Query 020787
Match_columns 321
No_of_seqs 179 out of 573
Neff 4.4
Searched_HMMs 46136
Date Fri Mar 29 05:09:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020787.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020787hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00020 ribulose bisphosphate 100.0 4E-107 9E-112 793.9 27.9 312 7-321 80-413 (413)
2 KOG0651 26S proteasome regulat 100.0 1.2E-71 2.6E-76 533.1 14.2 272 2-318 91-388 (388)
3 COG1222 RPT1 ATP-dependent 26S 100.0 2.4E-55 5.2E-60 426.5 15.1 203 41-260 166-389 (406)
4 KOG0730 AAA+-type ATPase [Post 100.0 1.3E-50 2.8E-55 414.5 12.7 231 42-299 450-690 (693)
5 KOG0733 Nuclear AAA ATPase (VC 100.0 4.6E-50 1E-54 408.2 14.0 221 55-297 547-783 (802)
6 KOG0733 Nuclear AAA ATPase (VC 100.0 2.5E-47 5.5E-52 388.3 15.1 184 55-259 225-414 (802)
7 KOG0736 Peroxisome assembly fa 100.0 3E-46 6.6E-51 387.0 15.7 187 55-260 707-899 (953)
8 KOG0727 26S proteasome regulat 100.0 1.5E-44 3.2E-49 341.2 11.7 189 55-260 191-393 (408)
9 KOG0729 26S proteasome regulat 100.0 6.3E-43 1.4E-47 332.1 9.4 202 42-260 193-415 (435)
10 KOG0728 26S proteasome regulat 100.0 3E-42 6.6E-47 325.3 13.9 189 55-260 183-385 (404)
11 KOG0735 AAA+-type ATPase [Post 100.0 6.5E-42 1.4E-46 352.9 15.5 191 55-267 703-899 (952)
12 KOG0726 26S proteasome regulat 100.0 1.9E-42 4E-47 331.3 9.1 190 55-260 221-423 (440)
13 KOG0652 26S proteasome regulat 100.0 4E-41 8.7E-46 319.1 11.5 190 55-260 207-409 (424)
14 KOG0738 AAA+-type ATPase [Post 100.0 6.6E-41 1.4E-45 328.7 11.6 224 55-300 247-486 (491)
15 KOG0734 AAA+-type ATPase conta 100.0 1.9E-40 4.1E-45 334.7 13.4 180 55-257 339-522 (752)
16 COG0464 SpoVK ATPases of the A 100.0 1.8E-39 3.8E-44 322.7 17.6 184 55-260 278-466 (494)
17 TIGR01243 CDC48 AAA family ATP 100.0 7.4E-38 1.6E-42 326.1 16.6 223 55-298 489-725 (733)
18 KOG0731 AAA+-type ATPase conta 100.0 9.4E-38 2E-42 325.8 15.4 176 55-252 346-529 (774)
19 KOG0741 AAA+-type ATPase [Post 100.0 1.4E-37 3E-42 313.8 6.5 198 20-239 223-445 (744)
20 COG0465 HflB ATP-dependent Zn 100.0 3E-36 6.6E-41 308.8 16.3 224 55-301 185-420 (596)
21 CHL00195 ycf46 Ycf46; Provisio 100.0 4.2E-36 9.2E-41 302.6 15.5 180 55-258 261-446 (489)
22 KOG0739 AAA+-type ATPase [Post 100.0 2.2E-36 4.7E-41 290.3 7.2 165 55-238 168-339 (439)
23 TIGR03689 pup_AAA proteasome A 100.0 1.2E-34 2.7E-39 293.5 18.0 226 55-315 218-494 (512)
24 PTZ00454 26S protease regulato 100.0 5.9E-35 1.3E-39 287.6 14.0 181 55-259 181-369 (398)
25 CHL00206 ycf2 Ycf2; Provisiona 100.0 9.9E-35 2.2E-39 321.7 14.9 175 55-257 1632-1858(2281)
26 PRK03992 proteasome-activating 100.0 8.2E-34 1.8E-38 277.3 18.2 184 55-259 167-355 (389)
27 KOG0730 AAA+-type ATPase [Post 100.0 5.2E-34 1.1E-38 292.7 16.4 234 55-315 220-460 (693)
28 KOG0737 AAA+-type ATPase [Post 100.0 2.1E-34 4.6E-39 280.6 10.8 167 55-239 129-301 (386)
29 TIGR01241 FtsH_fam ATP-depende 100.0 5.1E-33 1.1E-37 278.1 17.3 181 55-256 90-275 (495)
30 PTZ00361 26 proteosome regulat 100.0 1.1E-33 2.4E-38 281.9 12.0 167 55-238 219-393 (438)
31 COG1223 Predicted ATPase (AAA+ 100.0 6.9E-33 1.5E-37 262.4 9.6 169 49-238 143-323 (368)
32 KOG0732 AAA+-type ATPase conta 100.0 3.3E-32 7E-37 291.0 14.8 182 55-258 301-491 (1080)
33 TIGR01242 26Sp45 26S proteasom 100.0 1.8E-31 4E-36 256.8 14.6 181 55-259 158-346 (364)
34 CHL00176 ftsH cell division pr 100.0 4.4E-31 9.6E-36 273.5 18.4 180 55-255 218-402 (638)
35 PRK10733 hflB ATP-dependent me 100.0 2.2E-31 4.7E-36 275.4 15.3 183 55-258 187-374 (644)
36 KOG0740 AAA+-type ATPase [Post 100.0 2.1E-30 4.5E-35 257.5 9.9 229 45-299 172-420 (428)
37 PF00004 AAA: ATPase family as 100.0 1.6E-29 3.5E-34 203.4 9.7 131 56-203 1-131 (132)
38 TIGR01243 CDC48 AAA family ATP 100.0 1.4E-28 3.1E-33 256.7 15.5 182 55-258 214-398 (733)
39 KOG0744 AAA+-type ATPase [Post 99.8 5E-21 1.1E-25 185.8 10.3 149 55-217 179-341 (423)
40 KOG0743 AAA+-type ATPase [Post 99.8 1.1E-19 2.5E-24 181.4 14.0 165 55-242 237-411 (457)
41 TIGR02881 spore_V_K stage V sp 99.8 1.3E-19 2.8E-24 167.3 10.1 159 44-231 34-208 (261)
42 COG0464 SpoVK ATPases of the A 99.8 3.6E-19 7.8E-24 177.5 13.9 181 55-259 20-203 (494)
43 CHL00181 cbbX CbbX; Provisiona 99.8 2.6E-19 5.6E-24 169.5 11.1 150 55-231 61-226 (287)
44 TIGR02880 cbbX_cfxQ probable R 99.8 2.7E-19 5.8E-24 168.7 9.7 150 55-231 60-225 (284)
45 TIGR00763 lon ATP-dependent pr 99.8 1.1E-18 2.4E-23 184.1 12.1 162 55-234 349-535 (775)
46 TIGR02639 ClpA ATP-dependent C 99.8 1.2E-18 2.7E-23 182.6 12.4 161 55-241 205-398 (731)
47 PRK11034 clpA ATP-dependent Cl 99.7 8.2E-18 1.8E-22 177.9 11.3 160 56-241 210-402 (758)
48 TIGR03345 VI_ClpV1 type VI sec 99.7 8.6E-17 1.9E-21 171.9 12.3 160 55-240 210-402 (852)
49 PRK10865 protein disaggregatio 99.7 1.3E-16 2.8E-21 170.6 11.9 137 55-217 201-355 (857)
50 TIGR03346 chaperone_ClpB ATP-d 99.6 4.9E-16 1.1E-20 165.8 11.4 161 55-241 196-389 (852)
51 CHL00095 clpC Clp protease ATP 99.6 1E-15 2.2E-20 162.8 11.8 159 55-240 202-393 (821)
52 PRK00080 ruvB Holliday junctio 99.6 2.8E-15 6.1E-20 142.7 11.7 157 54-237 52-216 (328)
53 KOG0742 AAA+-type ATPase [Post 99.6 1.3E-15 2.8E-20 152.2 8.5 140 55-216 386-528 (630)
54 PRK04195 replication factor C 99.6 3.5E-14 7.6E-19 142.5 14.7 150 54-235 40-194 (482)
55 KOG0736 Peroxisome assembly fa 99.6 5.6E-14 1.2E-18 147.9 16.6 163 55-235 433-596 (953)
56 TIGR00635 ruvB Holliday juncti 99.6 7.8E-15 1.7E-19 136.6 8.9 155 55-236 32-194 (305)
57 PRK10787 DNA-binding ATP-depen 99.6 3.5E-14 7.6E-19 150.9 14.9 183 55-259 351-558 (784)
58 TIGR02640 gas_vesic_GvpN gas v 99.6 4.7E-14 1E-18 131.2 13.2 165 55-245 23-216 (262)
59 PF05496 RuvB_N: Holliday junc 99.5 4.4E-14 9.5E-19 131.7 12.0 154 53-233 50-211 (233)
60 PRK05342 clpX ATP-dependent pr 99.5 1.4E-14 3E-19 144.2 8.9 101 55-156 110-214 (412)
61 TIGR00390 hslU ATP-dependent p 99.5 4.8E-14 1E-18 141.3 11.9 152 55-212 49-342 (441)
62 PRK06893 DNA replication initi 99.5 2.4E-14 5.3E-19 130.5 8.8 143 55-236 41-196 (229)
63 PRK05201 hslU ATP-dependent pr 99.5 5.7E-14 1.2E-18 140.8 11.5 153 54-212 51-344 (443)
64 PHA02544 44 clamp loader, smal 99.5 9.8E-14 2.1E-18 129.8 12.2 146 55-234 45-200 (316)
65 TIGR00362 DnaA chromosomal rep 99.5 5.8E-14 1.3E-18 137.2 9.1 159 55-244 138-311 (405)
66 TIGR00382 clpX endopeptidase C 99.5 8.2E-14 1.8E-18 138.9 9.1 100 55-155 118-221 (413)
67 KOG0735 AAA+-type ATPase [Post 99.5 1.1E-13 2.4E-18 144.8 10.5 168 37-220 414-590 (952)
68 PRK13342 recombination factor 99.5 8.7E-13 1.9E-17 130.0 15.7 143 55-235 38-188 (413)
69 PRK12402 replication factor C 99.5 5.4E-13 1.2E-17 124.7 12.7 153 55-235 38-218 (337)
70 PRK00149 dnaA chromosomal repl 99.5 1.3E-13 2.9E-18 137.0 8.9 159 55-244 150-323 (450)
71 PF07728 AAA_5: AAA domain (dy 99.5 1.1E-14 2.4E-19 120.8 0.6 119 56-196 2-139 (139)
72 TIGR02928 orc1/cdc6 family rep 99.4 1.1E-12 2.4E-17 124.6 12.0 137 55-217 42-213 (365)
73 PRK00411 cdc6 cell division co 99.4 1.1E-12 2.4E-17 126.1 11.4 154 55-231 57-239 (394)
74 PRK14086 dnaA chromosomal repl 99.4 5.8E-13 1.2E-17 138.5 10.0 151 55-236 316-481 (617)
75 smart00382 AAA ATPases associa 99.4 1.3E-12 2.7E-17 101.9 9.3 124 55-202 4-144 (148)
76 PRK14962 DNA polymerase III su 99.4 2.8E-12 6.2E-17 129.6 13.4 146 55-235 38-210 (472)
77 cd00009 AAA The AAA+ (ATPases 99.4 1.1E-12 2.3E-17 104.0 7.9 122 55-203 21-150 (151)
78 PLN03025 replication factor C 99.4 5E-12 1.1E-16 120.2 12.7 146 56-235 37-192 (319)
79 COG2256 MGS1 ATPase related to 99.4 4.7E-12 1E-16 126.0 12.5 122 55-214 50-174 (436)
80 KOG2004 Mitochondrial ATP-depe 99.4 1.9E-12 4.2E-17 135.8 10.2 144 55-217 440-597 (906)
81 PRK11034 clpA ATP-dependent Cl 99.4 1.3E-12 2.8E-17 138.7 8.6 142 54-216 489-666 (758)
82 PRK12422 chromosomal replicati 99.3 2.7E-12 5.9E-17 128.8 9.5 161 55-246 143-316 (445)
83 COG0466 Lon ATP-dependent Lon 99.3 2.4E-12 5.2E-17 135.0 9.4 144 55-216 352-508 (782)
84 PRK13341 recombination factor 99.3 8.3E-12 1.8E-16 132.1 12.4 169 27-235 18-209 (725)
85 PRK07940 DNA polymerase III su 99.3 9.5E-12 2.1E-16 123.3 11.9 151 54-240 37-213 (394)
86 PF07724 AAA_2: AAA domain (Cd 99.3 6.9E-13 1.5E-17 117.3 3.4 125 56-187 6-134 (171)
87 PRK14956 DNA polymerase III su 99.3 1.1E-11 2.4E-16 126.0 12.6 166 31-231 9-210 (484)
88 PRK14088 dnaA chromosomal repl 99.3 3.1E-12 6.8E-17 127.8 7.9 151 55-236 132-298 (440)
89 PRK08727 hypothetical protein; 99.3 1.3E-11 2.7E-16 113.2 10.5 141 55-235 43-196 (233)
90 TIGR01650 PD_CobS cobaltochela 99.3 8.4E-12 1.8E-16 121.5 9.7 145 55-217 66-234 (327)
91 TIGR02639 ClpA ATP-dependent C 99.3 1.4E-11 3.1E-16 129.7 11.7 139 54-217 485-663 (731)
92 PTZ00112 origin recognition co 99.3 1.8E-11 3.9E-16 131.6 12.2 151 55-231 783-966 (1164)
93 PRK11331 5-methylcytosine-spec 99.3 1.2E-11 2.6E-16 125.0 9.4 139 43-197 174-351 (459)
94 PRK08084 DNA replication initi 99.3 2E-11 4.2E-16 112.0 10.0 143 55-236 47-202 (235)
95 PRK14970 DNA polymerase III su 99.3 4.4E-11 9.5E-16 115.2 12.2 152 55-235 41-201 (367)
96 PRK14961 DNA polymerase III su 99.3 5.1E-11 1.1E-15 115.8 12.6 164 37-235 13-212 (363)
97 TIGR03420 DnaA_homol_Hda DnaA 99.3 2.9E-11 6.4E-16 107.3 9.7 148 55-240 40-198 (226)
98 PRK05563 DNA polymerase III su 99.2 1E-10 2.3E-15 120.4 13.5 170 31-235 7-212 (559)
99 PRK12323 DNA polymerase III su 99.2 6.4E-11 1.4E-15 124.3 11.9 171 31-236 7-218 (700)
100 PRK06645 DNA polymerase III su 99.2 1E-10 2.3E-15 119.5 13.1 176 31-235 12-221 (507)
101 PRK14960 DNA polymerase III su 99.2 9.1E-11 2E-15 123.3 12.7 170 31-235 6-211 (702)
102 TIGR02397 dnaX_nterm DNA polym 99.2 9.3E-11 2E-15 110.9 11.7 146 55-235 38-210 (355)
103 PRK14087 dnaA chromosomal repl 99.2 3.1E-11 6.7E-16 121.2 8.8 161 55-244 143-320 (450)
104 PRK00440 rfc replication facto 99.2 1.8E-10 3.9E-15 106.8 13.1 146 56-235 41-195 (319)
105 TIGR02903 spore_lon_C ATP-depe 99.2 1.1E-10 2.4E-15 121.4 12.8 162 55-234 177-385 (615)
106 PRK07003 DNA polymerase III su 99.2 1.4E-10 3.1E-15 123.3 13.5 169 32-235 8-212 (830)
107 TIGR00678 holB DNA polymerase 99.2 1.8E-10 4E-15 100.9 11.7 143 55-235 16-183 (188)
108 TIGR02902 spore_lonB ATP-depen 99.2 8.4E-11 1.8E-15 120.2 11.1 157 55-230 88-292 (531)
109 PRK14963 DNA polymerase III su 99.2 2.6E-10 5.6E-15 116.4 13.4 144 55-233 38-207 (504)
110 COG0714 MoxR-like ATPases [Gen 99.2 6.9E-11 1.5E-15 112.9 8.0 145 55-216 45-203 (329)
111 PRK08691 DNA polymerase III su 99.2 2.3E-10 5E-15 120.7 12.4 152 55-235 40-212 (709)
112 PRK14958 DNA polymerase III su 99.2 2.6E-10 5.6E-15 116.4 12.1 170 31-235 7-212 (509)
113 PRK05642 DNA replication initi 99.1 3E-10 6.4E-15 104.4 10.8 141 55-235 47-200 (234)
114 COG2255 RuvB Holliday junction 99.1 3.7E-10 8.1E-15 108.9 11.7 156 54-236 53-219 (332)
115 PRK06620 hypothetical protein; 99.1 3E-10 6.6E-15 103.5 9.3 138 55-244 46-190 (214)
116 PRK14949 DNA polymerase III su 99.1 5.6E-10 1.2E-14 120.4 12.6 173 32-235 8-212 (944)
117 PRK08903 DnaA regulatory inact 99.1 5.4E-10 1.2E-14 100.4 10.6 140 55-239 44-195 (227)
118 PHA02244 ATPase-like protein 99.1 4E-10 8.6E-15 111.8 9.8 120 55-198 121-255 (383)
119 PF00308 Bac_DnaA: Bacterial d 99.1 8.2E-11 1.8E-15 107.3 4.3 154 55-244 36-209 (219)
120 PRK05896 DNA polymerase III su 99.1 9E-10 2E-14 114.7 12.2 170 31-235 7-212 (605)
121 PRK07994 DNA polymerase III su 99.1 1.5E-09 3.1E-14 114.0 13.3 169 32-235 8-212 (647)
122 PRK14969 DNA polymerase III su 99.1 1.1E-09 2.4E-14 112.2 12.0 165 36-235 12-212 (527)
123 PRK14965 DNA polymerase III su 99.1 1.1E-09 2.4E-14 113.1 12.1 170 31-235 7-212 (576)
124 PRK07764 DNA polymerase III su 99.1 1.6E-09 3.5E-14 116.4 13.3 169 32-235 7-213 (824)
125 KOG1969 DNA replication checkp 99.0 1.5E-09 3.2E-14 114.6 12.5 157 55-235 328-502 (877)
126 COG1219 ClpX ATP-dependent pro 99.0 6.2E-10 1.4E-14 109.0 9.0 101 55-155 99-202 (408)
127 PRK14953 DNA polymerase III su 99.0 1.8E-09 3.9E-14 109.8 12.5 152 55-235 40-212 (486)
128 PRK06305 DNA polymerase III su 99.0 2.4E-09 5.3E-14 107.7 13.3 146 55-235 41-214 (451)
129 PRK14959 DNA polymerase III su 99.0 1.9E-09 4.1E-14 112.7 12.7 146 55-235 40-212 (624)
130 PRK14951 DNA polymerase III su 99.0 2.8E-09 6.1E-14 111.4 13.0 166 35-235 11-217 (618)
131 KOG0741 AAA+-type ATPase [Post 99.0 7.7E-10 1.7E-14 113.8 8.2 139 55-222 540-689 (744)
132 PRK14957 DNA polymerase III su 99.0 4.5E-09 9.8E-14 108.5 13.8 146 55-235 40-212 (546)
133 PRK07133 DNA polymerase III su 99.0 2.4E-09 5.3E-14 113.5 12.1 176 31-235 9-211 (725)
134 TIGR03345 VI_ClpV1 type VI sec 99.0 1.1E-09 2.4E-14 117.8 9.4 110 54-185 597-721 (852)
135 PRK06647 DNA polymerase III su 99.0 3.5E-09 7.5E-14 109.5 12.7 170 31-235 7-212 (563)
136 PRK09087 hypothetical protein; 99.0 2.2E-09 4.9E-14 98.6 9.4 132 56-236 47-188 (226)
137 PRK14948 DNA polymerase III su 99.0 4.6E-09 1E-13 109.7 12.9 152 55-235 40-214 (620)
138 PRK14964 DNA polymerase III su 99.0 4.2E-09 9.1E-14 107.5 12.2 146 55-235 37-209 (491)
139 PRK08116 hypothetical protein; 99.0 7.2E-10 1.6E-14 104.3 6.2 99 55-183 116-221 (268)
140 KOG0745 Putative ATP-dependent 99.0 1.8E-09 3.9E-14 109.1 9.1 141 55-200 228-380 (564)
141 TIGR03346 chaperone_ClpB ATP-d 99.0 7.8E-09 1.7E-13 111.1 14.6 156 55-231 597-802 (852)
142 KOG2028 ATPase related to the 98.9 1.3E-09 2.8E-14 108.6 7.0 68 55-129 164-234 (554)
143 CHL00095 clpC Clp protease ATP 98.9 2.7E-09 5.8E-14 114.1 9.6 110 54-184 540-663 (821)
144 PRK14950 DNA polymerase III su 98.9 1.1E-08 2.4E-13 105.8 13.6 172 35-235 11-213 (585)
145 PRK12377 putative replication 98.9 2.2E-09 4.8E-14 100.6 7.5 98 55-183 103-206 (248)
146 PRK14955 DNA polymerase III su 98.9 9.3E-09 2E-13 101.3 11.9 151 55-235 40-220 (397)
147 PRK14952 DNA polymerase III su 98.9 1.3E-08 2.8E-13 105.9 13.0 164 31-229 4-205 (584)
148 PRK07952 DNA replication prote 98.9 1.4E-09 3.1E-14 101.7 4.9 99 55-183 101-205 (244)
149 PRK08181 transposase; Validate 98.9 1.2E-09 2.7E-14 103.4 4.3 98 55-183 108-209 (269)
150 KOG0989 Replication factor C, 98.9 5.5E-09 1.2E-13 101.6 8.7 142 55-230 59-217 (346)
151 PRK10865 protein disaggregatio 98.9 8.5E-09 1.8E-13 111.1 9.8 141 55-216 600-779 (857)
152 PRK06921 hypothetical protein; 98.8 6.9E-09 1.5E-13 97.7 7.7 66 55-128 119-188 (266)
153 PRK06835 DNA replication prote 98.8 4.7E-09 1E-13 102.1 6.6 99 55-183 185-289 (329)
154 COG0470 HolB ATPase involved i 98.8 2.6E-08 5.6E-13 92.3 11.2 115 55-203 26-167 (325)
155 COG0542 clpA ATP-binding subun 98.8 2.5E-08 5.5E-13 106.4 10.7 130 58-215 196-345 (786)
156 PRK14954 DNA polymerase III su 98.8 7.1E-08 1.5E-12 101.0 13.1 151 55-235 40-220 (620)
157 PRK06526 transposase; Provisio 98.8 5.3E-09 1.1E-13 98.1 4.2 69 55-130 100-172 (254)
158 PRK09111 DNA polymerase III su 98.8 7.2E-08 1.6E-12 100.6 12.9 152 55-235 48-225 (598)
159 cd01120 RecA-like_NTPases RecA 98.8 4.7E-08 1E-12 80.1 8.9 72 55-131 1-99 (165)
160 PF07726 AAA_3: ATPase family 98.7 5.5E-10 1.2E-14 96.4 -3.1 108 56-184 2-114 (131)
161 TIGR00602 rad24 checkpoint pro 98.7 8.2E-08 1.8E-12 100.9 11.8 156 55-235 112-315 (637)
162 PRK09183 transposase/IS protei 98.7 9.3E-09 2E-13 96.3 4.1 70 55-130 104-177 (259)
163 PRK13407 bchI magnesium chelat 98.7 1.8E-08 3.9E-13 98.3 6.2 81 119-215 130-215 (334)
164 COG1474 CDC6 Cdc6-related prot 98.7 6.5E-08 1.4E-12 95.4 9.0 135 55-215 44-202 (366)
165 PRK08451 DNA polymerase III su 98.7 2.3E-07 5E-12 95.8 13.1 146 55-235 38-210 (535)
166 TIGR03015 pepcterm_ATPase puta 98.7 4E-07 8.7E-12 82.9 12.7 156 55-237 45-232 (269)
167 PRK11388 DNA-binding transcrip 98.6 2.8E-08 6.2E-13 102.8 5.7 151 55-231 350-533 (638)
168 PF13401 AAA_22: AAA domain; P 98.6 1E-07 2.3E-12 77.2 7.7 97 55-182 6-125 (131)
169 PRK04132 replication factor C 98.6 3.7E-07 8E-12 98.6 14.1 144 58-235 569-723 (846)
170 PRK13531 regulatory ATPase Rav 98.6 1.1E-07 2.4E-12 97.3 8.7 154 55-235 41-221 (498)
171 PF05673 DUF815: Protein of un 98.6 1.1E-06 2.4E-11 83.2 14.4 142 55-230 54-223 (249)
172 PRK08939 primosomal protein Dn 98.6 1.3E-07 2.7E-12 91.1 8.1 64 55-129 158-229 (306)
173 COG1220 HslU ATP-dependent pro 98.6 4.3E-07 9.2E-12 90.0 11.6 90 117-212 250-345 (444)
174 TIGR02974 phageshock_pspF psp 98.6 2.5E-07 5.5E-12 89.5 9.9 131 55-210 24-177 (329)
175 PRK07471 DNA polymerase III su 98.6 5.3E-07 1.1E-11 88.9 12.2 133 55-216 43-213 (365)
176 TIGR01817 nifA Nif-specific re 98.6 2.3E-07 4.9E-12 94.4 9.5 152 55-231 221-407 (534)
177 PRK09112 DNA polymerase III su 98.6 1.2E-06 2.6E-11 85.9 14.2 152 55-235 47-232 (351)
178 smart00350 MCM minichromosome 98.6 4.8E-08 1E-12 99.5 4.3 135 56-216 239-400 (509)
179 TIGR02031 BchD-ChlD magnesium 98.6 1.6E-07 3.5E-12 97.6 8.2 147 48-216 12-174 (589)
180 TIGR02442 Cob-chelat-sub cobal 98.5 8.7E-08 1.9E-12 100.1 5.9 141 55-214 27-212 (633)
181 PRK11608 pspF phage shock prot 98.5 2.2E-07 4.8E-12 89.5 8.2 130 55-210 31-184 (326)
182 PF01695 IstB_IS21: IstB-like 98.5 2.7E-08 5.9E-13 88.4 1.1 67 55-128 49-119 (178)
183 PF00910 RNA_helicase: RNA hel 98.5 2.1E-07 4.5E-12 75.7 6.2 105 56-181 1-106 (107)
184 PRK05564 DNA polymerase III su 98.5 2.1E-06 4.5E-11 81.6 13.4 150 55-235 28-182 (313)
185 COG0593 DnaA ATPase involved i 98.5 6.5E-07 1.4E-11 89.9 10.3 158 55-244 115-287 (408)
186 PRK05022 anaerobic nitric oxid 98.5 3.2E-07 7E-12 93.2 8.1 130 55-210 212-365 (509)
187 PRK14971 DNA polymerase III su 98.5 1.9E-06 4.1E-11 90.3 13.6 146 55-235 41-214 (614)
188 PRK05707 DNA polymerase III su 98.5 1.9E-06 4.2E-11 83.7 12.6 132 55-215 24-177 (328)
189 PF00158 Sigma54_activat: Sigm 98.4 3E-07 6.6E-12 81.2 5.8 118 55-198 24-156 (168)
190 PF05729 NACHT: NACHT domain 98.4 3.1E-06 6.8E-11 70.1 10.3 141 55-218 2-165 (166)
191 PRK15429 formate hydrogenlyase 98.4 7.9E-07 1.7E-11 93.3 8.2 129 55-210 401-554 (686)
192 PRK10820 DNA-binding transcrip 98.4 1.9E-06 4.1E-11 88.1 10.4 151 55-231 229-416 (520)
193 TIGR02030 BchI-ChlI magnesium 98.4 3.3E-07 7.1E-12 89.6 4.5 82 118-215 132-218 (337)
194 PRK15115 response regulator Gl 98.3 1.3E-06 2.9E-11 85.6 8.1 132 55-210 159-312 (444)
195 PRK06964 DNA polymerase III su 98.3 4E-06 8.6E-11 82.3 11.2 131 55-214 23-202 (342)
196 CHL00081 chlI Mg-protoporyphyr 98.3 7.1E-07 1.5E-11 87.9 6.0 82 118-215 145-231 (350)
197 PF06068 TIP49: TIP49 C-termin 98.3 4.5E-07 9.9E-12 90.4 3.6 54 55-109 52-107 (398)
198 PRK08058 DNA polymerase III su 98.3 5.9E-06 1.3E-10 79.8 11.2 125 55-213 30-179 (329)
199 PRK15424 propionate catabolism 98.2 8.1E-07 1.7E-11 91.8 4.4 130 55-210 244-406 (538)
200 COG1484 DnaC DNA replication p 98.2 2E-06 4.3E-11 80.7 5.6 66 55-128 107-178 (254)
201 PRK11361 acetoacetate metaboli 98.2 1.4E-06 3E-11 85.5 4.8 131 55-210 168-321 (457)
202 TIGR02329 propionate_PrpR prop 98.2 3.4E-06 7.3E-11 87.0 7.6 130 55-210 237-391 (526)
203 PF12775 AAA_7: P-loop contain 98.2 3.5E-07 7.6E-12 86.6 0.2 142 55-217 35-194 (272)
204 PRK10923 glnG nitrogen regulat 98.2 5E-06 1.1E-10 82.3 7.8 131 55-210 163-316 (469)
205 PRK10365 transcriptional regul 98.2 7.5E-06 1.6E-10 79.9 8.9 132 55-210 164-317 (441)
206 PF13173 AAA_14: AAA domain 98.2 1.8E-06 3.9E-11 71.7 3.9 109 55-198 4-116 (128)
207 COG1224 TIP49 DNA helicase TIP 98.2 1.8E-06 3.9E-11 86.1 4.5 54 55-109 67-122 (450)
208 smart00763 AAA_PrkA PrkA AAA d 98.1 2.1E-06 4.5E-11 85.1 4.8 54 55-108 80-144 (361)
209 COG0542 clpA ATP-binding subun 98.1 2.7E-06 5.8E-11 91.2 6.0 107 55-183 523-644 (786)
210 TIGR02915 PEP_resp_reg putativ 98.1 1.1E-05 2.3E-10 79.4 9.5 131 55-210 164-317 (445)
211 PRK09376 rho transcription ter 98.1 5.2E-06 1.1E-10 83.6 7.3 75 55-130 171-269 (416)
212 cd01128 rho_factor Transcripti 98.1 6.3E-06 1.4E-10 77.5 7.3 74 55-129 18-115 (249)
213 KOG1514 Origin recognition com 98.1 6.5E-06 1.4E-10 87.2 7.9 138 55-219 424-592 (767)
214 TIGR01818 ntrC nitrogen regula 98.1 7.7E-06 1.7E-10 80.6 8.0 130 55-209 159-311 (463)
215 PRK07399 DNA polymerase III su 98.1 1.6E-05 3.5E-10 76.8 10.0 155 55-239 28-220 (314)
216 PF03969 AFG1_ATPase: AFG1-lik 98.1 2.1E-06 4.5E-11 84.8 3.7 101 54-187 63-173 (362)
217 PF01637 Arch_ATPase: Archaeal 98.1 3.8E-06 8.2E-11 73.1 4.9 151 55-231 22-222 (234)
218 PF13207 AAA_17: AAA domain; P 98.1 2.2E-06 4.7E-11 69.1 2.6 32 55-86 1-32 (121)
219 PF13671 AAA_33: AAA domain; P 98.1 5.3E-06 1.1E-10 68.4 4.7 38 56-95 2-39 (143)
220 PRK08699 DNA polymerase III su 98.0 2.6E-05 5.7E-10 75.8 10.0 130 54-213 22-182 (325)
221 cd01124 KaiC KaiC is a circadi 98.0 2.1E-05 4.5E-10 67.6 8.3 32 55-86 1-35 (187)
222 PF13191 AAA_16: AAA ATPase do 98.0 7.2E-06 1.6E-10 69.7 5.2 36 54-89 25-63 (185)
223 TIGR00368 Mg chelatase-related 98.0 5.3E-06 1.1E-10 85.1 5.1 23 55-77 213-235 (499)
224 PLN03210 Resistant to P. syrin 98.0 3.3E-05 7.1E-10 85.7 11.5 27 55-81 209-235 (1153)
225 PF14532 Sigma54_activ_2: Sigm 98.0 5.4E-06 1.2E-10 69.7 4.1 57 55-130 23-82 (138)
226 PRK00131 aroK shikimate kinase 98.0 9.8E-06 2.1E-10 68.4 5.1 41 55-97 6-46 (175)
227 COG2812 DnaX DNA polymerase II 98.0 6.9E-05 1.5E-09 77.5 11.8 176 31-235 7-212 (515)
228 TIGR01359 UMP_CMP_kin_fam UMP- 97.9 1.1E-05 2.4E-10 69.7 4.9 36 56-93 2-37 (183)
229 PRK13947 shikimate kinase; Pro 97.9 2.1E-05 4.5E-10 67.3 6.5 41 56-98 4-44 (171)
230 TIGR02237 recomb_radB DNA repa 97.9 3.9E-05 8.4E-10 68.0 8.4 34 55-88 14-50 (209)
231 PRK14532 adenylate kinase; Pro 97.9 5.6E-06 1.2E-10 72.3 2.9 36 56-93 3-38 (188)
232 cd02021 GntK Gluconate kinase 97.9 2.4E-05 5.1E-10 65.7 6.3 35 55-91 1-35 (150)
233 PRK08769 DNA polymerase III su 97.9 8.1E-05 1.7E-09 72.6 10.5 153 55-240 28-208 (319)
234 cd03283 ABC_MutS-like MutS-lik 97.9 5.5E-05 1.2E-09 68.3 8.6 29 45-75 19-47 (199)
235 TIGR00764 lon_rel lon-related 97.9 7.4E-06 1.6E-10 85.7 2.9 58 55-112 39-106 (608)
236 PHA00729 NTP-binding motif con 97.8 2.3E-05 4.9E-10 73.3 5.3 27 55-81 19-45 (226)
237 PF13177 DNA_pol3_delta2: DNA 97.8 3E-05 6.6E-10 67.7 5.7 108 55-192 21-151 (162)
238 cd03238 ABC_UvrA The excision 97.8 7.6E-05 1.6E-09 66.6 8.3 74 55-131 23-121 (176)
239 TIGR01360 aden_kin_iso1 adenyl 97.8 8.9E-06 1.9E-10 70.0 2.3 36 55-92 5-40 (188)
240 cd00464 SK Shikimate kinase (S 97.8 1.8E-05 3.9E-10 66.0 4.0 40 56-97 2-41 (154)
241 cd03243 ABC_MutS_homologs The 97.8 6.9E-05 1.5E-09 66.8 7.6 110 54-190 30-158 (202)
242 PRK08118 topology modulation p 97.8 4.3E-05 9.2E-10 67.1 5.7 45 56-100 4-48 (167)
243 PRK13695 putative NTPase; Prov 97.8 0.00011 2.3E-09 63.9 8.2 22 56-77 3-24 (174)
244 PRK11823 DNA repair protein Ra 97.8 5.4E-05 1.2E-09 76.5 6.9 91 32-130 62-169 (446)
245 PRK06762 hypothetical protein; 97.7 2.7E-05 5.8E-10 66.6 3.8 40 55-94 4-43 (166)
246 COG1221 PspF Transcriptional r 97.7 2.4E-05 5.2E-10 78.6 4.0 128 55-210 103-254 (403)
247 cd00227 CPT Chloramphenicol (C 97.7 3.6E-05 7.8E-10 67.0 4.5 33 55-87 4-36 (175)
248 KOG1968 Replication factor C, 97.7 0.00012 2.6E-09 79.8 9.3 150 55-233 359-521 (871)
249 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.7 2.2E-05 4.8E-10 66.9 2.8 71 55-130 28-101 (144)
250 PHA02530 pseT polynucleotide k 97.7 5.8E-05 1.2E-09 70.4 5.7 36 55-91 4-39 (300)
251 TIGR02858 spore_III_AA stage I 97.7 3.4E-05 7.5E-10 73.4 4.2 25 55-79 113-137 (270)
252 cd03216 ABC_Carb_Monos_I This 97.7 0.00011 2.4E-09 63.6 7.0 73 55-130 28-113 (163)
253 PHA02774 E1; Provisional 97.7 0.00013 2.9E-09 76.5 8.3 95 55-181 436-531 (613)
254 PRK03839 putative kinase; Prov 97.7 2.5E-05 5.3E-10 67.9 2.6 30 56-85 3-32 (180)
255 PF03215 Rad17: Rad17 cell cyc 97.7 2.2E-05 4.8E-10 81.0 2.6 30 55-84 47-76 (519)
256 cd02027 APSK Adenosine 5'-phos 97.7 8.1E-05 1.8E-09 63.9 5.6 66 56-124 2-77 (149)
257 PRK06871 DNA polymerase III su 97.7 0.00072 1.6E-08 66.2 12.8 132 55-215 26-178 (325)
258 cd01131 PilT Pilus retraction 97.6 6.4E-05 1.4E-09 67.4 5.0 67 55-126 3-83 (198)
259 cd03280 ABC_MutS2 MutS2 homolo 97.6 0.00021 4.6E-09 63.7 8.3 73 55-131 30-122 (200)
260 TIGR01313 therm_gnt_kin carboh 97.6 0.00015 3.2E-09 61.9 6.8 32 56-89 1-32 (163)
261 PF01443 Viral_helicase1: Vira 97.6 2E-05 4.3E-10 70.1 1.2 72 56-129 1-74 (234)
262 COG0563 Adk Adenylate kinase a 97.6 3.8E-05 8.2E-10 68.8 2.9 50 56-111 3-52 (178)
263 cd02020 CMPK Cytidine monophos 97.6 3.7E-05 8E-10 63.3 2.6 31 55-85 1-31 (147)
264 PTZ00111 DNA replication licen 97.6 0.00019 4.1E-09 78.5 8.5 130 55-207 494-648 (915)
265 PRK07261 topology modulation p 97.6 0.00014 3.1E-09 63.8 6.2 42 56-97 3-44 (171)
266 PRK14526 adenylate kinase; Pro 97.6 5.2E-05 1.1E-09 69.5 3.4 35 56-92 3-37 (211)
267 PRK09862 putative ATP-dependen 97.6 6.7E-05 1.5E-09 77.4 4.5 23 55-77 212-234 (506)
268 PRK14531 adenylate kinase; Pro 97.6 4.9E-05 1.1E-09 66.9 3.0 35 55-91 4-38 (183)
269 TIGR00767 rho transcription te 97.6 0.00018 3.8E-09 72.8 7.2 75 55-130 170-268 (415)
270 TIGR03574 selen_PSTK L-seryl-t 97.6 0.0001 2.3E-09 67.7 5.1 68 56-125 2-75 (249)
271 cd01121 Sms Sms (bacterial rad 97.5 0.00014 2.9E-09 72.3 6.2 90 33-130 65-171 (372)
272 PF00406 ADK: Adenylate kinase 97.5 2.7E-05 5.8E-10 66.0 1.1 34 58-93 1-34 (151)
273 PRK08233 hypothetical protein; 97.5 0.00021 4.5E-09 61.2 6.3 30 55-84 5-35 (182)
274 PRK13946 shikimate kinase; Pro 97.5 9.8E-05 2.1E-09 65.1 4.5 37 49-85 6-42 (184)
275 cd01428 ADK Adenylate kinase ( 97.5 6.2E-05 1.3E-09 65.2 3.0 35 56-92 2-36 (194)
276 PRK09361 radB DNA repair and r 97.5 0.00015 3.3E-09 65.2 5.6 33 55-87 25-60 (225)
277 KOG1942 DNA helicase, TBP-inte 97.5 5.9E-05 1.3E-09 74.3 3.1 54 55-109 66-121 (456)
278 PF13521 AAA_28: AAA domain; P 97.5 6.9E-05 1.5E-09 64.2 2.9 36 56-92 2-37 (163)
279 PRK03731 aroL shikimate kinase 97.5 0.00015 3.3E-09 62.3 5.0 30 55-84 4-33 (171)
280 cd00267 ABC_ATPase ABC (ATP-bi 97.5 0.00021 4.6E-09 60.8 5.8 73 54-130 26-111 (157)
281 PLN02200 adenylate kinase fami 97.5 5.7E-05 1.2E-09 70.0 2.5 37 55-93 45-81 (234)
282 cd03222 ABC_RNaseL_inhibitor T 97.5 0.00014 3E-09 65.0 4.8 72 55-130 27-102 (177)
283 PRK06547 hypothetical protein; 97.5 0.00012 2.5E-09 65.1 4.3 41 55-97 17-57 (172)
284 PRK00625 shikimate kinase; Pro 97.5 9E-05 1.9E-09 65.9 3.5 30 56-85 3-32 (173)
285 PRK06090 DNA polymerase III su 97.5 0.0018 3.8E-08 63.4 12.7 153 55-240 27-201 (319)
286 PRK13949 shikimate kinase; Pro 97.5 0.00016 3.4E-09 63.6 5.0 31 55-85 3-33 (169)
287 TIGR01618 phage_P_loop phage n 97.5 0.00015 3.3E-09 67.4 5.0 70 55-129 14-93 (220)
288 PRK00279 adk adenylate kinase; 97.5 0.00016 3.4E-09 65.1 5.0 35 56-92 3-37 (215)
289 PRK02496 adk adenylate kinase; 97.5 8.1E-05 1.8E-09 64.9 3.0 33 56-90 4-36 (184)
290 PF00931 NB-ARC: NB-ARC domain 97.5 0.00028 6E-09 64.7 6.6 149 55-240 21-199 (287)
291 TIGR01526 nadR_NMN_Atrans nico 97.4 0.00013 2.8E-09 70.8 4.4 78 48-128 157-242 (325)
292 PRK08099 bifunctional DNA-bind 97.4 0.00016 3.4E-09 72.4 5.1 46 46-91 208-257 (399)
293 PRK12608 transcription termina 97.4 0.00025 5.4E-09 71.0 6.3 74 55-129 135-232 (380)
294 cd03228 ABCC_MRP_Like The MRP 97.4 0.00046 9.9E-09 59.9 7.3 24 55-78 30-53 (171)
295 PRK07993 DNA polymerase III su 97.4 0.0011 2.5E-08 64.7 10.8 142 55-228 26-189 (334)
296 cd03223 ABCD_peroxisomal_ALDP 97.4 0.00066 1.4E-08 59.0 8.1 73 55-130 29-122 (166)
297 TIGR02012 tigrfam_recA protein 97.4 0.00066 1.4E-08 66.5 8.8 93 31-132 35-148 (321)
298 PF12774 AAA_6: Hydrolytic ATP 97.4 0.0011 2.5E-08 61.7 10.1 135 57-212 36-176 (231)
299 cd00983 recA RecA is a bacter 97.4 0.00085 1.8E-08 65.8 9.6 96 30-133 34-149 (325)
300 cd01394 radB RadB. The archaea 97.4 0.00043 9.3E-09 61.8 6.9 34 54-87 20-56 (218)
301 PF05621 TniB: Bacterial TniB 97.4 0.0013 2.9E-08 64.1 10.7 186 55-275 63-286 (302)
302 smart00534 MUTSac ATPase domai 97.4 0.00079 1.7E-08 59.6 8.4 71 56-130 2-91 (185)
303 TIGR01420 pilT_fam pilus retra 97.4 0.00026 5.7E-09 68.8 5.8 74 48-126 110-204 (343)
304 cd03227 ABC_Class2 ABC-type Cl 97.4 0.00037 8E-09 60.3 6.1 107 55-187 23-145 (162)
305 COG1239 ChlI Mg-chelatase subu 97.4 0.0015 3.3E-08 66.2 11.2 142 55-217 40-233 (423)
306 cd03282 ABC_MSH4_euk MutS4 hom 97.4 0.00052 1.1E-08 62.5 7.3 27 54-80 30-61 (204)
307 PRK01184 hypothetical protein; 97.4 0.0001 2.2E-09 64.2 2.5 35 55-92 3-37 (184)
308 cd03246 ABCC_Protease_Secretio 97.4 0.00036 7.7E-09 60.7 5.9 72 55-130 30-127 (173)
309 PRK14530 adenylate kinase; Pro 97.4 0.00012 2.6E-09 65.9 3.0 38 55-94 5-42 (215)
310 KOG1970 Checkpoint RAD17-RFC c 97.3 0.00022 4.7E-09 74.4 4.9 31 55-85 112-142 (634)
311 PRK04040 adenylate kinase; Pro 97.3 0.00026 5.6E-09 63.6 4.8 34 55-90 4-39 (188)
312 cd03232 ABC_PDR_domain2 The pl 97.3 0.00069 1.5E-08 59.9 7.4 22 55-76 35-56 (192)
313 COG3829 RocR Transcriptional r 97.3 0.00019 4.2E-09 74.5 4.2 132 38-198 243-403 (560)
314 cd03214 ABC_Iron-Siderophores_ 97.3 0.00064 1.4E-08 59.5 6.9 73 55-130 27-128 (180)
315 KOG1051 Chaperone HSP104 and r 97.3 0.00069 1.5E-08 74.1 8.4 108 55-184 593-712 (898)
316 PRK06217 hypothetical protein; 97.3 0.00013 2.9E-09 64.0 2.5 31 55-85 3-33 (183)
317 TIGR01351 adk adenylate kinase 97.3 0.00015 3.2E-09 65.0 2.8 35 56-92 2-36 (210)
318 cd01393 recA_like RecA is a b 97.3 0.00086 1.9E-08 59.9 7.7 23 55-77 21-43 (226)
319 PRK04182 cytidylate kinase; Pr 97.3 0.00015 3.3E-09 61.8 2.6 29 55-83 2-30 (180)
320 cd01130 VirB11-like_ATPase Typ 97.3 0.00041 8.9E-09 61.3 5.4 68 55-127 27-110 (186)
321 PRK04296 thymidine kinase; Pro 97.3 0.0005 1.1E-08 61.4 6.0 69 55-127 4-88 (190)
322 PRK14528 adenylate kinase; Pro 97.3 0.00018 3.9E-09 63.9 2.9 36 55-92 3-38 (186)
323 PF13086 AAA_11: AAA domain; P 97.3 0.00014 3E-09 63.2 2.1 23 55-77 19-41 (236)
324 PTZ00088 adenylate kinase 1; P 97.3 0.00019 4.1E-09 66.7 3.0 35 56-92 9-43 (229)
325 cd03247 ABCC_cytochrome_bd The 97.2 0.00093 2E-08 58.2 7.0 73 55-130 30-129 (178)
326 PRK13541 cytochrome c biogenes 97.2 0.00092 2E-08 59.1 7.1 23 55-77 28-50 (195)
327 cd03229 ABC_Class3 This class 97.2 0.00073 1.6E-08 59.0 6.4 24 55-78 28-51 (178)
328 PRK14527 adenylate kinase; Pro 97.2 0.00014 3.1E-09 64.1 1.9 37 55-93 8-44 (191)
329 PRK11607 potG putrescine trans 97.2 0.00047 1E-08 68.3 5.7 23 55-77 47-69 (377)
330 cd03213 ABCG_EPDR ABCG transpo 97.2 0.00075 1.6E-08 59.9 6.4 23 55-77 37-59 (194)
331 cd00984 DnaB_C DnaB helicase C 97.2 0.0019 4E-08 58.3 9.0 33 54-86 14-50 (242)
332 PRK06696 uridine kinase; Valid 97.2 0.00023 4.9E-09 64.7 3.1 37 55-91 24-63 (223)
333 cd03239 ABC_SMC_head The struc 97.2 0.0011 2.3E-08 58.9 7.2 77 55-131 24-130 (178)
334 cd03215 ABC_Carb_Monos_II This 97.2 0.00078 1.7E-08 59.0 6.2 24 55-78 28-51 (182)
335 COG1102 Cmk Cytidylate kinase 97.2 0.00024 5.3E-09 64.3 3.0 52 57-110 4-55 (179)
336 TIGR03263 guanyl_kin guanylate 97.2 0.00047 1E-08 59.4 4.6 27 55-81 3-29 (180)
337 TIGR02525 plasmid_TraJ plasmid 97.2 0.00057 1.2E-08 68.0 5.7 77 46-127 135-235 (372)
338 TIGR03740 galliderm_ABC gallid 97.2 0.001 2.3E-08 59.7 6.9 23 55-77 28-50 (223)
339 PRK13538 cytochrome c biogenes 97.2 0.0015 3.1E-08 58.2 7.7 23 55-77 29-51 (204)
340 cd03230 ABC_DR_subfamily_A Thi 97.2 0.00086 1.9E-08 58.3 5.9 23 55-77 28-50 (173)
341 cd03250 ABCC_MRP_domain1 Domai 97.2 0.0016 3.4E-08 57.8 7.7 24 55-78 33-56 (204)
342 TIGR02173 cyt_kin_arch cytidyl 97.2 0.00026 5.5E-09 60.0 2.6 29 55-83 2-30 (171)
343 PRK13948 shikimate kinase; Pro 97.1 0.00073 1.6E-08 60.8 5.5 40 55-96 12-51 (182)
344 PRK00889 adenylylsulfate kinas 97.1 0.00079 1.7E-08 58.3 5.5 33 55-87 6-41 (175)
345 COG2204 AtoC Response regulato 97.1 0.00083 1.8E-08 68.9 6.5 159 55-246 166-362 (464)
346 PF08433 KTI12: Chromatin asso 97.1 0.00082 1.8E-08 64.0 6.1 72 55-128 3-81 (270)
347 PRK06067 flagellar accessory p 97.1 0.00057 1.2E-08 62.1 4.8 75 55-130 27-133 (234)
348 COG4608 AppF ABC-type oligopep 97.1 0.00092 2E-08 64.2 6.3 73 55-130 41-140 (268)
349 PRK14730 coaE dephospho-CoA ki 97.1 0.00034 7.3E-09 63.0 3.1 49 55-105 3-54 (195)
350 cd00046 DEXDc DEAD-like helica 97.1 0.00041 9E-09 54.1 3.2 23 56-78 3-25 (144)
351 cd02022 DPCK Dephospho-coenzym 97.1 0.00039 8.4E-09 61.1 3.4 38 55-95 1-38 (179)
352 COG1116 TauB ABC-type nitrate/ 97.1 0.0006 1.3E-08 64.8 4.8 25 55-79 31-55 (248)
353 PRK13975 thymidylate kinase; P 97.1 0.00049 1.1E-08 60.1 3.9 27 56-82 5-31 (196)
354 PRK14529 adenylate kinase; Pro 97.1 0.00038 8.2E-09 64.8 3.3 38 56-95 3-40 (223)
355 COG2607 Predicted ATPase (AAA+ 97.1 0.0019 4E-08 62.1 7.9 132 55-222 87-245 (287)
356 PRK05537 bifunctional sulfate 97.1 0.00064 1.4E-08 71.0 5.2 72 55-132 394-476 (568)
357 PRK00300 gmk guanylate kinase; 97.1 0.0013 2.8E-08 57.9 6.5 24 55-78 7-30 (205)
358 cd03281 ABC_MSH5_euk MutS5 hom 97.1 0.0011 2.4E-08 60.5 6.2 114 54-191 30-162 (213)
359 PLN02674 adenylate kinase 97.1 0.00028 6E-09 66.6 2.2 37 55-93 33-69 (244)
360 cd03284 ABC_MutS1 MutS1 homolo 97.1 0.0014 3E-08 59.9 6.7 22 54-75 31-52 (216)
361 PRK05800 cobU adenosylcobinami 97.0 0.0018 4E-08 57.4 7.0 36 55-90 3-38 (170)
362 PRK08533 flagellar accessory p 97.0 0.00073 1.6E-08 62.3 4.5 32 55-86 26-60 (230)
363 PRK09544 znuC high-affinity zi 97.0 0.00092 2E-08 62.0 5.2 23 55-77 32-54 (251)
364 PRK15455 PrkA family serine pr 97.0 0.00038 8.3E-09 73.4 2.7 43 55-97 105-148 (644)
365 TIGR00455 apsK adenylylsulfate 97.0 0.0013 2.7E-08 57.6 5.6 36 55-90 20-58 (184)
366 cd03115 SRP The signal recogni 97.0 0.0021 4.6E-08 55.4 6.9 32 55-86 2-36 (173)
367 TIGR03881 KaiC_arch_4 KaiC dom 97.0 0.0056 1.2E-07 55.1 9.8 47 36-86 6-56 (229)
368 PF13245 AAA_19: Part of AAA d 97.0 0.00063 1.4E-08 53.1 3.2 32 56-87 13-51 (76)
369 PHA02624 large T antigen; Prov 97.0 0.0035 7.5E-08 66.5 9.2 127 55-205 433-563 (647)
370 KOG3347 Predicted nucleotide k 96.9 0.00048 1E-08 62.0 2.4 31 55-85 9-39 (176)
371 PRK03846 adenylylsulfate kinas 96.9 0.002 4.3E-08 57.4 6.3 58 55-112 26-93 (198)
372 cd02023 UMPK Uridine monophosp 96.9 0.00092 2E-08 59.0 4.1 36 55-90 1-37 (198)
373 TIGR02868 CydC thiol reductant 96.9 0.0026 5.5E-08 64.4 7.8 24 55-78 363-386 (529)
374 cd01123 Rad51_DMC1_radA Rad51_ 96.9 0.0026 5.6E-08 57.1 7.0 91 36-130 5-128 (235)
375 cd03217 ABC_FeS_Assembly ABC-t 96.9 0.0022 4.8E-08 57.1 6.6 22 55-76 28-49 (200)
376 cd01672 TMPK Thymidine monopho 96.9 0.0013 2.8E-08 56.4 4.9 46 56-106 3-51 (200)
377 cd02024 NRK1 Nicotinamide ribo 96.9 0.00056 1.2E-08 61.9 2.7 31 55-85 1-32 (187)
378 PRK09354 recA recombinase A; P 96.9 0.0035 7.5E-08 62.2 8.3 97 31-132 40-153 (349)
379 PF01745 IPT: Isopentenyl tran 96.9 0.00069 1.5E-08 63.8 3.2 66 53-128 1-66 (233)
380 cd01122 GP4d_helicase GP4d_hel 96.9 0.0049 1.1E-07 56.8 8.7 49 34-86 15-67 (271)
381 PRK05057 aroK shikimate kinase 96.9 0.0007 1.5E-08 59.5 3.0 32 55-86 6-37 (172)
382 PRK05480 uridine/cytidine kina 96.9 0.00083 1.8E-08 59.9 3.5 35 55-89 8-43 (209)
383 COG0703 AroK Shikimate kinase 96.9 0.001 2.2E-08 60.1 4.0 30 56-85 5-34 (172)
384 cd02019 NK Nucleoside/nucleoti 96.9 0.00074 1.6E-08 51.0 2.6 31 56-86 2-33 (69)
385 PRK14722 flhF flagellar biosyn 96.9 0.0018 4E-08 64.6 6.2 23 55-77 139-161 (374)
386 PRK13537 nodulation ABC transp 96.9 0.0019 4.1E-08 61.8 5.9 23 55-77 35-57 (306)
387 cd00071 GMPK Guanosine monopho 96.9 0.0035 7.6E-08 53.2 6.9 26 56-81 2-27 (137)
388 COG1618 Predicted nucleotide k 96.9 0.0037 8E-08 56.8 7.3 24 56-79 8-31 (179)
389 TIGR03877 thermo_KaiC_1 KaiC d 96.9 0.006 1.3E-07 56.0 8.9 47 36-86 7-57 (237)
390 PLN02459 probable adenylate ki 96.9 0.00065 1.4E-08 64.8 2.6 35 56-92 32-66 (261)
391 PRK10790 putative multidrug tr 96.8 0.0022 4.8E-08 65.8 6.7 25 55-79 369-393 (592)
392 TIGR00235 udk uridine kinase. 96.8 0.0007 1.5E-08 60.6 2.6 25 55-79 8-32 (207)
393 PF00485 PRK: Phosphoribulokin 96.8 0.00053 1.1E-08 60.8 1.8 25 55-79 1-25 (194)
394 PRK09825 idnK D-gluconate kina 96.8 0.00071 1.5E-08 60.0 2.6 33 55-89 5-37 (176)
395 PRK08356 hypothetical protein; 96.8 0.00082 1.8E-08 59.7 2.9 33 55-90 7-39 (195)
396 TIGR00152 dephospho-CoA kinase 96.8 0.00083 1.8E-08 59.1 2.9 49 55-105 1-52 (188)
397 PRK13657 cyclic beta-1,2-gluca 96.8 0.0021 4.6E-08 66.0 6.1 24 55-78 363-386 (588)
398 PRK11545 gntK gluconate kinase 96.8 0.00093 2E-08 58.3 3.1 24 59-82 1-24 (163)
399 cd00544 CobU Adenosylcobinamid 96.8 0.0063 1.4E-07 54.1 8.4 36 55-90 1-36 (169)
400 PRK12339 2-phosphoglycerate ki 96.8 0.00076 1.6E-08 61.3 2.6 34 55-90 5-38 (197)
401 PF01078 Mg_chelatase: Magnesi 96.8 0.00057 1.2E-08 63.3 1.7 23 55-77 24-46 (206)
402 PF06414 Zeta_toxin: Zeta toxi 96.8 0.0027 5.7E-08 56.6 6.0 38 55-92 17-55 (199)
403 PF06309 Torsin: Torsin; Inte 96.8 0.00071 1.5E-08 58.5 2.1 23 55-77 55-77 (127)
404 PRK08154 anaerobic benzoate ca 96.8 0.001 2.2E-08 63.9 3.3 31 55-85 135-165 (309)
405 PRK13764 ATPase; Provisional 96.8 0.0013 2.8E-08 69.4 4.3 36 44-79 241-283 (602)
406 PRK13808 adenylate kinase; Pro 96.8 0.00081 1.7E-08 66.3 2.5 35 56-92 3-37 (333)
407 COG1936 Predicted nucleotide k 96.8 0.00059 1.3E-08 62.1 1.4 32 56-90 3-34 (180)
408 TIGR03796 NHPM_micro_ABC1 NHPM 96.7 0.0028 6E-08 66.6 6.5 24 55-78 507-530 (710)
409 TIGR02782 TrbB_P P-type conjug 96.7 0.0021 4.5E-08 61.9 5.1 68 55-127 134-214 (299)
410 PRK11174 cysteine/glutathione 96.7 0.0022 4.7E-08 65.8 5.5 23 55-77 378-400 (588)
411 PF06745 KaiC: KaiC; InterPro 96.7 0.0092 2E-07 53.7 9.0 32 55-86 21-56 (226)
412 cd02028 UMPK_like Uridine mono 96.7 0.0012 2.5E-08 58.6 3.1 37 55-91 1-40 (179)
413 PRK10078 ribose 1,5-bisphospho 96.7 0.00093 2E-08 58.9 2.3 35 55-90 4-38 (186)
414 TIGR03878 thermo_KaiC_2 KaiC d 96.7 0.0089 1.9E-07 56.0 8.9 31 55-85 38-71 (259)
415 PF13238 AAA_18: AAA domain; P 96.7 0.001 2.2E-08 53.1 2.2 21 57-77 2-22 (129)
416 PRK14733 coaE dephospho-CoA ki 96.7 0.0015 3.3E-08 60.0 3.6 38 55-94 8-45 (204)
417 cd01673 dNK Deoxyribonucleosid 96.7 0.0024 5.1E-08 55.9 4.6 28 56-83 2-29 (193)
418 cd01125 repA Hexameric Replica 96.7 0.017 3.6E-07 52.9 10.2 20 57-76 5-24 (239)
419 cd03287 ABC_MSH3_euk MutS3 hom 96.6 0.0046 9.9E-08 57.3 6.5 21 55-75 33-53 (222)
420 TIGR00150 HI0065_YjeE ATPase, 96.6 0.0011 2.4E-08 57.4 2.2 26 55-80 24-49 (133)
421 TIGR02788 VirB11 P-type DNA tr 96.6 0.0023 5E-08 61.4 4.6 68 55-127 146-228 (308)
422 TIGR00416 sms DNA repair prote 96.6 0.0048 1E-07 62.8 7.0 89 34-130 78-183 (454)
423 cd02025 PanK Pantothenate kina 96.6 0.0013 2.8E-08 60.3 2.6 24 55-78 1-24 (220)
424 KOG2227 Pre-initiation complex 96.6 0.0053 1.1E-07 63.4 7.2 163 55-244 177-369 (529)
425 PRK00081 coaE dephospho-CoA ki 96.6 0.0018 3.9E-08 57.9 3.4 37 55-94 4-40 (194)
426 COG1485 Predicted ATPase [Gene 96.6 0.0083 1.8E-07 59.9 8.3 105 50-187 62-176 (367)
427 PRK09519 recA DNA recombinatio 96.6 0.0049 1.1E-07 66.9 7.2 94 31-133 40-154 (790)
428 TIGR00017 cmk cytidylate kinas 96.6 0.0014 3E-08 60.3 2.5 34 55-90 4-37 (217)
429 PF14516 AAA_35: AAA-like doma 96.6 0.008 1.7E-07 58.3 7.9 75 55-131 33-141 (331)
430 PF05707 Zot: Zonular occluden 96.6 0.0015 3.3E-08 58.2 2.7 121 55-201 2-142 (193)
431 PRK14731 coaE dephospho-CoA ki 96.5 0.0019 4.1E-08 58.4 3.3 28 55-83 7-34 (208)
432 PF05272 VirE: Virulence-assoc 96.5 0.0036 7.8E-08 57.1 5.1 22 55-76 54-75 (198)
433 cd01129 PulE-GspE PulE/GspE Th 96.5 0.0042 9E-08 58.7 5.6 69 55-128 82-160 (264)
434 PRK11160 cysteine/glutathione 96.5 0.003 6.5E-08 65.1 5.0 24 55-78 368-391 (574)
435 PRK07667 uridine kinase; Provi 96.5 0.0021 4.5E-08 57.4 3.4 36 55-90 19-57 (193)
436 PF13479 AAA_24: AAA domain 96.5 0.0045 9.7E-08 56.1 5.5 68 55-128 5-79 (213)
437 PF00493 MCM: MCM2/3/5 family 96.5 0.004 8.7E-08 60.5 5.5 130 55-215 59-220 (331)
438 TIGR01663 PNK-3'Pase polynucle 96.5 0.0047 1E-07 64.2 6.3 55 55-121 371-425 (526)
439 PF00437 T2SE: Type II/IV secr 96.5 0.0025 5.5E-08 58.9 3.8 69 55-128 129-208 (270)
440 PRK13951 bifunctional shikimat 96.5 0.0026 5.7E-08 65.2 4.3 40 56-97 3-42 (488)
441 PRK14737 gmk guanylate kinase; 96.5 0.0035 7.7E-08 56.2 4.6 23 55-77 6-28 (186)
442 PRK08972 fliI flagellum-specif 96.5 0.0042 9E-08 63.5 5.5 67 55-128 164-263 (444)
443 PRK04841 transcriptional regul 96.5 0.03 6.6E-07 59.4 12.2 30 55-85 34-63 (903)
444 TIGR03880 KaiC_arch_3 KaiC dom 96.5 0.011 2.3E-07 53.3 7.6 33 54-86 17-52 (224)
445 TIGR02322 phosphon_PhnN phosph 96.5 0.0016 3.4E-08 56.3 2.1 25 55-79 3-27 (179)
446 PRK00023 cmk cytidylate kinase 96.5 0.0016 3.4E-08 60.0 2.2 33 55-89 6-38 (225)
447 PF01583 APS_kinase: Adenylyls 96.4 0.0078 1.7E-07 53.5 6.4 70 56-131 5-84 (156)
448 PRK05541 adenylylsulfate kinas 96.4 0.0017 3.6E-08 56.3 2.2 24 55-78 9-32 (176)
449 TIGR02524 dot_icm_DotB Dot/Icm 96.4 0.0036 7.9E-08 61.9 4.8 32 46-77 120-158 (358)
450 TIGR02236 recomb_radA DNA repa 96.4 0.012 2.6E-07 55.9 8.0 23 55-77 97-119 (310)
451 PF09848 DUF2075: Uncharacteri 96.4 0.0023 5.1E-08 62.1 3.3 78 56-133 4-99 (352)
452 TIGR03375 type_I_sec_LssB type 96.4 0.0069 1.5E-07 63.6 6.9 24 55-78 493-516 (694)
453 PRK12338 hypothetical protein; 96.4 0.0019 4.1E-08 63.4 2.6 27 55-81 6-32 (319)
454 TIGR02857 CydD thiol reductant 96.4 0.0065 1.4E-07 61.5 6.4 24 55-78 350-373 (529)
455 KOG0990 Replication factor C, 96.4 0.014 3.1E-07 57.9 8.5 118 55-203 64-189 (360)
456 KOG3079 Uridylate kinase/adeny 96.4 0.0033 7.1E-08 57.9 3.6 55 55-111 10-83 (195)
457 cd01132 F1_ATPase_alpha F1 ATP 96.3 0.0091 2E-07 57.5 6.8 66 55-128 71-137 (274)
458 PF03796 DnaB_C: DnaB-like hel 96.3 0.012 2.6E-07 54.4 7.3 49 34-86 4-56 (259)
459 KOG1051 Chaperone HSP104 and r 96.3 0.014 2.9E-07 64.3 8.8 134 57-217 212-364 (898)
460 PRK13900 type IV secretion sys 96.3 0.006 1.3E-07 59.7 5.5 68 55-127 162-245 (332)
461 COG2401 ABC-type ATPase fused 96.3 0.0056 1.2E-07 63.0 5.4 108 55-188 411-573 (593)
462 KOG0057 Mitochondrial Fe/S clu 96.3 0.0053 1.1E-07 64.3 5.3 122 46-202 360-558 (591)
463 COG4618 ArpD ABC-type protease 96.3 0.0043 9.3E-08 64.6 4.5 131 55-218 364-565 (580)
464 PRK04301 radA DNA repair and r 96.3 0.019 4.1E-07 55.1 8.6 23 55-77 104-126 (317)
465 PTZ00035 Rad51 protein; Provis 96.3 0.016 3.5E-07 56.8 8.3 23 55-77 120-142 (337)
466 COG2274 SunT ABC-type bacterio 96.3 0.0048 1E-07 66.2 5.0 65 102-201 615-679 (709)
467 PRK13851 type IV secretion sys 96.3 0.0053 1.1E-07 60.6 4.9 68 55-127 164-246 (344)
468 TIGR00958 3a01208 Conjugate Tr 96.3 0.0097 2.1E-07 63.1 7.1 24 55-78 509-532 (711)
469 PRK11176 lipid transporter ATP 96.3 0.013 2.9E-07 59.9 7.8 24 55-78 371-394 (582)
470 PF08303 tRNA_lig_kinase: tRNA 96.3 0.0088 1.9E-07 54.1 5.8 46 59-108 5-50 (168)
471 PRK09435 membrane ATPase/prote 96.3 0.0065 1.4E-07 59.8 5.3 23 55-77 58-80 (332)
472 COG3854 SpoIIIAA ncharacterize 96.3 0.0053 1.2E-07 59.0 4.6 68 56-127 140-228 (308)
473 PRK13833 conjugal transfer pro 96.3 0.0063 1.4E-07 59.6 5.2 67 55-126 146-224 (323)
474 PF13481 AAA_25: AAA domain; P 96.2 0.0096 2.1E-07 51.6 5.8 23 55-77 34-56 (193)
475 PLN02165 adenylate isopentenyl 96.2 0.0025 5.4E-08 62.9 2.4 33 55-87 45-77 (334)
476 PF00005 ABC_tran: ABC transpo 96.2 0.0013 2.8E-08 54.0 0.3 25 55-79 13-37 (137)
477 PRK05917 DNA polymerase III su 96.2 0.026 5.6E-07 54.8 9.2 111 55-192 21-144 (290)
478 TIGR00955 3a01204 The Eye Pigm 96.2 0.013 2.7E-07 61.4 7.6 24 55-78 53-76 (617)
479 PRK10789 putative multidrug tr 96.2 0.0049 1.1E-07 63.4 4.5 23 55-77 343-365 (569)
480 COG1124 DppF ABC-type dipeptid 96.2 0.0023 5E-08 61.0 1.8 36 55-90 35-72 (252)
481 PRK14021 bifunctional shikimat 96.2 0.0052 1.1E-07 63.7 4.6 32 55-86 8-39 (542)
482 TIGR02688 conserved hypothetic 96.2 0.0038 8.2E-08 63.8 3.5 58 55-129 211-272 (449)
483 COG3265 GntK Gluconate kinase 96.2 0.0036 7.8E-08 56.1 2.8 29 60-90 2-30 (161)
484 TIGR02239 recomb_RAD51 DNA rep 96.1 0.015 3.3E-07 56.5 7.2 22 54-75 97-118 (316)
485 TIGR03499 FlhF flagellar biosy 96.1 0.011 2.4E-07 56.2 6.1 32 55-86 196-232 (282)
486 PRK14734 coaE dephospho-CoA ki 96.1 0.0042 9.2E-08 56.1 3.1 33 55-90 3-35 (200)
487 cd00561 CobA_CobO_BtuR ATP:cor 96.1 0.016 3.5E-07 51.6 6.7 75 56-131 5-109 (159)
488 TIGR03575 selen_PSTK_euk L-ser 96.1 0.0075 1.6E-07 59.6 5.0 53 56-108 2-63 (340)
489 COG4988 CydD ABC-type transpor 96.1 0.015 3.2E-07 61.0 7.3 24 55-78 349-372 (559)
490 TIGR02204 MsbA_rel ABC transpo 96.1 0.017 3.7E-07 58.9 7.6 24 55-78 368-391 (576)
491 PF12780 AAA_8: P-loop contain 96.1 0.013 2.7E-07 56.0 6.2 65 55-127 33-99 (268)
492 TIGR00962 atpA proton transloc 96.1 0.013 2.8E-07 60.8 6.7 68 55-128 163-264 (501)
493 PF00448 SRP54: SRP54-type pro 96.1 0.012 2.6E-07 53.4 5.7 22 55-76 3-24 (196)
494 PRK09518 bifunctional cytidyla 96.1 0.0036 7.7E-08 66.7 2.7 35 55-91 3-37 (712)
495 PTZ00265 multidrug resistance 96.1 0.014 2.9E-07 67.2 7.4 25 55-79 1196-1220(1466)
496 PTZ00301 uridine kinase; Provi 96.1 0.0045 9.7E-08 56.9 2.9 23 55-77 5-27 (210)
497 COG3842 PotA ABC-type spermidi 96.1 0.0016 3.5E-08 64.7 0.0 23 55-77 33-55 (352)
498 TIGR01846 type_I_sec_HlyB type 96.0 0.016 3.4E-07 61.1 7.3 24 55-78 485-508 (694)
499 COG0194 Gmk Guanylate kinase [ 96.0 0.015 3.2E-07 53.6 6.2 58 55-121 6-98 (191)
500 PF07931 CPT: Chloramphenicol 96.0 0.01 2.3E-07 53.3 5.2 37 55-91 3-39 (174)
No 1
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=100.00 E-value=4.2e-107 Score=793.93 Aligned_cols=312 Identities=61% Similarity=1.072 Sum_probs=301.5
Q ss_pred cccCccccccccCC-CCCcchhhhHHHH-HHhhhhhhccCccccchhhhh--------------------HhccccCCCC
Q 020787 7 ARAGVIDPLFAGNF-LGKDSDIVFDYRQ-KVTRSFEYLQGDYYIAPVFMA--------------------SLCIWGGKGQ 64 (321)
Q Consensus 7 ~~~~~~~~~f~~~~-~g~~~~i~~~~~~-~~~~~~~~~~~~~~~~p~f~~--------------------iLgL~GPPGc 64 (321)
..+||||+||||++ +|+|+||++.|++ +.+|+|+|++|||||||+||+ ||||||||||
T Consensus 80 ~g~g~vd~lf~~~~~~g~~~~i~~~~~~~~~~~~f~~~~g~~~~~p~f~dk~~~hi~kn~l~~~~ik~PlgllL~GPPGc 159 (413)
T PLN00020 80 RGKGMVDSLFQGPFGLGTDSDIASSYDYLQRTRSFDNLVGGYYIAPAFMDKVAVHIAKNFLALPNIKVPLILGIWGGKGQ 159 (413)
T ss_pred hcCCchhhhhcCCccCCcchhhhhhhHHHhhhcchhhhcCccccCHHHHHHHHHHHHhhhhhccCCCCCeEEEeeCCCCC
Confidence 45799999999999 8999999999888 899999999999999999998 8999999999
Q ss_pred cHHHHHHHHHHHcCCceEEeeccccccccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeecccccCCCCCCCccchhhHH
Q 020787 65 GKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQI 144 (321)
Q Consensus 65 GKTllaravA~e~g~~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~~r~~~t~~~v~~q~ 144 (321)
|||++|+|+|+++|++||.|+++||+|+|+|||||+||++|++|+++++++++|||||||||||++++++++++++++|+
T Consensus 160 GKTllAraiA~elg~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qi 239 (413)
T PLN00020 160 GKSFQCELVFKKMGIEPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGTTQYTVNNQM 239 (413)
T ss_pred CHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCCCCcchHHHH
Confidence 99999999999999999999999999999999999999999999999877899999999999999999998889999999
Q ss_pred HHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccccCCCCCCCcceecCCCHHHHHHHHHHHhhcCCCCHH
Q 020787 145 VVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITKD 224 (321)
Q Consensus 145 V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpALlRpGRfDr~i~~Pd~~~R~~Il~~~~~~~~l~~~ 224 (321)
|++|||++||||++||++|.|+..+..++||||+|||||++|||||+||||||++||+|++++|.+||+.|+++++++..
