BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020787
(321 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P93431|RCA_ORYSJ Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic
OS=Oryza sativa subsp. japonica GN=RCA PE=1 SV=2
Length = 466
Score = 297 bits (760), Expect = 9e-80, Method: Compositional matrix adjust.
Identities = 148/302 (49%), Positives = 200/302 (66%), Gaps = 26/302 (8%)
Query: 36 TRSFEYLQGDYYIAPVFMASLC--------------------IWGGKGQGKSFQTELIFQ 75
T F+ G +YIAP FM L IWGGKGQGKSFQ EL+F
Sbjct: 112 TYDFDNTMGGFYIAPAFMDKLVVHISKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFA 171
Query: 76 AMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG- 134
MGI P++MSAGELES AGEP KLIR+RYR A+ +++ +GKM CL IND+DAG GR G
Sbjct: 172 KMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGG 230
Query: 135 NTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDG 194
TQ TVNNQ+V TLMN++DNPT V + + + D R+PII TGNDFST+YAPLIRDG
Sbjct: 231 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKED-NPRVPIIVTGNDFSTLYAPLIRDG 289
Query: 195 RMEKFYWQPNLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSIS 254
RMEKFYW P +D + + ++ D + +++ IV +FP Q++DF+GALR+R YD +
Sbjct: 290 RMEKFYWAPTRDDRVGVCKGIFRTDNVPDEDIVKIVDSFPGQSIDFFGALRARVYDDEVR 349
Query: 255 KWIDDIGGVENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKE 314
KW+ D GVEN+G +L+ R+ P F P+ T+E L+E GY L++EQ+ + +L+++
Sbjct: 350 KWVSDT-GVENIGKRLVNSREGP--PEFEQPKMTIEKLMEYGYMLVKEQENVKRVQLAEQ 406
Query: 315 YM 316
Y+
Sbjct: 407 YL 408
>sp|Q9ZT00|RCA_MAIZE Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic
OS=Zea mays GN=RCA1 PE=2 SV=3
Length = 433
Score = 292 bits (747), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 154/334 (46%), Positives = 213/334 (63%), Gaps = 33/334 (9%)
Query: 10 GVIDPLFAGNFLGKDSDIV----FDYRQKVTRSFEY--LQGDYYIAPVFMASLC------ 57
G++D LF +G + + +DY + +S+ + + +YIA FM L
Sbjct: 86 GLVDNLFQAP-MGDGTHVAVLSSYDYISQGQKSYNFDNMMDGFYIAKGFMDKLVVHLSKN 144
Query: 58 --------------IWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRE 103
IWGGKGQGKSFQ EL+F MGI P++MSAGELES AGEP KLIR+
Sbjct: 145 FMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGITPIMMSAGELESGNAGEPAKLIRQ 204
Query: 104 RYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIG 162
RYR AS +++ +GKMSCL IND+DAG GR G TQ TVNNQ+V TLMN++DNPT V +
Sbjct: 205 RYREASDLIK-KGKMSCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLP 263
Query: 163 QDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGIT 222
+ + D R+PII TGNDFST+YAPLIRDGRMEKFYW P ED + + ++ DG+
Sbjct: 264 GMYNKED-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDGVD 322
Query: 223 KDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVF 282
++ V +V TFP Q++DF+GALR+R YD + +W+ + GVEN+ KL+ ++ P F
Sbjct: 323 EEHVVQLVDTFPGQSIDFFGALRARVYDDEVRRWVSET-GVENIARKLVNSKEGP--PTF 379
Query: 283 TPPEKTVEALLESGYSLLREQQLIMETKLSKEYM 316
P+ T+E LLE G+ L+ EQ+ + +L+ +Y+
Sbjct: 380 EQPKITIEKLLEYGHMLVAEQENVKRVQLADKYL 413
>sp|O49074|RCA_SOLPN Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic
OS=Solanum pennellii PE=2 SV=1
Length = 459
Score = 290 bits (741), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 151/334 (45%), Positives = 209/334 (62%), Gaps = 31/334 (9%)
Query: 10 GVIDPLFAGNFLGKDSDIVFDYRQKVTRSFEYLQGD-----YYIAPVFMASLCI------ 58
G++D LF + + + V+++ + Q D +YIAP FM L +
Sbjct: 89 GLVDSLFQAPTGTGTHHAIMNSYEYVSQALKTYQLDNKLDGFYIAPAFMDKLVVHITKNF 148
Query: 59 --------------WGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRER 104
WGGKGQGKSFQ EL+F+ MGI P++MSAGELES AGEP KLIR+R
Sbjct: 149 LTLPNIKVPLILGVWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQR 208
Query: 105 YRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIGQ 163
YR A+++++ +G M CL IND+DAG GR G TQ TVNNQ+V TLMN++DNPT V +
Sbjct: 209 YREAAEIIR-KGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPG 267
Query: 164 DWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITK 223
+ + + R+PII TGNDFST+YAPLIRDGRMEKFYW P ED + + ++ D + +
Sbjct: 268 MYNKQE-NARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDNVPE 326
Query: 224 DEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVFT 283
+ V IV +FP Q++DF+GALR+R YD + KW+ G+E +G KLL R P F
Sbjct: 327 EAVVKIVDSFPGQSIDFFGALRARVYDDEVRKWVSGT-GIELIGEKLLNSRDGP--PTFE 383
Query: 284 PPEKTVEALLESGYSLLREQQLIMETKLSKEYMK 317
P+ T+E LLE G L++EQ+ + +L++ Y+K
Sbjct: 384 QPKMTLEKLLEYGNMLVQEQENVKRVQLAETYLK 417
>sp|Q40073|RCAA_HORVU Ribulose bisphosphate carboxylase/oxygenase activase A,
chloroplastic OS=Hordeum vulgare GN=RCAA PE=2 SV=1
Length = 464
Score = 288 bits (738), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 153/334 (45%), Positives = 208/334 (62%), Gaps = 33/334 (9%)
Query: 10 GVIDPLFAGNFLGKDSDIVFDYRQKVTRS-----FEYLQGDYYIAPVFMASLC------- 57
G++D LF + V + V++ F+ G +YIAP FM L
Sbjct: 80 GIVDSLFQAPTGHGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPAFMDKLVVHLSKNF 139
Query: 58 -------------IWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRER 104
IWGGKGQGKSFQ EL+F MGI P++MSAGELES AGEP KLIR+R
Sbjct: 140 MTLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQR 199
Query: 105 YRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIGQ 163
YR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ+V TLMN++D PT V +
Sbjct: 200 YREAADMIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAPTNVQLPG 258
Query: 164 DWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITK 223
+ + + R+PI+ TGNDFST+YAPLIRDGRMEKFYW P +D + + +++ D ++
Sbjct: 259 MYNKRE-NPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVSD 317
Query: 224 DEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPV-F 282
+ V IV TFP Q++DF+GALR+R YD + KW+ G+EN+G +L+ R + PV F
Sbjct: 318 ESVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVGST-GIENIGKRLVNSR---DGPVTF 373
Query: 283 TPPEKTVEALLESGYSLLREQQLIMETKLSKEYM 316
P+ TVE LLE G+ L++EQ + +L+ YM
Sbjct: 374 EQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYM 407
>sp|P10871|RCA_SPIOL Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic
