Positives = 187/262 (71%), Gaps = 5/262 (1%)
Query: 56 LCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQ 115
L +WGGKGQGK+FQ++LIF+ +GI P++MSAGELES AGEP KL+R+RYR AS +V+ +
Sbjct: 129 LGVWGGKGQGKTFQSDLIFRKLGINPIVMSAGELESGNAGEPAKLVRQRYREASDIVK-K 187
Query: 116 GKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRI 174
G+MS L IND+DAG GR G TQ TVNNQ+V TLMN++DNPT V + + +I R+
Sbjct: 188 GRMSTLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGQYEVIEIP-RV 246
Query: 175 PIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITKDEVGSIVKTFP 234
PII TGNDFST+YAPL+RDGRM+KFYW P ED + I + ++ DG++ ++V +V TF
Sbjct: 247 PIIATGNDFSTLYAPLVRDGRMDKFYWSPTFEDRVGIANGIFMADGVSPEDVEVLVSTFE 306
Query: 235 NQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVFTPPEKTVEALLE 294
Q++DF+GALR+R YD + +I + G + LG +L+ RK +E+ VF PP T+E LL
Sbjct: 307 GQSIDFFGALRARVYDDKVRDFILSV-GYDQLGKRLINPRKGEEV-VFEPPAMTLEVLLA 364
Query: 295 SGYSLLREQQLIMETKLSKEYM 316
G + EQ+ I +L+ Y+
Sbjct: 365 YGKEIENEQENIKRIQLADAYL 386
>gi|149392725|gb|ABR26165.1| ribulose bisphosphate carboxylase/oxygenase activase [Oryza sativa
Indica Group]
Length = 273
Score = 273 bits (697), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 131/253 (51%), Positives = 181/253 (71%), Gaps = 6/253 (2%)
Query: 65 GKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMIN 124
GKSFQ EL+F MGI P++MSAGELES AGEP KLIR+RYR A+ +++ +GKM CL IN
Sbjct: 1 GKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFIN 59
Query: 125 DIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDF 183
D+DAG GR G TQ TVNNQ+V TLMN++DNPT V + + + D R+PII TGNDF
Sbjct: 60 DLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKED-NPRVPIIVTGNDF 118
Query: 184 STIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGA 243
ST+YAPLIRDGRMEKFYW P +D + + ++ D + +++ IV +FP Q++DF+GA
Sbjct: 119 STLYAPLIRDGRMEKFYWAPTRDDRVGVCKGIFRTDNVPDEDIVKIVDSFPGQSIDFFGA 178
Query: 244 LRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQ 303
LR+R YD + KW+ D GVEN+G +L+ R+ P F P+ T+E L+E GY L++EQ
Sbjct: 179 LRARVYDDEVRKWVSDT-GVENIGKRLVNSREGP--PEFEQPKMTIEKLMEYGYMLVKEQ 235
Query: 304 QLIMETKLSKEYM 316
+ + +L+++Y+
Sbjct: 236 ENVKRVQLAEQYL 248
>gi|384253108|gb|EIE26583.1| Rubisco activase [Coccomyxa subellipsoidea C-169]
Length = 421
Score = 272 bits (696), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 138/308 (44%), Positives = 200/308 (64%), Gaps = 26/308 (8%)
Query: 30 DYRQKVTRSFEYLQGDYYIAPVFMAS--------------------LCIWGGKGQGKSFQ 69
+Y + R+ ++ +YI+P F+ L IWGGKGQGK+FQ
Sbjct: 104 EYLSQAQRTLNNIEDGFYISPPFLDKISIHVAKNFLDLPKIKVPLILGIWGGKGQGKTFQ 163
Query: 70 TELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAG 129
L F+ + I P++MSAGELES AGEP KL+R+RYR AS V++ +GKMS L IND+DAG
Sbjct: 164 CNLAFKKLDINPIVMSAGELESGNAGEPAKLVRQRYREASDVIK-KGKMSSLFINDLDAG 222
Query: 130 LGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYA 188
GR G TQ TVNNQ+V TLMN++DNPT V + +++ +I R+P+I TGNDFST+YA
Sbjct: 223 AGRMGAGTQYTVNNQMVNATLMNIADNPTNVQLPGVYKQEEIP-RVPVICTGNDFSTLYA 281
Query: 189 PLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRT 248
PLIRDGRMEKFYW P+ +D + + +++ DG+ + +V +V TFP Q++DF+GALR+R
Sbjct: 282 PLIRDGRMEKFYWAPSRDDRVGVCMGIFQHDGVNRTDVEHLVDTFPGQSIDFFGALRARV 341
Query: 249 YDRSISKWIDDIGGVENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIME 308
YD + +++ I G+EN+G +L+ R+ K F PE + LL+ G L+ EQ+ +
Sbjct: 342 YDDKVREFVSTI-GLENIGKRLVNSREAKV--TFEKPEMDLNTLLKYGNLLVDEQENVKR 398
Query: 309 TKLSKEYM 316
+L+ Y+
Sbjct: 399 VQLADSYL 406
>gi|115392208|gb|ABI96906.1| chloroplast ribulose-1,5-bisphosphate carboxylase activase
[Triticum aestivum]
Length = 360
Score = 272 bits (696), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 146/318 (45%), Positives = 198/318 (62%), Gaps = 33/318 (10%)
Query: 10 GVIDPLFAGNFLGKDSDIVFDYRQKVTRS-----FEYLQGDYYIAPVFMASLC------- 57
G++D LF + V + V++ F+ G +YIAP FM L
Sbjct: 49 GIVDSLFQAPTGDGTHEAVLSSYEYVSQGLKKYDFDNTMGGFYIAPAFMDKLVVHLSKNF 108
Query: 58 -------------IWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRER 104
IWGGKGQGKSFQ EL+F MGI P+++SAGELES AGEP KLIR+R
Sbjct: 109 MTLPNIKIPRILGIWGGKGQGKSFQCELVFAKMGINPIMLSAGELESGNAGEPAKLIRQR 168
Query: 105 YRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIGQ 163
YR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ+V TLMN++D PT V +
Sbjct: 169 YREAADMIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAPTNVQLPG 227
Query: 164 DWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITK 223
+ + + R+PI+ TGNDFST+YAPLIRDGRMEKFYW P +D + + +++ D ++
Sbjct: 228 MYNKEE-NPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVSD 286
Query: 224 DEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPV-F 282
+ V IV TFP Q++DF+GALR+R D + KW+ G+EN+G +L+ R + PV F
Sbjct: 287 ESVVKIVDTFPGQSIDFFGALRARVNDDEVRKWVTST-GIENIGKRLVNSR---DGPVTF 342
Query: 283 TPPEKTVEALLESGYSLL 300
P+ TVE LLE G+ L+
Sbjct: 343 EQPKMTVEKLLEYGHMLV 360
>gi|255078274|ref|XP_002502717.1| predicted protein [Micromonas sp. RCC299]
gi|226517982|gb|ACO63975.1| predicted protein [Micromonas sp. RCC299]
Length = 396
Score = 271 bits (693), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 139/298 (46%), Positives = 188/298 (63%), Gaps = 42/298 (14%)
Query: 1 MNIAVGARAGVIDPLFAGNF-----LGKDSDIVF-DYRQKVTRSFEYLQGDYYIAPVFMA 54
MN AVGAR GV+D +FAG LG DSDI R + RSF L G++++ F+
Sbjct: 99 MNTAVGARYGVVDDVFAGKNNSKFNLGADSDIASGKLRYTMERSFNNLVGEFHVPKQFVD 158
Query: 55 S-------------------------------LCIWGGKGQGKSFQTELIFQAMGIEPVI 83
L IWG KG GK+F EL +A+G+ PV+
Sbjct: 159 RVALHIAKNLLMDSTNPGVGENALGLTRVPLILGIWGSKGCGKTFNLELACKALGVHPVV 218
Query: 84 MSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQ 143
MSAGELE E AGEPG+LIR RYR A+++++ +GK +CL+INDIDAG+G F TQ TVN Q
Sbjct: 219 MSAGELEDEWAGEPGRLIRRRYRHAAEIMKVRGKATCLIINDIDAGVGWFKQTQATVNTQ 278
Query: 144 IVVGTLMNLSDNPTRVSIGQD-----WRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEK 198
+V+GTLMN+ D+P VS +D +R+ + R+PII TGND ST+YAPL+RDGRM+K
Sbjct: 279 MVMGTLMNICDHPNFVSNEEDDEIHAYRDDEYIRRVPIIITGNDLSTLYAPLLRDGRMDK 338
Query: 199 FYWQPNLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKW 256
FYW P EDI ++VH MY+ D + + V +V+ + +Q LDF+GA+RSR YD +I++W
Sbjct: 339 FYWSPTREDICDMVHAMYKDDDVPRATVERLVQAYSHQPLDFFGAIRSRMYDEAIARW 396
>gi|132167|sp|P23489.1|RCA_CHLRE RecName: Full=Ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic; Short=RA; Short=RuBisCO activase; Flags:
Precursor
gi|167434|gb|AAA33091.1| ribulose 1,5-bisphosphate carboxylase/oxygenase activase
[Chlamydomonas reinhardtii]
gi|227783|prf||1710353A RuBisCO activase
Length = 408
Score = 271 bits (692), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 142/331 (42%), Positives = 208/331 (62%), Gaps = 31/331 (9%)
Query: 11 VIDPLFAGNF-LGKDSDIVF---DYRQKVTRSFEYLQGDYYIAPVFMAS----------- 55
++D LF G F G + V +Y + SF ++ +YI+P F+
Sbjct: 65 MVDDLFQGGFGAGGTHNAVLSSQEYLSQSRASFNNIEDGFYISPAFLDKMTIHIAKNFMD 124
Query: 56 ---------LCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYR 106
L IWGGKGQGK+FQ L ++ +GI P++MSAGELES AGEP KLIR RYR
Sbjct: 125 LPKIKVPLILGIWGGKGQGKTFQCALAYKKLGIAPIVMSAGELESGNAGEPAKLIRTRYR 184
Query: 107 TASQVVQNQGKMSCLMINDIDAGLGRFGNT-QMTVNNQIVVGTLMNLSDNPTRVSIGQDW 165
AS +++ +G+M L IND+DAG GR G+T Q TVNNQ+V TLMN++DNPT V + +
Sbjct: 185 EASDIIK-KGRMCSLFINDLDAGAGRMGDTTQYTVNNQMVNATLMNIADNPTNVQLPGVY 243
Query: 166 RESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITKDE 225
+ +I R+PI+ TGNDFST+YAPLIRDGRMEK+YW P ED + + ++++D + + E
Sbjct: 244 KNEEIP-RVPIVCTGNDFSTLYAPLIRDGRMEKYYWNPTREDRIGVCMGIFQEDNVQRRE 302
Query: 226 VGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVFTPP 285
V ++V TFP Q++DF+GALR+R YD + +WI D GV+ +G +L+ R+ +P +
Sbjct: 303 VENLVDTFPGQSIDFFGALRARVYDDMVRQWITDT-GVDKIGQQLVNARQKVAMPKVS-- 359
Query: 286 EKTVEALLESGYSLLREQQLIMETKLSKEYM 316
+ L++ G SL+ EQ+ + +L+ Y+
Sbjct: 360 -MDLNVLIKYGKSLVDEQENVKRVQLADAYL 389
>gi|159468147|ref|XP_001692244.1| rubisco activase [Chlamydomonas reinhardtii]
gi|38532373|gb|AAR23425.1| rubisco activase [Chlamydomonas reinhardtii]
gi|158278430|gb|EDP04194.1| rubisco activase [Chlamydomonas reinhardtii]
Length = 408
Score = 271 bits (692), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 142/331 (42%), Positives = 208/331 (62%), Gaps = 31/331 (9%)
Query: 11 VIDPLFAGNF-LGKDSDIVF---DYRQKVTRSFEYLQGDYYIAPVFMAS----------- 55
++D LF G F G + V +Y + SF ++ +YI+P F+
Sbjct: 65 MVDDLFQGGFGAGGTHNAVLSSQEYLSQSRASFNNIEDGFYISPAFLDKMTIHIAKNFMD 124
Query: 56 ---------LCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYR 106
L IWGGKGQGK+FQ L ++ +GI P++MSAGELES AGEP KLIR RYR
Sbjct: 125 LPKIKVPLILGIWGGKGQGKTFQCALAYKKLGIAPIVMSAGELESGNAGEPAKLIRTRYR 184
Query: 107 TASQVVQNQGKMSCLMINDIDAGLGRFGNT-QMTVNNQIVVGTLMNLSDNPTRVSIGQDW 165
AS +++ +G+M L IND+DAG GR G+T Q TVNNQ+V TLMN++DNPT V + +
Sbjct: 185 EASDIIK-KGRMCSLFINDLDAGAGRMGDTTQYTVNNQMVNATLMNIADNPTNVQLPGVY 243
Query: 166 RESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITKDE 225
+ +I R+PI+ TGNDFST+YAPLIRDGRMEK+YW P ED + + ++++D + + E
Sbjct: 244 KNEEIP-RVPIVCTGNDFSTLYAPLIRDGRMEKYYWNPTREDRIGVCMGIFQEDNVQRRE 302
Query: 226 VGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVFTPP 285
V ++V TFP Q++DF+GALR+R YD + +WI D GV+ +G +L+ R+ +P +
Sbjct: 303 VENLVDTFPGQSIDFFGALRARVYDDMVRQWITDT-GVDKIGQQLVNARQKVAMPKVS-- 359
Query: 286 EKTVEALLESGYSLLREQQLIMETKLSKEYM 316
+ L++ G SL+ EQ+ + +L+ Y+
Sbjct: 360 -MDLNVLIKYGKSLVDEQENVKRVQLADAYL 389
>gi|412985424|emb|CCO18870.1| predicted protein [Bathycoccus prasinos]
Length = 1026
Score = 270 bits (689), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 162/383 (42%), Positives = 214/383 (55%), Gaps = 67/383 (17%)
Query: 2 NIAVGARAGVIDPLFA-----GNF-LGKDSDIV---FDYRQKVTRSFEYLQGDYYIAPVF 52
N VGA+ G ID +FA G F LG DSDI +R + R F L GDY++ F
Sbjct: 118 NTNVGAKEGKIDDIFARNRGDGEFKLGADSDIANGDLRFRFQEVRQFNNLVGDYFVPEQF 177
Query: 53 MAS---------LC--------------IWGGKGQGKSFQTELIFQAMGIEPVIMSAGEL 89
+ +C +WGGKG GK+F EL + +G+ P++ SAGEL
Sbjct: 178 IEKVALHVCKNFMCAAQPNSPNVPLILGVWGGKGCGKTFNLELACKKLGMMPIVTSAGEL 237
Query: 90 ESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTL 149
E E AG PG+LIR+RYR A +VV+ GKMSCL++NDIDAGLG F +TQ TVNNQ V GTL
Sbjct: 238 EDESAGGPGRLIRQRYRRAGEVVRVHGKMSCLIVNDIDAGLGWFKDTQQTVNNQTVCGTL 297
Query: 150 MNLSDNPTRVSIGQDWRE--SDI-TNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLE 206
MNL D+P VS+G++ RE S++ T RIPII TGND S +YAPL+RDGRMEK+YW P +
Sbjct: 298 MNLCDHPELVSLGEERREDGSNLQTVRIPIIVTGNDLSRLYAPLLRDGRMEKWYWDPQFD 357
Query: 207 DILNIVHRMYEKDGI-TKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWI-------- 257
DI+N+V +++ D + + D+ ++V FPNQ LDF+GA RS YD +I W+
Sbjct: 358 DIVNMVDALFKDDPLWSIDDTRALVAKFPNQPLDFFGATRSTVYDDAIRNWMIGNSKKKN 417
Query: 258 --DD-------------IGGVENLGNKLLKRRKDKELPVFTPPE--------KTVEALLE 294
DD GV+ GN P E T E+++
Sbjct: 418 GYDDQFGQVLMKNLALGTSGVDLFGNVGTDEAPSSAWKYHAPLEIVQSEKTQITTESVMA 477
Query: 295 SGYSLLREQQLIMETKLSKEYMK 317
+ L +Q L+ KLS EYMK
Sbjct: 478 AAKELSNQQDLVNSEKLSVEYMK 500
>gi|380707033|gb|AFD97617.1| rubisco activase (chloroplast) [Ammopiptanthus mongolicus]
Length = 439
Score = 268 bits (686), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 155/333 (46%), Positives = 209/333 (62%), Gaps = 31/333 (9%)
Query: 10 GVIDPLF-AGNFLGKDSDIVFDYRQKVTRSFEYLQGD----YYIAPVFMASLC------- 57
G++D LF A + G ++ Y T EY + +YIAP FM L
Sbjct: 92 GMVDSLFQAPSDAGTHYAVLSSYEYISTGLREYNLDNNVDGFYIAPAFMDKLVVHITKNF 151
Query: 58 -------------IWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRER 104
IWGGKGQGKSFQ EL+F MGI P++MSAGELES AGEP KL+R R
Sbjct: 152 MTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLMRRR 211
Query: 105 YRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIGQ 163
YR A+ +++ +GKM L IN +DAG GR G TQ TVNNQ+V TLMN++DNPT V +
Sbjct: 212 YREAADIIR-KGKMCALFINGLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTSVQLPG 270
Query: 164 DWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITK 223
+ + + + R+PII TGNDFST+YAPLIRDGRMEKFYW P +D + + ++ D IT+
Sbjct: 271 MYNKEE-SPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRVGVCKGIFRTDNITE 329
Query: 224 DEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVFT 283
D+V +V TFP Q++DF+GALR+R YD + KWI I GVE +G KL+ ++ P F
Sbjct: 330 DDVVKLVDTFPGQSIDFFGALRARVYDDEVRKWIGGI-GVEGVGKKLVNSKEGP--PTFE 386
Query: 284 PPEKTVEALLESGYSLLREQQLIMETKLSKEYM 316
P T++ LLE G L++EQ+ + +L+++YM
Sbjct: 387 QPSMTLQKLLEYGNMLVQEQENVKRVQLAEQYM 419
>gi|145353113|ref|XP_001420873.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144581108|gb|ABO99166.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 342
Score = 268 bits (684), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 142/309 (45%), Positives = 186/309 (60%), Gaps = 51/309 (16%)
Query: 2 NIAVGARAGVIDPLFAGNF-----LGKDSDIV---FDYRQKVTRSFEYLQGDYYIAPVFM 53
N VGAR GV+D +F N LG DSDI YR + R F+ L GDY+ P FM
Sbjct: 35 NTNVGARQGVVDDVFTRNATGEFQLGADSDIASGELRYRYQEARKFKNLVGDYHCPPAFM 94
Query: 54 AS-------------------------------------LCIWGGKGQGKSFQTELIFQA 76
L +WGGKG GKSF EL +A
Sbjct: 95 EKVSGHLVKNFLFGGGLRHVREMTNEAGVVVQPPNTPLILGVWGGKGCGKSFNLELACKA 154
Query: 77 MGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNT 136
MG+ P+I SAGELE E AG PG+LIRERY+ A ++++ G MSCL+IND+DAG+G F +T
Sbjct: 155 MGVTPIITSAGELEDENAGAPGRLIRERYKRAGEILRRTGVMSCLIINDVDAGIGWFKDT 214
Query: 137 QMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDI---TNRIPIIFTGNDFSTIYAPLIRD 193
Q TVNNQ V GTLMNL D+P VS+G+D E T R+PII TGND ST+YAPL+RD
Sbjct: 215 QHTVNNQTVCGTLMNLCDHPELVSLGEDRGEDGKNLQTARVPIIVTGNDLSTVYAPLLRD 274
Query: 194 GRMEKFYWQPNLEDILNIVHRMYEKDGI--TKDEVGSIVKTFPNQALDFYGALRSRTYDR 251
GRM+K+YW P+ +DI +IVH ++ KD + + D +V FP Q LDF+GA R++ YD
Sbjct: 275 GRMDKWYWNPSRDDICDIVHALF-KDEVDWSPDATARLVNAFPGQPLDFFGAARAKVYDD 333
Query: 252 SISKWIDDI 260
++S+W+ ++
Sbjct: 334 AVSRWMCEV 342
>gi|428299641|ref|YP_007137947.1| ribulose 1,5-bisphosphate carboxylase small subunit [Calothrix sp.
PCC 6303]
gi|428236185|gb|AFZ01975.1| ribulose 1,5-bisphosphate carboxylase small subunit [Calothrix sp.
PCC 6303]
Length = 425
Score = 264 bits (674), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 136/295 (46%), Positives = 193/295 (65%), Gaps = 25/295 (8%)
Query: 46 YYIAPVFMASLCIW--------------------GGKGQGKSFQTELIFQAMGIEPVIMS 85
YYIAP F+ L + G KG+GKSFQ EL+F+ MGIE ++S
Sbjct: 3 YYIAPRFLDKLAVHITKNFLNIPGVRVPLILGVHGRKGEGKSFQCELVFERMGIEVTLIS 62
Query: 86 AGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGN-TQMTVNNQI 144
GELES AG+P +LIR RYR +++V+ +GKM LMIND+DAG GRF TQ TVN Q+
Sbjct: 63 GGELESPDAGDPARLIRLRYRETAELVKVRGKMCVLMINDLDAGAGRFDEGTQYTVNTQL 122
Query: 145 VVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPN 204
V TLMN++DNPT V + + +S R+PII TGNDFST+YAPLIRDGRMEKFYW+P+
Sbjct: 123 VNATLMNIADNPTDVQLPGSY-DSTPLRRVPIIVTGNDFSTLYAPLIRDGRMEKFYWEPD 181
Query: 205 LEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVE 264
+D + +V ++ DG+++ EV +V TFPNQ++DFY A+RSR YD + +I DI GVE
Sbjct: 182 RDDKVGVVEGIFGDDGLSRREVAQLVDTFPNQSIDFYSAMRSRLYDEQVLHFIHDI-GVE 240
Query: 265 NLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYMKNI 319
N+ +++ + P+F P+ ++ LLE G ++ EQQ + ++L ++Y + +
Sbjct: 241 NVSQRVVN--SAEAAPIFGKPDFSLSRLLEMGNFMVSEQQHVENSQLVEQYNRGL 293
>gi|145346081|ref|XP_001417523.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144577750|gb|ABO95816.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 381
Score = 263 bits (672), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 143/339 (42%), Positives = 213/339 (62%), Gaps = 34/339 (10%)
Query: 8 RAGVIDPLFAGNFLGKDSDIVF-DYRQKVTRSFEYLQGDYYIAPVFMAS----------- 55
R+GV + LF G+ LG D+D+ ++R++ R+F L G +++ F
Sbjct: 48 RSGVEEELFKGSVLGVDADVATGEHREREFRTFAALDG-FHVPERFAERVATHVVKNLLK 106
Query: 56 -------------LCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIR 102
L IWG KG GK+ EL + MG++P++ SAGELE AGEPG ++R
Sbjct: 107 DKGALGATSPALILGIWGHKGCGKTMNVELACKKMGLQPIVTSAGELEDSTAGEPGAMLR 166
Query: 103 ERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIG 162
RY TA++ ++ GK+SCL+INDIDAG+G+F + TVNNQI GTLMN+ DNPT VS G
Sbjct: 167 RRYLTAARAMRETGKLSCLIINDIDAGIGKFKDDLGTVNNQITHGTLMNICDNPTIVSEG 226
Query: 163 QDWR-ESDITN-RIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDG 220
WR +S TN R+PII TGNDFS +YAPL RDGRM+ + W+P ++++ ++H M + DG
Sbjct: 227 LVWRTDSKSTNARVPIIVTGNDFSRLYAPLTRDGRMDLWMWEPTSQELVEMIHAMMKDDG 286
Query: 221 ITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKL--LKRRKDKE 278
+T ++V TFPNQ LDF+GALR+R YD ++S ++ ++ G++ L + L L R+ +
Sbjct: 287 LTTACCETLVATFPNQPLDFFGALRARVYDDAVSDFVFNV-GLDGLNDSLVGLDERRRLK 345
Query: 279 LPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYMK 317
L T T+E LL G +++ EQ+ + +L++EYM+
Sbjct: 346 LGDVT---ITLERLLACGRNVVGEQENVNNIQLAREYMR 381
>gi|3687652|gb|AAC62207.1| rubisco activase precursor [Datisca glomerata]
Length = 373
Score = 262 bits (670), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 138/286 (48%), Positives = 182/286 (63%), Gaps = 28/286 (9%)
Query: 10 GVIDPLFAGNF-LGKDSDIVFDYRQKVTRSFEYLQGD---YYIAPVFMASLC-------- 57
G++D LF G ++ Y T +YL + +YIAP FM L
Sbjct: 91 GMVDSLFQAPMQTGTHYAVMSSYEYLSTGLRQYLDNNMDGFYIAPAFMDKLVVHITKNFM 150
Query: 58 ------------IWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERY 105
IWGGKGQGKSFQ EL+F MGI P++MSAGELES AGEP KLIR+R
Sbjct: 151 TLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRC 210
Query: 106 RTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIGQD 164
R A+ +++ +GKMSCL IND+DAG GR G TQ TVNNQ+V TLMN++DNPT V +
Sbjct: 211 REAADIIK-KGKMSCLFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGM 269
Query: 165 WRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITKD 224
+ + + R+PII TGNDFST+YAPLIRDGRMEKFYW P ED + + ++ D + K+
Sbjct: 270 YNKEE-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCTGIFRSDNVAKE 328
Query: 225 EVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKL 270
++ +V TFP Q++DF+GALR+R YD + KWI + GV+++G L
Sbjct: 329 DIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGV-GVQDVGKSL 373
>gi|411118859|ref|ZP_11391239.1| ribulose bisphosphate carboxylase small subunit [Oscillatoriales
cyanobacterium JSC-12]
gi|410710722|gb|EKQ68229.1| ribulose bisphosphate carboxylase small subunit [Oscillatoriales
cyanobacterium JSC-12]
Length = 507
Score = 261 bits (666), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 130/263 (49%), Positives = 187/263 (71%), Gaps = 5/263 (1%)
Query: 56 LCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQ 115
L + G KG+GKSFQ EL+F+ MG+ V MSAGELES AG+P +LIR RYR A+++V+ +
Sbjct: 92 LGVHGRKGEGKSFQCELVFERMGVNVVHMSAGELESPDAGDPARLIRLRYREAAELVKVR 151
Query: 116 GKMSCLMINDIDAGLGRFGN-TQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRI 174
GKM+ LMINDIDAG GR TQ TVN Q+V GTLMN++DNPT V + + +S+ RI
Sbjct: 152 GKMAVLMINDIDAGAGRVDQYTQYTVNTQLVNGTLMNIADNPTNVQLPGSY-DSEPIQRI 210
Query: 175 PIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITKDEVGSIVKTFP 234
PII TGNDFST+Y PL+RDGRMEKFYW+PN +D + IV +++ D +++ ++ +V TFP
Sbjct: 211 PIIVTGNDFSTLYQPLVRDGRMEKFYWEPNWDDRVGIVAGIFQVDPVSRADIEKLVDTFP 270
Query: 235 NQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVFTPPEKTVEALLE 294
NQA+DF+GALRSR +D I +I + G+E + +++ ++ P F P+ ++ L+E
Sbjct: 271 NQAIDFFGALRSRLFDEQIRNFIHSV-GIERVSQRVVNSKEAP--PEFKKPDFSLPHLIE 327
Query: 295 SGYSLLREQQLIMETKLSKEYMK 317
G ++ EQ+ + E+ L++EY K
Sbjct: 328 VGNQMVYEQKRVQESGLAQEYNK 350
>gi|149941202|emb|CAO02533.1| putative rubisco activase [Vigna unguiculata]
Length = 251
Score = 259 bits (661), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 129/244 (52%), Positives = 167/244 (68%), Gaps = 25/244 (10%)
Query: 36 TRSFEYLQGDYYIAPVFMASLC--------------------IWGGKGQGKSFQTELIFQ 75
T +F+ ++ YYIAP FM L IWGGKGQGKSFQ EL+F
Sbjct: 9 TYNFDNMKDGYYIAPAFMDKLVVHITKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFA 68
Query: 76 AMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG- 134
MGI P++MSAGELES AGEP KLIR+RYR A+ +++ +GKM L IND+DAG GR G
Sbjct: 69 KMGINPIVMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCALFINDLDAGAGRLGG 127
Query: 135 NTQMTVNNQIVVGTLMNLSDNPTRVSI-GQDWRESDITNRIPIIFTGNDFSTIYAPLIRD 193
TQ TVNNQ+V TLMN++DNPT V + G +E ++ R+PII TGNDFST+YAPLIRD
Sbjct: 128 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENL--RVPIIVTGNDFSTLYAPLIRD 185
Query: 194 GRMEKFYWQPNLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSI 253
GRMEKFYW P +D + + ++ DG+ ++EV +V TFP Q++DF+GALR+R YD +
Sbjct: 186 GRMEKFYWAPTRDDRVGVCKGIFRTDGVPEEEVTKLVDTFPGQSIDFFGALRARVYDDEV 245
Query: 254 SKWI 257
KW+
Sbjct: 246 RKWV 249
>gi|3687676|gb|AAC62215.1| rubisco activase precursor [Datisca glomerata]
Length = 244
Score = 258 bits (660), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 129/246 (52%), Positives = 167/246 (67%), Gaps = 24/246 (9%)
Query: 46 YYIAPVFMASLC--------------------IWGGKGQGKSFQTELIFQAMGIEPVIMS 85
+YIAP FM L IWGGKGQGKSFQ EL+F MGI P++MS
Sbjct: 2 FYIAPAFMDKLVVHITKNFMTFPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 61
Query: 86 AGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQI 144
AGELES AGEP KLIR+R R A+ +++ +GKMSCL IND+DAG GR G TQ TVNNQ+
Sbjct: 62 AGELESGNAGEPAKLIRQRCREAADIIK-KGKMSCLFINDLDAGAGRLGGTTQYTVNNQM 120
Query: 145 VVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPN 204
V TLMN++DNPT V + + + + R+PII TGNDFST+YAPLIRDGRMEKFYW P
Sbjct: 121 VNATLMNIADNPTNVQLPGMYNKEE-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT 179
Query: 205 LEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVE 264
ED + + ++ D + K+++ +V TFP Q++DF+GALR+R YD + KWI + GV+
Sbjct: 180 REDRIGVCTGIFRSDNVAKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGV-GVQ 238
Query: 265 NLGNKL 270
++G L
Sbjct: 239 DVGKSL 244
>gi|427419082|ref|ZP_18909265.1| ribulose bisphosphate carboxylase small subunit [Leptolyngbya sp.
PCC 7375]
gi|425761795|gb|EKV02648.1| ribulose bisphosphate carboxylase small subunit [Leptolyngbya sp.