T Consensus 240 V~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~i~lPd~e~R~eIL~~~~r~~~l~~~ 319 (413)
T PLN00020 240 VNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVVHGIFRDDGVSRE 319 (413)
T ss_pred HHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCCCCceeCCCCHHHHHHHHHHHhccCCCCHH
Confidence 99999999999999999999955455789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhCCCCCcchhhHHHHHhHhHHHHHHHHHhccCcccccchhhcccCCCCCCcccCCcCCHHHHHHHHHHHHHHHH
Q 020787 225 EVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQ 304 (321)
Q Consensus 225 dl~~L~d~f~gq~idf~gAlra~~~d~~~~~~i~~~~g~~~~~~~lv~~~~~~~~~~~~~~~~s~~~l~~~g~~l~~eq~ 304 (321)
|+++|+++||||++|||||||+++||+++++||.++ |+|+++++|||++++ +|+|++|++|+++|++||++|++|||
T Consensus 320 dv~~Lv~~f~gq~~Df~GAlrar~yd~~v~~~i~~~-g~~~~~~~l~~~~~~--~p~f~~~~~t~~~l~~~g~~l~~eq~ 396 (413)
T PLN00020 320 DVVKLVDTFPGQPLDFFGALRARVYDDEVRKWIAEV-GVENLGKKLVNSKKG--PPTFEPPKMTLEKLLEYGNMLVREQE 396 (413)
T ss_pred HHHHHHHcCCCCCchhhhHHHHHHHHHHHHHHHHHh-hHHHHHHHHhcCCCC--CCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999 999999999999887 79999999999999999999999999
Q ss_pred HHHhhhhHHHHHhcCCC
Q 020787 305 LIMETKLSKEYMKNIDD 321 (321)
Q Consensus 305 ~v~~~~l~~~y~~~~~~ 321 (321)
+|++++||+|||+++++
T Consensus 397 ~v~~~~l~~~y~~~~~~ 413 (413)
T PLN00020 397 NVKRVQLSDEYLKNAAL 413 (413)
T ss_pred HHHHHHHHHHHHHhccC
Confidence 99999999999999875
No 2
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-71 Score=533.14 Aligned_cols=272 Identities=28% Similarity=0.391 Sum_probs=253.1
Q ss_pred ccccccccCc-cccccccCCCCCcchhhhHHHHHHhh--hhhhccCccccchhhhh---------------------Hhc
Q 020787 2 NIAVGARAGV-IDPLFAGNFLGKDSDIVFDYRQKVTR--SFEYLQGDYYIAPVFMA---------------------SLC 57 (321)
Q Consensus 2 ~~~~~~~~~~-~~~~f~~~~~g~~~~i~~~~~~~~~~--~~~~~~~~~~~~p~f~~---------------------iLg 57 (321)
|+++|.|.++ |+.||-|.+|++++|++++|++...| ||+|+.|+||+.|.|++ |||
T Consensus 91 ~i~~G~rv~ldittltIm~~lprevd~vy~m~~e~~~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~l 170 (388)
T KOG0651|consen 91 KIARGTRVVLDITTLTIMRGLPREVDLVYNMSHEDPRNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLL 170 (388)
T ss_pred hhccCceeeeeeeeeehhcccchHHHHHHHhhhcCccccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeE
Confidence 6789999999 99999999999999999999999999 99999999999999999 999
Q ss_pred cccCCCCcHHHHHHHHHHHcCCceEEeeccccccccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeecccccCCCCCCCc
Q 020787 58 IWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQ 137 (321)
Q Consensus 58 L~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~~r~~~t~ 137 (321)
||||||+||||||||||+.||++|+.|++++|+++|+|||+|+||++|++|+++ .|||||||||||+.+|| .++
T Consensus 171 l~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~kyiGEsaRlIRemf~yA~~~-----~pciifmdeiDAigGRr-~se 244 (388)
T KOG0651|consen 171 LYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKYIGESARLIRDMFRYAREV-----IPCIIFMDEIDAIGGRR-FSE 244 (388)
T ss_pred EeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhhcccHHHHHHHHHHHHhhh-----CceEEeehhhhhhccEE-ecc
Confidence 999999999999999999999999999999999999999999999999999988 79999999999999998 678
Q ss_pred cchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccccCCCCCCCcceecC--CCHHHHHHHHHHH
Q 020787 138 MTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQ--PNLEDILNIVHRM 215 (321)
Q Consensus 138 ~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpALlRpGRfDr~i~~--Pd~~~R~~Il~~~ 215 (321)
+|+++|+|++|||+|+| | |++.+...+||+|+||||||+|||||+|||||||+||+ |++..|.+
T Consensus 245 ~Ts~dreiqrTLMeLln-----q----mdgfd~l~rVk~ImatNrpdtLdpaLlRpGRldrk~~iPlpne~~r~~----- 310 (388)
T KOG0651|consen 245 GTSSDREIQRTLMELLN-----Q----MDGFDTLHRVKTIMATNRPDTLDPALLRPGRLDRKVEIPLPNEQARLG----- 310 (388)
T ss_pred ccchhHHHHHHHHHHHH-----h----hccchhcccccEEEecCCccccchhhcCCccccceeccCCcchhhcee-----
Confidence 89999999999999999 4 44566688999999999999999999999999999997 68887776
Q ss_pred hhcCCCCHHHHHHhhhCCCCCcchhhHHHHHhHhHHHHHHHHHhccCcccccchhhcccCCCCCCcccCCcCCHHHHHHH
Q 020787 216 YEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVFTPPEKTVEALLES 295 (321)
Q Consensus 216 ~~~~~l~~~dl~~L~d~f~gq~idf~gAlra~~~d~~~~~~i~~~~g~~~~~~~lv~~~~~~~~~~~~~~~~s~~~l~~~ 295 (321)
++.||+|+|||+||+| ++++.+|....||.+ +..+..+ .|.|.-|..+.+.|+++
T Consensus 311 --------------I~Kih~~~i~~~Geid----~eaivK~~d~f~gad----~rn~~tE---ag~Fa~~~~~~~vl~Ed 365 (388)
T KOG0651|consen 311 --------------ILKIHVQPIDFHGEID----DEAILKLVDGFNGAD----LRNVCTE---AGMFAIPEERDEVLHED 365 (388)
T ss_pred --------------eEeecccccccccccc----HHHHHHHHhccChHH----Hhhhccc---ccccccchhhHHHhHHH
Confidence 5578999999999999 889999999997776 3334433 58999999999999999
Q ss_pred HHHHHHHHHHHHhhhhHHHHHhc
Q 020787 296 GYSLLREQQLIMETKLSKEYMKN 318 (321)
Q Consensus 296 g~~l~~eq~~v~~~~l~~~y~~~ 318 (321)
+..+++||.++++++++.+|++.
T Consensus 366 ~~k~vrk~~~~kkle~~~~Y~~~ 388 (388)
T KOG0651|consen 366 FMKLVRKQADAKKLELSLDYKKA 388 (388)
T ss_pred HHHHHHHHHHHHHhhhhhhhccC
Confidence 99999999999999999999963
No 3
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-55 Score=426.45 Aligned_cols=203 Identities=19% Similarity=0.303 Sum_probs=179.5
Q ss_pred hccCccccchhhhh-------HhccccCCCCcHHHHHHHHHHHcCCceEEeeccccccccCCCcHHHHHHHHHHHHhhhh
Q 020787 41 YLQGDYYIAPVFMA-------SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQ 113 (321)
Q Consensus 41 ~~~~~~~~~p~f~~-------iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~ 113 (321)
-+.-+.-=|..|-. ..+||||||||||+||||||++.+|+||.|.||||++||+||++|++|++|+.|+++
T Consensus 166 ~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGEGaRlVRelF~lArek-- 243 (406)
T COG1222 166 VVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGEGARLVRELFELAREK-- 243 (406)
T ss_pred HhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhccchHHHHHHHHHHhhc--
Confidence 34445556777766 899999999999999999999999999999999999999999999999999999987
Q ss_pred hcCCceEEEeecccccCC-CCC-CCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccccCC
Q 020787 114 NQGKMSCLMINDIDAGLG-RFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLI 191 (321)
Q Consensus 114 ~~gaPcILFIDEIDAg~~-r~~-~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpALl 191 (321)
+|||||||||||+++ |++ +|++ ++.|+.|||+|+. |||| |+ ...+|+||+||||||+|||||+
T Consensus 244 ---aPsIIFiDEIDAIg~kR~d~~t~g---DrEVQRTmleLL~-----qlDG-FD---~~~nvKVI~ATNR~D~LDPALL 308 (406)
T COG1222 244 ---APSIIFIDEIDAIGAKRFDSGTSG---DREVQRTMLELLN-----QLDG-FD---PRGNVKVIMATNRPDILDPALL 308 (406)
T ss_pred ---CCeEEEEechhhhhcccccCCCCc---hHHHHHHHHHHHH-----hccC-CC---CCCCeEEEEecCCccccChhhc
Confidence 899999999999764 556 4444 5678888888877 7776 44 4679999999999999999999
Q ss_pred CCCCCcceecC--CCHHHHHHHHHHHhhcCC----CCHHHHHHhhhCCCCCcchh------hHHHHHhHhHHHHHHHHHh
Q 020787 192 RDGRMEKFYWQ--PNLEDILNIVHRMYEKDG----ITKDEVGSIVKTFPNQALDF------YGALRSRTYDRSISKWIDD 259 (321)
Q Consensus 192 RpGRfDr~i~~--Pd~~~R~~Il~~~~~~~~----l~~~dl~~L~d~f~gq~idf------~gAlra~~~d~~~~~~i~~ 259 (321)
|||||||+|.+ ||++.|.+||+.|++++. ++.+.++++.++|+||+|.. |.|+|.+.+.....||+++
T Consensus 309 RPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAdlkaictEAGm~AiR~~R~~Vt~~DF~~A 388 (406)
T COG1222 309 RPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLKAICTEAGMFAIRERRDEVTMEDFLKA 388 (406)
T ss_pred CCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHHhcCCCchHHHHHHHHHHhHHHHHhccCeecHHHHHHH
Confidence 99999999975 899999999999999885 56789999999999999854 6699999999999999999
Q ss_pred c
Q 020787 260 I 260 (321)
Q Consensus 260 ~ 260 (321)
+
T Consensus 389 v 389 (406)
T COG1222 389 V 389 (406)
T ss_pred H
Confidence 8
No 4
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-50 Score=414.46 Aligned_cols=231 Identities=20% Similarity=0.267 Sum_probs=201.0
Q ss_pred ccCccccchhhhh-------HhccccCCCCcHHHHHHHHHHHcCCceEEeeccccccccCCCcHHHHHHHHHHHHhhhhh
Q 020787 42 LQGDYYIAPVFMA-------SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQN 114 (321)
Q Consensus 42 ~~~~~~~~p~f~~-------iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~ 114 (321)
++-+...|..|.. ..+||||||||||++|||+|++++++|+.|+++||+|||+||||+.||++|++|++.
T Consensus 450 V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~vGeSEr~ir~iF~kAR~~--- 526 (693)
T KOG0730|consen 450 VEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYVGESERAIREVFRKARQV--- 526 (693)
T ss_pred HhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhcCchHHHHHHHHHHHhhc---
Confidence 3445667777776 789999999999999999999999999999999999999999999999999999977
Q ss_pred cCCceEEEeecccccCCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccccCCCCC
Q 020787 115 QGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDG 194 (321)
Q Consensus 115 ~gaPcILFIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpALlRpG 194 (321)
+|||||||||||+++.|++.+.++ ..+|.++||++|||.. ..++|.||+|||||+.|||||+|||
T Consensus 527 --aP~IiFfDEiDsi~~~R~g~~~~v-~~RVlsqLLtEmDG~e------------~~k~V~ViAATNRpd~ID~ALlRPG 591 (693)
T KOG0730|consen 527 --APCIIFFDEIDALAGSRGGSSSGV-TDRVLSQLLTEMDGLE------------ALKNVLVIAATNRPDMIDPALLRPG 591 (693)
T ss_pred --CCeEEehhhHHhHhhccCCCccch-HHHHHHHHHHHccccc------------ccCcEEEEeccCChhhcCHHHcCCc
Confidence 899999999999998887444455 4567789999999631 1468999999999999999999999
Q ss_pred CCcceecC--CCHHHHHHHHHHHhhcCCCCH-HHHHHhhhCCCCCcchhhHHHHHhHhHHHHHHHHHhccCcccccchhh
Q 020787 195 RMEKFYWQ--PNLEDILNIVHRMYEKDGITK-DEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLL 271 (321)
Q Consensus 195 RfDr~i~~--Pd~~~R~~Il~~~~~~~~l~~-~dl~~L~d~f~gq~idf~gAlra~~~d~~~~~~i~~~~g~~~~~~~lv 271 (321)
|||+.||+ ||.+.|++||+.++++++++. .|+.+|+.. +-.|+||....+|.++..-|+++. +....+
T Consensus 592 RlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~~----T~g~SGAel~~lCq~A~~~a~~e~-----i~a~~i 662 (693)
T KOG0730|consen 592 RLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQA----TEGYSGAEIVAVCQEAALLALRES-----IEATEI 662 (693)
T ss_pred ccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHHH----hccCChHHHHHHHHHHHHHHHHHh-----cccccc
Confidence 99999986 899999999999999998865 477777753 334777888999999999999987 347788
Q ss_pred cccCCCCCCcccCCcCCHHHHHHHHHHH
Q 020787 272 KRRKDKELPVFTPPEKTVEALLESGYSL 299 (321)
Q Consensus 272 ~~~~~~~~~~~~~~~~s~~~l~~~g~~l 299 (321)
...+++++..+.+|++|-+.|-.|...-
T Consensus 663 ~~~hf~~al~~~r~s~~~~~~~~Ye~fa 690 (693)
T KOG0730|consen 663 TWQHFEEALKAVRPSLTSELLEKYEDFA 690 (693)
T ss_pred cHHHHHHHHHhhcccCCHHHHHHHHHHh
Confidence 8888888999999999999998887654
No 5
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.6e-50 Score=408.24 Aligned_cols=221 Identities=17% Similarity=0.251 Sum_probs=171.5
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeeccccccccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeecccccCCCCC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG 134 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~~r~~ 134 (321)
..+||||||||||+||+|||+|.|+|||+|.|+||++||+|||||.||++|.+|+.. +|||||||||||+++||+
T Consensus 547 GvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNkYVGESErAVR~vFqRAR~s-----aPCVIFFDEiDaL~p~R~ 621 (802)
T KOG0733|consen 547 GVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNKYVGESERAVRQVFQRARAS-----APCVIFFDEIDALVPRRS 621 (802)
T ss_pred ceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHHHhhhHHHHHHHHHHHhhcC-----CCeEEEecchhhcCcccC
Confidence 789999999999999999999999999999999999999999999999999999955 899999999999999998
Q ss_pred CCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccccCCCCCCCcceecC--CCHHHHHHHH
Q 020787 135 NTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQ--PNLEDILNIV 212 (321)
Q Consensus 135 ~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpALlRpGRfDr~i~~--Pd~~~R~~Il 212 (321)
.....+ ..+|+.|||+.|||. ++ ..+|+||+||||||.||||++||||||+.+|+ |+.++|.+||
T Consensus 622 ~~~s~~-s~RvvNqLLtElDGl-----------~~-R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~IL 688 (802)
T KOG0733|consen 622 DEGSSV-SSRVVNQLLTELDGL-----------EE-RRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAIL 688 (802)
T ss_pred CCCchh-HHHHHHHHHHHhccc-----------cc-ccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHH
Confidence 544444 345777999999963 12 57899999999999999999999999998875 9999999999
Q ss_pred HHHhh--cCCCC-HHHHHHhhhCCCCCcc--hhhHHHHHhHhHHHHHHHHHhcc-----Cccccc----chhhcccCCCC
Q 020787 213 HRMYE--KDGIT-KDEVGSIVKTFPNQAL--DFYGALRSRTYDRSISKWIDDIG-----GVENLG----NKLLKRRKDKE 278 (321)
Q Consensus 213 ~~~~~--~~~l~-~~dl~~L~d~f~gq~i--df~gAlra~~~d~~~~~~i~~~~-----g~~~~~----~~lv~~~~~~~ 278 (321)
+.+++ +.+++ +.|+..|+. .+- .|.||..|.++.++.-.++++.- +.+.+. ...+..+++++
T Consensus 689 K~~tkn~k~pl~~dVdl~eia~----~~~c~gftGADLaaLvreAsi~AL~~~~~~~~~~~~~~~~~~~~~~~t~~hF~e 764 (802)
T KOG0733|consen 689 KTITKNTKPPLSSDVDLDEIAR----NTKCEGFTGADLAALVREASILALRESLFEIDSSEDDVTVRSSTIIVTYKHFEE 764 (802)
T ss_pred HHHhccCCCCCCcccCHHHHhh----cccccCCchhhHHHHHHHHHHHHHHHHHhhccccCcccceeeeeeeecHHHHHH
Confidence 99999 44443 345555542 222 56777778888777666665420 112111 12234445555
Q ss_pred CCcccCCcCCHHHHHHHHH
Q 020787 279 LPVFTPPEKTVEALLESGY 297 (321)
Q Consensus 279 ~~~~~~~~~s~~~l~~~g~ 297 (321)
+.+-.+|++|-.+-..|.+
T Consensus 765 A~~~i~pSv~~~dr~~Yd~ 783 (802)
T KOG0733|consen 765 AFQRIRPSVSERDRKKYDR 783 (802)
T ss_pred HHHhcCCCccHHHHHHHHH
Confidence 5555667776655555543
No 6
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-47 Score=388.31 Aligned_cols=184 Identities=20% Similarity=0.212 Sum_probs=154.9
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeeccccccccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeecccccCCCCC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG 134 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~~r~~ 134 (321)
.++||||||||||+||+|+|+++|++|+.|+++||+|++.||||+.||++|++|... +|||+|||||||++|+|.
T Consensus 225 GvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGvSGESEkkiRelF~~A~~~-----aPcivFiDeIDAI~pkRe 299 (802)
T KOG0733|consen 225 GVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVSGESEKKIRELFDQAKSN-----APCIVFIDEIDAITPKRE 299 (802)
T ss_pred ceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcccCcccHHHHHHHHHHHhcc-----CCeEEEeecccccccchh
Confidence 889999999999999999999999999999999999999999999999999999865 899999999999999999
Q ss_pred CCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccccCCCCCCCcceec--CCCHHHHHHHH
Q 020787 135 NTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYW--QPNLEDILNIV 212 (321)
Q Consensus 135 ~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpALlRpGRfDr~i~--~Pd~~~R~~Il 212 (321)
+.|.++ .|++++||+++||++++..-. ...|.||+||||||.|||||+|+||||++|. +|++.+|.+||
T Consensus 300 ~aqreM-ErRiVaQLlt~mD~l~~~~~~--------g~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL 370 (802)
T KOG0733|consen 300 EAQREM-ERRIVAQLLTSMDELSNEKTK--------GDPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEIL 370 (802)
T ss_pred hHHHHH-HHHHHHHHHHhhhcccccccC--------CCCeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHH
Confidence 877766 466788999999987543221 3579999999999999999999999999986 69999999999
Q ss_pred HHHhhcCCCC----HHHHHHhhhCCCCCcchhhHHHHHhHhHHHHHHHHHh
Q 020787 213 HRMYEKDGIT----KDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDD 259 (321)
Q Consensus 213 ~~~~~~~~l~----~~dl~~L~d~f~gq~idf~gAlra~~~d~~~~~~i~~ 259 (321)
+.++++..++ ...+++|+.+|-| |....++-++..-+|+.
T Consensus 371 ~~~~~~lrl~g~~d~~qlA~lTPGfVG-------ADL~AL~~~Aa~vAikR 414 (802)
T KOG0733|consen 371 RIICRGLRLSGDFDFKQLAKLTPGFVG-------ADLMALCREAAFVAIKR 414 (802)
T ss_pred HHHHhhCCCCCCcCHHHHHhcCCCccc-------hhHHHHHHHHHHHHHHH
Confidence 9999987654 4555555555555 44444454444444433
No 7
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3e-46 Score=387.01 Aligned_cols=187 Identities=18% Similarity=0.272 Sum_probs=160.0
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeeccccccccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeecccccCCCCC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG 134 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~~r~~ 134 (321)
.++||||||||||++|||||+|+..+|++|+|+||+++|+||||+++|++|++||+. +||||||||||+++|.||
T Consensus 707 GILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLNMYVGqSE~NVR~VFerAR~A-----~PCVIFFDELDSlAP~RG 781 (953)
T KOG0736|consen 707 GILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLNMYVGQSEENVREVFERARSA-----APCVIFFDELDSLAPNRG 781 (953)
T ss_pred eeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHHHHhcchHHHHHHHHHHhhcc-----CCeEEEeccccccCccCC
Confidence 789999999999999999999999999999999999999999999999999999966 899999999999999888
Q ss_pred --CCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccccCCCCCCCcceecC-C--CHHHHH
Q 020787 135 --NTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQ-P--NLEDIL 209 (321)
Q Consensus 135 --~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpALlRpGRfDr~i~~-P--d~~~R~ 209 (321)
+.+++|-+ +|+.|||.+||+.. .+....|+||+||||||.|||||+|||||||.+|+ | |.+.+.
T Consensus 782 ~sGDSGGVMD-RVVSQLLAELDgls----------~~~s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~ 850 (953)
T KOG0736|consen 782 RSGDSGGVMD-RVVSQLLAELDGLS----------DSSSQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKL 850 (953)
T ss_pred CCCCccccHH-HHHHHHHHHhhccc----------CCCCCceEEEecCCCccccChhhcCCCccceeEEecCCccHHHHH
Confidence 55566654 57789999999642 11367899999999999999999999999999886 4 778899
Q ss_pred HHHHHHhhcCCCCH-HHHHHhhhCCCCCcchhhHHHHHhHhHHHHHHHHHhc
Q 020787 210 NIVHRMYEKDGITK-DEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDI 260 (321)
Q Consensus 210 ~Il~~~~~~~~l~~-~dl~~L~d~f~gq~idf~gAlra~~~d~~~~~~i~~~ 260 (321)
.||++++++-.++. .|+..+++.+|- .|.||.-=.+|-++...++++.
T Consensus 851 ~vL~AlTrkFkLdedVdL~eiAk~cp~---~~TGADlYsLCSdA~l~AikR~ 899 (953)
T KOG0736|consen 851 RVLEALTRKFKLDEDVDLVEIAKKCPP---NMTGADLYSLCSDAMLAAIKRT 899 (953)
T ss_pred HHHHHHHHHccCCCCcCHHHHHhhCCc---CCchhHHHHHHHHHHHHHHHHH
Confidence 99999999887763 677777776665 5666666667777766666553
No 8
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-44 Score=341.25 Aligned_cols=189 Identities=18% Similarity=0.277 Sum_probs=163.2
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeeccccccccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeecccccC-CCC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGL-GRF 133 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~-~r~ 133 (321)
..+||||||||||+||+|||+...++||.|.|+|++.||.||+.|++|++||.|++. +|+|||||||||++ +||
T Consensus 191 gvllygppg~gktml~kava~~t~a~firvvgsefvqkylgegprmvrdvfrlaken-----apsiifideidaiatkrf 265 (408)
T KOG0727|consen 191 GVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKEN-----APSIIFIDEIDAIATKRF 265 (408)
T ss_pred ceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhccCcHHHHHHHHHHhcc-----CCcEEEeehhhhHhhhhc
Confidence 689999999999999999999999999999999999999999999999999999977 89999999999987 688
Q ss_pred C-CCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccccCCCCCCCcceecC--CCHHHHHH
Q 020787 134 G-NTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQ--PNLEDILN 210 (321)
Q Consensus 134 ~-~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpALlRpGRfDr~i~~--Pd~~~R~~ 210 (321)
+ .|+.+. .|+..|+++++ ||+| |+ ...+|+||+||||.++|||||+||||+||+|.. ||+.+++-
T Consensus 266 daqtgadr---evqril~elln-----qmdg-fd---q~~nvkvimatnradtldpallrpgrldrkiefplpdrrqkrl 333 (408)
T KOG0727|consen 266 DAQTGADR---EVQRILIELLN-----QMDG-FD---QTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRL 333 (408)
T ss_pred cccccccH---HHHHHHHHHHH-----hccC-cC---cccceEEEEecCcccccCHhhcCCccccccccCCCCchhhhhh
Confidence 8 666654 44444555554 4444 33 367999999999999999999999999999874 89999999
Q ss_pred HHHHHhhcCCCC----HHHHHHhhhCCCCCcchh------hHHHHHhHhHHHHHHHHHhc
Q 020787 211 IVHRMYEKDGIT----KDEVGSIVKTFPNQALDF------YGALRSRTYDRSISKWIDDI 260 (321)
Q Consensus 211 Il~~~~~~~~l~----~~dl~~L~d~f~gq~idf------~gAlra~~~d~~~~~~i~~~ 260 (321)
+++.++.+++++ .+++..-.|..+|++|.- +-|.|+..|-...++|.+..
T Consensus 334 vf~titskm~ls~~vdle~~v~rpdkis~adi~aicqeagm~avr~nryvvl~kd~e~ay 393 (408)
T KOG0727|consen 334 VFSTITSKMNLSDEVDLEDLVARPDKISGADINAICQEAGMLAVRENRYVVLQKDFEKAY 393 (408)
T ss_pred hHHhhhhcccCCcccCHHHHhcCccccchhhHHHHHHHHhHHHHHhcceeeeHHHHHHHH
Confidence 999998888654 566777778899998865 55899999999999998877
No 9
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.3e-43 Score=332.08 Aligned_cols=202 Identities=18% Similarity=0.282 Sum_probs=172.7
Q ss_pred ccCccccchhhhh-------HhccccCCCCcHHHHHHHHHHHcCCceEEeeccccccccCCCcHHHHHHHHHHHHhhhhh
Q 020787 42 LQGDYYIAPVFMA-------SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQN 114 (321)
Q Consensus 42 ~~~~~~~~p~f~~-------iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~ 114 (321)
+.-+..-|++|+. .++||||||+|||+.|||||+..++.||.|-+|||++||+||++|++|++|+.|+.
T Consensus 193 ve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigselvqkyvgegarmvrelf~mart---- 268 (435)
T KOG0729|consen 193 VELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMART---- 268 (435)
T ss_pred HhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHHHHHhhhhHHHHHHHHHHhcc----
Confidence 3456778899987 89999999999999999999999999999999999999999999999999999984
Q ss_pred cCCceEEEeecccccC-CCCC-CCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccccCCC
Q 020787 115 QGKMSCLMINDIDAGL-GRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIR 192 (321)
Q Consensus 115 ~gaPcILFIDEIDAg~-~r~~-~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpALlR 192 (321)
.+-||||||||||+. .||+ +.+.+ ..|+.|+|+++. ||+| | +...+++|++|||||++|||||+|
T Consensus 269 -kkaciiffdeidaiggarfddg~ggd---nevqrtmleli~-----qldg-f---dprgnikvlmatnrpdtldpallr 335 (435)
T KOG0729|consen 269 -KKACIIFFDEIDAIGGARFDDGAGGD---NEVQRTMLELIN-----QLDG-F---DPRGNIKVLMATNRPDTLDPALLR 335 (435)
T ss_pred -cceEEEEeeccccccCccccCCCCCc---HHHHHHHHHHHH-----hccC-C---CCCCCeEEEeecCCCCCcCHhhcC
Confidence 489999999999955 5887 44433 356677777766 6666 4 446799999999999999999999
Q ss_pred CCCCcceec--CCCHHHHHHHHHHHhhcCCCC----HHHHHHhhhCCCCCcchh------hHHHHHhHhHHHHHHHHHhc
Q 020787 193 DGRMEKFYW--QPNLEDILNIVHRMYEKDGIT----KDEVGSIVKTFPNQALDF------YGALRSRTYDRSISKWIDDI 260 (321)
Q Consensus 193 pGRfDr~i~--~Pd~~~R~~Il~~~~~~~~l~----~~dl~~L~d~f~gq~idf------~gAlra~~~d~~~~~~i~~~ 260 (321)
|||+||++. +||.+.|..||+.|.+.+++. .+-+.+|...-.|+.|.. +.|+|+|.--..-++|++++
T Consensus 336 pgrldrkvef~lpdlegrt~i~kihaksmsverdir~ellarlcpnstgaeirsvcteagmfairarrk~atekdfl~av 415 (435)
T KOG0729|consen 336 PGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKVATEKDFLDAV 415 (435)
T ss_pred CcccccceeccCCcccccceeEEEeccccccccchhHHHHHhhCCCCcchHHHHHHHHhhHHHHHHHhhhhhHHHHHHHH
Confidence 999999775 699999999999999888765 456667766666777744 66999999999999999988
No 10
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3e-42 Score=325.28 Aligned_cols=189 Identities=21% Similarity=0.312 Sum_probs=160.4
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeeccccccccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeecccccCC-CC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLG-RF 133 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~~-r~ 133 (321)
.++||||||+|||++|+|||....+.||.|||+||++||+||+.|++|++|-.|+++ +|+|||+||||++.. |.
T Consensus 183 GvlLygppgtGktLlaraVahht~c~firvsgselvqk~igegsrmvrelfvmareh-----apsiifmdeidsigs~r~ 257 (404)
T KOG0728|consen 183 GVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREH-----APSIIFMDEIDSIGSSRV 257 (404)
T ss_pred ceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHHHHhhhhHHHHHHHHHHHHhc-----CCceEeeecccccccccc
Confidence 778999999999999999999999999999999999999999999999999999998 899999999999765 44
Q ss_pred C-CCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccccCCCCCCCcceecC--CCHHHHHH
Q 020787 134 G-NTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQ--PNLEDILN 210 (321)
Q Consensus 134 ~-~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpALlRpGRfDr~i~~--Pd~~~R~~ 210 (321)
+ ++++ +..|+.|++++++ |++| .+.++++.||+||||.|.|||||+||||+||.|.. |++++|.+
T Consensus 258 e~~~gg---dsevqrtmlelln-----qldg----featknikvimatnridild~allrpgridrkiefp~p~e~ar~~ 325 (404)
T KOG0728|consen 258 ESGSGG---DSEVQRTMLELLN-----QLDG----FEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLD 325 (404)
T ss_pred cCCCCc---cHHHHHHHHHHHH-----hccc----cccccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHH
Confidence 4 3333 3466677777776 6666 33367999999999999999999999999999864 89999999
Q ss_pred HHHHHhhcCCCCH-HHHHHhhhCCC---CCcch------hhHHHHHhHhHHHHHHHHHhc
Q 020787 211 IVHRMYEKDGITK-DEVGSIVKTFP---NQALD------FYGALRSRTYDRSISKWIDDI 260 (321)
Q Consensus 211 Il~~~~~~~~l~~-~dl~~L~d~f~---gq~id------f~gAlra~~~d~~~~~~i~~~ 260 (321)
||+.+.+++++.. -++.+++...| |+.+. -+.|||+|......+||..++
T Consensus 326 ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~vcteagm~alrerrvhvtqedfemav 385 (404)
T KOG0728|consen 326 ILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAV 385 (404)
T ss_pred HHHHhhhhhchhcccCHHHHHHhCCCCccchhhhhhhhhhHHHHHHhhccccHHHHHHHH
Confidence 9999999987653 45555555555 44442 256999999999999999998
No 11
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.5e-42 Score=352.88 Aligned_cols=191 Identities=18% Similarity=0.272 Sum_probs=160.7
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeeccccccccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeecccccCCCCC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG 134 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~~r~~ 134 (321)
..+||||||||||+||-|+|..++.+||+|+|+||++||+|.||.++|++|.+|+.. +||||||||+|+++||||
T Consensus 703 giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyIGaSEq~vR~lF~rA~~a-----~PCiLFFDEfdSiAPkRG 777 (952)
T KOG0735|consen 703 GILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYIGASEQNVRDLFERAQSA-----KPCILFFDEFDSIAPKRG 777 (952)
T ss_pred ceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHhcccHHHHHHHHHHhhcc-----CCeEEEeccccccCcccC
Confidence 889999999999999999999999999999999999999999999999999999855 899999999999999999
Q ss_pred CCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccccCCCCCCCcceec--CCCHHHHHHHH
Q 020787 135 NTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYW--QPNLEDILNIV 212 (321)
Q Consensus 135 ~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpALlRpGRfDr~i~--~Pd~~~R~~Il 212 (321)
+.+.+|.+| |+.+||+.|||.. ...+|.|++||.|||.|||||+|||||||.++ .|++.+|++||
T Consensus 778 hDsTGVTDR-VVNQlLTelDG~E------------gl~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il 844 (952)
T KOG0735|consen 778 HDSTGVTDR-VVNQLLTELDGAE------------GLDGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEIL 844 (952)
T ss_pred CCCCCchHH-HHHHHHHhhcccc------------ccceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHH
Confidence 776667555 6668999999632 25689999999999999999999999999887 59999999999
Q ss_pred HHHhhcC----CCCHHHHHHhhhCCCCCcchhhHHHHHhHhHHHHHHHHHhccCccccc
Q 020787 213 HRMYEKD----GITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLG 267 (321)
Q Consensus 213 ~~~~~~~----~l~~~dl~~L~d~f~gq~idf~gAlra~~~d~~~~~~i~~~~g~~~~~ 267 (321)
+.+..+- .++.+-+...+|+|+|+++- +|.-..+-.++.+|+++. |.+++.
T Consensus 845 ~~ls~s~~~~~~vdl~~~a~~T~g~tgADlq---~ll~~A~l~avh~~l~~~-~~~~~~ 899 (952)
T KOG0735|consen 845 QVLSNSLLKDTDVDLECLAQKTDGFTGADLQ---SLLYNAQLAAVHEILKRE-DEEGVV 899 (952)
T ss_pred HHHhhccCCccccchHHHhhhcCCCchhhHH---HHHHHHHHHHHHHHHHhc-CccccC
Confidence 9876643 45666677777777777553 233334445688899988 554443
No 12
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-42 Score=331.34 Aligned_cols=190 Identities=19% Similarity=0.297 Sum_probs=169.0
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeeccccccccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeecccccC-CCC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGL-GRF 133 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~-~r~ 133 (321)
.+.|||+||||||+||+|||++..+.|+++.++||+++|.|+++|++|++|+.|.++ +|+|+|||||||+. +|+
T Consensus 221 GVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQkylGdGpklvRqlF~vA~e~-----apSIvFiDEIdAiGtKRy 295 (440)
T KOG0726|consen 221 GVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEH-----APSIVFIDEIDAIGTKRY 295 (440)
T ss_pred eeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHHHHhccchHHHHHHHHHHHhc-----CCceEEeehhhhhccccc
Confidence 678999999999999999999999999999999999999999999999999999988 89999999999954 677
Q ss_pred CCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccccCCCCCCCcceec--CCCHHHHHHH
Q 020787 134 GNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYW--QPNLEDILNI 211 (321)
Q Consensus 134 ~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpALlRpGRfDr~i~--~Pd~~~R~~I 211 (321)
++.+.+ .|.++.|+|++++ |++| |++ ...|.||+||||+++|||||+||||+||+|. .||+..|..|
T Consensus 296 ds~Sgg--erEiQrtmLELLN-----QldG-Fds---rgDvKvimATnrie~LDPaLiRPGrIDrKIef~~pDe~TkkkI 364 (440)
T KOG0726|consen 296 DSNSGG--EREIQRTMLELLN-----QLDG-FDS---RGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKKI 364 (440)
T ss_pred cCCCcc--HHHHHHHHHHHHH-----hccC-ccc---cCCeEEEEecccccccCHhhcCCCccccccccCCCchhhhcee
Confidence 743332 4788889988888 7777 443 6789999999999999999999999999886 4999999999
Q ss_pred HHHHhhcC----CCCHHHHHHhhhCCCCCcchh------hHHHHHhHhHHHHHHHHHhc
Q 020787 212 VHRMYEKD----GITKDEVGSIVKTFPNQALDF------YGALRSRTYDRSISKWIDDI 260 (321)
Q Consensus 212 l~~~~~~~----~l~~~dl~~L~d~f~gq~idf------~gAlra~~~d~~~~~~i~~~ 260 (321)
|+.|+.++ +|+.+++..--|.|+|++|.- .-|||++......+||.++.
T Consensus 365 f~IHTs~Mtl~~dVnle~li~~kddlSGAdIkAictEaGllAlRerRm~vt~~DF~ka~ 423 (440)
T KOG0726|consen 365 FQIHTSRMTLAEDVNLEELIMTKDDLSGADIKAICTEAGLLALRERRMKVTMEDFKKAK 423 (440)
T ss_pred EEEeecccchhccccHHHHhhcccccccccHHHHHHHHhHHHHHHHHhhccHHHHHHHH
Confidence 98777766 467889999999999999865 44999999999999999987
No 13
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4e-41 Score=319.05 Aligned_cols=190 Identities=19% Similarity=0.315 Sum_probs=168.2
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeeccccccccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeeccccc-CCCC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAG-LGRF 133 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg-~~r~ 133 (321)
..++|||||||||++|||+|.+..+.|+.+.++.|+++|+|+++|++|+.|..|.+. +|||||||||||+ .+||
T Consensus 207 GvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQMfIGdGAkLVRDAFaLAKEk-----aP~IIFIDElDAIGtKRf 281 (424)
T KOG0652|consen 207 GVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK-----APTIIFIDELDAIGTKRF 281 (424)
T ss_pred ceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHHhhhhcchHHHHHHHHHHhhcc-----CCeEEEEechhhhccccc
Confidence 789999999999999999999999999999999999999999999999999999876 8999999999995 5788
Q ss_pred CCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccccCCCCCCCcceecC--CCHHHHHHH
Q 020787 134 GNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQ--PNLEDILNI 211 (321)
Q Consensus 134 ~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpALlRpGRfDr~i~~--Pd~~~R~~I 211 (321)
++... .++.|+.|+|++++ |++| |.+ ..+|+||+||||.+.|||||+|.||+||+|.. |++++|..|
T Consensus 282 DSek~--GDREVQRTMLELLN-----QLDG-Fss---~~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarI 350 (424)
T KOG0652|consen 282 DSEKA--GDREVQRTMLELLN-----QLDG-FSS---DDRVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARI 350 (424)
T ss_pred ccccc--ccHHHHHHHHHHHH-----hhcC-CCC---ccceEEEeecccccccCHHHhhcccccccccCCCCChHHHHHH
Confidence 74432 25778888888877 7776 333 56899999999999999999999999999874 899999999
Q ss_pred HHHHhhcCC----CCHHHHHHhhhCCCCCcchh------hHHHHHhHhHHHHHHHHHhc
Q 020787 212 VHRMYEKDG----ITKDEVGSIVKTFPNQALDF------YGALRSRTYDRSISKWIDDI 260 (321)
Q Consensus 212 l~~~~~~~~----l~~~dl~~L~d~f~gq~idf------~gAlra~~~d~~~~~~i~~~ 260 (321)
++.|.++++ ++.+++.+-+|.|+|+.+.- +-|||...-....++|+..+
T Consensus 351 lQIHsRKMnv~~DvNfeELaRsTddFNGAQcKAVcVEAGMiALRr~atev~heDfmegI 409 (424)
T KOG0652|consen 351 LQIHSRKMNVSDDVNFEELARSTDDFNGAQCKAVCVEAGMIALRRGATEVTHEDFMEGI 409 (424)
T ss_pred HHHhhhhcCCCCCCCHHHHhhcccccCchhheeeehhhhHHHHhcccccccHHHHHHHH
Confidence 999988875 56799999999999998743 66999998888999999876
No 14
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.6e-41 Score=328.68 Aligned_cols=224 Identities=17% Similarity=0.174 Sum_probs=177.0
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeeccccccccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeecccccCCCCC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG 134 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~~r~~ 134 (321)
.++++||||||||+||+|||.|||..|+.||++.|.|||-|||||+||-+|+.|+-. +|++|||||||++|.+||
T Consensus 247 gvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstltSKwRGeSEKlvRlLFemARfy-----APStIFiDEIDslcs~RG 321 (491)
T KOG0738|consen 247 GVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLTSKWRGESEKLVRLLFEMARFY-----APSTIFIDEIDSLCSQRG 321 (491)
T ss_pred eeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhhhhhccchHHHHHHHHHHHHHh-----CCceeehhhHHHHHhcCC
Confidence 889999999999999999999999999999999999999999999999999999966 899999999999999999
Q ss_pred CCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccccCCCCCCCcceecC--CCHHHHHHHH
Q 020787 135 NTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQ--PNLEDILNIV 212 (321)
Q Consensus 135 ~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpALlRpGRfDr~i~~--Pd~~~R~~Il 212 (321)
+.+....+++|.+.||-+|||.. + ..+..+.|.|++|||-||.||.||+| ||+|.|++ ||.++|..++
T Consensus 322 ~s~EHEaSRRvKsELLvQmDG~~-----~---t~e~~k~VmVLAATN~PWdiDEAlrR--RlEKRIyIPLP~~~~R~~Li 391 (491)
T KOG0738|consen 322 GSSEHEASRRVKSELLVQMDGVQ-----G---TLENSKVVMVLAATNFPWDIDEALRR--RLEKRIYIPLPDAEARSALI 391 (491)
T ss_pred CccchhHHHHHHHHHHHHhhccc-----c---ccccceeEEEEeccCCCcchHHHHHH--HHhhheeeeCCCHHHHHHHH
Confidence 76666667999999998888642 2 22213469999999999999999999 99998885 8999999999
Q ss_pred HHHhhcCC----CCHHHHHHhhhCCCCCcchhhHHHHHhHhHHHHHHHHHh-cc-----Ccccccchhhc----ccCCCC
Q 020787 213 HRMYEKDG----ITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDD-IG-----GVENLGNKLLK----RRKDKE 278 (321)
Q Consensus 213 ~~~~~~~~----l~~~dl~~L~d~f~gq~idf~gAlra~~~d~~~~~~i~~-~~-----g~~~~~~~lv~----~~~~~~ 278 (321)
+..++... +..++|....++|+| |....+|.++.-..+.. +. ++.++++..+. ...+++
T Consensus 392 ~~~l~~~~~~~~~~~~~lae~~eGySG-------aDI~nvCreAsm~~mRR~i~g~~~~ei~~lakE~~~~pv~~~Dfe~ 464 (491)
T KOG0738|consen 392 KILLRSVELDDPVNLEDLAERSEGYSG-------ADITNVCREASMMAMRRKIAGLTPREIRQLAKEEPKMPVTNEDFEE 464 (491)
T ss_pred HHhhccccCCCCccHHHHHHHhcCCCh-------HHHHHHHHHHHHHHHHHHHhcCCcHHhhhhhhhccccccchhhHHH
Confidence 98887654 557788877777766 55566677665555542 11 22333333222 222223
Q ss_pred CCcccCCcCCHHHHHHHHHHHH
Q 020787 279 LPVFTPPEKTVEALLESGYSLL 300 (321)
Q Consensus 279 ~~~~~~~~~s~~~l~~~g~~l~ 300 (321)
+..-+.|+.+-.+|..|.+.+.
T Consensus 465 Al~~v~pSvs~~d~~k~ekW~~ 486 (491)
T KOG0738|consen 465 ALRKVRPSVSAADLEKYEKWMD 486 (491)
T ss_pred HHHHcCcCCCHHHHHHHHHHHH
Confidence 3444678888888888877654
No 15
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-40 Score=334.75 Aligned_cols=180 Identities=19% Similarity=0.252 Sum_probs=153.2
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeeccccccccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeecccccCCCCC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG 134 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~~r~~ 134 (321)
..+|.||||||||+||||||.|.|++|+.++|+|+...|+|-++|+||++|+.|+.. +|||||||||||+.++|.
T Consensus 339 GVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~VGvGArRVRdLF~aAk~~-----APcIIFIDEiDavG~kR~ 413 (752)
T KOG0734|consen 339 GVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMFVGVGARRVRDLFAAAKAR-----APCIIFIDEIDAVGGKRN 413 (752)
T ss_pred ceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhhhhcccHHHHHHHHHHHHhc-----CCeEEEEechhhhcccCC
Confidence 788999999999999999999999999999999999999999999999999999854 899999999999777665
Q ss_pred -CCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccccCCCCCCCcceecC--CCHHHHHHH
Q 020787 135 -NTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQ--PNLEDILNI 211 (321)
Q Consensus 135 -~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpALlRpGRfDr~i~~--Pd~~~R~~I 211 (321)
..+. -.+|.++ |||..||| |.+ +.+|.||+|||+|++||+||+||||||+++.+ ||...|.+|
T Consensus 414 ~~~~~-y~kqTlN-QLLvEmDG---------F~q---NeGiIvigATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eI 479 (752)
T KOG0734|consen 414 PSDQH-YAKQTLN-QLLVEMDG---------FKQ---NEGIIVIGATNFPEALDKALTRPGRFDRHVTVPLPDVRGRTEI 479 (752)
T ss_pred ccHHH-HHHHHHH-HHHHHhcC---------cCc---CCceEEEeccCChhhhhHHhcCCCccceeEecCCCCcccHHHH
Confidence 3332 2245554 67777774 333 56899999999999999999999999999986 899999999
Q ss_pred HHHHhhcCCCC-HHHHHHhhhCCCCCcchhhHHHHHhHhHHHHHHHH
Q 020787 212 VHRMYEKDGIT-KDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWI 257 (321)
Q Consensus 212 l~~~~~~~~l~-~~dl~~L~d~f~gq~idf~gAlra~~~d~~~~~~i 257 (321)
|..++++...+ ..|+.-|+.+.|| |.||..+++...++..+.