OS=Spinacia oleracea PE=1 SV=2
Length = 472
Score = 286 bits (733), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 151/337 (44%), Positives = 211/337 (62%), Gaps = 35/337 (10%)
Query: 10 GVIDPLF-----AGNFLGKDSDIVFDYRQKVTRSFEY--LQGDYYIAPVFMASLCI---- 58
G++D LF AG + S F+Y + R ++ + GD+YIAP FM L +
Sbjct: 88 GMVDSLFQAPADAGTHVPIQSS--FEYESQGLRKYDIDNMLGDFYIAPAFMDKLVVHITK 145
Query: 59 ----------------WGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIR 102
WGGKGQGKSFQ EL+F +GI P++MSAGELES AGEP KLIR
Sbjct: 146 NFLNLPNIKIPLILGVWGGKGQGKSFQCELVFAKLGINPIMMSAGELESGNAGEPAKLIR 205
Query: 103 ERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSI 161
+RYR A+ ++ +GKM L IND++ G GR G TQ TVNNQ+V TLMN++DNPT V +
Sbjct: 206 QRYREAADLIA-KGKMCALFINDLEPGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQL 264
Query: 162 GQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGI 221
+ + D R+PII TGNDFST+YAPLIRDGRMEKFYW P ED + + +++ D +
Sbjct: 265 PGMYNKQD-NARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCTGIFKTDKV 323
Query: 222 TKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPV 281
+ V +V FP Q++DF+GALR+R Y + KW++ + GV+N+G KL+ + PV
Sbjct: 324 PAEHVVKLVDAFPGQSIDFFGALRARVYHDEVRKWVNSV-GVDNVGKKLVNSKDGP--PV 380
Query: 282 FTPPEKTVEALLESGYSLLREQQLIMETKLSKEYMKN 318
F PE T++ L+E G L++EQ+ + +L+ +YM +
Sbjct: 381 FEQPEMTLQKLMEYGNMLVQEQENVKRVQLADQYMSS 417
>sp|Q40460|RCA1_TOBAC Ribulose bisphosphate carboxylase/oxygenase activase 1,
chloroplastic OS=Nicotiana tabacum PE=1 SV=1
Length = 442
Score = 285 bits (728), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 150/319 (47%), Positives = 201/319 (63%), Gaps = 38/319 (11%)
Query: 32 RQKVTRSFEYL-QG-----------DYYIAPVFMASLC--------------------IW 59
V +S+EY+ QG +YIAP FM L IW
Sbjct: 109 HHAVLQSYEYVSQGLRQYNLDNKLDGFYIAPAFMDKLVVHITKNFLKLPNIKVPLILGIW 168
Query: 60 GGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMS 119
GGKGQGKSFQ EL+F+ MGI P++MSAGELES AGEP KLIR+RYR A+++++ +G M
Sbjct: 169 GGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIR-KGNMC 227
Query: 120 CLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIF 178
CL IND+DAG GR G TQ TVNNQ+V TLMN++DNPT V + + + + R+PII
Sbjct: 228 CLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQE-NARVPIIV 286
Query: 179 TGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQAL 238
TGNDFST+YAPLIRDGRMEKFYW P ED + + ++ D + ++V IV FP Q++
Sbjct: 287 TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCTGIFRTDNVPAEDVVKIVDNFPGQSI 346
Query: 239 DFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYS 298
DF+GALR+R YD + KW+ G+E +G+KLL P F P+ T+E LLE G
Sbjct: 347 DFFGALRARVYDDEVRKWVSGT-GIEKIGDKLLNSFDGP--PTFEQPKMTIEKLLEYGNM 403
Query: 299 LLREQQLIMETKLSKEYMK 317
L++EQ+ + +L+ +Y+K
Sbjct: 404 LVQEQENVKRVQLADKYLK 422
>sp|O98997|RCA_VIGRR Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic
OS=Vigna radiata var. radiata GN=RCA PE=2 SV=2
Length = 439
Score = 284 bits (726), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 148/333 (44%), Positives = 209/333 (62%), Gaps = 33/333 (9%)
Query: 10 GVIDPLF-----AGNFLGKDSDIVFDYRQKVTRSFEYLQGDYYIAPVFMASLC------- 57
G++DPLF AG S ++Y R + ++ +YIAP F+ L
Sbjct: 94 GMVDPLFQAPMDAGTHYAVMSS--YEYLSTGLRQLDNIKDGFYIAPAFLDKLVVHITKNF 151
Query: 58 -------------IWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRER 104
IWGGKGQGKSFQ EL+F MGI P++MSAGELES AGEP KLIR+R
Sbjct: 152 MTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQR 211
Query: 105 YRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIGQ 163
YR A+ ++ +GKM L IND+DAG GR G TQ TVNNQ+V TLMN++DNPT V +
Sbjct: 212 YREAADLIA-KGKMCALFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPG 270
Query: 164 DWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITK 223
+ + + R+PII TGNDFST+YAPLIRDGRMEKFYW P +D + + ++ DG+ +
Sbjct: 271 MYNKEE-NARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRVGVCKGIFRTDGVPE 329
Query: 224 DEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVFT 283
+++ +V TFP Q++DF+GALR+R YD + KWI + GV+ G KL+ ++ P F
Sbjct: 330 EDITKLVDTFPGQSIDFFGALRARVYDDEVRKWISGV-GVDATGKKLVNSKEGP--PTFD 386
Query: 284 PPEKTVEALLESGYSLLREQQLIMETKLSKEYM 316
P+ +++ LL+ G L++EQ+ + +L+ +Y+
Sbjct: 387 QPKMSLDKLLQYGNMLVQEQENVKRVQLADKYL 419
>sp|Q40565|RCA2_TOBAC Ribulose bisphosphate carboxylase/oxygenase activase 2,
chloroplastic OS=Nicotiana tabacum GN=RCA PE=2 SV=1
Length = 439
Score = 284 bits (726), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 150/319 (47%), Positives = 202/319 (63%), Gaps = 38/319 (11%)
Query: 32 RQKVTRSFEYL-QG-----------DYYIAPVFMASLCI--------------------W 59
V +S+EY+ QG +YIAP FM L + W
Sbjct: 109 HHAVLQSYEYVSQGLRQYNMDNTLDGFYIAPSFMDKLVVHITKNFLKLPNIKVPLILGVW 168
Query: 60 GGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMS 119
GGKGQGKSFQ EL+F+ MGI P++MSAGELES AGEP KLIR+RYR A+++++ +G +
Sbjct: 169 GGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIR-KGNIC 227
Query: 120 CLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIF 178
CL IND+DAG GR G TQ TVNNQ+V TLMN++DNPT V + + + + R+PII
Sbjct: 228 CLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQE-NARVPIIV 286
Query: 179 TGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQAL 238
TGNDFST+YAPLIRDGRMEKFYW P ED + + ++ D + ++ V IV TFP Q++
Sbjct: 287 TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDNVPEEAVIKIVDTFPGQSI 346
Query: 239 DFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYS 298
DF+GALR+R YD + KW+ G+E +G+KLL P F P+ TVE LLE G
Sbjct: 347 DFFGALRARVYDDEVRKWVSGT-GIEAIGDKLLNSFDGP--PTFEQPKMTVEKLLEYGNM 403
Query: 299 LLREQQLIMETKLSKEYMK 317
L++EQ+ + +L++ Y+K
Sbjct: 404 LVQEQENVKRVQLAETYLK 422
>sp|Q7X999|RCA2_LARTR Ribulose bisphosphate carboxylase/oxygenase activase 2,
chloroplastic OS=Larrea tridentata GN=RCA2 PE=2 SV=1
Length = 435
Score = 283 bits (724), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 140/292 (47%), Positives = 193/292 (66%), Gaps = 26/292 (8%)
Query: 46 YYIAPVFMASLC--------------------IWGGKGQGKSFQTELIFQAMGIEPVIMS 85
+YIAP FM L IWGGKGQGKSFQ EL+F MGI P++MS