PCC 7375]
Length = 428
Score = 258 bits (660), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 135/296 (45%), Positives = 195/296 (65%), Gaps = 26/296 (8%)
Query: 46 YYIAPVFMASLC--------------------IWGGKGQGKSFQTELIFQAMGIEPVIMS 85
YYI+P F+ +L I G KG+GK+FQ EL+++ MG+ V +S
Sbjct: 3 YYISPRFLNALAVHITKNFLELPQVKLPLIFGIHGRKGEGKTFQCELVYKRMGVNVVHIS 62
Query: 86 AGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRF-GNTQMTVNNQI 144
GELES AG+P +LIR RYR A+ +V+ +G+M+ LMIND+DAG GRF G TQ TVN Q+
Sbjct: 63 GGELESPDAGDPARLIRLRYREAADLVKIRGEMAVLMINDLDAGAGRFDGMTQYTVNTQL 122
Query: 145 VVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPN 204
V TLMN++DNPT V + + E+ + RIPI+ TGNDF+T+YAPL+RDGRM+KFYW+PN
Sbjct: 123 VNNTLMNIADNPTNVQLPGSYDETPLP-RIPIVVTGNDFATLYAPLVRDGRMQKFYWEPN 181
Query: 205 LEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVE 264
+D L IV ++ D ++++++ ++V TFPNQA+DFYGALRS+ YD I +I + GVE
Sbjct: 182 RDDRLGIVGGIFSPDDLSRNDIETLVDTFPNQAIDFYGALRSQIYDEQIIDFIHRV-GVE 240
Query: 265 NLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYMKNID 320
N+ ++ K P F P+ + L+E G L+REQ+ + E L +EY + ++
Sbjct: 241 NVSRNVV---NTKTPPSFKKPDFRIGHLIEVGQRLVREQRRLQEMGLVQEYNQALN 293
>gi|332710946|ref|ZP_08430882.1| ribulose 1,5-bisphosphate carboxylase small subunit [Moorea
producens 3L]
gi|332350260|gb|EGJ29864.1| ribulose 1,5-bisphosphate carboxylase small subunit [Moorea
producens 3L]
Length = 448
Score = 257 bits (657), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 136/291 (46%), Positives = 189/291 (64%), Gaps = 25/291 (8%)
Query: 46 YYIAPVFMASLC--------------------IWGGKGQGKSFQTELIFQAMGIEPVIMS 85
YYI+P F+ L I G KG+GKSFQ EL+F+ MGIE V MS
Sbjct: 5 YYISPRFIDKLAVHITKNFLDIPHVRVPLILGIHGRKGEGKSFQCELVFERMGIEAVHMS 64
Query: 86 AGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGN-TQMTVNNQI 144
+GELES AG+P +LIR RYR +++++ +GKM LMIND+DAG GRF TQ TVN Q+
Sbjct: 65 SGELESPDAGDPARLIRLRYRETAEMIRVKGKMCVLMINDLDAGAGRFDERTQYTVNTQL 124
Query: 145 VVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPN 204
V GTLMN++DNPT V + + +S +R+PII TGNDFST+YAPL RDGRM KFYW+PN
Sbjct: 125 VHGTLMNIADNPTNVQLPGSY-DSQPIHRVPIIVTGNDFSTLYAPLTRDGRMSKFYWEPN 183
Query: 205 LEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVE 264
ED + IV ++ DG++ E+ ++ TF NQA+DF+ ALRSR YD I K+I DI G++
Sbjct: 184 REDRIGIVSGIFHGDGLSSGEIEQLIDTFDNQAIDFFSALRSRIYDEQIRKFIYDI-GID 242
Query: 265 NLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEY 315
+ ++++ ++ P F P ++ L+E G + EQQ + + L++EY
Sbjct: 243 RVSSRVVNSKQGP--PKFETPNFSISRLIEFGELIKAEQQRLELSGLAREY 291
>gi|434391832|ref|YP_007126779.1| ribulose 1,5-bisphosphate carboxylase small subunit [Gloeocapsa sp.
PCC 7428]
gi|428263673|gb|AFZ29619.1| ribulose 1,5-bisphosphate carboxylase small subunit [Gloeocapsa sp.
PCC 7428]
Length = 462
Score = 257 bits (657), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 134/291 (46%), Positives = 191/291 (65%), Gaps = 25/291 (8%)
Query: 46 YYIAPVFMASLC--------------------IWGGKGQGKSFQTELIFQAMGIEPVIMS 85
YYI+P F+ L I G KG+GK+FQ EL+F+ MGIE + +S
Sbjct: 3 YYISPRFLDKLAVHITKNFLDLPGIRVPLILGIHGRKGEGKTFQCELVFERMGIEVIHIS 62
Query: 86 AGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGN-TQMTVNNQI 144
GELES AG+P +LIR RYR A+++++ +GKM LMIND+DAG GRF TQ TVN Q+
Sbjct: 63 GGELESPDAGDPARLIRLRYREAAELIKVRGKMVALMINDLDAGAGRFDEGTQYTVNTQL 122
Query: 145 VVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPN 204
V TLMN++DNPT V + + +S +R+PII TGNDFST+YAPLIR+GRMEKFYW+P+
Sbjct: 123 VNATLMNIADNPTDVQLPGSY-DSTPLHRVPIIVTGNDFSTLYAPLIREGRMEKFYWEPD 181
Query: 205 LEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVE 264
+D + IV ++ +DG++ EV +V FP+QA+DF+ ALRSR YD I ++I + G+E
Sbjct: 182 RDDKIGIVGGIFAEDGLSAQEVTQLVDAFPDQAIDFFSALRSRVYDEQIRRFIHET-GIE 240
Query: 265 NLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEY 315
+ +++ + PVF P+ + LLESG +++EQQ + ++L EY
Sbjct: 241 RVSLRVVNSTEGP--PVFQKPDFRLSHLLESGNFMVQEQQRVESSRLVHEY 289
>gi|443313470|ref|ZP_21043081.1| ribulose bisphosphate carboxylase small subunit [Synechocystis sp.
PCC 7509]
gi|442776413|gb|ELR86695.1| ribulose bisphosphate carboxylase small subunit [Synechocystis sp.
PCC 7509]
Length = 498
Score = 257 bits (656), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 139/297 (46%), Positives = 188/297 (63%), Gaps = 25/297 (8%)
Query: 46 YYIAPVFMASLC--------------------IWGGKGQGKSFQTELIFQAMGIEPVIMS 85
YYI+P F+ L I G KG+GKSFQ EL+F+ MGIE + MS
Sbjct: 3 YYISPSFLDKLAVHITKNFLELPGVRVPLILGIHGRKGEGKSFQCELVFERMGIEAIHMS 62
Query: 86 AGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGN-TQMTVNNQI 144
AGELES AG+PG+L+R RYR AS++ + +GKM LMIND+DAG GRF TQ TVN Q+
Sbjct: 63 AGELESPDAGDPGRLVRLRYREASELSKVRGKMCVLMINDLDAGAGRFDRGTQYTVNTQL 122
Query: 145 VVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPN 204
V GTLMN++DNPT V + + +S RIPII TGNDFST+YAPLIRDGRMEKF+W+PN
Sbjct: 123 VNGTLMNIADNPTDVQLPGSY-DSTPLQRIPIIVTGNDFSTLYAPLIRDGRMEKFFWEPN 181
Query: 205 LEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVE 264
+D + IV ++E DG+ K ++ +V TF NQ +DF+ ALRSR YD I +I G E
Sbjct: 182 RDDKVGIVSGIFEPDGLPKRDIEKLVDTFLNQPIDFFSALRSRIYDEQIRDFIHTT-GFE 240
Query: 265 NLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYMKNIDD 321
+ +++ + P F P + L+E G +++EQQ + + L +EY + + D
Sbjct: 241 KVSLRVVN--STEAAPTFAKPNFQLPRLIEYGNLMVKEQQRVENSGLVREYNQVLQD 295
>gi|410927414|gb|AFV93495.1| chloroplast ribulose bisphosphate carboxylase/oxygenase activase
beta1, partial [Gossypium barbadense]
Length = 296
Score = 256 bits (655), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 126/237 (53%), Positives = 161/237 (67%), Gaps = 23/237 (9%)
Query: 46 YYIAPVFMASLC--------------------IWGGKGQGKSFQTELIFQAMGIEPVIMS 85
+YIAP FM L IWGGKGQGKSFQ EL+F MGI P++MS
Sbjct: 59 FYIAPAFMDKLVVHITKNYMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 118
Query: 86 AGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQI 144
AGELES AGEP KLIR+RYR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ+
Sbjct: 119 AGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQM 177
Query: 145 VVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPN 204
V TLMN++DNPT V + + + + R+PII TGNDFST+YAPLIRDGRMEKFYW P
Sbjct: 178 VNATLMNIADNPTNVQLPGMYNKEE-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT 236
Query: 205 LEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIG 261
ED + + ++ D + D++ +V TFP Q++DF+GALR+R YD + KWI ++G
Sbjct: 237 REDRIGVCTGIFRTDNVPVDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWIGEVG 293
>gi|410927420|gb|AFV93496.1| chloroplast ribulose bisphosphate carboxylase/oxygenase activase
beta2, partial [Gossypium barbadense]
Length = 296
Score = 256 bits (655), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 132/260 (50%), Positives = 169/260 (65%), Gaps = 35/260 (13%)
Query: 35 VTRSFEYL-QG-----------DYYIAPVFMASLCI--------------------WGGK 62
V S+EYL QG +YIAP FM L + WGGK
Sbjct: 36 VMSSYEYLSQGLRTYDLDNNMDGFYIAPAFMDKLVVHITKNFMTLPNIKVPLILGVWGGK 95
Query: 63 GQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLM 122
GQGKSFQ EL+F MGI P++MSAGELES AGEP KLIR+RYR A+ +++ +GKM CL
Sbjct: 96 GQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLF 154
Query: 123 INDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGN 181
IND+DAG GR G TQ TVNNQ+V TLMN++DNPT V + + + + R+PII TGN
Sbjct: 155 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEE-NPRVPIIVTGN 213
Query: 182 DFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFY 241
DFST+YAPLIRDGRMEKFYW P ED + + ++ D + D++ +V TFP Q++DF+
Sbjct: 214 DFSTLYAPLIRDGRMEKFYWAPTREDRIGVCTGIFRTDNVPVDDLVKLVDTFPGQSIDFF 273
Query: 242 GALRSRTYDRSISKWIDDIG 261
GALR+R YD + KWI ++G
Sbjct: 274 GALRARVYDDEVRKWIGEVG 293
>gi|414076620|ref|YP_006995938.1| ribulose bisphosphate carboxylase activase [Anabaena sp. 90]
gi|413970036|gb|AFW94125.1| ribulose bisphosphate carboxylase activase [Anabaena sp. 90]
Length = 407
Score = 256 bits (654), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 134/291 (46%), Positives = 188/291 (64%), Gaps = 25/291 (8%)
Query: 46 YYIAPVFMASLC--------------------IWGGKGQGKSFQTELIFQAMGIEPVIMS 85
YYIAP F+ L I G KG+GK+FQ EL+F+ MGIE ++S
Sbjct: 3 YYIAPSFLDKLAVHITKNFLNIPGIRVPLILGIHGRKGEGKTFQCELVFEKMGIEVTLIS 62
Query: 86 AGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGN-TQMTVNNQI 144
GELES AG+P +LIR RYR +++++ +GKM LMIND+DAG GRF TQ TVN Q+
Sbjct: 63 GGELESPDAGDPARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEGTQYTVNTQL 122
Query: 145 VVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPN 204
V TLMN++DNPT V + + +S+ R+PII TGNDFST+YAPLIRDGRM+KFYW+PN
Sbjct: 123 VNATLMNIADNPTDVQLPGSY-DSNPLCRVPIIVTGNDFSTLYAPLIRDGRMDKFYWEPN 181
Query: 205 LEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVE 264
+D + IV ++ +DG+++ E+ V TFP+Q++DF+ ALRSR YD I +I I G E
Sbjct: 182 RDDKVGIVGGIFAEDGLSQKEIAQFVDTFPHQSIDFFSALRSRIYDEQIRHFIHKI-GFE 240
Query: 265 NLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEY 315
N+ +++ + P F P+ T+ L+ESG ++ EQ+ + + L EY
Sbjct: 241 NVSLRVVNSLEGP--PAFKKPDFTLSHLIESGKFMVGEQKRVETSHLVDEY 289
>gi|296086200|emb|CBI31641.3| unnamed protein product [Vitis vinifera]
Length = 411
Score = 256 bits (654), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 127/252 (50%), Positives = 169/252 (67%), Gaps = 24/252 (9%)
Query: 46 YYIAPVFMASLC--------------------IWGGKGQGKSFQTELIFQAMGIEPVIMS 85
+YIAP FM L IWGGKGQGKSFQ EL+F MGI P++MS
Sbjct: 132 FYIAPAFMDKLVVHITKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFSKMGINPIMMS 191
Query: 86 AGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQI 144
AGELES AGEP KLIR+RYR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ+
Sbjct: 192 AGELESGNAGEPAKLIRQRYREAADIIR-KGKMCCLFINDLDAGAGRLGGTTQYTVNNQM 250
Query: 145 VVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPN 204
V TLMN++DNPT V + + + + R+P+I TGNDFST+YAPLIRDGRMEKFYW P
Sbjct: 251 VNATLMNIADNPTNVQLPGMYNKEE-NPRVPVIVTGNDFSTLYAPLIRDGRMEKFYWAPT 309
Query: 205 LEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVE 264
ED + + ++ D + +++ +V TFP Q++DF+GALR+R YD + WI I GV+
Sbjct: 310 REDRIGVCTGIFRTDNVPVEDIVKLVDTFPGQSIDFFGALRARVYDDMVRDWIAGI-GVD 368
Query: 265 NLGNKLLKRRKD 276
G+ L++ +++
Sbjct: 369 TYGSMLVQEQEN 380
>gi|113475266|ref|YP_721327.1| ribulose 1,5-bisphosphate carboxylase small subunit [Trichodesmium
erythraeum IMS101]
gi|110166314|gb|ABG50854.1| ribulose 1,5-bisphosphate carboxylase small subunit [Trichodesmium
erythraeum IMS101]
Length = 423
Score = 256 bits (654), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 136/294 (46%), Positives = 191/294 (64%), Gaps = 25/294 (8%)
Query: 46 YYIAPVFMASLC--------------------IWGGKGQGKSFQTELIFQAMGIEPVIMS 85
YYI+P F+ L I G KG+GK+FQ +L+F+ MGIEPV +S
Sbjct: 3 YYISPRFIDKLAVHITKNFLEIPRIRVPLIIGIHGRKGEGKTFQCQLVFEKMGIEPVTIS 62
Query: 86 AGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRF-GNTQMTVNNQI 144
GELES+ AG+P +L+R RYR AS+ V+ QG+M L IND+DAG GRF G TQ TVN Q+
Sbjct: 63 GGELESKDAGDPARLLRLRYREASEKVKVQGRMCALFINDLDAGAGRFDGGTQYTVNTQL 122
Query: 145 VVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPN 204
V TLMN++DNPT V + + E+ + +RIPII TGNDFST+YAPLIRDGRMEKFYW+PN
Sbjct: 123 VNATLMNIADNPTNVQLPGSYDETPL-HRIPIIVTGNDFSTLYAPLIRDGRMEKFYWEPN 181
Query: 205 LEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVE 264
ED + IV +++ D ++ ++ +++ F +QA+DF+ ALRSR YD I +I + G+E
Sbjct: 182 REDRVGIVGSIFKTDELSTGDIDNLIDEFSDQAIDFFSALRSRIYDEQIRDFIHQV-GIE 240
Query: 265 NLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYMKN 318
+ +++ +++P F P V LLE G ++ EQ+ I E L +EY K+
Sbjct: 241 KISRRVVN--SVEKIPDFPQPTFNVSRLLEYGKIMVGEQERIRELGLVEEYNKS 292
>gi|428310574|ref|YP_007121551.1| ribulose bisphosphate carboxylase small subunit [Microcoleus sp.
PCC 7113]
gi|428252186|gb|AFZ18145.1| ribulose bisphosphate carboxylase small subunit [Microcoleus sp.
PCC 7113]
Length = 437
Score = 256 bits (653), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 136/291 (46%), Positives = 188/291 (64%), Gaps = 25/291 (8%)
Query: 46 YYIAPVFMASLC--------------------IWGGKGQGKSFQTELIFQAMGIEPVIMS 85
YYI+P F+ L I G KG+GKSFQ EL+F+ MG+E V MS
Sbjct: 3 YYISPRFLNKLSVHITKNYLDLPGVRVPLILGIHGRKGEGKSFQCELVFERMGVEAVHMS 62
Query: 86 AGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGN-TQMTVNNQI 144
AGELES AG+P +LIR RYR A+++++ +GKM+ LMIND+DAG GRF TQ TVN Q+
Sbjct: 63 AGELESPDAGDPARLIRLRYREAAELIRVRGKMAVLMINDLDAGAGRFDQGTQYTVNTQL 122
Query: 145 VVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPN 204
V GTLMN++DNPT V + + +S +R+PI+ TGNDFST+YAPLIRDGRMEKFYW+P+
Sbjct: 123 VNGTLMNIADNPTDVQLPGSY-DSTPLHRVPILVTGNDFSTLYAPLIRDGRMEKFYWEPD 181
Query: 205 LEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVE 264
ED + IV ++ +DG+ + ++ +V TFP Q +DF+ ALRSR YD I ++I I G E
Sbjct: 182 REDRIGIVSGIFSEDGLPRQQIEQLVDTFPGQPIDFFSALRSRIYDEQILQFIQKI-GFE 240
Query: 265 NLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEY 315
+ ++++ +E P F P + L+E G L EQ+ + L +EY
Sbjct: 241 RISSRIVN--SAEEAPKFPKPNFNLSRLIEFGNLLRGEQKQVENMGLVREY 289
>gi|149941206|emb|CAO02535.1| putative rubisco activase [Vigna unguiculata]
Length = 244
Score = 255 bits (652), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 129/248 (52%), Positives = 168/248 (67%), Gaps = 26/248 (10%)
Query: 42 LQGDYYIAPVFMASLC--------------------IWGGKGQGKSFQTELIFQAMGIEP 81
++ YYIAP FM L IWGGKGQGKSFQ EL+F MGI P
Sbjct: 1 MKDGYYIAPAFMDKLVVHITKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINP 60
Query: 82 VIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTV 140
++MSAGELES AGEP KLIR+RYR A+ +++ +GKM L IND+DAG GR G TQ TV
Sbjct: 61 IVMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCALFINDLDAGAGRLGGTTQYTV 119
Query: 141 NNQIVVGTLMNLSDNPTRVSI-GQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKF 199
NNQ+V TLMN++DNPT V + G +E ++ R+PII TGNDFST+YAPLIRDGRMEKF
Sbjct: 120 NNQMVNATLMNIADNPTNVQLPGMYNKEENL--RVPIIVTGNDFSTLYAPLIRDGRMEKF 177
Query: 200 YWQPNLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDD 259
YW P +D + + ++ DG+ + EV +V TFP Q++DF+GALR++ YD + KW+
Sbjct: 178 YWAPTRDDRVGVCKGIFRTDGVPEKEVTKLVDTFPGQSIDFFGALRAKVYDDEVRKWVSG 237
Query: 260 IGGVENLG 267
+ GV+ +G
Sbjct: 238 V-GVDGIG 244
>gi|220909662|ref|YP_002484973.1| ribulose bisphosphate carboxylase small chain [Cyanothece sp. PCC
7425]
gi|219866273|gb|ACL46612.1| ribulose bisphosphate carboxylase small chain [Cyanothece sp. PCC
7425]
Length = 423
Score = 254 bits (648), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 138/293 (47%), Positives = 187/293 (63%), Gaps = 25/293 (8%)
Query: 46 YYIAPVFMASLC--------------------IWGGKGQGKSFQTELIFQAMGIEPVIMS 85
YYIAP F+ L I G KG+GK+F EL+F+ MGI V MS
Sbjct: 3 YYIAPRFLDKLSVHITKNYLDLPNVKVPLILGIHGRKGEGKTFMCELVFKRMGIGVVYMS 62
Query: 86 AGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQI 144
AGELES AG+P +LIR RYR A + + G+M+ LMIND+DAG+GR TQ TVN Q+
Sbjct: 63 AGELESPDAGDPSRLIRLRYREAGEWSKVNGRMAALMINDVDAGIGRVDETTQYTVNTQL 122
Query: 145 VVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPN 204
V TLMN++DNPT V + + + + T RIPII TGNDFST+YAPLIRDGRMEKFYW+P+
Sbjct: 123 VNATLMNIADNPTNVQLPGSY-DQEPTRRIPIILTGNDFSTMYAPLIRDGRMEKFYWEPD 181
Query: 205 LEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVE 264
D L IV ++ D I E+ +V +FP+Q++DF+GALRSR YD I + I ++ G+E
Sbjct: 182 RSDRLGIVQGIFALDQIPDPEIEKLVDSFPDQSIDFFGALRSRLYDEQIRQLIQEV-GIE 240
Query: 265 NLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYMK 317
+ +++ + LP F P ++ L+E G ++REQQ I E +LS+EY +
Sbjct: 241 RISPRVVN--SAEPLPEFRRPNFSLPHLIEIGQLMVREQQRIRELRLSEEYNR 291
>gi|427728382|ref|YP_007074619.1| ribulose bisphosphate carboxylase small subunit [Nostoc sp. PCC
7524]
gi|427364301|gb|AFY47022.1| ribulose bisphosphate carboxylase small subunit [Nostoc sp. PCC
7524]
Length = 415
Score = 254 bits (648), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 134/293 (45%), Positives = 189/293 (64%), Gaps = 25/293 (8%)
Query: 46 YYIAPVFMASLC--------------------IWGGKGQGKSFQTELIFQAMGIEPVIMS 85
YYIAP F+ L I G KG+GK+FQ EL F+ MG+E ++S
Sbjct: 3 YYIAPRFLDKLAVHITKNFLNLPGVRVPLILGIHGRKGEGKTFQCELAFEKMGVEVTLIS 62
Query: 86 AGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGN-TQMTVNNQI 144
GELES AG+P +LIR RYR +++++ +GKM LMIND+DAG GRF TQ TVN Q+
Sbjct: 63 GGELESPDAGDPARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEGTQYTVNTQL 122
Query: 145 VVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPN 204
V TLMN++DNPT V + + +S R+PII TGNDFST+YAPLIRDGRMEKFYW+PN
Sbjct: 123 VNATLMNIADNPTDVQLPGSY-DSTPLRRVPIIVTGNDFSTLYAPLIRDGRMEKFYWEPN 181
Query: 205 LEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVE 264
+D + IV ++ +DG+++ EV +V TFPNQ++DF+ ALRSR YD I +I + G E
Sbjct: 182 RDDKVGIVGGIFGEDGLSQREVEQLVDTFPNQSIDFFSALRSRIYDEQIRNFIHQV-GFE 240
Query: 265 NLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYMK 317
++ +++ + P F PE ++ L+ESG ++ EQ+ + ++L EY +
Sbjct: 241 HVSLRVVNSLEGP--PAFKKPEFSLSHLIESGNFMVGEQKRVETSQLVDEYNR 291
>gi|75910107|ref|YP_324403.1| ribulose 1,5-bisphosphate carboxylase small subunit [Anabaena
variabilis ATCC 29413]
gi|75703832|gb|ABA23508.1| ribulose 1,5-bisphosphate carboxylase small subunit [Anabaena
variabilis ATCC 29413]
Length = 414
Score = 253 bits (646), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 135/293 (46%), Positives = 188/293 (64%), Gaps = 25/293 (8%)
Query: 46 YYIAPVFMASLC--------------------IWGGKGQGKSFQTELIFQAMGIEPVIMS 85
YYIAP F+ L I G KG+GK+FQ EL F+ MGIE ++S
Sbjct: 3 YYIAPRFLDKLAVHITKNFLNIPGVRVPLILGIHGRKGEGKTFQCELAFEKMGIEVTLIS 62
Query: 86 AGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGN-TQMTVNNQI 144
GELES AG+P +LIR RYR +++++ +GKM LMIND+DAG GRF TQ TVN Q+
Sbjct: 63 GGELESPDAGDPARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEGTQYTVNTQL 122
Query: 145 VVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPN 204
V TLMN++DNPT V + + +S+ R+PII TGNDFST+YAPLIRDGRMEKFYW+PN
Sbjct: 123 VNATLMNIADNPTDVQLPGSY-DSNPIRRVPIIVTGNDFSTLYAPLIRDGRMEKFYWEPN 181
Query: 205 LEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVE 264
+D + IV ++ +DG++K E+ +V TFP Q++DF+ ALRSR YD I +I + G E
Sbjct: 182 RDDKVGIVGGIFAEDGLSKREIEQLVDTFPKQSIDFFSALRSRIYDEQIRDFIHQV-GFE 240
Query: 265 NLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYMK 317
+ +++ + P F P+ ++ L+ESG +L EQQ + ++L EY +
Sbjct: 241 RISLRVVNSVEAP--PEFKKPDFSLAHLIESGNLVLGEQQRVDNSQLVDEYNR 291
>gi|300868066|ref|ZP_07112703.1| Ribulose bisphosphate carboxylase/oxygenase activase [Oscillatoria
sp. PCC 6506]
gi|300333904|emb|CBN57881.1| Ribulose bisphosphate carboxylase/oxygenase activase [Oscillatoria
sp. PCC 6506]
Length = 425
Score = 253 bits (645), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 131/294 (44%), Positives = 188/294 (63%), Gaps = 25/294 (8%)
Query: 46 YYIAPVFMAS--------------------LCIWGGKGQGKSFQTELIFQAMGIEPVIMS 85
YYI+P F+ L I G KG+GK+FQ EL F+ +G EPV +S
Sbjct: 3 YYISPSFLDKVAVHITKNFLDLPGVRVPLILGIHGRKGEGKTFQCELAFERLGFEPVTIS 62
Query: 86 AGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRF-GNTQMTVNNQI 144
GELES AG+P +LIR RYR A++ ++ +G+M + IND+DAG GRF TQ TVN Q+
Sbjct: 63 GGELESPDAGDPARLIRLRYREAAEQIRVRGEMCAIFINDLDAGAGRFDSTTQYTVNTQL 122
Query: 145 VVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPN 204
V TLMN++DNPT V + + ++ + +R+PII TGNDF+T+YAPLIRDGRMEKFYW+PN
Sbjct: 123 VNATLMNIADNPTNVQLPGSYDDTPL-HRVPIIVTGNDFATLYAPLIRDGRMEKFYWEPN 181
Query: 205 LEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVE 264
+D + IV ++E DG+ + E+ V FP+QA+DF+ ALRSR YD I ++I I G+E
Sbjct: 182 RDDKIGIVSGIFEADGMPQSEIAEFVDAFPDQAIDFFSALRSRIYDEQIREFIHGI-GIE 240
Query: 265 NLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYMKN 318
+ +L+ + P F P ++ L+E G +++ +Q I E +L +EY +N
Sbjct: 241 KVSKRLVNSL--EAAPHFPKPNFSLSRLIEIGRAMVGQQYRIKEMRLVEEYNQN 292
>gi|86605146|ref|YP_473909.1| ribulose bisphosphate carboxylase/oxygenase activase [Synechococcus
sp. JA-3-3Ab]
gi|86553688|gb|ABC98646.1| ribulose bisphosphate carboxylase/oxygenase activase [Synechococcus
sp. JA-3-3Ab]
Length = 407
Score = 253 bits (645), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 128/292 (43%), Positives = 189/292 (64%), Gaps = 25/292 (8%)
Query: 46 YYIAPVFMAS--------------------LCIWGGKGQGKSFQTELIFQAMGIEPVIMS 85
YYI P F+ L I G KG+GK+FQ LIF+ M + V +S
Sbjct: 3 YYIPPTFLKVVALHLTKNHLPLPDVPVPLILGIHGRKGEGKTFQCNLIFERMKVYAVHIS 62
Query: 86 AGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGN-TQMTVNNQI 144
GELES AG+P ++IR RYR A++ ++ G+M+ LMIND+DAG GR + TQ TVN Q+
Sbjct: 63 GGELESPDAGDPARMIRLRYREAAEHIRKFGQMAVLMINDLDAGAGRLNSMTQYTVNTQL 122
Query: 145 VVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPN 204
V TLMN++DNPT V + + + R+PII TGNDFST+YAPLIRDGRM KFYW+P+
Sbjct: 123 VSATLMNIADNPTNVQLPGSYDPKPLP-RVPIIATGNDFSTLYAPLIRDGRMRKFYWEPS 181
Query: 205 LEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVE 264
D ++IVH +++ DG++ +E+ +V FP QA+DF+GALR++ YD + ++I ++ G+E
Sbjct: 182 RTDRIHIVHGIFQADGLSLEEIERLVDAFPEQAIDFFGALRAQLYDEQVWQFIQEV-GLE 240
Query: 265 NLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYM 316
+ +LLK ++ P F PP ++E L+++G+ L EQ + +LS+EY+
Sbjct: 241 GIAFRLLKSKEGA--PQFPPPRFSLEQLIQAGHQLKAEQHQVEARRLSEEYL 290
>gi|334117637|ref|ZP_08491728.1| ribulose bisphosphate carboxylase small chain [Microcoleus
vaginatus FGP-2]
gi|333460746|gb|EGK89354.1| ribulose bisphosphate carboxylase small chain [Microcoleus
vaginatus FGP-2]
Length = 425
Score = 252 bits (644), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 129/261 (49%), Positives = 181/261 (69%), Gaps = 5/261 (1%)
Query: 56 LCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQ 115
L I G KG+GK+FQTEL+F+ MG EPV++S GELES AG+P +LIR RYR A++ ++ +
Sbjct: 33 LGIHGRKGEGKTFQTELVFRRMGFEPVMISGGELESPDAGDPARLIRLRYREAAEQIRVR 92
Query: 116 GKMSCLMINDIDAGLGRF-GNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRI 174
G+M + IND+DAG GRF TQ TVN Q+V TLMN++DNPT V + + +S +R+
Sbjct: 93 GEMCAIFINDLDAGAGRFDSTTQYTVNTQMVNATLMNIADNPTNVQLPGSY-DSTPLDRV 151
Query: 175 PIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITKDEVGSIVKTFP 234
PII TGNDFST+YAPLIRDGRMEKFYW+P+ +D + IV ++E D ++K E+ +V FP
Sbjct: 152 PIIVTGNDFSTLYAPLIRDGRMEKFYWEPSRDDKIGIVGGIFESDKLSKTEIVGLVDNFP 211
Query: 235 NQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVFTPPEKTVEALLE 294
+QA+DF+ ALRSR YD I ++I I G+E + +L+ + P F P ++ LLE
Sbjct: 212 DQAIDFFSALRSRIYDEQIREFIHKI-GIERVSKRLVNTL--EAAPDFQNPNFSLAHLLE 268
Query: 295 SGYSLLREQQLIMETKLSKEY 315
G ++ +Q+ I E +L EY
Sbjct: 269 MGSLMVGQQKRIQEMRLVDEY 289
>gi|254422770|ref|ZP_05036488.1| ribulose bisphosphate carboxylase, small subunit, putative
[Synechococcus sp. PCC 7335]
gi|196190259|gb|EDX85223.1| ribulose bisphosphate carboxylase, small subunit, putative
[Synechococcus sp. PCC 7335]
Length = 455
Score = 252 bits (644), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 132/291 (45%), Positives = 189/291 (64%), Gaps = 26/291 (8%)
Query: 46 YYIAPVFMASLC--------------------IWGGKGQGKSFQTELIFQAMGIEPVIMS 85
YYIAP F+ L I G KG+GK+FQ EL+F+ MG+E V +S
Sbjct: 3 YYIAPRFLNKLAVHITKNYLDLPQVKVPLILGIHGRKGEGKTFQCELVFERMGVEVVHIS 62
Query: 86 AGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGN-TQMTVNNQI 144
GELES AG+P +LIR RYR A+++V+ +G+M+ LMIND+DAG GRF TQ TVN Q+
Sbjct: 63 GGELESPDAGDPARLIRLRYREAAELVRVRGRMAVLMINDLDAGAGRFDRMTQYTVNTQL 122
Query: 145 VVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPN 204
V TLMN++DNPT V + + E + RIPII TGNDF+T+YAPLIRDGRM+KFYWQP+
Sbjct: 123 VNNTLMNIADNPTNVQLPGSYDEKALP-RIPIIATGNDFATLYAPLIRDGRMQKFYWQPS 181
Query: 205 LEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVE 264
ED + IV M+ DG++ +++ +VK F +QA+DF+GA+RS+ YD I+++I+ + G+E
Sbjct: 182 EEDRVGIVGGMFAGDGLSAEDIEQLVKQFKDQAVDFFGAVRSQLYDEQITRFIEQV-GIE 240
Query: 265 NLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEY 315
+ ++ + P F P T++ L+ +G +L+ EQ + L EY
Sbjct: 241 KVATNVV---NTPQKPTFNRPHFTLDHLVAAGNTLVEEQDRVRTMGLVNEY 288
>gi|427707439|ref|YP_007049816.1| ribulose 1,5-bisphosphate carboxylase small subunit [Nostoc sp. PCC
7107]
gi|427359944|gb|AFY42666.1| ribulose 1,5-bisphosphate carboxylase small subunit [Nostoc sp. PCC
7107]
Length = 415
Score = 252 bits (643), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 133/293 (45%), Positives = 188/293 (64%), Gaps = 25/293 (8%)
Query: 46 YYIAPVFMASLC--------------------IWGGKGQGKSFQTELIFQAMGIEPVIMS 85
YYIAP F+ + I G KG+GK+FQ EL F+ MG+E ++S
Sbjct: 3 YYIAPRFLDKIAVHITKNFLNLPGVRVPLILGIHGRKGEGKTFQCELAFEKMGVEVTLIS 62
Query: 86 AGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGN-TQMTVNNQI 144
GELES AG+P +LIR RYR ++ V+ +G+M LMIND+DAG GRF TQ TVN Q+
Sbjct: 63 GGELESPDAGDPARLIRLRYRETAEQVKVRGRMCVLMINDLDAGAGRFDEGTQYTVNTQL 122
Query: 145 VVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPN 204
V TLMN++DNPT V + + +S+ R+PII TGNDFST+YAPLIRDGRMEKFYW+PN
Sbjct: 123 VNATLMNIADNPTDVQLPGSY-DSNPIRRVPIIVTGNDFSTLYAPLIRDGRMEKFYWEPN 181
Query: 205 LEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVE 264
++ + IV ++ +DG++ EV V TFPNQ++DF+ A+RSR YD I K+I +I G E
Sbjct: 182 RDEKVGIVGGIFVEDGLSSREVEQFVDTFPNQSIDFFSAVRSRIYDEQIRKFIHEI-GFE 240
Query: 265 NLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYMK 317
N+ +++ + P F P + L+ESG+ ++ EQ+ + ++L EY +
Sbjct: 241 NISLRVVNSVEGP--PTFKKPNFNLSHLIESGHFMVGEQKRVENSQLVDEYNR 291
>gi|428305071|ref|YP_007141896.1| ribulose 1,5-bisphosphate carboxylase small subunit [Crinalium
epipsammum PCC 9333]
gi|428246606|gb|AFZ12386.1| ribulose 1,5-bisphosphate carboxylase small subunit [Crinalium
epipsammum PCC 9333]
Length = 427
Score = 252 bits (643), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 132/291 (45%), Positives = 188/291 (64%), Gaps = 25/291 (8%)
Query: 46 YYIAPVFMASLC--------------------IWGGKGQGKSFQTELIFQAMGIEPVIMS 85
YYI+P F+ L I G KG+GK+FQ EL+FQ MGIE V MS
Sbjct: 3 YYISPRFLDKLAVHITKNFLDLPGVRVPLILGIHGRKGEGKTFQCELVFQRMGIEVVHMS 62
Query: 86 AGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGN-TQMTVNNQI 144
AGELES AG+P +L+R RYR A+++++ +GKM LMIND+DAG GRF TQ TVN Q+
Sbjct: 63 AGELESPDAGDPSRLVRLRYREAAELIKVRGKMCVLMINDLDAGAGRFDQGTQYTVNTQM 122
Query: 145 VVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPN 204
V TLMN++DNPT V + + +S +R+PI+ TGNDF+T+YAPLIRDGRMEKF+W+P
Sbjct: 123 VNATLMNIADNPTNVQLPGSY-DSTPLHRVPILVTGNDFTTLYAPLIRDGRMEKFHWEPT 181
Query: 205 LEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVE 264
++ + IV +Y +DG+++ E+ +V F QA+DF+GALRSR YD I ++I +G
Sbjct: 182 RDEKVGIVRGIYSEDGLSESEIAQLVDNFVTQAVDFFGALRSRIYDEQIRQFIHQVG--Y 239
Query: 265 NLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEY 315
N + + D P+F P+ ++ L+E G + +EQQ + ++L +EY
Sbjct: 240 NKVSSAVVNSVDGP-PIFQKPDFSLSRLIEFGNLMAQEQQRVQSSRLVEEY 289
>gi|428320865|ref|YP_007118747.1| ribulose 1,5-bisphosphate carboxylase small subunit [Oscillatoria
nigro-viridis PCC 7112]
gi|428244545|gb|AFZ10331.1| ribulose 1,5-bisphosphate carboxylase small subunit [Oscillatoria
nigro-viridis PCC 7112]
Length = 424
Score = 251 bits (642), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 127/261 (48%), Positives = 182/261 (69%), Gaps = 5/261 (1%)
Query: 56 LCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQ 115
L I G KG+GK+FQTEL+F+ MG EPV++S GELES AG+P +LIR RYR A++ ++ +
Sbjct: 33 LGIHGRKGEGKTFQTELVFRRMGFEPVMISGGELESPDAGDPARLIRLRYREAAEQIRVR 92
Query: 116 GKMSCLMINDIDAGLGRF-GNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRI 174
G+M + IND+DAG GRF TQ TVN Q+V TLMN++DNPT V + + +S +R+
Sbjct: 93 GEMCAIFINDLDAGAGRFDTTTQYTVNTQMVNATLMNIADNPTNVQLPGSY-DSTPLHRV 151
Query: 175 PIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITKDEVGSIVKTFP 234
PII TGNDFST+YAPLIRDGRMEKFYW+P+ +D + IV ++E D ++K E+ +V FP
Sbjct: 152 PIIVTGNDFSTLYAPLIRDGRMEKFYWEPSRDDKIGIVGGIFESDKLSKTEIVGLVDHFP 211
Query: 235 NQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVFTPPEKTVEALLE 294
+QA+DF+ ALRSR YD + ++I + G+E + +L+ + P F P+ ++ LLE
Sbjct: 212 DQAIDFFSALRSRIYDEQVREFIHKV-GIERVSKRLVNTL--EAAPDFKNPDFSLAHLLE 268
Query: 295 SGYSLLREQQLIMETKLSKEY 315
G ++ +Q+ I E +L EY
Sbjct: 269 MGSLMVGQQKRIQEMRLVDEY 289
>gi|16471|emb|CAA32429.1| unnamed protein product [Arabidopsis thaliana]
Length = 473
Score = 250 bits (639), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 136/292 (46%), Positives = 186/292 (63%), Gaps = 27/292 (9%)
Query: 46 YYIAPVFMASLCIW--------------------GGKGQGKSFQTELIFQAMGIEPVIMS 85
+YIAP FM L + GGKGQGKSFQ EL+ MGI P++MS
Sbjct: 131 FYIAPAFMDKLVVHITKNFLTLPNIKVPLILGSRGGKGQGKSFQCELVMAKMGINPIMMS 190
Query: 86 AGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRF-GNTQMTVNNQI 144
AGELES AGE KLIR+RYR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ+
Sbjct: 191 AGELESGNAGEVRKLIRQRYREAADLIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQM 249
Query: 145 VVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPN 204
V TLMN++DNPT V + + + + R+PII TGNDFST+Y PLI DGRMEKF P
Sbjct: 250 VNATLMNIADNPTNVQLPGMYNKEE-NARVPIICTGNDFSTLYGPLILDGRMEKFLTGPT 308
Query: 205 LEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVE 264
ED + V ++ D I +++ ++V FP Q++DF+GALR+R YD + K+++ + GVE
Sbjct: 309 REDRIG-VWGIFRTDKIKDEDIVTLVDQFPGQSIDFFGALRARVYDDEVRKFVESL-GVE 366
Query: 265 NLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYM 316
+G +L+ R+ PVF PE T E L+E G L+ EQ+ + +L++ Y+
Sbjct: 367 KIGKRLVNSREGP--PVFEQPEMTYEKLMEYGNMLVMEQENVKRVQLAETYL 416
>gi|17229025|ref|NP_485573.1| ribulose 1,5-bisphosphate carboxylase/oxygenase activase [Nostoc
sp. PCC 7120]
gi|20139326|sp|P58555.1|RCA_ANASP RecName: Full=Ribulose bisphosphate carboxylase/oxygenase activase;
Short=RA; Short=RuBisCO activase
gi|17135353|dbj|BAB77899.1| ribulose 1,5-bisphosphate carboxylase/oxygenase activase [Nostoc
sp. PCC 7120]
Length = 414
Score = 250 bits (638), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 134/291 (46%), Positives = 187/291 (64%), Gaps = 25/291 (8%)
Query: 46 YYIAPVFMASLC--------------------IWGGKGQGKSFQTELIFQAMGIEPVIMS 85
YYIAP F+ L I G KG+GK+FQ EL F+ MGIE ++S
Sbjct: 3 YYIAPRFLDKLAVHITKNFLNIPGVRVPLILGIHGRKGEGKTFQCELAFEKMGIEVTLIS 62
Query: 86 AGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGN-TQMTVNNQI 144
GELES AG+P +LIR RYR +++++ +GKM LMIND+DAG GRF TQ TVN Q+
Sbjct: 63 GGELESPDAGDPARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEGTQYTVNTQL 122
Query: 145 VVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPN 204
V TLMN++DNPT V + + +S+ R+PII TGNDFST+YAPLIRDGRMEKFYW+PN
Sbjct: 123 VNATLMNIADNPTDVQLPGSY-DSNPIRRVPIIVTGNDFSTLYAPLIRDGRMEKFYWEPN 181
Query: 205 LEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVE 264
+D + IV ++ +DG+++ E+ +V TFP Q++DF+ ALRSR YD I +I + G E
Sbjct: 182 RDDKVGIVGGIFAEDGLSQREIEQLVDTFPKQSIDFFSALRSRIYDIQIRDFIHKV-GFE 240
Query: 265 NLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEY 315
+ +++ + P F P+ ++ L+ESG +L EQQ + ++L EY
Sbjct: 241 RISLRVVNSLEAP--PEFKKPDFSLAHLIESGNLVLGEQQRVDNSQLVDEY 289
>gi|119486453|ref|ZP_01620511.1| AAA ATPase, central region [Lyngbya sp. PCC 8106]
gi|119456355|gb|EAW37486.1| AAA ATPase, central region [Lyngbya sp. PCC 8106]
Length = 445
Score = 250 bits (638), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 133/294 (45%), Positives = 187/294 (63%), Gaps = 26/294 (8%)
Query: 46 YYIAPVFMASLC--------------------IWGGKGQGKSFQTELIFQAMGIEPVIMS 85
YYI+P F+ L I G KG+GK+FQ EL+F+ MG EPV +S
Sbjct: 3 YYISPRFLDKLAVHITKNFLKISNLRVPLILGIHGRKGEGKTFQCELVFEKMGFEPVTIS 62
Query: 86 AGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGN-TQMTVNNQI 144
GELES AG+P +LIR RYR AS+ + +G+M L INDIDAG GRF + TQ TVN Q+
Sbjct: 63 GGELESPDAGDPSRLIRLRYREASEQTKVRGQMCALFINDIDAGAGRFDSGTQYTVNTQL 122
Query: 145 VVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPN 204
V TLMN++DNPT V + + E+ + RIPII TGNDFST+YAPLIRDGRMEKFYW+PN
Sbjct: 123 VNATLMNIADNPTNVQLPGSYDETPL-QRIPIIVTGNDFSTLYAPLIRDGRMEKFYWEPN 181
Query: 205 LEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVE 264
++ + IV +++++ + K ++ +V FP Q++DF+ ALRSR YD I +I + G+E
Sbjct: 182 SKERVEIVEGIFQQE-LLKQDIIKLVDEFPEQSVDFFSALRSRIYDEQIQSFIHQM-GIE 239
Query: 265 NLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYMKN 318
+ +++ ++ P F P LLE G+ ++ EQ+ I E +L +EY +N
Sbjct: 240 KISKRIVN--STEKPPEFNKPNFKFSHLLEMGHQMVAEQRRIQELRLVEEYNQN 291
>gi|312064704|gb|ADQ27442.1| chloroplast Rubisco activase [Solanum tuberosum]
Length = 359
Score = 250 bits (638), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 127/270 (47%), Positives = 172/270 (63%), Gaps = 28/270 (10%)
Query: 10 GVIDPLFAGNFLGKDSDIVFDYRQKVTRSFEYLQGD-----YYIAPVFMASLCI------ 58
G++D LF + + + V+++ + Q D +YIAP FM L +
Sbjct: 92 GMVDSLFQAPTGTGTHHAIMNSYEYVSQALKTYQMDNKLDGFYIAPSFMDKLAVHITKNF 151
Query: 59 --------------WGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRER 104
WGGKGQGKSFQ EL+F+ MGI P++MSAGELES AGEP KLIR+R
Sbjct: 152 LSLPNIKVPLILGVWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQR 211
Query: 105 YRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIGQ 163
YR A+++++ +G M CL IND+DAG GR G TQ TVNNQ+V TLMN++DNPT V +
Sbjct: 212 YREAAEIIR-KGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPG 270
Query: 164 DWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITK 223
+ + + R+PII TGNDFST+YAPLIRDGRMEKFYW P ED + + ++ D + +
Sbjct: 271 MYNKQE-NCRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDNVPE 329
Query: 224 DEVGSIVKTFPNQALDFYGALRSRTYDRSI 253
+ V IV +FP Q++DF+GALR+R YD +
Sbjct: 330 EAVVKIVDSFPGQSIDFFGALRARVYDDEV 359
>gi|443478603|ref|ZP_21068337.1| AAA ATPase central domain protein [Pseudanabaena biceps PCC 7429]
gi|443016085|gb|ELS30823.1| AAA ATPase central domain protein [Pseudanabaena biceps PCC 7429]
Length = 297
Score = 249 bits (637), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 133/292 (45%), Positives = 185/292 (63%), Gaps = 25/292 (8%)
Query: 46 YYIAPVFMASLC--------------------IWGGKGQGKSFQTELIFQAMGIEPVIMS 85
YYI+P F+ L I GGKG+GKSFQ EL F+ +GIEP+ MS
Sbjct: 3 YYISPRFLDKLAVHLAKNFMKLPNVTVPLILGIHGGKGEGKSFQCELAFEKLGIEPIRMS 62
Query: 86 AGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRF-GNTQMTVNNQI 144
GELES AG+P +LIR RYR A+++V+ +GKM L+IND+DAG GR TQ TVN Q+
Sbjct: 63 GGELESPDAGDPARLIRMRYREAAELVKVRGKMCALLINDLDAGAGRVDSTTQYTVNTQL 122
Query: 145 VVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPN 204
V TLMN++DNPT V + + +S+ R+PII TGNDFST+YAPL+RDGRMEKF+W P+
Sbjct: 123 VNATLMNIADNPTNVQLPGSY-DSNPIRRVPIIVTGNDFSTLYAPLVRDGRMEKFFWMPD 181
Query: 205 LEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVE 264
D + IV ++ D I + E+ +V +P++++DF+G+LRS YD + K++ DI G+E
Sbjct: 182 RTDRIGIVSGIFAPDNIPQWEIERLVDMYPDRSIDFFGSLRSSLYDEQVRKFVYDI-GLE 240
Query: 265 NLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYM 316
L +L+ + LP F PP + L E+G LL E + + L +EYM
Sbjct: 241 RLSLRLVN--STEALPEFRPPSFDLRTLKEAGDRLLAEGDRVSQRNLIQEYM 290
>gi|119508823|ref|ZP_01627975.1| ribulose 1,5-bisphosphate carboxylase/oxygenase activase [Nodularia
spumigena CCY9414]
gi|119466352|gb|EAW47237.1| ribulose 1,5-bisphosphate carboxylase/oxygenase activase [Nodularia
spumigena CCY9414]
Length = 416
Score = 249 bits (635), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 130/293 (44%), Positives = 192/293 (65%), Gaps = 25/293 (8%)
Query: 46 YYIAPVFMASLC--------------------IWGGKGQGKSFQTELIFQAMGIEPVIMS 85
YYIAP F+ L I G KG+GK+FQ +L+F+ MGIE +S
Sbjct: 3 YYIAPRFLDKLGVHITKNFLNLPGVRVPLILGIHGRKGEGKTFQCQLVFEKMGIEVTNIS 62
Query: 86 AGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGN-TQMTVNNQI 144
GELES AG+P +LIR RYR +++++ +GKM LMIND+DAG GRF TQ TVN Q+
Sbjct: 63 GGELESPDAGDPARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEGTQYTVNTQM 122
Query: 145 VVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPN 204
V TLMN++DNPT V + + +S +R+PII TGNDFST+YAPLIRDGRMEKFYW+P+
Sbjct: 123 VNATLMNIADNPTDVQLPGSY-DSTPLHRVPIIVTGNDFSTLYAPLIRDGRMEKFYWEPD 181
Query: 205 LEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVE 264
+D + IV ++ +DG+++ EV +V TFP+Q++DFY ALRSR YD+ + ++I + G E
Sbjct: 182 RDDKVGIVGGIFAEDGLSQREVAQLVDTFPHQSIDFYSALRSRIYDQQVREFIHQV-GFE 240
Query: 265 NLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYMK 317
+ ++++ ++ P F P+ ++ L+ +G ++ EQQ + ++L EY +
Sbjct: 241 RVSSRIVN--SAEKPPEFKKPDFSLSNLISAGNFMVGEQQRVETSQLVDEYNR 291
>gi|10720250|sp|Q06721.1|RCA_ANASC RecName: Full=Ribulose bisphosphate carboxylase/oxygenase activase;
Short=RA; Short=RuBisCO activase
gi|485516|pir||S33627 ribulose-bisphosphate carboxylase activase (EC 6.3.4.-) - Anabaena
sp. (strain CA)
gi|296414|emb|CAA48129.1| ribulose 1,5-bisphosphate carboxylase/oxygenase activase [Anabaena
sp. CA]
Length = 415
Score = 249 bits (635), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 131/293 (44%), Positives = 188/293 (64%), Gaps = 25/293 (8%)
Query: 46 YYIAPVFMASLC--------------------IWGGKGQGKSFQTELIFQAMGIEPVIMS 85
YYIAP F+ L I G KG+GK+FQ EL F+ MG+E ++S
Sbjct: 3 YYIAPRFLDKLAVHITKNFLNLPGVRVPLILGIHGRKGEGKTFQCELAFEKMGVEVTLIS 62
Query: 86 AGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGN-TQMTVNNQI 144
GELES AG+P +LIR RYR +++++ +GKM LMIND+DAG GRF TQ TVN Q+
Sbjct: 63 GGELESPDAGDPARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEGTQYTVNTQL 122
Query: 145 VVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPN 204
V TLMN++DNPT V + + +S R+PII TGNDFST+YAPLIRDGRMEKFYW+P+
Sbjct: 123 VNATLMNIADNPTDVQLPGSY-DSTPLRRVPIIVTGNDFSTLYAPLIRDGRMEKFYWEPH 181
Query: 205 LEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVE 264
++ + IV ++ +DG+++ +V +V +FPNQ++DF+ ALRSR YD I +I + G E
Sbjct: 182 RDEKVGIVGGIFAEDGLSQRDVEKLVDSFPNQSIDFFSALRSRIYDEQIRDFIHQV-GYE 240
Query: 265 NLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYMK 317
N+ +++ + P F P+ T+ L+ES ++ EQ+ I ++L EY +
Sbjct: 241 NVSLRVVNSLEGP--PAFKKPDFTLSHLIESANFMVAEQKRIETSQLVDEYNR 291
>gi|427715651|ref|YP_007063645.1| ribulose 1,5-bisphosphate carboxylase small subunit [Calothrix sp.
PCC 7507]
gi|427348087|gb|AFY30811.1| ribulose 1,5-bisphosphate carboxylase small subunit [Calothrix sp.
PCC 7507]
Length = 417
Score = 248 bits (634), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 131/291 (45%), Positives = 186/291 (63%), Gaps = 25/291 (8%)
Query: 46 YYIAPVFMASLC--------------------IWGGKGQGKSFQTELIFQAMGIEPVIMS 85
YYIAP F+ L I G KG+GK+FQ EL+F+ MGIE ++S
Sbjct: 3 YYIAPRFLDKLAVHITKNFLKLPGVRVPLILGIHGRKGEGKTFQCELVFEKMGIEVTLIS 62
Query: 86 AGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGN-TQMTVNNQI 144
GELES AG+P +LIR RYR +++++ +GKM LMIND+DAG GRF TQ TVN Q+
Sbjct: 63 GGELESPDAGDPARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEGTQYTVNTQL 122
Query: 145 VVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPN 204
V TLMN++DNPT V + + +S +R+PII TGNDF+T+YAPLIRDGRMEKFYW+P+
Sbjct: 123 VNATLMNIADNPTDVQLPGSY-DSTPLHRVPIIVTGNDFTTLYAPLIRDGRMEKFYWEPD 181
Query: 205 LEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVE 264
+D + IV ++E DG+++ EV +V TFP+Q++DFY A+RSR YD I +I + G E
Sbjct: 182 RDDKVGIVGGIFEPDGLSRKEVEQLVDTFPHQSIDFYSAVRSRIYDEQIRNYIHKV-GFE 240
Query: 265 NLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEY 315
+ ++ + P F P + L+E+G ++ EQ+ + ++L EY
Sbjct: 241 QVSLSVVNSVEGP--PEFKKPNFGLSHLIEAGNLMVGEQKRVENSQLVDEY 289
>gi|440681100|ref|YP_007155895.1| ribulose 1,5-bisphosphate carboxylase small subunit [Anabaena
cylindrica PCC 7122]
gi|428678219|gb|AFZ56985.1| ribulose 1,5-bisphosphate carboxylase small subunit [Anabaena
cylindrica PCC 7122]
Length = 414
Score = 248 bits (633), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 132/291 (45%), Positives = 183/291 (62%), Gaps = 25/291 (8%)
Query: 46 YYIAPVFMASLC--------------------IWGGKGQGKSFQTELIFQAMGIEPVIMS 85
YYIAP F+ L I G KG+GK+FQ EL F+ MGIE ++S
Sbjct: 3 YYIAPSFLDKLAVHITKNFLHLPGVRVPLILGIHGRKGEGKTFQCELAFEKMGIEVTLIS 62
Query: 86 AGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGN-TQMTVNNQI 144
GELES AG+P +LIR RYR +++++ +GKM LMIND+DAG GRF TQ TVN Q+
Sbjct: 63 GGELESPDAGDPARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEGTQYTVNTQL 122
Query: 145 VVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPN 204
V TLMN++DNPT V + + +S +R+PII TGNDFST+YAPLIRDGRMEKFYW+PN
Sbjct: 123 VNATLMNIADNPTDVQLPGSY-DSTPLHRVPIIVTGNDFSTLYAPLIRDGRMEKFYWEPN 181
Query: 205 LEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVE 264
+D + IV ++ DG ++ E+ +V TF NQA+DF+ +LRSR YD+ I +I + G E
Sbjct: 182 RDDKVGIVGGIFAPDGFSQREIEELVDTFANQAIDFFSSLRSRIYDQQIRNFIHQV-GFE 240
Query: 265 NLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEY 315
+ +++ + P F P + L+ESG ++ EQ+ + + L EY
Sbjct: 241 QISKRVVNSLEGP--PEFKKPNFNLSHLIESGKLMVGEQKRVETSHLVDEY 289
>gi|428220631|ref|YP_007104801.1| ribulose bisphosphate carboxylase small subunit [Synechococcus sp.
PCC 7502]
gi|427993971|gb|AFY72666.1| ribulose bisphosphate carboxylase small subunit [Synechococcus sp.
PCC 7502]
Length = 418
Score = 248 bits (632), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 131/292 (44%), Positives = 188/292 (64%), Gaps = 24/292 (8%)
Query: 45 DYYIAPVFMASLC--------------------IWGGKGQGKSFQTELIFQAMGIEPVIM 84
+YYI+P F+ L I G KG+GKSFQ EL+F+ MGIEPV M
Sbjct: 2 NYYISPRFLDKLAVHITKNFLNLPGLTVPLILGIHGRKGEGKSFQCELVFKLMGIEPVRM 61
Query: 85 SAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRF-GNTQMTVNNQ 143
SAGELES AG+P +LIR RYR A+ +++ +GKM L+INDIDAG GR +TQ TVN Q
Sbjct: 62 SAGELESPDAGDPVRLIRTRYREAADLIKVRGKMCVLLINDIDAGAGRVDSSTQYTVNTQ 121
Query: 144 IVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQP 203
+V GTLMN++DNPT V + + E++ +R+PI+ TGNDFST+YAPL+RDGRMEKFYW+P
Sbjct: 122 LVNGTLMNIADNPTDVQLPGSY-ETEPISRVPILLTGNDFSTLYAPLLRDGRMEKFYWEP 180
Query: 204 NLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGV 263
ED + IV +++ DG+T+ V ++ FP+Q++DF+GALRS+ YD+ + +I +I G+
Sbjct: 181 TKEDRIGIVTGIFKADGLTEQNVEELISNFPHQSIDFFGALRSQVYDQQVRDFIREI-GI 239
Query: 264 ENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEY 315
+ ++ D + P + L++ G ++ EQQ + L +EY
Sbjct: 240 NKVSTHIVN-NPDLTVKFQQSPNFGLPYLIKLGNMMVHEQQRVQSRGLVEEY 290
>gi|427736905|ref|YP_007056449.1| ribulose bisphosphate carboxylase small subunit [Rivularia sp. PCC
7116]
gi|427371946|gb|AFY55902.1| ribulose bisphosphate carboxylase small subunit [Rivularia sp. PCC
7116]
Length = 787
Score = 247 bits (631), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 126/263 (47%), Positives = 179/263 (68%), Gaps = 6/263 (2%)
Query: 56 LCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQ 115
L I G KG+GKSFQ EL+F+ MG+E +S GELES AG+P +LIR RYR +++++ +
Sbjct: 33 LGIHGRKGEGKSFQCELVFEKMGVEVTHISGGELESPDAGDPARLIRLRYRETAELIKVR 92
Query: 116 GKMSCLMINDIDAGLGRFGN-TQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRI 174
GKM LMIND+DAG GRF TQ TVN Q+V TLMN++DNPT V + + +S +R+
Sbjct: 93 GKMCVLMINDLDAGAGRFDEGTQYTVNTQLVNATLMNIADNPTDVQLPGSY-DSTPLHRV 151
Query: 175 PIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITKDEVGSIVKTFP 234
PII TGNDFST+YAPLIRDGRMEKFYW+P ED + I+ ++ +DG++K +V +V F
Sbjct: 152 PIIVTGNDFSTLYAPLIRDGRMEKFYWEPTREDKVGIIGGIFSEDGLSKQDVEQLVDHFG 211
Query: 235 NQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVFTPPEKTVEALLE 294
NQA+DFY ALRSR YD I ++I + GV+ + ++++ +P F P+ + L+E
Sbjct: 212 NQAVDFYSALRSRIYDEQIRRFIQN-KGVDRVSSQVV---NSNNIPSFQKPKFGLSDLME 267
Query: 295 SGYSLLREQQLIMETKLSKEYMK 317
++ EQQ + + L +EY +
Sbjct: 268 VASLMVEEQQRVDNSHLVEEYNR 290
>gi|149941204|emb|CAO02534.1| putative rubisco activase [Vigna unguiculata]
Length = 229
Score = 246 bits (629), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 123/230 (53%), Positives = 157/230 (68%), Gaps = 23/230 (10%)
Query: 42 LQGDYYIAPVFMASLC--------------------IWGGKGQGKSFQTELIFQAMGIEP 81
++ YYIAP FM L IWGGKGQGKSFQ EL+F MGI P
Sbjct: 1 MKDGYYIAPAFMDKLVVHITKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINP 60
Query: 82 VIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTV 140
++MSAGELES AGEP KLIR+RYR A+ +++ +GKM L IND+DAG GR G TQ TV
Sbjct: 61 IVMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCALFINDLDAGAGRLGGTTQYTV 119
Query: 141 NNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFY 200
NNQ+V TLMN++DNPT V + + + + R+PII TGNDFST+YAPLIRDGRMEKFY
Sbjct: 120 NNQMVNATLMNIADNPTNVQLPGMYNKEE-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFY 178
Query: 201 WQPNLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYD 250
W P +D + + ++ DG+ ++EV +V TFP Q++DF+GALR+R YD
Sbjct: 179 WAPTRDDRVGVCKGIFRTDGVPEEEVYQLVDTFPGQSIDFFGALRARVYD 228
>gi|354567922|ref|ZP_08987089.1| ribulose bisphosphate carboxylase small chain [Fischerella sp.
JSC-11]
gi|353541596|gb|EHC11063.1| ribulose bisphosphate carboxylase small chain [Fischerella sp.