T Consensus 480 L~~yl~ki~~~~~VD~~iiARGT~G----FsGAdLaNlVNqAAlkAa 522 (752)
T KOG0734|consen 480 LKLYLSKIPLDEDVDPKIIARGTPG----FSGADLANLVNQAALKAA 522 (752)
T ss_pred HHHHHhcCCcccCCCHhHhccCCCC----CchHHHHHHHHHHHHHHH
Confidence 99999998876 5788888877766 778888888777655443
No 16
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-39 Score=322.69 Aligned_cols=184 Identities=20% Similarity=0.298 Sum_probs=154.5
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeeccccccccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeecccccCCCCC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG 134 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~~r~~ 134 (321)
.++||||||||||++|+|+|++++++|+.++++++.++|+||+|++||++|+.|++. +||||||||||++++.++
T Consensus 278 giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk~vGesek~ir~~F~~A~~~-----~p~iiFiDEiDs~~~~r~ 352 (494)
T COG0464 278 GVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSKWVGESEKNIRELFEKARKL-----APSIIFIDEIDSLASGRG 352 (494)
T ss_pred eeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhccccchHHHHHHHHHHHHHcC-----CCcEEEEEchhhhhccCC
Confidence 899999999999999999999999999999999999999999999999999999955 899999999999998876
Q ss_pred CCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccccCCCCCCCcceecC--CCHHHHHHHH
Q 020787 135 NTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQ--PNLEDILNIV 212 (321)
Q Consensus 135 ~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpALlRpGRfDr~i~~--Pd~~~R~~Il 212 (321)
.+..+. ..+++++|++.||+. +...+|.||+|||+|+.||||++||||||+.+++ ||.++|.+|+
T Consensus 353 ~~~~~~-~~r~~~~lL~~~d~~------------e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~ 419 (494)
T COG0464 353 PSEDGS-GRRVVGQLLTELDGI------------EKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIF 419 (494)
T ss_pred CCCchH-HHHHHHHHHHHhcCC------------CccCceEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHH
Confidence 433222 357888999999853 1256799999999999999999999999998875 8999999999
Q ss_pred HHHhhcCCC---CHHHHHHhhhCCCCCcchhhHHHHHhHhHHHHHHHHHhc
Q 020787 213 HRMYEKDGI---TKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDI 260 (321)
Q Consensus 213 ~~~~~~~~l---~~~dl~~L~d~f~gq~idf~gAlra~~~d~~~~~~i~~~ 260 (321)
+.++++... ...++..++... -+|+||..+.++.++....+.+.
T Consensus 420 ~~~~~~~~~~~~~~~~~~~l~~~t----~~~sgadi~~i~~ea~~~~~~~~ 466 (494)
T COG0464 420 KIHLRDKKPPLAEDVDLEELAEIT----EGYSGADIAALVREAALEALREA 466 (494)
T ss_pred HHHhcccCCcchhhhhHHHHHHHh----cCCCHHHHHHHHHHHHHHHHHHh
Confidence 999985432 245555555422 23777777888888777777766
No 17
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=7.4e-38 Score=326.12 Aligned_cols=223 Identities=19% Similarity=0.225 Sum_probs=171.4
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeeccccccccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeecccccCCCCC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG 134 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~~r~~ 134 (321)
.++||||||||||++|+++|++++++|+.++++++.++|+||+|+.||++|+.|++. +||||||||||+++++++
T Consensus 489 giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~vGese~~i~~~f~~A~~~-----~p~iifiDEid~l~~~r~ 563 (733)
T TIGR01243 489 GVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVGESEKAIREIFRKARQA-----APAIIFFDEIDAIAPARG 563 (733)
T ss_pred eEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhcccCcHHHHHHHHHHHHHhc-----CCEEEEEEChhhhhccCC
Confidence 468999999999999999999999999999999999999999999999999999865 899999999999998776
Q ss_pred CCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccccCCCCCCCcceecC--CCHHHHHHHH
Q 020787 135 NTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQ--PNLEDILNIV 212 (321)
Q Consensus 135 ~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpALlRpGRfDr~i~~--Pd~~~R~~Il 212 (321)
........+++..+|++.||+.. ...+|.||+|||+|+.||||++||||||+.+++ |+.++|.+|+
T Consensus 564 ~~~~~~~~~~~~~~lL~~ldg~~------------~~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~ 631 (733)
T TIGR01243 564 ARFDTSVTDRIVNQLLTEMDGIQ------------ELSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIF 631 (733)
T ss_pred CCCCccHHHHHHHHHHHHhhccc------------CCCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHH
Confidence 33222234567778999998521 145899999999999999999999999998875 8999999999
Q ss_pred HHHhhcCCCCH-HHHHHhhhCCCCCcchhhHHHHHhHhHHHHHHHHHhccCc---ccc--------cchhhcccCCCCCC
Q 020787 213 HRMYEKDGITK-DEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGV---ENL--------GNKLLKRRKDKELP 280 (321)
Q Consensus 213 ~~~~~~~~l~~-~dl~~L~d~f~gq~idf~gAlra~~~d~~~~~~i~~~~g~---~~~--------~~~lv~~~~~~~~~ 280 (321)
+.++++.+++. .|+..|+.... .|.||..+.++.++...++.+.-+. +.+ ....+..+++.++.
T Consensus 632 ~~~~~~~~~~~~~~l~~la~~t~----g~sgadi~~~~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~al 707 (733)
T TIGR01243 632 KIHTRSMPLAEDVDLEELAEMTE----GYTGADIEAVCREAAMAALRESIGSPAKEKLEVGEEEFLKDLKVEMRHFLEAL 707 (733)
T ss_pred HHHhcCCCCCccCCHHHHHHHcC----CCCHHHHHHHHHHHHHHHHHHHhhhccchhhhcccccccccCcccHHHHHHHH
Confidence 99988876643 45555554333 3667777777887777666643111 111 11133444444445
Q ss_pred cccCCcCCHHHHHHHHHH
Q 020787 281 VFTPPEKTVEALLESGYS 298 (321)
Q Consensus 281 ~~~~~~~s~~~l~~~g~~ 298 (321)
.-.+|++|-+++.+|.+.
T Consensus 708 ~~~~ps~~~~~~~~~~~~ 725 (733)
T TIGR01243 708 KKVKPSVSKEDMLRYERL 725 (733)
T ss_pred HHcCCCCCHHHHHHHHHH
Confidence 556778887777766543
No 18
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.4e-38 Score=325.82 Aligned_cols=176 Identities=18% Similarity=0.261 Sum_probs=142.5
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeeccccccccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeecccccCCCCC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG 134 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~~r~~ 134 (321)
..+|+||||||||+||+|+|.|.|++|+.|||+|++..++|-.+.++|++|..|+.. +|||||||||||.+++++
T Consensus 346 GvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~~g~~asrvr~lf~~ar~~-----aP~iifideida~~~~r~ 420 (774)
T KOG0731|consen 346 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMFVGVGASRVRDLFPLARKN-----APSIIFIDEIDAVGRKRG 420 (774)
T ss_pred ceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHhcccchHHHHHHHHHhhcc-----CCeEEEeccccccccccc
Confidence 789999999999999999999999999999999999999999999999999999965 899999999999887663
Q ss_pred --C--CccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccccCCCCCCCcceecC--CCHHHH
Q 020787 135 --N--TQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQ--PNLEDI 208 (321)
Q Consensus 135 --~--t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpALlRpGRfDr~i~~--Pd~~~R 208 (321)
. .+.+...+.+ .||+..||+- .....|.|+++||||+.|||||+|||||||.+.+ |+..+|
T Consensus 421 G~~~~~~~~e~e~tl-nQll~emDgf------------~~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r 487 (774)
T KOG0731|consen 421 GKGTGGGQDEREQTL-NQLLVEMDGF------------ETSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGR 487 (774)
T ss_pred ccccCCCChHHHHHH-HHHHHHhcCC------------cCCCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhh
Confidence 1 2223323433 4677777742 2246899999999999999999999999998885 999999
Q ss_pred HHHHHHHhhcCCC--CHHHHHHhhhCCCCCcchhhHHHHHhHhHHH
Q 020787 209 LNIVHRMYEKDGI--TKDEVGSIVKTFPNQALDFYGALRSRTYDRS 252 (321)
Q Consensus 209 ~~Il~~~~~~~~l--~~~dl~~L~d~f~gq~idf~gAlra~~~d~~ 252 (321)
.+||+.|.++..+ +..|+.+|+...|| |.||+.+.+|.++
T Consensus 488 ~~i~~~h~~~~~~~~e~~dl~~~a~~t~g----f~gadl~n~~nea 529 (774)
T KOG0731|consen 488 ASILKVHLRKKKLDDEDVDLSKLASLTPG----FSGADLANLCNEA 529 (774)
T ss_pred HHHHHHHhhccCCCcchhhHHHHHhcCCC----CcHHHHHhhhhHH
Confidence 9999999987766 34555555543332 4555555555554
No 19
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-37 Score=313.84 Aligned_cols=198 Identities=23% Similarity=0.364 Sum_probs=164.9
Q ss_pred CCCCcchhhhHHHH-HHhhhhhhccCccccchhhhh--------HhccccCCCCcHHHHHHHHHHHcCC-ceEEeecccc
Q 020787 20 FLGKDSDIVFDYRQ-KVTRSFEYLQGDYYIAPVFMA--------SLCIWGGKGQGKSFQTELIFQAMGI-EPVIMSAGEL 89 (321)
Q Consensus 20 ~~g~~~~i~~~~~~-~~~~~~~~~~~~~~~~p~f~~--------iLgL~GPPGcGKTllaravA~e~g~-~~i~vs~~eL 89 (321)
++|-|.....=+|. -+.|-| ||.+.. .++||||||||||++||.+-+-+++ ++-.|+|+|+
T Consensus 223 IGGLd~EFs~IFRRAFAsRvF---------pp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeI 293 (744)
T KOG0741|consen 223 IGGLDKEFSDIFRRAFASRVF---------PPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEI 293 (744)
T ss_pred cccchHHHHHHHHHHHHhhcC---------CHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHH
Confidence 45767666554443 366665 788877 7889999999999999999999998 7888999999
Q ss_pred ccccCCCcHHHHHHHHHHHHhhhhhcCC---ceEEEeecccccCCCCCCC--ccchhhHHHHHHHHhhcCCCCccccCcc
Q 020787 90 ESERAGEPGKLIRERYRTASQVVQNQGK---MSCLMINDIDAGLGRFGNT--QMTVNNQIVVGTLMNLSDNPTRVSIGQD 164 (321)
Q Consensus 90 ~s~~~GEser~IR~~F~~A~~~~~~~ga---PcILFIDEIDAg~~r~~~t--~~~v~~q~V~~tLl~llD~~~~vql~g~ 164 (321)
++||+||||++||.+|+.|.+.-+.+|. ..||+||||||+|++|+++ +.+|+++ |+.|||+-|||.
T Consensus 294 L~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~-VVNQLLsKmDGV-------- 364 (744)
T KOG0741|consen 294 LNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDT-VVNQLLSKMDGV-------- 364 (744)
T ss_pred HHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCCCCccHH-HHHHHHHhcccH--------
Confidence 9999999999999999999877665543 6799999999999988832 3457666 555899999953
Q ss_pred ccccCCCCCccEEEeeCCCCCccccCCCCCCCcceec--CCCHHHHHHHHHHHhhcC--------CCCHHHHHHhhhCCC
Q 020787 165 WRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYW--QPNLEDILNIVHRMYEKD--------GITKDEVGSIVKTFP 234 (321)
Q Consensus 165 ~~~~~~~~~V~VIaaTNrp~~LDpALlRpGRfDr~i~--~Pd~~~R~~Il~~~~~~~--------~l~~~dl~~L~d~f~ 234 (321)
++.+++.||+.|||.|.||.||+|||||+..+. +||++.|++||+.|++++ +|+.+++++++..|+
T Consensus 365 ----eqLNNILVIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfS 440 (744)
T KOG0741|consen 365 ----EQLNNILVIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFS 440 (744)
T ss_pred ----HhhhcEEEEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCc
Confidence 336799999999999999999999999998665 599999999999888765 477899999998888
Q ss_pred CCcch
Q 020787 235 NQALD 239 (321)
Q Consensus 235 gq~id 239 (321)
|+.|.
T Consensus 441 GAEle 445 (744)
T KOG0741|consen 441 GAELE 445 (744)
T ss_pred hhHHH
Confidence 87653
No 20
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3e-36 Score=308.78 Aligned_cols=224 Identities=17% Similarity=0.252 Sum_probs=160.8
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeeccccccccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeecccccCCCCC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG 134 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~~r~~ 134 (321)
..+|.||||||||+||||+|.|.+++|+.+|+|+++..|+|-+++.+|++|..|++. +|||||||||||....|+
T Consensus 185 GvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemfVGvGAsRVRdLF~qAkk~-----aP~IIFIDEiDAvGr~Rg 259 (596)
T COG0465 185 GVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKN-----APCIIFIDEIDAVGRQRG 259 (596)
T ss_pred ceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhhcCCCcHHHHHHHHHhhcc-----CCCeEEEehhhhcccccC
Confidence 889999999999999999999999999999999999999999999999999999955 899999999999776554
Q ss_pred -C--CccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccccCCCCCCCcceecC--CCHHHHH
Q 020787 135 -N--TQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQ--PNLEDIL 209 (321)
Q Consensus 135 -~--t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpALlRpGRfDr~i~~--Pd~~~R~ 209 (321)
+ .+.+.-.| ...+|+..||+ +.+ ...|.||+||||||.|||||+|||||||.+.+ ||...|+
T Consensus 260 ~g~GggnderEQ-TLNQlLvEmDG---------F~~---~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe 326 (596)
T COG0465 260 AGLGGGNDEREQ-TLNQLLVEMDG---------FGG---NEGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGRE 326 (596)
T ss_pred CCCCCCchHHHH-HHHHHHhhhcc---------CCC---CCceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHH
Confidence 2 22222123 44467777774 222 46899999999999999999999999998876 9999999
Q ss_pred HHHHHHhhcCCCC-HHHHHHhhhCCCCCcchhhHHHHHhHhHHHHHHHHHhc------cCcccccchhhcccCCCCCCcc
Q 020787 210 NIVHRMYEKDGIT-KDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDI------GGVENLGNKLLKRRKDKELPVF 282 (321)
Q Consensus 210 ~Il~~~~~~~~l~-~~dl~~L~d~f~gq~idf~gAlra~~~d~~~~~~i~~~------~g~~~~~~~lv~~~~~~~~~~~ 282 (321)
+||+.|.++.+++ ..|+..++...|| |.||..+++..++..-..... ..++.--.+++.-.++. ...+
T Consensus 327 ~IlkvH~~~~~l~~~Vdl~~iAr~tpG----fsGAdL~nl~NEAal~aar~n~~~i~~~~i~ea~drv~~G~erk-s~vi 401 (596)
T COG0465 327 QILKVHAKNKPLAEDVDLKKIARGTPG----FSGADLANLLNEAALLAARRNKKEITMRDIEEAIDRVIAGPERK-SRVI 401 (596)
T ss_pred HHHHHHhhcCCCCCcCCHHHHhhhCCC----cccchHhhhHHHHHHHHHHhcCeeEeccchHHHHHHHhcCcCcC-Cccc
Confidence 9999999877654 2344444444433 444555555544432222211 01111112333333331 2245
Q ss_pred cCCcCCHHHHHHHHHHHHH
Q 020787 283 TPPEKTVEALLESGYSLLR 301 (321)
Q Consensus 283 ~~~~~s~~~l~~~g~~l~~ 301 (321)
....--+-+--++|+.+++
T Consensus 402 se~ek~~~AYhEaghalv~ 420 (596)
T COG0465 402 SEAEKKITAYHEAGHALVG 420 (596)
T ss_pred ChhhhcchHHHHHHHHHHH
Confidence 5555566677777777765
No 21
>CHL00195 ycf46 Ycf46; Provisional
Probab=100.00 E-value=4.2e-36 Score=302.62 Aligned_cols=180 Identities=19% Similarity=0.283 Sum_probs=144.8
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeeccccccccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeecccccCCCCC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG 134 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~~r~~ 134 (321)
.++||||||||||++|+++|++++++|+.++.++++++|+|++|+.+|++|+.|+.. +||||||||||+++++++
T Consensus 261 GILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~vGese~~l~~~f~~A~~~-----~P~IL~IDEID~~~~~~~ 335 (489)
T CHL00195 261 GLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGIVGESESRMRQMIRIAEAL-----SPCILWIDEIDKAFSNSE 335 (489)
T ss_pred eEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccccChHHHHHHHHHHHHHhc-----CCcEEEehhhhhhhcccc
Confidence 689999999999999999999999999999999999999999999999999999865 899999999999876543
Q ss_pred C-CccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccccCCCCCCCcceecC--CCHHHHHHH
Q 020787 135 N-TQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQ--PNLEDILNI 211 (321)
Q Consensus 135 ~-t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpALlRpGRfDr~i~~--Pd~~~R~~I 211 (321)
+ ...+. ..++.++|++.|++. ..+|+||+|||+|+.|||||+|+||||+.+++ |+.++|.+|
T Consensus 336 ~~~d~~~-~~rvl~~lL~~l~~~--------------~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~I 400 (489)
T CHL00195 336 SKGDSGT-TNRVLATFITWLSEK--------------KSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKI 400 (489)
T ss_pred CCCCchH-HHHHHHHHHHHHhcC--------------CCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHH
Confidence 2 12222 345667888877621 35799999999999999999999999998875 999999999
Q ss_pred HHHHhhcCC---CCHHHHHHhhhCCCCCcchhhHHHHHhHhHHHHHHHHH
Q 020787 212 VHRMYEKDG---ITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWID 258 (321)
Q Consensus 212 l~~~~~~~~---l~~~dl~~L~d~f~gq~idf~gAlra~~~d~~~~~~i~ 258 (321)
++.++++.. .+..|+..|+.. +-+|.||..+.++.++...++.
T Consensus 401 l~~~l~~~~~~~~~~~dl~~La~~----T~GfSGAdI~~lv~eA~~~A~~ 446 (489)
T CHL00195 401 FKIHLQKFRPKSWKKYDIKKLSKL----SNKFSGAEIEQSIIEAMYIAFY 446 (489)
T ss_pred HHHHHhhcCCCcccccCHHHHHhh----cCCCCHHHHHHHHHHHHHHHHH
Confidence 999988753 234455555542 2346666666677666555543
No 22
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-36 Score=290.25 Aligned_cols=165 Identities=16% Similarity=0.261 Sum_probs=140.0
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeeccccccccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeecccccCCCCC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG 134 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~~r~~ 134 (321)
..+||||||||||.||+|||.|.+-.|++||+++|+|||.|||||+++.+|+.|+++ +|+||||||||+.|++++
T Consensus 168 giLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWmGESEkLVknLFemARe~-----kPSIIFiDEiDslcg~r~ 242 (439)
T KOG0739|consen 168 GILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKNLFEMAREN-----KPSIIFIDEIDSLCGSRS 242 (439)
T ss_pred eEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHhccHHHHHHHHHHHHHhc-----CCcEEEeehhhhhccCCC
Confidence 789999999999999999999999999999999999999999999999999999987 999999999999998876
Q ss_pred CCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccccCCCCCCCcceecC--CCHHHHHHHH
Q 020787 135 NTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQ--PNLEDILNIV 212 (321)
Q Consensus 135 ~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpALlRpGRfDr~i~~--Pd~~~R~~Il 212 (321)
...+. ..|++...+|-.|.|.. .+ ..+|.|++|||-|+.||.|++| |||+.||+ |+..+|..++
T Consensus 243 enEse-asRRIKTEfLVQMqGVG----------~d-~~gvLVLgATNiPw~LDsAIRR--RFekRIYIPLPe~~AR~~MF 308 (439)
T KOG0739|consen 243 ENESE-ASRRIKTEFLVQMQGVG----------ND-NDGVLVLGATNIPWVLDSAIRR--RFEKRIYIPLPEAHARARMF 308 (439)
T ss_pred CCchH-HHHHHHHHHHHhhhccc----------cC-CCceEEEecCCCchhHHHHHHH--HhhcceeccCCcHHHhhhhh
Confidence 32222 35778877875555421 22 4689999999999999999999 99998886 8999999999
Q ss_pred HHHhhcCC--CCHHHH---HHhhhCCCCCcc
Q 020787 213 HRMYEKDG--ITKDEV---GSIVKTFPNQAL 238 (321)
Q Consensus 213 ~~~~~~~~--l~~~dl---~~L~d~f~gq~i 238 (321)
+.++.+.+ ++..|+ .+-+++|+|++|
T Consensus 309 ~lhlG~tp~~LT~~d~~eL~~kTeGySGsDi 339 (439)
T KOG0739|consen 309 KLHLGDTPHVLTEQDFKELARKTEGYSGSDI 339 (439)
T ss_pred eeccCCCccccchhhHHHHHhhcCCCCcCce
Confidence 99988775 555555 555567777765
No 23
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=100.00 E-value=1.2e-34 Score=293.47 Aligned_cols=226 Identities=19% Similarity=0.283 Sum_probs=169.2
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCc----------eEEeeccccccccCCCcHHHHHHHHHHHHhhhhhcCCceEEEee
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIE----------PVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMIN 124 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~----------~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~~gaPcILFID 124 (321)
.++||||||||||++|+++|++++.+ |+.++++++.++|.||+++.+|.+|..|++.+. .++|||||||
T Consensus 218 GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~-~g~p~IIfID 296 (512)
T TIGR03689 218 GVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGPELLNKYVGETERQIRLIFQRAREKAS-DGRPVIVFFD 296 (512)
T ss_pred ceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccchhhcccccchHHHHHHHHHHHHHHHhh-cCCCceEEEe
Confidence 68999999999999999999998654 888999999999999999999999999987653 5789999999
Q ss_pred cccccCCCCC-CCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccccCCCCCCCcceecC-
Q 020787 125 DIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQ- 202 (321)
Q Consensus 125 EIDAg~~r~~-~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpALlRpGRfDr~i~~- 202 (321)
|||+++++++ +.+.+.. +.+..+|+++||+.. ...+|.||+|||+++.|||||+||||||++|++
T Consensus 297 EiD~L~~~R~~~~s~d~e-~~il~~LL~~LDgl~------------~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~ 363 (512)
T TIGR03689 297 EMDSIFRTRGSGVSSDVE-TTVVPQLLSELDGVE------------SLDNVIVIGASNREDMIDPAILRPGRLDVKIRIE 363 (512)
T ss_pred hhhhhhcccCCCccchHH-HHHHHHHHHHhcccc------------cCCceEEEeccCChhhCCHhhcCccccceEEEeC
Confidence 9999987665 3333443 456678999988531 135899999999999999999999999998874
Q ss_pred -CCHHHHHHHHHHHhhcC-CCCHHHHHHhhhCCCCCc------------------------------------chh-hHH
Q 020787 203 -PNLEDILNIVHRMYEKD-GITKDEVGSIVKTFPNQA------------------------------------LDF-YGA 243 (321)
Q Consensus 203 -Pd~~~R~~Il~~~~~~~-~l~~~dl~~L~d~f~gq~------------------------------------idf-~gA 243 (321)
|+.++|.+||+.++.+. ++ ..++.. .+++.+++ -|| +||
T Consensus 364 ~Pd~e~r~~Il~~~l~~~l~l-~~~l~~-~~g~~~a~~~al~~~av~~~~a~~~~~~~l~~~~~~g~~~~l~~~d~~sGa 441 (512)
T TIGR03689 364 RPDAEAAADIFSKYLTDSLPL-DADLAE-FDGDREATAAALIQRAVDHLYATSEENRYVEVTYANGSTEVLYFKDFVSGA 441 (512)
T ss_pred CCCHHHHHHHHHHHhhccCCc-hHHHHH-hcCCCHHHHHHHHHHHHHHHhhhhcccceeEEEecCCceeeEeecccccHH
Confidence 99999999999887653 34 222221 12222221 134 589
Q ss_pred HHHhHhHHHHHHHHHhccCcccccchhhcccCCCCCCcccCCcCCHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 020787 244 LRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEY 315 (321)
Q Consensus 244 lra~~~d~~~~~~i~~~~g~~~~~~~lv~~~~~~~~~~~~~~~~s~~~l~~~g~~l~~eq~~v~~~~l~~~y 315 (321)
+.+.+++.+-..+|++. ++ . ..+-+++++|+++=+.=-.|.+-+-++---+++
T Consensus 442 ~i~~iv~~a~~~ai~~~--~~----------~-------~~~~~~~~~l~~a~~~e~~~~~~~~~~~~~~~w 494 (512)
T TIGR03689 442 MIANIVDRAKKRAIKDH--IT----------G-------GQVGLRIEHLLAAVLDEFRESEDLPNTTNPDDW 494 (512)
T ss_pred HHHHHHHHHHHHHHHHH--Hh----------c-------CCcCcCHHHHHHHHHHhhcccccCCCCCCHHHH
Confidence 99999998888888765 00 0 124567788877655555555555444444444
No 24
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=5.9e-35 Score=287.57 Aligned_cols=181 Identities=17% Similarity=0.217 Sum_probs=143.6
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeeccccccccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeecccccCCCCC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG 134 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~~r~~ 134 (321)
.++||||||||||++|+++|++++++|+.++++++.++|.|++++.+|++|+.|+.. +||||||||||++++++.
T Consensus 181 gvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~k~~ge~~~~lr~lf~~A~~~-----~P~ILfIDEID~i~~~r~ 255 (398)
T PTZ00454 181 GVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQKYLGEGPRMVRDVFRLAREN-----APSIIFIDEVDSIATKRF 255 (398)
T ss_pred eEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHHHhcchhHHHHHHHHHHHHhc-----CCeEEEEECHhhhccccc
Confidence 688999999999999999999999999999999999999999999999999999855 899999999999886553
Q ss_pred --CCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccccCCCCCCCcceecC--CCHHHHHH
Q 020787 135 --NTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQ--PNLEDILN 210 (321)
Q Consensus 135 --~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpALlRpGRfDr~i~~--Pd~~~R~~ 210 (321)
.++.+...+.+..+|++.+|+. . ...+|.||+|||+|+.|||||+||||||+.|++ |+.++|.+
T Consensus 256 ~~~~~~d~~~~r~l~~LL~~ld~~---------~---~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~ 323 (398)
T PTZ00454 256 DAQTGADREVQRILLELLNQMDGF---------D---QTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRL 323 (398)
T ss_pred cccCCccHHHHHHHHHHHHHhhcc---------C---CCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHH
Confidence 2222223345555677766632 1 135799999999999999999999999998875 89999999
Q ss_pred HHHHHhhcCCCC----HHHHHHhhhCCCCCcchhhHHHHHhHhHHHHHHHHHh
Q 020787 211 IVHRMYEKDGIT----KDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDD 259 (321)
Q Consensus 211 Il~~~~~~~~l~----~~dl~~L~d~f~gq~idf~gAlra~~~d~~~~~~i~~ 259 (321)
|++.++++.+++ ..++...+++| .||....+|.++....+.+
T Consensus 324 Il~~~~~~~~l~~dvd~~~la~~t~g~-------sgaDI~~l~~eA~~~A~r~ 369 (398)
T PTZ00454 324 IFQTITSKMNLSEEVDLEDFVSRPEKI-------SAADIAAICQEAGMQAVRK 369 (398)
T ss_pred HHHHHHhcCCCCcccCHHHHHHHcCCC-------CHHHHHHHHHHHHHHHHHc
Confidence 999999887654 34444444444 4555555666555444433
No 25
>CHL00206 ycf2 Ycf2; Provisional
Probab=100.00 E-value=9.9e-35 Score=321.68 Aligned_cols=175 Identities=13% Similarity=0.086 Sum_probs=132.8
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeecccccccc----------CCC----------------------------
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESER----------AGE---------------------------- 96 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~~----------~GE---------------------------- 96 (321)
.++|+||||||||+||+|+|++++++||.|++++++++| +||
T Consensus 1632 GILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~~e~~n~~~~~ 1711 (2281)
T CHL00206 1632 GILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTELLTMMNALTMD 1711 (2281)
T ss_pred ceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccchhhhhhcchhhhh
Confidence 889999999999999999999999999999999999876 333
Q ss_pred ---cHHH--HHHHHHHHHhhhhhcCCceEEEeecccccCCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCC
Q 020787 97 ---PGKL--IRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDIT 171 (321)
Q Consensus 97 ---ser~--IR~~F~~A~~~~~~~gaPcILFIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~ 171 (321)
+++. ||++|+.|+++ +||||||||||+++.+.. .....++|++.||+- ......
T Consensus 1712 m~~~e~~~rIr~lFelARk~-----SPCIIFIDEIDaL~~~ds-------~~ltL~qLLneLDg~---------~~~~s~ 1770 (2281)
T CHL00206 1712 MMPKIDRFYITLQFELAKAM-----SPCIIWIPNIHDLNVNES-------NYLSLGLLVNSLSRD---------CERCST 1770 (2281)
T ss_pred hhhhhhHHHHHHHHHHHHHC-----CCeEEEEEchhhcCCCcc-------ceehHHHHHHHhccc---------cccCCC
Confidence 3344 99999999976 899999999999986511 123357888998842 111124
Q ss_pred CCccEEEeeCCCCCccccCCCCCCCcceecC--CCHHHHHHHHHHHh--hcCC-----CCHHHHHHhhhCCCCCcchhhH
Q 020787 172 NRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQ--PNLEDILNIVHRMY--EKDG-----ITKDEVGSIVKTFPNQALDFYG 242 (321)
Q Consensus 172 ~~V~VIaaTNrp~~LDpALlRpGRfDr~i~~--Pd~~~R~~Il~~~~--~~~~-----l~~~dl~~L~d~f~gq~idf~g 242 (321)
.+|.||||||||+.|||||+||||||+.|.+ |+..+|.+|+..+. ++.. ++..++++.+.+|+|
T Consensus 1771 ~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSG------- 1843 (2281)
T CHL00206 1771 RNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNA------- 1843 (2281)
T ss_pred CCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCH-------
Confidence 6899999999999999999999999999986 89999999887543 2222 334455555555554
Q ss_pred HHHHhHhHHHHHHHH
Q 020787 243 ALRSRTYDRSISKWI 257 (321)
Q Consensus 243 Alra~~~d~~~~~~i 257 (321)
|..+.++.+|+.-.+
T Consensus 1844 ADLanLvNEAaliAi 1858 (2281)
T CHL00206 1844 RDLVALTNEALSISI 1858 (2281)
T ss_pred HHHHHHHHHHHHHHH
Confidence 555555555544433
No 26
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=100.00 E-value=8.2e-34 Score=277.26 Aligned_cols=184 Identities=20% Similarity=0.238 Sum_probs=142.7
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeeccccccccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeecccccCCCCC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG 134 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~~r~~ 134 (321)
.++||||||||||++|+++|++++.+|+.++++++.++|+|++++.+|++|..|+.. +||||||||||+++++++
T Consensus 167 gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~-----~p~IlfiDEiD~l~~~r~ 241 (389)
T PRK03992 167 GVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQKFIGEGARLVRELFELAREK-----APSIIFIDEIDAIAAKRT 241 (389)
T ss_pred ceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhHhhccchHHHHHHHHHHHHhc-----CCeEEEEechhhhhcccc
Confidence 589999999999999999999999999999999999999999999999999999855 899999999999887665
Q ss_pred CCc--cchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccccCCCCCCCcceecC--CCHHHHHH
Q 020787 135 NTQ--MTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQ--PNLEDILN 210 (321)
Q Consensus 135 ~t~--~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpALlRpGRfDr~i~~--Pd~~~R~~ 210 (321)
+.+ .....+....+|++.+|+. ....+|.||+|||+++.||+||+||||||+.|++ |+.++|.+
T Consensus 242 ~~~~~~~~~~~~~l~~lL~~ld~~------------~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~ 309 (389)
T PRK03992 242 DSGTSGDREVQRTLMQLLAEMDGF------------DPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLE 309 (389)
T ss_pred cCCCCccHHHHHHHHHHHHhcccc------------CCCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHH
Confidence 222 1122233334455555531 1135799999999999999999999999998875 99999999
Q ss_pred HHHHHhhcCCCCH-HHHHHhhhCCCCCcchhhHHHHHhHhHHHHHHHHHh
Q 020787 211 IVHRMYEKDGITK-DEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDD 259 (321)
Q Consensus 211 Il~~~~~~~~l~~-~dl~~L~d~f~gq~idf~gAlra~~~d~~~~~~i~~ 259 (321)
||+.++++..++. .++..|+..+. +|.||..+.++.++...++.+
T Consensus 310 Il~~~~~~~~~~~~~~~~~la~~t~----g~sgadl~~l~~eA~~~a~~~ 355 (389)
T PRK03992 310 ILKIHTRKMNLADDVDLEELAELTE----GASGADLKAICTEAGMFAIRD 355 (389)
T ss_pred HHHHHhccCCCCCcCCHHHHHHHcC----CCCHHHHHHHHHHHHHHHHHc
Confidence 9999988776542 34444443222 355566666666666555544
No 27
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.2e-34 Score=292.67 Aligned_cols=234 Identities=19% Similarity=0.240 Sum_probs=178.1
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeeccccccccCCCcHHHHHHHHHHHHhhhhhcCC-ceEEEeecccccCCCC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGK-MSCLMINDIDAGLGRF 133 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~~ga-PcILFIDEIDAg~~r~ 133 (321)
.+++|||||||||++++|||++.++.++.++++||++++.||+|+.+|+.|++|... + |+||||||||++||++
T Consensus 220 g~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~~gEte~~LR~~f~~a~k~-----~~psii~IdEld~l~p~r 294 (693)
T KOG0730|consen 220 GLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKFPGETESNLRKAFAEALKF-----QVPSIIFIDELDALCPKR 294 (693)
T ss_pred CccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhcccchHHHHHHHHHHHhcc-----CCCeeEeHHhHhhhCCcc
Confidence 789999999999999999999999999999999999999999999999999999865 6 9999999999999998
Q ss_pred CCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccccCCCCCCCcceec--CCCHHHHHHH
Q 020787 134 GNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYW--QPNLEDILNI 211 (321)
Q Consensus 134 ~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpALlRpGRfDr~i~--~Pd~~~R~~I 211 (321)
..+.. +.++++++|+++||+.. ...+|.||+|||||++|||+|+| ||||+.+. +|+..+|.+|
T Consensus 295 ~~~~~--~e~Rv~sqlltL~dg~~------------~~~~vivl~atnrp~sld~alRR-gRfd~ev~IgiP~~~~RldI 359 (693)
T KOG0730|consen 295 EGADD--VESRVVSQLLTLLDGLK------------PDAKVIVLAATNRPDSLDPALRR-GRFDREVEIGIPGSDGRLDI 359 (693)
T ss_pred cccch--HHHHHHHHHHHHHhhCc------------CcCcEEEEEecCCccccChhhhc-CCCcceeeecCCCchhHHHH
Confidence 86654 46788999999999531 14689999999999999999999 99999776 5999999999
Q ss_pred HHHHhhcCCCC-HHHHHHhhhCCCCCcchhhHHHHHhHhHHHHHHHHHhccCcccccchhhcccC-CCCCCcccCCcCCH
Q 020787 212 VHRMYEKDGIT-KDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRK-DKELPVFTPPEKTV 289 (321)
Q Consensus 212 l~~~~~~~~l~-~~dl~~L~d~f~gq~idf~gAlra~~~d~~~~~~i~~~~g~~~~~~~lv~~~~-~~~~~~~~~~~~s~ 289 (321)
++.++++.+.. ..|+..++.... .|-||..+.+|.++....+... .+++-..+.+.+. ...-+..+.|++|.
T Consensus 360 l~~l~k~~~~~~~~~l~~iA~~th----GyvGaDL~~l~~ea~~~~~r~~--~~~~~~A~~~i~psa~Re~~ve~p~v~W 433 (693)
T KOG0730|consen 360 LRVLTKKMNLLSDVDLEDIAVSTH----GYVGADLAALCREASLQATRRT--LEIFQEALMGIRPSALREILVEMPNVSW 433 (693)
T ss_pred HHHHHHhcCCcchhhHHHHHHHcc----chhHHHHHHHHHHHHHHHhhhh--HHHHHHHHhcCCchhhhheeccCCCCCh
Confidence 99999999865 677877776444 3677777777777766555551 0111111111100 00124577899998
Q ss_pred HHHHHHHHHHHHH-HHHHH-hhhhHHHH
Q 020787 290 EALLESGYSLLRE-QQLIM-ETKLSKEY 315 (321)
Q Consensus 290 ~~l~~~g~~l~~e-q~~v~-~~~l~~~y 315 (321)
++.=-. +.++.| ||.|+ -++-++.|
T Consensus 434 ~dIGGl-E~lK~elq~~V~~p~~~pe~F 460 (693)
T KOG0730|consen 434 DDIGGL-EELKRELQQAVEWPLKHPEKF 460 (693)
T ss_pred hhccCH-HHHHHHHHHHHhhhhhchHHH
Confidence 875433 334443 44443 23334444
No 28
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-34 Score=280.61 Aligned_cols=167 Identities=22% Similarity=0.381 Sum_probs=144.5
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeeccccccccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeecccccCCCCC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG 134 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~~r~~ 134 (321)
+++||||||||||++|+|+|++.|++||.|+.++|.+||.||++|+++.+|-.|.+. +||||||||||+..+.|.
T Consensus 129 GiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~KWfgE~eKlv~AvFslAsKl-----~P~iIFIDEvds~L~~R~ 203 (386)
T KOG0737|consen 129 GILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTSKWFGEAQKLVKAVFSLASKL-----QPSIIFIDEVDSFLGQRR 203 (386)
T ss_pred cceecCCCCchHHHHHHHHHHHcCCCcceeeccccchhhHHHHHHHHHHHHhhhhhc-----CcceeehhhHHHHHhhcc
Confidence 789999999999999999999999999999999999999999999999999999976 899999999999877664
Q ss_pred CCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccccCCCCCCCcceec--CCCHHHHHHHH
Q 020787 135 NTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYW--QPNLEDILNIV 212 (321)
Q Consensus 135 ~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpALlRpGRfDr~i~--~Pd~~~R~~Il 212 (321)
++......++.+++|.+.||. .+.+ ..+|.|++|||||.+||.|.+| ||-+.+. +|+.++|..||
T Consensus 204 -s~dHEa~a~mK~eFM~~WDGl---------~s~~-~~rVlVlgATNRP~DlDeAiiR--R~p~rf~V~lP~~~qR~kIL 270 (386)
T KOG0737|consen 204 -STDHEATAMMKNEFMALWDGL---------SSKD-SERVLVLGATNRPFDLDEAIIR--RLPRRFHVGLPDAEQRRKIL 270 (386)
T ss_pred -cchHHHHHHHHHHHHHHhccc---------cCCC-CceEEEEeCCCCCccHHHHHHH--hCcceeeeCCCchhhHHHHH
Confidence 333334678889999998863 2222 4579999999999999999999 9998555 59999999999
Q ss_pred HHHhhcCCC----CHHHHHHhhhCCCCCcch
Q 020787 213 HRMYEKDGI----TKDEVGSIVKTFPNQALD 239 (321)
Q Consensus 213 ~~~~~~~~l----~~~dl~~L~d~f~gq~id 239 (321)
+.++++..+ +..+++.++++|+|.+|-
T Consensus 271 kviLk~e~~e~~vD~~~iA~~t~GySGSDLk 301 (386)
T KOG0737|consen 271 KVILKKEKLEDDVDLDEIAQMTEGYSGSDLK 301 (386)
T ss_pred HHHhcccccCcccCHHHHHHhcCCCcHHHHH
Confidence 999998765 567778888888887663
No 29
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=100.00 E-value=5.1e-33 Score=278.10 Aligned_cols=181 Identities=15% Similarity=0.220 Sum_probs=144.0
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeeccccccccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeecccccCCCCC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG 134 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~~r~~ 134 (321)
.++||||||||||++|+++|++++++|+.++++++.+.|.|++++.+|++|+.|+.. +||||||||||+++++++
T Consensus 90 giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~~g~~~~~l~~~f~~a~~~-----~p~Il~iDEid~l~~~r~ 164 (495)
T TIGR01241 90 GVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKN-----APCIIFIDEIDAVGRQRG 164 (495)
T ss_pred cEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHHHhcccHHHHHHHHHHHHhc-----CCCEEEEechhhhhhccc
Confidence 689999999999999999999999999999999999999999999999999999855 899999999999987665
Q ss_pred C-Cc-cchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccccCCCCCCCcceecC--CCHHHHHH
Q 020787 135 N-TQ-MTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQ--PNLEDILN 210 (321)
Q Consensus 135 ~-t~-~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpALlRpGRfDr~i~~--Pd~~~R~~ 210 (321)
. .+ .....+.+..+|++.||+. .+ ..+|.||+|||+|+.|||||+||||||+.+.+ |+.++|.+
T Consensus 165 ~~~~~~~~~~~~~~~~lL~~~d~~---------~~---~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~ 232 (495)
T TIGR01241 165 AGLGGGNDEREQTLNQLLVEMDGF---------GT---NTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREE 232 (495)
T ss_pred cCcCCccHHHHHHHHHHHhhhccc---------cC---CCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHH
Confidence 2 21 1222234556788888842 11 35799999999999999999999999998875 99999999
Q ss_pred HHHHHhhcCCCC-HHHHHHhhhCCCCCcchhhHHHHHhHhHHHHHHH
Q 020787 211 IVHRMYEKDGIT-KDEVGSIVKTFPNQALDFYGALRSRTYDRSISKW 256 (321)
Q Consensus 211 Il~~~~~~~~l~-~~dl~~L~d~f~gq~idf~gAlra~~~d~~~~~~ 256 (321)
|++.+++...+. ..++..+++..+| |.||..+.++.++....
T Consensus 233 il~~~l~~~~~~~~~~l~~la~~t~G----~sgadl~~l~~eA~~~a 275 (495)
T TIGR01241 233 ILKVHAKNKKLAPDVDLKAVARRTPG----FSGADLANLLNEAALLA 275 (495)
T ss_pred HHHHHHhcCCCCcchhHHHHHHhCCC----CCHHHHHHHHHHHHHHH
Confidence 999998876553 3455555544333 55555555665554433
No 30
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=100.00 E-value=1.1e-33 Score=281.93 Aligned_cols=167 Identities=20% Similarity=0.235 Sum_probs=135.4
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeeccccccccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeecccccCCCCC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG 134 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~~r~~ 134 (321)
.++||||||||||++|+++|++++.+|+.+++++|.++|.|++++.+|++|+.|+.. +||||||||||+++.++.
T Consensus 219 gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~k~~Ge~~~~vr~lF~~A~~~-----~P~ILfIDEID~l~~kR~ 293 (438)
T PTZ00361 219 GVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEN-----APSIVFIDEIDAIGTKRY 293 (438)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhhhhcchHHHHHHHHHHHHHhC-----CCcEEeHHHHHHHhccCC
Confidence 588999999999999999999999999999999999999999999999999999854 899999999999887654
Q ss_pred C--CccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccccCCCCCCCcceecC--CCHHHHHH
Q 020787 135 N--TQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQ--PNLEDILN 210 (321)
Q Consensus 135 ~--t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpALlRpGRfDr~i~~--Pd~~~R~~ 210 (321)
. ++.+...+.+..+|++.+|+. . ...+|.||+|||+++.|||+|+||||||+.|.+ ||.++|.+
T Consensus 294 ~~~sgg~~e~qr~ll~LL~~Ldg~---------~---~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~ 361 (438)
T PTZ00361 294 DATSGGEKEIQRTMLELLNQLDGF---------D---SRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRR 361 (438)
T ss_pred CCCCcccHHHHHHHHHHHHHHhhh---------c---ccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHH
Confidence 2 222222233344556666631 1 135799999999999999999999999998875 89999999
Q ss_pred HHHHHhhcCCC----CHHHHHHhhhCCCCCcc
Q 020787 211 IVHRMYEKDGI----TKDEVGSIVKTFPNQAL 238 (321)
Q Consensus 211 Il~~~~~~~~l----~~~dl~~L~d~f~gq~i 238 (321)
||+.++++..+ +.+++...+++|+|++|
T Consensus 362 Il~~~~~k~~l~~dvdl~~la~~t~g~sgAdI 393 (438)
T PTZ00361 362 IFEIHTSKMTLAEDVDLEEFIMAKDELSGADI 393 (438)
T ss_pred HHHHHHhcCCCCcCcCHHHHHHhcCCCCHHHH
Confidence 99999887754 44566666666665544
No 31
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.98 E-value=6.9e-33 Score=262.44 Aligned_cols=169 Identities=20% Similarity=0.238 Sum_probs=143.6
Q ss_pred chhhhh----HhccccCCCCcHHHHHHHHHHHcCCceEEeeccccccccCCCcHHHHHHHHHHHHhhhhhcCCceEEEee
Q 020787 49 APVFMA----SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMIN 124 (321)
Q Consensus 49 ~p~f~~----iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~~gaPcILFID 124 (321)
|.+|-+ -.++|||||||||++|+|+|++..++|+.|++.+|+.+|+|+..+.||++|.+|++. +|||+|||
T Consensus 143 Pe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGehVGdgar~Ihely~rA~~~-----aPcivFiD 217 (368)
T COG1223 143 PERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHVGDGARRIHELYERARKA-----APCIVFID 217 (368)
T ss_pred hHHhcccCcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHHhhhHHHHHHHHHHHHHhc-----CCeEEEeh
Confidence 556665 789999999999999999999999999999999999999999999999999999977 89999999
Q ss_pred cccccCCCCC--CCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccccCCCCCCCcceec-
Q 020787 125 DIDAGLGRFG--NTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYW- 201 (321)
Q Consensus 125 EIDAg~~r~~--~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpALlRpGRfDr~i~- 201 (321)
|+||++-.|. .-.++| + .++..||+.||+.. + ..+|.-|+|||+|+.||||.+- ||+.+|.
T Consensus 218 E~DAiaLdRryQelRGDV-s-EiVNALLTelDgi~---------e---neGVvtIaaTN~p~~LD~aiRs--RFEeEIEF 281 (368)
T COG1223 218 ELDAIALDRRYQELRGDV-S-EIVNALLTELDGIK---------E---NEGVVTIAATNRPELLDPAIRS--RFEEEIEF 281 (368)
T ss_pred hhhhhhhhhhHHHhcccH-H-HHHHHHHHhccCcc---------c---CCceEEEeecCChhhcCHHHHh--hhhheeee
Confidence 9999764332 222344 3 44556888888632 1 4589999999999999999887 9999886
Q ss_pred -CCCHHHHHHHHHHHhhcCCCC----HHHHHHhhhCCCCCcc
Q 020787 202 -QPNLEDILNIVHRMYEKDGIT----KDEVGSIVKTFPNQAL 238 (321)
Q Consensus 202 -~Pd~~~R~~Il~~~~~~~~l~----~~dl~~L~d~f~gq~i 238 (321)
+|+.++|.+||+...++.++. ...+.+.+.+|+|.+|
T Consensus 282 ~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgRdi 323 (368)
T COG1223 282 KLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDI 323 (368)
T ss_pred eCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCCCchhH
Confidence 699999999999999988753 6778888889999876
No 32
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=3.3e-32 Score=291.00 Aligned_cols=182 Identities=19% Similarity=0.245 Sum_probs=148.2
Q ss_pred HhccccCCCCcHHHHHHHHHHHcC-----CceEEeeccccccccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeeccccc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMG-----IEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAG 129 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g-----~~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg 129 (321)
.+++|||||+|||+.|+|+|..+. +.|..-+++++.|+|+||.||.+|.+|++|+.. +|+|||+||||-+
T Consensus 301 gvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD~lskwvgEaERqlrllFeeA~k~-----qPSIIffdeIdGl 375 (1080)
T KOG0732|consen 301 GVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGADCLSKWVGEAERQLRLLFEEAQKT-----QPSIIFFDEIDGL 375 (1080)
T ss_pred ceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCchhhccccCcHHHHHHHHHHHHhcc-----CceEEeccccccc
Confidence 899999999999999999999885 689999999999999999999999999999955 9999999999999
Q ss_pred CCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccccCCCCCCCcceec--CCCHHH
Q 020787 130 LGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYW--QPNLED 207 (321)
Q Consensus 130 ~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpALlRpGRfDr~i~--~Pd~~~ 207 (321)
+|-+..-|.-.+. .|+.|||.+|||. +....|.||+|||||+++||||+||||||+++| +|+.++
T Consensus 376 apvrSskqEqih~-SIvSTLLaLmdGl------------dsRgqVvvigATnRpda~dpaLRRPgrfdref~f~lp~~~a 442 (1080)
T KOG0732|consen 376 APVRSSKQEQIHA-SIVSTLLALMDGL------------DSRGQVVVIGATNRPDAIDPALRRPGRFDREFYFPLPDVDA 442 (1080)
T ss_pred cccccchHHHhhh-hHHHHHHHhccCC------------CCCCceEEEcccCCccccchhhcCCcccceeEeeeCCchHH
Confidence 9877644433333 4678999999952 336789999999999999999999999999777 499999
Q ss_pred HHHHHHHHhhcCC--CCHHHHHHhhhCCCCCcchhhHHHHHhHhHHHHHHHHH
Q 020787 208 ILNIVHRMYEKDG--ITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWID 258 (321)
Q Consensus 208 R~~Il~~~~~~~~--l~~~dl~~L~d~f~gq~idf~gAlra~~~d~~~~~~i~ 258 (321)
|..|+..++++.. ++..-+..|+...+ .+-||+...+|.+++...+.
T Consensus 443 r~~Il~Ihtrkw~~~i~~~l~~~la~~t~----gy~gaDlkaLCTeAal~~~~ 491 (1080)
T KOG0732|consen 443 RAKILDIHTRKWEPPISRELLLWLAEETS----GYGGADLKALCTEAALIALR 491 (1080)
T ss_pred HHHHHHHhccCCCCCCCHHHHHHHHHhcc----ccchHHHHHHHHHHhhhhhc
Confidence 9999999998764 66655555554333 24445555555555444443
No 33
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.97 E-value=1.8e-31 Score=256.78 Aligned_cols=181 Identities=19% Similarity=0.251 Sum_probs=141.9
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeeccccccccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeecccccCCCCC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG 134 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~~r~~ 134 (321)
.++||||||||||++|+++|++++.+|+.++++++.++|.|++++.++++|+.|+.. +||||||||||+++.++.
T Consensus 158 gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~-----~p~il~iDEiD~l~~~~~ 232 (364)
T TIGR01242 158 GVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVRKYIGEGARLVREIFELAKEK-----APSIIFIDEIDAIAAKRT 232 (364)
T ss_pred eEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHHHhhhHHHHHHHHHHHHHHhc-----CCcEEEhhhhhhhccccc
Confidence 589999999999999999999999999999999999999999999999999999754 899999999999876554
Q ss_pred --CCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccccCCCCCCCcceecC--CCHHHHHH
Q 020787 135 --NTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQ--PNLEDILN 210 (321)
Q Consensus 135 --~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpALlRpGRfDr~i~~--Pd~~~R~~ 210 (321)
.++.+...+....+|++.+|+ +. ...++.||+|||+++.||++|+||||||+.|++ |+.++|.+
T Consensus 233 ~~~~~~~~~~~~~l~~ll~~ld~---------~~---~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~ 300 (364)
T TIGR01242 233 DSGTSGDREVQRTLMQLLAELDG---------FD---PRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLE 300 (364)
T ss_pred cCCCCccHHHHHHHHHHHHHhhC---------CC---CCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHH
Confidence 222222223333445555552 11 135799999999999999999999999998875 99999999
Q ss_pred HHHHHhhcCCC----CHHHHHHhhhCCCCCcchhhHHHHHhHhHHHHHHHHHh
Q 020787 211 IVHRMYEKDGI----TKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDD 259 (321)
Q Consensus 211 Il~~~~~~~~l----~~~dl~~L~d~f~gq~idf~gAlra~~~d~~~~~~i~~ 259 (321)
|++.++++..+ +..++.+++++ |.||....++.++...++.+
T Consensus 301 Il~~~~~~~~l~~~~~~~~la~~t~g-------~sg~dl~~l~~~A~~~a~~~ 346 (364)
T TIGR01242 301 ILKIHTRKMKLAEDVDLEAIAKMTEG-------ASGADLKAICTEAGMFAIRE 346 (364)
T ss_pred HHHHHHhcCCCCccCCHHHHHHHcCC-------CCHHHHHHHHHHHHHHHHHh
Confidence 99998877654 44555555554 45555566677666555544
No 34
>CHL00176 ftsH cell division protein; Validated
Probab=99.97 E-value=4.4e-31 Score=273.46 Aligned_cols=180 Identities=18% Similarity=0.246 Sum_probs=144.5
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeeccccccccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeecccccCCCCC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG 134 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~~r~~ 134 (321)
.++||||||||||++|+++|++++++|+.++++++.+.+.|.+.+.+|++|+.|+.. +||||||||||+++.+++
T Consensus 218 gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~~g~~~~~vr~lF~~A~~~-----~P~ILfIDEID~l~~~r~ 292 (638)
T CHL00176 218 GVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMFVGVGAARVRDLFKKAKEN-----SPCIVFIDEIDAVGRQRG 292 (638)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHhhhhhHHHHHHHHHHHhcC-----CCcEEEEecchhhhhccc
Confidence 689999999999999999999999999999999999999999999999999999844 899999999999987665
Q ss_pred -CCcc-chhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccccCCCCCCCcceec--CCCHHHHHH
Q 020787 135 -NTQM-TVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYW--QPNLEDILN 210 (321)
Q Consensus 135 -~t~~-~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpALlRpGRfDr~i~--~Pd~~~R~~ 210 (321)
+.+. ....+.+..+|++.+|+. .. ..+|.||+|||+|+.|||||+||||||+.+. .|+.++|.+
T Consensus 293 ~~~~~~~~e~~~~L~~LL~~~dg~---------~~---~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~ 360 (638)
T CHL00176 293 AGIGGGNDEREQTLNQLLTEMDGF---------KG---NKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLD 360 (638)
T ss_pred CCCCCCcHHHHHHHHHHHhhhccc---------cC---CCCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHH
Confidence 2221 122234556777777742 11 4579999999999999999999999999876 499999999
Q ss_pred HHHHHhhcCCCC-HHHHHHhhhCCCCCcchhhHHHHHhHhHHHHHH
Q 020787 211 IVHRMYEKDGIT-KDEVGSIVKTFPNQALDFYGALRSRTYDRSISK 255 (321)
Q Consensus 211 Il~~~~~~~~l~-~~dl~~L~d~f~gq~idf~gAlra~~~d~~~~~ 255 (321)
||+.+++...+. ..++..++...+| |.||..+.++.+++..
T Consensus 361 IL~~~l~~~~~~~d~~l~~lA~~t~G----~sgaDL~~lvneAal~ 402 (638)
T CHL00176 361 ILKVHARNKKLSPDVSLELIARRTPG----FSGADLANLLNEAAIL 402 (638)
T ss_pred HHHHHHhhcccchhHHHHHHHhcCCC----CCHHHHHHHHHHHHHH
Confidence 999999876544 4567777765444 5555555555555443
No 35
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.97 E-value=2.2e-31 Score=275.41 Aligned_cols=183 Identities=16% Similarity=0.193 Sum_probs=147.1
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeeccccccccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeecccccCCCCC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG 134 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~~r~~ 134 (321)
.++|+||||||||++|+++|++++++|+.++++++.+.|.|++++.+|++|..|++. +||||||||||+++++++
T Consensus 187 gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~~g~~~~~~~~~f~~a~~~-----~P~IifIDEiD~l~~~r~ 261 (644)
T PRK10733 187 GVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKA-----APCIIFIDEIDAVGRQRG 261 (644)
T ss_pred cEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhhhcccHHHHHHHHHHHHhc-----CCcEEEehhHhhhhhccC
Confidence 489999999999999999999999999999999999999999999999999999754 899999999999887765
Q ss_pred C-C-ccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccccCCCCCCCcceecC--CCHHHHHH
Q 020787 135 N-T-QMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQ--PNLEDILN 210 (321)
Q Consensus 135 ~-t-~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpALlRpGRfDr~i~~--Pd~~~R~~ 210 (321)
. . +.......+..+|++.||+. .. ..+|.||+|||+|+.|||||+||||||+++.+ |+.++|.+
T Consensus 262 ~~~~g~~~~~~~~ln~lL~~mdg~---------~~---~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~ 329 (644)
T PRK10733 262 AGLGGGHDEREQTLNQMLVEMDGF---------EG---NEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQ 329 (644)
T ss_pred CCCCCCchHHHHHHHHHHHhhhcc---------cC---CCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHH
Confidence 2 2 21222234555677777842 22 45799999999999999999999999998875 99999999
Q ss_pred HHHHHhhcCCCC-HHHHHHhhhCCCCCcchhhHHHHHhHhHHHHHHHHH
Q 020787 211 IVHRMYEKDGIT-KDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWID 258 (321)
Q Consensus 211 Il~~~~~~~~l~-~~dl~~L~d~f~gq~idf~gAlra~~~d~~~~~~i~ 258 (321)
|++.++++.++. ..++..++...+ .|.||..++++.++....+.
T Consensus 330 Il~~~~~~~~l~~~~d~~~la~~t~----G~sgadl~~l~~eAa~~a~r 374 (644)
T PRK10733 330 ILKVHMRRVPLAPDIDAAIIARGTP----GFSGADLANLVNEAALFAAR 374 (644)
T ss_pred HHHHHhhcCCCCCcCCHHHHHhhCC----CCCHHHHHHHHHHHHHHHHH
Confidence 999999887654 345555654333 35666666777666655554
No 36
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2.1e-30 Score=257.46 Aligned_cols=229 Identities=18% Similarity=0.247 Sum_probs=165.3
Q ss_pred ccccchhhhh------HhccccCCCCcHHHHHHHHHHHcCCceEEeeccccccccCCCcHHHHHHHHHHHHhhhhhcCCc
Q 020787 45 DYYIAPVFMA------SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKM 118 (321)
Q Consensus 45 ~~~~~p~f~~------iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~~gaP 118 (321)
++..|..|+. .|+|+||||+|||+|++|||.|+++.|+.+|+++|.+||+||+|++||.+|.-|+.. +|
T Consensus 172 p~lr~d~F~glr~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLtsK~~Ge~eK~vralf~vAr~~-----qP 246 (428)
T KOG0740|consen 172 PLLRPDLFLGLREPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLTSKYVGESEKLVRALFKVARSL-----QP 246 (428)
T ss_pred cccchHhhhccccccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhhhhccChHHHHHHHHHHHHHhc-----CC
Confidence 4455666665 899999999999999999999999999999999999999999999999999999855 99
Q ss_pred eEEEeecccccCC-CCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccccCCCCCCCc
Q 020787 119 SCLMINDIDAGLG-RFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRME 197 (321)
Q Consensus 119 cILFIDEIDAg~~-r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpALlRpGRfD 197 (321)
+||||||||.... |.++.. .. ++++..+.+...++.+ .....+|.||+|||+|+++|-|++| ||=
T Consensus 247 svifidEidslls~Rs~~e~-e~-srr~ktefLiq~~~~~----------s~~~drvlvigaTN~P~e~Dea~~R--rf~ 312 (428)
T KOG0740|consen 247 SVIFIDEIDSLLSKRSDNEH-ES-SRRLKTEFLLQFDGKN----------SAPDDRVLVIGATNRPWELDEAARR--RFV 312 (428)
T ss_pred eEEEechhHHHHhhcCCccc-cc-chhhhhHHHhhhcccc----------CCCCCeEEEEecCCCchHHHHHHHH--Hhh
Confidence 9999999999764 533333 22 3444444444444321 1114599999999999999999999 999
Q ss_pred ceecC--CCHHHHHHHHHHHhhcCC--CCH---HHHHHhhhCCCCCcchhhHHHHHhHhHHHHHHHHHhccCcccc----
Q 020787 198 KFYWQ--PNLEDILNIVHRMYEKDG--ITK---DEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENL---- 266 (321)
Q Consensus 198 r~i~~--Pd~~~R~~Il~~~~~~~~--l~~---~dl~~L~d~f~gq~idf~gAlra~~~d~~~~~~i~~~~g~~~~---- 266 (321)
+.+++ |+.+.|..|+..++++.+ ++. +.+.+++++|+|.+|+- +|.++.-.=+...++..++
T Consensus 313 kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~-------l~kea~~~p~r~~~~~~~~~~~~ 385 (428)
T KOG0740|consen 313 KRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITA-------LCKEAAMGPLRELGGTTDLEFID 385 (428)
T ss_pred ceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHH-------HHHHhhcCchhhcccchhhhhcc
Confidence 98886 899999999998888763 443 55666667777766643 3333332223333221111
Q ss_pred --cchhhcccCCCCCCcccCCcCCHHHHHHHHHHH
Q 020787 267 --GNKLLKRRKDKELPVFTPPEKTVEALLESGYSL 299 (321)
Q Consensus 267 --~~~lv~~~~~~~~~~~~~~~~s~~~l~~~g~~l 299 (321)
..+-+.-.+++....+.+|..|++.|-.|.+.-
T Consensus 386 ~~~~r~i~~~df~~a~~~i~~~~s~~~l~~~~~~~ 420 (428)
T KOG0740|consen 386 ADKIRPITYPDFKNAFKNIKPSVSLEGLEKYEKWD 420 (428)
T ss_pred hhccCCCCcchHHHHHHhhccccCccccchhHHHh
Confidence 122223333334556678888888887776553
No 37
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.96 E-value=1.6e-29 Score=203.43 Aligned_cols=131 Identities=26% Similarity=0.383 Sum_probs=113.8
Q ss_pred hccccCCCCcHHHHHHHHHHHcCCceEEeeccccccccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeecccccCCCCCC
Q 020787 56 LCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGN 135 (321)
Q Consensus 56 LgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~~r~~~ 135 (321)
++||||||||||++|+++|+.++.+++.++++++.+.+.+++++.++++|.+|.+.. +||||||||+|+..+...