Sbjct: 131 FYIAPAFMDKLVVHITKNFLSLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 190
Query: 86 AGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQI 144
AGELES AGEP KLIR+RYR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ+
Sbjct: 191 AGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQM 249
Query: 145 VVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPN 204
V TLMN++DNPT V + + + + R+PII TGNDFST+YAPLIRDGRMEKFYW P
Sbjct: 250 VNATLMNIADNPTNVQLPGMYNKEE-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT 308
Query: 205 LEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVE 264
ED + + ++ D + ++++ +V FP Q++DF+GALR+R YD + KW+ ++ GV+
Sbjct: 309 REDRIGVCKGIFRTDNVPEEDIVKVVDQFPGQSIDFFGALRARVYDDEVRKWVSEV-GVD 367
Query: 265 NLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYM 316
+G KL+ ++ P F P+ T++ LL+ G L+ EQ+ + +L+ +YM
Sbjct: 368 TIGKKLVNSKEGP--PTFEQPKMTIDKLLQYGNMLVEEQENVKRVQLADKYM 417
>sp|Q7X9A0|RCA1_LARTR Ribulose bisphosphate carboxylase/oxygenase activase 1,
chloroplastic OS=Larrea tridentata GN=RCA1 PE=1 SV=1
Length = 476
Score = 282 bits (722), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 141/292 (48%), Positives = 192/292 (65%), Gaps = 26/292 (8%)
Query: 46 YYIAPVFMASLC--------------------IWGGKGQGKSFQTELIFQAMGIEPVIMS 85
+YIAP FM L IWGGKGQGKSFQ EL+F MGI P++MS
Sbjct: 131 FYIAPAFMDKLVVHITKNFLSLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 190
Query: 86 AGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQI 144
AGELES AGEP KLIR+RYR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ+
Sbjct: 191 AGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQM 249
Query: 145 VVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPN 204
V TLMN++DNPT V + + + + R+PII TGNDFST+YAPLIRDGRMEKFYW P
Sbjct: 250 VNATLMNIADNPTNVQLPGMYNKEE-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT 308
Query: 205 LEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVE 264
ED + + ++ D + D++ +V TFP Q++DF+GALR+R Y + KW+ ++ GV+
Sbjct: 309 REDRIGVCKGIFRTDNVADDDIVKLVDTFPGQSIDFFGALRARVYHDEVRKWVSEV-GVD 367
Query: 265 NLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYM 316
+G KL+ ++ P F P+ T++ LL G L++EQ+ + +L+ +YM
Sbjct: 368 TIGKKLVNSKEGP--PSFEQPKMTIDKLLGYGGMLVQEQENVKRVQLADKYM 417
>sp|Q40281|RCA_MALDO Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic
OS=Malus domestica GN=RCA PE=2 SV=1
Length = 437
Score = 281 bits (720), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 143/292 (48%), Positives = 193/292 (66%), Gaps = 26/292 (8%)
Query: 46 YYIAPVFMASLC--------------------IWGGKGQGKSFQTELIFQAMGIEPVIMS 85
YYIAP FM L IWGGKGQGKSFQ EL+F M I P++MS
Sbjct: 131 YYIAPAFMDKLVVHITKNFMTLPNMKVPLILGIWGGKGQGKSFQCELVFAKMRISPIMMS 190
Query: 86 AGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQI 144
AGELES AGEP KLIR+RYR A+ +++ +GKM L IND+DAG GR G TQ TVNNQ+
Sbjct: 191 AGELESGNAGEPAKLIRQRYREAADIIR-KGKMCALFINDLDAGAGRLGGTTQYTVNNQM 249
Query: 145 VVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPN 204
V TLMN++DNPT V + + + + R+PII TGNDFST+YAPLIRDGRMEKFYW P
Sbjct: 250 VNATLMNIADNPTNVQLPGMYNKEE-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT 308
Query: 205 LEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVE 264
ED + + ++ D + K+++ +V TFP Q++DF+GALR+R YD + KWI + GV+
Sbjct: 309 REDRIGVCIGIFRSDNVAKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWITGV-GVD 367
Query: 265 NLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYM 316
++G KL+ ++ P F P+ T+E LLE G L++EQ+ + +L+ +Y+
Sbjct: 368 SIGKKLVNSKEGP--PTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADKYL 417
>sp|Q42450|RCAB_HORVU Ribulose bisphosphate carboxylase/oxygenase activase B,
chloroplastic OS=Hordeum vulgare GN=RCAB PE=2 SV=1
Length = 425
Score = 280 bits (717), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 149/333 (44%), Positives = 207/333 (62%), Gaps = 32/333 (9%)
Query: 10 GVIDPLFAGNFLGKDSDIV---FDYRQKVTRSFEY--LQGDYYIAPVFMASLC------- 57
G++D LF + + ++Y + R +++ YIAP FM L
Sbjct: 78 GIVDSLFQAPMGDGTHEAILSSYEYISQGLRKYDFDNTMDGLYIAPAFMDKLIVHLAKNF 137
Query: 58 -------------IWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRER 104
IWGGKGQGKSFQ EL+F MGI P++MSAGELES GEP KLIR+R
Sbjct: 138 MTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGN-GEPAKLIRQR 196
Query: 105 YRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIGQ 163
YR A+ ++ N+GKM CL IND+DAG GR G TQ TVNNQ+V TLMN++D PT V +
Sbjct: 197 YREAADII-NKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAPTNVQLPG 255
Query: 164 DWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITK 223
+ + + R+PII TGNDFST+YAPLIRDGRMEKFYW P ED + + ++ D +
Sbjct: 256 MYNKEE-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDNVPD 314
Query: 224 DEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVFT 283
+ V +V TFP Q++DF+GALR+R YD + KW+ +I GVEN+ +L+ R+ P F
Sbjct: 315 EAVVRLVDTFPGQSIDFFGALRARVYDDEVRKWVGEI-GVENISKRLVNSREGP--PTFD 371
Query: 284 PPEKTVEALLESGYSLLREQQLIMETKLSKEYM 316
P+ T+E L+E G+ L++EQ+ + +L+ +Y+
Sbjct: 372 QPKMTIEKLMEYGHMLVQEQENVKRVQLADKYL 404
>sp|Q01587|RCA_CUCSA Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic
OS=Cucumis sativus PE=2 SV=1
Length = 413
Score = 280 bits (717), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 151/328 (46%), Positives = 201/328 (61%), Gaps = 31/328 (9%)
Query: 10 GVIDPLFAGNFLGKDSDIV---FDYRQKVTRSFEYLQG--DYYIAPVFMASLCI------ 58
G+ DPLF + V ++Y R + Y +YIAP FM L +
Sbjct: 87 GLADPLFQAPMGTGTHNAVLSSYEYISAGLRDYSYDNNVDGFYIAPAFMDKLTVHIVKNF 146
Query: 59 --------------WGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRER 104
WGGKGQGKSFQ EL+F MGI P++MSAGELES AGEP KLIR+R
Sbjct: 147 LTLPNIKVPLILGVWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQR 206
Query: 105 YRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIGQ 163
YR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ+V TLMN++DNPT V +
Sbjct: 207 YREAADIIK-KGKMCCLFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPG 265
Query: 164 DWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITK 223