JSC-11]
Length = 415
Score = 246 bits (629), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 130/295 (44%), Positives = 189/295 (64%), Gaps = 25/295 (8%)
Query: 46 YYIAPVFMAS--------------------LCIWGGKGQGKSFQTELIFQAMGIEPVIMS 85
YYI+P F+ L I G KG+GKSFQ EL+F+ MG+E +S
Sbjct: 3 YYISPRFLDKVAVHITKNFLDLPGLRVPLILGIHGRKGEGKSFQCELVFEKMGVEVTHIS 62
Query: 86 AGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGN-TQMTVNNQI 144
GELES AG+P +LIR RYR +++++ +GKM LMIND+DAG GRF TQ TVN Q+
Sbjct: 63 GGELESPDAGDPARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEGTQYTVNTQL 122
Query: 145 VVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPN 204
V TLMN++DNPT V + + + + +R+PII TGNDFST+YAPLIRDGRMEKFYW+P+
Sbjct: 123 VNATLMNIADNPTDVQLPGSYDPTPL-HRVPIIVTGNDFSTLYAPLIRDGRMEKFYWEPD 181
Query: 205 LEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVE 264
+D + IV ++ +DG+++ E+ +V TF NQ++DF+ ALRSR YD I +I ++ GVE
Sbjct: 182 RDDKIGIVGGIFSEDGLSQREIEQLVDTFLNQSIDFFSALRSRIYDEQIRDFIYEV-GVE 240
Query: 265 NLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYMKNI 319
+ +++ + P F P + L+E G ++ EQQ ++ ++L EY + +
Sbjct: 241 RVSRRVVNSLEGP--PQFRKPNFNLSHLIEMGNVMVTEQQRVLTSQLVTEYNRGL 293
>gi|186684323|ref|YP_001867519.1| ribulose bisphosphate carboxylase, small chain [Nostoc punctiforme
PCC 73102]
gi|186466775|gb|ACC82576.1| ribulose bisphosphate carboxylase, small chain [Nostoc punctiforme
PCC 73102]
Length = 425
Score = 246 bits (628), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 132/293 (45%), Positives = 185/293 (63%), Gaps = 25/293 (8%)
Query: 46 YYIAPVFMASLC--------------------IWGGKGQGKSFQTELIFQAMGIEPVIMS 85
YYIAP F+ L I G KG+GK+FQ +L+F+ MGIE +S
Sbjct: 3 YYIAPRFLDKLAVHITKNFLKLPGVRVPVILGIHGRKGEGKTFQCQLVFEKMGIEVTHVS 62
Query: 86 AGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGN-TQMTVNNQI 144
GELES AG+P +LIR RYR +++++ +GKM LMIND+DAG GRF TQ TVN Q+
Sbjct: 63 GGELESPDAGDPARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEGTQYTVNTQL 122
Query: 145 VVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPN 204
V TLMN++DNPT V + + +S +R+PII TGNDFST+YAPLIRDGRMEKFYW+P+
Sbjct: 123 VNATLMNIADNPTDVQLPGSY-DSTPLHRVPIIVTGNDFSTLYAPLIRDGRMEKFYWEPD 181
Query: 205 LEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVE 264
+D + IV ++E DG+++ EV +V TF NQ++DF+ ALRSR YD I +I + G E
Sbjct: 182 RDDKVGIVKGIFEPDGLSQKEVEQLVDTFVNQSIDFFSALRSRIYDEQIRNYIHQV-GFE 240
Query: 265 NLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYMK 317
+ ++ + P F P+ + L+ESG L+ EQ+ + + L +Y +
Sbjct: 241 RVSLSVVNSTEGP--PEFKKPDFRLSHLIESGNFLVGEQKRVENSHLVDDYNR 291
>gi|158334944|ref|YP_001516116.1| ribulose bisphosphate carboxylase activase [Acaryochloris marina
MBIC11017]
gi|158305185|gb|ABW26802.1| Ribulose bisphosphate carboxylase activase, putative [Acaryochloris
marina MBIC11017]
Length = 416
Score = 246 bits (628), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 127/262 (48%), Positives = 181/262 (69%), Gaps = 5/262 (1%)
Query: 56 LCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQ 115
L I G KG+GKSFQ EL+F+ MGIEPV MSAGELES AG+P +LIR RYR A+++++ +
Sbjct: 33 LGIHGRKGEGKSFQCELLFEQMGIEPVRMSAGELESPDAGDPVRLIRMRYREAAELIKVR 92
Query: 116 GKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRI 174
GKM L+IND+DAG GR TQ TVN Q+V GTLMN++DNPT V + + I R+
Sbjct: 93 GKMCVLLINDLDAGAGRMDQTTQYTVNTQLVNGTLMNIADNPTDVQLPGSYDTQPI-RRV 151
Query: 175 PIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITKDEVGSIVKTFP 234
PI+ TGNDFST+YAPL+RDGRM+KFYWQPN ED L IV ++E D ++ + +V F
Sbjct: 152 PILVTGNDFSTLYAPLVRDGRMDKFYWQPNHEDRLGIVQGIFEPDRLSSSVIEQLVNHFA 211
Query: 235 NQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVFTPPEKTVEALLE 294
+QA+DF+GALRSR YD + +I ++ G+ N+ L+ ++++ + PP T++ L+
Sbjct: 212 DQAIDFFGALRSRIYDEQVRDFIRNL-GIGNVSTYLVN-SPERQVQI-QPPALTLDYLIN 268
Query: 295 SGYSLLREQQLIMETKLSKEYM 316
G +++ EQ + L++ Y+
Sbjct: 269 LGEAMVGEQDRLHHAGLAQAYL 290
>gi|308803006|ref|XP_003078816.1| 26S proteasome regulatory complex, ATPase RPT4 (ISS) [Ostreococcus
tauri]
gi|116057269|emb|CAL51696.1| 26S proteasome regulatory complex, ATPase RPT4 (ISS) [Ostreococcus
tauri]
Length = 584
Score = 246 bits (627), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 138/340 (40%), Positives = 202/340 (59%), Gaps = 45/340 (13%)
Query: 8 RAGVIDPLFAGNFLGKDSDIVF-DYRQKVTRSFEYLQGDYYIAPVFMAS----------- 55
R+GV + LF G LG D+D+ ++R+ RSF ++G++Y+ FM
Sbjct: 46 RSGVEETLFKGVVLGVDADVASGEHREGGFRSFGNVEGEFYVPERFMERVATHVAKNLLA 105
Query: 56 -------------LCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIR 102
L IWG KG GK+F EL + MG+ P++ SAGELE AGEPG ++R
Sbjct: 106 DRDGLRSAKPAVMLGIWGHKGCGKTFNVELACKRMGLMPIVTSAGELEDGTAGEPGAMLR 165
Query: 103 ERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIG 162
RY TA++ ++ G++SCL+INDIDAG+GRF + TVNNQI GTLMN+ DNPT VS G
Sbjct: 166 RRYLTAARAMRETGRLSCLIINDIDAGIGRFRDDLGTVNNQITHGTLMNICDNPTLVSEG 225
Query: 163 QDWR-ESDITN-RIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDG 220
WR ++ +TN R+PII TGNDFS +YAPL RDGRM D+ + + DG
Sbjct: 226 NAWRHDAKMTNARVPIIVTGNDFSRLYAPLTRDGRM----------DLWICYTAITKDDG 275
Query: 221 ITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGV---ENLGNKLLKRRKDK 277
+++ + ++V TFP Q LDF+GA+R+R YD ++ +I D+G V E L + +RK
Sbjct: 276 LSEKDCETLVDTFPQQPLDFFGAIRARVYDDAVRDFILDVGLVGMNEALVGGVESKRK-- 333
Query: 278 ELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYMK 317
++E L+++G+ L EQ+ + +L++EYM+
Sbjct: 334 ---TLGKVNASLERLIQAGHELCEEQENVSNIQLAREYMR 370
>gi|428215450|ref|YP_007088594.1| ribulose bisphosphate carboxylase small subunit [Oscillatoria
acuminata PCC 6304]
gi|428003831|gb|AFY84674.1| ribulose bisphosphate carboxylase small subunit [Oscillatoria
acuminata PCC 6304]
Length = 435
Score = 245 bits (626), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 129/295 (43%), Positives = 182/295 (61%), Gaps = 26/295 (8%)
Query: 46 YYIAPVFMASLC--------------------IWGGKGQGKSFQTELIFQAMGIEPVIMS 85
YYIAP F+ L I G KG+GKSFQ EL+FQ M ++ + +S
Sbjct: 3 YYIAPRFLNKLAVHITKNFLDLPGINAPLILGIHGHKGEGKSFQCELVFQRMKVQAIHLS 62
Query: 86 AGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRF-GNTQMTVNNQI 144
AGELES AG+P +L+R RYR A+ ++ GK++ LMINDIDAG GR TQ TVN Q+
Sbjct: 63 AGELESPDAGDPSRLVRFRYREAADIITKHGKLAVLMINDIDAGAGRVDSGTQYTVNTQL 122
Query: 145 VVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPN 204
V TLMN++DNPT V + + +S+ R+PII TGNDF T+YAPL+RDGRM+KFYW+PN
Sbjct: 123 VNATLMNIADNPTNVQLPGSY-DSEPLPRVPIIVTGNDFGTLYAPLVRDGRMDKFYWEPN 181
Query: 205 LEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVE 264
ED L IV+ ++ DG+ + ++ +V F Q++DF+ ALR+ YD I +I+ G +
Sbjct: 182 REDRLEIVNGIFTPDGLNRQQIEQLVSKFEGQSIDFFSALRASIYDEQILAFIEQT-GFD 240
Query: 265 NLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYMKNI 319
+G LK E F P+ +E L+E G +++EQQ I E +L Y +++
Sbjct: 241 KIG---LKVANSTEKHSFIKPDFRLEHLIEKGEQMVKEQQHIQELRLVAAYNRSL 292
>gi|428210200|ref|YP_007094553.1| ribulose 1,5-bisphosphate carboxylase small subunit
[Chroococcidiopsis thermalis PCC 7203]
gi|428012121|gb|AFY90684.1| ribulose 1,5-bisphosphate carboxylase small subunit
[Chroococcidiopsis thermalis PCC 7203]
Length = 475
Score = 245 bits (625), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 132/297 (44%), Positives = 191/297 (64%), Gaps = 25/297 (8%)
Query: 45 DYYIAPVFMASLCIW--------------------GGKGQGKSFQTELIFQAMGIEPVIM 84
+YYIAP F+ + ++ G KG+GKSFQ +L+F+ MGIE +
Sbjct: 2 NYYIAPRFLEKIAVFITKNYLNIPGIRVPLILGVHGRKGEGKSFQCDLVFEKMGIEITHI 61
Query: 85 SAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGN-TQMTVNNQ 143
S GELES AG+P +L+R RYR +++++ +GKM +MIND+DAG GRF TQ TVN Q
Sbjct: 62 SGGELESPDAGDPSRLLRLRYRETAELIRVRGKMCAIMINDLDAGAGRFDEGTQYTVNTQ 121
Query: 144 IVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQP 203
+V TLMN++DNPT V + + E+ + +R+PII TGNDFST+YAPLIRDGRMEKFYWQP
Sbjct: 122 LVNATLMNIADNPTNVQLPGSYDETPL-HRVPIIVTGNDFSTLYAPLIRDGRMEKFYWQP 180
Query: 204 NLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGV 263
+ D + IV +Y DG++ E+ +V TF NQ++DF+ ALRSR YD I +I I G+
Sbjct: 181 DRSDKVGIVAGIYSDDGLSSREIEQLVDTFSNQSVDFFSALRSRIYDEQIRDFIFKI-GI 239
Query: 264 ENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYMKNID 320
E + +++ P F+ P+ + L+E G +++EQQ + ++L KEY + +D
Sbjct: 240 EQVSRRVVN--SADRPPEFSKPKFNLSRLIEMGNLMVKEQQQVQSSQLVKEYNRALD 294
>gi|209526170|ref|ZP_03274701.1| ribulose bisphosphate carboxylase small chain [Arthrospira maxima
CS-328]
gi|376005139|ref|ZP_09782687.1| Ribulose bisphosphate carboxylase/oxygenase activase [Arthrospira
sp. PCC 8005]
gi|423065450|ref|ZP_17054240.1| ribulose bisphosphate carboxylase/oxygenase activase [Arthrospira
platensis C1]
gi|209493426|gb|EDZ93750.1| ribulose bisphosphate carboxylase small chain [Arthrospira maxima
CS-328]
gi|375326497|emb|CCE18440.1| Ribulose bisphosphate carboxylase/oxygenase activase [Arthrospira
sp. PCC 8005]
gi|406713143|gb|EKD08317.1| ribulose bisphosphate carboxylase/oxygenase activase [Arthrospira
platensis C1]
Length = 434
Score = 245 bits (625), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 131/292 (44%), Positives = 190/292 (65%), Gaps = 27/292 (9%)
Query: 46 YYIAPVFMAS--------------------LCIWGGKGQGKSFQTELIFQAMGIEPVIMS 85
YYI+P F+ L I G KG+GK+FQ EL+F+ MGIEPV++S
Sbjct: 3 YYISPRFLDKVSVHITKNFLDIPRIKVPLILGIHGRKGEGKTFQCELVFKTMGIEPVMIS 62
Query: 86 AGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGN-TQMTVNNQI 144
GELES AG+P +L+R RYR A++ V+ +G+M + IND DAG GRF + TQ TVN Q+
Sbjct: 63 GGELESPDAGDPSRLLRLRYREAAEQVRVKGQMCAIFINDFDAGAGRFDSGTQYTVNTQL 122
Query: 145 VVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPN 204
V TLMN++DNPT V + + E+ + +RIPII TGNDFST+YAPLIRDGRM+KFYW+P+
Sbjct: 123 VNATLMNIADNPTNVQLPGSYDETPL-HRIPIIITGNDFSTLYAPLIRDGRMDKFYWEPS 181
Query: 205 LEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVE 264
ED + IV ++ D ++ ++ +V F QA+DF+ A+RSR YD I ++I G++
Sbjct: 182 REDRIAIVRGIFADDSLSDSQIIKLVDDFTGQAIDFFSAMRSRIYDEQIREFIYH-QGLD 240
Query: 265 NLGNKLLKR-RKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEY 315
+ +L+ K ELP P+ +++ L+ESG +++ EQQ I + +L +EY
Sbjct: 241 KISRRLVNSVDKPPELPQ---PDFSLQHLIESGRAMVEEQQQIQKLRLVEEY 289
>gi|298491099|ref|YP_003721276.1| ribulose bisphosphate carboxylase small chain ['Nostoc azollae'
0708]
gi|298233017|gb|ADI64153.1| ribulose bisphosphate carboxylase small chain ['Nostoc azollae'
0708]
Length = 408
Score = 244 bits (622), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 128/291 (43%), Positives = 184/291 (63%), Gaps = 25/291 (8%)
Query: 46 YYIAPVFMASLC--------------------IWGGKGQGKSFQTELIFQAMGIEPVIMS 85
YYIAP F+ L I G KG+GKSFQ EL+F MGIE ++S
Sbjct: 3 YYIAPSFLDKLAVHITKNFLNLPGIRVPLILGIHGRKGEGKSFQCELVFDKMGIETTLIS 62
Query: 86 AGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGN-TQMTVNNQI 144
GELES AG+P +LIR RYR +++++ +GKM LMIND+DAG GRF TQ TVN Q+
Sbjct: 63 GGELESSDAGDPARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEGTQYTVNTQL 122
Query: 145 VVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPN 204
V TLMN++D+PT V + + +S+ T R+PII TGNDFST+YAPL RDGRMEKFYW+PN
Sbjct: 123 VNATLMNIADSPTDVQLPGSY-DSNPTRRVPIIVTGNDFSTLYAPLTRDGRMEKFYWEPN 181
Query: 205 LEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVE 264
+D + +V ++ +D + + E+ +V F Q++DF+ LRSR YD I ++I I G E
Sbjct: 182 RDDKVGMVGGIFAEDALLQREIEQLVDNFAYQSIDFFSTLRSRIYDEQIREFIHTI-GFE 240
Query: 265 NLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEY 315
N+ ++++ + P F P ++ L++SG ++ EQ+ + ++L EY
Sbjct: 241 NVSSRVVNSAEGP--PAFKRPNFSLSHLIDSGKFMVAEQKRVETSQLVDEY 289
>gi|434404079|ref|YP_007146964.1| ribulose bisphosphate carboxylase small subunit [Cylindrospermum
stagnale PCC 7417]
gi|428258334|gb|AFZ24284.1| ribulose bisphosphate carboxylase small subunit [Cylindrospermum
stagnale PCC 7417]
Length = 415
Score = 243 bits (621), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 130/293 (44%), Positives = 189/293 (64%), Gaps = 25/293 (8%)
Query: 46 YYIAPVFMASLC--------------------IWGGKGQGKSFQTELIFQAMGIEPVIMS 85
YYIAP F+ L I G KG+GK+FQ EL+F+ MGIE +S
Sbjct: 3 YYIAPRFLDKLGVHITKNFLQLPGVRVPLILGIHGRKGEGKTFQCELVFEKMGIEVTQIS 62
Query: 86 AGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGN-TQMTVNNQI 144
GELES AG+P +LIR RYR +++++ +GKM LMIND+DAG GRF TQ TVN Q+
Sbjct: 63 GGELESPDAGDPARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEGTQYTVNTQL 122
Query: 145 VVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPN 204
V TLMN++DNPT V + + +S +R+PII TGNDFST+YAPLIRDGRMEKFYW+P+
Sbjct: 123 VNATLMNIADNPTDVQLPGSY-DSTPLHRVPIIVTGNDFSTLYAPLIRDGRMEKFYWEPS 181
Query: 205 LEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVE 264
+D + IV ++ +DG+++ +V +V TF NQ++DF+ ALRSR YD I ++I + G E
Sbjct: 182 RDDKVGIVGGIFAEDGLSQRQVEQLVDTFINQSVDFFSALRSRIYDEQIREFIHQV-GFE 240
Query: 265 NLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYMK 317
+ +++ ++ P F P+ ++ L+E+G ++ EQQ + + L +Y +
Sbjct: 241 RVSLRVVN--SAEKPPEFKKPDFSLSHLIEAGNLIVGEQQRVETSHLVDDYNR 291
>gi|359457374|ref|ZP_09245937.1| ribulose bisphosphate carboxylase small chain [Acaryochloris sp.
CCMEE 5410]
Length = 416
Score = 242 bits (617), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 125/262 (47%), Positives = 180/262 (68%), Gaps = 5/262 (1%)
Query: 56 LCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQ 115
L I G KG+GKSFQ EL+F+ MGIEPV MSAGELES AG+P +LIR RYR A+++++ +
Sbjct: 33 LGIHGRKGEGKSFQCELLFEQMGIEPVRMSAGELESPDAGDPVRLIRMRYREAAELIKVR 92
Query: 116 GKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRI 174
GKM L+IND+DAG R TQ TVN Q+V GTLMN++DNPT V + + I R+
Sbjct: 93 GKMCVLLINDLDAGASRMDQTTQYTVNTQLVNGTLMNIADNPTDVQLPGSYDTQPI-RRV 151
Query: 175 PIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITKDEVGSIVKTFP 234
PI+ TGNDFST+YAPL+RDGRM+KFYWQP+ ED L IV ++E D ++ + +V F
Sbjct: 152 PILVTGNDFSTLYAPLVRDGRMDKFYWQPSDEDRLGIVQGIFEPDRLSSSVIEQLVNHFA 211
Query: 235 NQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVFTPPEKTVEALLE 294
+QA+DF+GALRSR YD + +I ++ G+ N+ L+ ++++ + PP ++ L+E
Sbjct: 212 DQAIDFFGALRSRIYDEQVRDFIRNL-GIGNVSTYLVN-SPERQVQI-QPPALALDYLIE 268
Query: 295 SGYSLLREQQLIMETKLSKEYM 316
G +++ EQ + L++ Y+
Sbjct: 269 LGEAMVGEQDRLHHAGLAQAYL 290
>gi|149941210|emb|CAO02537.1| putative rubisco activase [Vigna unguiculata]
Length = 236
Score = 241 bits (615), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 123/231 (53%), Positives = 158/231 (68%), Gaps = 25/231 (10%)
Query: 36 TRSFEYLQGDYYIAPVFMASLC--------------------IWGGKGQGKSFQTELIFQ 75
T +F+ ++ YYIAP FM L IWGGKGQGKSFQ EL+F
Sbjct: 9 TYNFDNMKDGYYIAPAFMDKLVVHITKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFA 68
Query: 76 AMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG- 134
MGI P++MSAGELES AGEP KLIR+RYR A+ +++ +GKM L IND+DAG GR G
Sbjct: 69 KMGINPIVMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCALFINDLDAGAGRLGG 127
Query: 135 NTQMTVNNQIVVGTLMNLSDNPTRVSI-GQDWRESDITNRIPIIFTGNDFSTIYAPLIRD 193
TQ TVNNQ+V TLMN++DNPT V + G +E ++ R+PII TGNDFST+YAPLIRD
Sbjct: 128 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENL--RVPIIVTGNDFSTLYAPLIRD 185
Query: 194 GRMEKFYWQPNLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGAL 244
GRMEKFYW P +D + + ++ DG+ ++EV +V TFP Q++DF+GAL
Sbjct: 186 GRMEKFYWAPTRDDRVGVCKGIFRTDGVPEEEVYKLVDTFPGQSIDFFGAL 236
>gi|255088359|ref|XP_002506102.1| ribulose bisphosphate carboxylase/oxygenase activase [Micromonas
sp. RCC299]
gi|226521373|gb|ACO67360.1| ribulose bisphosphate carboxylase/oxygenase activase [Micromonas
sp. RCC299]
Length = 395
Score = 241 bits (614), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 134/348 (38%), Positives = 197/348 (56%), Gaps = 40/348 (11%)
Query: 9 AGVIDPLFAGNFLGKDSDIVF-DYRQK-VTRSFEYL--QGDYYIAPVFMAS--------- 55
+GV + LF G+ LG D+D+ D R + + F + Y+I F+
Sbjct: 50 SGVREELFKGSILGVDADVATGDLRARGEIKQFGDIKDHASYHIPDRFLDRFATHIAKNL 109
Query: 56 --------------LCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLI 101
LC+WGGKG GKSF EL + +G+ PV++SAGELE AGEPG ++
Sbjct: 110 LIDGGANLGSVPLILCVWGGKGCGKSFNLELCCKRLGVFPVVVSAGELEDPTAGEPGAML 169
Query: 102 RERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSI 161
R RY TA + + G +C+++ND+DAG+GRF + + TVNNQI TLMNL D P RVS+
Sbjct: 170 RRRYLTAGKHMSASGAPTCVIVNDVDAGVGRFKDDKATVNNQIAQATLMNLCDEPNRVSV 229
Query: 162 GQDWRESDITN--RIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKD 219
G +WR D + R+PI+ T ND S +YAPL R+GR + + W+P +I +VH +
Sbjct: 230 GGEWRSDDRAHCPRVPIVVTANDPSVLYAPLTRNGRTDLWMWEPTRGEITKMVHDALDGA 289
Query: 220 ---GITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKD 276
G D + +V FP+Q LDF+GA+RSR D ++ ++I + G+ENLG L R
Sbjct: 290 PGYGGESDAL-ELVNAFPSQPLDFFGAVRSRCADDAVRRFIARV-GLENLGATLCGHRGR 347
Query: 277 K------ELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYMKN 318
+ T + ++ +LLE+G + REQQ +M+ LS+EY+ N
Sbjct: 348 EGGDPGWSASTLTGMDASLRSLLEAGAEIAREQQNVMDVALSREYVAN 395
>gi|303281566|ref|XP_003060075.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226458730|gb|EEH56027.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 390
Score = 240 bits (613), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 134/317 (42%), Positives = 190/317 (59%), Gaps = 41/317 (12%)
Query: 37 RSFEYLQGDYYIAPVF------------MAS--------LCIWGGKGQGKSFQTELIFQA 76
RS +QGDY++ F +AS L IWGGKG GKSF EL +
Sbjct: 7 RSLANVQGDYHVPERFRDKFATHLVKNALASSNLQTPLILGIWGGKGCGKSFNVELCCRD 66
Query: 77 MGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNT 136
MG+ P++ SAGELE AGEPG L+R RY AS +++ GK + D+DAG+GR +
Sbjct: 67 MGVTPIVTSAGELEDPVAGEPGALLRRRYLAASTAIRHTGKPA-----DLDAGIGRHRDD 121
Query: 137 QMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESD--ITNRIPIIFTGNDFSTIYAPLIRDG 194
+ TVNNQIV TLMNL D+PTRVS+G +WR D R+PI+ TGND S +YAPL R G
Sbjct: 122 KTTVNNQIVAATLMNLCDDPTRVSVGGEWRADDRARCERVPIVVTGNDLSRVYAPLTRSG 181
Query: 195 RMEKFYWQPNLEDILNIVHRMYEKD-------GITKDEVGSIVKTFPNQALDFYGALRSR 247
RM+ + W+P ++I +VH++ + D GI ++ V F Q LDF+GA RSR
Sbjct: 182 RMDLWMWEPTRDEIAEMVHQLLKDDKRPGGYGGI--EDARRFVDAFDAQPLDFFGAARSR 239
Query: 248 TYDRSISKWIDDIGGVENLGNKLLK---RRKDKELPVFTPPEKTVEALLESGYSLLREQQ 304
D + ++D + GVE+LG +LL + K K + V + ++EAL+ +G ++ REQQ
Sbjct: 240 CVDDDVRAFVDRV-GVESLGTRLLSSGDKIKSKSV-VVGRGDVSLEALVRAGRAIEREQQ 297
Query: 305 LIMETKLSKEYMKNIDD 321
+++ +LS+EY+ N DD
Sbjct: 298 NVLDVRLSREYLANWDD 314
>gi|434387097|ref|YP_007097708.1| ATP-dependent 26S proteasome regulatory subunit [Chamaesiphon
minutus PCC 6605]
gi|428018087|gb|AFY94181.1| ATP-dependent 26S proteasome regulatory subunit [Chamaesiphon
minutus PCC 6605]
Length = 302
Score = 240 bits (612), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 128/292 (43%), Positives = 186/292 (63%), Gaps = 24/292 (8%)
Query: 45 DYYIAPVFMASLCIW--------------------GGKGQGKSFQTELIFQAMGIEPVIM 84
DYYIAP F+ L + G KG+GK+FQ EL+F M +E + +
Sbjct: 2 DYYIAPAFLDKLAVHITKNFLDLPGVKVPLILGVHGRKGEGKTFQCELVFDRMKVEAIHI 61
Query: 85 SAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGN-TQMTVNNQ 143
SAGELES AG+ +LIR RYR A+++++ +G+M+ L+INDIDAG GRF TQ TVN Q
Sbjct: 62 SAGELESPDAGDSARLIRLRYREAAEIIKVRGRMAVLVINDIDAGAGRFDQGTQYTVNTQ 121
Query: 144 IVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQP 203
+V TLMN++D+PT V + + +S RIPII TGND ST+YAPLIRDGRMEK+YW P
Sbjct: 122 LVNATLMNIADHPTNVQLPGSY-DSTPLPRIPIIVTGNDLSTLYAPLIRDGRMEKYYWVP 180
Query: 204 NLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGV 263
ED + IV ++ D I++ E+ ++V FP++A+DF+ A+R+R YD I +I + G+
Sbjct: 181 TREDKIGIVRGIFAPDNISEREIVNLVDRFPDRAVDFFAAMRARIYDEQIRDFIHKV-GL 239
Query: 264 ENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEY 315
E L +++ + P F P T+ L+E G L++EQ+ + E++L +EY
Sbjct: 240 ERLSIEVVNPASGIK-PTFPKPYFTLARLIEFGNLLVQEQKSVDESRLVEEY 290
>gi|443316141|ref|ZP_21045597.1| ribulose bisphosphate carboxylase small subunit [Leptolyngbya sp.
PCC 6406]
gi|442784241|gb|ELR94125.1| ribulose bisphosphate carboxylase small subunit [Leptolyngbya sp.