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~----~~~vl~iDe~d~l~~~~~- 75 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSA----KPCVLFIDEIDKLFPKSQ- 75 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTS----TSEEEEEETGGGTSHHCS-
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccc----cceeeeeccchhcccccc-
Confidence 579999999999999999999999999999999999999999999999999997651 499999999999987663
Q ss_pred CccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccccCCCCCCCcceecCC
Q 020787 136 TQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQP 203 (321)
Q Consensus 136 t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpALlRpGRfDr~i~~P 203 (321)
.+.....+.+..+|++.+++.. ...+++.||+|||+++.|||+|+| ||||+.+++|
T Consensus 76 ~~~~~~~~~~~~~L~~~l~~~~-----------~~~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~ 131 (132)
T PF00004_consen 76 PSSSSFEQRLLNQLLSLLDNPS-----------SKNSRVIVIATTNSPDKIDPALLR-SRFDRRIEFP 131 (132)
T ss_dssp TSSSHHHHHHHHHHHHHHHTTT-----------TTSSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-
T ss_pred cccccccccccceeeecccccc-----------cccccceeEEeeCChhhCCHhHHh-CCCcEEEEcC
Confidence 3334456778889999999532 113579999999999999999999 9999999876
No 38
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.96 E-value=1.4e-28 Score=256.66 Aligned_cols=182 Identities=19% Similarity=0.256 Sum_probs=144.7
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeeccccccccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeecccccCCCCC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG 134 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~~r~~ 134 (321)
.++||||||||||++|+++|++++.+++.++++++.++|.|++++.++++|+.|... +||||||||||++++.++
T Consensus 214 giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~~~g~~~~~l~~lf~~a~~~-----~p~il~iDEid~l~~~r~ 288 (733)
T TIGR01243 214 GVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSKYYGESEERLREIFKEAEEN-----APSIIFIDEIDAIAPKRE 288 (733)
T ss_pred eEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhcccccHHHHHHHHHHHHHHhc-----CCcEEEeehhhhhccccc
Confidence 678999999999999999999999999999999999999999999999999999754 899999999999998776
Q ss_pred CCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccccCCCCCCCcceec--CCCHHHHHHHH
Q 020787 135 NTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYW--QPNLEDILNIV 212 (321)
Q Consensus 135 ~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpALlRpGRfDr~i~--~Pd~~~R~~Il 212 (321)
...... .+.+..+|++++|+. .. ..++.||+|||+|+.|||+|+|+||||+.+. .|+.++|.+|+
T Consensus 289 ~~~~~~-~~~~~~~Ll~~ld~l---------~~---~~~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il 355 (733)
T TIGR01243 289 EVTGEV-EKRVVAQLLTLMDGL---------KG---RGRVIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEIL 355 (733)
T ss_pred CCcchH-HHHHHHHHHHHhhcc---------cc---CCCEEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHH
Confidence 433333 356778899999842 11 3478899999999999999999999999776 49999999999
Q ss_pred HHHhhcCCCC-HHHHHHhhhCCCCCcchhhHHHHHhHhHHHHHHHHH
Q 020787 213 HRMYEKDGIT-KDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWID 258 (321)
Q Consensus 213 ~~~~~~~~l~-~~dl~~L~d~f~gq~idf~gAlra~~~d~~~~~~i~ 258 (321)
+.+++...+. ..++..++..++| |.||..+.++.++....+.
T Consensus 356 ~~~~~~~~l~~d~~l~~la~~t~G----~~gadl~~l~~~a~~~al~ 398 (733)
T TIGR01243 356 KVHTRNMPLAEDVDLDKLAEVTHG----FVGADLAALAKEAAMAALR 398 (733)
T ss_pred HHHhcCCCCccccCHHHHHHhCCC----CCHHHHHHHHHHHHHHHHH
Confidence 9888877653 2334444433322 3445555555555554444
No 39
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=5e-21 Score=185.84 Aligned_cols=149 Identities=20% Similarity=0.360 Sum_probs=123.6
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCC---------ceEEeeccccccccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeec
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGI---------EPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMIND 125 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~---------~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDE 125 (321)
+++||||||||||+||+|+|.++.+ .+|.+++.+|+|||.+||.|+|..+|..-.++++.++..-++.|||
T Consensus 179 liLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDE 258 (423)
T KOG0744|consen 179 LILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDE 258 (423)
T ss_pred EEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHH
Confidence 8899999999999999999999987 5788999999999999999999999999999999889999999999
Q ss_pred ccccCC-CCC-CCccc-hhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccccCCCCCCCcceec-
Q 020787 126 IDAGLG-RFG-NTQMT-VNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYW- 201 (321)
Q Consensus 126 IDAg~~-r~~-~t~~~-v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpALlRpGRfDr~i~- 201 (321)
+.+++. |.. .++.. ...=+|+.+||+.+| ++ ...++|.|++|.|=-++||-|+.- |-|-..|
T Consensus 259 VESLa~aR~s~~S~~EpsDaIRvVNalLTQlD-----rl-------K~~~NvliL~TSNl~~siD~AfVD--RADi~~yV 324 (423)
T KOG0744|consen 259 VESLAAARTSASSRNEPSDAIRVVNALLTQLD-----RL-------KRYPNVLILATSNLTDSIDVAFVD--RADIVFYV 324 (423)
T ss_pred HHHHHHHHHhhhcCCCCchHHHHHHHHHHHHH-----Hh-------ccCCCEEEEeccchHHHHHHHhhh--Hhhheeec
Confidence 999764 322 11111 112356677888888 22 235789999999999999999987 8886555
Q ss_pred -CCCHHHHHHHHHHHhh
Q 020787 202 -QPNLEDILNIVHRMYE 217 (321)
Q Consensus 202 -~Pd~~~R~~Il~~~~~ 217 (321)
.|+..+|.+|++.+..
T Consensus 325 G~Pt~~ai~~Ilkscie 341 (423)
T KOG0744|consen 325 GPPTAEAIYEILKSCIE 341 (423)
T ss_pred CCccHHHHHHHHHHHHH
Confidence 4999999999997754
No 40
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=1.1e-19 Score=181.37 Aligned_cols=165 Identities=18% Similarity=0.283 Sum_probs=115.5
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeeccccccccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeecccccCC---
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLG--- 131 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~~--- 131 (321)
..|||||||||||+++-|+|+.++-.+.-+.-+++-. .++ +|.+...+. .-+||.|.|||+.+-
T Consensus 237 GYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~----n~d--Lr~LL~~t~-------~kSIivIEDIDcs~~l~~ 303 (457)
T KOG0743|consen 237 GYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKL----DSD--LRHLLLATP-------NKSILLIEDIDCSFDLRE 303 (457)
T ss_pred cceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccC----cHH--HHHHHHhCC-------CCcEEEEeeccccccccc
Confidence 8999999999999999999999999999888887764 445 787776664 459999999999642
Q ss_pred CCC-CCccch--hhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccccCCCCCCCcceecCC--CHH
Q 020787 132 RFG-NTQMTV--NNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQP--NLE 206 (321)
Q Consensus 132 r~~-~t~~~v--~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpALlRpGRfDr~i~~P--d~~ 206 (321)
|+. ...... .++....-|||.+|| .|.... .--.||+|||-++.|||||+||||||.+|+.+ +.+
T Consensus 304 ~~~~~~~~~~~~~~~VTlSGLLNfiDG--------lwSscg--~ERIivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~ 373 (457)
T KOG0743|consen 304 RRKKKKENFEGDLSRVTLSGLLNFLDG--------LWSSCG--DERIIVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFE 373 (457)
T ss_pred ccccccccccCCcceeehHHhhhhhcc--------ccccCC--CceEEEEecCChhhcCHhhcCCCcceeEEEcCCCCHH
Confidence 222 111111 122344568888885 466542 33458899999999999999999999999975 444
Q ss_pred HHHHHHHHHhhcCC--CCHHHHHHhhhCCCCCcchhhH
Q 020787 207 DILNIVHRMYEKDG--ITKDEVGSIVKTFPNQALDFYG 242 (321)
Q Consensus 207 ~R~~Il~~~~~~~~--l~~~dl~~L~d~f~gq~idf~g 242 (321)
+=..+++.++.-.. .=..++++++++..=.|-+--+
T Consensus 374 ~fK~La~nYL~~~~~h~L~~eie~l~~~~~~tPA~V~e 411 (457)
T KOG0743|consen 374 AFKTLASNYLGIEEDHRLFDEIERLIEETEVTPAQVAE 411 (457)
T ss_pred HHHHHHHHhcCCCCCcchhHHHHHHhhcCccCHHHHHH
Confidence 44444455554432 2247777777755433434433
No 41
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.80 E-value=1.3e-19 Score=167.27 Aligned_cols=159 Identities=16% Similarity=0.205 Sum_probs=115.5
Q ss_pred CccccchhhhhHhccccCCCCcHHHHHHHHHHHc---C----CceEEeeccccccccCCCcHHHHHHHHHHHHhhhhhcC
Q 020787 44 GDYYIAPVFMASLCIWGGKGQGKSFQTELIFQAM---G----IEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQG 116 (321)
Q Consensus 44 ~~~~~~p~f~~iLgL~GPPGcGKTllaravA~e~---g----~~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~~g 116 (321)
.|.-.+|.. .-++||||||||||++|+++|+++ + .+++.++++++.++|+|+.++.++++|+.|.
T Consensus 34 ~g~~~~~~~-~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~l~~~~~g~~~~~~~~~~~~a~------- 105 (261)
T TIGR02881 34 EGLKTSKQV-LHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERADLVGEYIGHTAQKTREVIKKAL------- 105 (261)
T ss_pred cCCCCCCCc-ceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHHhhhhhccchHHHHHHHHHhcc-------
Confidence 344445543 457889999999999999999874 3 3788999999999999999999999998773
Q ss_pred CceEEEeecccccCCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeC-----CCCCccccCC
Q 020787 117 KMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGN-----DFSTIYAPLI 191 (321)
Q Consensus 117 aPcILFIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTN-----rp~~LDpALl 191 (321)
++||||||+|.+... +.. . .++....+|+..|++. ..++.+|+|++ ....++|+|+
T Consensus 106 -~~VL~IDE~~~L~~~-~~~--~-~~~~~i~~Ll~~~e~~--------------~~~~~vila~~~~~~~~~~~~~p~L~ 166 (261)
T TIGR02881 106 -GGVLFIDEAYSLARG-GEK--D-FGKEAIDTLVKGMEDN--------------RNEFVLILAGYSDEMDYFLSLNPGLR 166 (261)
T ss_pred -CCEEEEechhhhccC-Ccc--c-hHHHHHHHHHHHHhcc--------------CCCEEEEecCCcchhHHHHhcChHHH
Confidence 689999999998631 111 1 1234556788877731 23455555543 2234788998
Q ss_pred CCCCCcceecC--CCHHHHHHHHHHHhhcCC--CCHHHHHHhhh
Q 020787 192 RDGRMEKFYWQ--PNLEDILNIVHRMYEKDG--ITKDEVGSIVK 231 (321)
Q Consensus 192 RpGRfDr~i~~--Pd~~~R~~Il~~~~~~~~--l~~~dl~~L~d 231 (321)
+ ||+..+.. ++.+++.+|++.+++..+ ++.+.+..|.+
T Consensus 167 s--Rf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l~~ 208 (261)
T TIGR02881 167 S--RFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKLRE 208 (261)
T ss_pred h--ccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHHHH
Confidence 7 99877765 488999999998888664 55555555544
No 42
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=3.6e-19 Score=177.54 Aligned_cols=181 Identities=19% Similarity=0.207 Sum_probs=143.3
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeeccccccccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeecccccCCCCC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG 134 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~~r~~ 134 (321)
.+++|||||||||++++++|.+ ++.+..++++++.++|.|++++.+|..|..|... +|+++|+||+|+.++++.
T Consensus 20 ~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~-----~~~ii~~d~~~~~~~~~~ 93 (494)
T COG0464 20 GVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKL-----APSIIFIDEIDALAPKRS 93 (494)
T ss_pred CceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHh-----CCCeEeechhhhcccCcc
Confidence 6789999999999999999999 8888999999999999999999999999999866 799999999999998887
Q ss_pred CCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccccCCCCCCCcceec--CCCHHHHHHHH
Q 020787 135 NTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYW--QPNLEDILNIV 212 (321)
Q Consensus 135 ~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpALlRpGRfDr~i~--~Pd~~~R~~Il 212 (321)
..+..+ .+.+.++|++.+|+. . ... |.++++||++..+|++++||||||+.+. .|+...|.+|+
T Consensus 94 ~~~~~~-~~~v~~~l~~~~d~~---------~---~~~-v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ei~ 159 (494)
T COG0464 94 SDQGEV-ERRVVAQLLALMDGL---------K---RGQ-VIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDEAGRLEIL 159 (494)
T ss_pred ccccch-hhHHHHHHHHhcccc---------c---CCc-eEEEeecCCccccChhHhCccccceeeecCCCCHHHHHHHH
Confidence 533333 456788999999942 1 235 8888899999999999999999999776 49999999999
Q ss_pred HHHhhcCCCC-HHHHHHhhhCCCCCcchhhHHHHHhHhHHHHHHHHHh
Q 020787 213 HRMYEKDGIT-KDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDD 259 (321)
Q Consensus 213 ~~~~~~~~l~-~~dl~~L~d~f~gq~idf~gAlra~~~d~~~~~~i~~ 259 (321)
+.++...... ..++..++. ....|.+|....++.++...++..
T Consensus 160 ~~~~~~~~~~~~~~~~~~a~----~~~~~~~~~~~~l~~~~~~~~~~r 203 (494)
T COG0464 160 QIHTRLMFLGPPGTGKTLAA----RTVGKSGADLGALAKEAALRELRR 203 (494)
T ss_pred HHHHhcCCCcccccHHHHHH----hcCCccHHHHHHHHHHHHHHHHHh
Confidence 9888777544 233444442 223344455555555544444444
No 43
>CHL00181 cbbX CbbX; Provisional
Probab=99.80 E-value=2.6e-19 Score=169.52 Aligned_cols=150 Identities=15% Similarity=0.190 Sum_probs=114.8
Q ss_pred HhccccCCCCcHHHHHHHHHHHcC-------CceEEeeccccccccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeeccc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMG-------IEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDID 127 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g-------~~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDEID 127 (321)
.++|+||||||||++|+++|+.+. .+++.+++++|+++|+|++++.++++|++|. ++||||||+|
T Consensus 61 ~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~l~~a~--------ggVLfIDE~~ 132 (287)
T CHL00181 61 HMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDLVGQYIGHTAPKTKEVLKKAM--------GGVLFIDEAY 132 (287)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHHHHHHhccchHHHHHHHHHcc--------CCEEEEEccc
Confidence 478999999999999999998752 2589999999999999999999999998873 5899999999
Q ss_pred ccCCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCC-----CccccCCCCCCCcceecC
Q 020787 128 AGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFS-----TIYAPLIRDGRMEKFYWQ 202 (321)
Q Consensus 128 Ag~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~-----~LDpALlRpGRfDr~i~~ 202 (321)
.+.+..+... ..+.+..+|+.+|++. ..++.||+||+... .++|+|+| ||+..+..
T Consensus 133 ~l~~~~~~~~---~~~e~~~~L~~~me~~--------------~~~~~vI~ag~~~~~~~~~~~np~L~s--R~~~~i~F 193 (287)
T CHL00181 133 YLYKPDNERD---YGSEAIEILLQVMENQ--------------RDDLVVIFAGYKDRMDKFYESNPGLSS--RIANHVDF 193 (287)
T ss_pred hhccCCCccc---hHHHHHHHHHHHHhcC--------------CCCEEEEEeCCcHHHHHHHhcCHHHHH--hCCceEEc
Confidence 9864322211 1345677898888731 24677888876322 34699998 99987765
Q ss_pred --CCHHHHHHHHHHHhhcCC--CCHHHHHHhhh
Q 020787 203 --PNLEDILNIVHRMYEKDG--ITKDEVGSIVK 231 (321)
Q Consensus 203 --Pd~~~R~~Il~~~~~~~~--l~~~dl~~L~d 231 (321)
++.+++..|++.+++... ++.+....|.+
T Consensus 194 ~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~ 226 (287)
T CHL00181 194 PDYTPEELLQIAKIMLEEQQYQLTPEAEKALLD 226 (287)
T ss_pred CCcCHHHHHHHHHHHHHHhcCCCChhHHHHHHH
Confidence 689999999999988654 56555554444
No 44
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.79 E-value=2.7e-19 Score=168.71 Aligned_cols=150 Identities=14% Similarity=0.168 Sum_probs=115.8
Q ss_pred HhccccCCCCcHHHHHHHHHHHcC-------CceEEeeccccccccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeeccc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMG-------IEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDID 127 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g-------~~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDEID 127 (321)
.++|+||||||||++|+++|..+. -+|+.+++++++++|.|+++..++++|++| .+++|||||||
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~~~~~g~~~~~~~~~~~~a--------~~gvL~iDEi~ 131 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEILKRA--------MGGVLFIDEAY 131 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHHhHhhcccchHHHHHHHHHc--------cCcEEEEechh
Confidence 478999999999999999998763 279999999999999999999999999887 36999999999
Q ss_pred ccCCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCC--CCC---ccccCCCCCCCcceecC
Q 020787 128 AGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGND--FST---IYAPLIRDGRMEKFYWQ 202 (321)
Q Consensus 128 Ag~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNr--p~~---LDpALlRpGRfDr~i~~ 202 (321)
.+.++++... ..+.++.+|+++|++. ..++.||+||+. ++. ++|+|.+ ||+..|.+
T Consensus 132 ~L~~~~~~~~---~~~~~~~~Ll~~le~~--------------~~~~~vI~a~~~~~~~~~~~~np~L~s--R~~~~i~f 192 (284)
T TIGR02880 132 YLYRPDNERD---YGQEAIEILLQVMENQ--------------RDDLVVILAGYKDRMDSFFESNPGFSS--RVAHHVDF 192 (284)
T ss_pred hhccCCCccc---hHHHHHHHHHHHHhcC--------------CCCEEEEEeCCcHHHHHHHhhCHHHHh--hCCcEEEe
Confidence 9865433211 1345677888888731 246778887653 343 3799999 99987765
Q ss_pred --CCHHHHHHHHHHHhhcCC--CCHHHHHHhhh
Q 020787 203 --PNLEDILNIVHRMYEKDG--ITKDEVGSIVK 231 (321)
Q Consensus 203 --Pd~~~R~~Il~~~~~~~~--l~~~dl~~L~d 231 (321)
++.+++..|++.+++... ++.+.+..|.+
T Consensus 193 p~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~ 225 (284)
T TIGR02880 193 PDYSEAELLVIAGLMLKEQQYRFSAEAEEAFAD 225 (284)
T ss_pred CCcCHHHHHHHHHHHHHHhccccCHHHHHHHHH
Confidence 588999999999888754 56555555543
No 45
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.77 E-value=1.1e-18 Score=184.13 Aligned_cols=162 Identities=23% Similarity=0.297 Sum_probs=118.3
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeeccccc---------cccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeec
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELE---------SERAGEPGKLIRERYRTASQVVQNQGKMSCLMIND 125 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~---------s~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDE 125 (321)
+++||||||||||++|+++|++++.+|+.++.+.+. +.|+|.++..+++.|..|... .| ||||||
T Consensus 349 ~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~~~~~g~~~g~i~~~l~~~~~~-----~~-villDE 422 (775)
T TIGR00763 349 ILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHRRTYVGAMPGRIIQGLKKAKTK-----NP-LFLLDE 422 (775)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCCCceeCCCCchHHHHHHHhCcC-----CC-EEEEec
Confidence 799999999999999999999999999999876543 468999998999999887532 45 789999
Q ss_pred ccccCCCCCCCccchhhHHHHHHHHhhcCCCCccc-cCccccc--cCCCCCccEEEeeCCCCCccccCCCCCCCcceec-
Q 020787 126 IDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVS-IGQDWRE--SDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYW- 201 (321)
Q Consensus 126 IDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~vq-l~g~~~~--~~~~~~V~VIaaTNrp~~LDpALlRpGRfDr~i~- 201 (321)
||...+.+.+ + ....|++++|...+-. ++. |.. .+ .+++.+|+|||+++.|+|||++ ||+...+
T Consensus 423 idk~~~~~~~---~-----~~~aLl~~ld~~~~~~f~d~-~~~~~~d-~s~v~~I~TtN~~~~i~~~L~~--R~~vi~~~ 490 (775)
T TIGR00763 423 IDKIGSSFRG---D-----PASALLEVLDPEQNNAFSDH-YLDVPFD-LSKVIFIATANSIDTIPRPLLD--RMEVIELS 490 (775)
T ss_pred hhhcCCccCC---C-----HHHHHHHhcCHHhcCccccc-cCCceec-cCCEEEEEecCCchhCCHHHhC--CeeEEecC
Confidence 9998753221 1 2346788887311100 110 100 11 3578999999999999999998 9974333
Q ss_pred CCCHHHHHHHHHHHh-----hc-------CCCCHHHHHHhhhCCC
Q 020787 202 QPNLEDILNIVHRMY-----EK-------DGITKDEVGSIVKTFP 234 (321)
Q Consensus 202 ~Pd~~~R~~Il~~~~-----~~-------~~l~~~dl~~L~d~f~ 234 (321)
.|+.+++.+|++.++ +. ..++.+.+..|+..+.
T Consensus 491 ~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~ 535 (775)
T TIGR00763 491 GYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIKYYT 535 (775)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHHhcC
Confidence 278999999998664 11 1356788888887654
No 46
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.77 E-value=1.2e-18 Score=182.63 Aligned_cols=161 Identities=17% Similarity=0.206 Sum_probs=119.8
Q ss_pred HhccccCCCCcHHHHHHHHHHHc----------CCceEEeeccccc--cccCCCcHHHHHHHHHHHHhhhhhcCCceEEE
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM----------GIEPVIMSAGELE--SERAGEPGKLIRERYRTASQVVQNQGKMSCLM 122 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~----------g~~~i~vs~~eL~--s~~~GEser~IR~~F~~A~~~~~~~gaPcILF 122 (321)
-.+||||||||||++|+++|.++ +..++.++.+.++ .+|.|+.|+.++++|++|.+. .|+|||
T Consensus 205 n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a~~~~~g~~e~~l~~i~~~~~~~-----~~~ILf 279 (731)
T TIGR02639 205 NPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLLAGTKYRGDFEERLKAVVSEIEKE-----PNAILF 279 (731)
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHhhhccccchHHHHHHHHHHHHhcc-----CCeEEE
Confidence 46799999999999999999998 8889999999998 589999999999999999754 699999
Q ss_pred eecccccCCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCC-----CCccccCCCCCCCc
Q 020787 123 INDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDF-----STIYAPLIRDGRME 197 (321)
Q Consensus 123 IDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp-----~~LDpALlRpGRfD 197 (321)
|||||.+++...+.+++. .+...|...+. ...+.+|+|||.. -.+|+||.| ||.
T Consensus 280 iDEih~l~~~g~~~~~~~---~~~~~L~~~l~----------------~g~i~~IgaTt~~e~~~~~~~d~al~r--Rf~ 338 (731)
T TIGR02639 280 IDEIHTIVGAGATSGGSM---DASNLLKPALS----------------SGKLRCIGSTTYEEYKNHFEKDRALSR--RFQ 338 (731)
T ss_pred EecHHHHhccCCCCCccH---HHHHHHHHHHh----------------CCCeEEEEecCHHHHHHHhhhhHHHHH--hCc
Confidence 999999876433222111 12223333222 2468899999863 368999999 998
Q ss_pred cee-cCCCHHHHHHHHHHHhhc------CCCCHHHHHHhhh---------CCCCCcchhh
Q 020787 198 KFY-WQPNLEDILNIVHRMYEK------DGITKDEVGSIVK---------TFPNQALDFY 241 (321)
Q Consensus 198 r~i-~~Pd~~~R~~Il~~~~~~------~~l~~~dl~~L~d---------~f~gq~idf~ 241 (321)
... ..|+.+++.+||+.+... ..++.+.+..+++ .+|+-.||+.
T Consensus 339 ~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~~r~~P~kai~ll 398 (731)
T TIGR02639 339 KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYINDRFLPDKAIDVI 398 (731)
T ss_pred eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhcccccccCCHHHHHHH
Confidence 632 359999999999865432 2467766665553 3366666664
No 47
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.74 E-value=8.2e-18 Score=177.90 Aligned_cols=160 Identities=20% Similarity=0.230 Sum_probs=116.7
Q ss_pred hccccCCCCcHHHHHHHHHHHc----------CCceEEeeccccc--cccCCCcHHHHHHHHHHHHhhhhhcCCceEEEe
Q 020787 56 LCIWGGKGQGKSFQTELIFQAM----------GIEPVIMSAGELE--SERAGEPGKLIRERYRTASQVVQNQGKMSCLMI 123 (321)
Q Consensus 56 LgL~GPPGcGKTllaravA~e~----------g~~~i~vs~~eL~--s~~~GEser~IR~~F~~A~~~~~~~gaPcILFI 123 (321)
++|+||||||||.+|+++|... ++.++.++.+.++ .+|.|+.|+.++.+|+++.+. .++||||
T Consensus 210 ~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~~llaG~~~~Ge~e~rl~~l~~~l~~~-----~~~ILfI 284 (758)
T PRK11034 210 PLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQD-----TNSILFI 284 (758)
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHHHHhcccchhhhHHHHHHHHHHHHHhc-----CCCEEEe
Confidence 4789999999999999999874 7788888888888 578999999999999988743 7899999
Q ss_pred ecccccCCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCC-----CccccCCCCCCCcc
Q 020787 124 NDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFS-----TIYAPLIRDGRMEK 198 (321)
Q Consensus 124 DEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~-----~LDpALlRpGRfDr 198 (321)
||||.+++..+.++. ...+...|..++. ..++.||+|||.++ .+||||.| ||++
T Consensus 285 DEIh~L~g~g~~~~g---~~d~~nlLkp~L~----------------~g~i~vIgATt~~E~~~~~~~D~AL~r--RFq~ 343 (758)
T PRK11034 285 DEIHTIIGAGAASGG---QVDAANLIKPLLS----------------SGKIRVIGSTTYQEFSNIFEKDRALAR--RFQK 343 (758)
T ss_pred ccHHHHhccCCCCCc---HHHHHHHHHHHHh----------------CCCeEEEecCChHHHHHHhhccHHHHh--hCcE
Confidence 999998865432221 1223333333332 34799999999875 58999999 9986
Q ss_pred ee-cCCCHHHHHHHHHHHhhc------CCCCHHHHHHhh---h------CCCCCcchhh
Q 020787 199 FY-WQPNLEDILNIVHRMYEK------DGITKDEVGSIV---K------TFPNQALDFY 241 (321)
Q Consensus 199 ~i-~~Pd~~~R~~Il~~~~~~------~~l~~~dl~~L~---d------~f~gq~idf~ 241 (321)
.. ..|+.+++..||+.+... ..++++.+...+ + .+|+..+|+.
T Consensus 344 I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~lPdKaidll 402 (758)
T PRK11034 344 IDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVI 402 (758)
T ss_pred EEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCccChHHHHHHH
Confidence 33 359999999999876432 234555554433 3 3455566664
No 48
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.69 E-value=8.6e-17 Score=171.92 Aligned_cols=160 Identities=16% Similarity=0.170 Sum_probs=115.0
Q ss_pred HhccccCCCCcHHHHHHHHHHHc----------CCceEEeecccccc--ccCCCcHHHHHHHHHHHHhhhhhcCCceEEE
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM----------GIEPVIMSAGELES--ERAGEPGKLIRERYRTASQVVQNQGKMSCLM 122 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~----------g~~~i~vs~~eL~s--~~~GEser~IR~~F~~A~~~~~~~gaPcILF 122 (321)
-.+|+||||||||.+|+.+|..+ +..++.++.+.+.+ +|.||.|+.++++|+++.+ .+.++|||
T Consensus 210 n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag~~~~ge~e~~lk~ii~e~~~----~~~~~ILf 285 (852)
T TIGR03345 210 NPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGASVKGEFENRLKSVIDEVKA----SPQPIILF 285 (852)
T ss_pred ceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhcccccchHHHHHHHHHHHHHHh----cCCCeEEE
Confidence 34699999999999999999987 35688888888874 6999999999999999864 24799999
Q ss_pred eecccccCCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCC-----CccccCCCCCCCc
Q 020787 123 INDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFS-----TIYAPLIRDGRME 197 (321)
Q Consensus 123 IDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~-----~LDpALlRpGRfD 197 (321)
||||+.+++..+..+. +-+...|...+. ...+.+|+|||..+ .+||||.| ||.
T Consensus 286 IDEih~l~~~g~~~~~----~d~~n~Lkp~l~----------------~G~l~~IgaTT~~e~~~~~~~d~AL~r--Rf~ 343 (852)
T TIGR03345 286 IDEAHTLIGAGGQAGQ----GDAANLLKPALA----------------RGELRTIAATTWAEYKKYFEKDPALTR--RFQ 343 (852)
T ss_pred EeChHHhccCCCcccc----ccHHHHhhHHhh----------------CCCeEEEEecCHHHHhhhhhccHHHHH--hCe
Confidence 9999998865432111 112122322221 34688999988643 49999999 997
Q ss_pred cee-cCCCHHHHHHHHHHHhhc------CCCCHHHHHHhh---h------CCCCCcchh
Q 020787 198 KFY-WQPNLEDILNIVHRMYEK------DGITKDEVGSIV---K------TFPNQALDF 240 (321)
Q Consensus 198 r~i-~~Pd~~~R~~Il~~~~~~------~~l~~~dl~~L~---d------~f~gq~idf 240 (321)
... ..|+.+++..||+.+.+. ..++++.+..++ + .+|+..||+
T Consensus 344 ~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~~r~LPDKAIdl 402 (852)
T TIGR03345 344 VVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIPGRQLPDKAVSL 402 (852)
T ss_pred EEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccccccccCccHHHHH
Confidence 532 249999999998755432 235665555444 3 346666766
No 49
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.68 E-value=1.3e-16 Score=170.62 Aligned_cols=137 Identities=19% Similarity=0.233 Sum_probs=106.7
Q ss_pred HhccccCCCCcHHHHHHHHHHHc----------CCceEEeeccccc--cccCCCcHHHHHHHHHHHHhhhhhcCCceEEE
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM----------GIEPVIMSAGELE--SERAGEPGKLIRERYRTASQVVQNQGKMSCLM 122 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~----------g~~~i~vs~~eL~--s~~~GEser~IR~~F~~A~~~~~~~gaPcILF 122 (321)
.++|+||||||||++|+++|..+ +..++.++.+.++ .+|.|+.|+.++++|+++.+ .+.|+|||
T Consensus 201 n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~ag~~~~g~~e~~lk~~~~~~~~----~~~~~ILf 276 (857)
T PRK10865 201 NPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAK----QEGNVILF 276 (857)
T ss_pred ceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhhhccchhhhhHHHHHHHHHHHHH----cCCCeEEE
Confidence 56799999999999999999998 8899999999988 56999999999999998653 24799999
Q ss_pred eecccccCCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCC-----CccccCCCCCCCc
Q 020787 123 INDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFS-----TIYAPLIRDGRME 197 (321)
Q Consensus 123 IDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~-----~LDpALlRpGRfD 197 (321)
|||||.+++..++.+ ... ....|...+. ...+.+|+|||..+ .+|+||.| ||+
T Consensus 277 IDEih~l~~~~~~~~-~~d---~~~~lkp~l~----------------~g~l~~IgaTt~~e~r~~~~~d~al~r--Rf~ 334 (857)
T PRK10865 277 IDELHTMVGAGKADG-AMD---AGNMLKPALA----------------RGELHCVGATTLDEYRQYIEKDAALER--RFQ 334 (857)
T ss_pred EecHHHhccCCCCcc-chh---HHHHhcchhh----------------cCCCeEEEcCCCHHHHHHhhhcHHHHh--hCC
Confidence 999999876543222 111 1112221111 34789999999887 49999999 998
Q ss_pred cee-cCCCHHHHHHHHHHHhh
Q 020787 198 KFY-WQPNLEDILNIVHRMYE 217 (321)
Q Consensus 198 r~i-~~Pd~~~R~~Il~~~~~ 217 (321)
..+ ..|+.+++..||+.+..
T Consensus 335 ~i~v~eP~~~~~~~iL~~l~~ 355 (857)
T PRK10865 335 KVFVAEPSVEDTIAILRGLKE 355 (857)
T ss_pred EEEeCCCCHHHHHHHHHHHhh
Confidence 643 35999999999987754
No 50
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.65 E-value=4.9e-16 Score=165.85 Aligned_cols=161 Identities=18% Similarity=0.217 Sum_probs=116.8
Q ss_pred HhccccCCCCcHHHHHHHHHHHc----------CCceEEeeccccc--cccCCCcHHHHHHHHHHHHhhhhhcCCceEEE
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM----------GIEPVIMSAGELE--SERAGEPGKLIRERYRTASQVVQNQGKMSCLM 122 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~----------g~~~i~vs~~eL~--s~~~GEser~IR~~F~~A~~~~~~~gaPcILF 122 (321)
..+|+||||||||++|+++|..+ +..++.++.+.++ .+|.|+.|+.++.+|+++.+. +.|+|||
T Consensus 196 n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l~a~~~~~g~~e~~l~~~l~~~~~~----~~~~ILf 271 (852)
T TIGR03346 196 NPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGALIAGAKYRGEFEERLKAVLNEVTKS----EGQIILF 271 (852)
T ss_pred ceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHHhhcchhhhhHHHHHHHHHHHHHhc----CCCeEEE
Confidence 45689999999999999999986 7889999999887 579999999999999988642 3699999
Q ss_pred eecccccCCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCC-----CccccCCCCCCCc
Q 020787 123 INDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFS-----TIYAPLIRDGRME 197 (321)
Q Consensus 123 IDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~-----~LDpALlRpGRfD 197 (321)
|||||.+++.....+ . ..+...|...+. ...+.+|+|||..+ .+||||.| ||.
T Consensus 272 IDEih~l~~~g~~~~-~---~d~~~~Lk~~l~----------------~g~i~~IgaTt~~e~r~~~~~d~al~r--Rf~ 329 (852)
T TIGR03346 272 IDELHTLVGAGKAEG-A---MDAGNMLKPALA----------------RGELHCIGATTLDEYRKYIEKDAALER--RFQ 329 (852)
T ss_pred eccHHHhhcCCCCcc-h---hHHHHHhchhhh----------------cCceEEEEeCcHHHHHHHhhcCHHHHh--cCC
Confidence 999999875332111 1 112222222111 34789999999874 58999999 998
Q ss_pred cee-cCCCHHHHHHHHHHHhhcC------CCCHHHHHHhh---hC------CCCCcchhh
Q 020787 198 KFY-WQPNLEDILNIVHRMYEKD------GITKDEVGSIV---KT------FPNQALDFY 241 (321)
Q Consensus 198 r~i-~~Pd~~~R~~Il~~~~~~~------~l~~~dl~~L~---d~------f~gq~idf~ 241 (321)
..+ ..|+.+++..||+.+.... .++.+.+..++ .+ +|...||+.
T Consensus 330 ~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi~~r~lPdkAidll 389 (852)
T TIGR03346 330 PVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYITDRFLPDKAIDLI 389 (852)
T ss_pred EEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhccccccccCCchHHHHHH
Confidence 643 3599999999998764432 34555554444 33 466666663
No 51
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.63 E-value=1e-15 Score=162.76 Aligned_cols=159 Identities=16% Similarity=0.236 Sum_probs=115.5
Q ss_pred HhccccCCCCcHHHHHHHHHHHc----------CCceEEeeccccc--cccCCCcHHHHHHHHHHHHhhhhhcCCceEEE
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM----------GIEPVIMSAGELE--SERAGEPGKLIRERYRTASQVVQNQGKMSCLM 122 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~----------g~~~i~vs~~eL~--s~~~GEser~IR~~F~~A~~~~~~~gaPcILF 122 (321)
-.+|+||||||||.+|+++|.++ +..++.++.++++ ++|.||.|+.|+.+|++|.+. .++|||
T Consensus 202 n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~ag~~~~ge~e~rl~~i~~~~~~~-----~~~ILf 276 (821)
T CHL00095 202 NPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLLAGTKYRGEFEERLKRIFDEIQEN-----NNIILV 276 (821)
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHhccCCCccHHHHHHHHHHHHHHhc-----CCeEEE
Confidence 45799999999999999999987 4789999999998 579999999999999999643 799999
Q ss_pred eecccccCCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCC-----CccccCCCCCCCc
Q 020787 123 INDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFS-----TIYAPLIRDGRME 197 (321)
Q Consensus 123 IDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~-----~LDpALlRpGRfD 197 (321)
|||||.+++..+..+ ++ .+...|...+. ...+.+|+|||..+ ..||+|.| ||.
T Consensus 277 iDEih~l~~~g~~~g-~~---~~a~lLkp~l~----------------rg~l~~IgaTt~~ey~~~ie~D~aL~r--Rf~ 334 (821)
T CHL00095 277 IDEVHTLIGAGAAEG-AI---DAANILKPALA----------------RGELQCIGATTLDEYRKHIEKDPALER--RFQ 334 (821)
T ss_pred EecHHHHhcCCCCCC-cc---cHHHHhHHHHh----------------CCCcEEEEeCCHHHHHHHHhcCHHHHh--cce
Confidence 999999876543221 11 11112221111 34688999999765 58999999 998
Q ss_pred cee-cCCCHHHHHHHHHHHhh------cCCCCHHHHH---HhhhC------CCCCcchh
Q 020787 198 KFY-WQPNLEDILNIVHRMYE------KDGITKDEVG---SIVKT------FPNQALDF 240 (321)
Q Consensus 198 r~i-~~Pd~~~R~~Il~~~~~------~~~l~~~dl~---~L~d~------f~gq~idf 240 (321)
... ..|+.++...|++.+.. +..++.+.+. .|+++ +|+-.||+
T Consensus 335 ~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi~~r~lPdkaidl 393 (821)
T CHL00095 335 PVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIADRFLPDKAIDL 393 (821)
T ss_pred EEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCccccCchHHHHH
Confidence 743 34999999999975432 2235655554 44443 45656665
No 52
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.62 E-value=2.8e-15 Score=142.71 Aligned_cols=157 Identities=18% Similarity=0.189 Sum_probs=105.2
Q ss_pred hHhccccCCCCcHHHHHHHHHHHcCCceEEeeccccccccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeecccccCCCC
Q 020787 54 ASLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRF 133 (321)
Q Consensus 54 ~iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~~r~ 133 (321)
..++||||||||||++|+++|++++..+..++++.+.. ...+..++... +.++||||||||.+.+.
T Consensus 52 ~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~------~~~l~~~l~~l-------~~~~vl~IDEi~~l~~~- 117 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEK------PGDLAAILTNL-------EEGDVLFIDEIHRLSPV- 117 (328)
T ss_pred CcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccC------hHHHHHHHHhc-------ccCCEEEEecHhhcchH-
Confidence 36789999999999999999999999998888775542 22344444332 36899999999987531
Q ss_pred CCCccchhhHHHHHHHHhhcCCC-CccccCccccccC---CCCCccEEEeeCCCCCccccCCCCCCCcceec--CCCHHH
Q 020787 134 GNTQMTVNNQIVVGTLMNLSDNP-TRVSIGQDWRESD---ITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYW--QPNLED 207 (321)
Q Consensus 134 ~~t~~~v~~q~V~~tLl~llD~~-~~vql~g~~~~~~---~~~~V~VIaaTNrp~~LDpALlRpGRfDr~i~--~Pd~~~ 207 (321)
. +.. |.+.|++. ..+.++....... ..++..+|+|||++..++++|+. ||...+. .|+.++
T Consensus 118 ------~--~e~---l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~~~~~l~~~L~s--Rf~~~~~l~~~~~~e 184 (328)
T PRK00080 118 ------V--EEI---LYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTRAGLLTSPLRD--RFGIVQRLEFYTVEE 184 (328)
T ss_pred ------H--HHH---HHHHHHhcceeeeeccCccccceeecCCCceEEeecCCcccCCHHHHH--hcCeeeecCCCCHHH
Confidence 1 111 22222211 0111211111100 02346789999999999999876 8876554 489999
Q ss_pred HHHHHHHHhhcCC--CCHHHHHHhhhCCCCCc
Q 020787 208 ILNIVHRMYEKDG--ITKDEVGSIVKTFPNQA 237 (321)
Q Consensus 208 R~~Il~~~~~~~~--l~~~dl~~L~d~f~gq~ 237 (321)
+.+||+......+ ++.+.+..|+..+.|-+
T Consensus 185 ~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~p 216 (328)
T PRK00080 185 LEKIVKRSARILGVEIDEEGALEIARRSRGTP 216 (328)
T ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHHHcCCCc
Confidence 9999998777654 56777788887776644
No 53
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=1.3e-15 Score=152.17 Aligned_cols=140 Identities=16% Similarity=0.261 Sum_probs=104.5
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeeccccccccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeeccccc-CCCC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAG-LGRF 133 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg-~~r~ 133 (321)
-+++|||||||||+.||-+|.+.|...-.|.|+++-- .=-+.--.|.++|+-|... .+--+|||||.||. |.|.
T Consensus 386 NilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAP-lG~qaVTkiH~lFDWakkS----~rGLllFIDEADAFLceRn 460 (630)
T KOG0742|consen 386 NILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAP-LGAQAVTKIHKLFDWAKKS----RRGLLLFIDEADAFLCERN 460 (630)
T ss_pred heeeeCCCCCCchHHHHHHHhhcCCceehhcCCCccc-cchHHHHHHHHHHHHHhhc----ccceEEEehhhHHHHHHhc
Confidence 6789999999999999999999999999999999863 2224456799999998643 46789999999995 5553
Q ss_pred CCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccccCCCCCCCcceec--CCCHHHHHHH
Q 020787 134 GNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYW--QPNLEDILNI 211 (321)
Q Consensus 134 ~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpALlRpGRfDr~i~--~Pd~~~R~~I 211 (321)
.+.-+.....-+++.|. +.-+..+.+..+.|||||.+||.|.-= |+|..+. +|..++|..+
T Consensus 461 ktymSEaqRsaLNAlLf---------------RTGdqSrdivLvlAtNrpgdlDsAV~D--Ride~veFpLPGeEERfkl 523 (630)
T KOG0742|consen 461 KTYMSEAQRSALNALLF---------------RTGDQSRDIVLVLATNRPGDLDSAVND--RIDEVVEFPLPGEEERFKL 523 (630)
T ss_pred hhhhcHHHHHHHHHHHH---------------HhcccccceEEEeccCCccchhHHHHh--hhhheeecCCCChHHHHHH
Confidence 32111111223444442 122224566777799999999999876 9999775 5999999999
Q ss_pred HHHHh
Q 020787 212 VHRMY 216 (321)
Q Consensus 212 l~~~~ 216 (321)
|..++
T Consensus 524 l~lYl 528 (630)
T KOG0742|consen 524 LNLYL 528 (630)
T ss_pred HHHHH
Confidence 98654
No 54
>PRK04195 replication factor C large subunit; Provisional
Probab=99.57 E-value=3.5e-14 Score=142.46 Aligned_cols=150 Identities=17% Similarity=0.245 Sum_probs=109.2
Q ss_pred hHhccccCCCCcHHHHHHHHHHHcCCceEEeeccccccccCCCcHHHHHHHHHHHHhhhhhcC-CceEEEeecccccCCC
Q 020787 54 ASLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQG-KMSCLMINDIDAGLGR 132 (321)
Q Consensus 54 ~iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~~g-aPcILFIDEIDAg~~r 132 (321)
..++||||||||||++|+++|++++..++.+++++.-+ ...|+.+...+.......+ .+.||+|||+|.+.++
T Consensus 40 ~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~------~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~ 113 (482)
T PRK04195 40 KALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRT------ADVIERVAGEAATSGSLFGARRKLILLDEVDGIHGN 113 (482)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCEEEEccccccc------HHHHHHHHHHhhccCcccCCCCeEEEEecCcccccc
Confidence 47899999999999999999999999999999987543 3466666666654322223 6889999999997653
Q ss_pred CCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccc-cCCCCCCCccee-cCCCHHHHHH
Q 020787 133 FGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYA-PLIRDGRMEKFY-WQPNLEDILN 210 (321)
Q Consensus 133 ~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDp-ALlRpGRfDr~i-~~Pd~~~R~~ 210 (321)
.+ +.....|+.++. ..+.|||+++|++..+.+ +|++ |....- -.|+..+...
T Consensus 114 ~d--------~~~~~aL~~~l~----------------~~~~~iIli~n~~~~~~~k~Lrs--r~~~I~f~~~~~~~i~~ 167 (482)
T PRK04195 114 ED--------RGGARAILELIK----------------KAKQPIILTANDPYDPSLRELRN--ACLMIEFKRLSTRSIVP 167 (482)
T ss_pred cc--------hhHHHHHHHHHH----------------cCCCCEEEeccCccccchhhHhc--cceEEEecCCCHHHHHH
Confidence 21 111234555544 235789999999999988 5655 333322 2489999999
Q ss_pred HHHHHhhcCC--CCHHHHHHhhhCCCC
Q 020787 211 IVHRMYEKDG--ITKDEVGSIVKTFPN 235 (321)
Q Consensus 211 Il~~~~~~~~--l~~~dl~~L~d~f~g 235 (321)
+|+.+++..+ ++.+.+..|+....|
T Consensus 168 ~L~~i~~~egi~i~~eaL~~Ia~~s~G 194 (482)
T PRK04195 168 VLKRICRKEGIECDDEALKEIAERSGG 194 (482)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 9998887665 567888888887655
No 55
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=5.6e-14 Score=147.91 Aligned_cols=163 Identities=13% Similarity=0.104 Sum_probs=127.4
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeeccccccccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeecccccCCCCC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG 134 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~~r~~ 134 (321)
.++|||+||||||+.++++|.++|++++.+++.||++.-.+-.|..+-..|.+|+.. .|||||+-.+|.+....+
T Consensus 433 ~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~-----~pavifl~~~dvl~id~d 507 (953)
T KOG0736|consen 433 SVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRARRC-----SPAVLFLRNLDVLGIDQD 507 (953)
T ss_pred EEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHHhhc-----CceEEEEeccceeeecCC
Confidence 689999999999999999999999999999999999999999999999999999866 899999999999774333
Q ss_pred CCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccccCCCCCCCcceecCCCHHHHHHHHHH
Q 020787 135 NTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHR 214 (321)
Q Consensus 135 ~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpALlRpGRfDr~i~~Pd~~~R~~Il~~ 214 (321)
+ +....-..+...+|.+ |.++ . ..+++.||+||+..+.|+|...+-=+++-.+-.|++++|.+|||.
T Consensus 508 g-ged~rl~~~i~~~ls~-e~~~----------~-~~~~~ivv~t~~s~~~lp~~i~~~f~~ei~~~~lse~qRl~iLq~ 574 (953)
T KOG0736|consen 508 G-GEDARLLKVIRHLLSN-EDFK----------F-SCPPVIVVATTSSIEDLPADIQSLFLHEIEVPALSEEQRLEILQW 574 (953)
T ss_pred C-chhHHHHHHHHHHHhc-cccc----------C-CCCceEEEEeccccccCCHHHHHhhhhhccCCCCCHHHHHHHHHH
Confidence 3 2222123333455542 2110 1 146789999999999999999886666666667999999999999
Q ss_pred HhhcCCCCH-HHHHHhhhCCCC
Q 020787 215 MYEKDGITK-DEVGSIVKTFPN 235 (321)
Q Consensus 215 ~~~~~~l~~-~dl~~L~d~f~g 235 (321)
++....++. .-...++...+|
T Consensus 575 y~~~~~~n~~v~~k~~a~~t~g 596 (953)
T KOG0736|consen 575 YLNHLPLNQDVNLKQLARKTSG 596 (953)
T ss_pred HHhccccchHHHHHHHHHhcCC
Confidence 988877763 444555544444
No 56
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.56 E-value=7.8e-15 Score=136.59 Aligned_cols=155 Identities=19% Similarity=0.183 Sum_probs=101.5
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeeccccccccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeecccccCCCCC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG 134 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~~r~~ 134 (321)
.++||||||||||++|+++|++++..+..++++.+... + .+.+.+.. .+.+.+|||||||.+.+.
T Consensus 32 ~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~~-----~-~l~~~l~~-------~~~~~vl~iDEi~~l~~~-- 96 (305)
T TIGR00635 32 HLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEKP-----G-DLAAILTN-------LEEGDVLFIDEIHRLSPA-- 96 (305)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcCc-----h-hHHHHHHh-------cccCCEEEEehHhhhCHH--
Confidence 46899999999999999999999999887776654431 1 22222221 236899999999987532
Q ss_pred CCccchhhHHHHHHHHhhcCCC-CccccCcccccc---CCCCCccEEEeeCCCCCccccCCCCCCCcceec--CCCHHHH
Q 020787 135 NTQMTVNNQIVVGTLMNLSDNP-TRVSIGQDWRES---DITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYW--QPNLEDI 208 (321)
Q Consensus 135 ~t~~~v~~q~V~~tLl~llD~~-~~vql~g~~~~~---~~~~~V~VIaaTNrp~~LDpALlRpGRfDr~i~--~Pd~~~R 208 (321)
....|.+++++- ..+.++..+... ...+.+.+|++||++..++++|+. ||...+. .|+.++.
T Consensus 97 ----------~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~~~l~~~l~s--R~~~~~~l~~l~~~e~ 164 (305)
T TIGR00635 97 ----------VEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRAGMLTSPLRD--RFGIILRLEFYTVEEL 164 (305)
T ss_pred ----------HHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCccccCHHHHh--hcceEEEeCCCCHHHH
Confidence 111233333211 011111111110 012346788899999999999887 8876553 4899999
Q ss_pred HHHHHHHhhcC--CCCHHHHHHhhhCCCCC
Q 020787 209 LNIVHRMYEKD--GITKDEVGSIVKTFPNQ 236 (321)
Q Consensus 209 ~~Il~~~~~~~--~l~~~dl~~L~d~f~gq 236 (321)
.+|++...... .++.+.+..|+..+.|-
T Consensus 165 ~~il~~~~~~~~~~~~~~al~~ia~~~~G~ 194 (305)
T TIGR00635 165 AEIVSRSAGLLNVEIEPEAALEIARRSRGT 194 (305)
T ss_pred HHHHHHHHHHhCCCcCHHHHHHHHHHhCCC
Confidence 99998777654 46677777787766553
No 57
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.56 E-value=3.5e-14 Score=150.95 Aligned_cols=183 Identities=20% Similarity=0.284 Sum_probs=124.0
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeecccccc---------ccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeec
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELES---------ERAGEPGKLIRERYRTASQVVQNQGKMSCLMIND 125 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s---------~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDE 125 (321)
+++|+||||||||++++++|+.++.+|+.++.+.+.+ .|.|..+..+.+.+..|.. ..+||||||
T Consensus 351 ~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~~~~~g~~~G~~~~~l~~~~~------~~~villDE 424 (784)
T PRK10787 351 ILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGV------KNPLFLLDE 424 (784)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccchhccCCCCCcHHHHHHHhcCC------CCCEEEEEC
Confidence 7999999999999999999999999999998776543 4888877777777776532 234789999
Q ss_pred ccccCCCCCCCccchhhHHHHHHHHhhcCCCCccccCcccc--ccCCCCCccEEEeeCCCCCccccCCCCCCCcceecC-
Q 020787 126 IDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWR--ESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQ- 202 (321)
Q Consensus 126 IDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~--~~~~~~~V~VIaaTNrp~~LDpALlRpGRfDr~i~~- 202 (321)
||...+.+.+ .....|++++|.-++...-..|- ..+ .++|.+|+|||.. .|+|||+. ||+-.-+.
T Consensus 425 idk~~~~~~g--------~~~~aLlevld~~~~~~~~d~~~~~~~d-ls~v~~i~TaN~~-~i~~aLl~--R~~ii~~~~ 492 (784)
T PRK10787 425 IDKMSSDMRG--------DPASALLEVLDPEQNVAFSDHYLEVDYD-LSDVMFVATSNSM-NIPAPLLD--RMEVIRLSG 492 (784)
T ss_pred hhhcccccCC--------CHHHHHHHHhccccEEEEeccccccccc-CCceEEEEcCCCC-CCCHHHhc--ceeeeecCC
Confidence 9987653211 13357888888322222111111 122 5689999999988 59999997 99864443
Q ss_pred CCHHHHHHHHHHHhhc----------C--CCCHHHHHHhhhCCCCCcchhhHH-HHHhHhHHHHHHHHHh
Q 020787 203 PNLEDILNIVHRMYEK----------D--GITKDEVGSIVKTFPNQALDFYGA-LRSRTYDRSISKWIDD 259 (321)
Q Consensus 203 Pd~~~R~~Il~~~~~~----------~--~l~~~dl~~L~d~f~gq~idf~gA-lra~~~d~~~~~~i~~ 259 (321)
++.++..+|.+.++.. . .++.+-+..|+.+|. .-+|| -..|.....+++.+..
T Consensus 493 ~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~~yt----~e~GaR~LeR~I~~i~r~~l~~ 558 (784)
T PRK10787 493 YTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYT----REAGVRSLEREISKLCRKAVKQ 558 (784)
T ss_pred CCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHHhCC----cccCCcHHHHHHHHHHHHHHHH
Confidence 6899999999766631 1 245666777776554 23554 2233344445555544
No 58
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.55 E-value=4.7e-14 Score=131.21 Aligned_cols=165 Identities=15% Similarity=0.241 Sum_probs=105.2
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeec------cccccccCCCcHHHHHHHHHHHHh--------------hhhh
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSA------GELESERAGEPGKLIRERYRTASQ--------------VVQN 114 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~------~eL~s~~~GEser~IR~~F~~A~~--------------~~~~ 114 (321)
-++|+||||||||++|+++|+.+|.+++.+++ ++++..|.|...+.+.+-|-.... ....
T Consensus 23 ~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~A 102 (262)
T TIGR02640 23 PVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLTLA 102 (262)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHHHH
Confidence 46799999999999999999999999999865 466666665554444433321000 0000
Q ss_pred cCCceEEEeecccccCCCCCCCccchhhHHHHHHHHhhcCCCCccccCcccccc---CCCCCccEEEeeCCCC-----Cc
Q 020787 115 QGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRES---DITNRIPIIFTGNDFS-----TI 186 (321)
Q Consensus 115 ~gaPcILFIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~---~~~~~V~VIaaTNrp~-----~L 186 (321)
.....+|+|||||..-+ .+...|+++|+. ..+.+++.-... ...++.-||+|+|... .+
T Consensus 103 ~~~g~~lllDEi~r~~~------------~~q~~Ll~~Le~-~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~~l 169 (262)
T TIGR02640 103 VREGFTLVYDEFTRSKP------------ETNNVLLSVFEE-GVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVHET 169 (262)
T ss_pred HHcCCEEEEcchhhCCH------------HHHHHHHHHhcC-CeEEccCCCCCCceEecCCCCEEEEeeCCccccceecc
Confidence 01457999999998532 244567777763 223343310000 0123566899999763 56
Q ss_pred cccCCCCCCCcc-eecCCCHHHHHHHHHHHhhcCCCCHHHHHHhhhCCCCCcchhhHHHH
Q 020787 187 YAPLIRDGRMEK-FYWQPNLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALR 245 (321)
Q Consensus 187 DpALlRpGRfDr-~i~~Pd~~~R~~Il~~~~~~~~l~~~dl~~L~d~f~gq~idf~gAlr 245 (321)
+++|++ ||=. .+..|++++-.+|++.++ +++.+.+++++ +++.++|
T Consensus 170 ~~aL~~--R~~~i~i~~P~~~~e~~Il~~~~---~~~~~~~~~iv--------~~~~~~R 216 (262)
T TIGR02640 170 QDALLD--RLITIFMDYPDIDTETAILRAKT---DVAEDSAATIV--------RLVREFR 216 (262)
T ss_pred cHHHHh--hcEEEECCCCCHHHHHHHHHHhh---CCCHHHHHHHH--------HHHHHHH
Confidence 788887 7743 223599999999998876 45666666665 5666666
No 59
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.54 E-value=4.4e-14 Score=131.65 Aligned_cols=154 Identities=17% Similarity=0.184 Sum_probs=91.3
Q ss_pred hhHhccccCCCCcHHHHHHHHHHHcCCceEEeeccccccccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeecccccCCC
Q 020787 53 MASLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGR 132 (321)
Q Consensus 53 ~~iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~~r 132 (321)
++.++||||||||||+||+.+|+++|++|...||+.+.. ..-+..+.... +...|||||||+..-+
T Consensus 50 l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k------~~dl~~il~~l-------~~~~ILFIDEIHRlnk- 115 (233)
T PF05496_consen 50 LDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEK------AGDLAAILTNL-------KEGDILFIDEIHRLNK- 115 (233)
T ss_dssp --EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--S------CHHHHHHHHT---------TT-EEEECTCCC--H-
T ss_pred cceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhh------HHHHHHHHHhc-------CCCcEEEEechhhccH-
Confidence 457899999999999999999999999999999987653 12233333222 2578999999987632
Q ss_pred CCCCccchhhHHHHHHHHhhcCCCCc-cccCccccccC---CCCCccEEEeeCCCCCccccCCCCCCCcceecC--CCHH
Q 020787 133 FGNTQMTVNNQIVVGTLMNLSDNPTR-VSIGQDWRESD---ITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQ--PNLE 206 (321)
Q Consensus 133 ~~~t~~~v~~q~V~~tLl~llD~~~~-vql~g~~~~~~---~~~~V~VIaaTNrp~~LDpALlRpGRfDr~i~~--Pd~~ 206 (321)
.++..|+..|.+-.. +-++....... ..++-.+|+||+|...|.+||+= ||--...+ =+.+
T Consensus 116 -----------~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~g~ls~pLrd--RFgi~~~l~~Y~~~ 182 (233)
T PF05496_consen 116 -----------AQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRAGLLSSPLRD--RFGIVLRLEFYSEE 182 (233)
T ss_dssp -----------HHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESSGCCTSHCCCT--TSSEEEE----THH
T ss_pred -----------HHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeeccccccchhHHh--hcceecchhcCCHH
Confidence 344456666643322 22222111100 02355679999999999999986 77654322 4777
Q ss_pred HHHHHHHHHhhcCC--CCHHHHHHhhhCC
Q 020787 207 DILNIVHRMYEKDG--ITKDEVGSIVKTF 233 (321)
Q Consensus 207 ~R~~Il~~~~~~~~--l~~~dl~~L~d~f 233 (321)
+-..|++.-.+..+ ++.+....++...