+ + + R+PII TGNDFST+YAPLIRDGRM+KFYW P ED + I ++ DG+
Sbjct: 266 MYNKEE-NPRVPIIVTGNDFSTLYAPLIRDGRMDKFYWAPTREDRIGICTGIFRTDGVPF 324
Query: 224 DEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVFT 283
+++ +V TFP Q++DF+GALR+R YD + KW + GVE +G L+ ++ P F
Sbjct: 325 EDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWAVGV-GVERIGRNLVNSKESP--PTFD 381
Query: 284 PPEKTVEALLESGYSLLREQQLIMETKL 311
P+ T+E LLE G L+ EQ+ + KL
Sbjct: 382 QPKMTIEKLLEYGNMLVMEQENVKRVKL 409
>sp|P10896|RCA_ARATH Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic
OS=Arabidopsis thaliana GN=RCA PE=1 SV=2
Length = 474
Score = 279 bits (714), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 142/292 (48%), Positives = 192/292 (65%), Gaps = 26/292 (8%)
Query: 46 YYIAPVFMASLC--------------------IWGGKGQGKSFQTELIFQAMGIEPVIMS 85
+YIAP FM L IWGGKGQGKSFQ EL+ MGI P++MS
Sbjct: 131 FYIAPAFMDKLVVHITKNFLTLPNIKVPLILGIWGGKGQGKSFQCELVMAKMGINPIMMS 190
Query: 86 AGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQI 144
AGELES AGEP KLIR+RYR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ+
Sbjct: 191 AGELESGNAGEPAKLIRQRYREAADLIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQM 249
Query: 145 VVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPN 204
V TLMN++DNPT V + + + + R+PII TGNDFST+YAPLIRDGRMEKFYW P
Sbjct: 250 VNATLMNIADNPTNVQLPGMYNKEE-NARVPIICTGNDFSTLYAPLIRDGRMEKFYWAPT 308
Query: 205 LEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVE 264
ED + + ++ D I +++ ++V FP Q++DF+GALR+R YD + K+++ + GVE
Sbjct: 309 REDRIGVCKGIFRTDKIKDEDIVTLVDQFPGQSIDFFGALRARVYDDEVRKFVESL-GVE 367
Query: 265 NLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYM 316
+G +L+ R+ PVF PE T E L+E G L+ EQ+ + +L++ Y+
Sbjct: 368 KIGKRLVNSREGP--PVFEQPEMTYEKLMEYGNMLVMEQENVKRVQLAETYL 417
>sp|O64981|RCA_PHAVU Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic
OS=Phaseolus vulgaris GN=RCA1 PE=2 SV=1
Length = 441
Score = 275 bits (704), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 139/300 (46%), Positives = 195/300 (65%), Gaps = 26/300 (8%)
Query: 38 SFEYLQGDYYIAPVFMASLCI--------------------WGGKGQGKSFQTELIFQAM 77
+F+ ++ +YIAP F+ L + WGGKGQGKSFQ EL+F M
Sbjct: 127 NFDNIKDGFYIAPAFLDKLVVHIAKNFMTLPNIKVPLILGVWGGKGQGKSFQCELVFAKM 186
Query: 78 GIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NT 136
GI P++MSAGELES AGEP KLIR+RYR AS +++ +GKM L IND+DAG GR G T
Sbjct: 187 GINPIMMSAGELESGNAGEPAKLIRQRYREASDLIK-KGKMCVLFINDLDAGAGRLGGTT 245
Query: 137 QMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRM 196
Q TVNNQ+V TLMN++DNPT V + + + D R+PII TGNDFST+YAPLIRDGRM
Sbjct: 246 QYTVNNQMVNATLMNIADNPTNVQLPGMYNKED-NARVPIIVTGNDFSTLYAPLIRDGRM 304
Query: 197 EKFYWQPNLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKW 256
EKFYW P ED + + ++ DG+ + ++ +V P Q++DF+GALR+R YD + KW
Sbjct: 305 EKFYWAPTREDRIGVCKGIFRTDGVPEKDIVELVDKHPGQSIDFFGALRARVYDDEVRKW 364
Query: 257 IDDIGGVENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYM 316
I + GV+++G KL+ ++ P F P+ T++ LL L++EQ+ + +L+ +Y+
Sbjct: 365 ISGV-GVDSVGKKLVNSKEGP--PTFDQPKMTLDKLLLYASMLVQEQENVKRVQLADQYL 421
>sp|P23489|RCA_CHLRE Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic
OS=Chlamydomonas reinhardtii PE=2 SV=1
Length = 408
Score = 271 bits (692), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 142/331 (42%), Positives = 208/331 (62%), Gaps = 31/331 (9%)
Query: 11 VIDPLFAGNF-LGKDSDIVF---DYRQKVTRSFEYLQGDYYIAPVFMAS----------- 55
++D LF G F G + V +Y + SF ++ +YI+P F+
Sbjct: 65 MVDDLFQGGFGAGGTHNAVLSSQEYLSQSRASFNNIEDGFYISPAFLDKMTIHIAKNFMD 124
Query: 56 ---------LCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYR 106
L IWGGKGQGK+FQ L ++ +GI P++MSAGELES AGEP KLIR RYR
Sbjct: 125 LPKIKVPLILGIWGGKGQGKTFQCALAYKKLGIAPIVMSAGELESGNAGEPAKLIRTRYR 184
Query: 107 TASQVVQNQGKMSCLMINDIDAGLGRFGNT-QMTVNNQIVVGTLMNLSDNPTRVSIGQDW 165
AS +++ +G+M L IND+DAG GR G+T Q TVNNQ+V TLMN++DNPT V + +
Sbjct: 185 EASDIIK-KGRMCSLFINDLDAGAGRMGDTTQYTVNNQMVNATLMNIADNPTNVQLPGVY 243
Query: 166 RESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITKDE 225
+ +I R+PI+ TGNDFST+YAPLIRDGRMEK+YW P ED + + ++++D + + E
Sbjct: 244 KNEEIP-RVPIVCTGNDFSTLYAPLIRDGRMEKYYWNPTREDRIGVCMGIFQEDNVQRRE 302
Query: 226 VGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVFTPP 285
V ++V TFP Q++DF+GALR+R YD + +WI D GV+ +G +L+ R+ +P +
Sbjct: 303 VENLVDTFPGQSIDFFGALRARVYDDMVRQWITDT-GVDKIGQQLVNARQKVAMPKVS-- 359
Query: 286 EKTVEALLESGYSLLREQQLIMETKLSKEYM 316
+ L++ G SL+ EQ+ + +L+ Y+
Sbjct: 360 -MDLNVLIKYGKSLVDEQENVKRVQLADAYL 389
>sp|P58555|RCA_NOSS1 Ribulose bisphosphate carboxylase/oxygenase activase OS=Nostoc sp.
(strain PCC 7120 / UTEX 2576) GN=rca PE=3 SV=1
Length = 414
Score = 250 bits (638), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 134/291 (46%), Positives = 187/291 (64%), Gaps = 25/291 (8%)
Query: 46 YYIAPVFMASLC--------------------IWGGKGQGKSFQTELIFQAMGIEPVIMS 85
YYIAP F+ L I G KG+GK+FQ EL F+ MGIE ++S
Sbjct: 3 YYIAPRFLDKLAVHITKNFLNIPGVRVPLILGIHGRKGEGKTFQCELAFEKMGIEVTLIS 62
Query: 86 AGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGN-TQMTVNNQI 144
GELES AG+P +LIR RYR +++++ +GKM LMIND+DAG GRF TQ TVN Q+
Sbjct: 63 GGELESPDAGDPARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEGTQYTVNTQL 122
Query: 145 VVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPN 204
V TLMN++DNPT V + + +S+ R+PII TGNDFST+YAPLIRDGRMEKFYW+PN
Sbjct: 123 VNATLMNIADNPTDVQLPGSY-DSNPIRRVPIIVTGNDFSTLYAPLIRDGRMEKFYWEPN 181
Query: 205 LEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVE 264
+D + IV ++ +DG+++ E+ +V TFP Q++DF+ ALRSR YD I +I + G E
Sbjct: 182 RDDKVGIVGGIFAEDGLSQREIEQLVDTFPKQSIDFFSALRSRIYDIQIRDFIHKV-GFE 240
Query: 265 NLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEY 315
+ +++ + P F P+ ++ L+ESG +L EQQ + ++L EY
Sbjct: 241 RISLRVVNSLEAP--PEFKKPDFSLAHLIESGNLVLGEQQRVDNSQLVDEY 289
>sp|Q06721|RCA_ANASC Ribulose bisphosphate carboxylase/oxygenase activase OS=Anabaena
sp. (strain CA / ATCC 33047) GN=rca PE=3 SV=1
Length = 415