PCC 6406]
Length = 461
Score = 240 bits (612), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 130/296 (43%), Positives = 183/296 (61%), Gaps = 28/296 (9%)
Query: 46 YYIAPVFMASLCIW--------------------GGKGQGKSFQTELIFQAMGIEPVIMS 85
YYI+P F+ L I G KG+GK+FQ EL+++ MG+E V +S
Sbjct: 3 YYISPRFLDKLAIHITKNYLSLPDVRVPVILGVHGRKGEGKTFQCELVYERMGVEVVAIS 62
Query: 86 AGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGN-TQMTVNNQI 144
GELES AG+P +LIR RYR A+++V+ +G M+ LMIND+DAG GRF TQ TVN Q+
Sbjct: 63 GGELESPDAGDPARLIRLRYREAAELVRVRGVMAVLMINDLDAGAGRFDALTQYTVNTQL 122
Query: 145 VVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPN 204
V TLMN++DNPT V + + + I R+PII TGNDFST+Y PL+RDGRMEKFYW P+
Sbjct: 123 VNNTLMNIADNPTNVQLPGSYDDQPI-RRVPIIATGNDFSTLYEPLVRDGRMEKFYWMPD 181
Query: 205 LEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVE 264
D + IV ++E D + + +V TF QA+DF+GALR+R YD + +I +G
Sbjct: 182 RSDRIGIVAGIFEPDQLGTAAIEQLVDTFSQQAVDFFGALRARIYDEQVRDFIQSVG--- 238
Query: 265 NLGNKLLKRRKDKEL-PVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYMKNI 319
+K+ +R + E P FT P T+ L+E G ++ EQQ + E +L +Y + +
Sbjct: 239 --LDKVSQRVVNSETSPTFTRPTFTLSHLIEVGQQMVIEQQWLQEMRLGDQYNRAL 292
>gi|254416331|ref|ZP_05030084.1| ribulose bisphosphate carboxylase, small subunit, putative
[Coleofasciculus chthonoplastes PCC 7420]
gi|196176769|gb|EDX71780.1| ribulose bisphosphate carboxylase, small subunit, putative
[Coleofasciculus chthonoplastes PCC 7420]
Length = 447
Score = 237 bits (604), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 130/295 (44%), Positives = 191/295 (64%), Gaps = 25/295 (8%)
Query: 46 YYIAPVFMASLC--------------------IWGGKGQGKSFQTELIFQAMGIEPVIMS 85
YYIAP F L I G KG+GKSFQ EL+F+ MGI + +S
Sbjct: 8 YYIAPSFRDKLAVHITKNYLELEGVRVPLILGIHGRKGEGKSFQCELVFEQMGIGIIHIS 67
Query: 86 AGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRF-GNTQMTVNNQI 144
GELES AG+P +LIR RYR A+++++ QGKM LMIND+DAG+GRF TQ TVN Q+
Sbjct: 68 GGELESPDAGDPARLIRLRYREAAEMIKVQGKMCGLMINDLDAGVGRFDSTTQYTVNTQL 127
Query: 145 VVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPN 204
V TLMN++D+PT V + + +++ +R+PII TGNDFST+YAPLIR+GRMEK+YW+P+
Sbjct: 128 VSATLMNIADHPTDVQLPGSY-DANPLHRVPIIVTGNDFSTLYAPLIREGRMEKYYWEPS 186
Query: 205 LEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVE 264
E+ + IV ++ DG+ + ++ +V FP+QA+DF+ ALRSR YD+ I +I D+ G++
Sbjct: 187 REERIGIVGGIFAADGLPRRDIEQLVDQFPDQAIDFFSALRSRIYDQQILHFIHDV-GLD 245
Query: 265 NLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYMKNI 319
+ +++ R + P F P + L+E G ++ EQ+ + +T L +EY K +
Sbjct: 246 QVSFRVV--RSTEAPPEFEKPNFDISHLIEFGQVMIGEQRQVEQTGLVREYNKAL 298
>gi|116791872|gb|ABK26141.1| unknown [Picea sitchensis]
Length = 363
Score = 226 bits (577), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 120/255 (47%), Positives = 159/255 (62%), Gaps = 28/255 (10%)
Query: 10 GVIDPLFAGNFLGKDSDIV---FDYRQKVTRSFEY--LQGDYYIAPVFMASLC------- 57
G +D LF ++V +DY R++++ YYIAP FM L
Sbjct: 93 GKVDSLFQAPMGSGTHNVVMSTYDYISTAQRTYDFDNTMDGYYIAPSFMDKLLVHISKNF 152
Query: 58 -------------IWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRER 104
IWGGKGQGKSFQ EL+F +GI P++MSAGELES AGEP KL+R+R
Sbjct: 153 MNLPNIKVPLILGIWGGKGQGKSFQCELVFAKLGINPIMMSAGELESGDAGEPAKLLRKR 212
Query: 105 YRTASQVVQNQGKMSCLMINDIDAGLGRFGN-TQMTVNNQIVVGTLMNLSDNPTRVSIGQ 163
YR AS +V+ +GKM L IND++AG GR G+ TQ TVNNQ+V TLMN++DNPT V +
Sbjct: 213 YREASDIVK-KGKMCVLFINDLEAGAGRMGSTTQYTVNNQMVNATLMNIADNPTNVQLPG 271
Query: 164 DWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITK 223
+ + D R+PI+ TGNDFST+YAPLIRDGRMEKFYW P +D + + ++ D +
Sbjct: 272 MYNKQD-NPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCQGIFRADNVHP 330
Query: 224 DEVGSIVKTFPNQAL 238
D+V +V TFP Q++
Sbjct: 331 DDVVRLVDTFPGQSI 345
>gi|302836245|ref|XP_002949683.1| hypothetical protein VOLCADRAFT_42653 [Volvox carteri f.
nagariensis]
gi|300265042|gb|EFJ49235.1| hypothetical protein VOLCADRAFT_42653 [Volvox carteri f.
nagariensis]
Length = 323
Score = 226 bits (577), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 139/331 (41%), Positives = 184/331 (55%), Gaps = 37/331 (11%)
Query: 18 GNFLGKDSDIV-FDYRQKVTRSFEYLQGDYYIAPVFMAS--------------------- 55
G LG SDI R R+F + GDYY+AP F+
Sbjct: 1 GEVLGHKSDIADGTLRAYDFRTFNNIVGDYYVAPAFLEKVALHMAKNYLYDLGAIASNVR 60
Query: 56 ----LCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQV 111
L IWG KG GK+FQTEL + +G E V+MS+GELE E AG PGKLIRERYR AS++
Sbjct: 61 VPLILGIWGEKGMGKTFQTELALKQLGAETVVMSSGELEHEWAGTPGKLIRERYRKASEM 120
Query: 112 VQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDIT 171
+ +GKM+ L+I+DIDAGLG F + Q+TVNNQIV+GTLMN+ DNP VS+GQDWR D
Sbjct: 121 SKVRGKMTALLIHDIDAGLGHFDHVQVTVNNQIVIGTLMNICDNPNVVSVGQDWRSEDRI 180
Query: 172 NRIPIIFTGNDFSTIYAP-LIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITKDEVGSIV 230
R PII TG + ++ L+R + QP+ + L+ + T V + V
Sbjct: 181 RRTPIIVTGRGPTRRFSRYLLRVTSVT----QPHSTNHLSNCYLPTNTPCCTY--VYTYV 234
Query: 231 KTFPNQALDFYGALRSRTYDRSISKWI--DDIGGVENLGNKLLKRRKDKELPVFTPPEKT 288
F Q LDF+GALR+ TYD I +WI D GG+ G + LP F P T
Sbjct: 235 CRFKRQPLDFFGALRASTYDEQIRQWIRRDITGGL--WGEVCVGGTDKSGLPRFEPVRLT 292
Query: 289 VEALLESGYSLLREQQLIMETKLSKEYMKNI 319
V+ L+ G L EQQ ++ KLS +Y++++
Sbjct: 293 VDMLVAEGERLENEQQQVLNHKLSADYLRHV 323
>gi|410927480|gb|AFV93499.1| chloroplast ribulose bisphosphate carboxylase/oxygenase activase
beta1, partial [Gossypium barbadense]
Length = 236
Score = 225 bits (573), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 113/214 (52%), Positives = 143/214 (66%), Gaps = 23/214 (10%)
Query: 46 YYIAPVFMASLC--------------------IWGGKGQGKSFQTELIFQAMGIEPVIMS 85
+YIAP FM L IWGGKGQGKSFQ EL+F MGI P++MS
Sbjct: 25 FYIAPAFMDKLVVHITKNYMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 84
Query: 86 AGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRF-GNTQMTVNNQI 144
AGELES AGEP KLIR+RYR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ+
Sbjct: 85 AGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQM 143
Query: 145 VVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPN 204
V TLMN++DNPT V + + + + R+PII TGNDFST+YAPLIRDGRMEKFYW P
Sbjct: 144 VNATLMNIADNPTNVQLPGMYNKEE-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT 202
Query: 205 LEDILNIVHRMYEKDGITKDEVGSIVKTFPNQAL 238
ED + + ++ D + D++ +V TFP Q++
Sbjct: 203 REDRIGVCTGIFRTDNVPVDDIVKLVDTFPGQSI 236
>gi|410927496|gb|AFV93500.1| chloroplast ribulose bisphosphate carboxylase/oxygenase activase
beta2, partial [Gossypium barbadense]
Length = 250
Score = 224 bits (572), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 119/237 (50%), Positives = 151/237 (63%), Gaps = 35/237 (14%)
Query: 35 VTRSFEYL-QG-----------DYYIAPVFMASLCI--------------------WGGK 62
V S+EYL QG +YIAP FM L + WGGK
Sbjct: 16 VMSSYEYLSQGLRTYDLDNNMDGFYIAPAFMDKLVVHITKNFMTLPNIKVPLILGVWGGK 75
Query: 63 GQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLM 122
GQGKSFQ EL+F MGI P++MSAGELES AGEP KLIR+RYR A+ +++ +GKM CL
Sbjct: 76 GQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLF 134
Query: 123 INDIDAGLGRF-GNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGN 181
IND+DAG GR G TQ TVNNQ+V TLMN++DNPT V + + + + R+PII TGN
Sbjct: 135 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEE-NPRVPIIVTGN 193
Query: 182 DFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQAL 238
DFST+YAPLIRDGRMEKFYW P ED + + ++ D + D++ +V TFP Q++
Sbjct: 194 DFSTLYAPLIRDGRMEKFYWAPTREDRIGVCTGIFRTDNVPVDDLVKLVDTFPGQSI 250
>gi|412986205|emb|CCO17405.1| predicted protein [Bathycoccus prasinos]
Length = 596
Score = 224 bits (570), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 123/291 (42%), Positives = 171/291 (58%), Gaps = 28/291 (9%)
Query: 46 YYIAPVFMAS--------LCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEP 97
+Y A FM L IWGGKG GKSF EL +G+ P++ SAGELE AGEP
Sbjct: 99 HYQAKTFMKKRTIVSPLVLGIWGGKGCGKSFNVELACAKLGVLPIVTSAGELEDATAGEP 158
Query: 98 GKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGN-TQMTVNNQIVVGTLMNLSDNP 156
GKL+R RY A ++ + G +CL+INDIDAG+GRF + T TVNNQIV GTLMN++DNP
Sbjct: 159 GKLLRRRYLAAGKMTRETGVPTCLIINDIDAGVGRFKHTTSSTVNNQIVQGTLMNIADNP 218
Query: 157 TRVSIGQDWRESDITN------RIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILN 210
T V + ++ I R+P+I TGNDFS +YAPL RDGRM+KF+W+P+ E+I+
Sbjct: 219 TNV-----YEDTSIVGNRASVPRVPVIVTGNDFSRLYAPLARDGRMDKFFWEPSREEIVG 273
Query: 211 IVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVEN---LG 267
I+ ++ + G+ K + +V FPNQ LDF+ A+R+R D + + VEN
Sbjct: 274 IMTPIFAQHGLDKRDTEKLVSHFPNQPLDFFSAVRNRAIDAFVLDFC-----VENEMAFT 328
Query: 268 NKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYMKN 318
+ LL K + + E L + + EQQ + +LS+EY+ N
Sbjct: 329 SALLDANKSSSQSKVSERTVSYETFLSAARYVQNEQQNVNNLQLSREYLAN 379
>gi|282898324|ref|ZP_06306315.1| AAA ATPase, central region protein [Raphidiopsis brookii D9]
gi|281196855|gb|EFA71760.1| AAA ATPase, central region protein [Raphidiopsis brookii D9]
Length = 362
Score = 218 bits (556), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 113/240 (47%), Positives = 162/240 (67%), Gaps = 5/240 (2%)
Query: 77 MGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGN- 135
MG+ ++S GELES AG+P +LIR RYR +++V+ +GKM LMIND+DAG GRF
Sbjct: 1 MGVGVTLISGGELESPDAGDPARLIRLRYRETAELVKVRGKMCVLMINDLDAGAGRFDEG 60
Query: 136 TQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGR 195
TQ TVN Q+V TLMN++D+PT V + + I R+PII TGNDFST+YAPLIRDGR
Sbjct: 61 TQYTVNTQLVNATLMNIADSPTDVQLPGSYDAKPI-RRVPIIVTGNDFSTLYAPLIRDGR 119
Query: 196 MEKFYWQPNLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISK 255
MEKFYW+PN +D + IV ++ +DG++ E+ +V TFP+Q++DF+ ALRSR YD I
Sbjct: 120 MEKFYWEPNHDDKVGIVGGIFAEDGLSPVEIEQLVNTFPHQSIDFFSALRSRIYDEQIRD 179
Query: 256 WIDDIGGVENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEY 315
+I +I G + + +++ + P F PE T+ L+E+G ++ EQ+ + + L EY
Sbjct: 180 FIHEI-GYDRVSMRVVNSMEPP--PQFQKPEFTLFHLIEAGNVMVGEQKHVESSHLVAEY 236
>gi|100380|pir||S25484 ribulose-bisphosphate carboxylase activase (EC 6.3.4.-) (clone
TA1.1) - common tobacco (fragment)
gi|19992|emb|CAA78704.1| ribulose bisphosphate carboxylase activase [Nicotiana tabacum]
Length = 232
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 107/220 (48%), Positives = 149/220 (67%), Gaps = 6/220 (2%)
Query: 99 KLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPT 157
KLI +RYR A+++++ +G M CL IND+DAG GR G TQ TVNNQ+V TLMN++DNPT
Sbjct: 1 KLISQRYREAAEIIR-KGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT 59
Query: 158 RVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYE 217
V + + + + R+PII TGNDFST+YAPLIRDGRMEKFYW P ED + + ++
Sbjct: 60 NVQLPGMYNKQE-NARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR 118
Query: 218 KDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDK 277
D + ++ V IV TFP Q++DF+GALR+R YD + KW+ G+E +G+KLL
Sbjct: 119 TDNVPEEAVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVSGT-GIEAIGDKLLNSFDGP 177
Query: 278 ELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYMK 317
P F P+ TVE LLE G L++EQ+ + +L++ Y+K
Sbjct: 178 --PTFEQPKMTVEKLLEYGNMLVQEQENVKRVQLAETYLK 215
>gi|149941208|emb|CAO02536.1| putative rubisco activase [Vigna unguiculata]
Length = 214
Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 109/194 (56%), Positives = 133/194 (68%), Gaps = 25/194 (12%)
Query: 36 TRSFEYLQGDYYIAPVFMASLC--------------------IWGGKGQGKSFQTELIFQ 75
T +F+ ++ YYIAP FM L IWGGKGQGKSFQ EL+F
Sbjct: 20 TYNFDNMKDGYYIAPAFMDKLVVHITKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFA 79
Query: 76 AMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRF-G 134
MGI P++MSAGELES AGEP KLIR+RYR A+ +++ +GKM L IND+DAG GR G
Sbjct: 80 KMGINPIVMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCALFINDLDAGAGRLGG 138
Query: 135 NTQMTVNNQIVVGTLMNLSDNPTRVSI-GQDWRESDITNRIPIIFTGNDFSTIYAPLIRD 193
TQ TVNNQ+V TLMN++DNPT V + G +E ++ R+PII TGNDFST+YAPLIRD
Sbjct: 139 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENL--RVPIIVTGNDFSTLYAPLIRD 196
Query: 194 GRMEKFYWQPNLED 207
GRMEKFYW P +D
Sbjct: 197 GRMEKFYWAPTRDD 210
>gi|149941212|emb|CAO02538.1| putative rubisco activase [Vigna unguiculata]
Length = 194
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 107/197 (54%), Positives = 133/197 (67%), Gaps = 25/197 (12%)
Query: 42 LQGDYYIAPVFMASLC--------------------IWGGKGQGKSFQTELIFQAMGIEP 81
++ YYIAP FM L IWGGKGQGKSFQ EL+F MGI P
Sbjct: 1 MKDGYYIAPAFMDKLVVHITKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINP 60
Query: 82 VIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRF-GNTQMTV 140
++MSAGELES AGEP KLIR+RYR A+ +++ +GKM L IND+DAG GR G TQ TV
Sbjct: 61 IVMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCALFINDLDAGAGRLGGTTQYTV 119
Query: 141 NNQIVVGTLMNLSDNPTRVSI-GQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKF 199
NNQ+V TLMN++DNPT V + G +E ++ R+PII TGNDFST+YAPLIRDGRMEKF
Sbjct: 120 NNQMVNATLMNIADNPTNVQLPGMYNKEENL--RVPIIVTGNDFSTLYAPLIRDGRMEKF 177
Query: 200 YWQPNLEDILNIVHRMY 216
YW P +D + + ++
Sbjct: 178 YWAPTRDDRVGVCKGIF 194
>gi|327323113|gb|AEA48974.1| rubisco activase, partial [Rosa roxburghii]
Length = 265
Score = 203 bits (516), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 114/290 (39%), Positives = 154/290 (53%), Gaps = 75/290 (25%)
Query: 47 YIAPVFMASLC--------------------IWGGKGQGKSFQTELIFQAMGIEPVIMSA 86
YIAP FM L IWGGKGQGKSFQ EL+F MGI P++MSA
Sbjct: 11 YIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 70
Query: 87 GELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVV 146
GELES AGEP KLIR+RY GR+
Sbjct: 71 GELESGNAGEPAKLIRQRYLGRDHA-------------------GRY------------- 98
Query: 147 GTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLE 206
N +NP R+PII TGNDFST+YAPLIRDGRMEKFYW P +
Sbjct: 99 ----NKEENP----------------RVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRD 138
Query: 207 DILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENL 266
D + + +++ D + + ++ +V TFP Q++DF+GALR+R YD + KWI + GV+ +
Sbjct: 139 DRIGVCTGIFKTDSVAQSDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGV-GVDGV 197
Query: 267 GNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYM 316
G KL+ ++ P F P+ T+E LLE G L++EQ+ + +L+ +Y+
Sbjct: 198 GKKLVNSKEGP--PTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADQYL 245
>gi|154259484|gb|ABS72022.1| putative ribulose-1,5-bisphosphate carboxylase/oxygenase activase
[Olea europaea]
Length = 261
Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 100/214 (46%), Positives = 145/214 (67%), Gaps = 6/214 (2%)
Query: 106 RTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIGQD 164
R A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ+V TLMN++DNPT V +
Sbjct: 1 REAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGM 59
Query: 165 WRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITKD 224
+ + + R+PII TGNDFST+YAPLIRDGRMEKFYW P ED + + ++ D + +
Sbjct: 60 YNKEE-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDDVPDE 118
Query: 225 EVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVFTP 284
V +V +FP Q++DF+GALR+R YD + KWI + GV+N+G KL+ R+ P F
Sbjct: 119 HVVKLVDSFPGQSIDFFGALRARVYDDEVRKWIGGV-GVDNIGKKLVNSREGP--PTFDQ 175
Query: 285 PEKTVEALLESGYSLLREQQLIMETKLSKEYMKN 318
P+ ++E LLE G L++EQ+ + +L+ +Y+ +
Sbjct: 176 PKMSLEKLLEYGNMLVQEQENVKRVQLADQYLSS 209
>gi|6967045|emb|CAB72439.1| rubisco activase [Pinus halepensis]
Length = 226
Score = 201 bits (511), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 110/218 (50%), Positives = 137/218 (62%), Gaps = 28/218 (12%)
Query: 10 GVIDPLFAGNFLGKDSDIV---FDYRQKVTR--SFEYLQGDYYIAPVFMASLC------- 57
G +D LF + + +DY R S + + YYIAP FM L
Sbjct: 11 GKVDSLFQAPMGSGTHNAIMSSYDYISTAQRTYSLDNMMDGYYIAPAFMDKLVVHISKNF 70
Query: 58 -------------IWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRER 104
IWGGKGQGKSFQ EL+F +GI P++MSAGELES AGEP KLIR+R
Sbjct: 71 MNLPNIKVPLILGIWGGKGQGKSFQCELVFAKLGINPIMMSAGELESGDAGEPAKLIRKR 130
Query: 105 YRTASQVVQNQGKMSCLMINDIDAGLGRFGN-TQMTVNNQIVVGTLMNLSDNPTRVSIGQ 163
YR A+ +V+ +GKM L IND+DAG GR G+ TQ TVNNQ+V TLMN++DNPT V +
Sbjct: 131 YREAADIVK-KGKMCVLFINDLDAGAGRMGSTTQYTVNNQMVNATLMNIADNPTNVQLPG 189
Query: 164 DWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYW 201
+ + + R+PI+ TGNDFST+YAPLIRDGRMEKFYW
Sbjct: 190 MYNKEE-NPRVPIVVTGNDFSTLYAPLIRDGRMEKFYW 226
>gi|117661805|gb|ABK55669.1| chloroplast rubisco activase [Cucumis sativus]
Length = 150
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 96/152 (63%), Positives = 118/152 (77%), Gaps = 3/152 (1%)
Query: 56 LCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQ 115
L +WGGKGQG+SFQ EL+F MGI P++MSAGELES AGEP KLIR+RYR A+ +++ +
Sbjct: 1 LGVWGGKGQGRSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-K 59
Query: 116 GKMSCLMINDIDAGLGRF-GNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRI 174
GKM CL IND+DAG GR G TQ TVNNQ+V TLMN++DNPT V + + + + R+
Sbjct: 60 GKMCCLFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEE-NPRV 118
Query: 175 PIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLE 206
PII TGNDFST+YAPLIRDGRM+KFYW P E
Sbjct: 119 PIIVTGNDFSTLYAPLIRDGRMDKFYWAPTRE 150
>gi|110740175|dbj|BAF01986.1| Rubisco activase [Arabidopsis thaliana]
Length = 259
Score = 197 bits (500), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 97/203 (47%), Positives = 138/203 (67%), Gaps = 5/203 (2%)
Query: 115 QGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNR 173
+GKM CL IND+DAG GR G TQ TVNNQ+V TLMN++DNPT V + + + + R
Sbjct: 4 KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEE-NAR 62
Query: 174 IPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITKDEVGSIVKTF 233
+PII TGNDFST+YAPLIRDGRMEKFYW P ED + + ++ D I +++ ++V F
Sbjct: 63 VPIICTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDKIKDEDIVTLVDQF 122
Query: 234 PNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVFTPPEKTVEALL 293
P Q++DF+GALR+R YD + K+++ + GVE +G +L+ R+ PVF PE T E L+
Sbjct: 123 PGQSIDFFGALRARVYDDEVRKFVESL-GVEKIGKRLVNSREGP--PVFEQPEMTYEKLM 179
Query: 294 ESGYSLLREQQLIMETKLSKEYM 316
E G L+ EQ+ + +L++ Y+
Sbjct: 180 EYGNMLVMEQENVKRVQLAETYL 202
>gi|119855475|gb|ABM01871.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase
activase [Morus alba var. multicaulis]
Length = 246
Score = 190 bits (482), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 95/195 (48%), Positives = 133/195 (68%), Gaps = 5/195 (2%)
Query: 123 INDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGN 181
IND+DAG GR G TQ TVNNQ+V TLMN++DNPT V + + + + R+PII TGN
Sbjct: 1 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEE-NPRVPIIVTGN 59
Query: 182 DFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFY 241
DFST+YAPLIRDGRMEKFYW P ED + + ++ D + ++++ IV TFP Q++DF+
Sbjct: 60 DFSTLYAPLIRDGRMEKFYWAPTREDRIGVCTGIFRSDHVPEEDIVKIVDTFPGQSIDFF 119
Query: 242 GALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLR 301
GALR+R YD + KWI + GVE +G KL+ ++ P F P+ TVE LLE G L++
Sbjct: 120 GALRARVYDDEVRKWISGV-GVETIGKKLVNSKEGP--PTFDQPKMTVEKLLEYGNMLVQ 176
Query: 302 EQQLIMETKLSKEYM 316
EQ+ + +L+ +Y+
Sbjct: 177 EQENVKRVQLADKYL 191
>gi|307104587|gb|EFN52840.1| hypothetical protein CHLNCDRAFT_26386, partial [Chlorella
variabilis]
Length = 239
Score = 189 bits (480), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 97/247 (39%), Positives = 157/247 (63%), Gaps = 11/247 (4%)
Query: 77 MGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNT 136
MG+ PV +SAGELE E AGEPG+ +RERY A++ ++ G+ +CL+I+D+DAG+G F NT
Sbjct: 1 MGVLPVCLSAGELEDEWAGEPGRRLRERYAFAARHTESTGEATCLVISDLDAGVGVFANT 60
Query: 137 QMTVNNQIVVGTLMNLSDNPTRVSIGQDW---RESDITNRIPIIFTGNDFSTIYAPLIRD 193
TVN Q + G+LM L D+P VS GQ+W R + R+PI T ND + +YAPL+R+
Sbjct: 61 ANTVNTQNLQGSLMALCDDPLLVSAGQEWAAVRRRAL--RVPIYVTANDLTCLYAPLVRE 118
Query: 194 GRMEKFYWQPNLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSI 253
GRM+KFY++P+ ++ + ++ + +V ++ FP Q +DF+G++++R D ++
Sbjct: 119 GRMDKFYFEPSRGEMAAALRALFAPQ-LGAADVKVLLDAFPEQPMDFFGSIKARLVDGAV 177
Query: 254 SKWIDDIGGVENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSK 313
+W+ GG + L L++R PE ++ A L +G L EQQ +++T+LS
Sbjct: 178 RRWLHQAGGAQGLSAALVERDG-----AAMEPEVSLAAALAAGEELAAEQQAVLDTRLSL 232
Query: 314 EYMKNID 320
+YMK ++
Sbjct: 233 QYMKGLE 239
>gi|37522136|ref|NP_925513.1| ribulose-bisphosphate carboxylase activase, partial [Gloeobacter
violaceus PCC 7421]
gi|35213136|dbj|BAC90508.1| ribulose-bisphosphate carboxylase activase [Gloeobacter violaceus
PCC 7421]
Length = 294
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 101/269 (37%), Positives = 161/269 (59%), Gaps = 16/269 (5%)
Query: 56 LCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQ 115
L I G KG+GKSF + + Q + +++S+ ELES AGEPG+LIR RYR A+++V+ +
Sbjct: 34 LGIHGPKGEGKSFMVDRVLQELQANVIVISSSELESPDAGEPGRLIRLRYREAAELVKVR 93
Query: 116 GKMSCLMINDIDAGLGRF-GNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRI 174
G+++ ++I+DIDAG G + TQ TVN Q+V LM ++DNPT V + + + + RI
Sbjct: 94 GRVAAIVIHDIDAGAGFWSATTQYTVNTQLVNAALMAIADNPTNVQLPGSYDPTPLP-RI 152
Query: 175 PIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDG--ITKDEVGSIVKT 232
P + TGNDFS +YAPL+RDGRM KF W+P + IV ++ +DG + + ++ +++
Sbjct: 153 PFVVTGNDFSKLYAPLVRDGRMSKFSWEPTFAEKSEIVAHLFAEDGAALGRYDLERLIQR 212
Query: 233 FPNQALDFYGALRSRTYD----RSISKWIDDIGGVENLGNKLLKRRKDKELPVFTPPEKT 288
F Q +DF+ A+RSR YD + + W G+EN+ L+ + P F
Sbjct: 213 FGAQPVDFFAAIRSRAYDDMLLQQVKAW-----GLENVSRNLVN--HGGQPPRFEAVRLD 265
Query: 289 VEALLESGYSLLREQQLIMETKLSKEYMK 317
++ L G ++ +QQ I E+ L + Y +
Sbjct: 266 LDRCLRWGEQIMSDQQAI-ESGLVEAYTR 293
>gi|159885646|dbj|BAF93200.1| RuBisCO activase [Hordeum vulgare]
Length = 158
Score = 180 bits (457), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 86/158 (54%), Positives = 115/158 (72%), Gaps = 3/158 (1%)
Query: 70 TELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAG 129
EL+F MGI P++MSAGELES AGEP KLIR+RYR A+ +++ +GKM CL IND+DAG
Sbjct: 1 CELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADMIK-KGKMCCLFINDLDAG 59
Query: 130 LGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYA 188
GR G TQ TVNNQ+V TLMN++D PT V + + + + R+PI+ TGNDFST+YA
Sbjct: 60 AGRMGGTTQYTVNNQMVNATLMNIADAPTNVQLPGMYNKEE-NPRVPIVVTGNDFSTLYA 118
Query: 189 PLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITKDEV 226
PLIRDGRMEKFYW P +D + + +++ D ++ + V
Sbjct: 119 PLIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVSDESV 156
>gi|307102907|gb|EFN51173.1| hypothetical protein CHLNCDRAFT_141315 [Chlorella variabilis]
Length = 295
Score = 177 bits (449), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 98/253 (38%), Positives = 147/253 (58%), Gaps = 36/253 (14%)
Query: 65 GKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMIN 124
GK+FQ L ++ +GI P++MSAGELES AGEP KLIR+RYR AS V++ +G+M L IN
Sbjct: 50 GKTFQCNLAYKKLGIAPIVMSAGELESGNAGEPAKLIRQRYREASDVIK-KGRMCSLFIN 108
Query: 125 DIDAGLGRFGN-TQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDF 183
D+DAG GR G+ TQ TVNNQ+V TLMN++DNPT V + ++ +I R+PI
Sbjct: 109 DLDAGAGRMGDATQYTVNNQMVNATLMNIADNPTNVQLPGVYKNEEIP-RVPI------- 160
Query: 184 STIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGA 243
D + + +++ D + + +V +V FP Q++DF+GA
Sbjct: 161 -----------------------DRIGVCMGIFQHDNVDRADVEKLVDAFPGQSIDFFGA 197
Query: 244 LRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQ 303
+R+R YD + WI GVEN+G +L+ ++ K F P + L++ G L+ EQ
Sbjct: 198 IRARVYDDKVHDWIMGT-GVENIGKRLINSKEGK--VTFDKPSMDLGTLMKYGNLLVEEQ 254
Query: 304 QLIMETKLSKEYM 316
+ + +L+ EYM
Sbjct: 255 ENVKRVQLADEYM 267
>gi|19988|emb|CAA78702.1| ribulose bisphosphate carboxylase activase [Nicotiana tabacum]
Length = 206
Score = 174 bits (441), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 86/184 (46%), Positives = 121/184 (65%), Gaps = 4/184 (2%)
Query: 134 GNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRD 193
G TQ TVNNQ+V TLMN++DNPT V + + + + R+PII TGNDFST+YAPLIRD
Sbjct: 7 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQE-NARVPIIVTGNDFSTLYAPLIRD 65
Query: 194 GRMEKFYWQPNLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSI 253
GRMEKFYW P ED + + ++ D + ++V IV FP Q++DF+GALR+R YD +
Sbjct: 66 GRMEKFYWAPTREDRIGVCTGIFRTDNVPAEDVVKIVDNFPGQSIDFFGALRARVYDDEV 125
Query: 254 SKWIDDIGGVENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSK 313