T Consensus 183 el~~Iv~r~a~~l~i~i~~~~~~~Ia~rs 211 (233)
T PF05496_consen 183 ELAKIVKRSARILNIEIDEDAAEEIARRS 211 (233)
T ss_dssp HHHHHHHHCCHCTT-EE-HHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhCCCcCHHHHHHHHHhc
Confidence 88888876555554 4555555555433
No 60
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.54 E-value=1.4e-14 Score=144.17 Aligned_cols=101 Identities=18% Similarity=0.283 Sum_probs=77.3
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeeccccc-cccCCCc-HHHHHHHHHHHHhhhhhcCCceEEEeecccccCCC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELE-SERAGEP-GKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGR 132 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~-s~~~GEs-er~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~~r 132 (321)
-++|+||||||||++|+++|+.++++|+.++++++. ..|+|+. +..++.+++.|.-..+ +..++||||||||.+.++
T Consensus 110 ~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG~d~e~~l~~l~~~~~~~~~-~a~~gIi~iDEIdkl~~~ 188 (412)
T PRK05342 110 NILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVE-KAQRGIVYIDEIDKIARK 188 (412)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcccchHHHHHHHHHHhccccHH-HcCCcEEEEechhhhccc
Confidence 588999999999999999999999999999999986 4799986 4455666655432222 347899999999999876
Q ss_pred CCCCc--cchhhHHHHHHHHhhcCCC
Q 020787 133 FGNTQ--MTVNNQIVVGTLMNLSDNP 156 (321)
Q Consensus 133 ~~~t~--~~v~~q~V~~tLl~llD~~ 156 (321)
.++.+ .++....|++.||.+||+.
T Consensus 189 ~~~~~~~~d~s~~~vQ~~LL~~Leg~ 214 (412)
T PRK05342 189 SENPSITRDVSGEGVQQALLKILEGT 214 (412)
T ss_pred cCCCCcCCCcccHHHHHHHHHHHhcC
Confidence 44322 2343446888999999853
No 61
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.53 E-value=4.8e-14 Score=141.34 Aligned_cols=152 Identities=18% Similarity=0.222 Sum_probs=116.1
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeeccccc-cccCC-CcHHHHHHHHHHHHhhhhh------------------
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELE-SERAG-EPGKLIRERYRTASQVVQN------------------ 114 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~-s~~~G-Eser~IR~~F~~A~~~~~~------------------ 114 (321)
.++|+||||||||++|+++|+.++++|+.++++++. .+|+| +.|+.+|++|..|...++.
T Consensus 49 ~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~dvE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~ri 128 (441)
T TIGR00390 49 NILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDVESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERI 128 (441)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 678999999999999999999999999999999987 48999 7999999999998221100
Q ss_pred --------------------------------------------------------------------------------
Q 020787 115 -------------------------------------------------------------------------------- 114 (321)
Q Consensus 115 -------------------------------------------------------------------------------- 114 (321)
T Consensus 129 v~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (441)
T TIGR00390 129 VDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDKEIEIDVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQK 208 (441)
T ss_pred HHHhcCCccccccccccccchHHHHHHHHHHHhcCCccCcEEEEeecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCC
Confidence
Q ss_pred ------------------------------------cCCceEEEeecccccCCCCCCCccchhhHHHHHHHHhhcCCCCc
Q 020787 115 ------------------------------------QGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTR 158 (321)
Q Consensus 115 ------------------------------------~gaPcILFIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~ 158 (321)
.-.--||||||||.++.+..+.+.++...=|++-||-++.|-+
T Consensus 209 ~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~~~e~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~- 287 (441)
T TIGR00390 209 KKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAIDAVEQSGIIFIDEIDKIAKKGESSGADVSREGVQRDLLPIVEGST- 287 (441)
T ss_pred CceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEEEchhhhcccCCCCCCCCCccchhccccccccCce-
Confidence 0134599999999999765433445655668889999998743
Q ss_pred cccCccccccCCCCCccEEEee----CCCCCccccCCCCCCCcceecC--CCHHHHHHHH
Q 020787 159 VSIGQDWRESDITNRIPIIFTG----NDFSTIYAPLIRDGRMEKFYWQ--PNLEDILNIV 212 (321)
Q Consensus 159 vql~g~~~~~~~~~~V~VIaaT----Nrp~~LDpALlRpGRfDr~i~~--Pd~~~R~~Il 212 (321)
|+.. +...+ +.++..|+++ ..|++|=|.|. |||-..+.+ .+.++=..||
T Consensus 288 v~~k--~~~v~-T~~ILFI~~GAF~~~kp~DlIPEl~--GR~Pi~v~L~~L~~edL~rIL 342 (441)
T TIGR00390 288 VNTK--YGMVK-TDHILFIAAGAFQLAKPSDLIPELQ--GRFPIRVELQALTTDDFERIL 342 (441)
T ss_pred eeec--ceeEE-CCceeEEecCCcCCCChhhccHHHh--CccceEEECCCCCHHHHHHHh
Confidence 3332 22333 5678888863 57888888886 699987764 6888888887
No 62
>PRK06893 DNA replication initiation factor; Validated
Probab=99.53 E-value=2.4e-14 Score=130.51 Aligned_cols=143 Identities=13% Similarity=0.194 Sum_probs=91.6
Q ss_pred HhccccCCCCcHHHHHHHHHHHc-----CCceEEeeccccccccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeeccccc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM-----GIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAG 129 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~-----g~~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg 129 (321)
.|.||||||||||.|++|+|+++ .+.++.++..+.. ..++++... ++.+|+|||||.+
T Consensus 41 ~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~~~----------~~~~~~~~~-------~~dlLilDDi~~~ 103 (229)
T PRK06893 41 FFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQYF----------SPAVLENLE-------QQDLVCLDDLQAV 103 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhhhh----------hHHHHhhcc-------cCCEEEEeChhhh
Confidence 47899999999999999999986 4555554322111 112222222 5789999999998
Q ss_pred CCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEee-CCCCCcc---ccCCCCCCCcceec--CC
Q 020787 130 LGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTG-NDFSTIY---APLIRDGRMEKFYW--QP 203 (321)
Q Consensus 130 ~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaT-Nrp~~LD---pALlRpGRfDr~i~--~P 203 (321)
.++.. .+ ..|.++++.. . + ..+..||.|+ +.|+.++ |.|....+....+. .|
T Consensus 104 ~~~~~-------~~---~~l~~l~n~~---------~--~-~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~p 161 (229)
T PRK06893 104 IGNEE-------WE---LAIFDLFNRI---------K--E-QGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDL 161 (229)
T ss_pred cCChH-------HH---HHHHHHHHHH---------H--H-cCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCC
Confidence 75421 11 2345554410 0 0 1122334444 4566665 78888555555554 49
Q ss_pred CHHHHHHHHHHHhhcC--CCCHHHHHHhhhCCCCC
Q 020787 204 NLEDILNIVHRMYEKD--GITKDEVGSIVKTFPNQ 236 (321)
Q Consensus 204 d~~~R~~Il~~~~~~~--~l~~~dl~~L~d~f~gq 236 (321)
+.++|.+||+...... .++.+-+.-|+..++|.
T Consensus 162 d~e~~~~iL~~~a~~~~l~l~~~v~~~L~~~~~~d 196 (229)
T PRK06893 162 TDEQKIIVLQRNAYQRGIELSDEVANFLLKRLDRD 196 (229)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCC
Confidence 9999999999777644 57888889999888873
No 63
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.52 E-value=5.7e-14 Score=140.85 Aligned_cols=153 Identities=21% Similarity=0.237 Sum_probs=118.1
Q ss_pred hHhccccCCCCcHHHHHHHHHHHcCCceEEeecccccc-ccCC-CcHHHHHHHHHHHHhhhh------------------
Q 020787 54 ASLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELES-ERAG-EPGKLIRERYRTASQVVQ------------------ 113 (321)
Q Consensus 54 ~iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s-~~~G-Eser~IR~~F~~A~~~~~------------------ 113 (321)
..++|+||||||||.+|+++|+.++++|+.++++++.. +|+| +.|..+|++|..|..+++
T Consensus 51 ~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~r 130 (443)
T PRK05201 51 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDVESIIRDLVEIAVKMVREEKREKVREKAEEAAEER 130 (443)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 36799999999999999999999999999999999996 7999 779999999999921100
Q ss_pred --------------------------------------------------------------------------------
Q 020787 114 -------------------------------------------------------------------------------- 113 (321)
Q Consensus 114 -------------------------------------------------------------------------------- 113 (321)
T Consensus 131 i~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (443)
T PRK05201 131 ILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDKEIEIEVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKK 210 (443)
T ss_pred HHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCcEEEEEecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCC
Confidence
Q ss_pred -----------------------------------hcCCceEEEeecccccCCCCCCCccchhhHHHHHHHHhhcCCCCc
Q 020787 114 -----------------------------------NQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTR 158 (321)
Q Consensus 114 -----------------------------------~~gaPcILFIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~ 158 (321)
..-..-|+||||||.++.+.++.+.++...=|++-||-++.|.+
T Consensus 211 ~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~- 289 (443)
T PRK05201 211 KKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNGIVFIDEIDKIAARGGSSGPDVSREGVQRDLLPLVEGST- 289 (443)
T ss_pred CceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEEEcchhhcccCCCCCCCCCccchhcccccccccce-
Confidence 00134599999999999765433446656668889999998753
Q ss_pred cccCccccccCCCCCccEEEe----eCCCCCccccCCCCCCCcceecC--CCHHHHHHHH
Q 020787 159 VSIGQDWRESDITNRIPIIFT----GNDFSTIYAPLIRDGRMEKFYWQ--PNLEDILNIV 212 (321)
Q Consensus 159 vql~g~~~~~~~~~~V~VIaa----TNrp~~LDpALlRpGRfDr~i~~--Pd~~~R~~Il 212 (321)
|+.. +...+ +.++..|++ ...|++|-|.|+ |||-..+.+ .+.++=..||
T Consensus 290 v~~k--~~~i~-T~~ILFI~~GAF~~~kp~DlIPEl~--GR~Pi~v~L~~L~~~dL~~IL 344 (443)
T PRK05201 290 VSTK--YGMVK-TDHILFIASGAFHVSKPSDLIPELQ--GRFPIRVELDALTEEDFVRIL 344 (443)
T ss_pred eeec--ceeEE-CCceeEEecCCcCCCChhhccHHHh--CccceEEECCCCCHHHHHHHh
Confidence 3332 22233 567888885 467888988987 599987765 6888888888
No 64
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.52 E-value=9.8e-14 Score=129.84 Aligned_cols=146 Identities=18% Similarity=0.251 Sum_probs=99.4
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeeccccccccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeecccccCCCCC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG 134 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~~r~~ 134 (321)
.++||||||+|||++|+++|++.+..++.+++++ . . -..+|+............+.+++|+|||+|.....
T Consensus 45 ~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~--~----~-~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~~-- 115 (316)
T PHA02544 45 MLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD--C----R-IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGLA-- 115 (316)
T ss_pred EEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc--c----c-HHHHHHHHHHHHHhhcccCCCeEEEEECcccccCH--
Confidence 6778999999999999999999999999999876 2 1 23344432222222111356899999999986211
Q ss_pred CCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccccCCCCCCCcceec-CCCHHHHHHHHH
Q 020787 135 NTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYW-QPNLEDILNIVH 213 (321)
Q Consensus 135 ~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpALlRpGRfDr~i~-~Pd~~~R~~Il~ 213 (321)
..+..|.++++.+ ..++++|+|||.++.++++|+. |+....+ .|+.+++.+|++
T Consensus 116 ---------~~~~~L~~~le~~--------------~~~~~~Ilt~n~~~~l~~~l~s--R~~~i~~~~p~~~~~~~il~ 170 (316)
T PHA02544 116 ---------DAQRHLRSFMEAY--------------SKNCSFIITANNKNGIIEPLRS--RCRVIDFGVPTKEEQIEMMK 170 (316)
T ss_pred ---------HHHHHHHHHHHhc--------------CCCceEEEEcCChhhchHHHHh--hceEEEeCCCCHHHHHHHHH
Confidence 1223344445421 2468899999999999999988 7766555 699999998875
Q ss_pred HH-------hhcC--CCCHHHHHHhhhCCC
Q 020787 214 RM-------YEKD--GITKDEVGSIVKTFP 234 (321)
Q Consensus 214 ~~-------~~~~--~l~~~dl~~L~d~f~ 234 (321)
.+ +++. +++.+.+..++....
T Consensus 171 ~~~~~~~~~~~~~~~~i~~~al~~l~~~~~ 200 (316)
T PHA02544 171 QMIVRCKGILEAEGVEVDMKVLAALVKKNF 200 (316)
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHhcC
Confidence 43 2222 456666677765443
No 65
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.50 E-value=5.8e-14 Score=137.25 Aligned_cols=159 Identities=21% Similarity=0.300 Sum_probs=103.4
Q ss_pred HhccccCCCCcHHHHHHHHHHHc-----CCceEEeeccccccccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeeccccc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM-----GIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAG 129 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~-----g~~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg 129 (321)
.|+||||||||||+|++|+++++ +..++.+++.++.+.+...-...-.+.|.... + .+.+|+|||||.+
T Consensus 138 ~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~---~---~~dlLiiDDi~~l 211 (405)
T TIGR00362 138 PLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRNNKMEEFKEKY---R---SVDLLLIDDIQFL 211 (405)
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHcCCHHHHHHHH---H---hCCEEEEehhhhh
Confidence 57899999999999999999987 78899999988776543211100111232211 1 4789999999998
Q ss_pred CCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCC-CCC---ccccCCCCCCCcc--eec--
Q 020787 130 LGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGND-FST---IYAPLIRDGRMEK--FYW-- 201 (321)
Q Consensus 130 ~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNr-p~~---LDpALlRpGRfDr--~i~-- 201 (321)
.++.. ....|+.+++.. . ..+.++|+|+|+ |+. +++.|+- ||.. .+.
T Consensus 212 ~~~~~----------~~~~l~~~~n~~---------~----~~~~~iiits~~~p~~l~~l~~~l~S--Rl~~g~~v~i~ 266 (405)
T TIGR00362 212 AGKER----------TQEEFFHTFNAL---------H----ENGKQIVLTSDRPPKELPGLEERLRS--RFEWGLVVDIE 266 (405)
T ss_pred cCCHH----------HHHHHHHHHHHH---------H----HCCCCEEEecCCCHHHHhhhhhhhhh--hccCCeEEEeC
Confidence 75421 112344444410 0 123456677665 444 4566664 8875 233
Q ss_pred CCCHHHHHHHHHHHhhcCC--CCHHHHHHhhhCCCCCcchhhHHH
Q 020787 202 QPNLEDILNIVHRMYEKDG--ITKDEVGSIVKTFPNQALDFYGAL 244 (321)
Q Consensus 202 ~Pd~~~R~~Il~~~~~~~~--l~~~dl~~L~d~f~gq~idf~gAl 244 (321)
.|+.++|.+||+.+++..+ ++.+.+..|+..+++--=+.-||+
T Consensus 267 ~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~~~r~l~~~l 311 (405)
T TIGR00362 267 PPDLETRLAILQKKAEEEGLELPDEVLEFIAKNIRSNVRELEGAL 311 (405)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHH
Confidence 4999999999998887554 678888999988877433344444
No 66
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.48 E-value=8.2e-14 Score=138.95 Aligned_cols=100 Identities=18% Similarity=0.289 Sum_probs=76.2
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeeccccc-cccCCCc-HHHHHHHHHHHHhhhhhcCCceEEEeecccccCCC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELE-SERAGEP-GKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGR 132 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~-s~~~GEs-er~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~~r 132 (321)
.++|+||||||||++|+++|+.++++|+.++++.|. .+|+|+. +..+...++.+.-... +..|+||||||||.+.++
T Consensus 118 ~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gyvG~d~e~~L~~~~~~~~~~l~-~a~~gIV~lDEIdkl~~~ 196 (413)
T TIGR00382 118 NILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVE-KAQKGIIYIDEIDKISRK 196 (413)
T ss_pred eEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhccccccccccHHHHHHHHHHhCcccHH-hcccceEEecccchhchh
Confidence 688999999999999999999999999999999876 4699996 5556666654421111 347899999999998876
Q ss_pred CCCCc--cchhhHHHHHHHHhhcCC
Q 020787 133 FGNTQ--MTVNNQIVVGTLMNLSDN 155 (321)
Q Consensus 133 ~~~t~--~~v~~q~V~~tLl~llD~ 155 (321)
.++.+ .++....|++.||.+|+|
T Consensus 197 ~~~~s~~~dvsg~~vq~~LL~iLeG 221 (413)
T TIGR00382 197 SENPSITRDVSGEGVQQALLKIIEG 221 (413)
T ss_pred hccccccccccchhHHHHHHHHhhc
Confidence 55322 234344678889999985
No 67
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=1.1e-13 Score=144.84 Aligned_cols=168 Identities=18% Similarity=0.253 Sum_probs=131.5
Q ss_pred hhhhhccCccccchhhhh-HhccccCCCCcHHHHHHHHHHHcC----CceEEeeccccccccCCCcHHHHHHHHHHHHhh
Q 020787 37 RSFEYLQGDYYIAPVFMA-SLCIWGGKGQGKSFQTELIFQAMG----IEPVIMSAGELESERAGEPGKLIRERYRTASQV 111 (321)
Q Consensus 37 ~~~~~~~~~~~~~p~f~~-iLgL~GPPGcGKTllaravA~e~g----~~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~ 111 (321)
+++......|.+.|-|.. -++|+||||||||-|+++++++.. +.+..++++.|-.+-.-.--+.++.+|.+|..+
T Consensus 414 ~s~kke~~n~~~spv~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vfse~~~~ 493 (952)
T KOG0735|consen 414 PSYKKENANQELSPVFRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLEKIQKFLNNVFSEALWY 493 (952)
T ss_pred chhhhhhhhhhcccccccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHHHHHHHHHHHHHHHHhh
Confidence 344444555888886665 789999999999999999998865 577789998887555545567899999999987
Q ss_pred hhhcCCceEEEeecccccCCCCC--CCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCcccc
Q 020787 112 VQNQGKMSCLMINDIDAGLGRFG--NTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAP 189 (321)
Q Consensus 112 ~~~~gaPcILFIDEIDAg~~r~~--~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpA 189 (321)
+|+||.+|++|++++-.+ ++|.++..+++..+|-...+ .|.. ..+.+-||++.+-..+|.|-
T Consensus 494 -----~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~---------~y~~--~~~~ia~Iat~qe~qtl~~~ 557 (952)
T KOG0735|consen 494 -----APSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIK---------IYLK--RNRKIAVIATGQELQTLNPL 557 (952)
T ss_pred -----CCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHH---------HHHc--cCcEEEEEEechhhhhcChh
Confidence 899999999999887333 56666666777776654443 1222 13467899999999999999
Q ss_pred CCCCCCCcceecC--CCHHHHHHHHHHHhhcCC
Q 020787 190 LIRDGRMEKFYWQ--PNLEDILNIVHRMYEKDG 220 (321)
Q Consensus 190 LlRpGRfDr~i~~--Pd~~~R~~Il~~~~~~~~ 220 (321)
|-=|++|+-.+-+ |+..+|.+||+..+++.-
T Consensus 558 L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~ 590 (952)
T KOG0735|consen 558 LVSPLLFQIVIALPAPAVTRRKEILTTIFSKNL 590 (952)
T ss_pred hcCccceEEEEecCCcchhHHHHHHHHHHHhhh
Confidence 9999999987654 899999999998887764
No 68
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.48 E-value=8.7e-13 Score=129.96 Aligned_cols=143 Identities=22% Similarity=0.263 Sum_probs=102.1
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeeccccccccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeecccccCCCCC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG 134 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~~r~~ 134 (321)
.++||||||||||++|+++|+.++..|+.+++.. .+.+.+|++++.+..... .++.+||||||||....
T Consensus 38 ~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~-------~~~~~ir~ii~~~~~~~~-~g~~~vL~IDEi~~l~~--- 106 (413)
T PRK13342 38 SMILWGPPGTGKTTLARIIAGATDAPFEALSAVT-------SGVKDLREVIEEARQRRS-AGRRTILFIDEIHRFNK--- 106 (413)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccc-------ccHHHHHHHHHHHHHhhh-cCCceEEEEechhhhCH---
Confidence 5788999999999999999999999999998863 235678899988865432 46789999999997532
Q ss_pred CCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEee--CCCCCccccCCCCCCCcceec-CCCHHHHHHH
Q 020787 135 NTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTG--NDFSTIYAPLIRDGRMEKFYW-QPNLEDILNI 211 (321)
Q Consensus 135 ~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaT--Nrp~~LDpALlRpGRfDr~i~-~Pd~~~R~~I 211 (321)
.....|+..+.+ ..+.+|++| |....++++|+. |+..+.+ .|+.++...+
T Consensus 107 ---------~~q~~LL~~le~----------------~~iilI~att~n~~~~l~~aL~S--R~~~~~~~~ls~e~i~~l 159 (413)
T PRK13342 107 ---------AQQDALLPHVED----------------GTITLIGATTENPSFEVNPALLS--RAQVFELKPLSEEDIEQL 159 (413)
T ss_pred ---------HHHHHHHHHhhc----------------CcEEEEEeCCCChhhhccHHHhc--cceeeEeCCCCHHHHHHH
Confidence 112245544441 245566654 334589999998 6643333 3688899999
Q ss_pred HHHHhhc----C-CCCHHHHHHhhhCCCC
Q 020787 212 VHRMYEK----D-GITKDEVGSIVKTFPN 235 (321)
Q Consensus 212 l~~~~~~----~-~l~~~dl~~L~d~f~g 235 (321)
++..+.. . .++.+.+..|+...+|
T Consensus 160 L~~~l~~~~~~~i~i~~~al~~l~~~s~G 188 (413)
T PRK13342 160 LKRALEDKERGLVELDDEALDALARLANG 188 (413)
T ss_pred HHHHHHHhhcCCCCCCHHHHHHHHHhCCC
Confidence 9876653 1 5677777777776655
No 69
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.46 E-value=5.4e-13 Score=124.75 Aligned_cols=153 Identities=11% Similarity=0.179 Sum_probs=99.9
Q ss_pred HhccccCCCCcHHHHHHHHHHHcC-----CceEEeecccccccc-------------CCC-------cHHHHHHHHHHHH
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMG-----IEPVIMSAGELESER-------------AGE-------PGKLIRERYRTAS 109 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g-----~~~i~vs~~eL~s~~-------------~GE-------ser~IR~~F~~A~ 109 (321)
.++||||||||||++|+++|+++. .+++.++++++.+.+ .|+ ....++++.+.+.
T Consensus 38 ~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (337)
T PRK12402 38 HLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYA 117 (337)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHH
Confidence 478999999999999999999985 356788887764321 111 1223444333333
Q ss_pred hhhhhcCCceEEEeecccccCCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCcccc
Q 020787 110 QVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAP 189 (321)
Q Consensus 110 ~~~~~~gaPcILFIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpA 189 (321)
......+.+.+|||||+|..... ....|..+++++ .....+|++||.++.+.++
T Consensus 118 ~~~~~~~~~~vlilDe~~~l~~~------------~~~~L~~~le~~--------------~~~~~~Il~~~~~~~~~~~ 171 (337)
T PRK12402 118 SYRPLSADYKTILLDNAEALRED------------AQQALRRIMEQY--------------SRTCRFIIATRQPSKLIPP 171 (337)
T ss_pred hcCCCCCCCcEEEEeCcccCCHH------------HHHHHHHHHHhc--------------cCCCeEEEEeCChhhCchh
Confidence 22111235679999999976321 122344555522 1235577777788888888
Q ss_pred CCCCCCCcce-ecCCCHHHHHHHHHHHhhcCC--CCHHHHHHhhhCCCC
Q 020787 190 LIRDGRMEKF-YWQPNLEDILNIVHRMYEKDG--ITKDEVGSIVKTFPN 235 (321)
Q Consensus 190 LlRpGRfDr~-i~~Pd~~~R~~Il~~~~~~~~--l~~~dl~~L~d~f~g 235 (321)
|.. |.... +..|+.++...+++.+++..+ ++.+.+..|+...+|
T Consensus 172 L~s--r~~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~~g 218 (337)
T PRK12402 172 IRS--RCLPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYAGG 218 (337)
T ss_pred hcC--CceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 876 44332 234899999999998887665 568888888887765
No 70
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.46 E-value=1.3e-13 Score=136.97 Aligned_cols=159 Identities=19% Similarity=0.268 Sum_probs=105.7
Q ss_pred HhccccCCCCcHHHHHHHHHHHc-----CCceEEeeccccccccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeeccccc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM-----GIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAG 129 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~-----g~~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg 129 (321)
.|+||||||||||+|++|+|+++ ++.++.+++.++.+.+...-...-.+-|.... .++.+|+|||||.+
T Consensus 150 ~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~------~~~dlLiiDDi~~l 223 (450)
T PRK00149 150 PLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKY------RSVDVLLIDDIQFL 223 (450)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHcCcHHHHHHHH------hcCCEEEEehhhhh
Confidence 58899999999999999999998 67789999998876554332211122333221 15889999999998
Q ss_pred CCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCC-CC---ccccCCCCCCCcc--ee--c
Q 020787 130 LGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDF-ST---IYAPLIRDGRMEK--FY--W 201 (321)
Q Consensus 130 ~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp-~~---LDpALlRpGRfDr--~i--~ 201 (321)
.++.. ....|+.+++.. . ..+.+||+|+|++ +. +++.|+- ||.. .+ .
T Consensus 224 ~~~~~----------~~~~l~~~~n~l---------~----~~~~~iiits~~~p~~l~~l~~~l~S--Rl~~gl~v~i~ 278 (450)
T PRK00149 224 AGKER----------TQEEFFHTFNAL---------H----EAGKQIVLTSDRPPKELPGLEERLRS--RFEWGLTVDIE 278 (450)
T ss_pred cCCHH----------HHHHHHHHHHHH---------H----HCCCcEEEECCCCHHHHHHHHHHHHh--HhcCCeeEEec
Confidence 75421 112334443310 0 1234567776664 34 5677664 8875 23 3
Q ss_pred CCCHHHHHHHHHHHhhcC--CCCHHHHHHhhhCCCCCcchhhHHH
Q 020787 202 QPNLEDILNIVHRMYEKD--GITKDEVGSIVKTFPNQALDFYGAL 244 (321)
Q Consensus 202 ~Pd~~~R~~Il~~~~~~~--~l~~~dl~~L~d~f~gq~idf~gAl 244 (321)
.|+.++|..||+...+.. .++.+-+..|++.+.|--=...|||
T Consensus 279 ~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~~~R~l~~~l 323 (450)
T PRK00149 279 PPDLETRIAILKKKAEEEGIDLPDEVLEFIAKNITSNVRELEGAL 323 (450)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHcCcCCCHHHHHHHH
Confidence 599999999999888754 4788889999998887533334443
No 71
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.46 E-value=1.1e-14 Score=120.84 Aligned_cols=119 Identities=16% Similarity=0.142 Sum_probs=74.2
Q ss_pred hccccCCCCcHHHHHHHHHHHcCCceEEeecccc------ccccCC---CcHHHHHHHHHHHHhhhhhcCCceEEEeecc
Q 020787 56 LCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGEL------ESERAG---EPGKLIRERYRTASQVVQNQGKMSCLMINDI 126 (321)
Q Consensus 56 LgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL------~s~~~G---Eser~IR~~F~~A~~~~~~~gaPcILFIDEI 126 (321)
++|+||||||||.+|+.+|+.++.+++.++.+.- ...|.= ..+ ..-..+-.|. ..++|+|||||
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~-~~~~~l~~a~------~~~~il~lDEi 74 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFE-FKDGPLVRAM------RKGGILVLDEI 74 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTC-EEE-CCCTTH------HEEEEEEESSC
T ss_pred EEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeecccccc-cccccccccc------cceeEEEECCc
Confidence 5799999999999999999999999998887553 332221 100 0000001111 16999999999
Q ss_pred cccCCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCC------CccEEEeeCCCC----CccccCCCCCCC
Q 020787 127 DAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITN------RIPIIFTGNDFS----TIYAPLIRDGRM 196 (321)
Q Consensus 127 DAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~------~V~VIaaTNrp~----~LDpALlRpGRf 196 (321)
+..- ..+...|++++++-...-..+.+.... .. +..||+|+|..+ .+++||+| ||
T Consensus 75 n~a~------------~~v~~~L~~ll~~~~~~~~~~~~~~~~-~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~--Rf 139 (139)
T PF07728_consen 75 NRAP------------PEVLESLLSLLEERRIQLPEGGEEIKE-PNNDLASPNFRIIATMNPRDKGRKELSPALLD--RF 139 (139)
T ss_dssp GG--------------HHHHHTTHHHHSSSEEEE-TSSSEEE---TT------EEEEEEESSST--TTTTCHHHHT--T-
T ss_pred ccCC------------HHHHHHHHHHHhhCcccccCCCcEEec-CcccccccceEEEEEEcCCCCCcCcCCHHHHh--hC
Confidence 9863 246667788887543222222111111 11 378999999999 99999988 65
No 72
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.43 E-value=1.1e-12 Score=124.64 Aligned_cols=137 Identities=18% Similarity=0.306 Sum_probs=88.3
Q ss_pred HhccccCCCCcHHHHHHHHHHHcC---------CceEEeecccccc----------ccC--CC-------c-HHHHHHHH
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMG---------IEPVIMSAGELES----------ERA--GE-------P-GKLIRERY 105 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g---------~~~i~vs~~eL~s----------~~~--GE-------s-er~IR~~F 105 (321)
.+.||||||||||++++++++++. +.++.+++.+.-+ +.. |. + ++.++.+|
T Consensus 42 ~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 121 (365)
T TIGR02928 42 NVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLY 121 (365)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHH
Confidence 578999999999999999998763 5677788755432 111 21 2 23344444
Q ss_pred HHHHhhhhhcCCceEEEeecccccCCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCC-
Q 020787 106 RTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFS- 184 (321)
Q Consensus 106 ~~A~~~~~~~gaPcILFIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~- 184 (321)
+... ..++|+||+|||+|.+.+. . +.+..+|+.+.+.. .....++.+|++||+++
T Consensus 122 ~~l~----~~~~~~vlvIDE~d~L~~~----~-----~~~L~~l~~~~~~~-----------~~~~~~v~lI~i~n~~~~ 177 (365)
T TIGR02928 122 KELN----ERGDSLIIVLDEIDYLVGD----D-----DDLLYQLSRARSNG-----------DLDNAKVGVIGISNDLKF 177 (365)
T ss_pred HHHH----hcCCeEEEEECchhhhccC----C-----cHHHHhHhcccccc-----------CCCCCeEEEEEEECCcch
Confidence 4332 2457999999999998732 1 12333444432210 11135788999999997
Q ss_pred --CccccCCCCCCCc-ceec--CCCHHHHHHHHHHHhh
Q 020787 185 --TIYAPLIRDGRME-KFYW--QPNLEDILNIVHRMYE 217 (321)
Q Consensus 185 --~LDpALlRpGRfD-r~i~--~Pd~~~R~~Il~~~~~ 217 (321)
.+++.+.+ ||. +.+. .++.++..+|++..++
T Consensus 178 ~~~l~~~~~s--~~~~~~i~f~p~~~~e~~~il~~r~~ 213 (365)
T TIGR02928 178 RENLDPRVKS--SLCEEEIIFPPYDAEELRDILENRAE 213 (365)
T ss_pred HhhcCHHHhc--cCCcceeeeCCCCHHHHHHHHHHHHH
Confidence 47777765 564 3343 3689999999987765
No 73
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.42 E-value=1.1e-12 Score=126.09 Aligned_cols=154 Identities=15% Similarity=0.267 Sum_probs=95.5
Q ss_pred HhccccCCCCcHHHHHHHHHHHc-----CCceEEeeccccc----------cccCCC----cHHHHHHHHHHHHhhhhhc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM-----GIEPVIMSAGELE----------SERAGE----PGKLIRERYRTASQVVQNQ 115 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~-----g~~~i~vs~~eL~----------s~~~GE----ser~IR~~F~~A~~~~~~~ 115 (321)
.++||||||||||++++.+++++ ++.++.+++.+.- ++..|+ ......++|+...+..+..
T Consensus 57 ~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 136 (394)
T PRK00411 57 NVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDER 136 (394)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhc
Confidence 47899999999999999999887 6788889886432 222221 1112334444444444435
Q ss_pred CCceEEEeecccccCCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCC---CccccCCC
Q 020787 116 GKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFS---TIYAPLIR 192 (321)
Q Consensus 116 gaPcILFIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~---~LDpALlR 192 (321)
+.++||+|||+|.+..+.+ +.+..+|+..++. .+ ..++.||++||.++ .++|.+..
T Consensus 137 ~~~~viviDE~d~l~~~~~--------~~~l~~l~~~~~~------------~~-~~~v~vI~i~~~~~~~~~l~~~~~s 195 (394)
T PRK00411 137 DRVLIVALDDINYLFEKEG--------NDVLYSLLRAHEE------------YP-GARIGVIGISSDLTFLYILDPRVKS 195 (394)
T ss_pred CCEEEEEECCHhHhhccCC--------chHHHHHHHhhhc------------cC-CCeEEEEEEECCcchhhhcCHHHHh
Confidence 7899999999999873211 1233345544431 11 23788999999875 35555543
Q ss_pred CCCCc-ceec--CCCHHHHHHHHHHHhhc----CCCCHHHHHHhhh
Q 020787 193 DGRME-KFYW--QPNLEDILNIVHRMYEK----DGITKDEVGSIVK 231 (321)
Q Consensus 193 pGRfD-r~i~--~Pd~~~R~~Il~~~~~~----~~l~~~dl~~L~d 231 (321)
|+. +.+. .++.++..+|++..++. ..++.+.+..++.
T Consensus 196 --~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~ 239 (394)
T PRK00411 196 --VFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIAD 239 (394)
T ss_pred --cCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHH
Confidence 453 2333 25889999999876653 2355555544443
No 74
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.41 E-value=5.8e-13 Score=138.48 Aligned_cols=151 Identities=18% Similarity=0.198 Sum_probs=106.5
Q ss_pred HhccccCCCCcHHHHHHHHHHHc-----CCceEEeeccccccccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeeccccc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM-----GIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAG 129 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~-----g~~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg 129 (321)
-|.||||+|||||.|+.|+|+++ +..++.+++.++.+.+...-.....+.|++-. .++.+|+|||||.+
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~y------~~~DLLlIDDIq~l 389 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRY------REMDILLVDDIQFL 389 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHHh------hcCCEEEEehhccc
Confidence 38999999999999999999986 67889999999887765332222223444322 15899999999998
Q ss_pred CCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCC----CCccccCCCCCCCcce--ec--
Q 020787 130 LGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDF----STIYAPLIRDGRMEKF--YW-- 201 (321)
Q Consensus 130 ~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp----~~LDpALlRpGRfDr~--i~-- 201 (321)
.++.. .| ..|.++++.. . ..+..||+|+|++ ..|++.|+. ||..- +.
T Consensus 390 ~gke~-------tq---eeLF~l~N~l---------~----e~gk~IIITSd~~P~eL~~l~~rL~S--Rf~~GLvv~I~ 444 (617)
T PRK14086 390 EDKES-------TQ---EEFFHTFNTL---------H----NANKQIVLSSDRPPKQLVTLEDRLRN--RFEWGLITDVQ 444 (617)
T ss_pred cCCHH-------HH---HHHHHHHHHH---------H----hcCCCEEEecCCChHhhhhccHHHHh--hhhcCceEEcC
Confidence 76421 11 1233343310 0 1246788899886 357777877 88862 23
Q ss_pred CCCHHHHHHHHHHHhhcCC--CCHHHHHHhhhCCCCC
Q 020787 202 QPNLEDILNIVHRMYEKDG--ITKDEVGSIVKTFPNQ 236 (321)
Q Consensus 202 ~Pd~~~R~~Il~~~~~~~~--l~~~dl~~L~d~f~gq 236 (321)
.|+.+.|.+||+.+++... ++.+-+.-|+..+++.
T Consensus 445 ~PD~EtR~aIL~kka~~r~l~l~~eVi~yLa~r~~rn 481 (617)
T PRK14086 445 PPELETRIAILRKKAVQEQLNAPPEVLEFIASRISRN 481 (617)
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhccCC
Confidence 4999999999998887665 5677888888888764
No 75
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.41 E-value=1.3e-12 Score=101.93 Aligned_cols=124 Identities=18% Similarity=0.242 Sum_probs=82.5
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCc---eEEeeccccccc--------------cCCCcHHHHHHHHHHHHhhhhhcCC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIE---PVIMSAGELESE--------------RAGEPGKLIRERYRTASQVVQNQGK 117 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~---~i~vs~~eL~s~--------------~~GEser~IR~~F~~A~~~~~~~ga 117 (321)
.++|+||||||||++++++|..+... ++.++++..... ........++..+..|... .
T Consensus 4 ~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~ 78 (148)
T smart00382 4 VILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKL-----K 78 (148)
T ss_pred EEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhc-----C
Confidence 46899999999999999999999996 777777765432 3456778888888888754 5
Q ss_pred ceEEEeecccccCCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccccCCCCCCCc
Q 020787 118 MSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRME 197 (321)
Q Consensus 118 PcILFIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpALlRpGRfD 197 (321)
|++|||||++........ ............ .......+..||+|+|......+.++++ |++
T Consensus 79 ~~viiiDei~~~~~~~~~------~~~~~~~~~~~~------------~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~ 139 (148)
T smart00382 79 PDVLILDEITSLLDAEQE------ALLLLLEELRLL------------LLLKSEKNLTVILTTNDEKDLGPALLRR-RFD 139 (148)
T ss_pred CCEEEEECCcccCCHHHH------HHHHhhhhhHHH------------HHHHhcCCCEEEEEeCCCccCchhhhhh-ccc
Confidence 899999999997653210 000000000000 0001134688999999855555555555 888
Q ss_pred ceecC
Q 020787 198 KFYWQ 202 (321)
Q Consensus 198 r~i~~ 202 (321)
..+.+
T Consensus 140 ~~~~~ 144 (148)
T smart00382 140 RRIVL 144 (148)
T ss_pred eEEEe
Confidence 87764
No 76
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.40 E-value=2.8e-12 Score=129.64 Aligned_cols=146 Identities=14% Similarity=0.266 Sum_probs=99.9
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCC------------------------ceEEeeccccccccCCCcHHHHHHHHHHHHh
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGI------------------------EPVIMSAGELESERAGEPGKLIRERYRTASQ 110 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~------------------------~~i~vs~~eL~s~~~GEser~IR~~F~~A~~ 110 (321)
.++||||||||||++|+++|+.+++ .++.+++++ ..+-..+|++.+.+..
T Consensus 38 ~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el~aa~------~~gid~iR~i~~~~~~ 111 (472)
T PRK14962 38 AYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIELDAAS------NRGIDEIRKIRDAVGY 111 (472)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEEEeCcc------cCCHHHHHHHHHHHhh
Confidence 4799999999999999999999886 355555532 1224567877766653
Q ss_pred hhhhcCCceEEEeecccccCCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccccC
Q 020787 111 VVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPL 190 (321)
Q Consensus 111 ~~~~~gaPcILFIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpAL 190 (321)
.. ..+...||||||+|.+.. .....|+..+++| ...+.+|++||.|+.|+++|
T Consensus 112 ~p-~~~~~kVvIIDE~h~Lt~------------~a~~~LLk~LE~p--------------~~~vv~Ilattn~~kl~~~L 164 (472)
T PRK14962 112 RP-MEGKYKVYIIDEVHMLTK------------EAFNALLKTLEEP--------------PSHVVFVLATTNLEKVPPTI 164 (472)
T ss_pred Ch-hcCCeEEEEEEChHHhHH------------HHHHHHHHHHHhC--------------CCcEEEEEEeCChHhhhHHH
Confidence 21 135668999999998732 1123466666643 23566677777789999999
Q ss_pred CCCCCCcceec-CCCHHHHHHHHHHHhhcCC--CCHHHHHHhhhCCCC
Q 020787 191 IRDGRMEKFYW-QPNLEDILNIVHRMYEKDG--ITKDEVGSIVKTFPN 235 (321)
Q Consensus 191 lRpGRfDr~i~-~Pd~~~R~~Il~~~~~~~~--l~~~dl~~L~d~f~g 235 (321)
+. |+...-+ .|+.++...+++...+..+ ++.+.+..|+....|
T Consensus 165 ~S--R~~vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s~G 210 (472)
T PRK14962 165 IS--RCQVIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRASG 210 (472)
T ss_pred hc--CcEEEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCC
Confidence 87 5543223 4788899999988776544 667777777765544
No 77
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.39 E-value=1.1e-12 Score=103.98 Aligned_cols=122 Identities=20% Similarity=0.200 Sum_probs=78.4
Q ss_pred HhccccCCCCcHHHHHHHHHHHc---CCceEEeeccccccccCCCcHHHH---HHHHHHHHhhhhhcCCceEEEeecccc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM---GIEPVIMSAGELESERAGEPGKLI---RERYRTASQVVQNQGKMSCLMINDIDA 128 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~---g~~~i~vs~~eL~s~~~GEser~I---R~~F~~A~~~~~~~gaPcILFIDEIDA 128 (321)
.++|+||||||||++++++++++ +.+++.++..+....+........ ...+..+. ...+++|+|||+|.
T Consensus 21 ~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~lilDe~~~ 95 (151)
T cd00009 21 NLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAE-----KAKPGVLFIDEIDS 95 (151)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhc-----cCCCeEEEEeChhh
Confidence 57899999999999999999999 999999999887765443322210 11111111 34799999999998
Q ss_pred cCCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCC--CccccCCCCCCCcceecCC
Q 020787 129 GLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFS--TIYAPLIRDGRMEKFYWQP 203 (321)
Q Consensus 129 g~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~--~LDpALlRpGRfDr~i~~P 203 (321)
..+. ....++..+.... .+. ....+++||++||... .+++.+.. |++..+.+|
T Consensus 96 ~~~~------------~~~~~~~~i~~~~------~~~--~~~~~~~ii~~~~~~~~~~~~~~~~~--r~~~~i~~~ 150 (151)
T cd00009 96 LSRG------------AQNALLRVLETLN------DLR--IDRENVRVIGATNRPLLGDLDRALYD--RLDIRIVIP 150 (151)
T ss_pred hhHH------------HHHHHHHHHHhcC------cee--ccCCCeEEEEecCccccCCcChhHHh--hhccEeecC
Confidence 7211 1122333322100 000 0135799999999888 56666654 888666554
No 78
>PLN03025 replication factor C subunit; Provisional
Probab=99.37 E-value=5e-12 Score=120.25 Aligned_cols=146 Identities=16% Similarity=0.199 Sum_probs=98.3
Q ss_pred hccccCCCCcHHHHHHHHHHHcC-----CceEEeeccccccccCCCcHHHHHHHHHHHHhhh--hhcCCceEEEeecccc
Q 020787 56 LCIWGGKGQGKSFQTELIFQAMG-----IEPVIMSAGELESERAGEPGKLIRERYRTASQVV--QNQGKMSCLMINDIDA 128 (321)
Q Consensus 56 LgL~GPPGcGKTllaravA~e~g-----~~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~--~~~gaPcILFIDEIDA 128 (321)
|+||||||||||++|+++|+++- ..++.+++++..+ -..+|+..+...+.. ...+.+.|++|||+|.
T Consensus 37 lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~~~------~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~ 110 (319)
T PLN03025 37 LILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDDRG------IDVVRNKIKMFAQKKVTLPPGRHKIVILDEADS 110 (319)
T ss_pred EEEECCCCCCHHHHHHHHHHHHhcccCccceeeeccccccc------HHHHHHHHHHHHhccccCCCCCeEEEEEechhh
Confidence 68999999999999999999973 3466676665432 224555544322210 0024678999999999
Q ss_pred cCCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccccCCCCCCCcceec-CCCHHH
Q 020787 129 GLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYW-QPNLED 207 (321)
Q Consensus 129 g~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpALlRpGRfDr~i~-~Pd~~~ 207 (321)
..+. .| ..|+..+..+ ...+.+|.+||.++.+.++|+- |...+-+ .|+.++
T Consensus 111 lt~~---------aq---~aL~~~lE~~--------------~~~t~~il~~n~~~~i~~~L~S--Rc~~i~f~~l~~~~ 162 (319)
T PLN03025 111 MTSG---------AQ---QALRRTMEIY--------------SNTTRFALACNTSSKIIEPIQS--RCAIVRFSRLSDQE 162 (319)
T ss_pred cCHH---------HH---HHHHHHHhcc--------------cCCceEEEEeCCccccchhHHH--hhhcccCCCCCHHH
Confidence 7421 12 2344444421 2345678889999999999886 4433222 378899
Q ss_pred HHHHHHHHhhcCC--CCHHHHHHhhhCCCC
Q 020787 208 ILNIVHRMYEKDG--ITKDEVGSIVKTFPN 235 (321)
Q Consensus 208 R~~Il~~~~~~~~--l~~~dl~~L~d~f~g 235 (321)
...+|+.+.+..+ ++.+.+..++....|
T Consensus 163 l~~~L~~i~~~egi~i~~~~l~~i~~~~~g 192 (319)
T PLN03025 163 ILGRLMKVVEAEKVPYVPEGLEAIIFTADG 192 (319)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 9999998888765 568888888887665
No 79
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.37 E-value=4.7e-12 Score=126.04 Aligned_cols=122 Identities=26% Similarity=0.351 Sum_probs=88.6
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeeccccccccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeecccccCCCCC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG 134 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~~r~~ 134 (321)
.+.||||||||||++|+++|...+++|..+|+- . .+-|-||++|++|++... .|+-.|||||||.. +.
T Consensus 50 SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv--~-----~gvkdlr~i~e~a~~~~~-~gr~tiLflDEIHR----fn 117 (436)
T COG2256 50 SMILWGPPGTGKTTLARLIAGTTNAAFEALSAV--T-----SGVKDLREIIEEARKNRL-LGRRTILFLDEIHR----FN 117 (436)
T ss_pred eeEEECCCCCCHHHHHHHHHHhhCCceEEeccc--c-----ccHHHHHHHHHHHHHHHh-cCCceEEEEehhhh----cC
Confidence 788999999999999999999999999999986 2 236789999999987753 47789999999975 43
Q ss_pred CCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEe-e-CCCCCccccCCCCCCCcceecCC-CHHHHHHH
Q 020787 135 NTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFT-G-NDFSTIYAPLIRDGRMEKFYWQP-NLEDILNI 211 (321)
Q Consensus 135 ~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaa-T-Nrp~~LDpALlRpGRfDr~i~~P-d~~~R~~I 211 (321)
-+| |. .||-.+. ...+..|+| | |-.-.|.|||+=.-| -+..-| +.++-..+
T Consensus 118 K~Q-----QD---~lLp~vE----------------~G~iilIGATTENPsF~ln~ALlSR~~--vf~lk~L~~~di~~~ 171 (436)
T COG2256 118 KAQ-----QD---ALLPHVE----------------NGTIILIGATTENPSFELNPALLSRAR--VFELKPLSSEDIKKL 171 (436)
T ss_pred hhh-----hh---hhhhhhc----------------CCeEEEEeccCCCCCeeecHHHhhhhh--eeeeecCCHHHHHHH
Confidence 233 22 3443332 234666664 3 555688999887333 233336 77777777
Q ss_pred HHH
Q 020787 212 VHR 214 (321)
Q Consensus 212 l~~ 214 (321)
|+.
T Consensus 172 l~r 174 (436)
T COG2256 172 LKR 174 (436)
T ss_pred HHH
Confidence 765
No 80
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=1.9e-12 Score=135.78 Aligned_cols=144 Identities=25% Similarity=0.358 Sum_probs=100.2
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeecccccc---------ccCCC-cHHHHHHHHHHHHhhhhhcCCceEEEee
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELES---------ERAGE-PGKLIRERYRTASQVVQNQGKMSCLMIN 124 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s---------~~~GE-ser~IR~~F~~A~~~~~~~gaPcILFID 124 (321)
||+++||||.|||++++.||..+|-.|++.|-|-+-+ -|+|- |.|+|. -.... +-.--+++||
T Consensus 440 IlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGHRRTYVGAMPGkiIq-~LK~v------~t~NPliLiD 512 (906)
T KOG2004|consen 440 ILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQ-CLKKV------KTENPLILID 512 (906)
T ss_pred EEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcccceeeeccCChHHHH-HHHhh------CCCCceEEee
Confidence 9999999999999999999999999999999876654 37776 566654 33322 2233466789
Q ss_pred cccccCCCCCCCccchhhHHHHHHHHhhcCCCCccc-cCcccc-ccCCCCCccEEEeeCCCCCccccCCCCCCCcceecC
Q 020787 125 DIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVS-IGQDWR-ESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQ 202 (321)
Q Consensus 125 EIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~vq-l~g~~~-~~~~~~~V~VIaaTNrp~~LDpALlRpGRfDr~i~~ 202 (321)
|||.+.. +. +++ -.+.||++||-..|-. +|...+ +.| .++|..|+|+|..++|+|||+= ||+- |.+
T Consensus 513 EvDKlG~--g~-qGD-----PasALLElLDPEQNanFlDHYLdVp~D-LSkVLFicTAN~idtIP~pLlD--RMEv-Iel 580 (906)
T KOG2004|consen 513 EVDKLGS--GH-QGD-----PASALLELLDPEQNANFLDHYLDVPVD-LSKVLFICTANVIDTIPPPLLD--RMEV-IEL 580 (906)
T ss_pred hhhhhCC--CC-CCC-----hHHHHHHhcChhhccchhhhccccccc-hhheEEEEeccccccCChhhhh--hhhe-eec
Confidence 9999762 21 111 2346889988211111 111100 112 5689999999999999999986 7764 555
Q ss_pred C--CHHHHHHHHHHHhh
Q 020787 203 P--NLEDILNIVHRMYE 217 (321)
Q Consensus 203 P--d~~~R~~Il~~~~~ 217 (321)
| ..++..+|.+.++-
T Consensus 581 sGYv~eEKv~IA~~yLi 597 (906)
T KOG2004|consen 581 SGYVAEEKVKIAERYLI 597 (906)
T ss_pred cCccHHHHHHHHHHhhh
Confidence 5 67899999987753
No 81
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.36 E-value=1.3e-12 Score=138.73 Aligned_cols=142 Identities=20% Similarity=0.293 Sum_probs=93.0
Q ss_pred hHhccccCCCCcHHHHHHHHHHHcCCceEEeecccccc-----ccCCCcHHHH----HHHHHHHHhhhhhcCCceEEEee
Q 020787 54 ASLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELES-----ERAGEPGKLI----RERYRTASQVVQNQGKMSCLMIN 124 (321)
Q Consensus 54 ~iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s-----~~~GEser~I----R~~F~~A~~~~~~~gaPcILFID 124 (321)
-.++|+||||||||.+|+++|+.++.+|+.++.++..+ +..|.|..-+ ...+.+|.. +...||||||
T Consensus 489 ~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG~~~gyvg~~~~g~L~~~v~----~~p~sVlllD 564 (758)
T PRK11034 489 GSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVI----KHPHAVLLLD 564 (758)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHcCCCCCcccccccchHHHHHH----hCCCcEEEec
Confidence 36899999999999999999999999999999888643 3344331110 112333321 1245999999
Q ss_pred cccccCCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCC---------------------
Q 020787 125 DIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDF--------------------- 183 (321)
Q Consensus 125 EIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp--------------------- 183 (321)
|||...+ .|...|++++|+-....-.| ...+ .+++.||+|||.-
T Consensus 565 Eieka~~------------~v~~~LLq~ld~G~ltd~~g--~~vd-~rn~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~ 629 (758)
T PRK11034 565 EIEKAHP------------DVFNLLLQVMDNGTLTDNNG--RKAD-FRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAM 629 (758)
T ss_pred cHhhhhH------------HHHHHHHHHHhcCeeecCCC--ceec-CCCcEEEEeCCcCHHHHhhcccCcccchhhHHHH
Confidence 9999742 36678888888532211111 1112 3578899999932
Q ss_pred ----CCccccCCCCCCCcceecC-C-CHHHHHHHHHHHh
Q 020787 184 ----STIYAPLIRDGRMEKFYWQ-P-NLEDILNIVHRMY 216 (321)
Q Consensus 184 ----~~LDpALlRpGRfDr~i~~-P-d~~~R~~Il~~~~ 216 (321)
..+.|+++. |+|..+.. | +.++...|+..++
T Consensus 630 ~~~~~~f~pefl~--Rid~ii~f~~L~~~~l~~I~~~~l 666 (758)
T PRK11034 630 EEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFI 666 (758)
T ss_pred HHHHHhcCHHHHc--cCCEEEEcCCCCHHHHHHHHHHHH
Confidence 123355554 99986653 4 7788888886544
No 82
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.34 E-value=2.7e-12 Score=128.81 Aligned_cols=161 Identities=17% Similarity=0.200 Sum_probs=102.7
Q ss_pred HhccccCCCCcHHHHHHHHHHHc---CCceEEeeccccccccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeecccccCC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM---GIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLG 131 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~---g~~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~~ 131 (321)
-|.||||||||||.|++|+++++ +..++.+++.++...+...-...--+.|+... ..+.+|+||||+.+.+
T Consensus 143 pl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~------~~~dvLiIDDiq~l~~ 216 (445)
T PRK12422 143 PIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSGEMQRFRQFY------RNVDALFIEDIEVFSG 216 (445)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcchHHHHHHHc------ccCCEEEEcchhhhcC
Confidence 47899999999999999999876 78889999877665332110000012333321 2578999999999765
Q ss_pred CCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCC----CCccccCCCCCCCcc--eec--CC
Q 020787 132 RFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDF----STIYAPLIRDGRMEK--FYW--QP 203 (321)
Q Consensus 132 r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp----~~LDpALlRpGRfDr--~i~--~P 203 (321)
+.. + .+.+. .++|.+- ..+.+||+|||++ ..+++.|+. ||.. .+. .|
T Consensus 217 k~~-~-----qeelf-~l~N~l~----------------~~~k~IIlts~~~p~~l~~l~~rL~S--R~~~Gl~~~l~~p 271 (445)
T PRK12422 217 KGA-T-----QEEFF-HTFNSLH----------------TEGKLIVISSTCAPQDLKAMEERLIS--RFEWGIAIPLHPL 271 (445)
T ss_pred Chh-h-----HHHHH-HHHHHHH----------------HCCCcEEEecCCCHHHHhhhHHHHHh--hhcCCeEEecCCC
Confidence 321 1 12222 2222111 1235788888875 356777777 8863 333 48
Q ss_pred CHHHHHHHHHHHhhcCC--CCHHHHHHhhhCCCCCcchhhHHHHH
Q 020787 204 NLEDILNIVHRMYEKDG--ITKDEVGSIVKTFPNQALDFYGALRS 246 (321)
Q Consensus 204 d~~~R~~Il~~~~~~~~--l~~~dl~~L~d~f~gq~idf~gAlra 246 (321)
+.++|..||+...+..+ ++.+-+.-|+..+++--=...|||..
T Consensus 272 d~e~r~~iL~~k~~~~~~~l~~evl~~la~~~~~dir~L~g~l~~ 316 (445)
T PRK12422 272 TKEGLRSFLERKAEALSIRIEETALDFLIEALSSNVKSLLHALTL 316 (445)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 99999999998777654 66777777888887643233444443
No 83
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=2.4e-12 Score=135.00 Aligned_cols=144 Identities=25% Similarity=0.325 Sum_probs=103.0
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeeccccccc---------cCCCcHHHHHHHHHHHHhhhhhcCCceEEEeec
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESE---------RAGEPGKLIRERYRTASQVVQNQGKMSCLMIND 125 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~---------~~GEser~IR~~F~~A~~~~~~~gaPcILFIDE 125 (321)
||+|.||||+|||+|++.+|+.+|-.|+++|-|-+-+. |+|-=+-.|=+--++|... .| ++++||
T Consensus 352 ILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHRRTYIGamPGrIiQ~mkka~~~-----NP-v~LLDE 425 (782)
T COG0466 352 ILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHRRTYIGAMPGKIIQGMKKAGVK-----NP-VFLLDE 425 (782)
T ss_pred EEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhccccccccccCChHHHHHHHHhCCc-----CC-eEEeec
Confidence 99999999999999999999999999999998766553 7887444444555666422 45 667899
Q ss_pred ccccCCCCCCCccchhhHHHHHHHHhhcCCCCccc-cCccccccCC-CCCccEEEeeCCCCCccccCCCCCCCcceecC-
Q 020787 126 IDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVS-IGQDWRESDI-TNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQ- 202 (321)
Q Consensus 126 IDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~vq-l~g~~~~~~~-~~~V~VIaaTNrp~~LDpALlRpGRfDr~i~~- 202 (321)
||.....+.+. -.+.||+.||=..|.. .|. |-+.+. .++|..|+|+|..++|++||+= ||+- |.+
T Consensus 426 IDKm~ss~rGD--------PaSALLEVLDPEQN~~F~Dh-YLev~yDLS~VmFiaTANsl~tIP~PLlD--RMEi-I~ls 493 (782)
T COG0466 426 IDKMGSSFRGD--------PASALLEVLDPEQNNTFSDH-YLEVPYDLSKVMFIATANSLDTIPAPLLD--RMEV-IRLS 493 (782)
T ss_pred hhhccCCCCCC--------hHHHHHhhcCHhhcCchhhc-cccCccchhheEEEeecCccccCChHHhc--ceee-eeec
Confidence 99976544322 2235888888211111 111 111111 5689999999999999999987 8875 334
Q ss_pred -CCHHHHHHHHHHHh
Q 020787 203 -PNLEDILNIVHRMY 216 (321)
Q Consensus 203 -Pd~~~R~~Il~~~~ 216 (321)
=+.++.++|-+.|+
T Consensus 494 gYt~~EKl~IAk~~L 508 (782)
T COG0466 494 GYTEDEKLEIAKRHL 508 (782)
T ss_pred CCChHHHHHHHHHhc
Confidence 37889999998664
No 84
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.33 E-value=8.3e-12 Score=132.11 Aligned_cols=169 Identities=18% Similarity=0.235 Sum_probs=112.8
Q ss_pred hhhHHHHHHhhhhhhccCccccch--hhh----h-----HhccccCCCCcHHHHHHHHHHHcCCceEEeeccccccccCC
Q 020787 27 IVFDYRQKVTRSFEYLQGDYYIAP--VFM----A-----SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAG 95 (321)
Q Consensus 27 i~~~~~~~~~~~~~~~~~~~~~~p--~f~----~-----iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~~~G 95 (321)
.+..|| .++|+.+.|.=++-- ..+ . .++||||||||||++|+++|+.++..|+.+++..
T Consensus 18 Laek~R---P~tldd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~------- 87 (725)
T PRK13341 18 LADRLR---PRTLEEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVL------- 87 (725)
T ss_pred hHHhcC---CCcHHHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhh-------
Confidence 345566 467776666544331 111 1 6789999999999999999999999999988752
Q ss_pred CcHHHHHHHHHHHHhhhhhcCCceEEEeecccccCCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCcc
Q 020787 96 EPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIP 175 (321)
Q Consensus 96 Eser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~ 175 (321)
.+.+.+|+.+..+.+.....++..+|||||||..... .+..|+..+. ...+.