Score = 249 bits (635), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 131/293 (44%), Positives = 188/293 (64%), Gaps = 25/293 (8%)
Query: 46 YYIAPVFMASLC--------------------IWGGKGQGKSFQTELIFQAMGIEPVIMS 85
YYIAP F+ L I G KG+GK+FQ EL F+ MG+E ++S
Sbjct: 3 YYIAPRFLDKLAVHITKNFLNLPGVRVPLILGIHGRKGEGKTFQCELAFEKMGVEVTLIS 62
Query: 86 AGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGN-TQMTVNNQI 144
GELES AG+P +LIR RYR +++++ +GKM LMIND+DAG GRF TQ TVN Q+
Sbjct: 63 GGELESPDAGDPARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEGTQYTVNTQL 122
Query: 145 VVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPN 204
V TLMN++DNPT V + + +S R+PII TGNDFST+YAPLIRDGRMEKFYW+P+
Sbjct: 123 VNATLMNIADNPTDVQLPGSY-DSTPLRRVPIIVTGNDFSTLYAPLIRDGRMEKFYWEPH 181
Query: 205 LEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVE 264
++ + IV ++ +DG+++ +V +V +FPNQ++DF+ ALRSR YD I +I + G E
Sbjct: 182 RDEKVGIVGGIFAEDGLSQRDVEKLVDSFPNQSIDFFSALRSRIYDEQIRDFIHQV-GYE 240
Query: 265 NLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYMK 317
N+ +++ + P F P+ T+ L+ES ++ EQ+ I ++L EY +
Sbjct: 241 NVSLRVVNSLEGP--PAFKKPDFTLSHLIESANFMVAEQKRIETSQLVDEYNR 291
>sp|P85086|RCA_ARAHY Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic
(Fragments) OS=Arachis hypogaea GN=RCA PE=1 SV=1
Length = 140
Score = 82.4 bits (202), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 66/212 (31%), Positives = 80/212 (37%), Gaps = 104/212 (49%)
Query: 34 KVTRSFEYLQGDYYIAPVFMASLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESER 93
V S+EY+ + + L IWGGK MGI P++MSAGELES
Sbjct: 33 AVMSSYEYISQGLRVPLI----LGIWGGK--------------MGINPIMMSAGELESGN 74
Query: 94 AGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLS 153
AGEP KM CL IND+DAG G
Sbjct: 75 AGEP------------------AKMCCLFINDLDAGAG---------------------- 94
Query: 154 DNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVH 213
R+PII TGNDFST+YAPLIR G +
Sbjct: 95 -------------------RVPIIVTGNDFSTLYAPLIRIGVCTGIF------------- 122
Query: 214 RMYEKDGITKDEVGSIVKTFPNQALDFYGALR 245
+V TFP Q++DF+GALR
Sbjct: 123 --------------RLVDTFPGQSIDFFGALR 140
>sp|P85111|RCA_VITSX Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic
(Fragments) OS=Vitis sp. PE=1 SV=1
Length = 62
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/58 (50%), Positives = 32/58 (55%), Gaps = 18/58 (31%)
Query: 77 MGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG 134
MGI P++MSAGELES AGEP KM CL IND+DAG GR G
Sbjct: 16 MGINPIMMSAGELESGNAGEP------------------AKMCCLFINDLDAGAGRIG 55
>sp|Q9ZPR1|CD48B_ARATH Cell division control protein 48 homolog B OS=Arabidopsis thaliana
GN=CDC48B PE=2 SV=1
Length = 603
Score = 41.2 bits (95), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 70/166 (42%), Gaps = 17/166 (10%)
Query: 56 LCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQ 115
L ++G G GK+ + Q +++S + AGE K++RE + AS +
Sbjct: 59 LLLYGPPGTGKTSLVRAVVQECDAHLIVLSPHSVHRAHAGESEKVLREAFAEASSHAVSD 118
Query: 116 GKMSCLMINDIDAGLGRF-GNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRI 174
K S + I++ID R + V + TLM+ S+ P S R+
Sbjct: 119 -KPSVIFIDEIDVLCPRRDARREQDVRIASQLFTLMD-SNKP-----------SSSAPRV 165
Query: 175 PIIFTGNDFSTIYAPLIRDGRMEKF--YWQPNLEDILNIVHRMYEK 218
++ + N I L R GR + PN ED L I+ ++Y K
Sbjct: 166 VVVASTNRVDAIDPALRRAGRFDALVEVSTPNEEDRLKIL-QLYTK 210
>sp|Q8SRH0|PRS4_ENCCU 26S protease regulatory subunit 4 homolog OS=Encephalitozoon
cuniculi (strain GB-M1) GN=RPT2 PE=1 SV=1
Length = 424
Score = 35.8 bits (81), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 62/145 (42%), Gaps = 19/145 (13%)
Query: 56 LCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQ 115
+ ++G G GK+ + + + + EL E GE KL+RE +R A +
Sbjct: 206 VILYGLPGTGKTLLAKAVANQTSATFLRVVGTELIQEYLGEGPKLVRELFRVA-----DM 260
Query: 116 GKMSCLMINDIDAGLGRFGNTQMTVNNQI--VVGTLMNLSDNPTRVSIGQDWRESDITNR 173
S + I++IDA G+ NT ++ + L+N D G D R N
Sbjct: 261 HAPSIIFIDEIDAIGGKRYNTSSGGRREVQRTMLELLNQLD-------GFDTR-----ND 308
Query: 174 IPIIFTGNDFSTIYAPLIRDGRMEK 198
I +I N + LIR GR+++
Sbjct: 309 IKVIMATNKIEALDPALIRPGRIDR 333
>sp|Q07844|RIX7_YEAST Ribosome biogenesis ATPase RIX7 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RIX7 PE=1 SV=1
Length = 837
Score = 35.8 bits (81), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 76/168 (45%), Gaps = 22/168 (13%)
Query: 56 LCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQ 115
+ +WG G GK+ + + + + EL ++ GE + IR+ + A +
Sbjct: 570 VLLWGPPGCGKTLLAKAVANESRANFISIKGPELLNKYVGESERSIRQVFTRA------R 623
Query: 116 GKMSCLM-INDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRI 174
+ C++ +++DA + R +T ++ ++ VV TL+ D G + R I
Sbjct: 624 ASVPCVIFFDELDALVPR-RDTSLSESSSRVVNTLLTELD-------GLNDRRG-----I 670
Query: 175 PIIFTGNDFSTIYAPLIRDGRMEK--FYWQPNLEDILNIVHRMYEKDG 220
+I N I ++R GR++K F PN E+ L+I+ + + G
Sbjct: 671 FVIGATNRPDMIDPAMLRPGRLDKSLFIELPNTEEKLDIIKTLTKSHG 718
>sp|O05209|VAT_THEAC VCP-like ATPase OS=Thermoplasma acidophilum (strain ATCC 25905 /
DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165) GN=vat
PE=1 SV=1
Length = 745
Score = 35.4 bits (80), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 32/148 (21%), Positives = 61/148 (41%), Gaps = 17/148 (11%)
Query: 56 LCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQ 115
++G G GK+ + + + + E+ S+ GE K IRE ++ A QV
Sbjct: 504 FLLYGPPGVGKTLLAKAVATESNANFISIKGPEVLSKWVGESEKAIREIFKKAKQVAP-- 561
Query: 116 GKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIP 175
+ + +++ID+ R G T + + +V L+ D ++ N +
Sbjct: 562 ---AIVFLDEIDSIAPRRGTTSDSGVTERIVNQLLTSLDG------------IEVMNGVV 606
Query: 176 IIFTGNDFSTIYAPLIRDGRMEKFYWQP 203
+I N + L+R GR +K + P
Sbjct: 607 VIGATNRPDIMDPALLRAGRFDKLIYIP 634
>sp|B6YV97|COBQ_THEON Probable cobyric acid synthase OS=Thermococcus onnurineus (strain
NA1) GN=cobQ PE=3 SV=1
Length = 484
Score = 35.0 bits (79), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 68/159 (42%), Gaps = 29/159 (18%)
Query: 67 SFQTELIFQAMGIEPVIMSAGELES-ERAGEPGKLIRERYRTASQVVQNQGKMSCLMIND 125
S + EL +AM + +M E+ E AG P ++ + Y A+ V K +++ D
Sbjct: 107 SRKEELFRKAMKVLDELMVEHEIVIIEGAGSPVEINLKDYDIANMRVARHAKAKTILVTD 166