KW+ G+E +G+KLL P F P+ T+E LLE G L++EQ+ + +L+
Sbjct: 126 RKWVSGT-GIEKIGDKLLNSFDGP--PTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLAD 182
Query: 314 EYMK 317
+Y+K
Sbjct: 183 KYLK 186
>gi|13569643|gb|AAK31173.1| ribulose-1,5-bisphosphate carboxylase activase [Oryza sativa Indica
Group]
Length = 193
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 78/172 (45%), Positives = 117/172 (68%), Gaps = 4/172 (2%)
Query: 145 VVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPN 204
V TLMN++DNPT V + + + D R+PII TGNDFST+YAPLIRDGRMEKFYW P
Sbjct: 1 VNATLMNIADNPTNVQLPGMYNKED-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT 59
Query: 205 LEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVE 264
+D + + ++ D + +++ IV +FP Q++DF+GALR+R YD + KW+ D GVE
Sbjct: 60 RDDRVGVCKGIFRTDNVPDEDIVKIVDSFPGQSIDFFGALRARVYDDEVRKWVSDT-GVE 118
Query: 265 NLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYM 316
N+G +L+ R+ P F P+ T+E L+E GY L++EQ+ + +L+++Y+
Sbjct: 119 NIGKRLVNSREGP--PEFEQPKMTIEKLIEYGYMLVKEQENVKRVQLAEQYL 168
>gi|388505442|gb|AFK40787.1| unknown [Lotus japonicus]
Length = 187
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 78/173 (45%), Positives = 118/173 (68%), Gaps = 4/173 (2%)
Query: 144 IVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQP 203
+V TLMN++DNPT V + + + D R+PI+ TGND ST+YAPLIRDGRMEKFYW P
Sbjct: 1 MVNATLMNIADNPTNVQLPGMYNKED-NPRVPIVVTGNDSSTLYAPLIRDGRMEKFYWAP 59
Query: 204 NLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGV 263
ED + + +++ D ++++ V +IV TFP Q++DF+GALR+R YD + KWI + GV
Sbjct: 60 TREDRIGVCKGIFQTDNVSEEAVVTIVDTFPGQSIDFFGALRARVYDDEVRKWISGV-GV 118
Query: 264 ENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYM 316
+ +G KL+ ++ PVF P+ T+E LLE G L++EQ+ + +L+ +Y+
Sbjct: 119 DLIGKKLVNSKEGP--PVFEQPKMTLEKLLEYGNMLVQEQENVERVQLADKYL 169
>gi|156106226|gb|ABU49419.1| rubisco activase [Camellia sinensis]
Length = 139
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 79/136 (58%), Positives = 98/136 (72%), Gaps = 3/136 (2%)
Query: 85 SAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQ 143
GELES AGEP KLIR+RYR AS +++ +GKM CL IND+DAG GR G TQ TVNNQ
Sbjct: 2 CPGELESGNAGEPAKLIRQRYREASDIIR-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQ 60
Query: 144 IVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQP 203
+V TLMN++DNPT V + + + D R+PII TGNDFST+YAPLIRDGRMEK +W P
Sbjct: 61 MVNATLMNIADNPTSVQLPGMYNKED-NARVPIIVTGNDFSTLYAPLIRDGRMEKLHWAP 119
Query: 204 NLEDILNIVHRMYEKD 219
N ED + + ++ D
Sbjct: 120 NREDRIGVCMGIFRTD 135
>gi|290760300|gb|ADD54590.1| putative ribulose-1,5-bisphosphate carboxylase/oxygenase activase 1
[Linum usitatissimum]
Length = 178
Score = 157 bits (398), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 82/156 (52%), Positives = 102/156 (65%), Gaps = 24/156 (15%)
Query: 29 FDYRQKVTRSFEY--LQGDYYIAPVFMASLC--------------------IWGGKGQGK 66
+DY K R++++ G +YIAP FM L +WGGKGQGK
Sbjct: 22 YDYISKGLRTYDFDNTMGGFYIAPAFMDKLVVHITKNFLNLPNIKVPLILGVWGGKGQGK 81
Query: 67 SFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDI 126
SFQ EL+F MGI P++MSAGELES AGEP KLIR+RYR AS +++ +GKM CL IND+
Sbjct: 82 SFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREASDIIK-KGKMCCLFINDL 140
Query: 127 DAGLGRF-GNTQMTVNNQIVVGTLMNLSDNPTRVSI 161
DAG GR G TQ TVNNQ+V TLMN++DNPT V +
Sbjct: 141 DAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQL 176
>gi|305855749|gb|ADM67715.1| putative rubisco activase [Rhododendron kawakamii]
Length = 171
Score = 150 bits (379), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 78/145 (53%), Positives = 95/145 (65%), Gaps = 22/145 (15%)
Query: 46 YYIAPVFMASLC--------------------IWGGKGQGKSFQTELIFQAMGIEPVIMS 85
+YIAP FM L IWGGKGQGKSFQ EL+F MGI P++MS
Sbjct: 26 FYIAPAFMDKLIVHISKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 85
Query: 86 AGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRF-GNTQMTVNNQI 144
AGELES AGEP KLIR+RYR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ+
Sbjct: 86 AGELESGNAGEPAKLIRQRYREAADIIR-KGKMCCLFINDLDAGAGRMGGTTQFTVNNQM 144
Query: 145 VVGTLMNLSDNPTRVSIGQDWRESD 169
V TLMN++DNPT V + + + D
Sbjct: 145 VNATLMNIADNPTCVQLPGRYNKED 169
>gi|305855727|gb|ADM67704.1| putative rubisco activase [Pieris japonica var. taiwanensis]
Length = 171
Score = 150 bits (379), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 78/145 (53%), Positives = 95/145 (65%), Gaps = 22/145 (15%)
Query: 46 YYIAPVFMASLC--------------------IWGGKGQGKSFQTELIFQAMGIEPVIMS 85
+YIAP FM L IWGGKGQGKSFQ EL+F MGI P++MS
Sbjct: 26 FYIAPAFMDKLIVHISKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 85
Query: 86 AGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRF-GNTQMTVNNQI 144
AGELES AGEP KLIR+RYR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ+
Sbjct: 86 AGELESGNAGEPAKLIRQRYREAADIIR-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQM 144
Query: 145 VVGTLMNLSDNPTRVSIGQDWRESD 169
V TLMN++DNPT V + + + D
Sbjct: 145 VNATLMNIADNPTSVQLPGMYNKED 169
>gi|305855753|gb|ADM67717.1| putative rubisco activase [Rhododendron hyperythrum]
Length = 171
Score = 150 bits (378), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 78/145 (53%), Positives = 95/145 (65%), Gaps = 22/145 (15%)
Query: 46 YYIAPVFMASLC--------------------IWGGKGQGKSFQTELIFQAMGIEPVIMS 85
+YIAP FM L IWGGKGQGKSFQ EL+F MGI P++MS
Sbjct: 26 FYIAPAFMDKLMVHISKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 85
Query: 86 AGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRF-GNTQMTVNNQI 144
AGELES AGEP KLIR+RYR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ+
Sbjct: 86 AGELESGNAGEPAKLIRQRYREAADIIR-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQM 144
Query: 145 VVGTLMNLSDNPTRVSIGQDWRESD 169
V TLMN++DNPT V + + + D
Sbjct: 145 VNATLMNIADNPTSVQLPGMYNKED 169
>gi|338807894|gb|AEJ07671.1| putative rubisco activase [Rhododendron wiltonii]
Length = 171
Score = 150 bits (378), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 78/145 (53%), Positives = 95/145 (65%), Gaps = 22/145 (15%)
Query: 46 YYIAPVFMASLC--------------------IWGGKGQGKSFQTELIFQAMGIEPVIMS 85
+YIAP FM L IWGGKGQGKSFQ EL+F MGI P++MS
Sbjct: 26 FYIAPAFMDKLMVHISKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 85
Query: 86 AGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRF-GNTQMTVNNQI 144
AGELES AGEP KLIR+RYR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ+
Sbjct: 86 AGELESGNAGEPAKLIRQRYREAADIIR-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQM 144
Query: 145 VVGTLMNLSDNPTRVSIGQDWRESD 169
V TLMN++DNPT V + + + D
Sbjct: 145 VNATLMNIADNPTSVQLPGMYNKED 169
>gi|305855755|gb|ADM67718.1| putative rubisco activase [Rhododendron rubropunctatum]
gi|305855757|gb|ADM67719.1| putative rubisco activase [Rhododendron morii]
gi|305855759|gb|ADM67720.1| putative rubisco activase [Rhododendron pseudochrysanthum]
Length = 171
Score = 150 bits (378), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 78/145 (53%), Positives = 95/145 (65%), Gaps = 22/145 (15%)
Query: 46 YYIAPVFMASLC--------------------IWGGKGQGKSFQTELIFQAMGIEPVIMS 85
+YIAP FM L IWGGKGQGKSFQ EL+F MGI P++MS
Sbjct: 26 FYIAPAFMDKLMVHISKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 85
Query: 86 AGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRF-GNTQMTVNNQI 144
AGELES AGEP KLIR+RYR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ+
Sbjct: 86 AGELESGNAGEPAKLIRQRYREAADIIR-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQM 144
Query: 145 VVGTLMNLSDNPTRVSIGQDWRESD 169
V TLMN++DNPT V + + + D
Sbjct: 145 VNATLMNIADNPTSVQLPGMYNKED 169
>gi|305855747|gb|ADM67714.1| putative rubisco activase [Rhododendron breviperulatum]
Length = 171
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 78/145 (53%), Positives = 95/145 (65%), Gaps = 22/145 (15%)
Query: 46 YYIAPVFMASLC--------------------IWGGKGQGKSFQTELIFQAMGIEPVIMS 85
+YIAP FM L IWGGKGQGKSFQ EL+F MGI P++MS
Sbjct: 26 FYIAPAFMDKLIVHISKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 85
Query: 86 AGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRF-GNTQMTVNNQI 144
AGELES AGEP KLIR+RYR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ+
Sbjct: 86 AGELESGNAGEPAKLIRQRYREAADIIR-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQM 144
Query: 145 VVGTLMNLSDNPTRVSIGQDWRESD 169
V TLMN++DNPT V + + + D
Sbjct: 145 VNATLMNIADNPTCVQLPCMYNKED 169
>gi|305855751|gb|ADM67716.1| putative rubisco activase [Rhododendron formosanum]
Length = 171
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 79/146 (54%), Positives = 97/146 (66%), Gaps = 23/146 (15%)
Query: 46 YYIAPVFMASLC--------------------IWGGKGQGKSFQTELIFQAMGIEPVIMS 85
+YIAP FM L IWGGKGQGKSFQ EL+F MGI P++MS
Sbjct: 26 FYIAPAFMDKLMVHISKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 85
Query: 86 AGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRF-GNTQMTVNNQI 144
AGELES AGEP KLIR+RYR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ+
Sbjct: 86 AGELESGNAGEPAKLIRQRYREAADIIR-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQM 144
Query: 145 VVGTLMNLSDNPTRVSI-GQDWRESD 169
V TLMN++DNPT V + G + +E +
Sbjct: 145 VNATLMNIADNPTSVQLPGMNNKEDN 170
>gi|305855731|gb|ADM67706.1| putative rubisco activase [Rhododendron ellipticum]
gi|305855735|gb|ADM67708.1| putative rubisco activase [Rhododendron nakaharae]
gi|305855737|gb|ADM67709.1| putative rubisco activase [Rhododendron noriakianum]
gi|305855739|gb|ADM67710.1| putative rubisco activase [Rhododendron kanehirai]
gi|305855741|gb|ADM67711.1| putative rubisco activase [Rhododendron simsii]
gi|305855743|gb|ADM67712.1| putative rubisco activase [Rhododendron oldhamii]
gi|305855745|gb|ADM67713.1| putative rubisco activase [Rhododendron rubropilosum]
gi|338807888|gb|AEJ07668.1| putative rubisco activase [Rhododendron simsii]
gi|338807892|gb|AEJ07670.1| putative rubisco activase [Rhododendron seniavinii]
gi|338807896|gb|AEJ07672.1| putative rubisco activase [Rhododendron simsii]
gi|338807898|gb|AEJ07673.1| putative rubisco activase [Rhododendron scabrum]
Length = 171
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 78/145 (53%), Positives = 95/145 (65%), Gaps = 22/145 (15%)
Query: 46 YYIAPVFMASLC--------------------IWGGKGQGKSFQTELIFQAMGIEPVIMS 85
+YIAP FM L IWGGKGQGKSFQ EL+F MGI P++MS
Sbjct: 26 FYIAPAFMDKLIVHISKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 85
Query: 86 AGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRF-GNTQMTVNNQI 144
AGELES AGEP KLIR+RYR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ+
Sbjct: 86 AGELESGNAGEPAKLIRQRYREAADIIR-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQM 144
Query: 145 VVGTLMNLSDNPTRVSIGQDWRESD 169
V TLMN++DNPT V + + + D
Sbjct: 145 VNATLMNIADNPTCVQLPGMYNKED 169
>gi|338807890|gb|AEJ07669.1| putative rubisco activase [Rhododendron chihsinianum]
Length = 171
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 78/145 (53%), Positives = 95/145 (65%), Gaps = 22/145 (15%)
Query: 46 YYIAPVFMASLC--------------------IWGGKGQGKSFQTELIFQAMGIEPVIMS 85
+YIAP FM L IWGGKGQGKSFQ EL+F MGI P++MS
Sbjct: 26 FYIAPAFMDKLMVHISKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 85
Query: 86 AGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRF-GNTQMTVNNQI 144
AGELES AGEP KLIR+RYR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ+
Sbjct: 86 AGELESGNAGEPAKLIRQRYREAADIIR-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQM 144
Query: 145 VVGTLMNLSDNPTRVSIGQDWRESD 169
V TLMN++DNPT V + + + D
Sbjct: 145 VNATLMNIADNPTCVQLPGMYNKED 169
>gi|305855733|gb|ADM67707.1| putative rubisco activase [Rhododendron mariesii]
Length = 171
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 77/137 (56%), Positives = 92/137 (67%), Gaps = 22/137 (16%)
Query: 46 YYIAPVFMASLC--------------------IWGGKGQGKSFQTELIFQAMGIEPVIMS 85
+YIAP FM L IWGGKGQGKSFQ EL+F MGI P++MS
Sbjct: 26 FYIAPAFMDKLIVHISKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 85
Query: 86 AGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRF-GNTQMTVNNQI 144
AGELES AGEP KLIR+RYR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ+
Sbjct: 86 AGELESGNAGEPAKLIRQRYREAADIIR-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQM 144
Query: 145 VVGTLMNLSDNPTRVSI 161
V TLMN++DNPT V +
Sbjct: 145 VNATLMNIADNPTCVQL 161
>gi|37783283|gb|AAP72270.1| ribulose-1,5-bisphosphate carboxylase activase [Triticum aestivum]
Length = 201
Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 70/145 (48%), Positives = 99/145 (68%), Gaps = 5/145 (3%)
Query: 173 RIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITKDEVGSIVKT 232
R+PI+ TGNDFST+YAPLIRDGRMEKFYW P +D + + +++ D ++ + V IV T
Sbjct: 4 RVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVSDESVVKIVDT 63
Query: 233 FPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPV-FTPPEKTVEA 291
FP Q++DF+GALR+R YD + KW+ G+EN+G KL+ R + PV F P+ TVE
Sbjct: 64 FPGQSIDFFGALRARVYDDEVRKWVTST-GIENIGKKLVNSR---DGPVTFEQPKMTVEK 119
Query: 292 LLESGYSLLREQQLIMETKLSKEYM 316
LLE G+ L++EQ + +L+ YM
Sbjct: 120 LLEYGHMLVQEQDNVKRVQLADTYM 144
>gi|305855729|gb|ADM67705.1| putative rubisco activase [Rhododendron ovatum]
Length = 171
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 75/137 (54%), Positives = 92/137 (67%), Gaps = 22/137 (16%)
Query: 46 YYIAPVFMASLC--------------------IWGGKGQGKSFQTELIFQAMGIEPVIMS 85
+YIAP FM L IWGGKGQGKSFQ EL+F MGI P++MS
Sbjct: 26 FYIAPAFMDKLMVHISKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 85
Query: 86 AGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRF-GNTQMTVNNQI 144
AGELES +AGEP KLIR+RYR A+ +++ +GKM CL IND++AG GR G TQ TVNNQ+
Sbjct: 86 AGELESGKAGEPAKLIRQRYREAADIIR-KGKMCCLFINDLEAGAGRMGGTTQYTVNNQM 144
Query: 145 VVGTLMNLSDNPTRVSI 161
V TLMN++ NPT V +
Sbjct: 145 VNATLMNIAHNPTCVQL 161
>gi|168812226|gb|ACA30289.1| putative ribulose-1,5-bisphosphate carboxylase/oxygenase activase
alpha 2 [Cupressus sempervirens]
Length = 145
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 66/140 (47%), Positives = 93/140 (66%), Gaps = 3/140 (2%)
Query: 173 RIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITKDEVGSIVKT 232
R+PI+ TGNDFST+YAPLIRDGRMEKFYW P +D + + ++ D I+ + IV +
Sbjct: 7 RVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFRTDNISDAAIVKIVDS 66
Query: 233 FPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVFTPPEKTVEAL 292
FP Q+++F+GALR+R YD + KWI ++ GVE +G KL+ R P F P TVE L
Sbjct: 67 FPGQSINFFGALRARVYDDEVRKWIGEV-GVEGIGKKLVNSRDGP--PTFEKPAMTVEKL 123
Query: 293 LESGYSLLREQQLIMETKLS 312
LE G L++EQ+ + +L+
Sbjct: 124 LEYGNMLVKEQENVKRVQLA 143
>gi|308810312|ref|XP_003082465.1| 26S proteasome regulatory complex, ATPase RPT4 (ISS) [Ostreococcus
tauri]
gi|116060933|emb|CAL57411.1| 26S proteasome regulatory complex, ATPase RPT4 (ISS) [Ostreococcus
tauri]
Length = 555
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 74/195 (37%), Positives = 108/195 (55%), Gaps = 32/195 (16%)
Query: 150 MNLSDNPTRVSIGQDWRESD----ITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNL 205
MNL D+P VS+G+D R D +T R+PII T ND ST+YAPL+RDGRM+K+YW P
Sbjct: 1 MNLCDHPELVSVGED-RGDDGRNMVTARVPIIVTANDLSTVYAPLLRDGRMDKWYWSPTR 59
Query: 206 EDILNIVHRMY-EKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWID------ 258
+DI +IVH ++ +++ T + +V FP Q LDF+GA R++ YD +I W+
Sbjct: 60 DDICDIVHALFKDEEKWTYEATARLVDEFPGQPLDFFGAARAKVYDDAIHHWMCVDARER 119
Query: 259 --------DIGGVENL-GNKLLKRRKDKELPVFTPPEKTV-------EALLESGYSLLRE 302
+GG +L GN D L + P + V E++ + L R+
Sbjct: 120 CSLLMRKMSVGGDTDLFGNS----GADSSLWRYHTPNEVVRGASITPESVFTAAKELARQ 175
Query: 303 QQLIMETKLSKEYMK 317
Q +M TKLS EY++
Sbjct: 176 QDFMMATKLSTEYLR 190
>gi|125535371|gb|EAY81919.1| hypothetical protein OsI_37097 [Oryza sativa Indica Group]
Length = 360
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 65/158 (41%), Positives = 85/158 (53%), Gaps = 14/158 (8%)
Query: 64 QGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMI 123
QGKSFQ EL+F MGI ++MSAGELES AGEP KLIR+RYR A+ ++ N+GKM L I
Sbjct: 129 QGKSFQCELVFAKMGINLIMMSAGELESGNAGEPAKLIRQRYREAADMI-NKGKMCLLFI 187
Query: 124 NDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDF 183
ND+DAG V+ + G + R Q D+ P +
Sbjct: 188 NDLDAG------RHDAVHGEQPDG---ERDADEHRGQPHQRAAPRDVQPPCPH----HRH 234
Query: 184 STIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGI 221
PLIRDGRM+KFYW P ED + + ++ D +
Sbjct: 235 RQRLLPLIRDGRMDKFYWAPTREDRIGVCRGIFRSDKV 272
>gi|326525631|dbj|BAJ88862.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 74
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/60 (73%), Positives = 50/60 (83%), Gaps = 1/60 (1%)
Query: 1 MNIAVGARAGVIDPLFAGNFLGKDSDIVFDYRQKVTRSFEYLQGDYYIAPVFMASLCIWG 60
MNIAVGAR+G++D LF G FLG+DSDIVFDYRQK TR FEYLQGDYYIAP F+ C+ G
Sbjct: 16 MNIAVGARSGIVDDLFVGKFLGRDSDIVFDYRQKATRKFEYLQGDYYIAPAFLIR-CVTG 74
>gi|187470377|gb|ACD11149.1| ribulose bisphosphate carboxylase activase [Lemna minor]
Length = 68
Score = 95.9 bits (237), Expect = 2e-17, Method: Composition-based stats.
Identities = 45/69 (65%), Positives = 54/69 (78%), Gaps = 1/69 (1%)
Query: 64 QGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMI 123
QGKSFQ EL+F MGI P++MSAGELES AGEP KLIR+RYR A+ ++ +GKM L I
Sbjct: 1 QGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIA-KGKMCALFI 59
Query: 124 NDIDAGLGR 132
ND+DAG GR
Sbjct: 60 NDLDAGAGR 68
>gi|5903101|gb|AAD55659.1|AC008017_32 Unknown protein [Arabidopsis thaliana]
Length = 150
Score = 94.0 bits (232), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 42/53 (79%), Positives = 49/53 (92%)
Query: 1 MNIAVGARAGVIDPLFAGNFLGKDSDIVFDYRQKVTRSFEYLQGDYYIAPVFM 53
+NIAVGAR+G+ID +F G+FLGKDSDIVFDYRQK TRSFE+LQGDYYIAP F+
Sbjct: 91 VNIAVGARSGMIDDVFIGDFLGKDSDIVFDYRQKATRSFEHLQGDYYIAPSFL 143
>gi|338746118|emb|CCC15108.1| rubisco activase [Lepidodinium chlorophorum]
Length = 252
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 56/140 (40%), Positives = 76/140 (54%), Gaps = 26/140 (18%)
Query: 11 VIDPLFAGN-FLGKDSDIVF----DYRQKVTRSFEYLQGDYYIAPVFMAS---------- 55
++D LF G LG + V + QK + +Q YIAP F+
Sbjct: 114 MVDSLFQGQQGLGGTHNAVMSSGPNVHQKNFGDSDVMQDGLYIAPDFLDKMTVHIAKNFL 173
Query: 56 ----------LCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERY 105
L IWGGKGQGK+FQTEL ++ +GI P++MSAGELES AGEP KL+R
Sbjct: 174 ELPLVKVPLILGIWGGKGQGKTFQTELGYRKLGINPIVMSAGELESGNAGEPAKLVRAGN 233
Query: 106 RTASQVVQNQGKMSCLMIND 125
+ AS+ ++ +GKM L IN+
Sbjct: 234 KEASEFIK-KGKMCFLFINE 252
>gi|134035003|sp|P85086.1|RCA_ARAHY RecName: Full=Ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic; Short=RA; Short=RuBisCO activase
Length = 140
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/212 (31%), Positives = 80/212 (37%), Gaps = 104/212 (49%)
Query: 34 KVTRSFEYLQGDYYIAPVFMASLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESER 93
V S+EY+ + + L IWGGK MGI P++MSAGELES
Sbjct: 33 AVMSSYEYISQGLRVPLI----LGIWGGK--------------MGINPIMMSAGELESGN 74
Query: 94 AGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLS 153
AGEP KM CL IND+DAG G
Sbjct: 75 AGEP------------------AKMCCLFINDLDAGAG---------------------- 94
Query: 154 DNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVH 213
R+PII TGNDFST+YAPLIR G +
Sbjct: 95 -------------------RVPIIVTGNDFSTLYAPLIRIGVCTGIF------------- 122
Query: 214 RMYEKDGITKDEVGSIVKTFPNQALDFYGALR 245
+V TFP Q++DF+GALR
Sbjct: 123 --------------RLVDTFPGQSIDFFGALR 140
>gi|133711850|gb|ABO36654.1| RuBisCO activase [Cucumis sativus]
Length = 111
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 64/109 (58%), Gaps = 3/109 (2%)
Query: 203 PNLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGG 262
P ED + I ++ DG+ +++ +V TFP Q++DF+GALR+R YD + KW + G
Sbjct: 2 PTREDRIGICTGIFRTDGVPFEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWAVGV-G 60
Query: 263 VENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKL 311
VE +G L+ ++ P F P+ T+E LLE G L+ EQ+ + KL
Sbjct: 61 VERIGRNLVNSKESP--PTFDQPKMTIEKLLEYGNMLVMEQENVKRVKL 107
>gi|111162643|gb|ABH07508.1| RuBisCO activase, partial [Nicotiana attenuata]
Length = 100
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/99 (40%), Positives = 61/99 (61%), Gaps = 3/99 (3%)
Query: 219 DGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKE 278
D + ++ V IV TFP Q++DF+GALR+R YD + KW+ G+E +G+KLL
Sbjct: 3 DNVPEEAVIKIVDTFPGQSIDFFGALRARVYDDEVRKWVSGT-GIEAIGDKLLNSFDGP- 60
Query: 279 LPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYMK 317
P F P+ TVE LL G L++EQ+ + +L++ Y+K
Sbjct: 61 -PTFEQPKMTVEKLLGYGNMLVQEQENVKRVQLAETYLK 98
>gi|345111061|pdb|3THG|A Chain A, Crystal Structure Of The Creosote Rubisco Activase
C-Domain
Length = 107
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 62/99 (62%), Gaps = 3/99 (3%)
Query: 206 EDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVEN 265
ED + + ++ D + D++ +V TFP Q++DF+GALR+R YD + KW+ ++ GV+
Sbjct: 8 EDRIGVCKGIFRTDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWVSEV-GVDT 66
Query: 266 LGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQ 304
+G KL+ ++ P F P+ T++ LL G L++EQ+
Sbjct: 67 IGKKLVNSKEGP--PSFEQPKMTIDKLLGYGGMLVQEQE 103
>gi|115486825|ref|NP_001068556.1| Os11g0707100 [Oryza sativa Japonica Group]
gi|62733170|gb|AAX95287.1| Similar to ribulose bisphosphate carboxylase/oxygenase activase b,
chloroplastprecursor (rubisco activase b) (ra b) [Oryza
sativa Japonica Group]
gi|62733298|gb|AAX95415.1| ribulose bisphosphate carboxylase/oxygenase activase b,
chloroplastprecursor (rubisco activase b) (ra b)-related
[Oryza sativa Japonica Group]
gi|77552727|gb|ABA95524.1| expressed protein [Oryza sativa Japonica Group]
gi|113645778|dbj|BAF28919.1| Os11g0707100 [Oryza sativa Japonica Group]
gi|125578109|gb|EAZ19331.1| hypothetical protein OsJ_34881 [Oryza sativa Japonica Group]
Length = 366
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/66 (54%), Positives = 46/66 (69%), Gaps = 9/66 (13%)
Query: 64 QGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMI 123
QGKSFQ +L+F MGI ++MS AGEP KLIR+RYR A+ ++ N+GKM L I
Sbjct: 129 QGKSFQCDLVFAKMGINLIMMS--------AGEPAKLIRQRYREAADMI-NKGKMCVLFI 179
Query: 124 NDIDAG 129
ND+DAG
Sbjct: 180 NDLDAG 185
Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 25/33 (75%), Gaps = 1/33 (3%)
Query: 238 LDFYGALRSRTYDRSISKWIDDIGGVENLGNKL 270
+DF+GALR+R Y + +W+ +I GVEN+G +L
Sbjct: 269 IDFFGALRARVYGDEVRRWVAEI-GVENIGRRL 300
>gi|169635155|gb|ACA58354.1| rubisco activase 2 [Arachis diogoi]
Length = 160
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 63/102 (61%), Gaps = 3/102 (2%)
Query: 215 MYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRR 274
++ D + +++ +V TFP Q++DF+GALR+R YD + KW+ GV+ +G KL+ +
Sbjct: 5 IFRTDNVPPEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWV-SGVGVDGVGKKLVNSK 63
Query: 275 KDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYM 316
+ P F P+ T+ LLE G L++EQ+ + +L+ +Y+
Sbjct: 64 EGP--PTFEQPKMTLAKLLEYGNMLVQEQENVKRVQLADKYL 103
>gi|168415082|gb|ACA23474.1| rubisco activase [Arachis diogoi]
Length = 94
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 243 ALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLRE 302
ALR+R YD + KWI +G VE +G KL+ ++ P F P+ T+E LLE G L++E
Sbjct: 1 ALRARVYDDEVRKWISGVG-VEGVGKKLVNSKEGP--PTFEQPKMTLEKLLEYGNMLVQE 57
Query: 303 QQLIMETKLSKEYM 316
Q+ + +L+ +Y+
Sbjct: 58 QENVKRVQLADKYL 71
>gi|356494967|ref|XP_003516352.1| PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic-like [Glycine max]
Length = 118
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 48/78 (61%), Gaps = 3/78 (3%)
Query: 240 FYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSL 299
F+GAL++R YD + KWI + GV+ +G KL+ ++ P F P+ T+ LLE G L
Sbjct: 18 FFGALKARVYDDEVRKWI-SVVGVDFIGKKLVNSKEGP--PNFDQPKMTLSKLLEYGNML 74
Query: 300 LREQQLIMETKLSKEYMK 317
++EQ+ + +L+ Y+K
Sbjct: 75 VQEQENVERVQLADMYLK 92
>gi|145566934|sp|P85111.1|RCA_VITSX RecName: Full=Ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic; Short=RA; Short=RuBisCO activase
Length = 62
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/58 (50%), Positives = 32/58 (55%), Gaps = 18/58 (31%)
Query: 77 MGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG 134
MGI P++MSAGELES AGEP KM CL IND+DAG GR G
Sbjct: 16 MGINPIMMSAGELESGNAGEP------------------AKMCCLFINDLDAGAGRIG 55