T Consensus 88 ~~i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~------------qQdaLL~~lE----------------~g~Ii 139 (725)
T PRK13341 88 AGVKDLRAEVDRAKERLERHGKRTILFIDEVHRFNKA------------QQDALLPWVE----------------NGTIT 139 (725)
T ss_pred hhhHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHH------------HHHHHHHHhc----------------CceEE
Confidence 1235578888877554433457789999999986321 1223444433 12455
Q ss_pred EEEee--CCCCCccccCCCCCCCcceec-CCCHHHHHHHHHHHhh-------c--CCCCHHHHHHhhhCCCC
Q 020787 176 IIFTG--NDFSTIYAPLIRDGRMEKFYW-QPNLEDILNIVHRMYE-------K--DGITKDEVGSIVKTFPN 235 (321)
Q Consensus 176 VIaaT--Nrp~~LDpALlRpGRfDr~i~-~Pd~~~R~~Il~~~~~-------~--~~l~~~dl~~L~d~f~g 235 (321)
+|++| |....++++|+..++ .+.+ .++.+++..|++.++. . ..++.+.+..|+...+|
T Consensus 140 LI~aTTenp~~~l~~aL~SR~~--v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~G 209 (725)
T PRK13341 140 LIGATTENPYFEVNKALVSRSR--LFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANG 209 (725)
T ss_pred EEEecCCChHhhhhhHhhcccc--ceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCC
Confidence 66654 333568899886343 2222 3688999999987765 2 24678888888887766
No 85
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.33 E-value=9.5e-12 Score=123.32 Aligned_cols=151 Identities=18% Similarity=0.268 Sum_probs=96.8
Q ss_pred hHhccccCCCCcHHHHHHHHHHHcCCce----------------------EEeeccccccccCCCcHHHHHHHHHHHHhh
Q 020787 54 ASLCIWGGKGQGKSFQTELIFQAMGIEP----------------------VIMSAGELESERAGEPGKLIRERYRTASQV 111 (321)
Q Consensus 54 ~iLgL~GPPGcGKTllaravA~e~g~~~----------------------i~vs~~eL~s~~~GEser~IR~~F~~A~~~ 111 (321)
..++||||||||||++|+++|+.+.+.- +.+..++ .+.+| -..||++++.+...
T Consensus 37 ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~hpD~~~i~~~--~~~i~--i~~iR~l~~~~~~~ 112 (394)
T PRK07940 37 HAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTHPDVRVVAPE--GLSIG--VDEVRELVTIAARR 112 (394)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEeccc--cccCC--HHHHHHHHHHHHhC
Confidence 4789999999999999999999876642 1111111 11111 23489999888643
Q ss_pred hhhcCCceEEEeecccccCCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccccCC
Q 020787 112 VQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLI 191 (321)
Q Consensus 112 ~~~~gaPcILFIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpALl 191 (321)
. ..+..+|+||||+|..... -...|+..+..| .+++.+|.+||+++.|.|+++
T Consensus 113 p-~~~~~kViiIDead~m~~~------------aanaLLk~LEep--------------~~~~~fIL~a~~~~~llpTIr 165 (394)
T PRK07940 113 P-STGRWRIVVIEDADRLTER------------AANALLKAVEEP--------------PPRTVWLLCAPSPEDVLPTIR 165 (394)
T ss_pred c-ccCCcEEEEEechhhcCHH------------HHHHHHHHhhcC--------------CCCCeEEEEECChHHChHHHH
Confidence 2 2466789999999998421 123466666633 235666666666999999998
Q ss_pred CCCCCcceec-CCCHHHHHHHHHHHhhcCCCCHHH---HHHhhhCCCCCcchh
Q 020787 192 RDGRMEKFYW-QPNLEDILNIVHRMYEKDGITKDE---VGSIVKTFPNQALDF 240 (321)
Q Consensus 192 RpGRfDr~i~-~Pd~~~R~~Il~~~~~~~~l~~~d---l~~L~d~f~gq~idf 240 (321)
. |.=.+.+ .|+.++..++|.. ..+++.+. +..++++.+|..+.+
T Consensus 166 S--Rc~~i~f~~~~~~~i~~~L~~---~~~~~~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 166 S--RCRHVALRTPSVEAVAEVLVR---RDGVDPETARRAARASQGHIGRARRL 213 (394)
T ss_pred h--hCeEEECCCCCHHHHHHHHHH---hcCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 8 5533333 4788887777752 23566654 444555666655544
No 86
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.32 E-value=6.9e-13 Score=117.27 Aligned_cols=125 Identities=16% Similarity=0.174 Sum_probs=86.2
Q ss_pred hccccCCCCcHHHHHHHHHHHcCC----ceEEeeccccccccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeecccccCC
Q 020787 56 LCIWGGKGQGKSFQTELIFQAMGI----EPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLG 131 (321)
Q Consensus 56 LgL~GPPGcGKTllaravA~e~g~----~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~~ 131 (321)
++|.||+|||||.+|+++|+.+.. +++.++++++.. -++++..+..++-.+..... ....-||||||||...+
T Consensus 6 ~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~--~~~~~~~~~~l~~~~~~~v~-~~~~gVVllDEidKa~~ 82 (171)
T PF07724_consen 6 FLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSE--GDDVESSVSKLLGSPPGYVG-AEEGGVVLLDEIDKAHP 82 (171)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCS--HHHCSCHCHHHHHHTTCHHH-HHHHTEEEEETGGGCSH
T ss_pred EEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccc--cchHHhhhhhhhhcccceee-ccchhhhhhHHHhhccc
Confidence 679999999999999999999997 999999999987 23445555555544322221 11223999999999988
Q ss_pred CCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCcc
Q 020787 132 RFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIY 187 (321)
Q Consensus 132 r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LD 187 (321)
+ .....++....|...||.++|+-+ ++.. .-...+ .+++.+|+|||=-....
T Consensus 83 ~-~~~~~~v~~~~V~~~LL~~le~g~-~~d~-~g~~vd-~~n~ifI~Tsn~~~~~~ 134 (171)
T PF07724_consen 83 S-NSGGADVSGEGVQNSLLQLLEGGT-LTDS-YGRTVD-TSNIIFIMTSNFGAEEI 134 (171)
T ss_dssp T-TTTCSHHHHHHHHHHHHHHHHHSE-EEET-TCCEEE-GTTEEEEEEESSSTHHH
T ss_pred c-ccccchhhHHHHHHHHHHHhcccc-eecc-cceEEE-eCCceEEEecccccchh
Confidence 7 434456777788999999998532 2211 101222 56899999999544433
No 87
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.32 E-value=1.1e-11 Score=125.98 Aligned_cols=166 Identities=16% Similarity=0.253 Sum_probs=106.3
Q ss_pred HHHHHhhhhhhccCccccchhhhh---------HhccccCCCCcHHHHHHHHHHHcCCc---------------------
Q 020787 31 YRQKVTRSFEYLQGDYYIAPVFMA---------SLCIWGGKGQGKSFQTELIFQAMGIE--------------------- 80 (321)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~p~f~~---------iLgL~GPPGcGKTllaravA~e~g~~--------------------- 80 (321)
||.+--++|+.+.|--++--.+.. .++||||||||||++|+++|+.+++.
T Consensus 9 ~~KyRP~~f~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~~g~ 88 (484)
T PRK14956 9 SRKYRPQFFRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEITKGI 88 (484)
T ss_pred HHHhCCCCHHHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHHHccC
Confidence 344445677777766555444333 47999999999999999999999873
Q ss_pred ---eEEeeccccccccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeecccccCCCCCCCccchhhHHHHHHHHhhcCCCC
Q 020787 81 ---PVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPT 157 (321)
Q Consensus 81 ---~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~ 157 (321)
++.++++. ..+-..||++.+.+.... ..++..|+||||+|.+.. . ....||..+..|
T Consensus 89 ~~dviEIdaas------~~gVd~IReL~e~l~~~p-~~g~~KV~IIDEah~Ls~-----------~-A~NALLKtLEEP- 148 (484)
T PRK14956 89 SSDVLEIDAAS------NRGIENIRELRDNVKFAP-MGGKYKVYIIDEVHMLTD-----------Q-SFNALLKTLEEP- 148 (484)
T ss_pred Cccceeechhh------cccHHHHHHHHHHHHhhh-hcCCCEEEEEechhhcCH-----------H-HHHHHHHHhhcC-
Confidence 23333221 112446777766664322 245778999999998742 1 223455554422
Q ss_pred ccccCccccccCCCCCccEEEeeCCCCCccccCCCCCCCcceecC-CCHHHHHHHHHHHhhcCCC--CHHHHHHhhh
Q 020787 158 RVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQ-PNLEDILNIVHRMYEKDGI--TKDEVGSIVK 231 (321)
Q Consensus 158 ~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpALlRpGRfDr~i~~-Pd~~~R~~Il~~~~~~~~l--~~~dl~~L~d 231 (321)
..++.+|.|||.++.|.++++. |.-++.+. ++.++-.+.|+.++...++ +.+.+..++.
T Consensus 149 -------------p~~viFILaTte~~kI~~TI~S--RCq~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~ 210 (484)
T PRK14956 149 -------------PAHIVFILATTEFHKIPETILS--RCQDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAK 210 (484)
T ss_pred -------------CCceEEEeecCChhhccHHHHh--hhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 3478888888999999999888 76655553 5666666677666665543 4444444444
No 88
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.31 E-value=3.1e-12 Score=127.83 Aligned_cols=151 Identities=17% Similarity=0.315 Sum_probs=96.1
Q ss_pred HhccccCCCCcHHHHHHHHHHHc-----CCceEEeeccccccccCCCc-HHHHHHHHHHHHhhhhhcCCceEEEeecccc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM-----GIEPVIMSAGELESERAGEP-GKLIRERYRTASQVVQNQGKMSCLMINDIDA 128 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~-----g~~~i~vs~~eL~s~~~GEs-er~IR~~F~~A~~~~~~~gaPcILFIDEIDA 128 (321)
-|.||||||||||.|+.|+|+++ +..++.+++.++.+.+...- ...+ +-|++.. +..|.+|+|||+|.
T Consensus 132 ~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~~~~~~-~~f~~~~-----~~~~dvLlIDDi~~ 205 (440)
T PRK14088 132 PLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKL-NEFREKY-----RKKVDVLLIDDVQF 205 (440)
T ss_pred eEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHhcccH-HHHHHHH-----HhcCCEEEEechhh
Confidence 48999999999999999999986 56788888888765542110 0011 1122211 12689999999999
Q ss_pred cCCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEee-CCCCC---ccccCCCCCCCcc--e--e
Q 020787 129 GLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTG-NDFST---IYAPLIRDGRMEK--F--Y 200 (321)
Q Consensus 129 g~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaT-Nrp~~---LDpALlRpGRfDr--~--i 200 (321)
+.++.+ + ...+..++-.+.+ .+..||+|+ +.|+. +++.|+- ||.. . +
T Consensus 206 l~~~~~-~-----q~elf~~~n~l~~-----------------~~k~iIitsd~~p~~l~~l~~rL~S--R~~~gl~v~i 260 (440)
T PRK14088 206 LIGKTG-V-----QTELFHTFNELHD-----------------SGKQIVICSDREPQKLSEFQDRLVS--RFQMGLVAKL 260 (440)
T ss_pred hcCcHH-H-----HHHHHHHHHHHHH-----------------cCCeEEEECCCCHHHHHHHHHHHhh--HHhcCceEee
Confidence 876421 1 1122222211111 133566666 45554 3444554 6653 2 2
Q ss_pred cCCCHHHHHHHHHHHhhcC--CCCHHHHHHhhhCCCCC
Q 020787 201 WQPNLEDILNIVHRMYEKD--GITKDEVGSIVKTFPNQ 236 (321)
Q Consensus 201 ~~Pd~~~R~~Il~~~~~~~--~l~~~dl~~L~d~f~gq 236 (321)
..|+.+.|.+||+.+.+.. .++.+-+..|++.++|.
T Consensus 261 ~~pd~e~r~~IL~~~~~~~~~~l~~ev~~~Ia~~~~~~ 298 (440)
T PRK14088 261 EPPDEETRKKIARKMLEIEHGELPEEVLNFVAENVDDN 298 (440)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHhccccC
Confidence 3499999999999887754 46788889999988874
No 89
>PRK08727 hypothetical protein; Validated
Probab=99.30 E-value=1.3e-11 Score=113.16 Aligned_cols=141 Identities=11% Similarity=0.177 Sum_probs=93.2
Q ss_pred HhccccCCCCcHHHHHHHHHHH---cCCceEEeeccccccccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeecccccCC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQA---MGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLG 131 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e---~g~~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~~ 131 (321)
-+.||||+|||||.++.|++.+ .|...+.++..++.. .+.+.++... +..+|+|||||...+
T Consensus 43 ~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~~--------~~~~~~~~l~-------~~dlLiIDDi~~l~~ 107 (233)
T PRK08727 43 WLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAAG--------RLRDALEALE-------GRSLVALDGLESIAG 107 (233)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhhh--------hHHHHHHHHh-------cCCEEEEeCcccccC
Confidence 3899999999999999999655 466666676655432 2333333222 567999999998765
Q ss_pred CCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCC-CCCc---cccCCCCCCCcc--eec--CC
Q 020787 132 RFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGND-FSTI---YAPLIRDGRMEK--FYW--QP 203 (321)
Q Consensus 132 r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNr-p~~L---DpALlRpGRfDr--~i~--~P 203 (321)
... .+. .|.++++.. . ..+.+||+|+|. |+.+ +|.|+. ||.. .+. .|
T Consensus 108 ~~~-------~~~---~lf~l~n~~-----------~--~~~~~vI~ts~~~p~~l~~~~~dL~S--Rl~~~~~~~l~~~ 162 (233)
T PRK08727 108 QRE-------DEV---ALFDFHNRA-----------R--AAGITLLYTARQMPDGLALVLPDLRS--RLAQCIRIGLPVL 162 (233)
T ss_pred ChH-------HHH---HHHHHHHHH-----------H--HcCCeEEEECCCChhhhhhhhHHHHH--HHhcCceEEecCC
Confidence 321 121 233333310 0 135678887774 4444 678876 6643 232 48
Q ss_pred CHHHHHHHHHHHhhc--CCCCHHHHHHhhhCCCC
Q 020787 204 NLEDILNIVHRMYEK--DGITKDEVGSIVKTFPN 235 (321)
Q Consensus 204 d~~~R~~Il~~~~~~--~~l~~~dl~~L~d~f~g 235 (321)
+.++|.+||+.+.+. ..++.+.+..|+..++|
T Consensus 163 ~~e~~~~iL~~~a~~~~l~l~~e~~~~La~~~~r 196 (233)
T PRK08727 163 DDVARAAVLRERAQRRGLALDEAAIDWLLTHGER 196 (233)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC
Confidence 999999999976654 45788999999998886
No 90
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.30 E-value=8.4e-12 Score=121.48 Aligned_cols=145 Identities=17% Similarity=0.141 Sum_probs=92.6
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeeccccccc--cCCCcHHHHH----------HHHHHHHhhhhhcCCceEEE
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESE--RAGEPGKLIR----------ERYRTASQVVQNQGKMSCLM 122 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~--~~GEser~IR----------~~F~~A~~~~~~~gaPcILF 122 (321)
-++|.||||||||++|+.+|++++.+++.|+..+-.+. ++|...-.++ ..+-.|.+ .+++|+
T Consensus 66 ~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~------~g~ill 139 (327)
T TIGR01650 66 RVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQ------HNVALC 139 (327)
T ss_pred cEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHh------CCeEEE
Confidence 58899999999999999999999999999998777776 5665321111 12334432 689999
Q ss_pred eecccccCCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccccCCCCC-------C
Q 020787 123 INDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDG-------R 195 (321)
Q Consensus 123 IDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpALlRpG-------R 195 (321)
+||||+.-+. +...|..+++....+.+++.-......+...||+|+|..+.-|..=+=-| =
T Consensus 140 lDEin~a~p~------------~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~ 207 (327)
T TIGR01650 140 FDEYDAGRPD------------VMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQ 207 (327)
T ss_pred echhhccCHH------------HHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHH
Confidence 9999997442 23344455553222333321111111235668999998875554322111 2
Q ss_pred Cccee---cC--CCHHHHHHHHHHHhh
Q 020787 196 MEKFY---WQ--PNLEDILNIVHRMYE 217 (321)
Q Consensus 196 fDr~i---~~--Pd~~~R~~Il~~~~~ 217 (321)
+||+. .+ |+.++=.+||.....
T Consensus 208 lDRF~i~~~~~Yp~~e~E~~Il~~~~~ 234 (327)
T TIGR01650 208 MDRWSIVTTLNYLEHDNEAAIVLAKAK 234 (327)
T ss_pred HhheeeEeeCCCCCHHHHHHHHHhhcc
Confidence 45653 23 888888889876543
No 91
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.29 E-value=1.4e-11 Score=129.73 Aligned_cols=139 Identities=19% Similarity=0.286 Sum_probs=92.9
Q ss_pred hHhccccCCCCcHHHHHHHHHHHcCCceEEeeccccccc------------cCCCcH-HHHHHHHHHHHhhhhhcCCceE
Q 020787 54 ASLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESE------------RAGEPG-KLIRERYRTASQVVQNQGKMSC 120 (321)
Q Consensus 54 ~iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~------------~~GEse-r~IR~~F~~A~~~~~~~gaPcI 120 (321)
-.++++||||||||.+|+++|+.++.+++.++.+|..++ |+|-.+ ..+. +|.. +...||
T Consensus 485 ~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~lig~~~gyvg~~~~~~l~----~~~~----~~p~~V 556 (731)
T TIGR02639 485 GSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVSRLIGAPPGYVGFEQGGLLT----EAVR----KHPHCV 556 (731)
T ss_pred eeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHHHhcCCCCCcccchhhHHH----HHHH----hCCCeE
Confidence 357899999999999999999999999999999886542 333221 2222 2321 225789
Q ss_pred EEeecccccCCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCC---------------
Q 020787 121 LMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFST--------------- 185 (321)
Q Consensus 121 LFIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~--------------- 185 (321)
|||||||...+ .+...|+.++|+-... ++.....+ .+++.||+|||....
T Consensus 557 vllDEieka~~------------~~~~~Ll~~ld~g~~~--d~~g~~vd-~~~~iii~Tsn~g~~~~~~~~~~f~~~~~~ 621 (731)
T TIGR02639 557 LLLDEIEKAHP------------DIYNILLQVMDYATLT--DNNGRKAD-FRNVILIMTSNAGASEMSKPPIGFGSENVE 621 (731)
T ss_pred EEEechhhcCH------------HHHHHHHHhhccCeee--cCCCcccC-CCCCEEEECCCcchhhhhhccCCcchhhhH
Confidence 99999997632 3666889999853211 11111112 346889999987531
Q ss_pred ----------ccccCCCCCCCcceec-CC-CHHHHHHHHHHHhh
Q 020787 186 ----------IYAPLIRDGRMEKFYW-QP-NLEDILNIVHRMYE 217 (321)
Q Consensus 186 ----------LDpALlRpGRfDr~i~-~P-d~~~R~~Il~~~~~ 217 (321)
+.|+++ +|||..|. .| +.++...|++..+.
T Consensus 622 ~~~~~~~~~~f~pef~--~Rid~Vi~F~pLs~e~l~~Iv~~~L~ 663 (731)
T TIGR02639 622 SKSDKAIKKLFSPEFR--NRLDAIIHFNPLSEEVLEKIVQKFVD 663 (731)
T ss_pred HHHHHHHHhhcChHHH--hcCCeEEEcCCCCHHHHHHHHHHHHH
Confidence 344454 59997664 45 78888888876554
No 92
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.29 E-value=1.8e-11 Score=131.58 Aligned_cols=151 Identities=17% Similarity=0.219 Sum_probs=98.5
Q ss_pred HhccccCCCCcHHHHHHHHHHHc----------CCceEEeecccccccc-----------------CCCcHHHHHHHHHH
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM----------GIEPVIMSAGELESER-----------------AGEPGKLIRERYRT 107 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~----------g~~~i~vs~~eL~s~~-----------------~GEser~IR~~F~~ 107 (321)
+|.||||||||||..++.|..++ .+.++.|++..+...+ .+.+.+.+..+|..
T Consensus 783 vLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~ 862 (1164)
T PTZ00112 783 ILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQ 862 (1164)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhh
Confidence 46799999999999999998776 2567888885433322 11234566777766
Q ss_pred HHhhhhhcCCceEEEeecccccCCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCC---CC
Q 020787 108 ASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGND---FS 184 (321)
Q Consensus 108 A~~~~~~~gaPcILFIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNr---p~ 184 (321)
..+. ...++||+|||||.+..+ .|.+ |.++++ |.... ..++.||+++|. ++
T Consensus 863 L~k~---~r~v~IIILDEID~L~kK---------~QDV---LYnLFR----------~~~~s-~SKLiLIGISNdlDLpe 916 (1164)
T PTZ00112 863 NKKD---NRNVSILIIDEIDYLITK---------TQKV---LFTLFD----------WPTKI-NSKLVLIAISNTMDLPE 916 (1164)
T ss_pred hhcc---cccceEEEeehHhhhCcc---------HHHH---HHHHHH----------Hhhcc-CCeEEEEEecCchhcch
Confidence 5322 346889999999998753 1233 444544 11111 347888999987 66
Q ss_pred CccccCCCCCCCcceecC-CCHHHHHHHHHHHhhcC--CCCHHHHHHhhh
Q 020787 185 TIYAPLIRDGRMEKFYWQ-PNLEDILNIVHRMYEKD--GITKDEVGSIVK 231 (321)
Q Consensus 185 ~LDpALlRpGRfDr~i~~-Pd~~~R~~Il~~~~~~~--~l~~~dl~~L~d 231 (321)
.|+|.|.-.....+..+. ++.++..+||+...... -++.+.+.-+++
T Consensus 917 rLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIAr 966 (1164)
T PTZ00112 917 RLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCAR 966 (1164)
T ss_pred hhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Confidence 777877653344445554 59999999998666532 255555544443
No 93
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.27 E-value=1.2e-11 Score=125.00 Aligned_cols=139 Identities=19% Similarity=0.218 Sum_probs=84.9
Q ss_pred cCccccchhhhh----------HhccccCCCCcHHHHHHHHHHHcCCc-------eEEee----cccccccc--CCCcHH
Q 020787 43 QGDYYIAPVFMA----------SLCIWGGKGQGKSFQTELIFQAMGIE-------PVIMS----AGELESER--AGEPGK 99 (321)
Q Consensus 43 ~~~~~~~p~f~~----------iLgL~GPPGcGKTllaravA~e~g~~-------~i~vs----~~eL~s~~--~GEser 99 (321)
..+.++|+.-++ -+.|+||||||||++|+++|..+... ++.++ ..+++.++ .|.+-+
T Consensus 174 l~d~~i~e~~le~l~~~L~~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~~vgy~ 253 (459)
T PRK11331 174 LNDLFIPETTIETILKRLTIKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPNGVGFR 253 (459)
T ss_pred hhcccCCHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCCCCCeE
Confidence 345667766665 56789999999999999999998642 22222 23455444 122222
Q ss_pred ----HHHHHHHHHHhhhhhcCCceEEEeecccccCCCCCCCccchhhHHHHHHHHhhcCCCCc---cccCccccc-----
Q 020787 100 ----LIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTR---VSIGQDWRE----- 167 (321)
Q Consensus 100 ----~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~---vql~g~~~~----- 167 (321)
.+.+..+.|.+. ...|++|||||||.+-. ..+.+.|+++++.-.+ +.++-.+..
T Consensus 254 ~~~G~f~~~~~~A~~~---p~~~~vliIDEINRani-----------~kiFGel~~lLE~~~rg~~~~v~l~y~e~d~e~ 319 (459)
T PRK11331 254 RKDGIFYNFCQQAKEQ---PEKKYVFIIDEINRANL-----------SKVFGEVMMLMEHDKRGENWSVPLTYSENDEER 319 (459)
T ss_pred ecCchHHHHHHHHHhc---ccCCcEEEEehhhccCH-----------HHhhhhhhhhccccccccccceeeecccccccc
Confidence 222334445432 34799999999998632 2355566666652110 011100111
Q ss_pred cCCCCCccEEEeeCCCC----CccccCCCCCCCc
Q 020787 168 SDITNRIPIIFTGNDFS----TIYAPLIRDGRME 197 (321)
Q Consensus 168 ~~~~~~V~VIaaTNrp~----~LDpALlRpGRfD 197 (321)
...-.++.||+|.|..| .||+||+| ||.
T Consensus 320 f~iP~Nl~IIgTMNt~Drs~~~lD~AlrR--RF~ 351 (459)
T PRK11331 320 FYVPENVYIIGLMNTADRSLAVVDYALRR--RFS 351 (459)
T ss_pred ccCCCCeEEEEecCccccchhhccHHHHh--hhh
Confidence 12245899999999998 89999999 884
No 94
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.27 E-value=2e-11 Score=112.05 Aligned_cols=143 Identities=15% Similarity=0.157 Sum_probs=87.2
Q ss_pred HhccccCCCCcHHHHHHHHHHHcC---CceEEeeccccccccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeecccccCC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMG---IEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLG 131 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g---~~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~~ 131 (321)
.+.||||||||||.|++++|+++. .....++..+..+. ...+++.|+ +-.+|+||||+...+
T Consensus 47 ~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~~-----~~~~~~~~~----------~~dlliiDdi~~~~~ 111 (235)
T PRK08084 47 YIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAWF-----VPEVLEGME----------QLSLVCIDNIECIAG 111 (235)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhhh-----hHHHHHHhh----------hCCEEEEeChhhhcC
Confidence 478999999999999999998765 23444444332211 111122221 236899999999764
Q ss_pred CCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCC-CC---ccccCCCCCCCcc--ee--cCC
Q 020787 132 RFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDF-ST---IYAPLIRDGRMEK--FY--WQP 203 (321)
Q Consensus 132 r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp-~~---LDpALlRpGRfDr--~i--~~P 203 (321)
+.. ..+.+. .+++.+- + ..+..+|+|||.| .. +.|.|+- |+.- .+ ..|
T Consensus 112 ~~~------~~~~lf-~l~n~~~--------------e-~g~~~li~ts~~~p~~l~~~~~~L~S--Rl~~g~~~~l~~~ 167 (235)
T PRK08084 112 DEL------WEMAIF-DLYNRIL--------------E-SGRTRLLITGDRPPRQLNLGLPDLAS--RLDWGQIYKLQPL 167 (235)
T ss_pred CHH------HHHHHH-HHHHHHH--------------H-cCCCeEEEeCCCChHHcCcccHHHHH--HHhCCceeeecCC
Confidence 311 012222 2222211 0 2245577766554 44 4677776 7753 22 348
Q ss_pred CHHHHHHHHHHHhhcC--CCCHHHHHHhhhCCCCC
Q 020787 204 NLEDILNIVHRMYEKD--GITKDEVGSIVKTFPNQ 236 (321)
Q Consensus 204 d~~~R~~Il~~~~~~~--~l~~~dl~~L~d~f~gq 236 (321)
+.++|.+||+...... .++++-+..|+..++|.
T Consensus 168 ~~~~~~~~l~~~a~~~~~~l~~~v~~~L~~~~~~d 202 (235)
T PRK08084 168 SDEEKLQALQLRARLRGFELPEDVGRFLLKRLDRE 202 (235)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhhcCC
Confidence 9999999998766554 57788889999888874
No 95
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.26 E-value=4.4e-11 Score=115.19 Aligned_cols=152 Identities=14% Similarity=0.188 Sum_probs=98.8
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeec-------cccccccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeeccc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSA-------GELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDID 127 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~-------~eL~s~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDEID 127 (321)
.++||||||+|||++|+++|+.+.+....... -++ +.........+|+++++|.... ..+.+.|+||||+|
T Consensus 41 ~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~i~~l~~~~~~~p-~~~~~kiviIDE~~ 118 (367)
T PRK14970 41 ALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFEL-DAASNNSVDDIRNLIDQVRIPP-QTGKYKIYIIDEVH 118 (367)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEe-ccccCCCHHHHHHHHHHHhhcc-ccCCcEEEEEeChh
Confidence 67899999999999999999998763211110 011 1111233468888888875321 13467899999999
Q ss_pred ccCCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccccCCCCCCCcceecCCCHHH
Q 020787 128 AGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLED 207 (321)
Q Consensus 128 Ag~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpALlRpGRfDr~i~~Pd~~~ 207 (321)
...+ +. ...|+..+++| .....+|++||.++.+.+++...++. -.+..|+.++
T Consensus 119 ~l~~-----------~~-~~~ll~~le~~--------------~~~~~~Il~~~~~~kl~~~l~sr~~~-v~~~~~~~~~ 171 (367)
T PRK14970 119 MLSS-----------AA-FNAFLKTLEEP--------------PAHAIFILATTEKHKIIPTILSRCQI-FDFKRITIKD 171 (367)
T ss_pred hcCH-----------HH-HHHHHHHHhCC--------------CCceEEEEEeCCcccCCHHHHhccee-EecCCccHHH
Confidence 6532 11 23455555533 23455667788889999998764431 1122478888
Q ss_pred HHHHHHHHhhcCC--CCHHHHHHhhhCCCC
Q 020787 208 ILNIVHRMYEKDG--ITKDEVGSIVKTFPN 235 (321)
Q Consensus 208 R~~Il~~~~~~~~--l~~~dl~~L~d~f~g 235 (321)
...+++...+..+ ++.+.+..|+....|
T Consensus 172 l~~~l~~~~~~~g~~i~~~al~~l~~~~~g 201 (367)
T PRK14970 172 IKEHLAGIAVKEGIKFEDDALHIIAQKADG 201 (367)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHhCCC
Confidence 8888887777665 567777777776554
No 96
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.26 E-value=5.1e-11 Score=115.84 Aligned_cols=164 Identities=15% Similarity=0.236 Sum_probs=103.7
Q ss_pred hhhhhccCccccchhhhh---------HhccccCCCCcHHHHHHHHHHHcCCce------------------------EE
Q 020787 37 RSFEYLQGDYYIAPVFMA---------SLCIWGGKGQGKSFQTELIFQAMGIEP------------------------VI 83 (321)
Q Consensus 37 ~~~~~~~~~~~~~p~f~~---------iLgL~GPPGcGKTllaravA~e~g~~~------------------------i~ 83 (321)
++|+.+.|-=++-..|.. .++||||||||||++|+++|+++.+.. +.
T Consensus 13 ~~~~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~~~ 92 (363)
T PRK14961 13 QYFRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDLIE 92 (363)
T ss_pred CchhhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceEE
Confidence 455555554444333332 478999999999999999999997532 22
Q ss_pred eeccccccccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeecccccCCCCCCCccchhhHHHHHHHHhhcCCCCccccCc
Q 020787 84 MSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQ 163 (321)
Q Consensus 84 vs~~eL~s~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g 163 (321)
+.+++ ..+-..+|++.+.+... ...+...|+||||+|.... . ....|+..+..|
T Consensus 93 ~~~~~------~~~v~~ir~i~~~~~~~-p~~~~~kviIIDEa~~l~~-----------~-a~naLLk~lEe~------- 146 (363)
T PRK14961 93 IDAAS------RTKVEEMREILDNIYYS-PSKSRFKVYLIDEVHMLSR-----------H-SFNALLKTLEEP------- 146 (363)
T ss_pred ecccc------cCCHHHHHHHHHHHhcC-cccCCceEEEEEChhhcCH-----------H-HHHHHHHHHhcC-------
Confidence 22211 12335577777655322 1124567999999997631 1 112355555532
Q ss_pred cccccCCCCCccEEEeeCCCCCccccCCCCCCCcceec-CCCHHHHHHHHHHHhhcCC--CCHHHHHHhhhCCCC
Q 020787 164 DWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYW-QPNLEDILNIVHRMYEKDG--ITKDEVGSIVKTFPN 235 (321)
Q Consensus 164 ~~~~~~~~~~V~VIaaTNrp~~LDpALlRpGRfDr~i~-~Pd~~~R~~Il~~~~~~~~--l~~~dl~~L~d~f~g 235 (321)
..++.+|.+||.++.|.++++- |.-.+-+ .|+.++..++|+..++..+ ++.+.+..++....|
T Consensus 147 -------~~~~~fIl~t~~~~~l~~tI~S--Rc~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G 212 (363)
T PRK14961 147 -------PQHIKFILATTDVEKIPKTILS--RCLQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHG 212 (363)
T ss_pred -------CCCeEEEEEcCChHhhhHHHHh--hceEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 2467778888889999988764 5533222 3789999999988877665 666676666654444
No 97
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.25 E-value=2.9e-11 Score=107.26 Aligned_cols=148 Identities=15% Similarity=0.195 Sum_probs=93.3
Q ss_pred HhccccCCCCcHHHHHHHHHHHc---CCceEEeeccccccccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeecccccCC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM---GIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLG 131 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~---g~~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~~ 131 (321)
.++||||||||||++|+++++++ +.+++.++++++.+.. .+.+... .++.+|+|||+|....
T Consensus 40 ~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~~~--------~~~~~~~-------~~~~lLvIDdi~~l~~ 104 (226)
T TIGR03420 40 FLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQAD--------PEVLEGL-------EQADLVCLDDVEAIAG 104 (226)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHHhH--------HHHHhhc-------ccCCEEEEeChhhhcC
Confidence 68899999999999999999876 4788889998887432 2233221 1456999999998643
Q ss_pred CCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCC-CCCcc---ccCCCCCCCcceecC--CCH
Q 020787 132 RFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGND-FSTIY---APLIRDGRMEKFYWQ--PNL 205 (321)
Q Consensus 132 r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNr-p~~LD---pALlRpGRfDr~i~~--Pd~ 205 (321)
... .+ ..|..+++.. . ..+..||+|+|. ++.++ +.|.....+...+.+ |+.
T Consensus 105 ~~~-------~~---~~L~~~l~~~---------~----~~~~~iIits~~~~~~~~~~~~~L~~r~~~~~~i~l~~l~~ 161 (226)
T TIGR03420 105 QPE-------WQ---EALFHLYNRV---------R----EAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQLPPLSD 161 (226)
T ss_pred ChH-------HH---HHHHHHHHHH---------H----HcCCeEEEECCCChHHCCcccHHHHHHHhcCeeEecCCCCH
Confidence 210 01 1233333310 0 012356776664 43332 455542222345554 588
Q ss_pred HHHHHHHHHHhhcC--CCCHHHHHHhhhCCCCCcchh
Q 020787 206 EDILNIVHRMYEKD--GITKDEVGSIVKTFPNQALDF 240 (321)
Q Consensus 206 ~~R~~Il~~~~~~~--~l~~~dl~~L~d~f~gq~idf 240 (321)
+++..+++.+..+. .++.+-+..|+..+||..-..
T Consensus 162 ~e~~~~l~~~~~~~~~~~~~~~l~~L~~~~~gn~r~L 198 (226)
T TIGR03420 162 EEKIAALQSRAARRGLQLPDEVADYLLRHGSRDMGSL 198 (226)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHHHH
Confidence 99999998766543 567888899988777754333
No 98
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.22 E-value=1e-10 Score=120.35 Aligned_cols=170 Identities=17% Similarity=0.317 Sum_probs=115.8
Q ss_pred HHHHHhhhhhhccCccccchhhhh---------HhccccCCCCcHHHHHHHHHHHcCC----------------------
Q 020787 31 YRQKVTRSFEYLQGDYYIAPVFMA---------SLCIWGGKGQGKSFQTELIFQAMGI---------------------- 79 (321)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~p~f~~---------iLgL~GPPGcGKTllaravA~e~g~---------------------- 79 (321)
||.+--++|+.+.|-=++--.|.. .+++|||||||||++|+++|+.+.+
T Consensus 7 ~~k~rP~~f~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~~g~ 86 (559)
T PRK05563 7 YRKWRPQTFEDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAITNGS 86 (559)
T ss_pred HHHhCCCcHHhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCC
Confidence 677777788888876665555544 6789999999999999999999864
Q ss_pred --ceEEeeccccccccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeecccccCCCCCCCccchhhHHHHHHHHhhcCCCC
Q 020787 80 --EPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPT 157 (321)
Q Consensus 80 --~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~ 157 (321)
.++.+.++ .+.+-..||++...+... ...+...|+||||+|.+.. . -...|+..+.+|
T Consensus 87 ~~dv~eidaa------s~~~vd~ir~i~~~v~~~-p~~~~~kViIIDE~~~Lt~-----------~-a~naLLKtLEep- 146 (559)
T PRK05563 87 LMDVIEIDAA------SNNGVDEIRDIRDKVKYA-PSEAKYKVYIIDEVHMLST-----------G-AFNALLKTLEEP- 146 (559)
T ss_pred CCCeEEeecc------ccCCHHHHHHHHHHHhhC-cccCCeEEEEEECcccCCH-----------H-HHHHHHHHhcCC-
Confidence 33444442 234566789888877532 2245678999999997631 1 122455555533
Q ss_pred ccccCccccccCCCCCccEEEeeCCCCCccccCCCCCCCcceec-CCCHHHHHHHHHHHhhcCC--CCHHHHHHhhhCCC
Q 020787 158 RVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYW-QPNLEDILNIVHRMYEKDG--ITKDEVGSIVKTFP 234 (321)
Q Consensus 158 ~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpALlRpGRfDr~i~-~Pd~~~R~~Il~~~~~~~~--l~~~dl~~L~d~f~ 234 (321)
...+.+|.+|+.++.|+++++. |..++-+ .|+.++-..+|+.++++.+ ++.+.+..++....
T Consensus 147 -------------p~~~ifIlatt~~~ki~~tI~S--Rc~~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s~ 211 (559)
T PRK05563 147 -------------PAHVIFILATTEPHKIPATILS--RCQRFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAE 211 (559)
T ss_pred -------------CCCeEEEEEeCChhhCcHHHHh--HheEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 2356666677889999999775 5544334 4788888888888777665 45566666665444
Q ss_pred C
Q 020787 235 N 235 (321)
Q Consensus 235 g 235 (321)
|
T Consensus 212 G 212 (559)
T PRK05563 212 G 212 (559)
T ss_pred C
Confidence 4
No 99
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.22 E-value=6.4e-11 Score=124.31 Aligned_cols=171 Identities=15% Similarity=0.249 Sum_probs=114.4
Q ss_pred HHHHHhhhhhhccCccccchhhhh---------HhccccCCCCcHHHHHHHHHHHcCC----------------------
Q 020787 31 YRQKVTRSFEYLQGDYYIAPVFMA---------SLCIWGGKGQGKSFQTELIFQAMGI---------------------- 79 (321)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~p~f~~---------iLgL~GPPGcGKTllaravA~e~g~---------------------- 79 (321)
+|.+--++|+.+.|-=++--.+.. .++||||+|||||++|+++|+.+.+
T Consensus 7 arKYRPqtFddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~ 86 (700)
T PRK12323 7 ARKWRPRDFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTE 86 (700)
T ss_pred HHHhCCCcHHHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHH
Confidence 444556778888777666555444 6799999999999999999999987
Q ss_pred -------ceEEeeccccccccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeecccccCCCCCCCccchhhHHHHHHHHhh
Q 020787 80 -------EPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNL 152 (321)
Q Consensus 80 -------~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~~r~~~t~~~v~~q~V~~tLl~l 152 (321)
.++.+++++ ..+-..||++.+.+.... ..++-.|+||||+|.+-. ...+ .||..
T Consensus 87 I~aG~hpDviEIdAas------~~gVDdIReLie~~~~~P-~~gr~KViIIDEah~Ls~-----------~AaN-ALLKT 147 (700)
T PRK12323 87 IDAGRFVDYIEMDAAS------NRGVDEMAQLLDKAVYAP-TAGRFKVYMIDEVHMLTN-----------HAFN-AMLKT 147 (700)
T ss_pred HHcCCCCcceEecccc------cCCHHHHHHHHHHHHhch-hcCCceEEEEEChHhcCH-----------HHHH-HHHHh
Confidence 233333321 122355777777665332 256778999999998732 1222 45555
Q ss_pred cCCCCccccCccccccCCCCCccEEEeeCCCCCccccCCCCCCCcceec-CCCHHHHHHHHHHHhhcCCC--CHHHHHHh
Q 020787 153 SDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYW-QPNLEDILNIVHRMYEKDGI--TKDEVGSI 229 (321)
Q Consensus 153 lD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpALlRpGRfDr~i~-~Pd~~~R~~Il~~~~~~~~l--~~~dl~~L 229 (321)
|..| ..++.+|.+||.++.|.+.++- |.-++-+ .++.++-.+.|+.++...++ +.+.+..|
T Consensus 148 LEEP--------------P~~v~FILaTtep~kLlpTIrS--RCq~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~I 211 (700)
T PRK12323 148 LEEP--------------PEHVKFILATTDPQKIPVTVLS--RCLQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLL 211 (700)
T ss_pred hccC--------------CCCceEEEEeCChHhhhhHHHH--HHHhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 5522 4578899999999999999876 6644444 37888888888877766554 44445555
Q ss_pred hhCCCCC
Q 020787 230 VKTFPNQ 236 (321)
Q Consensus 230 ~d~f~gq 236 (321)
+....|.
T Consensus 212 A~~A~Gs 218 (700)
T PRK12323 212 AQAAQGS 218 (700)
T ss_pred HHHcCCC
Confidence 5544443
No 100
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.22 E-value=1e-10 Score=119.47 Aligned_cols=176 Identities=18% Similarity=0.274 Sum_probs=112.1
Q ss_pred HHHHHhhhhhhccCccccchhhhh---------HhccccCCCCcHHHHHHHHHHHcCCceEEee----------------
Q 020787 31 YRQKVTRSFEYLQGDYYIAPVFMA---------SLCIWGGKGQGKSFQTELIFQAMGIEPVIMS---------------- 85 (321)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~p~f~~---------iLgL~GPPGcGKTllaravA~e~g~~~i~vs---------------- 85 (321)
+|.+-.++|..+.|-=.+-..+.. .++||||||||||++|+++|+.+.+.--...
T Consensus 12 a~kyRP~~f~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i 91 (507)
T PRK06645 12 ARKYRPSNFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISF 91 (507)
T ss_pred hhhhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHH
Confidence 344445666666655443333222 6899999999999999999999987321100
Q ss_pred ----ccccccc--cCCCcHHHHHHHHHHHHhhhhhcCCceEEEeecccccCCCCCCCccchhhHHHHHHHHhhcCCCCcc
Q 020787 86 ----AGELESE--RAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRV 159 (321)
Q Consensus 86 ----~~eL~s~--~~GEser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~v 159 (321)
-+++..- -...+-..||++...|... ...+...|++|||+|.... ... ..|+..+.+|
T Consensus 92 ~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~-P~~~~~KVvIIDEa~~Ls~-----------~a~-naLLk~LEep--- 155 (507)
T PRK06645 92 NNHNHPDIIEIDAASKTSVDDIRRIIESAEYK-PLQGKHKIFIIDEVHMLSK-----------GAF-NALLKTLEEP--- 155 (507)
T ss_pred hcCCCCcEEEeeccCCCCHHHHHHHHHHHHhc-cccCCcEEEEEEChhhcCH-----------HHH-HHHHHHHhhc---
Confidence 0122110 0123456789988877533 2245678999999987631 112 2455555532
Q ss_pred ccCccccccCCCCCccEEEeeCCCCCccccCCCCCCCcceec-CCCHHHHHHHHHHHhhcCCC--CHHHHHHhhhCCCC
Q 020787 160 SIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYW-QPNLEDILNIVHRMYEKDGI--TKDEVGSIVKTFPN 235 (321)
Q Consensus 160 ql~g~~~~~~~~~~V~VIaaTNrp~~LDpALlRpGRfDr~i~-~Pd~~~R~~Il~~~~~~~~l--~~~dl~~L~d~f~g 235 (321)
...+.+|.+||.++.|+++++. |.-++-+ .++.++..++++.+++..++ +.+.+..|+....|
T Consensus 156 -----------p~~~vfI~aTte~~kI~~tI~S--Rc~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s~G 221 (507)
T PRK06645 156 -----------PPHIIFIFATTEVQKIPATIIS--RCQRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEG 221 (507)
T ss_pred -----------CCCEEEEEEeCChHHhhHHHHh--cceEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 3467777788899999999876 5433323 47899999999988887664 55666666665544
No 101
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.22 E-value=9.1e-11 Score=123.28 Aligned_cols=170 Identities=16% Similarity=0.279 Sum_probs=113.0
Q ss_pred HHHHHhhhhhhccCccccchhhhh---------HhccccCCCCcHHHHHHHHHHHcCC----------------------
Q 020787 31 YRQKVTRSFEYLQGDYYIAPVFMA---------SLCIWGGKGQGKSFQTELIFQAMGI---------------------- 79 (321)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~p~f~~---------iLgL~GPPGcGKTllaravA~e~g~---------------------- 79 (321)
||.+--++|+.+.|-=++--.+.. .++||||||||||++|+++|+.+++
T Consensus 6 arKyRPktFddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~ 85 (702)
T PRK14960 6 ARKYRPRNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGR 85 (702)
T ss_pred HHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCC
Confidence 334445677777766555443333 6799999999999999999999987
Q ss_pred --ceEEeeccccccccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeecccccCCCCCCCccchhhHHHHHHHHhhcCCCC
Q 020787 80 --EPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPT 157 (321)
Q Consensus 80 --~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~ 157 (321)
.++.+++++- .+-..||++...+... ...++..|+||||+|.+-.. -...|+..+..|
T Consensus 86 hpDviEIDAAs~------~~VddIReli~~~~y~-P~~gk~KV~IIDEVh~LS~~------------A~NALLKtLEEP- 145 (702)
T PRK14960 86 FIDLIEIDAASR------TKVEDTRELLDNVPYA-PTQGRFKVYLIDEVHMLSTH------------SFNALLKTLEEP- 145 (702)
T ss_pred CCceEEeccccc------CCHHHHHHHHHHHhhh-hhcCCcEEEEEechHhcCHH------------HHHHHHHHHhcC-
Confidence 3444444321 1244677776655422 22467789999999976321 122466666632
Q ss_pred ccccCccccccCCCCCccEEEeeCCCCCccccCCCCCCCcceec-CCCHHHHHHHHHHHhhcCC--CCHHHHHHhhhCCC
Q 020787 158 RVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYW-QPNLEDILNIVHRMYEKDG--ITKDEVGSIVKTFP 234 (321)
Q Consensus 158 ~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpALlRpGRfDr~i~-~Pd~~~R~~Il~~~~~~~~--l~~~dl~~L~d~f~ 234 (321)
...+.+|.+||.+..+.++++. |.-++-+ .++.++-...|+.++++.+ ++.+.+..|+....
T Consensus 146 -------------P~~v~FILaTtd~~kIp~TIlS--RCq~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~ 210 (702)
T PRK14960 146 -------------PEHVKFLFATTDPQKLPITVIS--RCLQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQ 210 (702)
T ss_pred -------------CCCcEEEEEECChHhhhHHHHH--hhheeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 3468888899999999988874 7765444 3688888888887777665 45566666665444
Q ss_pred C
Q 020787 235 N 235 (321)
Q Consensus 235 g 235 (321)
|
T Consensus 211 G 211 (702)
T PRK14960 211 G 211 (702)
T ss_pred C
Confidence 4
No 102
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.22 E-value=9.3e-11 Score=110.92 Aligned_cols=146 Identities=18% Similarity=0.337 Sum_probs=100.8
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCc------------------------eEEeeccccccccCCCcHHHHHHHHHHHHh
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIE------------------------PVIMSAGELESERAGEPGKLIRERYRTASQ 110 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~------------------------~i~vs~~eL~s~~~GEser~IR~~F~~A~~ 110 (321)
.++||||||+|||++|+++|+.+.+. ++.+++++ ..+-..+|+++..+..
T Consensus 38 ~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~ 111 (355)
T TIGR02397 38 AYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDVIEIDAAS------NNGVDDIREILDNVKY 111 (355)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEeeccc------cCCHHHHHHHHHHHhc
Confidence 57899999999999999999997643 33444331 2244568889888753
Q ss_pred hhhhcCCceEEEeecccccCCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccccC
Q 020787 111 VVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPL 190 (321)
Q Consensus 111 ~~~~~gaPcILFIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpAL 190 (321)
.. ..+...|++|||+|.... .....|+..+++| ...+.+|++||+++.|.++|
T Consensus 112 ~p-~~~~~~vviidea~~l~~------------~~~~~Ll~~le~~--------------~~~~~lIl~~~~~~~l~~~l 164 (355)
T TIGR02397 112 AP-SSGKYKVYIIDEVHMLSK------------SAFNALLKTLEEP--------------PEHVVFILATTEPHKIPATI 164 (355)
T ss_pred Cc-ccCCceEEEEeChhhcCH------------HHHHHHHHHHhCC--------------ccceeEEEEeCCHHHHHHHH
Confidence 31 134557999999987632 1123455555532 23677788889999999888
Q ss_pred CCCCCCcceec-CCCHHHHHHHHHHHhhcCC--CCHHHHHHhhhCCCC
Q 020787 191 IRDGRMEKFYW-QPNLEDILNIVHRMYEKDG--ITKDEVGSIVKTFPN 235 (321)
Q Consensus 191 lRpGRfDr~i~-~Pd~~~R~~Il~~~~~~~~--l~~~dl~~L~d~f~g 235 (321)
+. |+..+-+ .|+.++..++++.++++.+ ++.+.+..|++...|
T Consensus 165 ~s--r~~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g 210 (355)
T TIGR02397 165 LS--RCQRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADG 210 (355)
T ss_pred Hh--heeEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 76 6654333 3788999999988877665 566777777765555
No 103
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.21 E-value=3.1e-11 Score=121.23 Aligned_cols=161 Identities=14% Similarity=0.195 Sum_probs=102.1
Q ss_pred HhccccCCCCcHHHHHHHHHHHc-----CCceEEeeccccccccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeeccccc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM-----GIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAG 129 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~-----g~~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg 129 (321)
-|.||||+|||||.|++|+++++ +..++.+++.++...+...-.... +.+.+.++.. ..+.+|+||||+.+
T Consensus 143 pl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~-~~~~~~~~~~---~~~dvLiIDDiq~l 218 (450)
T PRK14087 143 PLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTH-KEIEQFKNEI---CQNDVLIIDDVQFL 218 (450)
T ss_pred ceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhh-hHHHHHHHHh---ccCCEEEEeccccc
Confidence 58899999999999999999954 578889999998876543211100 1222222222 26789999999998
Q ss_pred CCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCC----ccccCCCCCCCcce----ec
Q 020787 130 LGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFST----IYAPLIRDGRMEKF----YW 201 (321)
Q Consensus 130 ~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~----LDpALlRpGRfDr~----i~ 201 (321)
.++.. .+. .|..+++.. . ..+.+||+|+|++.. +++.|+- ||..- +.
T Consensus 219 ~~k~~-------~~e---~lf~l~N~~---------~----~~~k~iIltsd~~P~~l~~l~~rL~S--R~~~Gl~~~L~ 273 (450)
T PRK14087 219 SYKEK-------TNE---IFFTIFNNF---------I----ENDKQLFFSSDKSPELLNGFDNRLIT--RFNMGLSIAIQ 273 (450)
T ss_pred cCCHH-------HHH---HHHHHHHHH---------H----HcCCcEEEECCCCHHHHhhccHHHHH--HHhCCceeccC
Confidence 65421 122 233333310 0 123478889888753 2333433 55431 22
Q ss_pred CCCHHHHHHHHHHHhhcC----CCCHHHHHHhhhCCCCCcchhhHHH
Q 020787 202 QPNLEDILNIVHRMYEKD----GITKDEVGSIVKTFPNQALDFYGAL 244 (321)
Q Consensus 202 ~Pd~~~R~~Il~~~~~~~----~l~~~dl~~L~d~f~gq~idf~gAl 244 (321)
.|+.++|.+||+..++.. .++.+-+..|+..++|-.=...||+
T Consensus 274 ~pd~e~r~~iL~~~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL 320 (450)
T PRK14087 274 KLDNKTATAIIKKEIKNQNIKQEVTEEAINFISNYYSDDVRKIKGSV 320 (450)
T ss_pred CcCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHH
Confidence 499999999999887754 3778888889988887543334443
No 104
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.21 E-value=1.8e-10 Score=106.80 Aligned_cols=146 Identities=16% Similarity=0.201 Sum_probs=95.8
Q ss_pred hccccCCCCcHHHHHHHHHHHcC-----CceEEeeccccccccCCCcHHHHHHHHHHHHhhhhhc-CCceEEEeeccccc
Q 020787 56 LCIWGGKGQGKSFQTELIFQAMG-----IEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQ-GKMSCLMINDIDAG 129 (321)
Q Consensus 56 LgL~GPPGcGKTllaravA~e~g-----~~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~~-gaPcILFIDEIDAg 129 (321)
++||||||||||++++++++++. .+++.+++++-. .-..+++.+.......... ..+.+|+|||+|..
T Consensus 41 ~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~~------~~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l 114 (319)
T PRK00440 41 LLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDER------GIDVIRNKIKEFARTAPVGGAPFKIIFLDEADNL 114 (319)
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCccccceEEecccccc------chHHHHHHHHHHHhcCCCCCCCceEEEEeCcccC
Confidence 69999999999999999999973 355666554321 2234444444433221111 34679999999887
Q ss_pred CCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccccCCCCCCCcceec-CCCHHHH
Q 020787 130 LGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYW-QPNLEDI 208 (321)
Q Consensus 130 ~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpALlRpGRfDr~i~-~Pd~~~R 208 (321)
... ....|+..++++ ..++.+|.++|.+..+.+++.. |....-+ .|+.++.
T Consensus 115 ~~~------------~~~~L~~~le~~--------------~~~~~lIl~~~~~~~l~~~l~s--r~~~~~~~~l~~~ei 166 (319)
T PRK00440 115 TSD------------AQQALRRTMEMY--------------SQNTRFILSCNYSSKIIDPIQS--RCAVFRFSPLKKEAV 166 (319)
T ss_pred CHH------------HHHHHHHHHhcC--------------CCCCeEEEEeCCccccchhHHH--HhheeeeCCCCHHHH
Confidence 321 122455555532 2346678888988888888776 4443222 4788999
Q ss_pred HHHHHHHhhcCC--CCHHHHHHhhhCCCC
Q 020787 209 LNIVHRMYEKDG--ITKDEVGSIVKTFPN 235 (321)
Q Consensus 209 ~~Il~~~~~~~~--l~~~dl~~L~d~f~g 235 (321)
..+++.++++.+ ++.+.+..|+....|
T Consensus 167 ~~~l~~~~~~~~~~i~~~al~~l~~~~~g 195 (319)
T PRK00440 167 AERLRYIAENEGIEITDDALEAIYYVSEG 195 (319)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 999988887665 567888888876655
No 105
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.21 E-value=1.1e-10 Score=121.38 Aligned_cols=162 Identities=19% Similarity=0.265 Sum_probs=93.8
Q ss_pred HhccccCCCCcHHHHHHHHHHHc----------CCceEEeeccccc-------cccCCCcHHHHHHHHHHHHhhhhhcC-
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM----------GIEPVIMSAGELE-------SERAGEPGKLIRERYRTASQVVQNQG- 116 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~----------g~~~i~vs~~eL~-------s~~~GEser~IR~~F~~A~~~~~~~g- 116 (321)
.++|+||||||||++|+++++.. +.+|+.+++..+- ..+.|..... .|..|++..+..+
T Consensus 177 ~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~~llg~~~~~---~~~~a~~~l~~~gl 253 (615)
T TIGR02903 177 HIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVTNPLLGSVHDP---IYQGARRDLAETGV 253 (615)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHhHHhcCCccHH---HHHHHHHHHHHcCC
Confidence 58999999999999999998765 4679999987652 2233322111 1222211111001
Q ss_pred -----------CceEEEeecccccCCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccC--------------CC
Q 020787 117 -----------KMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESD--------------IT 171 (321)
Q Consensus 117 -----------aPcILFIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~--------------~~ 171 (321)
...+|||||++.+-+ ..+..|+..+.+-...-..+.|+..+ ..
T Consensus 254 ~~~~~g~v~~asgGvL~LDEi~~Ld~------------~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~ 321 (615)
T TIGR02903 254 PEPKTGLVTDAHGGVLFIDEIGELDP------------LLQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAP 321 (615)
T ss_pred CchhcCchhhcCCCeEEEeccccCCH------------HHHHHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCcc
Confidence 235999999987532 12334555554321111122222211 01
Q ss_pred CCccEEE-eeCCCCCccccCCCCCCCcceecCC-CHHHHHHHHHHHhhcCC--CCHHHHHHhhhCCC
Q 020787 172 NRIPIIF-TGNDFSTIYAPLIRDGRMEKFYWQP-NLEDILNIVHRMYEKDG--ITKDEVGSIVKTFP 234 (321)
Q Consensus 172 ~~V~VIa-aTNrp~~LDpALlRpGRfDr~i~~P-d~~~R~~Il~~~~~~~~--l~~~dl~~L~d~f~ 234 (321)
..+.+|+ |||.++.++|+|+. |+..+.+.| +.++..+|++......+ ++.+ +..+...++
T Consensus 322 ~~~VLI~aTt~~~~~l~~aLrS--R~~~i~~~pls~edi~~Il~~~a~~~~v~ls~e-al~~L~~ys 385 (615)
T TIGR02903 322 ADFVLIGATTRDPEEINPALRS--RCAEVFFEPLTPEDIALIVLNAAEKINVHLAAG-VEELIARYT 385 (615)
T ss_pred ceEEEEEeccccccccCHHHHh--ceeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHCC
Confidence 1233444 56779999999876 898766654 78999999998877654 4544 444443343
No 106
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.20 E-value=1.4e-10 Score=123.30 Aligned_cols=169 Identities=15% Similarity=0.235 Sum_probs=110.2
Q ss_pred HHHHhhhhhhccCccccchhhhh---------HhccccCCCCcHHHHHHHHHHHcCCc----------------------
Q 020787 32 RQKVTRSFEYLQGDYYIAPVFMA---------SLCIWGGKGQGKSFQTELIFQAMGIE---------------------- 80 (321)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~p~f~~---------iLgL~GPPGcGKTllaravA~e~g~~---------------------- 80 (321)
|.+--++|+.+.|-=++-..+.. .++||||||||||++++++|+.+.+.
T Consensus 8 rKYRPqtFdEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h 87 (830)
T PRK07003 8 RKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRF 87 (830)
T ss_pred HHhCCCcHHHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCC
Confidence 33345566666665444333322 57899999999999999999999863
Q ss_pred --eEEeeccccccccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeecccccCCCCCCCccchhhHHHHHHHHhhcCCCCc
Q 020787 81 --PVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTR 158 (321)
Q Consensus 81 --~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~ 158 (321)
++.+++++ ..+-..||++.+.+.... ..++-.||||||+|.+.. ... ..||..|..|
T Consensus 88 ~DviEIDAas------~rgVDdIReLIe~a~~~P-~~gr~KVIIIDEah~LT~-----------~A~-NALLKtLEEP-- 146 (830)
T PRK07003 88 VDYVEMDAAS------NRGVDEMAALLERAVYAP-VDARFKVYMIDEVHMLTN-----------HAF-NAMLKTLEEP-- 146 (830)
T ss_pred ceEEEecccc------cccHHHHHHHHHHHHhcc-ccCCceEEEEeChhhCCH-----------HHH-HHHHHHHHhc--
Confidence 33333321 122345788887765321 135678999999998742 112 2344444421
Q ss_pred cccCccccccCCCCCccEEEeeCCCCCccccCCCCCCCcceecC-CCHHHHHHHHHHHhhcCCC--CHHHHHHhhhCCCC
Q 020787 159 VSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQ-PNLEDILNIVHRMYEKDGI--TKDEVGSIVKTFPN 235 (321)
Q Consensus 159 vql~g~~~~~~~~~~V~VIaaTNrp~~LDpALlRpGRfDr~i~~-Pd~~~R~~Il~~~~~~~~l--~~~dl~~L~d~f~g 235 (321)
..++.+|.+||.++.|.++++- |.-++-+- ++.++-.++|+.++.+.++ +.+.+..|+....|
T Consensus 147 ------------P~~v~FILaTtd~~KIp~TIrS--RCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~G 212 (830)
T PRK07003 147 ------------PPHVKFILATTDPQKIPVTVLS--RCLQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQG 212 (830)
T ss_pred ------------CCCeEEEEEECChhhccchhhh--heEEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 3578899999999999988776 66554443 5788888888888876654 45666655554444
No 107
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.20 E-value=1.8e-10 Score=100.87 Aligned_cols=143 Identities=14% Similarity=0.164 Sum_probs=95.6
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCc------------------------eEEeeccccccccCCCcHHHHHHHHHHHHh
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIE------------------------PVIMSAGELESERAGEPGKLIRERYRTASQ 110 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~------------------------~i~vs~~eL~s~~~GEser~IR~~F~~A~~ 110 (321)
.++||||||+|||.+|+++++++-.. +..+... ... -+-..||++.+.+..
