BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020787
(321 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3T15|A Chain A, Structure Of Green-Type Rubisco Activase From Tobacco
pdb|3ZW6|A Chain A, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|B Chain B, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|C Chain C, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|D Chain D, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|E Chain E, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|F Chain F, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco
Length = 293
Score = 277 bits (708), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 142/288 (49%), Positives = 188/288 (65%), Gaps = 26/288 (9%)
Query: 46 YYIAPVFMASLC--------------------IWGGKGQGKSFQTELIFQAMGIEPVIMS 85
+YIAP FM L IWGGKGQGKSFQ EL+F+ MGI P++MS
Sbjct: 9 FYIAPAFMDKLVVHITKNFLKLPNIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMS 68
Query: 86 AGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQI 144
AGELES AGEP KLIR+RYR A+++++ +G M CL IND+DAG GR G TQ TVNNQ+
Sbjct: 69 AGELESGNAGEPAKLIRQRYREAAEIIR-KGNMCCLFINDLDAGAGRMGGTTQYTVNNQM 127
Query: 145 VVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPN 204
V TLMN++DNPT V + + + + R+PII TGNDFST+YAPLIRDGRMEKFYW P
Sbjct: 128 VNATLMNIADNPTNVQLPGMYNKQE-NARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT 186
Query: 205 LEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVE 264
ED + + ++ D + ++V IV FP Q++DF+GALR+R YD + KW+ G+E
Sbjct: 187 REDRIGVCTGIFRTDNVPAEDVVKIVDNFPGQSIDFFGALRARVYDDEVRKWVSGT-GIE 245
Query: 265 NLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLS 312
+G+KLL P F P+ T+E LLE G L++EQ+ + +L+
Sbjct: 246 KIGDKLLNSFDGP--PTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLA 291
>pdb|3THG|A Chain A, Crystal Structure Of The Creosote Rubisco Activase
C-Domain
Length = 107
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 62/99 (62%), Gaps = 3/99 (3%)
Query: 206 EDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVEN 265
ED + + ++ D + D++ +V TFP Q++DF+GALR+R YD + KW+ ++ GV+
Sbjct: 8 EDRIGVCKGIFRTDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWVSEV-GVDT 66
Query: 266 LGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQ 304
+G KL+ ++ P F P+ T++ LL G L++EQ+
Sbjct: 67 IGKKLVNSKEGP--PSFEQPKMTIDKLLGYGGMLVQEQE 103
>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer
Length = 331
Score = 31.6 bits (70), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 22/100 (22%), Positives = 48/100 (48%), Gaps = 5/100 (5%)
Query: 54 ASLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQ 113
+ + ++G G GKS+ + + +S+ +L S+ GE KL+++ + A
Sbjct: 61 SGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMA----- 115
Query: 114 NQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLS 153
+ K S + I+++DA G G + + +I L+ ++
Sbjct: 116 RENKPSIIFIDEVDALTGTRGEGESEASRRIKTELLVQMN 155
>pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound
State
Length = 322
Score = 31.2 bits (69), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 22/100 (22%), Positives = 47/100 (47%), Gaps = 5/100 (5%)
Query: 54 ASLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQ 113
+ + ++G G GKS+ + + +S+ +L S+ GE KL+++ + A
Sbjct: 52 SGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMA----- 106
Query: 114 NQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLS 153
+ K S + I+ +DA G G + + +I L+ ++
Sbjct: 107 RENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMN 146
>pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
Length = 340
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/100 (22%), Positives = 47/100 (47%), Gaps = 5/100 (5%)
Query: 54 ASLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQ 113
+ + ++G G GKS+ + + +S+ +L S+ GE KL+++ + A
Sbjct: 70 SGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMA----- 124
Query: 114 NQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLS 153
+ K S + I+ +DA G G + + +I L+ ++
Sbjct: 125 RENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMN 164
>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 467
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 77/167 (46%), Gaps = 22/167 (13%)
Query: 56 LCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQ 115
+ ++G G GK+ + + + EL + GE +++RE + A +
Sbjct: 246 ILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRELFEMA------R 299
Query: 116 GKMSCLM-INDIDA-GLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNR 173
K +C++ ++IDA G RF + N V T++ L T++ G D R
Sbjct: 300 TKKACIIFFDEIDAVGGARFDDGAGGDNE--VQRTMLELI---TQLD-GFDPR-----GN 348
Query: 174 IPIIFTGNDFSTIYAPLIRDGRMEKF--YWQPNLEDILNIVHRMYEK 218
I ++F N +T+ L+R GR+++ + P+LE NI R++ K
Sbjct: 349 IKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANI-FRIHSK 394
>pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4
pdb|2QPA|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
Length = 355
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/100 (22%), Positives = 47/100 (47%), Gaps = 5/100 (5%)
Query: 54 ASLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQ 113
+ + ++G G GKS+ + + +S+ +L S+ GE KL+++ + A
Sbjct: 85 SGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMA----- 139
Query: 114 NQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLS 153
+ K S + I+ +DA G G + + +I L+ ++
Sbjct: 140 RENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMN 179
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/154 (17%), Positives = 66/154 (42%), Gaps = 19/154 (12%)
Query: 56 LCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQ 115
+ ++G G GK+ + + + + ++ E + GE +++R+ +R A +
Sbjct: 209 VLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLA-----RE 263