>gi|296413658|ref|XP_002836526.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295630353|emb|CAZ80717.1| unnamed protein product [Tuber melanosporum]
Length = 703
Score = 43.9 bits (102), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 63/135 (46%), Gaps = 7/135 (5%)
Query: 21 LGKDSDIVFDYRQKVTRSFEYLQGDYYIAPVFMASLCIWGGKGQGKSFQTELIFQAMGIE 80
+G +++ D + + + + + + + + G G GK+ I + +G+
Sbjct: 160 IGGREEVINDLLEFIAMPLAHPEVNLHTGVQPPCGVLLHGPPGCGKTMLANAIAREVGLP 219
Query: 81 PVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLM-INDIDAGLGRFGNTQMT 139
+ +SA + S +GEP K++RE + A +G CLM +++IDA + NTQ
Sbjct: 220 FIAISAPSIVSGVSGEPEKMLRELFEEA------RGIAPCLMFMDEIDAITQKRDNTQRD 273
Query: 140 VNNQIVVGTLMNLSD 154
+ +IV L + D
Sbjct: 274 MERRIVAQMLTCMDD 288
>gi|356502624|ref|XP_003520118.1| PREDICTED: cell division control protein 48 homolog B-like [Glycine
max]
Length = 606
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 76/168 (45%), Gaps = 21/168 (12%)
Query: 56 LCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQ 115
L ++G G GK+ + + G ++S + AGE +++RE + AS V
Sbjct: 51 LLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHRAHAGESERILREAFSEASSHVA-L 109
Query: 116 GKMSCLMINDIDAGLGRFGNTQ---MTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITN 172
GK S + I++IDA R + + + V +Q+ TLM+ S+ PT + G
Sbjct: 110 GKPSVIFIDEIDALCARRDSKREQDVRVASQLF--TLMD-SNKPTFSTPG---------- 156
Query: 173 RIPIIFTGNDFSTIYAPLIRDGRM--EKFYWQPNLEDILNIVHRMYEK 218
+ ++ + N I L R GR E PN +D I+ ++Y K
Sbjct: 157 -VVVVASTNRVDAIDPALRRSGRFDAEIEVTVPNEDDRFQIL-KLYTK 202
>gi|192361342|ref|YP_001983115.1| putative ATPase [Cellvibrio japonicus Ueda107]
gi|190687507|gb|ACE85185.1| probable ATPase [Cellvibrio japonicus Ueda107]
Length = 507
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 69/146 (47%), Gaps = 21/146 (14%)
Query: 56 LCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQ 115
+ + G +G GKS + + G+ + M G L ++ GE + +RE + A +
Sbjct: 284 ILLLGVQGGGKSLAAKAVAGLWGLPLMRMDVGSLYNKYHGETERNLREALKLADAM---- 339
Query: 116 GKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIP 175
L +++I+ G+ + GN +Q ++GTL+ W ++ T R+
Sbjct: 340 -SPCVLWLDEIEKGMAQDGNDGGV--SQRLLGTLLT-------------WM-AERTTRVF 382
Query: 176 IIFTGNDFSTIYAPLIRDGRMEKFYW 201
I+ T ND S + LIR GR+++ ++
Sbjct: 383 IVATSNDISRLPPELIRKGRLDEIFF 408
>gi|331005299|ref|ZP_08328688.1| ATPase of the AAA+ class [gamma proteobacterium IMCC1989]
gi|330420875|gb|EGG95152.1| ATPase of the AAA+ class [gamma proteobacterium IMCC1989]
Length = 501
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 85/190 (44%), Gaps = 26/190 (13%)
Query: 56 LCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQ 115
L + G +G GKS + I + + + G L ++ GE + +RE + A V
Sbjct: 278 LMLLGVQGGGKSLAAKAIAGLWKVPLLRLDMGALYNKFHGETERNLRETLQLADNV---- 333
Query: 116 GKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIP 175
L +++I+ LG+ N ++ Q V+GTL+ W ++ + +
Sbjct: 334 -SPCVLWMDEIEKSLGQSDNEGIS---QRVLGTLLT-------------WM-AERKSPVF 375
Query: 176 IIFTGNDFSTIYAPLIRDGRMEKFYW--QPNLEDILNIVHRMYEKDGITKDEVGSIVKTF 233
I+ T ND S + L+R GR+++ ++ PNL+D I H ++ + D+ + +K
Sbjct: 376 IVATSNDISRLPPELLRKGRLDEIFFVDLPNLKDRAVIAHIHLKQRNVECDK--NAIKAI 433
Query: 234 PNQALDFYGA 243
F GA
Sbjct: 434 AEATEGFTGA 443
>gi|374386679|ref|ZP_09644177.1| ATP-dependent protease La [Odoribacter laneus YIT 12061]
gi|373223629|gb|EHP45977.1| ATP-dependent protease La [Odoribacter laneus YIT 12061]
Length = 796
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 66/249 (26%), Positives = 108/249 (43%), Gaps = 48/249 (19%)
Query: 37 RSFEYLQGDYYIAPVFMASLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGEL--ESERA 94
R EYL A + LC++G G GK+ + + +A+G E V MS G L ESE
Sbjct: 357 RILEYLAVLKLKADMKSPILCLYGPPGVGKTSLGKSVAKAIGREFVRMSLGGLHDESEIR 416
Query: 95 GE--------PGKLIRERYRTASQVVQNQGKMS-CLMINDIDAGLGRF-GNTQMTVNNQI 144
G PG++I Q ++ G + ++++ID F G+ Q
Sbjct: 417 GHRKTYIGAMPGRII--------QSIKKAGTSNPVFILDEIDKVGNDFRGDPQ------- 461
Query: 145 VVGTLMNLSDNPTRVSIGQDWRESDI-TNRIPIIFTGNDFSTIYAPLIRDGRMEKF---- 199
L+ + D + ++ + D +++ I T ND STI AP +RD RME
Sbjct: 462 --SALLEVLDPEQNTNFHDNFLDIDYDLSKVMFIATANDISTI-APPLRD-RMEIIEVSG 517
Query: 200 YWQPNLEDIL--NIVHRMYEKDGITKDEVGSIVKTFPNQALD-----FYGALRSRTYDRS 252
Y +I +++ + E G++KD V FP++ +D + R+ D+
Sbjct: 518 YLLEEKREIAKRHLIPKQLENHGVSKDHV-----EFPDEIIDVIIEKYTRESGVRSLDKL 572
Query: 253 ISKWIDDIG 261
I+K I I
Sbjct: 573 IAKIIRQIA 581
>gi|193215310|ref|YP_001996509.1| ATPase AAA [Chloroherpeton thalassium ATCC 35110]
gi|193088787|gb|ACF14062.1| AAA ATPase central domain protein [Chloroherpeton thalassium ATCC
35110]
Length = 402
Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 52/104 (50%), Gaps = 10/104 (9%)
Query: 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQN 114
+L +G G GK+ + I +G E +I+S ELES+ GE K IR ++ A++
Sbjct: 187 ALNFYGPPGTGKTLAADAIANYLGKEILIVSYAELESKYVGETPKNIRAAFQKAAKT--- 243
Query: 115 QGKMSCLMINDIDAGLG-RFGNTQMTVNNQIVVG---TLMNLSD 154
+ L ++ D+ LG R N + +N I V TL+ L +
Sbjct: 244 ---GAVLFFDEADSVLGKRLTNISQSADNSINVARSTTLIELDN 284
>gi|90418162|ref|ZP_01226074.1| putative peptidase, M41 family [Aurantimonas manganoxydans
SI85-9A1]
gi|90337834|gb|EAS51485.1| putative peptidase, M41 family [Aurantimonas manganoxydans
SI85-9A1]
Length = 643
Score = 42.7 bits (99), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 78/180 (43%), Gaps = 24/180 (13%)
Query: 60 GGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPG---KLIRERYRTASQVVQNQG 116
G G GK+ + I + G+ + S + +S R+G G K IR + A++ +
Sbjct: 261 GPPGTGKTLLAQAIANSAGVHFIATSYAQWQSNRSGHLGDVTKAIRAVFEAAAKNLP--- 317
Query: 117 KMSCLMINDIDAGLGRFGNTQMT-VNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIP 175
+ + I++ID GR G+ + +V L+ D R RE +
Sbjct: 318 --AIVFIDEIDTVQGRGGSDRSADAWFTAIVTCLLECLDGIGR-------REG-----VV 363
Query: 176 IIFTGNDFSTIYAPLIRDGRMEKFYW--QPNLEDILNIVHRMYEKDGITKDEVGSIVKTF 233
+I ND + + A L+R GR+++ +W P+ E L + R + DGI + + F
Sbjct: 364 VIAACNDDANLDAALVRSGRLDRRFWIDLPD-EASLAGIFRHHLGDGIDASAIDRVATLF 422
>gi|448609636|ref|ZP_21660667.1| ATPase AAA [Haloferax mucosum ATCC BAA-1512]
gi|445746653|gb|ELZ98114.1| ATPase AAA [Haloferax mucosum ATCC BAA-1512]
Length = 587
Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 49/103 (47%), Gaps = 1/103 (0%)
Query: 53 MASLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVV 112
+ SL ++G G GKS+ E I +G I+S G++ S+ K +++ + A +
Sbjct: 376 IPSLLLYGPPGTGKSYLAEAIAGEIGYPYAILSGGDILSQWINASAKQVKQLFSEAKAIA 435
Query: 113 QNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDN 155
G + + +++ID+ L + G +Q VV + +N
Sbjct: 436 DQTGGV-VVFVDEIDSVLSKRGGANQHAEDQKVVNEFLTHLEN 477
>gi|388258720|ref|ZP_10135895.1| putative ATPase [Cellvibrio sp. BR]
gi|387937479|gb|EIK44035.1| putative ATPase [Cellvibrio sp. BR]
Length = 493
Score = 42.0 bits (97), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 69/146 (47%), Gaps = 21/146 (14%)
Query: 56 LCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQ 115
+ + G +G GKS + + G+ + M G L ++ GE + +RE + A +
Sbjct: 270 ILLLGVQGGGKSLAAKAVAGLWGLPLMRMDVGALYNKFHGETERNLREALKLADAM---- 325
Query: 116 GKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIP 175
L +++I+ G+ + GN +Q ++GTL+ W ++ +R+
Sbjct: 326 -SPCVLWLDEIEKGMAQDGNDNGV--SQRLLGTLLT-------------WM-AERRSRVF 368
Query: 176 IIFTGNDFSTIYAPLIRDGRMEKFYW 201
I+ T ND S + LIR GR+++ ++
Sbjct: 369 IVATSNDISRLPPELIRKGRLDEIFF 394
>gi|15227690|ref|NP_178463.1| cell division control protein 48-B [Arabidopsis thaliana]
gi|28201774|sp|Q9ZPR1.1|CD48B_ARATH RecName: Full=Cell division control protein 48 homolog B;
Short=AtCDC48b
gi|4406773|gb|AAD20084.1| putative AAA-type ATPase [Arabidopsis thaliana]
gi|17064734|gb|AAL32521.1| putative AAA-type ATPase [Arabidopsis thaliana]
gi|30725416|gb|AAP37730.1| At2g03670 [Arabidopsis thaliana]
gi|330250640|gb|AEC05734.1| cell division control protein 48-B [Arabidopsis thaliana]
Length = 603
Score = 41.2 bits (95), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 70/166 (42%), Gaps = 17/166 (10%)
Query: 56 LCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQ 115
L ++G G GK+ + Q +++S + AGE K++RE + AS +
Sbjct: 59 LLLYGPPGTGKTSLVRAVVQECDAHLIVLSPHSVHRAHAGESEKVLREAFAEASSHAVSD 118
Query: 116 GKMSCLMINDIDAGLGRF-GNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRI 174
K S + I++ID R + V + TLM+ S+ P S R+
Sbjct: 119 -KPSVIFIDEIDVLCPRRDARREQDVRIASQLFTLMD-SNKP-----------SSSAPRV 165
Query: 175 PIIFTGNDFSTIYAPLIRDGRMEKF--YWQPNLEDILNIVHRMYEK 218
++ + N I L R GR + PN ED L I+ ++Y K
Sbjct: 166 VVVASTNRVDAIDPALRRAGRFDALVEVSTPNEEDRLKIL-QLYTK 210
>gi|330802418|ref|XP_003289214.1| hypothetical protein DICPUDRAFT_16006 [Dictyostelium purpureum]
gi|325080701|gb|EGC34245.1| hypothetical protein DICPUDRAFT_16006 [Dictyostelium purpureum]
Length = 732
Score = 41.2 bits (95), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 77/169 (45%), Gaps = 28/169 (16%)
Query: 54 ASLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQ 113
+ L +WG G GKS + I +M I + + ++ S+ GE ++IRE +++A
Sbjct: 517 SGLLLWGPSGCGKSLMVKAIATSMSINFISIKGSDIYSKWLGESERIIRELFKSA----- 571
Query: 114 NQGKMSCLMIND-IDAGLGRFGNTQMTVNN----QIVVGTLMNLSDNPTRVSIGQDWRES 168
+ C+M D ID+ G++ + + + ++ L+N D
Sbjct: 572 -RLSSPCIMFFDEIDSLALSRGDSNDSSEDGGTGKRILSQLLNEMDG------------I 618
Query: 169 DITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYW--QPNLE---DILNIV 212
+ ++I +I N +I + L+R GR+E P LE DILN++
Sbjct: 619 QVKSQIFLIGCTNTIDSIDSALLRPGRLETLIKVDLPTLEDRIDILNVI 667
>gi|308798689|ref|XP_003074124.1| Nuclear AAA ATPase (VCP subfamily) (ISS) [Ostreococcus tauri]
gi|116000296|emb|CAL49976.1| Nuclear AAA ATPase (VCP subfamily) (ISS) [Ostreococcus tauri]
Length = 723
Score = 40.8 bits (94), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 71/165 (43%), Gaps = 19/165 (11%)
Query: 52 FMASLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQV 111
F L + G G GK+ + G E + +S+G++ AGE K +R+ + A ++
Sbjct: 240 FPRGLLLHGPPGTGKTEAVRAVSAEAGAETLTVSSGDVAGAYAGESEKRLRKVFERARKL 299
Query: 112 VQNQGKMSCLMINDIDAGLG--RFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESD 169
V+ +G ++I+++DA R GN + VV L+ L D S
Sbjct: 300 VK-KGSPCVIVIDELDAMCPTRRDGNA----HEARVVAQLLTLMDGAGESS--------- 345
Query: 170 ITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQ--PNLEDILNIV 212
+P++ T + + I L R GR ++ PNL IV
Sbjct: 346 -EVHVPVVATTSRPNAIDPALRRPGRFDREIEMSLPNLHARAEIV 389
>gi|357167908|ref|XP_003581390.1| PREDICTED: cell division control protein 48 homolog B-like
[Brachypodium distachyon]
Length = 600
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 50/209 (23%), Positives = 91/209 (43%), Gaps = 28/209 (13%)
Query: 17 AGNFLGKDSDIVFDYRQKVTRSFEYLQGDYYIAPVFMASLCIWGGKGQGKSFQTELIFQA 76
AGN + D+ R+ V F Y + + + L ++G G GK+ + + +
Sbjct: 63 AGNRMALDA-----LRELVVYPFIYARQSRLLGLKWPRGLLLYGPPGTGKTSLVQAMVRE 117
Query: 77 MGIEPVIMSAGELESERAGEPGKLIRERYRTA-SQVVQNQGKMSCLMINDIDAGLGRFGN 135
+++ + AGE K +RE + A SQ +QG+ + + I+++DA R N
Sbjct: 118 CNAHLTMINPYSVHKAHAGEGEKFLREAFSEAYSQA--SQGRPAIIFIDELDAICPRRDN 175
Query: 136 TQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIP---IIFTGNDFSTIYAPLIR 192
+ + +VG L+ L D + T ++P ++ + N I L R
Sbjct: 176 KREQESR--IVGQLLTLMDGNKK------------TVKLPHVVVVASTNRVDAIDPALRR 221
Query: 193 DGRM--EKFYWQPNLEDILNIVHRMYEKD 219
GR E P+LE+ L I+ ++Y K+
Sbjct: 222 PGRFDSEIEVTVPSLEERLQIL-KLYTKN 249
>gi|257388390|ref|YP_003178163.1| Vesicle-fusing ATPase [Halomicrobium mukohataei DSM 12286]
gi|257170697|gb|ACV48456.1| Vesicle-fusing ATPase [Halomicrobium mukohataei DSM 12286]
Length = 703
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 42/185 (22%), Positives = 77/185 (41%), Gaps = 35/185 (18%)
Query: 30 DYRQKVTRSFEYLQGDYYIAPVFMAS-------LCIWGGKGQGKSFQTELIFQAMGIEPV 82
D ++++T + E+ P+F A+ + ++G G GK+ I G+ +
Sbjct: 459 DVKERLTEAVEWP---LAYGPLFSATDTDPPSGVLLYGPPGTGKTLLARAIAGESGVNFI 515
Query: 83 IMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNN 142
++ EL GE + +RE + A Q S + +++IDA G+ G + V+
Sbjct: 516 HVNGPELLDRYVGESEESVREMFERARQTAP-----SIVFLDEIDAVAGQRGESN-EVSE 569
Query: 143 QIVVGTLMNL---SDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKF 199
++V L L ++NP V ++ N T+ L+R GR E+
Sbjct: 570 RVVSQLLTELDGITENPNLV----------------VLAATNRRETLDDALLRPGRFEQH 613
Query: 200 YWQPN 204
PN
Sbjct: 614 VEVPN 618
>gi|123966592|ref|YP_001011673.1| AAA family ATPase [Prochlorococcus marinus str. MIT 9515]
gi|123200958|gb|ABM72566.1| ATPase of the AAA+ family [Prochlorococcus marinus str. MIT 9515]
Length = 488
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 41/185 (22%), Positives = 79/185 (42%), Gaps = 26/185 (14%)
Query: 37 RSFEYLQGDYYIAPVFMASLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGE 96
R+F DY + P+ L + G +G GKS + I Q+ + + + G L S G
Sbjct: 246 RAFSKEARDYGL-PIPKGVLLV-GPQGTGKSLTAKSISQSWSMPLLRLDVGRLFSSLVGS 303
Query: 97 PGKLIRERYRTASQVVQNQGKMSCLM-INDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDN 155
RT +++ + C++ I++ID G G + + +++ L +++
Sbjct: 304 ------SEARTRETILRAEAMSPCILWIDEIDKGFGGDARSDGGTSQRVLASLLTWMAEK 357
Query: 156 PTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYW--QPNLEDILNIVH 213
+ V + I T N + A L+R GR ++ ++ PN E+ L+I+
Sbjct: 358 ESAVFV---------------IATANAIDKLPAELLRKGRFDEIFFLDLPNSEERLSILD 402
Query: 214 RMYEK 218
+K
Sbjct: 403 LHLKK 407
>gi|83648777|ref|YP_437212.1| ATPase [Hahella chejuensis KCTC 2396]
gi|83636820|gb|ABC32787.1| ATPase of the AAA+ class [Hahella chejuensis KCTC 2396]
Length = 495
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 82/170 (48%), Gaps = 25/170 (14%)
Query: 56 LCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQ 115
+ + G +G GKS + + G+ + M G L ++ GE + +RE + A +
Sbjct: 271 IMLLGVQGGGKSLAAKAVAGMWGLPLLRMDMGALYNKFFGETERNMREALQLAELM---- 326
Query: 116 GKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIP 175
L I++I+ GLG+ GN Q ++ V+GTL+ W S+ + +
Sbjct: 327 -SPCVLWIDEIEKGLGQDGNDQGV--SKRVLGTLLT-------------WM-SENKHPVF 369
Query: 176 IIFTGNDFSTIYAPLIRDGRMEKFYW--QPNLEDILNIVHRMY-EKDGIT 222
++ T N+ + L+R GR+++ ++ P LE + NI+ ++ +K G+
Sbjct: 370 LVATANNIKALPPELMRKGRIDEIFFVDLPTLE-VRNIIFSIHLQKRGLA 418
>gi|225425863|ref|XP_002266185.1| PREDICTED: cell division control protein 48 homolog C-like [Vitis
vinifera]
Length = 825
Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 81/194 (41%), Gaps = 21/194 (10%)
Query: 14 PLFAGNFLGKDSDIVFDYRQKVTRSFEYLQGDYYIAPVFMASLCIWGGKGQGKSFQTELI 73
P+F+ LG +V D + +V Y + ++ MA + + G G GK+ I
Sbjct: 246 PMFSD--LGGMKSVVEDLKMEVIVPLYYPELPRWLGVRPMAGILLHGPPGCGKTKLAHAI 303
Query: 74 FQAMGIEPVIMSAGELESERAGEPGKLIRE----RYRTASQVVQNQGKMSCLMINDIDAG 129
+ +SA E+ S +G + IRE YRTA +V I++IDA
Sbjct: 304 ANETKVPFYKISATEVVSGVSGASEENIRELFSKAYRTAPSIV---------FIDEIDAI 354
Query: 130 LGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDW-RESDITNRIP----IIFTGNDFS 184
+ N + +IV LM D R+ D +ES+I++ P +I N
Sbjct: 355 ASKRENLNREMERRIVT-QLMTCMDESNRLVQPADGDKESEISHHKPGYVLVIGATNRPD 413
Query: 185 TIYAPLIRDGRMEK 198
+ L R GR ++
Sbjct: 414 AVDPALRRPGRFDR 427
>gi|119490332|ref|ZP_01622810.1| AAA ATPase, central region [Lyngbya sp. PCC 8106]
gi|119453991|gb|EAW35145.1| AAA ATPase, central region [Lyngbya sp. PCC 8106]
Length = 519
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 47/199 (23%), Positives = 79/199 (39%), Gaps = 39/199 (19%)
Query: 60 GGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMS 119
G +G GKS + I + + + G L GE +R+ + A V
Sbjct: 269 GIQGTGKSLSAKTIAAEWKLPLLRLDVGRLFGGIVGESESRVRQVIKLAEAV-----SPC 323
Query: 120 CLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFT 179
L I++ID + + + + V GT + W ++ T+ + I+ T
Sbjct: 324 VLWIDEIDKAFSQNYSRGDSGTSNRVFGTFIT-------------WL-AEKTSPVFIVAT 369
Query: 180 GNDFSTIYAPLIRDGRMEKFYW-----QPNLEDILNI-VHRMYEKDGITKDEVGSIVKTF 233
N+ + A LIR GR+++ +W QP E I + +HR+ + F
Sbjct: 370 ANNVEALPAELIRKGRLDEIFWIGLPSQPEREQIFQVHLHRLRP-------------ERF 416
Query: 234 PNQALDFYGALRSRTYDRS 252
N DF+ L SR+ D S
Sbjct: 417 KNNEFDFH-LLASRSLDFS 434
>gi|297738362|emb|CBI27563.3| unnamed protein product [Vitis vinifera]
Length = 769
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 55/221 (24%), Positives = 91/221 (41%), Gaps = 26/221 (11%)
Query: 14 PLFAGNFLGKDSDIVFDYRQKVTRSFEYLQGDYYIAPVFMASLCIWGGKGQGKSFQTELI 73
P+F+ LG +V D + +V Y + ++ MA + + G G GK+ I
Sbjct: 190 PMFSD--LGGMKSVVEDLKMEVIVPLYYPELPRWLGVRPMAGILLHGPPGCGKTKLAHAI 247
Query: 74 FQAMGIEPVIMSAGELESERAGEPGKLIRE----RYRTASQVVQNQGKMSCLMINDIDAG 129
+ +SA E+ S +G + IRE YRTA +V I++IDA
Sbjct: 248 ANETKVPFYKISATEVVSGVSGASEENIRELFSKAYRTAPSIV---------FIDEIDAI 298
Query: 130 LGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDW-RESDITNRIP----IIFTGNDFS 184
+ N + +IV LM D R+ D +ES+I++ P +I N
Sbjct: 299 ASKRENLNREMERRIVT-QLMTCMDESNRLVQPADGDKESEISHHKPGYVLVIGATNRPD 357
Query: 185 TIYAPLIRDGRMEKFYW-----QPNLEDILNIVHRMYEKDG 220
+ L R GR ++ + DIL+++ R +G
Sbjct: 358 AVDPALRRPGRFDREIALGVPDESARADILSVITRNLRLEG 398
>gi|429217576|ref|YP_007175566.1| AAA ATPase [Caldisphaera lagunensis DSM 15908]
gi|429134105|gb|AFZ71117.1| AAA family ATPase, CDC48 subfamily [Caldisphaera lagunensis DSM
15908]
Length = 734
Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 48/221 (21%), Positives = 91/221 (41%), Gaps = 38/221 (17%)
Query: 56 LCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQ 115
+ ++G G GK+ + + G + + E+ S+ GE + IRE ++ A Q
Sbjct: 496 VLLFGPPGTGKTLLAKAVATESGANFITIRGPEVLSKWVGESERAIREIFKKARQYAP-- 553
Query: 116 GKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIP 175
+ ++IDA G + T + +V L+ D T D+ N +
Sbjct: 554 ---VVVFFDEIDAIAALRGIDEGTRVGERIVSQLLTEIDGIT-----------DLQNVV- 598
Query: 176 IIFTGNDFSTIYAPLIRDGRMEKFYWQP------------------NLEDILNIVHRMYE 217
+I N + LIR GR+EK + P L D ++++
Sbjct: 599 VIAATNRPEMVDPALIRPGRLEKLVYVPPPDEKGRVEILQIHTRNVPLADDVDLIEIAKR 658
Query: 218 KDGITKDEVGSIVKTFPNQAL--DFY-GALRSRTYDRSISK 255
+G T ++ ++V+ QAL D G ++++ +D ++SK
Sbjct: 659 TNGYTGADLAALVREAAMQALREDLQNGIVKNKHFDVALSK 699
>gi|344338327|ref|ZP_08769259.1| AAA ATPase central domain protein [Thiocapsa marina 5811]
gi|343801609|gb|EGV19551.1| AAA ATPase central domain protein [Thiocapsa marina 5811]
Length = 534
Score = 39.7 bits (91), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 85/199 (42%), Gaps = 40/199 (20%)
Query: 19 NFLGKDSDIVFDYRQKVTRSFEYLQG------------DYYIAPVFMA----SLCIWGGK 62
+ LG +S I F+Y TRSF + G D ++ P A + + G +
Sbjct: 220 DLLGPESAISFEYD---TRSFAEVAGLGNLKAWIDRRRDAFLDPDRKADHPRGVLLLGVQ 276
Query: 63 GQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLM 122
G GKS + + G+ + + G L + GE K +R+ TA + L
Sbjct: 277 GGGKSLAAKAVAGRFGVPLLRLDFGALYDKYIGETEKNLRKALATADVM-----SPCVLW 331
Query: 123 INDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGND 182
I++I+ G+ G V + V+GTL+ W ++ +R+ + T ND
Sbjct: 332 IDEIEKGVA-TGAEDDGVGRR-VLGTLLT-------------WM-AERNSRVFLTATAND 375
Query: 183 FSTIYAPLIRDGRMEKFYW 201
S + LIR GR+++ ++
Sbjct: 376 ISRLPPELIRKGRIDELFF 394
>gi|354546783|emb|CCE43515.1| hypothetical protein CPAR2_211590 [Candida parapsilosis]
Length = 391
Score = 39.7 bits (91), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 32/154 (20%), Positives = 69/154 (44%), Gaps = 19/154 (12%)
Query: 56 LCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQ 115
+ ++G G GK+ + + A + ++ E + GE +++R+ +R A +
Sbjct: 172 VLLYGPPGTGKTMLVKAVANATKASFIRINGSEFVQKYLGEGPRMVRDVFRLA-----RE 226
Query: 116 GKMSCLMINDIDAGLGRFGNTQMTVNNQI--VVGTLMNLSDNPTRVSIGQDWRESDITNR 173
+ + I++IDA + + Q + ++ ++ L+N D D T+
Sbjct: 227 NSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDG------------FDQTSN 274
Query: 174 IPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLED 207
+ +I N T+ L+R GR+++ PNL+D
Sbjct: 275 VKVIMATNRADTLDPALLRPGRLDRKIEFPNLKD 308
>gi|448513293|ref|XP_003866916.1| Pr26 protein [Candida orthopsilosis Co 90-125]
gi|380351254|emb|CCG21478.1| Pr26 protein [Candida orthopsilosis Co 90-125]
Length = 391
Score = 39.7 bits (91), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 32/154 (20%), Positives = 69/154 (44%), Gaps = 19/154 (12%)
Query: 56 LCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQ 115
+ ++G G GK+ + + A + ++ E + GE +++R+ +R A +
Sbjct: 172 VLLYGPPGTGKTMLVKAVANATKASFIRINGSEFVQKYLGEGPRMVRDVFRLA-----RE 226
Query: 116 GKMSCLMINDIDAGLGRFGNTQMTVNNQI--VVGTLMNLSDNPTRVSIGQDWRESDITNR 173
+ + I++IDA + + Q + ++ ++ L+N D D T+
Sbjct: 227 NSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDG------------FDQTSN 274
Query: 174 IPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLED 207
+ +I N T+ L+R GR+++ PNL+D
Sbjct: 275 VKVIMATNRADTLDPALLRPGRLDRKIEFPNLKD 308
>gi|302308716|ref|NP_985735.2| AFR188Wp [Ashbya gossypii ATCC 10895]
gi|299790761|gb|AAS53559.2| AFR188Wp [Ashbya gossypii ATCC 10895]
Length = 827
Score = 39.7 bits (91), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 79/170 (46%), Gaps = 22/170 (12%)
Query: 54 ASLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQ 113
A + +WG G GK+ + + + + EL ++ GE + IR+ + A
Sbjct: 558 AGVLLWGPPGCGKTLLAKAVANESRANFISIKGPELLNKYVGESERAIRQVFTRA----- 612
Query: 114 NQGKMSCLM-INDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITN 172
+ + C++ +++DA + R +T ++ ++ VV TL+ D G + R
Sbjct: 613 -RASVPCVIFFDELDALVPR-RDTSLSESSSRVVNTLLTELD-------GLNDRRG---- 659
Query: 173 RIPIIFTGNDFSTIYAPLIRDGRMEK--FYWQPNLEDILNIVHRMYEKDG 220
I +I N I ++R GR++K F PN ++ L+I+H + + +G
Sbjct: 660 -IFVIGATNRPDMIDPAMLRPGRLDKTLFIELPNADEKLDIMHTLVKSNG 708
>gi|374108966|gb|AEY97872.1| FAFR188Wp [Ashbya gossypii FDAG1]
Length = 827
Score = 39.7 bits (91), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 79/170 (46%), Gaps = 22/170 (12%)
Query: 54 ASLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQ 113
A + +WG G GK+ + + + + EL ++ GE + IR+ + A
Sbjct: 558 AGVLLWGPPGCGKTLLAKAVANESRANFISIKGPELLNKYVGESERAIRQVFTRA----- 612
Query: 114 NQGKMSCLM-INDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITN 172
+ + C++ +++DA + R +T ++ ++ VV TL+ D G + R
Sbjct: 613 -RASVPCVIFFDELDALVPR-RDTSLSESSSRVVNTLLTELD-------GLNDRRG---- 659
Query: 173 RIPIIFTGNDFSTIYAPLIRDGRMEK--FYWQPNLEDILNIVHRMYEKDG 220
I +I N I ++R GR++K F PN ++ L+I+H + + +G
Sbjct: 660 -IFVIGATNRPDMIDPAMLRPGRLDKTLFIELPNADEKLDIMHTLVKSNG 708
>gi|149248778|ref|XP_001528776.1| 26S protease regulatory subunit 6B [Lodderomyces elongisporus NRRL
YB-4239]
gi|146448730|gb|EDK43118.1| 26S protease regulatory subunit 6B [Lodderomyces elongisporus NRRL
YB-4239]
Length = 388
Score = 39.7 bits (91), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 32/154 (20%), Positives = 69/154 (44%), Gaps = 19/154 (12%)
Query: 56 LCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQ 115
+ ++G G GK+ + + A + ++ E + GE +++R+ +R A +
Sbjct: 169 VLLYGPPGTGKTMLVKAVANATKASFIRINGSEFVQKYLGEGPRMVRDVFRLA-----RE 223
Query: 116 GKMSCLMINDIDAGLGRFGNTQMTVNNQI--VVGTLMNLSDNPTRVSIGQDWRESDITNR 173
+ + I++IDA + + Q + ++ ++ L+N D D T+
Sbjct: 224 NSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDG------------FDQTSN 271
Query: 174 IPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLED 207
+ +I N T+ L+R GR+++ PNL+D
Sbjct: 272 VKVIMATNRADTLDPALLRPGRLDRKIEFPNLKD 305
>gi|259488300|tpe|CBF87639.1| TPA: AAA family ATPase/60S ribosome export protein Rix7, putative
(AFU_orthologue; AFUA_1G09210) [Aspergillus nidulans
FGSC A4]
Length = 729
Score = 39.3 bits (90), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 79/189 (41%), Gaps = 33/189 (17%)
Query: 44 GDYYIAP-----VFMAS-------LCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELES 91
GD I P V++AS + + G G GK+ +G+ + +SA + S
Sbjct: 178 GDLVILPMTRPQVYLASNVQPPRGVLLHGPPGCGKTMIANAFAAELGVPFISISAPSIVS 237
Query: 92 ERAGEPGKLIRERYRTASQVVQNQGKMSCLM-INDIDAGLGRFGNTQMTVNNQIVVGTLM 150
+GE K +RE + A ++ CL+ I++IDA + N+Q + +IV L
Sbjct: 238 GMSGESEKALREHFEEAKRLA------PCLIFIDEIDAITPKRENSQREMEKRIVAQLLT 291
Query: 151 NLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEK-----FYWQPNL 205
+ D + G+ + ++ N ++ A L R GR +K +P
Sbjct: 292 CMDDLALEKTDGKP---------VIVLAATNRPDSLDAALRRGGRFDKEINMTVPSEPVR 342
Query: 206 EDILNIVHR 214
E IL + R
Sbjct: 343 EQILRALTR 351
>gi|227202724|dbj|BAH56835.1| AT1G73110 [Arabidopsis thaliana]
Length = 115
Score = 39.3 bits (90), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/24 (70%), Positives = 22/24 (91%)