T Consensus 16 ~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~---~~~--~~~~~i~~i~~~~~~ 90 (188)
T TIGR00678 16 AYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPE---GQS--IKVDQVRELVEFLSR 90 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccc---cCc--CCHHHHHHHHHHHcc
Confidence 57899999999999999999998653 2222111 001 123577777777754
Q ss_pred hhhhcCCceEEEeecccccCCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccccC
Q 020787 111 VVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPL 190 (321)
Q Consensus 111 ~~~~~gaPcILFIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpAL 190 (321)
.. ..+...||+|||+|...+. ....|+..+.+| .+.+.+|.+||.++.|++++
T Consensus 91 ~~-~~~~~kviiide~~~l~~~------------~~~~Ll~~le~~--------------~~~~~~il~~~~~~~l~~~i 143 (188)
T TIGR00678 91 TP-QESGRRVVIIEDAERMNEA------------AANALLKTLEEP--------------PPNTLFILITPSPEKLLPTI 143 (188)
T ss_pred Cc-ccCCeEEEEEechhhhCHH------------HHHHHHHHhcCC--------------CCCeEEEEEECChHhChHHH
Confidence 32 2457789999999887421 122466666633 24566777788889999999
Q ss_pred CCCCCCcceec-CCCHHHHHHHHHHHhhcCCCCHHHHHHhhhCCCC
Q 020787 191 IRDGRMEKFYW-QPNLEDILNIVHRMYEKDGITKDEVGSIVKTFPN 235 (321)
Q Consensus 191 lRpGRfDr~i~-~Pd~~~R~~Il~~~~~~~~l~~~dl~~L~d~f~g 235 (321)
.. |....-+ .|+.++..++|+.. +++.+.+..++....|
T Consensus 144 ~s--r~~~~~~~~~~~~~~~~~l~~~----gi~~~~~~~i~~~~~g 183 (188)
T TIGR00678 144 RS--RCQVLPFPPLSEEALLQWLIRQ----GISEEAAELLLALAGG 183 (188)
T ss_pred Hh--hcEEeeCCCCCHHHHHHHHHHc----CCCHHHHHHHHHHcCC
Confidence 87 4433222 37899988888765 4777777777765544
No 108
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.19 E-value=8.4e-11 Score=120.23 Aligned_cols=157 Identities=20% Similarity=0.284 Sum_probs=91.8
Q ss_pred HhccccCCCCcHHHHHHHHHHHc----------CCceEEeeccc-------cccccCCCcHHHHHHHHHHHHhh------
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM----------GIEPVIMSAGE-------LESERAGEPGKLIRERYRTASQV------ 111 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~----------g~~~i~vs~~e-------L~s~~~GEser~IR~~F~~A~~~------ 111 (321)
-++|+||||||||++|+++.+.+ +.+|+.+++.. +.+...|....- .|.-|...
T Consensus 88 ~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~~~~~~~~~~~~li~~~~~p---~~~~~~~~g~~g~~ 164 (531)
T TIGR02902 88 HVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATTARFDERGIADPLIGSVHDP---IYQGAGPLGIAGIP 164 (531)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEccccccCCccccchhhcCCcccc---hhccccccccCCcc
Confidence 57899999999999999998653 47889998763 222222211000 01100000
Q ss_pred ------hhhcCCceEEEeecccccCCCCCCCccchhhHHHHHHHHhhcCCCCccccC-ccccccC--------------C
Q 020787 112 ------VQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIG-QDWRESD--------------I 170 (321)
Q Consensus 112 ------~~~~gaPcILFIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~-g~~~~~~--------------~ 170 (321)
.. +....+|||||||..-+ ..+..|+..+.+.. +.+. +.+.+.+ .
T Consensus 165 ~~~~G~l~-~a~gG~L~IdEI~~L~~------------~~q~~LL~~Le~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (531)
T TIGR02902 165 QPKPGAVT-RAHGGVLFIDEIGELHP------------VQMNKLLKVLEDRK-VFLDSAYYNSENPNIPSHIHDIFQNGL 230 (531)
T ss_pred cccCchhh-ccCCcEEEEechhhCCH------------HHHHHHHHHHHhCe-eeeccccccccCcccccchhhhcccCc
Confidence 00 11347999999999743 23334555553211 1111 1111111 0
Q ss_pred CCCccE-EEeeCCCCCccccCCCCCCCcceecC-CCHHHHHHHHHHHhhcCC--CCHHHHHHhh
Q 020787 171 TNRIPI-IFTGNDFSTIYAPLIRDGRMEKFYWQ-PNLEDILNIVHRMYEKDG--ITKDEVGSIV 230 (321)
Q Consensus 171 ~~~V~V-IaaTNrp~~LDpALlRpGRfDr~i~~-Pd~~~R~~Il~~~~~~~~--l~~~dl~~L~ 230 (321)
...+.+ ++|||.|+.|+|||++ |+....+. ++.+++..|++...++.+ ++.+.+..|.
T Consensus 231 ~~d~rlI~ATt~~p~~L~paLrs--R~~~I~f~pL~~eei~~Il~~~a~k~~i~is~~al~~I~ 292 (531)
T TIGR02902 231 PADFRLIGATTRNPEEIPPALRS--RCVEIFFRPLLDEEIKEIAKNAAEKIGINLEKHALELIV 292 (531)
T ss_pred ccceEEEEEecCCcccCChHHhh--hhheeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHH
Confidence 123334 4567889999999998 88765554 478889999998887665 4555565554
No 109
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.17 E-value=2.6e-10 Score=116.37 Aligned_cols=144 Identities=14% Similarity=0.248 Sum_probs=94.0
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCc-----------------------eEEeeccccccccCCCcHHHHHHHHHHHHhh
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIE-----------------------PVIMSAGELESERAGEPGKLIRERYRTASQV 111 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~-----------------------~i~vs~~eL~s~~~GEser~IR~~F~~A~~~ 111 (321)
.++||||||||||++|+++|+.+.+. ++.+++++ .-+-..||++-..+...
T Consensus 38 a~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~el~~~~------~~~vd~iR~l~~~~~~~ 111 (504)
T PRK14963 38 AYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVLEIDAAS------NNSVEDVRDLREKVLLA 111 (504)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhc
Confidence 45999999999999999999998652 44444431 11245678775555432
Q ss_pred hhhcCCceEEEeecccccCCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccccCC
Q 020787 112 VQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLI 191 (321)
Q Consensus 112 ~~~~gaPcILFIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpALl 191 (321)
...+.+.||+|||+|.... .....|+..+.+| ...+.+|.+||.++.|++++.
T Consensus 112 -p~~~~~kVVIIDEad~ls~------------~a~naLLk~LEep--------------~~~t~~Il~t~~~~kl~~~I~ 164 (504)
T PRK14963 112 -PLRGGRKVYILDEAHMMSK------------SAFNALLKTLEEP--------------PEHVIFILATTEPEKMPPTIL 164 (504)
T ss_pred -cccCCCeEEEEECccccCH------------HHHHHHHHHHHhC--------------CCCEEEEEEcCChhhCChHHh
Confidence 1245788999999985421 1123455555532 235667778899999999887
Q ss_pred CCCCCcceec-CCCHHHHHHHHHHHhhcCCC--CHHHHHHhhhCC
Q 020787 192 RDGRMEKFYW-QPNLEDILNIVHRMYEKDGI--TKDEVGSIVKTF 233 (321)
Q Consensus 192 RpGRfDr~i~-~Pd~~~R~~Il~~~~~~~~l--~~~dl~~L~d~f 233 (321)
. |...+-+ .|+.++-.+.|+.+++..++ +.+.+..|+...
T Consensus 165 S--Rc~~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s 207 (504)
T PRK14963 165 S--RTQHFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLA 207 (504)
T ss_pred c--ceEEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 6 5444333 37888888888877776554 455555555433
No 110
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.16 E-value=6.9e-11 Score=112.93 Aligned_cols=145 Identities=16% Similarity=0.118 Sum_probs=89.0
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeeccccccc--cCCCcHHHHHHH-HHHHHhhhhhcC-Cc--eEEEeecccc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESE--RAGEPGKLIRER-YRTASQVVQNQG-KM--SCLMINDIDA 128 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~--~~GEser~IR~~-F~~A~~~~~~~g-aP--cILFIDEIDA 128 (321)
.++|.||||||||++|+++|+.++.+|+.+...+-..+ ..|...-..+.. ... ....+--. .. +|+|+|||+.
T Consensus 45 ~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~-~~~~~gpl~~~~~~ill~DEInr 123 (329)
T COG0714 45 HVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGE-FRFVPGPLFAAVRVILLLDEINR 123 (329)
T ss_pred CEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCe-EEEecCCcccccceEEEEecccc
Confidence 78999999999999999999999999999988543332 223322111100 000 00000000 11 5999999998
Q ss_pred cCCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeC-----CCCCccccCCCCCCCcceecC-
Q 020787 129 GLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGN-----DFSTIYAPLIRDGRMEKFYWQ- 202 (321)
Q Consensus 129 g~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTN-----rp~~LDpALlRpGRfDr~i~~- 202 (321)
.-+ .++..|+..|+. ..|.+++.- +........||+|.| .-..|+.|+++ ||--.+|+
T Consensus 124 a~p------------~~q~aLl~~l~e-~~vtv~~~~-~~~~~~~f~viaT~Np~e~~g~~~l~eA~ld--Rf~~~~~v~ 187 (329)
T COG0714 124 APP------------EVQNALLEALEE-RQVTVPGLT-TIRLPPPFIVIATQNPGEYEGTYPLPEALLD--RFLLRIYVD 187 (329)
T ss_pred CCH------------HHHHHHHHHHhC-cEEEECCcC-CcCCCCCCEEEEccCccccCCCcCCCHHHHh--hEEEEEecC
Confidence 654 355667777763 335555521 012224566677779 67778999999 99655554
Q ss_pred -C-CHHHHHHHHHHHh
Q 020787 203 -P-NLEDILNIVHRMY 216 (321)
Q Consensus 203 -P-d~~~R~~Il~~~~ 216 (321)
| ..++...|+....
T Consensus 188 yp~~~~e~~~i~~~~~ 203 (329)
T COG0714 188 YPDSEEEERIILARVG 203 (329)
T ss_pred CCCchHHHHHHHHhCc
Confidence 6 6666666665433
No 111
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.16 E-value=2.3e-10 Score=120.67 Aligned_cols=152 Identities=13% Similarity=0.253 Sum_probs=100.3
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEE-------------eecc---ccc--cccCCCcHHHHHHHHHHHHhhhhhcC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVI-------------MSAG---ELE--SERAGEPGKLIRERYRTASQVVQNQG 116 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~-------------vs~~---eL~--s~~~GEser~IR~~F~~A~~~~~~~g 116 (321)
.++||||||||||++|+++|+.+.+.--. +..+ +++ +...+.+-..||++...+... ...+
T Consensus 40 a~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~DvlEidaAs~~gVd~IRelle~a~~~-P~~g 118 (709)
T PRK08691 40 AYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYA-PTAG 118 (709)
T ss_pred EEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccceEEEeccccCCHHHHHHHHHHHHhh-hhhC
Confidence 68999999999999999999998764110 0011 111 111233456788888766432 1235
Q ss_pred CceEEEeecccccCCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccccCCCCCCC
Q 020787 117 KMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRM 196 (321)
Q Consensus 117 aPcILFIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpALlRpGRf 196 (321)
+..||||||+|.+.. . ....|+..+..| ...+.+|.+||++..|.+.++ +|+
T Consensus 119 k~KVIIIDEad~Ls~-----------~-A~NALLKtLEEP--------------p~~v~fILaTtd~~kL~~TIr--SRC 170 (709)
T PRK08691 119 KYKVYIIDEVHMLSK-----------S-AFNAMLKTLEEP--------------PEHVKFILATTDPHKVPVTVL--SRC 170 (709)
T ss_pred CcEEEEEECccccCH-----------H-HHHHHHHHHHhC--------------CCCcEEEEEeCCccccchHHH--HHH
Confidence 678999999986531 1 122456565532 347888889999999998876 577
Q ss_pred cceec-CCCHHHHHHHHHHHhhcCC--CCHHHHHHhhhCCCC
Q 020787 197 EKFYW-QPNLEDILNIVHRMYEKDG--ITKDEVGSIVKTFPN 235 (321)
Q Consensus 197 Dr~i~-~Pd~~~R~~Il~~~~~~~~--l~~~dl~~L~d~f~g 235 (321)
-++-+ .++.++-...|+.++++.+ ++...+..|+....|
T Consensus 171 ~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~G 212 (709)
T PRK08691 171 LQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAG 212 (709)
T ss_pred hhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCC
Confidence 44333 3788888888988888765 455666666655544
No 112
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.15 E-value=2.6e-10 Score=116.44 Aligned_cols=170 Identities=13% Similarity=0.236 Sum_probs=107.7
Q ss_pred HHHHHhhhhhhccCccccchhhhh---------HhccccCCCCcHHHHHHHHHHHcCCc---------------------
Q 020787 31 YRQKVTRSFEYLQGDYYIAPVFMA---------SLCIWGGKGQGKSFQTELIFQAMGIE--------------------- 80 (321)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~p~f~~---------iLgL~GPPGcGKTllaravA~e~g~~--------------------- 80 (321)
+|.+--++|+.+.|-=++-..+.. -+++|||||||||++|+++|+.+.+.
T Consensus 7 ~~kyRP~~f~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~ 86 (509)
T PRK14958 7 ARKWRPRCFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGR 86 (509)
T ss_pred HHHHCCCCHHHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCC
Confidence 344456677777776666554444 57999999999999999999999873
Q ss_pred ---eEEeeccccccccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeecccccCCCCCCCccchhhHHHHHHHHhhcCCCC
Q 020787 81 ---PVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPT 157 (321)
Q Consensus 81 ---~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~ 157 (321)
++.+.+++ ..+-..+|++-..+.-. ...++-.|+||||+|...+. .. ..|+..+..|
T Consensus 87 ~~d~~eidaas------~~~v~~iR~l~~~~~~~-p~~~~~kV~iIDE~~~ls~~-----------a~-naLLk~LEep- 146 (509)
T PRK14958 87 FPDLFEVDAAS------RTKVEDTRELLDNIPYA-PTKGRFKVYLIDEVHMLSGH-----------SF-NALLKTLEEP- 146 (509)
T ss_pred CceEEEEcccc------cCCHHHHHHHHHHHhhc-cccCCcEEEEEEChHhcCHH-----------HH-HHHHHHHhcc-
Confidence 44455432 12334577766655322 22456689999999987421 12 2455555532
Q ss_pred ccccCccccccCCCCCccEEEeeCCCCCccccCCCCCCCcceecC-CCHHHHHHHHHHHhhcCCC--CHHHHHHhhhCCC
Q 020787 158 RVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQ-PNLEDILNIVHRMYEKDGI--TKDEVGSIVKTFP 234 (321)
Q Consensus 158 ~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpALlRpGRfDr~i~~-Pd~~~R~~Il~~~~~~~~l--~~~dl~~L~d~f~ 234 (321)
.+.+.+|.+||++..+.+.++- |.-.+-+. ++.++-...++.+++..++ +.+.+..++....
T Consensus 147 -------------p~~~~fIlattd~~kl~~tI~S--Rc~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s~ 211 (509)
T PRK14958 147 -------------PSHVKFILATTDHHKLPVTVLS--RCLQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAAN 211 (509)
T ss_pred -------------CCCeEEEEEECChHhchHHHHH--HhhhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 3468888888999999988655 54333332 4566666666666665543 4444555554443
Q ss_pred C
Q 020787 235 N 235 (321)
Q Consensus 235 g 235 (321)
|
T Consensus 212 G 212 (509)
T PRK14958 212 G 212 (509)
T ss_pred C
Confidence 3
No 113
>PRK05642 DNA replication initiation factor; Validated
Probab=99.14 E-value=3e-10 Score=104.36 Aligned_cols=141 Identities=16% Similarity=0.209 Sum_probs=90.9
Q ss_pred HhccccCCCCcHHHHHHHHHHHc---CCceEEeeccccccccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeecccccCC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM---GIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLG 131 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~---g~~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~~ 131 (321)
.+.||||+|||||.|++|+++++ +...+.++..++.+.. + .+.+.|+ ...+|+||||+...+
T Consensus 47 ~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~~----~-~~~~~~~----------~~d~LiiDDi~~~~~ 111 (234)
T PRK05642 47 LIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRG----P-ELLDNLE----------QYELVCLDDLDVIAG 111 (234)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhhh----H-HHHHhhh----------hCCEEEEechhhhcC
Confidence 46899999999999999998753 6788889998887531 1 1222222 235889999999865
Q ss_pred CCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCC-CCCc---cccCCCCCCCcc--e--ecCC
Q 020787 132 RFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGND-FSTI---YAPLIRDGRMEK--F--YWQP 203 (321)
Q Consensus 132 r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNr-p~~L---DpALlRpGRfDr--~--i~~P 203 (321)
+.. ....|.++++.- . .++.++|+|+|. |..+ .|.|+- ||-- . +..|
T Consensus 112 ~~~----------~~~~Lf~l~n~~---------~----~~g~~ilits~~~p~~l~~~~~~L~S--Rl~~gl~~~l~~~ 166 (234)
T PRK05642 112 KAD----------WEEALFHLFNRL---------R----DSGRRLLLAASKSPRELPIKLPDLKS--RLTLALVFQMRGL 166 (234)
T ss_pred ChH----------HHHHHHHHHHHH---------H----hcCCEEEEeCCCCHHHcCccCccHHH--HHhcCeeeecCCC
Confidence 421 112344444410 0 123456666554 4433 455554 6543 1 2247
Q ss_pred CHHHHHHHHHHHhhcC--CCCHHHHHHhhhCCCC
Q 020787 204 NLEDILNIVHRMYEKD--GITKDEVGSIVKTFPN 235 (321)
Q Consensus 204 d~~~R~~Il~~~~~~~--~l~~~dl~~L~d~f~g 235 (321)
+.++|..|++...... .++.+-+..|+..+++
T Consensus 167 ~~e~~~~il~~ka~~~~~~l~~ev~~~L~~~~~~ 200 (234)
T PRK05642 167 SDEDKLRALQLRASRRGLHLTDEVGHFILTRGTR 200 (234)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC
Confidence 9999999998655544 4678888888887776
No 114
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.13 E-value=3.7e-10 Score=108.93 Aligned_cols=156 Identities=19% Similarity=0.217 Sum_probs=96.6
Q ss_pred hHhccccCCCCcHHHHHHHHHHHcCCceEEeeccccccccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeecccccCCCC
Q 020787 54 ASLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRF 133 (321)
Q Consensus 54 ~iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~~r~ 133 (321)
|-++||||||.|||+||..+|+|||+++-..||+-|+.+ |+=. .++.. -..-.|||||||.++.+-
T Consensus 53 DHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK~--gDla----aiLt~-------Le~~DVLFIDEIHrl~~~- 118 (332)
T COG2255 53 DHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEKP--GDLA----AILTN-------LEEGDVLFIDEIHRLSPA- 118 (332)
T ss_pred CeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccCh--hhHH----HHHhc-------CCcCCeEEEehhhhcChh-
Confidence 488999999999999999999999999999999988742 2222 22211 225689999999997641
Q ss_pred CCCccchhhHHHHHHHHhhcCCC-CccccCccccccCC---CCCccEEEeeCCCCCccccCCCCCCCcceec--CCCHHH
Q 020787 134 GNTQMTVNNQIVVGTLMNLSDNP-TRVSIGQDWRESDI---TNRIPIIFTGNDFSTIYAPLIRDGRMEKFYW--QPNLED 207 (321)
Q Consensus 134 ~~t~~~v~~q~V~~tLl~llD~~-~~vql~g~~~~~~~---~~~V~VIaaTNrp~~LDpALlRpGRfDr~i~--~Pd~~~ 207 (321)
|...|---|.+- -.+-++........ .+.-..|+||.|+-.|-.||+= ||--... .=+.++
T Consensus 119 -----------vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATTr~G~lt~PLrd--RFGi~~rlefY~~~e 185 (332)
T COG2255 119 -----------VEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATTRAGMLTNPLRD--RFGIIQRLEFYTVEE 185 (332)
T ss_pred -----------HHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeeccccccccchhHH--hcCCeeeeecCCHHH
Confidence 222333333210 00111111111000 2344568999999999999986 7765322 235667
Q ss_pred HHHHHHHHhhcC--CCCHHHHHHh---hhCCCCC
Q 020787 208 ILNIVHRMYEKD--GITKDEVGSI---VKTFPNQ 236 (321)
Q Consensus 208 R~~Il~~~~~~~--~l~~~dl~~L---~d~f~gq 236 (321)
-.+|++.--+.. .++.+....+ ..+.|.-
T Consensus 186 L~~Iv~r~a~~l~i~i~~~~a~eIA~rSRGTPRI 219 (332)
T COG2255 186 LEEIVKRSAKILGIEIDEEAALEIARRSRGTPRI 219 (332)
T ss_pred HHHHHHHHHHHhCCCCChHHHHHHHHhccCCcHH
Confidence 778886544433 4555444444 4455543
No 115
>PRK06620 hypothetical protein; Validated
Probab=99.11 E-value=3e-10 Score=103.51 Aligned_cols=138 Identities=16% Similarity=0.249 Sum_probs=83.1
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeeccccccccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeecccccCCCCC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG 134 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~~r~~ 134 (321)
-|.||||||||||+|++++|+..++.++. .... ..+.| ..-.+|+|||||..
T Consensus 46 ~l~l~Gp~G~GKThLl~a~~~~~~~~~~~--~~~~-----------~~~~~----------~~~d~lliDdi~~~----- 97 (214)
T PRK06620 46 TLLIKGPSSSGKTYLTKIWQNLSNAYIIK--DIFF-----------NEEIL----------EKYNAFIIEDIENW----- 97 (214)
T ss_pred eEEEECCCCCCHHHHHHHHHhccCCEEcc--hhhh-----------chhHH----------hcCCEEEEeccccc-----
Confidence 47899999999999999999998875433 1100 01111 13478999999932
Q ss_pred CCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCcc-ccCCCCCCCcc----eecCCCHHHHH
Q 020787 135 NTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIY-APLIRDGRMEK----FYWQPNLEDIL 209 (321)
Q Consensus 135 ~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LD-pALlRpGRfDr----~i~~Pd~~~R~ 209 (321)
+ ...+. .+.|.+. + ..+..||.++..|..+. |+|+= ||.. .+..|+.+.|.
T Consensus 98 --~----~~~lf-~l~N~~~------------e---~g~~ilits~~~p~~l~l~~L~S--Rl~~gl~~~l~~pd~~~~~ 153 (214)
T PRK06620 98 --Q----EPALL-HIFNIIN------------E---KQKYLLLTSSDKSRNFTLPDLSS--RIKSVLSILLNSPDDELIK 153 (214)
T ss_pred --h----HHHHH-HHHHHHH------------h---cCCEEEEEcCCCccccchHHHHH--HHhCCceEeeCCCCHHHHH
Confidence 1 11222 2233222 0 12334444555555421 44442 6663 22349999999
Q ss_pred HHHHHHhhcC--CCCHHHHHHhhhCCCCCcchhhHHH
Q 020787 210 NIVHRMYEKD--GITKDEVGSIVKTFPNQALDFYGAL 244 (321)
Q Consensus 210 ~Il~~~~~~~--~l~~~dl~~L~d~f~gq~idf~gAl 244 (321)
.|++.+.+.. .++.+-+.-|+..+++.--...+++
T Consensus 154 ~~l~k~~~~~~l~l~~ev~~~L~~~~~~d~r~l~~~l 190 (214)
T PRK06620 154 ILIFKHFSISSVTISRQIIDFLLVNLPREYSKIIEIL 190 (214)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHccCCHHHHHHHH
Confidence 9998887755 4778888999988877433334433
No 116
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.10 E-value=5.6e-10 Score=120.39 Aligned_cols=173 Identities=13% Similarity=0.215 Sum_probs=106.8
Q ss_pred HHHHhhhhhhccCccccchhhhh---------HhccccCCCCcHHHHHHHHHHHcCCceEEee-----------------
Q 020787 32 RQKVTRSFEYLQGDYYIAPVFMA---------SLCIWGGKGQGKSFQTELIFQAMGIEPVIMS----------------- 85 (321)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~p~f~~---------iLgL~GPPGcGKTllaravA~e~g~~~i~vs----------------- 85 (321)
|.+--++|+.+.|-=+|-..|.. .++||||||||||++||++|+.+.+.-. ..
T Consensus 8 eKyRP~tFddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~-~~~~pCg~C~sC~~i~~g~ 86 (944)
T PRK14949 8 RKWRPATFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQG-VTATPCGVCSSCVEIAQGR 86 (944)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCccC-CCCCCCCCchHHHHHhcCC
Confidence 33344677777776555554443 5689999999999999999999988511 00
Q ss_pred ccccccccCC---CcHHHHHHHHHHHHhhhhhcCCceEEEeecccccCCCCCCCccchhhHHHHHHHHhhcCCCCccccC
Q 020787 86 AGELESERAG---EPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIG 162 (321)
Q Consensus 86 ~~eL~s~~~G---Eser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~ 162 (321)
..+++. +-+ .+-..||++-..+...- ..++-.|+||||+|.+-. .....|+..|..|
T Consensus 87 ~~DviE-idAas~~kVDdIReLie~v~~~P-~~gk~KViIIDEAh~LT~------------eAqNALLKtLEEP------ 146 (944)
T PRK14949 87 FVDLIE-VDAASRTKVDDTRELLDNVQYRP-SRGRFKVYLIDEVHMLSR------------SSFNALLKTLEEP------ 146 (944)
T ss_pred CceEEE-eccccccCHHHHHHHHHHHHhhh-hcCCcEEEEEechHhcCH------------HHHHHHHHHHhcc------
Confidence 011110 111 12345777776654321 235667999999999731 1223455555522
Q ss_pred ccccccCCCCCccEEEeeCCCCCccccCCCCCCCcceecC-CCHHHHHHHHHHHhhcCCC--CHHHHHHhhhCCCC
Q 020787 163 QDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQ-PNLEDILNIVHRMYEKDGI--TKDEVGSIVKTFPN 235 (321)
Q Consensus 163 g~~~~~~~~~~V~VIaaTNrp~~LDpALlRpGRfDr~i~~-Pd~~~R~~Il~~~~~~~~l--~~~dl~~L~d~f~g 235 (321)
..++.+|.+||.+..|.++++- |.-++-+- ++.++-.+.|+.++...++ +.+.+..|+....|
T Consensus 147 --------P~~vrFILaTTe~~kLl~TIlS--RCq~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~G 212 (944)
T PRK14949 147 --------PEHVKFLLATTDPQKLPVTVLS--RCLQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANG 212 (944)
T ss_pred --------CCCeEEEEECCCchhchHHHHH--hheEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 3467788888889999888766 65443333 5788888888777765544 44455555544333
No 117
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.10 E-value=5.4e-10 Score=100.43 Aligned_cols=140 Identities=14% Similarity=0.213 Sum_probs=86.1
Q ss_pred HhccccCCCCcHHHHHHHHHHHc---CCceEEeeccccccccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeecccccCC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM---GIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLG 131 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~---g~~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~~ 131 (321)
.+.||||||||||.+|+++++++ +..++.+++.++... +. . .....+|+|||+|.+.+
T Consensus 44 ~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~~------------~~----~---~~~~~~liiDdi~~l~~ 104 (227)
T PRK08903 44 FFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLLA------------FD----F---DPEAELYAVDDVERLDD 104 (227)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHHH------------Hh----h---cccCCEEEEeChhhcCc
Confidence 57899999999999999999875 678888888776421 11 1 12467899999998632
Q ss_pred CCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCC---CccccCCCCCCCc--ceecC--CC
Q 020787 132 RFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFS---TIYAPLIRDGRME--KFYWQ--PN 204 (321)
Q Consensus 132 r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~---~LDpALlRpGRfD--r~i~~--Pd 204 (321)
. .+ ..|..+++.. .. .....||.|++.+. .+.+.|+- ||. ..+.+ |+
T Consensus 105 ~---------~~---~~L~~~~~~~---------~~---~~~~~vl~~~~~~~~~~~l~~~L~s--r~~~~~~i~l~pl~ 158 (227)
T PRK08903 105 A---------QQ---IALFNLFNRV---------RA---HGQGALLVAGPAAPLALPLREDLRT--RLGWGLVYELKPLS 158 (227)
T ss_pred h---------HH---HHHHHHHHHH---------HH---cCCcEEEEeCCCCHHhCCCCHHHHH--HHhcCeEEEecCCC
Confidence 1 11 2233333310 00 11223555555332 12333331 443 23443 67
Q ss_pred HHHHHHHHHHHhhcC--CCCHHHHHHhhhCCCCCcch
Q 020787 205 LEDILNIVHRMYEKD--GITKDEVGSIVKTFPNQALD 239 (321)
Q Consensus 205 ~~~R~~Il~~~~~~~--~l~~~dl~~L~d~f~gq~id 239 (321)
.+++..+++.+..+. .++.+-+..|+..++|-.-.
T Consensus 159 ~~~~~~~l~~~~~~~~v~l~~~al~~L~~~~~gn~~~ 195 (227)
T PRK08903 159 DADKIAALKAAAAERGLQLADEVPDYLLTHFRRDMPS 195 (227)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHHH
Confidence 778888888776654 56788889999877774333
No 118
>PHA02244 ATPase-like protein
Probab=99.09 E-value=4e-10 Score=111.79 Aligned_cols=120 Identities=22% Similarity=0.297 Sum_probs=74.5
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeecc----ccccccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeecccccC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAG----ELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGL 130 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~----eL~s~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~ 130 (321)
-++|+||||||||++|+++|..++.+|+.+++- ++. .+........-..|-+|.+ ...+|+|||||...
T Consensus 121 PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~-G~i~~~g~~~dgpLl~A~~------~GgvLiLDEId~a~ 193 (383)
T PHA02244 121 PVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELK-GFIDANGKFHETPFYEAFK------KGGLFFIDEIDASI 193 (383)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhc-ccccccccccchHHHHHhh------cCCEEEEeCcCcCC
Confidence 578899999999999999999999999999842 111 1111111111122333321 57899999999875
Q ss_pred CCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCC-----------CCccccCCCCCCCcc
Q 020787 131 GRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDF-----------STIYAPLIRDGRMEK 198 (321)
Q Consensus 131 ~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp-----------~~LDpALlRpGRfDr 198 (321)
+ .+...|..++++- .+.+.|... ...++.-+|+|+|.+ ..|++|++- ||-.
T Consensus 194 p------------~vq~~L~~lLd~r-~l~l~g~~i--~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllD--RFv~ 255 (383)
T PHA02244 194 P------------EALIIINSAIANK-FFDFADERV--TAHEDFRVISAGNTLGKGADHIYVARNKIDGATLD--RFAP 255 (383)
T ss_pred H------------HHHHHHHHHhccC-eEEecCcEE--ecCCCEEEEEeeCCCccCcccccCCCcccCHHHHh--hcEE
Confidence 3 2233455555532 233333211 113578899999974 567777766 6643
No 119
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.08 E-value=8.2e-11 Score=107.32 Aligned_cols=154 Identities=25% Similarity=0.365 Sum_probs=92.8
Q ss_pred HhccccCCCCcHHHHHHHHHHHc-----CCceEEeeccccccccC-----CCcHHHHHHHHHHHHhhhhhcCCceEEEee
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM-----GIEPVIMSAGELESERA-----GEPGKLIRERYRTASQVVQNQGKMSCLMIN 124 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~-----g~~~i~vs~~eL~s~~~-----GEser~IR~~F~~A~~~~~~~gaPcILFID 124 (321)
.|.||||+|+|||.|..|+++++ +..++.+++.++...++ ++.+. +++.|+ ...+|+||
T Consensus 36 ~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~-~~~~~~----------~~DlL~iD 104 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIEE-FKDRLR----------SADLLIID 104 (219)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHH-HHHHHC----------TSSEEEEE
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccchh-hhhhhh----------cCCEEEEe
Confidence 36799999999999999999874 67788999888775432 22221 222221 46788999
Q ss_pred cccccCCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCC-CCccccCCCC---CCCcc--
Q 020787 125 DIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDF-STIYAPLIRD---GRMEK-- 198 (321)
Q Consensus 125 EIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp-~~LDpALlRp---GRfDr-- 198 (321)
+||.+.++ +.....|..+.+. +. .++.+||+|++++ +.|.. +.| =||--
T Consensus 105 Di~~l~~~----------~~~q~~lf~l~n~---------~~----~~~k~li~ts~~~P~~l~~--~~~~L~SRl~~Gl 159 (219)
T PF00308_consen 105 DIQFLAGK----------QRTQEELFHLFNR---------LI----ESGKQLILTSDRPPSELSG--LLPDLRSRLSWGL 159 (219)
T ss_dssp TGGGGTTH----------HHHHHHHHHHHHH---------HH----HTTSEEEEEESS-TTTTTT--S-HHHHHHHHCSE
T ss_pred cchhhcCc----------hHHHHHHHHHHHH---------HH----hhCCeEEEEeCCCCccccc--cChhhhhhHhhcc
Confidence 99998753 1233455555552 11 1345677777554 55542 222 13332
Q ss_pred e--ecCCCHHHHHHHHHHHhhcCC--CCHHHHHHhhhCCCCCcchhhHHH
Q 020787 199 F--YWQPNLEDILNIVHRMYEKDG--ITKDEVGSIVKTFPNQALDFYGAL 244 (321)
Q Consensus 199 ~--i~~Pd~~~R~~Il~~~~~~~~--l~~~dl~~L~d~f~gq~idf~gAl 244 (321)
. +..|+.++|..|++.+....+ ++.+-+.-|+..+++--=...|+|
T Consensus 160 ~~~l~~pd~~~r~~il~~~a~~~~~~l~~~v~~~l~~~~~~~~r~L~~~l 209 (219)
T PF00308_consen 160 VVELQPPDDEDRRRILQKKAKERGIELPEEVIEYLARRFRRDVRELEGAL 209 (219)
T ss_dssp EEEE----HHHHHHHHHHHHHHTT--S-HHHHHHHHHHTTSSHHHHHHHH
T ss_pred hhhcCCCCHHHHHHHHHHHHHHhCCCCcHHHHHHHHHhhcCCHHHHHHHH
Confidence 1 124999999999998877665 667777888887776322334443
No 120
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.07 E-value=9e-10 Score=114.74 Aligned_cols=170 Identities=16% Similarity=0.293 Sum_probs=110.2
Q ss_pred HHHHHhhhhhhccCccccchhhhh---------HhccccCCCCcHHHHHHHHHHHcCC----------------------
Q 020787 31 YRQKVTRSFEYLQGDYYIAPVFMA---------SLCIWGGKGQGKSFQTELIFQAMGI---------------------- 79 (321)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~p~f~~---------iLgL~GPPGcGKTllaravA~e~g~---------------------- 79 (321)
|+-+-.++|+.+.|-=.+-..|.. .+++|||||||||++|+++|+.+.+
T Consensus 7 ~~KyRP~~F~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~~~~ 86 (605)
T PRK05896 7 YRKYRPHNFKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINTNQ 86 (605)
T ss_pred HHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHHcCC
Confidence 344445666666654444333333 6899999999999999999999865
Q ss_pred --ceEEeeccccccccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeecccccCCCCCCCccchhhHHHHHHHHhhcCCCC
Q 020787 80 --EPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPT 157 (321)
Q Consensus 80 --~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~ 157 (321)
.++.+++++- -+-..||++...+.... ..+.-.|++|||+|.+.. .....|+..+..|
T Consensus 87 h~DiieIdaas~------igVd~IReIi~~~~~~P-~~~~~KVIIIDEad~Lt~------------~A~NaLLKtLEEP- 146 (605)
T PRK05896 87 SVDIVELDAASN------NGVDEIRNIIDNINYLP-TTFKYKVYIIDEAHMLST------------SAWNALLKTLEEP- 146 (605)
T ss_pred CCceEEeccccc------cCHHHHHHHHHHHHhch-hhCCcEEEEEechHhCCH------------HHHHHHHHHHHhC-
Confidence 2233333211 12335788877665321 123446999999997631 1123566666643
Q ss_pred ccccCccccccCCCCCccEEEeeCCCCCccccCCCCCCCcceec-CCCHHHHHHHHHHHhhcCC--CCHHHHHHhhhCCC
Q 020787 158 RVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYW-QPNLEDILNIVHRMYEKDG--ITKDEVGSIVKTFP 234 (321)
Q Consensus 158 ~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpALlRpGRfDr~i~-~Pd~~~R~~Il~~~~~~~~--l~~~dl~~L~d~f~ 234 (321)
...+.+|.+|+.+..|.++++. |...+-+ .|+.++-...|+..++..+ ++.+.+..++....
T Consensus 147 -------------p~~tvfIL~Tt~~~KLl~TI~S--Rcq~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS~ 211 (605)
T PRK05896 147 -------------PKHVVFIFATTEFQKIPLTIIS--RCQRYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLAD 211 (605)
T ss_pred -------------CCcEEEEEECCChHhhhHHHHh--hhhhcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 2467777788889999999887 5544333 3788888888888776654 67777777766554
Q ss_pred C
Q 020787 235 N 235 (321)
Q Consensus 235 g 235 (321)
|
T Consensus 212 G 212 (605)
T PRK05896 212 G 212 (605)
T ss_pred C
Confidence 4
No 121
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.06 E-value=1.5e-09 Score=114.03 Aligned_cols=169 Identities=14% Similarity=0.257 Sum_probs=107.6
Q ss_pred HHHHhhhhhhccCccccchhhhh---------HhccccCCCCcHHHHHHHHHHHcCCc----------------------
Q 020787 32 RQKVTRSFEYLQGDYYIAPVFMA---------SLCIWGGKGQGKSFQTELIFQAMGIE---------------------- 80 (321)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~p~f~~---------iLgL~GPPGcGKTllaravA~e~g~~---------------------- 80 (321)
|.+--++|+.+.|-=++-..+.. .++||||||||||++|+++|+.+.+.
T Consensus 8 ~KyRP~~f~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~g~~ 87 (647)
T PRK07994 8 RKWRPQTFAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQGRF 87 (647)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHcCCC
Confidence 33445778777776555544443 47999999999999999999999884
Q ss_pred --eEEeeccccccccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeecccccCCCCCCCccchhhHHHHHHHHhhcCCCCc
Q 020787 81 --PVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTR 158 (321)
Q Consensus 81 --~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~ 158 (321)
++.+++++ . .+-..||++-..+... ...|.--|+||||+|.+.. ... ..||..+..|
T Consensus 88 ~D~ieidaas----~--~~VddiR~li~~~~~~-p~~g~~KV~IIDEah~Ls~-----------~a~-NALLKtLEEP-- 146 (647)
T PRK07994 88 VDLIEIDAAS----R--TKVEDTRELLDNVQYA-PARGRFKVYLIDEVHMLSR-----------HSF-NALLKTLEEP-- 146 (647)
T ss_pred CCceeecccc----c--CCHHHHHHHHHHHHhh-hhcCCCEEEEEechHhCCH-----------HHH-HHHHHHHHcC--
Confidence 23333321 0 1234577776655422 1246677999999998742 112 2355554422
Q ss_pred cccCccccccCCCCCccEEEeeCCCCCccccCCCCCCCcceec-CCCHHHHHHHHHHHhhcCCC--CHHHHHHhhhCCCC
Q 020787 159 VSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYW-QPNLEDILNIVHRMYEKDGI--TKDEVGSIVKTFPN 235 (321)
Q Consensus 159 vql~g~~~~~~~~~~V~VIaaTNrp~~LDpALlRpGRfDr~i~-~Pd~~~R~~Il~~~~~~~~l--~~~dl~~L~d~f~g 235 (321)
..++.+|.+||++..|.+.++= |.-++.+ .++.++-...|+.+++..++ +...+..|+....|
T Consensus 147 ------------p~~v~FIL~Tt~~~kLl~TI~S--RC~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~G 212 (647)
T PRK07994 147 ------------PEHVKFLLATTDPQKLPVTILS--RCLQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADG 212 (647)
T ss_pred ------------CCCeEEEEecCCccccchHHHh--hheEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 3578888888999999988665 6544333 36788888888877765554 44545555543333
No 122
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.06 E-value=1.1e-09 Score=112.17 Aligned_cols=165 Identities=15% Similarity=0.275 Sum_probs=104.7
Q ss_pred hhhhhhccCccccchhhhh---------HhccccCCCCcHHHHHHHHHHHcCCc------------------------eE
Q 020787 36 TRSFEYLQGDYYIAPVFMA---------SLCIWGGKGQGKSFQTELIFQAMGIE------------------------PV 82 (321)
Q Consensus 36 ~~~~~~~~~~~~~~p~f~~---------iLgL~GPPGcGKTllaravA~e~g~~------------------------~i 82 (321)
-++|+.+.|-=++-..+.. .++||||||||||++|+++|+.+.+. ++
T Consensus 12 P~~f~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ 91 (527)
T PRK14969 12 PKSFSELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLI 91 (527)
T ss_pred CCcHHHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCcee
Confidence 4677777766555444433 57899999999999999999999873 12
Q ss_pred EeeccccccccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeecccccCCCCCCCccchhhHHHHHHHHhhcCCCCccccC
Q 020787 83 IMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIG 162 (321)
Q Consensus 83 ~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~ 162 (321)
.+.+++ .-+-..||++...+... ...+...|+||||+|.... ... ..|+..+.+|
T Consensus 92 ei~~~~------~~~vd~ir~l~~~~~~~-p~~~~~kVvIIDEad~ls~-----------~a~-naLLK~LEep------ 146 (527)
T PRK14969 92 EVDAAS------NTQVDAMRELLDNAQYA-PTRGRFKVYIIDEVHMLSK-----------SAF-NAMLKTLEEP------ 146 (527)
T ss_pred Eeeccc------cCCHHHHHHHHHHHhhC-cccCCceEEEEcCcccCCH-----------HHH-HHHHHHHhCC------
Confidence 222211 12345688888776432 2245678999999987632 112 2355555532
Q ss_pred ccccccCCCCCccEEEeeCCCCCccccCCCCCCCcceec-CCCHHHHHHHHHHHhhcCCC--CHHHHHHhhhCCCC
Q 020787 163 QDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYW-QPNLEDILNIVHRMYEKDGI--TKDEVGSIVKTFPN 235 (321)
Q Consensus 163 g~~~~~~~~~~V~VIaaTNrp~~LDpALlRpGRfDr~i~-~Pd~~~R~~Il~~~~~~~~l--~~~dl~~L~d~f~g 235 (321)
...+.+|.+||+++.+.+.++- |.-.+-+ .|+.++-.+.|+.+++..++ +...+..|+....|
T Consensus 147 --------p~~~~fIL~t~d~~kil~tI~S--Rc~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~G 212 (527)
T PRK14969 147 --------PEHVKFILATTDPQKIPVTVLS--RCLQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAG 212 (527)
T ss_pred --------CCCEEEEEEeCChhhCchhHHH--HHHHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 3478888888889988887543 4422222 36788877778777766554 45555665554433
No 123
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.06 E-value=1.1e-09 Score=113.13 Aligned_cols=170 Identities=14% Similarity=0.296 Sum_probs=106.6
Q ss_pred HHHHHhhhhhhccCccccchhhhh---------HhccccCCCCcHHHHHHHHHHHcCCc---------------------
Q 020787 31 YRQKVTRSFEYLQGDYYIAPVFMA---------SLCIWGGKGQGKSFQTELIFQAMGIE--------------------- 80 (321)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~p~f~~---------iLgL~GPPGcGKTllaravA~e~g~~--------------------- 80 (321)
||.+--++|+.+.|-=++--.+.. .++||||||||||++|+++|+.+.+.
T Consensus 7 ~~k~RP~~f~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~ 86 (576)
T PRK14965 7 ARKYRPQTFSDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGR 86 (576)
T ss_pred HHHhCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCC
Confidence 344445677777765555444433 57899999999999999999998763
Q ss_pred ---eEEeeccccccccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeecccccCCCCCCCccchhhHHHHHHHHhhcCCCC
Q 020787 81 ---PVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPT 157 (321)
Q Consensus 81 ---~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~ 157 (321)
++.+.+++ ..+-..||++...+... ...+.-.|++|||+|.... . -...|+..|..|
T Consensus 87 ~~d~~eid~~s------~~~v~~ir~l~~~~~~~-p~~~~~KVvIIdev~~Lt~-----------~-a~naLLk~LEep- 146 (576)
T PRK14965 87 SVDVFEIDGAS------NTGVDDIRELRENVKYL-PSRSRYKIFIIDEVHMLST-----------N-AFNALLKTLEEP- 146 (576)
T ss_pred CCCeeeeeccC------ccCHHHHHHHHHHHHhc-cccCCceEEEEEChhhCCH-----------H-HHHHHHHHHHcC-
Confidence 33333321 12345678887666422 1123456999999987642 1 123466666633
Q ss_pred ccccCccccccCCCCCccEEEeeCCCCCccccCCCCCCCcceec-CCCHHHHHHHHHHHhhcCC--CCHHHHHHhhhCCC
Q 020787 158 RVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYW-QPNLEDILNIVHRMYEKDG--ITKDEVGSIVKTFP 234 (321)
Q Consensus 158 ~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpALlRpGRfDr~i~-~Pd~~~R~~Il~~~~~~~~--l~~~dl~~L~d~f~ 234 (321)
..++.+|.+||.++.|.++++- |.-.+-+ .++.++-...|+.+++..+ ++.+.+..|+....
T Consensus 147 -------------p~~~~fIl~t~~~~kl~~tI~S--Rc~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a~ 211 (576)
T PRK14965 147 -------------PPHVKFIFATTEPHKVPITILS--RCQRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGD 211 (576)
T ss_pred -------------CCCeEEEEEeCChhhhhHHHHH--hhhhhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcC
Confidence 3478888888999999999774 3333222 3566776777776666554 44555555554443
Q ss_pred C
Q 020787 235 N 235 (321)
Q Consensus 235 g 235 (321)
|
T Consensus 212 G 212 (576)
T PRK14965 212 G 212 (576)
T ss_pred C
Confidence 3
No 124
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.05 E-value=1.6e-09 Score=116.35 Aligned_cols=169 Identities=12% Similarity=0.203 Sum_probs=103.9
Q ss_pred HHHHhhhhhhccCccccchhhhh---------HhccccCCCCcHHHHHHHHHHHcCCc----------------------
Q 020787 32 RQKVTRSFEYLQGDYYIAPVFMA---------SLCIWGGKGQGKSFQTELIFQAMGIE---------------------- 80 (321)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~p~f~~---------iLgL~GPPGcGKTllaravA~e~g~~---------------------- 80 (321)
+.+--++|+.|.|-=++-..+.. .|+||||||||||++|+++|+.+.|.
T Consensus 7 ~KyRP~~f~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~ 86 (824)
T PRK07764 7 RRYRPATFAEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGP 86 (824)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCC
Confidence 33344566666654444333322 68999999999999999999999862
Q ss_pred ----eEEeeccccccccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeecccccCCCCCCCccchhhHHHHHHHHhhcCCC
Q 020787 81 ----PVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNP 156 (321)
Q Consensus 81 ----~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~ 156 (321)
++.+++++.. +=..||++=+.+. .....+.-.|+||||+|.+.. .-...|+..+.+|
T Consensus 87 ~~~dv~eidaas~~------~Vd~iR~l~~~~~-~~p~~~~~KV~IIDEad~lt~------------~a~NaLLK~LEEp 147 (824)
T PRK07764 87 GSLDVTEIDAASHG------GVDDARELRERAF-FAPAESRYKIFIIDEAHMVTP------------QGFNALLKIVEEP 147 (824)
T ss_pred CCCcEEEecccccC------CHHHHHHHHHHHH-hchhcCCceEEEEechhhcCH------------HHHHHHHHHHhCC
Confidence 2233322110 1234555433332 111245778999999999742 1223577777743
Q ss_pred CccccCccccccCCCCCccEEEeeCCCCCccccCCCCCCCcceec-CCCHHHHHHHHHHHhhcCCC--CHHHHHHhhhCC
Q 020787 157 TRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYW-QPNLEDILNIVHRMYEKDGI--TKDEVGSIVKTF 233 (321)
Q Consensus 157 ~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpALlRpGRfDr~i~-~Pd~~~R~~Il~~~~~~~~l--~~~dl~~L~d~f 233 (321)
...+.+|++||.++.|.++|+= |.-.+-+ .++.++-.++|+.++++.++ +.+.+..|+...
T Consensus 148 --------------P~~~~fIl~tt~~~kLl~TIrS--Rc~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~s 211 (824)
T PRK07764 148 --------------PEHLKFIFATTEPDKVIGTIRS--RTHHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAG 211 (824)
T ss_pred --------------CCCeEEEEEeCChhhhhHHHHh--heeEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 2467777778889999988765 4333223 36778888888888776655 445555555444
Q ss_pred CC
Q 020787 234 PN 235 (321)
Q Consensus 234 ~g 235 (321)
.|
T Consensus 212 gG 213 (824)
T PRK07764 212 GG 213 (824)
T ss_pred CC
Confidence 44
No 125
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.04 E-value=1.5e-09 Score=114.61 Aligned_cols=157 Identities=22% Similarity=0.329 Sum_probs=105.2
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeeccccccccCCCcHHHHHHHHHHHHhhhhhc---CCceEEEeecccccCC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQ---GKMSCLMINDIDAGLG 131 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~~---gaPcILFIDEIDAg~~ 131 (321)
||+|+||||-|||+||+-||+++|-..+-|++++=- +...+++.-.-|.++-.+. ++|.||+|||||-.-+
T Consensus 328 ilLL~GppGlGKTTLAHViAkqaGYsVvEINASDeR------t~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~~ 401 (877)
T KOG1969|consen 328 ILLLCGPPGLGKTTLAHVIAKQAGYSVVEINASDER------TAPMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAPR 401 (877)
T ss_pred eEEeecCCCCChhHHHHHHHHhcCceEEEecccccc------cHHHHHHHHHHHHhhccccccCCCcceEEEecccCCcH
Confidence 999999999999999999999999999999999743 4788898888888776544 7899999999997541
Q ss_pred CCCCCccchhhHHHHHHHHhhcC--CCCccccCccccccCC--------CCCccEEEeeCCCCCccccCCCCCCCc-ce-
Q 020787 132 RFGNTQMTVNNQIVVGTLMNLSD--NPTRVSIGQDWRESDI--------TNRIPIIFTGNDFSTIYAPLIRDGRME-KF- 199 (321)
Q Consensus 132 r~~~t~~~v~~q~V~~tLl~llD--~~~~vql~g~~~~~~~--------~~~V~VIaaTNrp~~LDpALlRpGRfD-r~- 199 (321)
..+.+++.++. ++ |.-|.-+..+. .=.-|||+.+|+ ||+|-+||=|== ..
T Consensus 402 ------------~~Vdvilslv~a~~k---~~~Gkq~~~~~~rkkkr~~~L~RPIICICNd---LYaPaLR~Lr~~A~ii 463 (877)
T KOG1969|consen 402 ------------AAVDVILSLVKATNK---QATGKQAKKDKKRKKKRSKLLTRPIICICND---LYAPALRPLRPFAEII 463 (877)
T ss_pred ------------HHHHHHHHHHHhhcc---hhhcCcccchhhhhhhccccccCCEEEEecC---ccchhhhhcccceEEE
Confidence 22334444432 32 22221111110 013699999994 788888876633 22
Q ss_pred ecCCCHHHHH-HHHHHHhhcC--CCCHHHHHHhhhCCCC
Q 020787 200 YWQPNLEDIL-NIVHRMYEKD--GITKDEVGSIVKTFPN 235 (321)
Q Consensus 200 i~~Pd~~~R~-~Il~~~~~~~--~l~~~dl~~L~d~f~g 235 (321)
+++|....|+ +=|+.++... .++...+..|++-+.+
T Consensus 464 ~f~~p~~s~Lv~RL~~IC~rE~mr~d~~aL~~L~el~~~ 502 (877)
T KOG1969|consen 464 AFVPPSQSRLVERLNEICHRENMRADSKALNALCELTQN 502 (877)
T ss_pred EecCCChhHHHHHHHHHHhhhcCCCCHHHHHHHHHHhcc
Confidence 2456555544 3344444443 4566677777654443
No 126
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=6.2e-10 Score=108.98 Aligned_cols=101 Identities=18% Similarity=0.239 Sum_probs=79.8
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeecccccc-ccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeecccccCCCC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELES-ERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRF 133 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s-~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~~r~ 133 (321)
-.+|-||.|||||+||+.+|+.++++|-.-.+..|.. +|+||-=.+|-...-.|.+.--.+..--||+|||||.++.+.
T Consensus 99 NILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIarkS 178 (408)
T COG1219 99 NILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKS 178 (408)
T ss_pred cEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccC
Confidence 4567799999999999999999999999999999865 599998777665555554432223456799999999999877
Q ss_pred CCCc--cchhhHHHHHHHHhhcCC
Q 020787 134 GNTQ--MTVNNQIVVGTLMNLSDN 155 (321)
Q Consensus 134 ~~t~--~~v~~q~V~~tLl~llD~ 155 (321)
++.+ .+|...=|++.||.++.|
T Consensus 179 eN~SITRDVSGEGVQQALLKiiEG 202 (408)
T COG1219 179 ENPSITRDVSGEGVQQALLKIIEG 202 (408)
T ss_pred CCCCcccccCchHHHHHHHHHHcC
Confidence 6544 346667788999999975
No 127
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.04 E-value=1.8e-09 Score=109.78 Aligned_cols=152 Identities=16% Similarity=0.305 Sum_probs=93.6
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCc-e------------EEeec---cccc--cccCCCcHHHHHHHHHHHHhhhhhcC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIE-P------------VIMSA---GELE--SERAGEPGKLIRERYRTASQVVQNQG 116 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~-~------------i~vs~---~eL~--s~~~GEser~IR~~F~~A~~~~~~~g 116 (321)
.++||||||||||++|+++|+.+.+. . ..+.+ ++++ +.-...+-..+|++-+.+... ...+
T Consensus 40 ayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~-P~~~ 118 (486)
T PRK14953 40 AYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIEIDAASNRGIDDIRALRDAVSYT-PIKG 118 (486)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEEEeCccCCCHHHHHHHHHHHHhC-cccC
Confidence 57899999999999999999998751 0 00111 1111 100112234467765555432 2246
Q ss_pred CceEEEeecccccCCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccccCCCCCCC
Q 020787 117 KMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRM 196 (321)
Q Consensus 117 aPcILFIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpALlRpGRf 196 (321)
...|++|||+|.... ... ..|+..+.+| ...+.+|.+||+++.|.+++.. |.
T Consensus 119 ~~KVvIIDEad~Lt~-----------~a~-naLLk~LEep--------------p~~~v~Il~tt~~~kl~~tI~S--Rc 170 (486)
T PRK14953 119 KYKVYIIDEAHMLTK-----------EAF-NALLKTLEEP--------------PPRTIFILCTTEYDKIPPTILS--RC 170 (486)
T ss_pred CeeEEEEEChhhcCH-----------HHH-HHHHHHHhcC--------------CCCeEEEEEECCHHHHHHHHHH--hc
Confidence 778999999997631 112 2455555533 2356666677889999988876 44
Q ss_pred cceec-CCCHHHHHHHHHHHhhcCCC--CHHHHHHhhhCCCC
Q 020787 197 EKFYW-QPNLEDILNIVHRMYEKDGI--TKDEVGSIVKTFPN 235 (321)
Q Consensus 197 Dr~i~-~Pd~~~R~~Il~~~~~~~~l--~~~dl~~L~d~f~g 235 (321)
-+.-+ .|+.++...+++.+++..++ +.+.+..|+....|
T Consensus 171 ~~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~G 212 (486)
T PRK14953 171 QRFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEG 212 (486)
T ss_pred eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 44333 37889999999888776654 44666666654444
No 128
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.04 E-value=2.4e-09 Score=107.71 Aligned_cols=146 Identities=12% Similarity=0.229 Sum_probs=96.6
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCc-------------------------eEEeeccccccccCCCcHHHHHHHHHHHH
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIE-------------------------PVIMSAGELESERAGEPGKLIRERYRTAS 109 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~-------------------------~i~vs~~eL~s~~~GEser~IR~~F~~A~ 109 (321)
.++||||||||||.+|+++|+.+.+. ++.+.+.+- . +-..||++-+...
T Consensus 41 a~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d~~~i~g~~~----~--gid~ir~i~~~l~ 114 (451)
T PRK06305 41 AYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLDVLEIDGASH----R--GIEDIRQINETVL 114 (451)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCceEEeecccc----C--CHHHHHHHHHHHH
Confidence 58899999999999999999988653 333333211 1 1235565444332
Q ss_pred hhhhhcCCceEEEeecccccCCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCcccc
Q 020787 110 QVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAP 189 (321)
Q Consensus 110 ~~~~~~gaPcILFIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpA 189 (321)
-. ...+...|+||||+|.... .....|+..+++| ...+.+|.+||.+..|.++
T Consensus 115 ~~-~~~~~~kvvIIdead~lt~------------~~~n~LLk~lEep--------------~~~~~~Il~t~~~~kl~~t 167 (451)
T PRK06305 115 FT-PSKSRYKIYIIDEVHMLTK------------EAFNSLLKTLEEP--------------PQHVKFFLATTEIHKIPGT 167 (451)
T ss_pred hh-hhcCCCEEEEEecHHhhCH------------HHHHHHHHHhhcC--------------CCCceEEEEeCChHhcchH
Confidence 11 1235789999999987632 1223566666643 2467788888999999999
Q ss_pred CCCCCCCcceec-CCCHHHHHHHHHHHhhcCC--CCHHHHHHhhhCCCC
Q 020787 190 LIRDGRMEKFYW-QPNLEDILNIVHRMYEKDG--ITKDEVGSIVKTFPN 235 (321)
Q Consensus 190 LlRpGRfDr~i~-~Pd~~~R~~Il~~~~~~~~--l~~~dl~~L~d~f~g 235 (321)
|+. |....-+ .|+.++-...|+...++.+ ++.+.+..|+....|
T Consensus 168 I~s--Rc~~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s~g 214 (451)
T PRK06305 168 ILS--RCQKMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQG 214 (451)
T ss_pred HHH--hceEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 887 5544333 3788888888887777655 566677777765544
No 129
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.03 E-value=1.9e-09 Score=112.71 Aligned_cols=146 Identities=12% Similarity=0.212 Sum_probs=93.5
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCc------------------------eEEeeccccccccCCCcHHHHHHHHHHHHh
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIE------------------------PVIMSAGELESERAGEPGKLIRERYRTASQ 110 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~------------------------~i~vs~~eL~s~~~GEser~IR~~F~~A~~ 110 (321)
.++||||||||||++|+++|+.+.+. ++.+++.+- . +=..+|++-+.+.