Query: 116 GKMSCLMINDIDAGLGRFGNTQMTVNNQI--VVGTLMNLSDNPTRVSIGQDWRESDITNR 173
S + I+++D+ + + Q + ++ ++ L+ D D +
Sbjct: 264 NAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDG------------FDQSTN 311
Query: 174 IPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLED 207
+ +I N T+ L+R GR+++ P+L D
Sbjct: 312 VKVIMATNRADTLDPALLRPGRLDRKIEFPSLRD 345
>pdb|3M6A|A Chain A, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|B Chain B, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|C Chain C, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|D Chain D, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|E Chain E, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|F Chain F, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
Length = 543
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 73/173 (42%), Gaps = 30/173 (17%)
Query: 37 RSFEYLQGDYYIAPVFMASLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGEL--ESERA 94
R EYL + LC+ G G GK+ + I +++G + V +S G + ESE
Sbjct: 92 RILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIR 151
Query: 95 GE--------PGKLIRERYRTASQVVQNQGKMS-CLMINDIDAGLGRFGNTQMTVNNQIV 145
G PG++I Q ++ GK++ ++++ID F +
Sbjct: 152 GHRRTYVGAMPGRII--------QGMKKAGKLNPVFLLDEIDKMSSDFRGDPSSA----- 198
Query: 146 VGTLMNLSDNPTRVSIGQDWRESDI-TNRIPIIFTGNDFSTIYAPLIRDGRME 197
++ + D S + E +++ I T N+ +TI PL RD RME
Sbjct: 199 ---MLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANNLATIPGPL-RD-RME 246
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 29/144 (20%), Positives = 62/144 (43%), Gaps = 17/144 (11%)
Query: 56 LCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQ 115
+ ++G G GK+ + + +G + A + + GE ++IRE + A +
Sbjct: 218 VLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYAKE----- 272
Query: 116 GKMSCLM-INDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRI 174
C++ ++++DA GR + + + +I + L+ ++GQ
Sbjct: 273 -HEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQ----------T 321
Query: 175 PIIFTGNDFSTIYAPLIRDGRMEK 198
II N T+ L+R GR+++
Sbjct: 322 KIIMATNRPDTLDPALLRPGRLDR 345
>pdb|3TL2|A Chain A, Crystal Structure Of Bacillus Anthracis Str. Ames Malate
Dehydrogenase In Closed Conformation
Length = 315
Score = 28.1 bits (61), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 12/49 (24%), Positives = 27/49 (55%)
Query: 25 SDIVFDYRQKVTRSFEYLQGDYYIAPVFMASLCIWGGKGQGKSFQTELI 73
++ + +++V + YL+G+Y + +++ I GG G K + EL+
Sbjct: 245 TEAILKDQRRVLPAIAYLEGEYGYSDLYLGVPVILGGNGIEKIIELELL 293
>pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
pdb|3D8B|B Chain B, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
Length = 357
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 45/97 (46%), Gaps = 5/97 (5%)
Query: 56 LCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQ 115
+ ++G G GK+ + I G +SA L S+ GE K++R + V
Sbjct: 120 ILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVGEGEKMVRALF-----AVARC 174
Query: 116 GKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNL 152
+ + + I++ID+ L + G+ + + +I L+ L
Sbjct: 175 QQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQL 211
>pdb|3U44|A Chain A, Crystal Structure Of Addab-Dna Complex
pdb|3U4Q|A Chain A, Structure Of Addab-Dna Complex At 2.8 Angstroms
Length = 1232
Score = 27.7 bits (60), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 20/27 (74%)
Query: 203 PNLEDILNIVHRMYEKDGITKDEVGSI 229
P++E+ VHR+YEK+ +T+++ +I
Sbjct: 1077 PSIEEAEQTVHRLYEKELLTEEQKDAI 1103
>pdb|3Q6K|A Chain A, Salivary Protein From Lutzomyia Longipalpis
pdb|3Q6K|B Chain B, Salivary Protein From Lutzomyia Longipalpis
pdb|3Q6T|A Chain A, Salivary Protein From Lutzomyia Longipalpis, Ligand Free
pdb|3Q6T|B Chain B, Salivary Protein From Lutzomyia Longipalpis, Ligand Free
Length = 381
Score = 27.7 bits (60), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 25/44 (56%)
Query: 152 LSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGR 195
L++ T+ S+G + S + N+ TG + ++IY P+I D R
Sbjct: 55 LAEVDTKNSLGVKGKHSPLLNKFSGHKTGKELTSIYQPVIDDCR 98
>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 27.7 bits (60), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 65/154 (42%), Gaps = 21/154 (13%)
Query: 56 LCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQ 115
+ ++G G GK+ + + + + EL + G+ +L R+ ++ A +
Sbjct: 219 VILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRLCRQIFKVA-----GE 273
Query: 116 GKMSCLMINDIDA-GLGRF-GNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNR 173
S + I++IDA G R+ N+ Q + L+N D G D R
Sbjct: 274 NAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLD-------GFDDR-----GD 321
Query: 174 IPIIFTGNDFSTIYAPLIRDGRMEK--FYWQPNL 205
+ +I N T+ LIR GR+++ + P+L
Sbjct: 322 VKVIMATNKIETLDPALIRPGRIDRKILFENPDL 355
>pdb|3Q6P|A Chain A, Salivary Protein From Lutzomyia Longipalpis.
Selenomethionine Derivative
pdb|3Q6P|B Chain B, Salivary Protein From Lutzomyia Longipalpis.
Selenomethionine Derivative
Length = 381
Score = 27.7 bits (60), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 25/44 (56%)
Query: 152 LSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGR 195
L++ T+ S+G + S + N+ TG + ++IY P+I D R
Sbjct: 55 LAEVDTKNSLGVKGKHSPLLNKFSGHKTGKELTSIYQPVIDDCR 98
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.138 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,717,845
Number of Sequences: 62578
Number of extensions: 423462
Number of successful extensions: 1009
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 997
Number of HSP's gapped (non-prelim): 20
length of query: 321
length of database: 14,973,337
effective HSP length: 99
effective length of query: 222
effective length of database: 8,778,115
effective search space: 1948741530
effective search space used: 1948741530
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)