Query: 1 MNIAVGARAGVIDPLFAGNFLGKD 24
+NIAVGAR+G+ID +F G+FLGKD
Sbjct: 91 VNIAVGARSGMIDDVFIGDFLGKD 114
>gi|326506470|dbj|BAJ86553.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 569
Score = 38.9 bits (89), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 84/190 (44%), Gaps = 14/190 (7%)
Query: 32 RQKVTRSFEYLQGDYYIAPVFMASLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELES 91
R+ V F Y + + + L ++G G GK+ + + + +++ +
Sbjct: 41 RELVIYPFLYARQSRLLGLKWPRGLLLYGPPGTGKTSLVQAMVRECNAHLTMINPYSVHK 100
Query: 92 ERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMN 151
AGE K +RE + + S +QG+ + + I+++DA R N++ ++I VG L+
Sbjct: 101 AHAGEGEKFLREAF-SESYSQASQGRPAIIFIDELDAICPRR-NSRREQESRI-VGQLLT 157
Query: 152 LSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRM--EKFYWQPNLEDIL 209
L D + + S + ++ + N I L R GR E P LE+ L
Sbjct: 158 LMDG--------NKKSSKKLPHVVVVASTNRVDAIDPALRRPGRFDSEIEVTVPTLEERL 209
Query: 210 NIVHRMYEKD 219
I+ ++Y K+
Sbjct: 210 QIL-KLYSKN 218
>gi|67521818|ref|XP_658970.1| hypothetical protein AN1366.2 [Aspergillus nidulans FGSC A4]
gi|40746393|gb|EAA65549.1| hypothetical protein AN1366.2 [Aspergillus nidulans FGSC A4]
Length = 628
Score = 38.9 bits (89), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 79/189 (41%), Gaps = 33/189 (17%)
Query: 44 GDYYIAP-----VFMAS-------LCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELES 91
GD I P V++AS + + G G GK+ +G+ + +SA + S
Sbjct: 77 GDLVILPMTRPQVYLASNVQPPRGVLLHGPPGCGKTMIANAFAAELGVPFISISAPSIVS 136
Query: 92 ERAGEPGKLIRERYRTASQVVQNQGKMSCLM-INDIDAGLGRFGNTQMTVNNQIVVGTLM 150
+GE K +RE + A ++ CL+ I++IDA + N+Q + +IV L
Sbjct: 137 GMSGESEKALREHFEEAKRLA------PCLIFIDEIDAITPKRENSQREMEKRIVAQLLT 190
Query: 151 NLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEK-----FYWQPNL 205
+ D + G+ + ++ N ++ A L R GR +K +P
Sbjct: 191 CMDDLALEKTDGKP---------VIVLAATNRPDSLDAALRRGGRFDKEINMTVPSEPVR 241
Query: 206 EDILNIVHR 214
E IL + R
Sbjct: 242 EQILRALTR 250
>gi|449478622|ref|XP_004155372.1| PREDICTED: LOW QUALITY PROTEIN: cell division control protein 48
homolog B-like [Cucumis sativus]
Length = 614
Score = 38.9 bits (89), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 56 LCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQ 115
L ++G G GK+ I Q G +S + AGE K++RE + AS + +
Sbjct: 60 LLLYGPPGTGKTSLVRAIVQESGAHLTTISPHSVHRAHAGESEKVLREAFTKASSLAIS- 118
Query: 116 GKMSCLMINDIDA 128
G+ S + I++IDA
Sbjct: 119 GRPSVIFIDEIDA 131
>gi|359484119|ref|XP_002267202.2| PREDICTED: cell division control protein 48 homolog B-like [Vitis
vinifera]
Length = 605
Score = 38.9 bits (89), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 65/145 (44%), Gaps = 17/145 (11%)
Query: 56 LCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQ 115
L ++G G GK+ + + G +S + AGE +++RE + AS +
Sbjct: 53 LLLYGPPGTGKTSLVRAVVRECGAHLTTISPHTVHRAHAGESERILREAFSEASSHAVS- 111
Query: 116 GKMSCLMINDIDAGLGRFGNTQ---MTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITN 172
GK S + I++IDA R + + + + +Q+ TLM+ S+ P S+ Q
Sbjct: 112 GKPSVIFIDEIDALCPRRSSRREQDIRLASQLF--TLMD-SNKPLSASVPQ--------- 159
Query: 173 RIPIIFTGNDFSTIYAPLIRDGRME 197
+ ++ + N I L R GR +
Sbjct: 160 -VVVVASTNRVDAIDPALRRSGRFD 183
>gi|312082008|ref|XP_003143266.1| ATPase [Loa loa]
Length = 714
Score = 38.9 bits (89), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 67/151 (44%), Gaps = 15/151 (9%)
Query: 58 IWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGK 117
+ G G GK+ + I + + ++ EL S +GE + IR + A +V
Sbjct: 182 LHGPPGCGKTLFAQAIAGQFKLPILKVAVTELVSGVSGETEQKIRLLFNKAIEVAP---- 237
Query: 118 MSCLMINDIDAGLGRFGNTQMTVNNQIV---VGTLMNLSDNPTRVSIGQDWRESDIT--- 171
L+++DIDA + N Q + +IV V L +LS+ V + D + D++
Sbjct: 238 -CVLLLDDIDAIASKRDNAQREMERRIVSQLVACLDDLSNPREDVELNADSTDVDLSIRK 296
Query: 172 ----NRIPIIFTGNDFSTIYAPLIRDGRMEK 198
N + +I T + TI L R GR +K
Sbjct: 297 IRKGNLVLVIGTTSRVETIDPALRRAGRFDK 327
>gi|393907872|gb|EFO20801.2| ATPase [Loa loa]
Length = 741
Score = 38.9 bits (89), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 67/151 (44%), Gaps = 15/151 (9%)
Query: 58 IWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGK 117
+ G G GK+ + I + + ++ EL S +GE + IR + A +V
Sbjct: 182 LHGPPGCGKTLFAQAIAGQFKLPILKVAVTELVSGVSGETEQKIRLLFNKAIEVAP---- 237
Query: 118 MSCLMINDIDAGLGRFGNTQMTVNNQIV---VGTLMNLSDNPTRVSIGQDWRESDIT--- 171
L+++DIDA + N Q + +IV V L +LS+ V + D + D++
Sbjct: 238 -CVLLLDDIDAIASKRDNAQREMERRIVSQLVACLDDLSNPREDVELNADSTDVDLSIRK 296
Query: 172 ----NRIPIIFTGNDFSTIYAPLIRDGRMEK 198
N + +I T + TI L R GR +K
Sbjct: 297 IRKGNLVLVIGTTSRVETIDPALRRAGRFDK 327
>gi|449435300|ref|XP_004135433.1| PREDICTED: cell division control protein 48 homolog B-like [Cucumis
sativus]
Length = 614
Score = 38.9 bits (89), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 56 LCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQ 115
L ++G G GK+ I Q G +S + AGE K++RE + AS + +
Sbjct: 60 LLLYGPPGTGKTSLVRAIVQESGAHLTTISPHSVHRAHAGESEKVLREAFTKASSLAIS- 118
Query: 116 GKMSCLMINDIDA 128
G+ S + I++IDA
Sbjct: 119 GRPSVIFIDEIDA 131
>gi|325182391|emb|CCA16844.1| cell division cycle protein 48 putative [Albugo laibachii Nc14]
Length = 854
Score = 38.9 bits (89), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 85/193 (44%), Gaps = 31/193 (16%)
Query: 58 IWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRE---RYRTASQVVQN 114
++G G GKS +++ + V + + E+ S+ G+ + IR+ R R+AS
Sbjct: 617 LYGPSGCGKSLLAKVLAARANVNFVSIKSSEIMSKYFGDSEQAIRQVFARARSASP---- 672
Query: 115 QGKMSCLMINDIDA-GLGRFGNTQM-----------TVNNQIVVGTLMNLSDNPTRVS-I 161
S L ++ DA RFG Q +V N+I + T +N D
Sbjct: 673 ----SILFFDEFDAVACKRFGEAQTKGSDAAAFDGSSVYNRI-LSTFLNEMDGIGHAKRS 727
Query: 162 GQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEK--FYWQPNLED---ILNIV-HRM 215
G ++++ ++ +I N + LIR GR++K F P+L+D IL + RM
Sbjct: 728 GYQAQKTENRKQVLVIAATNRVDALDQALIRPGRIDKKVFLHYPDLQDRKAILRLCTARM 787
Query: 216 YEKDGITKDEVGS 228
KD + D + S
Sbjct: 788 PLKDDVDLDVLAS 800
>gi|256821468|ref|YP_003145431.1| AAA ATPase [Kangiella koreensis DSM 16069]
gi|256795007|gb|ACV25663.1| AAA ATPase central domain protein [Kangiella koreensis DSM 16069]
Length = 499
Score = 38.5 bits (88), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 64/144 (44%), Gaps = 25/144 (17%)
Query: 60 GGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMS 119
G +G GKS + + G+ + + G L S+ GE K +RE + A +
Sbjct: 279 GVQGGGKSLAAKAVAGMWGVPLLRLDFGALYSKWHGESEKNLRESLKLAEMMAP-----C 333
Query: 120 CLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIP--II 177
L +++++ G+ N T ++ V+GT++ N++P I+
Sbjct: 334 VLWLDEVEKGISTGDNDGGT--SKRVLGTMLTFMQE----------------NKLPIFIV 375
Query: 178 FTGNDFSTIYAPLIRDGRMEKFYW 201
T ND S + L+R GR+++ ++
Sbjct: 376 ATANDISALPPELVRKGRLDEIFF 399
>gi|123968913|ref|YP_001009771.1| ATPase AAA [Prochlorococcus marinus str. AS9601]
gi|123199023|gb|ABM70664.1| ATPase of the AAA+ family [Prochlorococcus marinus str. AS9601]
Length = 488
Score = 38.5 bits (88), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 40/185 (21%), Positives = 78/185 (42%), Gaps = 26/185 (14%)
Query: 37 RSFEYLQGDYYIAPVFMASLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGE 96
R+F DY + P+ L + G +G GKS + I ++ + + + G L S G
Sbjct: 246 RAFSKEARDYGL-PIPKGVLLV-GAQGTGKSLTAKSISKSWSMPLLKLDVGRLFSSLVGS 303
Query: 97 PGKLIRERYRTASQVVQNQGKMSCLM-INDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDN 155
RT + + + C++ I++ID G G + + +++ L +++
Sbjct: 304 S------EARTRETISRAEAMSPCILWIDEIDKGFGGDARSDGGTSQRVLASLLTWMAEK 357
Query: 156 PTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYW--QPNLEDILNIVH 213
+ V + I T N + A L+R GR ++ ++ PN E+ L+I+
Sbjct: 358 ESAVFV---------------IATANAIDKLPAELLRKGRFDEIFFLDLPNSEERLSILD 402
Query: 214 RMYEK 218
+K
Sbjct: 403 LHLKK 407
>gi|357509251|ref|XP_003624914.1| Cell division control protein-like protein [Medicago truncatula]
gi|355499929|gb|AES81132.1| Cell division control protein-like protein [Medicago truncatula]
Length = 586
Score = 38.5 bits (88), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 74/181 (40%), Gaps = 24/181 (13%)
Query: 39 FEYLQGDYYIAPVFMASLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPG 98
F +L ++ F L ++G G GK+ I + G I+S + S AGE
Sbjct: 66 FGFLTFYFWFCFQFPRGLLLYGPPGTGKTSLVRAIVEECGANLTIISPNTVNSALAGESE 125
Query: 99 KLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNT-QMTVNNQIVVGTLMN----LS 153
+ +RE + AS GK S + I++ID R + ++ V + TLM+ S
Sbjct: 126 RNLREAFSEASSHAA-LGKSSVIFIDEIDGLCPRRDSIRELDVRIASQLCTLMDSNKATS 184
Query: 154 DNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGR--MEKFYWQPNLEDILNI 211
NP V + TNR+ I L R GR +E PN E+ L I
Sbjct: 185 SNPGVVVVAS-------TNRV---------DAIDPALRRYGRFDIETEVTVPNEEERLQI 228
Query: 212 V 212
+
Sbjct: 229 L 229
>gi|296109578|ref|YP_003616527.1| ATPase AAA [methanocaldococcus infernus ME]
gi|295434392|gb|ADG13563.1| AAA ATPase central domain protein [Methanocaldococcus infernus ME]
Length = 369
Score = 38.5 bits (88), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 48/105 (45%), Gaps = 8/105 (7%)
Query: 30 DYRQKVTRSFEYLQGDYYIAPVFMASLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGEL 89
D ++K +YLQ ++ +G G GK+ + +++ A EL
Sbjct: 129 DAKKKCKIIMKYLQNPELFGEWAPKNVLFYGPPGTGKTMMARALATETDSSFIMVKAPEL 188
Query: 90 ESERAGEPGKLIRERYRTASQVVQNQGKMSCLM-INDIDA-GLGR 132
E G+ K+IRE Y+ AS+ C++ I+++DA GL R
Sbjct: 189 IGEHVGDSAKMIRELYKKASE------SAPCIIFIDELDAIGLSR 227
>gi|15922918|ref|NP_378587.1| cell division control protein [Sulfolobus tokodaii str. 7]
gi|342306740|dbj|BAK54829.1| ATPase [Sulfolobus tokodaii str. 7]
Length = 700
Score = 38.5 bits (88), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 61/150 (40%), Gaps = 17/150 (11%)
Query: 54 ASLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQ 113
+ + ++G G GK+ + G + ++ EL S GE + IRE ++ A
Sbjct: 466 SGILLYGPPGTGKTMLARAVAHESGANFIAINGPELMSMWVGETERAIREVFKKA----- 520
Query: 114 NQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNR 173
Q + + ++IDA G V ++IV L + R RE +
Sbjct: 521 RQSSPTIIFFDEIDAIAVARGADPNKVTDRIVSQLLTEMDGISKR-------RE-----K 568
Query: 174 IPIIFTGNDFSTIYAPLIRDGRMEKFYWQP 203
+ II N I L+R GR+EK + P
Sbjct: 569 VVIIAATNRPDIIDPALLRPGRLEKLIYVP 598
>gi|254526168|ref|ZP_05138220.1| ATPase [Prochlorococcus marinus str. MIT 9202]
gi|221537592|gb|EEE40045.1| ATPase [Prochlorococcus marinus str. MIT 9202]
Length = 488
Score = 38.5 bits (88), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 40/185 (21%), Positives = 78/185 (42%), Gaps = 26/185 (14%)
Query: 37 RSFEYLQGDYYIAPVFMASLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGE 96
R+F DY + P+ L + G +G GKS + I ++ + + + G L S G
Sbjct: 246 RAFSKEARDYGL-PIPKGVLLV-GAQGTGKSLTAKSISKSWSMPLLRLDVGRLFSSLVGS 303
Query: 97 PGKLIRERYRTASQVVQNQGKMSCLM-INDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDN 155
RT + + + C++ I++ID G G + + +++ L +++
Sbjct: 304 S------EARTRETISRAEAMSPCILWIDEIDKGFGGDARSDGGTSQRVLASLLTWMAEK 357
Query: 156 PTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYW--QPNLEDILNIVH 213
+ V + I T N + A L+R GR ++ ++ PN E+ L+I+
Sbjct: 358 ESAVFV---------------IATANAIDKLPAELLRKGRFDEIFFLDLPNSEERLSILD 402
Query: 214 RMYEK 218
+K
Sbjct: 403 LHLKK 407
>gi|361131042|gb|EHL02772.1| putative 26S protease regulatory subunit 6B like protein [Glarea
lozoyensis 74030]
Length = 269
Score = 38.5 bits (88), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 32/154 (20%), Positives = 67/154 (43%), Gaps = 19/154 (12%)
Query: 56 LCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQ 115
+ ++G G GK+ + + + + + E + GE +++R+ +R A +
Sbjct: 50 VLLYGPPGTGKTMLVKAVANSTTASFIRVVGSEFVQKYLGEGPRMVRDVFRMA-----RE 104
Query: 116 GKMSCLMINDIDAGLGRFGNTQMTVNNQI--VVGTLMNLSDNPTRVSIGQDWRESDITNR 173
S + I++IDA + + Q + ++ ++ L+N D D T+
Sbjct: 105 NSPSIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDG------------FDQTSN 152
Query: 174 IPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLED 207
+ +I N T+ L+R GR+++ PNL D
Sbjct: 153 VKVIMATNRADTLDPALLRPGRLDRKIEFPNLRD 186
>gi|157413736|ref|YP_001484602.1| AAA family ATPase [Prochlorococcus marinus str. MIT 9215]
gi|157388311|gb|ABV51016.1| ATPase of the AAA+ family [Prochlorococcus marinus str. MIT 9215]
Length = 488
Score = 38.5 bits (88), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 40/185 (21%), Positives = 78/185 (42%), Gaps = 26/185 (14%)
Query: 37 RSFEYLQGDYYIAPVFMASLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGE 96
R+F DY + P+ L + G +G GKS + I ++ + + + G L S G
Sbjct: 246 RAFSKEARDYGL-PIPKGVLLV-GAQGTGKSLTAKSISKSWSMPLLRLDVGRLFSSLVGS 303
Query: 97 PGKLIRERYRTASQVVQNQGKMSCLM-INDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDN 155
RT + + + C++ I++ID G G + + +++ L +++
Sbjct: 304 S------EARTRETISRAEAMSPCILWIDEIDKGFGGDARSDGGTSQRVLASLLTWMAEK 357
Query: 156 PTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYW--QPNLEDILNIVH 213
+ V + I T N + A L+R GR ++ ++ PN E+ L+I+
Sbjct: 358 ESAVFV---------------IATANAIDKLPAELLRKGRFDEIFFLDLPNSEERLSILD 402
Query: 214 RMYEK 218
+K
Sbjct: 403 LHLKK 407
>gi|403225149|gb|AFR24761.1| ATPase AAA family [uncultured Pelagomonas]
Length = 493
Score = 38.1 bits (87), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 42/195 (21%), Positives = 81/195 (41%), Gaps = 32/195 (16%)
Query: 56 LCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQ 115
L + G +G GKS + I + + + G L + GE +RE R A +
Sbjct: 262 LLLVGVQGTGKSLTAKAIAHDWQLPLLRLDFGRLFAGIVGESESRVREMIRVA------E 315
Query: 116 GKMSCLM-INDIDAGLGRF-GNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNR 173
C++ I++ID + G N+++ L LS+ T++
Sbjct: 316 ALSPCIVWIDEIDKSFNQSEGKGDSGTTNRVLATFLTWLSEK---------------TSQ 360
Query: 174 IPIIFTGNDFSTIYAPLIRDGRMEKFYW-----QPNLEDILNIVHRMYEKDGITKDEVGS 228
+ ++ T N+F + LIR GR ++ ++ + + I ++ D + ++ S
Sbjct: 361 VFVVATANNFEVLPLELIRKGRFDEIFFVGLPVESERKQIFEVLLSQLRPDSVQNYDLQS 420
Query: 229 IVKTFPNQALDFYGA 243
+ K +A+DF GA
Sbjct: 421 LSK----KAIDFSGA 431
>gi|331085585|ref|ZP_08334669.1| hypothetical protein HMPREF0987_00972 [Lachnospiraceae bacterium
9_1_43BFAA]
gi|330407472|gb|EGG86974.1| hypothetical protein HMPREF0987_00972 [Lachnospiraceae bacterium
9_1_43BFAA]
Length = 543
Score = 38.1 bits (87), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 50/106 (47%), Gaps = 7/106 (6%)
Query: 219 DGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKE 278
+G+ D IV+TFP L+F LR + ++ G V +G KL ++K +
Sbjct: 388 EGMISDFEQKIVETFPKMELEF-AVLREGKKMSELKSSVETCGKVMKMGKKLCPKKKIWD 446
Query: 279 LPVFTP------PEKTVEALLESGYSLLREQQLIMETKLSKEYMKN 318
+ P PEK +E +L ++++++ + + K Y++N
Sbjct: 447 YEMIGPFAWLQIPEKELEQMLSEYLDMMKDEKNVELLRTLKVYLEN 492
>gi|344234531|gb|EGV66399.1| 26S proteasome subunit P45 [Candida tenuis ATCC 10573]
Length = 416
Score = 38.1 bits (87), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 37/171 (21%), Positives = 75/171 (43%), Gaps = 25/171 (14%)
Query: 43 QGDYY----IAPVFMASLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPG 98
QGD Y I P + ++G G GK+ + + + + ++ E + GE
Sbjct: 182 QGDLYTQIGIDPP--RGVLLYGPPGTGKTMLVKAVANSSTASFIRINGSEFVQKYLGEGP 239
Query: 99 KLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQI--VVGTLMNLSDNP 156
+++R+ +R A + + + I++IDA + + Q + ++ ++ L+N D
Sbjct: 240 RMVRDVFRLA-----RENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDG- 293
Query: 157 TRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLED 207
D T+ + +I N T+ L+R GR+++ PNL+D
Sbjct: 294 -----------FDQTSTVKVIMATNRADTLDPALLRPGRLDRKIEFPNLKD 333
>gi|397671724|ref|YP_006513259.1| AAA ATPase [Propionibacterium propionicum F0230a]
gi|395141804|gb|AFN45911.1| ATPase, AAA family [Propionibacterium propionicum F0230a]
Length = 514
Score = 38.1 bits (87), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 70/164 (42%), Gaps = 31/164 (18%)
Query: 60 GGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMS 119
G G GKS + I G+ + + G+ +RE TA +V
Sbjct: 273 GVPGCGKSLSAKAIASQWGLPLYRLDMASVLGMYVGQSEGRLREALATAERVAP-----C 327
Query: 120 CLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQD--WRESDITNRIPII 177
L I++I+ GL + + GT TR IGQ W + ++T ++ ++
Sbjct: 328 VLWIDEIEKGLAQGSDG----------GT--------TRRLIGQFLFWMQ-ELTAKVFMV 368
Query: 178 FTGNDFSTIYAPLIRDGRMEKFYW-----QPNLEDILNIVHRMY 216
T ND ST+ L+R GR ++ ++ P+ E+I+ + R Y
Sbjct: 369 ATANDVSTLPPELLRKGRFDELFFVDLPEAPDREEIIGLYFRKY 412
>gi|167525423|ref|XP_001747046.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163774341|gb|EDQ87970.1| predicted protein [Monosiga brevicollis MX1]
Length = 508
Score = 38.1 bits (87), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 66/146 (45%), Gaps = 15/146 (10%)
Query: 56 LCIWGGKGQGKSFQTELIFQAM-GIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQN 114
+ ++G G GK+ I Q + G EP I++ E+ S+ GE IR + A +
Sbjct: 54 ILLYGPPGTGKTLMARKIGQMLEGREPKIVNGPEVLSKYVGEAEANIRALFEDAETEYKQ 113
Query: 115 QGKMSCLMI---NDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDIT 171
+G+MS L I ++IDA T+ TVNN GT +N S +S D
Sbjct: 114 KGEMSSLHIIIFDEIDA----ICKTRGTVNN----GTGVNDSIVNQLLS---KIDGVDSL 162
Query: 172 NRIPIIFTGNDFSTIYAPLIRDGRME 197
N I +I N I L R GR+E
Sbjct: 163 NNILLIGMTNRPDMIDDALTRPGRLE 188
>gi|320590385|gb|EFX02828.1| aaa family ATPase [Grosmannia clavigera kw1407]
Length = 752
Score = 38.1 bits (87), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 33/151 (21%), Positives = 65/151 (43%), Gaps = 23/151 (15%)
Query: 58 IWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGK 117
++G G K+ + + G+ + GEL ++ GE + IRE + A +
Sbjct: 518 LYGPPGCSKTMTAQALATESGLNYFSVKGGELLNQYVGESERGIRELFERAKRAAP---- 573
Query: 118 MSCLMINDIDAGLGR---FGNTQMTVNN--QIVVGTLMNLSDNPTRVSIGQDWRESDITN 172
+ + +++IDA GR FG+ + N Q+V L L T +
Sbjct: 574 -AVIFLDEIDAVAGRRSDFGDKSASSNRGPQVVPALLSELDGFET-------------LS 619
Query: 173 RIPIIFTGNDFSTIYAPLIRDGRMEKFYWQP 203
++ ++ N ++ L+R GR+E+ ++ P
Sbjct: 620 KVFVVAATNRPESLDPALLRPGRLERHFYVP 650
>gi|440299581|gb|ELP92133.1| atpase AAA family protein, partial [Entamoeba invadens IP1]
Length = 590
Score = 37.7 bits (86), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 75/171 (43%), Gaps = 19/171 (11%)
Query: 56 LCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQ 115
+ + G G GK+ E I +G+ + +SA EL +GE + IR+ + A+++
Sbjct: 48 ILLHGPPGCGKTLLAEAIAGEVGVPFIEVSATELVGGVSGESEQKIRDLFDDAAKLAP-- 105
Query: 116 GKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIP 175
S L I++ID+ + + N+Q + +IV L ++ + S +
Sbjct: 106 ---SLLFIDEIDSIVQKRDNSQREMEKRIVAQLLSSMD------------KLSTADKPVM 150
Query: 176 IIFTGNDFSTIYAPLIRDGRMEK--FYWQPNLEDILNIVHRMYEKDGITKD 224
+I N ++ L R GR +K P+ E IV +M E I +D
Sbjct: 151 VIGATNRPDSLDPALRRAGRFDKEIALGIPSEEQRRQIVTKMIENLKIAED 201
>gi|91069869|gb|ABE10800.1| AAA ATPase superfamily [uncultured Prochlorococcus marinus clone
ASNC1363]
Length = 488
Score = 37.7 bits (86), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 34/162 (20%), Positives = 69/162 (42%), Gaps = 24/162 (14%)
Query: 60 GGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMS 119
G +G GKS + I ++ + + + G L S G RT +++ +
Sbjct: 267 GAQGTGKSLTAKSISKSWSMPLLRLDVGRLFSSLVGSS------EARTREAILRAEAMSP 320
Query: 120 CLM-INDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIF 178
C++ I++ID G G + + +++ L +++ + V + I
Sbjct: 321 CILWIDEIDKGFGGDARSDGGTSQRVLASLLTWMAEKESAVFV---------------IA 365
Query: 179 TGNDFSTIYAPLIRDGRMEKFYW--QPNLEDILNIVHRMYEK 218
T N + A L+R GR ++ ++ PN E+ L+I+ +K
Sbjct: 366 TANAIDKLPAELLRKGRFDEIFFLDLPNSEERLSILELHLKK 407
>gi|296412774|ref|XP_002836095.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295629900|emb|CAZ80252.1| unnamed protein product [Tuber melanosporum]
Length = 648
Score = 37.7 bits (86), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 49/97 (50%), Gaps = 7/97 (7%)
Query: 59 WGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKM 118
G G GK+ +I + +G + +SA + S +GE K +RE + A + K
Sbjct: 132 HGPPGCGKTMLANIIAEEVGRPFIAISAPSIVSGMSGESEKRLRELFEEARE------KA 185
Query: 119 SCLM-INDIDAGLGRFGNTQMTVNNQIVVGTLMNLSD 154
CLM I++IDA + + NT+ ++ ++V L + D
Sbjct: 186 PCLMFIDEIDAIMLKRDNTERGMDRRLVAQMLTCMDD 222
>gi|78779671|ref|YP_397783.1| ATPase [Prochlorococcus marinus str. MIT 9312]
gi|78713170|gb|ABB50347.1| ATPase [Prochlorococcus marinus str. MIT 9312]
Length = 488
Score = 37.7 bits (86), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 40/185 (21%), Positives = 77/185 (41%), Gaps = 26/185 (14%)
Query: 37 RSFEYLQGDYYIAPVFMASLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGE 96
R+F DY + P+ L + G +G GKS + I + + + + G L S G
Sbjct: 246 RAFSKEARDYGL-PIPKGVLLV-GAQGTGKSLTAKSISNSWSMPLLRLDVGRLFSSLVGS 303
Query: 97 PGKLIRERYRTASQVVQNQGKMSCLM-INDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDN 155
RT + + + C++ I++ID G G + + +++ L +++
Sbjct: 304 S------EARTRETISRAEAMSPCILWIDEIDKGFGGDARSDGGTSQRVLASLLTWMAEK 357
Query: 156 PTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYW--QPNLEDILNIVH 213
+ V + I T N + A L+R GR ++ ++ PN E+ L+I+
Sbjct: 358 ESAVFV---------------IATANAIDKLPAELLRKGRFDEIFFLDLPNSEERLSILD 402
Query: 214 RMYEK 218
+K
Sbjct: 403 LHLKK 407
>gi|340053140|emb|CCC47427.1| putative peroxisome biogenesis factor 1 [Trypanosoma vivax Y486]
Length = 906
Score = 37.7 bits (86), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 41/183 (22%), Positives = 77/183 (42%), Gaps = 24/183 (13%)
Query: 58 IWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGK 117
++G G GK+F E I A G+ ++++ E+ + G+ + IRE + A Q
Sbjct: 617 LYGASGCGKTFMVEAIVNAEGLNCIVVNGPEVFGKYIGQSEQKIREVFERA------QAA 670
Query: 118 MSC-LMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPI 176
C L ++ D+ + G V +++V L L G + R+ + +
Sbjct: 671 APCVLFFDEFDSVAPQRGVDNSGVTDRVVNQLLCYLD--------GVEARKD-----VYV 717
Query: 177 IFTGNDFSTIYAPLIRDGRMEKFYWQ--PNLEDILNIVHRMYEK--DGITKDEVGSIVKT 232
+ + I A L+R GR+++ P+ D + + + K +TK E+ I
Sbjct: 718 VAASSRPDLIDAALLRPGRLDRAVQCPIPSHRDRVEFLDTAFGKLRAALTKSEIEEIASK 777
Query: 233 FPN 235
PN
Sbjct: 778 TPN 780
>gi|383830124|ref|ZP_09985213.1| AAA+ family ATPase [Saccharomonospora xinjiangensis XJ-54]
gi|383462777|gb|EID54867.1| AAA+ family ATPase [Saccharomonospora xinjiangensis XJ-54]
Length = 747
Score = 37.4 bits (85), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 65/152 (42%), Gaps = 25/152 (16%)
Query: 56 LCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQ 115
+ I+G G GK+F + + + EL + GE + +RE +R A++
Sbjct: 524 VLIYGPPGNGKTFLVRALAGTGALNVFSVKGAELMDKWVGESERAVRELFRKAAEAAP-- 581
Query: 116 GKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSD--NPTR--VSIGQDWRESDIT 171
S + ++++DA + R G + + + VV L+ D P R V +G T
Sbjct: 582 ---SLIFLDEVDALVPRRGQSSDSGASDRVVAALLTELDGVEPLRDVVVVGA-------T 631
Query: 172 NRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQP 203
NR ++ L+R GR+E+ + P
Sbjct: 632 NRPELVDPA---------LLRPGRLERLIYVP 654
>gi|167382107|ref|XP_001735975.1| hypothetical protein [Entamoeba dispar SAW760]
gi|165901776|gb|EDR27788.1| hypothetical protein, conserved [Entamoeba dispar SAW760]
Length = 622
Score = 37.4 bits (85), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 48/97 (49%), Gaps = 5/97 (5%)
Query: 56 LCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQ 115
+ + G G GK+ + I +G+ + +SA EL +GE IR+ +++ASQ
Sbjct: 78 ILLHGPPGCGKTLLAKAIAGEVGVAFIEVSATELVGGMSGESESKIRDLFQSASQRAP-- 135
Query: 116 GKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNL 152
+ L I++IDA + N Q + +IV L +L
Sbjct: 136 ---ALLFIDEIDAITPKRDNAQREMERRIVAQLLSSL 169
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.319 0.138 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,105,295,291
Number of Sequences: 23463169
Number of extensions: 221651745
Number of successful extensions: 516226
Number of sequences better than 100.0: 401
Number of HSP's better than 100.0 without gapping: 279
Number of HSP's successfully gapped in prelim test: 122
Number of HSP's that attempted gapping in prelim test: 514905
Number of HSP's gapped (non-prelim): 442
length of query: 321
length of database: 8,064,228,071
effective HSP length: 142
effective length of query: 179
effective length of database: 9,027,425,369
effective search space: 1615909141051
effective search space used: 1615909141051
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 77 (34.3 bits)