Query: 126 IDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFST 185
ID G G F + +VGT+ LS + +G F N F
Sbjct: 167 IDRG-GSFAS---------IVGTMELLSKEERNLILG---------------FVFNKFRG 201
Query: 186 IYAPLIRDG--RMEKFYWQPNLEDILNIVHRMYEKDGIT 222
A L+ G +EK Y +P L + I H++ E+D +T
Sbjct: 202 -DASLLEPGFEYLEKRYGKPTLGVVPCIEHKLPEEDSLT 239
>sp|Q58889|PRS2_METJA Putative 26S protease regulatory subunit homolog MJ1494
OS=Methanocaldococcus jannaschii (strain ATCC 43067 /
DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ1494
PE=3 SV=2
Length = 371
Score = 35.0 bits (79), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 8/80 (10%)
Query: 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQN 114
++ +G G GK+ + +++ A EL E G+ K+IRE Y+ AS+
Sbjct: 156 NVLFYGPPGTGKTLMARALATETNSSFILVKAPELIGEHVGDASKMIRELYQRASE---- 211
Query: 115 QGKMSCLM-INDIDA-GLGR 132
C++ I+++DA GL R
Sbjct: 212 --SAPCIVFIDELDAIGLSR 229
>sp|A3CV35|PAN_METMJ Proteasome-activating nucleotidase OS=Methanoculleus marisnigri
(strain ATCC 35101 / DSM 1498 / JR1) GN=pan PE=3 SV=1
Length = 412
Score = 34.7 bits (78), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 59/148 (39%), Gaps = 15/148 (10%)
Query: 56 LCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQ 115
+ ++G G GK+ + + + EL + GE +L+RE + A Q
Sbjct: 190 VLLYGPPGTGKTLLARAVAHQTNAHFLRVVGSELVQKYIGEGARLVRELFDLAKQRAP-- 247
Query: 116 GKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIP 175
S + I++IDA +G N T ++ V TLM L D + TNRI
Sbjct: 248 ---SIIFIDEIDA-IGAHRNDSTTSGDREVQRTLMQLLAEMDGFDNRGDVKIVAATNRID 303
Query: 176 IIFTGNDFSTIYAPLIRDGRMEKFYWQP 203
I+ L+R GR ++ P
Sbjct: 304 ILDRA---------LLRPGRFDRMIEIP 322
>sp|O28972|Y1297_ARCFU Cell division cycle protein 48 homolog AF_1297 OS=Archaeoglobus
fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM
9628 / NBRC 100126) GN=AF_1297 PE=3 SV=1
Length = 733
Score = 34.3 bits (77), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 59/148 (39%), Gaps = 17/148 (11%)
Query: 56 LCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQ 115
+ ++G G GK+ + + + + EL S+ GE K +RE +R A QV
Sbjct: 492 ILLFGPPGTGKTLLAKAVANESNANFISVKGPELLSKWVGESEKHVREMFRKARQVAP-- 549
Query: 116 GKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIP 175
+ ++ID+ R G + + VV L+ D + D+
Sbjct: 550 ---CVIFFDEIDSLAPRRGGIGDSHVTERVVSQLLTELDGLEEL--------KDVV---- 594
Query: 176 IIFTGNDFSTIYAPLIRDGRMEKFYWQP 203
+I N I L+R GR+E+ + P
Sbjct: 595 VIAATNRPDMIDPALLRPGRLERHIYIP 622
>sp|Q9HNP9|PAN2_HALSA Proteasome-activating nucleotidase 2 OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=pan2 PE=3
SV=1
Length = 411
Score = 33.9 bits (76), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 32/149 (21%), Positives = 64/149 (42%), Gaps = 15/149 (10%)
Query: 56 LCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQ 115
+ + G G GK+ + + + M+ EL + GE +L+R+ + A Q
Sbjct: 189 VLLHGPPGTGKTMLAKAVANQTDASFIKMAGSELVRKFIGEGSRLVRDLFELA-----EQ 243
Query: 116 GKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIP 175
+ + I++IDA + +++ + + ++ + LS+ G D R I
Sbjct: 244 KDPAIIFIDEIDAVAAKRTDSKTSGDAEVQRTMMQLLSEMD-----GFDER-----GDIR 293
Query: 176 IIFTGNDFSTIYAPLIRDGRMEKFYWQPN 204
II N F + + ++R GR ++ PN
Sbjct: 294 IIAATNRFDMLDSAILRPGRFDRLIEVPN 322
>sp|A1WVT8|ARLY_HALHL Argininosuccinate lyase OS=Halorhodospira halophila (strain DSM 244
/ SL1) GN=argH PE=3 SV=1
Length = 465
Score = 33.9 bits (76), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 11/54 (20%)
Query: 197 EKFYWQPNLEDI-LNIVHRMYEKDGIT----------KDEVGSIVKTFPNQALD 239
E+F W P LED+ +NI HR+ ++ G D++ + V+ F +A+D
Sbjct: 81 ERFPWSPQLEDVHMNIEHRLTQRIGEAGKKLHTGRSRNDQIATDVRLFLREAID 134
>sp|Q3Z717|SYR_DEHE1 Arginine--tRNA ligase OS=Dehalococcoides ethenogenes (strain 195)
GN=argS PE=3 SV=1
Length = 556
Score = 33.9 bits (76), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 18/101 (17%)
Query: 25 SDIVFDYRQKVTRSFEYLQGDYYIAPVFMASLCIWGGKGQGKSFQTELIFQAMGIEPVIM 84
SDI + Y + + R F+ + + IWG QG + + + A+GI P +
Sbjct: 320 SDIAYHYNKFIERKFDRV-------------INIWGADHQGHVSRMKAMLSALGINPERL 366
Query: 85 SAGELESERAGEPGKLIRERYRTA-----SQVVQNQGKMSC 120
+ + G+L+R RT S+V++ G +C
Sbjct: 367 TTLLFQMITLKRGGELVRLSKRTGEMISLSEVIEEVGADAC 407
>sp|D4GUJ7|PAN1_HALVD Proteasome-activating nucleotidase 1 OS=Haloferax volcanii (strain
ATCC 29605 / DSM 3757 / JCM 8879 / NBRC 14742 / NCIMB
2012 / VKM B-1768 / DS2) GN=pan1 PE=2 SV=2
Length = 406
Score = 33.9 bits (76), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 75/174 (43%), Gaps = 16/174 (9%)
Query: 54 ASLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQ 113
+ + ++G G GK+ + + + M+ EL + GE KL+R+ + A
Sbjct: 185 SGVLLYGPPGTGKTMLAKAVANQTNASFIKMAGSELVHKFIGEGAKLVRDLFEVA----- 239
Query: 114 NQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNR 173
+ + + + I++IDA + +++ T + V T+M L G D R
Sbjct: 240 RENEPAVIFIDEIDAIASKRTDSK-TSGDAEVQRTMMQLLAEMD----GFDER-----GN 289
Query: 174 IPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNL-EDILNIVHRMYEKDGITKDEV 226
I II N F + ++R GR ++ P ED I+ +++ + D+V
Sbjct: 290 IRIIAATNRFDMLDPAILRPGRFDRLIEVPKPNEDGREIIFQIHTRKMNVSDDV 343
>sp|A6UQT3|PAN_METVS Proteasome-activating nucleotidase OS=Methanococcus vannielii
(strain SB / ATCC 35089 / DSM 1224) GN=pan PE=3 SV=1
Length = 407
Score = 33.1 bits (74), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 83/191 (43%), Gaps = 20/191 (10%)
Query: 56 LCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQ 115
+ ++G G GK+ + + + V + EL + GE KL+R+ ++ A +
Sbjct: 185 VLLYGPPGTGKTLLAKAVARETNASFVRVVGSELVKKFIGEGAKLVRDVFKLAKE----- 239
Query: 116 GKMSCLM-INDIDAGLGRFGNTQMTVNNQIVVGTLMNLS------DNPTRVSIGQDWRES 168
K C++ I++IDA + + +T ++ V TLM L D+ V I
Sbjct: 240 -KSPCIIFIDEIDAVASKRTES-LTGGDREVQRTLMQLLAEMDGFDSRGDVKIIAATNRP 297
Query: 169 DITNRIPIIFTGNDFSTI--YAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITKDEV 226
DI + P I F I A DGR+E F + +I ++ R K + ++ V
Sbjct: 298 DILD--PAILRPGRFDRIIEIAAPDEDGRLEIFKIHTDKMNIKSVDLREIAK--MAENMV 353
Query: 227 GSIVKTFPNQA 237
G+ +K +A
Sbjct: 354 GADIKAVCTEA 364
>sp|O14325|YB7A_SCHPO Uncharacterized AAA domain-containing protein C16E9.10c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC16E9.10c PE=1 SV=1
Length = 779
Score = 33.1 bits (74), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 45/98 (45%), Gaps = 7/98 (7%)
Query: 58 IWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGK 117
+ G G GK+ + +G+ + +SA + S +GE K +RE + A +
Sbjct: 213 LHGPPGCGKTMLANALANELGVPFISISAPSIVSGMSGESEKKVREVFEEAKSLA----- 267
Query: 118 MSCLM-INDIDAGLGRFGNTQMTVNNQIVVGTLMNLSD 154
CLM I++IDA + + Q + +IV L + +
Sbjct: 268 -PCLMFIDEIDAVTPKRESAQREMERRIVAQFLTCMDE 304
>sp|Q6B952|YCF46_GRATL Uncharacterized AAA domain-containing protein ycf46 OS=Gracilaria
tenuistipitata var. liui GN=ycf46 PE=3 SV=1
Length = 491
Score = 32.7 bits (73), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 33/150 (22%), Positives = 64/150 (42%), Gaps = 21/150 (14%)
Query: 60 GGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMS 119
G +G GKS + I + + + G++ + G+ + +R +TA Q
Sbjct: 267 GIQGTGKSLIAKAISGQWNLPLLKLDMGKIFASLVGQSEERMRHMIKTAEQ-----SSPC 321
Query: 120 CLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFT 179
L I++ID R N + N V+ T++ W S+ + +I T
Sbjct: 322 ILWIDEIDKCFTRLNNYTDSGTNGRVLSTMLT-------------WL-SEKKKPVFVIAT 367
Query: 180 GNDFSTIYAPLIRDGRMEKFYW--QPNLED 207
N ++ + L+R GR ++ ++ P+LE+
Sbjct: 368 ANQVLSLPSELLRKGRFDEIFFLNLPSLEE 397
>sp|P78578|PRS6B_ASPNG 26S protease regulatory subunit 6B homolog OS=Aspergillus niger
GN=tbpA PE=3 SV=1
Length = 423
Score = 32.7 bits (73), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 29/154 (18%), Positives = 69/154 (44%), Gaps = 19/154 (12%)
Query: 56 LCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQ 115
+ ++G G GK+ + + + + ++ E + GE +++R+ +R A +
Sbjct: 203 VLLYGPPGTGKTMLVKAVANSTTASFIRVNGSEFVQKYLGEGPRMVRDVFRMA-----RE 257
Query: 116 GKMSCLMINDIDAGLGRFGNTQMTVNNQI--VVGTLMNLSDNPTRVSIGQDWRESDITNR 173
+ + I++IDA + + Q + ++ ++ L+N D + +S +
Sbjct: 258 NSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDG---------FEQS---SN 305
Query: 174 IPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLED 207
+ +I N T+ L+R GR+++ P+L D
Sbjct: 306 VKVIMATNRADTLDPALLRPGRLDRKIEFPSLRD 339
>sp|Q7NBV1|KCY_MYCGA Cytidylate kinase OS=Mycoplasma gallisepticum (strain R(low /
passage 15 / clone 2)) GN=cmk PE=3 SV=2
Length = 224
Score = 32.0 bits (71), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 60/142 (42%), Gaps = 25/142 (17%)
Query: 56 LCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQ 115
+ I G G GKS +L+ Q +G + +S G++ RA LI+E + Q++ N
Sbjct: 10 IAIDGPAGSGKSTVAKLVAQRLGFD--YLSTGKIF--RAFY--YLIKENNWSIDQLISNF 63
Query: 116 GKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWR--------E 167
K C F Q+ +N + + L + + + I QD + +
Sbjct: 64 NKYEC-----------AFNGDQVVINKENISQLLNDPTISKGASEIAQDPKIRAYALSLQ 112
Query: 168 SDITNRIPIIFTGNDFSTIYAP 189
D N+ P++ G D +++ P
Sbjct: 113 QDYANKKPVVMDGRDITSVVLP 134
>sp|Q9Y7X6|ISH1_SCHPO Stress response protein ish1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=ish1 PE=1 SV=1
Length = 684
Score = 32.0 bits (71), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 27/50 (54%)
Query: 86 AGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGN 135
AGE S++AG+ +L+ E+ A Q + + ++ +I GRFGN
Sbjct: 249 AGEFVSDKAGDAKELVNEKSSEAGQYAGQKMEEGGELLQEISKRRGRFGN 298
>sp|Q07590|SAV_SULAC Protein SAV OS=Sulfolobus acidocaldarius (strain ATCC 33909 / DSM
639 / JCM 8929 / NBRC 15157 / NCIMB 11770) GN=sav PE=3
SV=2
Length = 780
Score = 32.0 bits (71), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 31/148 (20%), Positives = 60/148 (40%), Gaps = 17/148 (11%)
Query: 56 LCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQ 115
+ ++G G GK+ + + G + + E+ S+ GE K IRE +R A Q
Sbjct: 524 ILLFGPPGTGKTMLAKAVATESGANFIAVRGPEILSKWVGESEKAIREIFRKARQAAP-- 581
Query: 116 GKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIP 175
+ + ++ID+ G + + + +V L+ D + N++
Sbjct: 582 ---TVIFFDEIDSIAPIRGLSTDSGVTERIVNQLLAEMDGIVPL------------NKVV 626
Query: 176 IIFTGNDFSTIYAPLIRDGRMEKFYWQP 203
II N + L+R GR ++ + P
Sbjct: 627 IIAATNRPDILDPALLRPGRFDRLIYVP 654
>sp|P34123|PRS6B_DICDI 26S protease regulatory subunit 6B homolog OS=Dictyostelium
discoideum GN=psmC4 PE=1 SV=1
Length = 403
Score = 32.0 bits (71), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 27/145 (18%), Positives = 62/145 (42%), Gaps = 19/145 (13%)
Query: 56 LCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQ 115
+ ++G G GK+ + + + + E + GE +L+R+ +R A +
Sbjct: 187 VLLYGPPGTGKTMLAKAVAHHTSAAFIRVVGSEFVQKYLGEGPRLVRDVFRLA-----RE 241
Query: 116 GKMSCLMINDIDAGLGRFGNTQMTVNNQI--VVGTLMNLSDNPTRVSIGQDWRESDITNR 173
+ + I++IDA + + Q + ++ ++ L+N D D++
Sbjct: 242 NSPAIIFIDEIDAIATKRFDAQTGADREVQRILMELLNQMDG------------FDVSVN 289
Query: 174 IPIIFTGNDFSTIYAPLIRDGRMEK 198
+ +I N T+ L+R GR+++
Sbjct: 290 VKVIMATNRQDTLDPALLRPGRLDR 314
>sp|P62193|PRS4_RAT 26S protease regulatory subunit 4 OS=Rattus norvegicus GN=Psmc1
PE=2 SV=1
Length = 440
Score = 31.6 bits (70), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 62/145 (42%), Gaps = 19/145 (13%)
Query: 56 LCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQ 115
+ ++G G GK+ + + + + EL + G+ KL+RE +R A +
Sbjct: 222 VILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAP-- 279
Query: 116 GKMSCLMINDIDA-GLGRF-GNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNR 173
S + I++IDA G R+ N+ Q + L+N D G D R
Sbjct: 280 ---SIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLD-------GFDSR-----GD 324
Query: 174 IPIIFTGNDFSTIYAPLIRDGRMEK 198
+ +I N T+ LIR GR+++
Sbjct: 325 VKVIMATNRIETLDPALIRPGRIDR 349
>sp|P62192|PRS4_MOUSE 26S protease regulatory subunit 4 OS=Mus musculus GN=Psmc1 PE=1
SV=1
Length = 440
Score = 31.6 bits (70), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 62/145 (42%), Gaps = 19/145 (13%)
Query: 56 LCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQ 115
+ ++G G GK+ + + + + EL + G+ KL+RE +R A +
Sbjct: 222 VILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAP-- 279
Query: 116 GKMSCLMINDIDA-GLGRF-GNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNR 173
S + I++IDA G R+ N+ Q + L+N D G D R
Sbjct: 280 ---SIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLD-------GFDSR-----GD 324
Query: 174 IPIIFTGNDFSTIYAPLIRDGRMEK 198
+ +I N T+ LIR GR+++
Sbjct: 325 VKVIMATNRIETLDPALIRPGRIDR 349
>sp|P62191|PRS4_HUMAN 26S protease regulatory subunit 4 OS=Homo sapiens GN=PSMC1 PE=1
SV=1
Length = 440
Score = 31.6 bits (70), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 62/145 (42%), Gaps = 19/145 (13%)
Query: 56 LCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQ 115
+ ++G G GK+ + + + + EL + G+ KL+RE +R A +
Sbjct: 222 VILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAP-- 279
Query: 116 GKMSCLMINDIDA-GLGRF-GNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNR 173
S + I++IDA G R+ N+ Q + L+N D G D R
Sbjct: 280 ---SIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLD-------GFDSR-----GD 324
Query: 174 IPIIFTGNDFSTIYAPLIRDGRMEK 198
+ +I N T+ LIR GR+++
Sbjct: 325 VKVIMATNRIETLDPALIRPGRIDR 349
>sp|Q55BV5|PRS4_DICDI 26S protease regulatory subunit 4 homolog OS=Dictyostelium
discoideum GN=psmC1 PE=1 SV=1
Length = 439
Score = 31.6 bits (70), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 68/156 (43%), Gaps = 22/156 (14%)
Query: 56 LCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQ 115
+ ++G G GK+ + + + + EL + G+ KL+RE +R A +
Sbjct: 221 VILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVADECAP-- 278
Query: 116 GKMSCLMINDIDA-GLGRFGNTQMTVNNQI--VVGTLMNLSDNPTRVSIGQDWRESDITN 172
S + I++IDA G R+ ++Q +I + L+N D G D R
Sbjct: 279 ---SIVFIDEIDAVGTKRY-DSQSGGEREIQRTMLELLNQLD-------GFDAR-----T 322
Query: 173 RIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDI 208
+ +I N T+ LIR GR+++ P L DI
Sbjct: 323 DVKVIMATNRIETLDPALIRPGRIDRKIEFP-LPDI 357
>sp|Q5UT56|PAN2_HALVD Proteasome-activating nucleotidase 2 OS=Haloferax volcanii (strain
ATCC 29605 / DSM 3757 / JCM 8879 / NBRC 14742 / NCIMB
2012 / VKM B-1768 / DS2) GN=pan2 PE=2 SV=1
Length = 412
Score = 31.6 bits (70), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 30/150 (20%), Positives = 66/150 (44%), Gaps = 15/150 (10%)
Query: 54 ASLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQ 113
+ + ++G G GK+ + + + M+ EL + GE +L+R+ ++ A+
Sbjct: 187 SGVLLYGPPGTGKTMLAKAVANETNASFIKMAGSELVQKFIGEGARLVRDLFKLAA---- 242
Query: 114 NQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNR 173
+ + + I++IDA + +++ + + ++ + LS+ G D R
Sbjct: 243 -EREPVVVFIDEIDAVASKRTDSKTSGDAEVQRTMMQLLSEMD-----GFDDR-----GD 291
Query: 174 IPIIFTGNDFSTIYAPLIRDGRMEKFYWQP 203
I II N F + ++R GR ++ P
Sbjct: 292 IRIIAATNRFDMLDEAILRPGRFDRLIEVP 321
>sp|P52917|VPS4_YEAST Vacuolar protein sorting-associated protein 4 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=VPS4 PE=1
SV=1
Length = 437
Score = 31.6 bits (70), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 22/100 (22%), Positives = 48/100 (48%), Gaps = 5/100 (5%)
Query: 54 ASLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQ 113
+ + ++G G GKS+ + + +S+ +L S+ GE KL+++ + A
Sbjct: 167 SGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMA----- 221
Query: 114 NQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLS 153
+ K S + I+++DA G G + + +I L+ ++
Sbjct: 222 RENKPSIIFIDEVDALTGTRGEGESEASRRIKTELLVQMN 261
>sp|Q09803|VPS4_SCHPO Suppressor protein of bem1/bed5 double mutants
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=vps4 PE=3 SV=1
Length = 432
Score = 31.6 bits (70), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
Query: 56 LCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQ 115
+ ++G G GKS+ + + G +S+ +L S+ GE +L+R+ + A +
Sbjct: 165 ILLYGPPGTGKSYLAKAVATEAGSTFFSISSSDLVSKWMGESERLVRQLFEMA-----RE 219
Query: 116 GKMSCLMINDIDA 128
K S + I++ID+
Sbjct: 220 QKPSIIFIDEIDS 232
>sp|P48601|PRS4_DROME 26S protease regulatory subunit 4 OS=Drosophila melanogaster
GN=Pros26.4 PE=2 SV=2
Length = 439
Score = 31.6 bits (70), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 62/145 (42%), Gaps = 19/145 (13%)
Query: 56 LCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQ 115
+ ++G G GK+ + + + + EL + G+ KL+RE +R A +
Sbjct: 221 VILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAP-- 278
Query: 116 GKMSCLMINDIDA-GLGRF-GNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNR 173
S + I++IDA G R+ N+ Q + L+N D G D R
Sbjct: 279 ---SIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLD-------GFDSR-----GD 323
Query: 174 IPIIFTGNDFSTIYAPLIRDGRMEK 198
+ +I N T+ LIR GR+++
Sbjct: 324 VKVIMATNRIETLDPALIRPGRIDR 348
>sp|O74445|PRS10_SCHPO Probable 26S protease subunit rpt4 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=rpt4 PE=3 SV=2
Length = 388
Score = 31.2 bits (69), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 31/143 (21%), Positives = 65/143 (45%), Gaps = 15/143 (10%)
Query: 56 LCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQ 115
+ ++G G GK+ + ++G+ + + + + + GE ++IRE + A +
Sbjct: 169 VLLYGPPGTGKTLLARAVAASLGVNFLKVVSSAIVDKYIGESARIIREMFGYA-----KE 223
Query: 116 GKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIP 175
+ + +++IDA GR + + + +I TLM L + G D+ +
Sbjct: 224 HEPCVIFMDEIDAIGGRRFSEGTSADREI-QRTLMELLNQMD----GFDY-----LGQTK 273
Query: 176 IIFTGNDFSTIYAPLIRDGRMEK 198
II N T+ L+R GR+++
Sbjct: 274 IIMATNRPDTLDPALLRPGRLDR 296
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.138 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 121,688,413
Number of Sequences: 539616
Number of extensions: 5327605
Number of successful extensions: 13393
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 39
Number of HSP's that attempted gapping in prelim test: 13273
Number of HSP's gapped (non-prelim): 69
length of query: 321
length of database: 191,569,459
effective HSP length: 117
effective length of query: 204
effective length of database: 128,434,387
effective search space: 26200614948
effective search space used: 26200614948
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)