T Consensus 40 a~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hpDv~eId~a~~----~--~Id~iR~L~~~~~- 112 (624)
T PRK14959 40 AYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVDVVEIDGASN----R--GIDDAKRLKEAIG- 112 (624)
T ss_pred eEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCCceEEEecccc----c--CHHHHHHHHHHHH-
Confidence 68899999999999999999999873 333433210 0 1123444322222
Q ss_pred hhhhcCCceEEEeecccccCCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccccC
Q 020787 111 VVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPL 190 (321)
Q Consensus 111 ~~~~~gaPcILFIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpAL 190 (321)
.....+...||||||+|.... .....|+..+..| ..++.+|.+||.++.|.+.|
T Consensus 113 ~~p~~g~~kVIIIDEad~Lt~------------~a~naLLk~LEEP--------------~~~~ifILaTt~~~kll~TI 166 (624)
T PRK14959 113 YAPMEGRYKVFIIDEAHMLTR------------EAFNALLKTLEEP--------------PARVTFVLATTEPHKFPVTI 166 (624)
T ss_pred hhhhcCCceEEEEEChHhCCH------------HHHHHHHHHhhcc--------------CCCEEEEEecCChhhhhHHH
Confidence 111245678999999998742 1223566666532 34677888888899998887
Q ss_pred CCCCCCcceec-CCCHHHHHHHHHHHhhcCC--CCHHHHHHhhhCCCC
Q 020787 191 IRDGRMEKFYW-QPNLEDILNIVHRMYEKDG--ITKDEVGSIVKTFPN 235 (321)
Q Consensus 191 lRpGRfDr~i~-~Pd~~~R~~Il~~~~~~~~--l~~~dl~~L~d~f~g 235 (321)
+. |.-.+-+ -++.++-..+|+.+++..+ ++.+.+..|+....|
T Consensus 167 ~S--Rcq~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~s~G 212 (624)
T PRK14959 167 VS--RCQHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAG 212 (624)
T ss_pred Hh--hhhccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 65 5543323 3678888888887776654 566666666654433
No 130
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.01 E-value=2.8e-09 Score=111.41 Aligned_cols=166 Identities=12% Similarity=0.237 Sum_probs=105.9
Q ss_pred HhhhhhhccCccccchhhhh---------HhccccCCCCcHHHHHHHHHHHcCCc-------------------------
Q 020787 35 VTRSFEYLQGDYYIAPVFMA---------SLCIWGGKGQGKSFQTELIFQAMGIE------------------------- 80 (321)
Q Consensus 35 ~~~~~~~~~~~~~~~p~f~~---------iLgL~GPPGcGKTllaravA~e~g~~------------------------- 80 (321)
--++|+++.|-=++-..+.. .++||||+|||||++|+++|+.+.+.
T Consensus 11 RP~~f~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C~~i~~g 90 (618)
T PRK14951 11 RPRSFSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQACRDIDSG 90 (618)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHHHHHHcC
Confidence 34677777765444433333 57999999999999999999999862
Q ss_pred ----eEEeeccccccccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeecccccCCCCCCCccchhhHHHHHHHHhhcCCC
Q 020787 81 ----PVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNP 156 (321)
Q Consensus 81 ----~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~ 156 (321)
++.+++++ ..+-..||++-+.+... ...++-.|+||||+|.+.+ .-.+ .|+..+..|
T Consensus 91 ~h~D~~eldaas------~~~Vd~iReli~~~~~~-p~~g~~KV~IIDEvh~Ls~-----------~a~N-aLLKtLEEP 151 (618)
T PRK14951 91 RFVDYTELDAAS------NRGVDEVQQLLEQAVYK-PVQGRFKVFMIDEVHMLTN-----------TAFN-AMLKTLEEP 151 (618)
T ss_pred CCCceeecCccc------ccCHHHHHHHHHHHHhC-cccCCceEEEEEChhhCCH-----------HHHH-HHHHhcccC
Confidence 22332221 11223577777665422 1134456999999998642 1122 355444422
Q ss_pred CccccCccccccCCCCCccEEEeeCCCCCccccCCCCCCCcceec-CCCHHHHHHHHHHHhhcCCC--CHHHHHHhhhCC
Q 020787 157 TRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYW-QPNLEDILNIVHRMYEKDGI--TKDEVGSIVKTF 233 (321)
Q Consensus 157 ~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpALlRpGRfDr~i~-~Pd~~~R~~Il~~~~~~~~l--~~~dl~~L~d~f 233 (321)
...+.+|.+||++..|.+.++- |.-++-+ .++.++..+.|+.++++.++ +.+.+..|+...
T Consensus 152 --------------P~~~~fIL~Ttd~~kil~TIlS--Rc~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~s 215 (618)
T PRK14951 152 --------------PEYLKFVLATTDPQKVPVTVLS--RCLQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAA 215 (618)
T ss_pred --------------CCCeEEEEEECCchhhhHHHHH--hceeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 3467778888889999888555 5544333 36788888888888776654 556677777655
Q ss_pred CC
Q 020787 234 PN 235 (321)
Q Consensus 234 ~g 235 (321)
.|
T Consensus 216 ~G 217 (618)
T PRK14951 216 RG 217 (618)
T ss_pred CC
Confidence 55
No 131
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=7.7e-10 Score=113.81 Aligned_cols=139 Identities=20% Similarity=0.210 Sum_probs=97.1
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeeccccccccCCCcHH--HHHHHHHHHHhhhhhcCCceEEEeecccc----
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGK--LIRERYRTASQVVQNQGKMSCLMINDIDA---- 128 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~~~GEser--~IR~~F~~A~~~~~~~gaPcILFIDEIDA---- 128 (321)
.++|+||||+|||.||--+|...+.+||.+-++|=..++ -|++| .|+.+|+.|. +...+||.+|+|..
T Consensus 540 SvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~-sEsaKc~~i~k~F~DAY-----kS~lsiivvDdiErLiD~ 613 (744)
T KOG0741|consen 540 SVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGL-SESAKCAHIKKIFEDAY-----KSPLSIIVVDDIERLLDY 613 (744)
T ss_pred EEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCc-cHHHHHHHHHHHHHHhh-----cCcceEEEEcchhhhhcc
Confidence 789999999999999999999999999987666544322 25554 5899999998 44899999999987
Q ss_pred --cCCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccccCCCCC---CCcceecCC
Q 020787 129 --GLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDG---RMEKFYWQP 203 (321)
Q Consensus 129 --g~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpALlRpG---RfDr~i~~P 203 (321)
+.||+++ .|.++||-++.- +-+..++..|++||.+.+.|- +-| =|+-.|.+|
T Consensus 614 vpIGPRfSN--------~vlQaL~VllK~-----------~ppkg~kLli~~TTS~~~vL~----~m~i~~~F~~~i~Vp 670 (744)
T KOG0741|consen 614 VPIGPRFSN--------LVLQALLVLLKK-----------QPPKGRKLLIFGTTSRREVLQ----EMGILDCFSSTIHVP 670 (744)
T ss_pred cccCchhhH--------HHHHHHHHHhcc-----------CCCCCceEEEEecccHHHHHH----HcCHHHhhhheeecC
Confidence 5577652 566788877762 112245789999998776553 222 244467788
Q ss_pred CHHHHHHHHHHHhhcCCCC
Q 020787 204 NLEDILNIVHRMYEKDGIT 222 (321)
Q Consensus 204 d~~~R~~Il~~~~~~~~l~ 222 (321)
+..--.+.+..+...+..+
T Consensus 671 nl~~~~~~~~vl~~~n~fs 689 (744)
T KOG0741|consen 671 NLTTGEQLLEVLEELNIFS 689 (744)
T ss_pred ccCchHHHHHHHHHccCCC
Confidence 6654444444443333333
No 132
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.00 E-value=4.5e-09 Score=108.49 Aligned_cols=146 Identities=14% Similarity=0.242 Sum_probs=93.3
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCC------------------------ceEEeeccccccccCCCcHHHHHHHHHHHHh
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGI------------------------EPVIMSAGELESERAGEPGKLIRERYRTASQ 110 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~------------------------~~i~vs~~eL~s~~~GEser~IR~~F~~A~~ 110 (321)
.++||||||||||++|+++|+.+.+ .++.+.+++- . +-..+|++...+..
T Consensus 40 a~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlieidaas~----~--gvd~ir~ii~~~~~ 113 (546)
T PRK14957 40 AYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEIDAASR----T--GVEETKEILDNIQY 113 (546)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEeecccc----c--CHHHHHHHHHHHHh
Confidence 4789999999999999999998876 2333332211 1 12346777766643
Q ss_pred hhhhcCCceEEEeecccccCCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccccC
Q 020787 111 VVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPL 190 (321)
Q Consensus 111 ~~~~~gaPcILFIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpAL 190 (321)
. ...+...|+||||+|.... .....|+..+.+| ...+.+|.+|+++..+.+++
T Consensus 114 ~-p~~g~~kViIIDEa~~ls~------------~a~naLLK~LEep--------------p~~v~fIL~Ttd~~kil~tI 166 (546)
T PRK14957 114 M-PSQGRYKVYLIDEVHMLSK------------QSFNALLKTLEEP--------------PEYVKFILATTDYHKIPVTI 166 (546)
T ss_pred h-hhcCCcEEEEEechhhccH------------HHHHHHHHHHhcC--------------CCCceEEEEECChhhhhhhH
Confidence 2 1245678999999987632 1223466665532 24677777778899998886
Q ss_pred CCCCCCcceec-CCCHHHHHHHHHHHhhcCCC--CHHHHHHhhhCCCC
Q 020787 191 IRDGRMEKFYW-QPNLEDILNIVHRMYEKDGI--TKDEVGSIVKTFPN 235 (321)
Q Consensus 191 lRpGRfDr~i~-~Pd~~~R~~Il~~~~~~~~l--~~~dl~~L~d~f~g 235 (321)
+- |.-.+-+ .++.++-...|+.++++.++ +...+..|+....|
T Consensus 167 ~S--Rc~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s~G 212 (546)
T PRK14957 167 LS--RCIQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAKG 212 (546)
T ss_pred HH--heeeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 54 5544333 36788877788877776554 55555666554433
No 133
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.00 E-value=2.4e-09 Score=113.47 Aligned_cols=176 Identities=16% Similarity=0.290 Sum_probs=109.3
Q ss_pred HHHHHhhhhhhccCccccchhhhh---------HhccccCCCCcHHHHHHHHHHHcCCceEEe-------------eccc
Q 020787 31 YRQKVTRSFEYLQGDYYIAPVFMA---------SLCIWGGKGQGKSFQTELIFQAMGIEPVIM-------------SAGE 88 (321)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~p~f~~---------iLgL~GPPGcGKTllaravA~e~g~~~i~v-------------s~~e 88 (321)
||.+..++|..+.|-=.+-..+.. .+++|||||||||++|+++|+.+.+.--.. ...+
T Consensus 9 ~~KyRP~~f~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~D 88 (725)
T PRK07133 9 YRKYRPKTFDDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLD 88 (725)
T ss_pred HHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCc
Confidence 444555667777654444333332 578999999999999999999987731100 0011
Q ss_pred ccc--ccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeecccccCCCCCCCccchhhHHHHHHHHhhcCCCCccccCcccc
Q 020787 89 LES--ERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWR 166 (321)
Q Consensus 89 L~s--~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~ 166 (321)
++. +-...+-..||++.+.+.... ..+...|++|||+|.+.+ . ....|+..|..|
T Consensus 89 vieidaasn~~vd~IReLie~~~~~P-~~g~~KV~IIDEa~~LT~-----------~-A~NALLKtLEEP---------- 145 (725)
T PRK07133 89 IIEMDAASNNGVDEIRELIENVKNLP-TQSKYKIYIIDEVHMLSK-----------S-AFNALLKTLEEP---------- 145 (725)
T ss_pred EEEEeccccCCHHHHHHHHHHHHhch-hcCCCEEEEEEChhhCCH-----------H-HHHHHHHHhhcC----------
Confidence 111 000123556888887775432 235678999999998642 1 223466666533
Q ss_pred ccCCCCCccEEEeeCCCCCccccCCCCCCCcceec-CCCHHHHHHHHHHHhhcCCC--CHHHHHHhhhCCCC
Q 020787 167 ESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYW-QPNLEDILNIVHRMYEKDGI--TKDEVGSIVKTFPN 235 (321)
Q Consensus 167 ~~~~~~~V~VIaaTNrp~~LDpALlRpGRfDr~i~-~Pd~~~R~~Il~~~~~~~~l--~~~dl~~L~d~f~g 235 (321)
...+.+|.+|+.++.|.++++. |.-+.-+ .|+.++-..+|+..+...++ +.+.+..++....|
T Consensus 146 ----P~~tifILaTte~~KLl~TI~S--Rcq~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~G 211 (725)
T PRK07133 146 ----PKHVIFILATTEVHKIPLTILS--RVQRFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSG 211 (725)
T ss_pred ----CCceEEEEEcCChhhhhHHHHh--hceeEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 2466777778889999999877 5544333 36888888888877766654 34445555544433
No 134
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.99 E-value=1.1e-09 Score=117.80 Aligned_cols=110 Identities=15% Similarity=0.169 Sum_probs=72.2
Q ss_pred hHhccccCCCCcHHHHHHHHHHHc---CCceEEeeccccccc------------cCCCcHHHHHHHHHHHHhhhhhcCCc
Q 020787 54 ASLCIWGGKGQGKSFQTELIFQAM---GIEPVIMSAGELESE------------RAGEPGKLIRERYRTASQVVQNQGKM 118 (321)
Q Consensus 54 ~iLgL~GPPGcGKTllaravA~e~---g~~~i~vs~~eL~s~------------~~GEser~IR~~F~~A~~~~~~~gaP 118 (321)
-.++|+||||||||.+|+++|..+ ...++.++.+++.++ |+|..+.- .+.+|.+ +...
T Consensus 597 ~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~~~l~g~~~gyvg~~~~g---~L~~~v~----~~p~ 669 (852)
T TIGR03345 597 GVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTVSRLKGSPPGYVGYGEGG---VLTEAVR----RKPY 669 (852)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhhccccCCCCCcccccccc---hHHHHHH----hCCC
Confidence 368999999999999999999999 568899998876433 55543321 1222221 2367
Q ss_pred eEEEeecccccCCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCC
Q 020787 119 SCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFST 185 (321)
Q Consensus 119 cILFIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~ 185 (321)
|||+|||||..- ..+...|++++|+-...--.| ...+ -.++.||+|||....
T Consensus 670 svvllDEieka~------------~~v~~~Llq~ld~g~l~d~~G--r~vd-~~n~iiI~TSNlg~~ 721 (852)
T TIGR03345 670 SVVLLDEVEKAH------------PDVLELFYQVFDKGVMEDGEG--REID-FKNTVILLTSNAGSD 721 (852)
T ss_pred cEEEEechhhcC------------HHHHHHHHHHhhcceeecCCC--cEEe-ccccEEEEeCCCchH
Confidence 999999998642 235567888888432110011 1112 357899999997543
No 135
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.99 E-value=3.5e-09 Score=109.53 Aligned_cols=170 Identities=14% Similarity=0.251 Sum_probs=107.1
Q ss_pred HHHHHhhhhhhccCccccchhhhh---------HhccccCCCCcHHHHHHHHHHHcCCc---------------------
Q 020787 31 YRQKVTRSFEYLQGDYYIAPVFMA---------SLCIWGGKGQGKSFQTELIFQAMGIE--------------------- 80 (321)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~p~f~~---------iLgL~GPPGcGKTllaravA~e~g~~--------------------- 80 (321)
||.+--++|+.+.|-=++-..+.. .++||||||+|||++|+++|+.+.+.
T Consensus 7 ~~kyRP~~f~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~~ 86 (563)
T PRK06647 7 ATKRRPRDFNSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDNDN 86 (563)
T ss_pred HHHhCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcCC
Confidence 455556677777665444444433 68999999999999999999998863
Q ss_pred ---eEEeeccccccccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeecccccCCCCCCCccchhhHHHHHHHHhhcCCCC
Q 020787 81 ---PVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPT 157 (321)
Q Consensus 81 ---~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~ 157 (321)
++.+.+++ -.+-..||++.+.+.... ..+...|++|||+|.... . ....|+..+.+|
T Consensus 87 ~~dv~~idgas------~~~vddIr~l~e~~~~~p-~~~~~KVvIIDEa~~Ls~-----------~-a~naLLK~LEep- 146 (563)
T PRK06647 87 SLDVIEIDGAS------NTSVQDVRQIKEEIMFPP-ASSRYRVYIIDEVHMLSN-----------S-AFNALLKTIEEP- 146 (563)
T ss_pred CCCeEEecCcc------cCCHHHHHHHHHHHHhch-hcCCCEEEEEEChhhcCH-----------H-HHHHHHHhhccC-
Confidence 22222211 012346777666554221 134667999999887631 1 223455555533
Q ss_pred ccccCccccccCCCCCccEEEeeCCCCCccccCCCCCCCcceec-CCCHHHHHHHHHHHhhcCC--CCHHHHHHhhhCCC
Q 020787 158 RVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYW-QPNLEDILNIVHRMYEKDG--ITKDEVGSIVKTFP 234 (321)
Q Consensus 158 ~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpALlRpGRfDr~i~-~Pd~~~R~~Il~~~~~~~~--l~~~dl~~L~d~f~ 234 (321)
...+.+|.+|+.+..|.++|+- |.-.+-+ .|+.++...+|+...+..+ ++.+.+..|+....
T Consensus 147 -------------p~~~vfI~~tte~~kL~~tI~S--Rc~~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~ 211 (563)
T PRK06647 147 -------------PPYIVFIFATTEVHKLPATIKS--RCQHFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKST 211 (563)
T ss_pred -------------CCCEEEEEecCChHHhHHHHHH--hceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 2467777788889999998876 5544333 3678888888887776555 34555555555443
Q ss_pred C
Q 020787 235 N 235 (321)
Q Consensus 235 g 235 (321)
|
T Consensus 212 G 212 (563)
T PRK06647 212 G 212 (563)
T ss_pred C
Confidence 3
No 136
>PRK09087 hypothetical protein; Validated
Probab=98.98 E-value=2.2e-09 Score=98.58 Aligned_cols=132 Identities=17% Similarity=0.245 Sum_probs=82.9
Q ss_pred hccccCCCCcHHHHHHHHHHHcCCceEEeeccccccccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeecccccCCCCCC
Q 020787 56 LCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGN 135 (321)
Q Consensus 56 LgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~~r~~~ 135 (321)
+.||||+|||||.|++++|+..++.++.. .++.. +.+. +. ...+|+|||||....
T Consensus 47 l~l~G~~GsGKThLl~~~~~~~~~~~i~~--~~~~~-----------~~~~-~~-------~~~~l~iDDi~~~~~---- 101 (226)
T PRK09087 47 VVLAGPVGSGKTHLASIWREKSDALLIHP--NEIGS-----------DAAN-AA-------AEGPVLIEDIDAGGF---- 101 (226)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCEEecH--HHcch-----------HHHH-hh-------hcCeEEEECCCCCCC----
Confidence 68999999999999999999987765443 22221 1111 11 114788899997521
Q ss_pred CccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCC----ccccCCCCCCCcc--ee--cCCCHHH
Q 020787 136 TQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFST----IYAPLIRDGRMEK--FY--WQPNLED 207 (321)
Q Consensus 136 t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~----LDpALlRpGRfDr--~i--~~Pd~~~ 207 (321)
++ . .|.++.+.. . ..+.++|+|++.+.. ..|.|+= ||.. .+ ..|+.++
T Consensus 102 ~~-----~----~lf~l~n~~---------~----~~g~~ilits~~~p~~~~~~~~dL~S--Rl~~gl~~~l~~pd~e~ 157 (226)
T PRK09087 102 DE-----T----GLFHLINSV---------R----QAGTSLLMTSRLWPSSWNVKLPDLKS--RLKAATVVEIGEPDDAL 157 (226)
T ss_pred CH-----H----HHHHHHHHH---------H----hCCCeEEEECCCChHHhccccccHHH--HHhCCceeecCCCCHHH
Confidence 11 1 133333310 0 124567776664332 3455543 6653 22 2499999
Q ss_pred HHHHHHHHhhcCC--CCHHHHHHhhhCCCCC
Q 020787 208 ILNIVHRMYEKDG--ITKDEVGSIVKTFPNQ 236 (321)
Q Consensus 208 R~~Il~~~~~~~~--l~~~dl~~L~d~f~gq 236 (321)
|.+||+.+++..+ ++.+-+.-|+..+++.
T Consensus 158 ~~~iL~~~~~~~~~~l~~ev~~~La~~~~r~ 188 (226)
T PRK09087 158 LSQVIFKLFADRQLYVDPHVVYYLVSRMERS 188 (226)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhhhh
Confidence 9999998887664 6788888888877763
No 137
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.98 E-value=4.6e-09 Score=109.70 Aligned_cols=152 Identities=15% Similarity=0.236 Sum_probs=96.5
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEE----e--------------ecccc--ccccCCCcHHHHHHHHHHHHhhhhh
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVI----M--------------SAGEL--ESERAGEPGKLIRERYRTASQVVQN 114 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~----v--------------s~~eL--~s~~~GEser~IR~~F~~A~~~~~~ 114 (321)
-++||||||+|||++|+++|+.+.+.... - +..++ ++...+.+-..||++...|... ..
T Consensus 40 a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~-p~ 118 (620)
T PRK14948 40 AYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFA-PV 118 (620)
T ss_pred eEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhC-hh
Confidence 46899999999999999999999873110 0 00111 1222334567899999877532 12
Q ss_pred cCCceEEEeecccccCCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccccCCCCC
Q 020787 115 QGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDG 194 (321)
Q Consensus 115 ~gaPcILFIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpALlRpG 194 (321)
.+.-.|+||||+|.+-. .....|+..+.+| ...+.+|++||+++.|.++|+-
T Consensus 119 ~~~~KViIIDEad~Lt~------------~a~naLLK~LEeP--------------p~~tvfIL~t~~~~~llpTIrS-- 170 (620)
T PRK14948 119 QARWKVYVIDECHMLST------------AAFNALLKTLEEP--------------PPRVVFVLATTDPQRVLPTIIS-- 170 (620)
T ss_pred cCCceEEEEECccccCH------------HHHHHHHHHHhcC--------------CcCeEEEEEeCChhhhhHHHHh--
Confidence 34567999999997631 1223566666633 2457777788889999998875
Q ss_pred CCcceec-CCCHHHHHHHHHHHhhcC--CCCHHHHHHhhhCCCC
Q 020787 195 RMEKFYW-QPNLEDILNIVHRMYEKD--GITKDEVGSIVKTFPN 235 (321)
Q Consensus 195 RfDr~i~-~Pd~~~R~~Il~~~~~~~--~l~~~dl~~L~d~f~g 235 (321)
|...+-+ .|+.++-...|+.+.++. .++.+.+..|+....|
T Consensus 171 Rc~~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s~G 214 (620)
T PRK14948 171 RCQRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQG 214 (620)
T ss_pred heeEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC
Confidence 5544333 356666666666665554 3556666666655554
No 138
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.97 E-value=4.2e-09 Score=107.52 Aligned_cols=146 Identities=13% Similarity=0.241 Sum_probs=99.4
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCC------------------------ceEEeeccccccccCCCcHHHHHHHHHHHHh
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGI------------------------EPVIMSAGELESERAGEPGKLIRERYRTASQ 110 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~------------------------~~i~vs~~eL~s~~~GEser~IR~~F~~A~~ 110 (321)
-++||||||+|||++|+++|+.+.+ .++.+++++- -+-..||++.+.+..
T Consensus 37 a~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~eidaas~------~~vddIR~Iie~~~~ 110 (491)
T PRK14964 37 SILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEIDAASN------TSVDDIKVILENSCY 110 (491)
T ss_pred eEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEEecccC------CCHHHHHHHHHHHHh
Confidence 6899999999999999999997644 3355555421 234568888777643
Q ss_pred hhhhcCCceEEEeecccccCCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccccC
Q 020787 111 VVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPL 190 (321)
Q Consensus 111 ~~~~~gaPcILFIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpAL 190 (321)
. ...+...|++|||+|.+.. ... ..|+..+.+| .+.+.+|.+||.++.|.+++
T Consensus 111 ~-P~~~~~KVvIIDEah~Ls~-----------~A~-NaLLK~LEeP--------------p~~v~fIlatte~~Kl~~tI 163 (491)
T PRK14964 111 L-PISSKFKVYIIDEVHMLSN-----------SAF-NALLKTLEEP--------------APHVKFILATTEVKKIPVTI 163 (491)
T ss_pred c-cccCCceEEEEeChHhCCH-----------HHH-HHHHHHHhCC--------------CCCeEEEEEeCChHHHHHHH
Confidence 2 2235678999999987632 112 2456666643 34677888888899999887
Q ss_pred CCCCCCcceec-CCCHHHHHHHHHHHhhcCC--CCHHHHHHhhhCCCC
Q 020787 191 IRDGRMEKFYW-QPNLEDILNIVHRMYEKDG--ITKDEVGSIVKTFPN 235 (321)
Q Consensus 191 lRpGRfDr~i~-~Pd~~~R~~Il~~~~~~~~--l~~~dl~~L~d~f~g 235 (321)
+- |.-.+-+ .++.++..+.++.+.++.+ ++.+.+..|+....|
T Consensus 164 ~S--Rc~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~G 209 (491)
T PRK14964 164 IS--RCQRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSG 209 (491)
T ss_pred HH--hheeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 76 4433333 3688888888888877665 556667766665544
No 139
>PRK08116 hypothetical protein; Validated
Probab=98.97 E-value=7.2e-10 Score=104.31 Aligned_cols=99 Identities=21% Similarity=0.344 Sum_probs=65.0
Q ss_pred HhccccCCCCcHHHHHHHHHHHc---CCceEEeeccccccccC----CCcHHHHHHHHHHHHhhhhhcCCceEEEeeccc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM---GIEPVIMSAGELESERA----GEPGKLIRERYRTASQVVQNQGKMSCLMINDID 127 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~---g~~~i~vs~~eL~s~~~----GEser~IR~~F~~A~~~~~~~gaPcILFIDEID 127 (321)
.|+||||||||||+||.|+|+++ +.+++.++.+++++.+. +.+.....++++.. ....+|+|||+.
T Consensus 116 gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l-------~~~dlLviDDlg 188 (268)
T PRK08116 116 GLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSL-------VNADLLILDDLG 188 (268)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHh-------cCCCEEEEeccc
Confidence 48999999999999999999985 88999999999876431 11111111122111 145699999996
Q ss_pred ccCCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCC
Q 020787 128 AGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDF 183 (321)
Q Consensus 128 Ag~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp 183 (321)
+-.. + .-...+|.+++|+- + ..+.|+|+|||.+
T Consensus 189 ~e~~----t------~~~~~~l~~iin~r--------~-----~~~~~~IiTsN~~ 221 (268)
T PRK08116 189 AERD----T------EWAREKVYNIIDSR--------Y-----RKGLPTIVTTNLS 221 (268)
T ss_pred CCCC----C------HHHHHHHHHHHHHH--------H-----HCCCCEEEECCCC
Confidence 5211 1 12234677777721 1 2467999999976
No 140
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=1.8e-09 Score=109.07 Aligned_cols=141 Identities=16% Similarity=0.246 Sum_probs=101.8
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeeccccccc-cCCCc-HHHHHHHHHHHHhhhhhcCCceEEEeecccccCCC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESE-RAGEP-GKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGR 132 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~-~~GEs-er~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~~r 132 (321)
-++|.||.|+||||||+-+|+-++++|....+..|.+. |+||- |..|..++..|-=.+. +.+--|+||||+|.+...
T Consensus 228 NvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVe-kAQqGIVflDEvDKi~~~ 306 (564)
T KOG0745|consen 228 NVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVE-KAQQGIVFLDEVDKITKK 306 (564)
T ss_pred cEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHH-HHhcCeEEEehhhhhccc
Confidence 56788999999999999999999999999999999875 99984 6677778877743332 346679999999998854
Q ss_pred CC--CCccchhhHHHHHHHHhhcCCCCccccCccccc-cCCCCCccEEE-------eeCCCCCccccCCCCCCCccee
Q 020787 133 FG--NTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRE-SDITNRIPIIF-------TGNDFSTIYAPLIRDGRMEKFY 200 (321)
Q Consensus 133 ~~--~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~-~~~~~~V~VIa-------aTNrp~~LDpALlRpGRfDr~i 200 (321)
-. ++..+|...=|++.||.++.| |.|.+++. .. .........|= |.--+..||--.-| |+|...
T Consensus 307 ~~~i~~~RDVsGEGVQQaLLKllEG-tvVnVpeK-~~~~~~rgd~vqiDTtnILFiasGAF~~Ldk~I~r--R~~d~s 380 (564)
T KOG0745|consen 307 AESIHTSRDVSGEGVQQALLKLLEG-TVVNVPEK-GSRRKPRGDTVQIDTTNILFIASGAFVGLDKIISR--RLDDKS 380 (564)
T ss_pred CccccccccccchhHHHHHHHHhcc-cEEcccCC-CCCCCCCCCeEEEeccceEEEecccccchHHHHHH--hhcchh
Confidence 33 566677777889999999985 56666541 11 01111122222 33357777877777 888644
No 141
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.97 E-value=7.8e-09 Score=111.06 Aligned_cols=156 Identities=17% Similarity=0.220 Sum_probs=95.0
Q ss_pred HhccccCCCCcHHHHHHHHHHHc---CCceEEeecccccc-----ccCCCcHHHH----HHHHHHHHhhhhhcCCceEEE
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM---GIEPVIMSAGELES-----ERAGEPGKLI----RERYRTASQVVQNQGKMSCLM 122 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~---g~~~i~vs~~eL~s-----~~~GEser~I----R~~F~~A~~~~~~~gaPcILF 122 (321)
.++|+||||||||.+|+++|..+ +-+++.++.+++.+ +..|-|...+ ...+.++.. +..-||||
T Consensus 597 ~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~~~l~g~~~g~~g~~~~g~l~~~v~----~~p~~vll 672 (852)
T TIGR03346 597 SFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSVARLIGAPPGYVGYEEGGQLTEAVR----RKPYSVVL 672 (852)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchHHHhcCCCCCccCcccccHHHHHHH----cCCCcEEE
Confidence 47899999999999999999987 56899998887643 2233221100 012223321 12347999
Q ss_pred eecccccCCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCC-----------------
Q 020787 123 INDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFST----------------- 185 (321)
Q Consensus 123 IDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~----------------- 185 (321)
|||||..- ..+...|++++|..... ++.-...+ -+++.||+|||....
T Consensus 673 lDeieka~------------~~v~~~Ll~~l~~g~l~--d~~g~~vd-~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~ 737 (852)
T TIGR03346 673 FDEVEKAH------------PDVFNVLLQVLDDGRLT--DGQGRTVD-FRNTVIIMTSNLGSQFIQELAGGDDYEEMREA 737 (852)
T ss_pred EeccccCC------------HHHHHHHHHHHhcCcee--cCCCeEEe-cCCcEEEEeCCcchHhHhhhcccccHHHHHHH
Confidence 99999652 23556788888743211 11000111 246889999998432
Q ss_pred --------ccccCCCCCCCccee-cC-CCHHHHHHHHHHHhh-------c----CCCCHHHHHHhhh
Q 020787 186 --------IYAPLIRDGRMEKFY-WQ-PNLEDILNIVHRMYE-------K----DGITKDEVGSIVK 231 (321)
Q Consensus 186 --------LDpALlRpGRfDr~i-~~-Pd~~~R~~Il~~~~~-------~----~~l~~~dl~~L~d 231 (321)
+.|+|+ +|||..+ +. ++.++..+|+...+. . ..++.+.+..|++
T Consensus 738 ~~~~~~~~F~pel~--~Rid~IivF~PL~~e~l~~I~~l~L~~l~~~l~~~~~~l~i~~~a~~~L~~ 802 (852)
T TIGR03346 738 VMEVLRAHFRPEFL--NRIDEIVVFHPLGREQIARIVEIQLGRLRKRLAERKITLELSDAALDFLAE 802 (852)
T ss_pred HHHHHHhhcCHHHh--cCcCeEEecCCcCHHHHHHHHHHHHHHHHHHHHHCCCeecCCHHHHHHHHH
Confidence 224444 5999855 44 688888888865432 1 1345666666765
No 142
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.94 E-value=1.3e-09 Score=108.57 Aligned_cols=68 Identities=24% Similarity=0.320 Sum_probs=56.8
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCc---eEEeeccccccccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeeccccc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIE---PVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAG 129 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~---~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg 129 (321)
.+.||||||||||+|||.+++...-+ ||.+|+..- .-+-+|++|+.|...-.-.++-.|||||||...
T Consensus 164 SmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a-------~t~dvR~ife~aq~~~~l~krkTilFiDEiHRF 234 (554)
T KOG2028|consen 164 SMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNA-------KTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRF 234 (554)
T ss_pred ceEEecCCCCchHHHHHHHHhhcCCCceEEEEEecccc-------chHHHHHHHHHHHHHHhhhcceeEEEeHHhhhh
Confidence 78899999999999999999888776 888888632 257899999999766444578899999999753
No 143
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.94 E-value=2.7e-09 Score=114.14 Aligned_cols=110 Identities=19% Similarity=0.172 Sum_probs=69.7
Q ss_pred hHhccccCCCCcHHHHHHHHHHHc---CCceEEeecccccc-----ccCCCcHHH-----HHHHHHHHHhhhhhcCCc-e
Q 020787 54 ASLCIWGGKGQGKSFQTELIFQAM---GIEPVIMSAGELES-----ERAGEPGKL-----IRERYRTASQVVQNQGKM-S 119 (321)
Q Consensus 54 ~iLgL~GPPGcGKTllaravA~e~---g~~~i~vs~~eL~s-----~~~GEser~-----IR~~F~~A~~~~~~~gaP-c 119 (321)
-.++|+||||||||.+|+++|+.+ +.+++.+..++..+ +..|.|+.- ...+.+..+ . +| |
T Consensus 540 ~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~~l~g~~~gyvg~~~~~~l~~~~~-~-----~p~~ 613 (821)
T CHL00095 540 ASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVSKLIGSPPGYVGYNEGGQLTEAVR-K-----KPYT 613 (821)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHHHhcCCCCcccCcCccchHHHHHH-h-----CCCe
Confidence 356799999999999999999997 46899999888632 233332110 112222222 1 34 8
Q ss_pred EEEeecccccCCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCC
Q 020787 120 CLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFS 184 (321)
Q Consensus 120 ILFIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~ 184 (321)
||+|||||..-+ .+...|+.++|.-...--.| ...+ .+++.||+|||-..
T Consensus 614 VvllDeieka~~------------~v~~~Llq~le~g~~~d~~g--~~v~-~~~~i~I~Tsn~g~ 663 (821)
T CHL00095 614 VVLFDEIEKAHP------------DIFNLLLQILDDGRLTDSKG--RTID-FKNTLIIMTSNLGS 663 (821)
T ss_pred EEEECChhhCCH------------HHHHHHHHHhccCceecCCC--cEEe-cCceEEEEeCCcch
Confidence 999999997532 35667888888432111111 1112 35788999999654
No 144
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.93 E-value=1.1e-08 Score=105.82 Aligned_cols=172 Identities=12% Similarity=0.219 Sum_probs=101.7
Q ss_pred HhhhhhhccCccccchhhhh---------HhccccCCCCcHHHHHHHHHHHcCCceEEe---e--------------ccc
Q 020787 35 VTRSFEYLQGDYYIAPVFMA---------SLCIWGGKGQGKSFQTELIFQAMGIEPVIM---S--------------AGE 88 (321)
Q Consensus 35 ~~~~~~~~~~~~~~~p~f~~---------iLgL~GPPGcGKTllaravA~e~g~~~i~v---s--------------~~e 88 (321)
--++|+.+.|-=.+-..+.. .++||||||||||++|+++|+.+.+..-.- . ..+
T Consensus 11 RP~~~~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~i~~~~~~d 90 (585)
T PRK14950 11 RSQTFAELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRAIAEGSAVD 90 (585)
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHHHhcCCCCe
Confidence 34556666554333333322 468999999999999999999987532100 0 011
Q ss_pred ccc--ccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeecccccCCCCCCCccchhhHHHHHHHHhhcCCCCccccCcccc
Q 020787 89 LES--ERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWR 166 (321)
Q Consensus 89 L~s--~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~ 166 (321)
++. .-..-+-..+|++-+.+... ...+...|+||||+|.+.. ... ..|+..+.+|
T Consensus 91 ~~~i~~~~~~~vd~ir~ii~~~~~~-p~~~~~kVvIIDEa~~L~~-----------~a~-naLLk~LEep---------- 147 (585)
T PRK14950 91 VIEMDAASHTSVDDAREIIERVQFR-PALARYKVYIIDEVHMLST-----------AAF-NALLKTLEEP---------- 147 (585)
T ss_pred EEEEeccccCCHHHHHHHHHHHhhC-cccCCeEEEEEeChHhCCH-----------HHH-HHHHHHHhcC----------
Confidence 110 00011234566665544322 1134567999999987631 112 2466666643
Q ss_pred ccCCCCCccEEEeeCCCCCccccCCCCCCCcceec-CCCHHHHHHHHHHHhhcCC--CCHHHHHHhhhCCCC
Q 020787 167 ESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYW-QPNLEDILNIVHRMYEKDG--ITKDEVGSIVKTFPN 235 (321)
Q Consensus 167 ~~~~~~~V~VIaaTNrp~~LDpALlRpGRfDr~i~-~Pd~~~R~~Il~~~~~~~~--l~~~dl~~L~d~f~g 235 (321)
...+.+|++|+.++.+.+.|+. |..++.+ .++..+-..+++.+.+..+ ++.+.+..|+....|
T Consensus 148 ----p~~tv~Il~t~~~~kll~tI~S--R~~~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~G 213 (585)
T PRK14950 148 ----PPHAIFILATTEVHKVPATILS--RCQRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATG 213 (585)
T ss_pred ----CCCeEEEEEeCChhhhhHHHHh--ccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 2356677777888888888765 4444333 3677888888877766654 566667777665555
No 145
>PRK12377 putative replication protein; Provisional
Probab=98.93 E-value=2.2e-09 Score=100.64 Aligned_cols=98 Identities=17% Similarity=0.214 Sum_probs=64.8
Q ss_pred HhccccCCCCcHHHHHHHHHHHc---CCceEEeeccccccccCCCcHHHHHHHHHHH---HhhhhhcCCceEEEeecccc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM---GIEPVIMSAGELESERAGEPGKLIRERYRTA---SQVVQNQGKMSCLMINDIDA 128 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~---g~~~i~vs~~eL~s~~~GEser~IR~~F~~A---~~~~~~~gaPcILFIDEIDA 128 (321)
.|+||||||||||+||.|+|+++ |..++.++.+++.+.. +..|... .+..+.-.+..+|+||||.+
T Consensus 103 ~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l--------~~~~~~~~~~~~~l~~l~~~dLLiIDDlg~ 174 (248)
T PRK12377 103 NFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRL--------HESYDNGQSGEKFLQELCKVDLLVLDEIGI 174 (248)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHH--------HHHHhccchHHHHHHHhcCCCEEEEcCCCC
Confidence 58899999999999999999887 6788888898888632 2222100 00111123789999999987
Q ss_pred cCCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCC
Q 020787 129 GLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDF 183 (321)
Q Consensus 129 g~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp 183 (321)
.... .. -...|.+++|.- ..++.|+|+|||-.
T Consensus 175 ~~~s-------~~---~~~~l~~ii~~R-------------~~~~~ptiitSNl~ 206 (248)
T PRK12377 175 QRET-------KN---EQVVLNQIIDRR-------------TASMRSVGMLTNLN 206 (248)
T ss_pred CCCC-------HH---HHHHHHHHHHHH-------------HhcCCCEEEEcCCC
Confidence 5321 11 123566666621 13468999999964
No 146
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.92 E-value=9.3e-09 Score=101.35 Aligned_cols=151 Identities=17% Similarity=0.280 Sum_probs=89.2
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEE----------eecc--------------ccccccCCC---cHHHHHHHHHH
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVI----------MSAG--------------ELESERAGE---PGKLIRERYRT 107 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~----------vs~~--------------eL~s~~~GE---ser~IR~~F~~ 107 (321)
-+++|||||||||++|+++|+.+.+.--. -.++ ++. .+-|. +-..||++-+.
T Consensus 40 a~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~~~~~~n~~-~~~~~~~~~id~Ir~l~~~ 118 (397)
T PRK14955 40 GYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDFDAGTSLNIS-EFDAASNNSVDDIRLLREN 118 (397)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHHhcCCCCCeE-eecccccCCHHHHHHHHHH
Confidence 48899999999999999999999873100 0000 110 11121 23567766555
Q ss_pred HHhhhhhcCCceEEEeecccccCCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCcc
Q 020787 108 ASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIY 187 (321)
Q Consensus 108 A~~~~~~~gaPcILFIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LD 187 (321)
+... ...+.-.|+||||+|.... ... ..|+..+.+| .+.+.+|.+|+++..|.
T Consensus 119 ~~~~-p~~~~~kvvIIdea~~l~~-----------~~~-~~LLk~LEep--------------~~~t~~Il~t~~~~kl~ 171 (397)
T PRK14955 119 VRYG-PQKGRYRVYIIDEVHMLSI-----------AAF-NAFLKTLEEP--------------PPHAIFIFATTELHKIP 171 (397)
T ss_pred Hhhc-hhcCCeEEEEEeChhhCCH-----------HHH-HHHHHHHhcC--------------CCCeEEEEEeCChHHhH
Confidence 5311 1123446999999887632 111 2355555533 23556666777888888
Q ss_pred ccCCCCCCCcce-ecCCCHHHHHHHHHHHhhcCC--CCHHHHHHhhhCCCC
Q 020787 188 APLIRDGRMEKF-YWQPNLEDILNIVHRMYEKDG--ITKDEVGSIVKTFPN 235 (321)
Q Consensus 188 pALlRpGRfDr~-i~~Pd~~~R~~Il~~~~~~~~--l~~~dl~~L~d~f~g 235 (321)
++|.. |.... +..++.++-...++..++..+ ++.+.+..|+....|
T Consensus 172 ~tl~s--R~~~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l~~~s~g 220 (397)
T PRK14955 172 ATIAS--RCQRFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIGRKAQG 220 (397)
T ss_pred HHHHH--HHHHhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 88775 33221 123577777777777776554 666667776654443
No 147
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.91 E-value=1.3e-08 Score=105.88 Aligned_cols=164 Identities=13% Similarity=0.241 Sum_probs=102.6
Q ss_pred HHHHHhhhhhhccCccccchhhhh---------HhccccCCCCcHHHHHHHHHHHcCCc---------------------
Q 020787 31 YRQKVTRSFEYLQGDYYIAPVFMA---------SLCIWGGKGQGKSFQTELIFQAMGIE--------------------- 80 (321)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~p~f~~---------iLgL~GPPGcGKTllaravA~e~g~~--------------------- 80 (321)
||.+--++|+.+.|--++-..+-. .++||||||||||++|+++|+.+.+.
T Consensus 4 ~~kyRP~~f~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~ 83 (584)
T PRK14952 4 YRKYRPATFAEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNG 83 (584)
T ss_pred HHHhCCCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhccc
Confidence 555566778888877666555443 47999999999999999999998862
Q ss_pred -----eEEeeccccccccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeecccccCCCCCCCccchhhHHHHHHHHhhcCC
Q 020787 81 -----PVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDN 155 (321)
Q Consensus 81 -----~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~ 155 (321)
++.+++++- -+=..||++-+.+... ...+.--|++|||+|.+.. . ....|+..|..
T Consensus 84 ~~~~dvieidaas~------~gvd~iRel~~~~~~~-P~~~~~KVvIIDEah~Lt~-----------~-A~NALLK~LEE 144 (584)
T PRK14952 84 PGSIDVVELDAASH------GGVDDTRELRDRAFYA-PAQSRYRIFIVDEAHMVTT-----------A-GFNALLKIVEE 144 (584)
T ss_pred CCCceEEEeccccc------cCHHHHHHHHHHHHhh-hhcCCceEEEEECCCcCCH-----------H-HHHHHHHHHhc
Confidence 222332211 1234566665544321 1123456999999988632 1 22345655553
Q ss_pred CCccccCccccccCCCCCccEEEeeCCCCCccccCCCCCCCcceec-CCCHHHHHHHHHHHhhcCC--CCHHHHHHh
Q 020787 156 PTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYW-QPNLEDILNIVHRMYEKDG--ITKDEVGSI 229 (321)
Q Consensus 156 ~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpALlRpGRfDr~i~-~Pd~~~R~~Il~~~~~~~~--l~~~dl~~L 229 (321)
| ...+.+|.+|+.++.|.++++- |--++-+ .++.++-.+.|+.+++..+ ++.+.+..+
T Consensus 145 p--------------p~~~~fIL~tte~~kll~TI~S--Rc~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~I 205 (584)
T PRK14952 145 P--------------PEHLIFIFATTEPEKVLPTIRS--RTHHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLV 205 (584)
T ss_pred C--------------CCCeEEEEEeCChHhhHHHHHH--hceEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 2 3467777888889999999765 4333333 3677777777877777655 344433333
No 148
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.89 E-value=1.4e-09 Score=101.71 Aligned_cols=99 Identities=16% Similarity=0.240 Sum_probs=64.4
Q ss_pred HhccccCCCCcHHHHHHHHHHHc---CCceEEeeccccccccCCC---cHHHHHHHHHHHHhhhhhcCCceEEEeecccc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM---GIEPVIMSAGELESERAGE---PGKLIRERYRTASQVVQNQGKMSCLMINDIDA 128 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~---g~~~i~vs~~eL~s~~~GE---ser~IR~~F~~A~~~~~~~gaPcILFIDEIDA 128 (321)
.++||||||||||+|+.|+|.++ |..++.++.+++++...+. ++....++++.. ..+.+|+||||++
T Consensus 101 ~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l-------~~~dlLvIDDig~ 173 (244)
T PRK07952 101 SFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDL-------SNVDLLVIDEIGV 173 (244)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHh-------ccCCEEEEeCCCC
Confidence 68899999999999999999988 7889999999988633211 111111222221 2688999999988
Q ss_pred cCCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCC
Q 020787 129 GLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDF 183 (321)
Q Consensus 129 g~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp 183 (321)
... + .. .+ ..|.+++|. + ..++.|+|+|||-.
T Consensus 174 ~~~----s--~~-~~---~~l~~Ii~~----------R---y~~~~~tiitSNl~ 205 (244)
T PRK07952 174 QTE----S--RY-EK---VIINQIVDR----------R---SSSKRPTGMLTNSN 205 (244)
T ss_pred CCC----C--HH-HH---HHHHHHHHH----------H---HhCCCCEEEeCCCC
Confidence 531 1 11 11 234455551 1 12468999999954
No 149
>PRK08181 transposase; Validated
Probab=98.89 E-value=1.2e-09 Score=103.45 Aligned_cols=98 Identities=21% Similarity=0.238 Sum_probs=64.0
Q ss_pred HhccccCCCCcHHHHHHHHHHH---cCCceEEeeccccccccCC-CcHHHHHHHHHHHHhhhhhcCCceEEEeecccccC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQA---MGIEPVIMSAGELESERAG-EPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGL 130 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e---~g~~~i~vs~~eL~s~~~G-Eser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~ 130 (321)
-++||||||||||.|+.|++.+ .|..++.++.++|+..... ..+....+.++.. .++.+|+|||++...
T Consensus 108 nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l-------~~~dLLIIDDlg~~~ 180 (269)
T PRK08181 108 NLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKL-------DKFDLLILDDLAYVT 180 (269)
T ss_pred eEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHH-------hcCCEEEEecccccc
Confidence 5899999999999999999864 4778888899988875411 1111122222222 268899999998754
Q ss_pred CCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCC
Q 020787 131 GRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDF 183 (321)
Q Consensus 131 ~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp 183 (321)
.. +.....|.++++. . ..+-++|+|||.+
T Consensus 181 ~~----------~~~~~~Lf~lin~----------R----~~~~s~IiTSN~~ 209 (269)
T PRK08181 181 KD----------QAETSVLFELISA----------R----YERRSILITANQP 209 (269)
T ss_pred CC----------HHHHHHHHHHHHH----------H----HhCCCEEEEcCCC
Confidence 32 1122345556551 0 1135899999976
No 150
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.88 E-value=5.5e-09 Score=101.63 Aligned_cols=142 Identities=20% Similarity=0.371 Sum_probs=92.4
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCc-e-----EEeeccccccccCCCcHHHHHH---HHHHHHhhh-hhcCCc----eE
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIE-P-----VIMSAGELESERAGEPGKLIRE---RYRTASQVV-QNQGKM----SC 120 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~-~-----i~vs~~eL~s~~~GEser~IR~---~F~~A~~~~-~~~gaP----cI 120 (321)
-+++|||||||||+.++|.|.++..+ + ....+++ --|-+ .+|+ -|..-.... +..+.| -|
T Consensus 59 ~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSd----erGis--vvr~Kik~fakl~~~~~~~~~~~~~~fKi 132 (346)
T KOG0989|consen 59 HYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASD----ERGIS--VVREKIKNFAKLTVLLKRSDGYPCPPFKI 132 (346)
T ss_pred eEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccc----ccccc--chhhhhcCHHHHhhccccccCCCCCcceE
Confidence 67899999999999999999999871 1 1122222 12222 3332 333332221 112233 59
Q ss_pred EEeecccccCCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccccCCCCCCCccee
Q 020787 121 LMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFY 200 (321)
Q Consensus 121 LFIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpALlRpGRfDr~i 200 (321)
|+|||.|+... .-.++|...|+++ ...+-.|.-||-++.|..++.= |.-|+.
T Consensus 133 iIlDEcdsmts------------daq~aLrr~mE~~--------------s~~trFiLIcnylsrii~pi~S--RC~Kfr 184 (346)
T KOG0989|consen 133 IILDECDSMTS------------DAQAALRRTMEDF--------------SRTTRFILICNYLSRIIRPLVS--RCQKFR 184 (346)
T ss_pred EEEechhhhhH------------HHHHHHHHHHhcc--------------ccceEEEEEcCChhhCChHHHh--hHHHhc
Confidence 99999999752 2345676667742 2456666778999999999987 888888
Q ss_pred cCC-CHHHHHHHHHHHhhcCCCC--HHHHHHhh
Q 020787 201 WQP-NLEDILNIVHRMYEKDGIT--KDEVGSIV 230 (321)
Q Consensus 201 ~~P-d~~~R~~Il~~~~~~~~l~--~~dl~~L~ 230 (321)
+-| ..++-...|+.+..+.+++ .+.+..++
T Consensus 185 Fk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~ 217 (346)
T KOG0989|consen 185 FKKLKDEDIVDRLEKIASKEGVDIDDDALKLIA 217 (346)
T ss_pred CCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 866 3456677788888877764 45555555
No 151
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.85 E-value=8.5e-09 Score=111.09 Aligned_cols=141 Identities=18% Similarity=0.221 Sum_probs=85.0
Q ss_pred HhccccCCCCcHHHHHHHHHHHc---CCceEEeeccccccc-----cCCCcHHHH----HHHHHHHHhhhhhcCCceEEE
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM---GIEPVIMSAGELESE-----RAGEPGKLI----RERYRTASQVVQNQGKMSCLM 122 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~---g~~~i~vs~~eL~s~-----~~GEser~I----R~~F~~A~~~~~~~gaPcILF 122 (321)
.++|+||||||||++|+++|+.+ +-+++.++.+++.++ ..|.+..-+ ...+.++... ..-+|||
T Consensus 600 ~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~~~~~LiG~~pgy~g~~~~g~l~~~v~~----~p~~vLl 675 (857)
T PRK10865 600 SFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRR----RPYSVIL 675 (857)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhhhHHHHhCCCCcccccchhHHHHHHHHh----CCCCeEE
Confidence 57899999999999999999987 457898888876532 122111000 1123333221 1338999
Q ss_pred eecccccCCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCC-----------------
Q 020787 123 INDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFST----------------- 185 (321)
Q Consensus 123 IDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~----------------- 185 (321)
|||||..- ..+...|++++|+-... ++.-...+ .++..||+|||....
T Consensus 676 lDEieka~------------~~v~~~Ll~ile~g~l~--d~~gr~vd-~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~ 740 (857)
T PRK10865 676 LDEVEKAH------------PDVFNILLQVLDDGRLT--DGQGRTVD-FRNTVVIMTSNLGSDLIQERFGELDYAHMKEL 740 (857)
T ss_pred EeehhhCC------------HHHHHHHHHHHhhCcee--cCCceEEe-ecccEEEEeCCcchHHHHHhccccchHHHHHH
Confidence 99998653 23556788888742111 11001111 246778999997422
Q ss_pred --------ccccCCCCCCCccee-cC-CCHHHHHHHHHHHh
Q 020787 186 --------IYAPLIRDGRMEKFY-WQ-PNLEDILNIVHRMY 216 (321)
Q Consensus 186 --------LDpALlRpGRfDr~i-~~-Pd~~~R~~Il~~~~ 216 (321)
+.|+|+ .|+|..+ +. ++.++...|++.++
T Consensus 741 ~~~~~~~~f~PELl--nRld~iivF~PL~~edl~~Iv~~~L 779 (857)
T PRK10865 741 VLGVVSHNFRPEFI--NRIDEVVVFHPLGEQHIASIAQIQL 779 (857)
T ss_pred HHHHHcccccHHHH--HhCCeeEecCCCCHHHHHHHHHHHH
Confidence 234555 3887654 34 57777777776544
No 152
>PRK06921 hypothetical protein; Provisional
Probab=98.84 E-value=6.9e-09 Score=97.72 Aligned_cols=66 Identities=17% Similarity=0.298 Sum_probs=47.1
Q ss_pred HhccccCCCCcHHHHHHHHHHHc----CCceEEeeccccccccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeecccc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM----GIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDA 128 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~----g~~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDEIDA 128 (321)
-|+||||||||||+|+.|+|+++ |...+.++..+++.. ++..|....+..+.-....+|+||||+.
T Consensus 119 ~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~--------l~~~~~~~~~~~~~~~~~dlLiIDDl~~ 188 (266)
T PRK06921 119 SIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGD--------LKDDFDLLEAKLNRMKKVEVLFIDDLFK 188 (266)
T ss_pred eEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHH--------HHHHHHHHHHHHHHhcCCCEEEEecccc
Confidence 48999999999999999999986 677888888777643 2333322211111123688999999966
No 153
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.84 E-value=4.7e-09 Score=102.06 Aligned_cols=99 Identities=22% Similarity=0.304 Sum_probs=64.8
Q ss_pred HhccccCCCCcHHHHHHHHHHHc---CCceEEeeccccccccCC---CcHHHHHHHHHHHHhhhhhcCCceEEEeecccc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM---GIEPVIMSAGELESERAG---EPGKLIRERYRTASQVVQNQGKMSCLMINDIDA 128 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~---g~~~i~vs~~eL~s~~~G---Eser~IR~~F~~A~~~~~~~gaPcILFIDEIDA 128 (321)
.|+||||||+|||+|+.|+|+++ |..++.+++++|++.... +......+.++.. ....+|+|||+..
T Consensus 185 ~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l-------~~~DLLIIDDlG~ 257 (329)
T PRK06835 185 NLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLL-------INCDLLIIDDLGT 257 (329)
T ss_pred cEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHh-------ccCCEEEEeccCC
Confidence 89999999999999999999986 788999999998864311 0000111112211 2578999999977
Q ss_pred cCCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCC
Q 020787 129 GLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDF 183 (321)
Q Consensus 129 g~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp 183 (321)
.... ......|.++++.- ...+.|+|+|||.+
T Consensus 258 e~~t----------~~~~~~Lf~iin~R-------------~~~~k~tIiTSNl~ 289 (329)
T PRK06835 258 EKIT----------EFSKSELFNLINKR-------------LLRQKKMIISTNLS 289 (329)
T ss_pred CCCC----------HHHHHHHHHHHHHH-------------HHCCCCEEEECCCC
Confidence 5321 12234566666520 12357899999964
No 154
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.84 E-value=2.6e-08 Score=92.25 Aligned_cols=115 Identities=18% Similarity=0.305 Sum_probs=78.5
Q ss_pred HhccccCCCCcHHHHHHHHHHHcC------------------------CceEEeeccccccccCCCcHHHHHHHHHHHHh
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMG------------------------IEPVIMSAGELESERAGEPGKLIRERYRTASQ 110 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g------------------------~~~i~vs~~eL~s~~~GEser~IR~~F~~A~~ 110 (321)
.|+||||||||||..|.++|+++. -.++.+++++.-..- .+++..+++.+
T Consensus 26 alL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~~------i~~~~vr~~~~ 99 (325)
T COG0470 26 ALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKID------IIVEQVRELAE 99 (325)
T ss_pred eeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCCc------chHHHHHHHHH
Confidence 799999999999999999999999 477778887655422 23444444433
Q ss_pred hhhh---cCCceEEEeecccccCCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCcc
Q 020787 111 VVQN---QGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIY 187 (321)
Q Consensus 111 ~~~~---~gaPcILFIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LD 187 (321)
.... .+..-|++|||+|.+.. +.-++.|-++ +....+.++|.+||+++.|-
T Consensus 100 ~~~~~~~~~~~kviiidead~mt~-----------~A~nallk~l---------------Eep~~~~~~il~~n~~~~il 153 (325)
T COG0470 100 FLSESPLEGGYKVVIIDEADKLTE-----------DAANALLKTL---------------EEPPKNTRFILITNDPSKIL 153 (325)
T ss_pred HhccCCCCCCceEEEeCcHHHHhH-----------HHHHHHHHHh---------------ccCCCCeEEEEEcCChhhcc
Confidence 3211 25678999999999754 1122222221 12256899999999999999
Q ss_pred ccCCCCCCCcceecCC
Q 020787 188 APLIRDGRMEKFYWQP 203 (321)
Q Consensus 188 pALlRpGRfDr~i~~P 203 (321)
|+++- |--.+.+.|
T Consensus 154 ~tI~S--Rc~~i~f~~ 167 (325)
T COG0470 154 PTIRS--RCQRIRFKP 167 (325)
T ss_pred chhhh--cceeeecCC
Confidence 98776 555544443
No 155
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=2.5e-08 Score=106.45 Aligned_cols=130 Identities=21% Similarity=0.242 Sum_probs=96.4
Q ss_pred cccCCCCcHHHHHHHHHHHc----------CCceEEeeccccccc--cCCCcHHHHHHHHHHHHhhhhhcCCceEEEeec
Q 020787 58 IWGGKGQGKSFQTELIFQAM----------GIEPVIMSAGELESE--RAGEPGKLIRERYRTASQVVQNQGKMSCLMIND 125 (321)
Q Consensus 58 L~GPPGcGKTllaravA~e~----------g~~~i~vs~~eL~s~--~~GEser~IR~~F~~A~~~~~~~gaPcILFIDE 125 (321)
|.|+||.|||-+++-+|.+. +..++++.-+.|+.+ |-||-|.+++.+-++..+. .+.||||||
T Consensus 196 LiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~LvAGakyRGeFEeRlk~vl~ev~~~-----~~vILFIDE 270 (786)
T COG0542 196 LVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSLVAGAKYRGEFEERLKAVLKEVEKS-----KNVILFIDE 270 (786)
T ss_pred EecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHHHhccccccCcHHHHHHHHHHHHhcC-----CCeEEEEec
Confidence 88999999999999999764 678889999999975 9999999999999998754 499999999
Q ss_pred ccccCCCCCCCc--cchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCC-----CCccccCCCCCCCcc
Q 020787 126 IDAGLGRFGNTQ--MTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDF-----STIYAPLIRDGRMEK 198 (321)
Q Consensus 126 IDAg~~r~~~t~--~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp-----~~LDpALlRpGRfDr 198 (321)
|+-+.|--.+.+ .+.. .++.-.| . ....-+|+||+-- =.=|+||-| ||-+
T Consensus 271 iHtiVGAG~~~G~a~DAa-NiLKPaL---A-----------------RGeL~~IGATT~~EYRk~iEKD~AL~R--RFQ~ 327 (786)
T COG0542 271 IHTIVGAGATEGGAMDAA-NLLKPAL---A-----------------RGELRCIGATTLDEYRKYIEKDAALER--RFQK 327 (786)
T ss_pred hhhhcCCCcccccccchh-hhhHHHH---h-----------------cCCeEEEEeccHHHHHHHhhhchHHHh--cCce
Confidence 999665322111 1110 1111111 0 2346788887643 345999999 9987
Q ss_pred ee-cCCCHHHHHHHHHHH
Q 020787 199 FY-WQPNLEDILNIVHRM 215 (321)
Q Consensus 199 ~i-~~Pd~~~R~~Il~~~ 215 (321)
.. -.|+.++=..||+.+
T Consensus 328 V~V~EPs~e~ti~ILrGl 345 (786)
T COG0542 328 VLVDEPSVEDTIAILRGL 345 (786)
T ss_pred eeCCCCCHHHHHHHHHHH
Confidence 44 369999999999865
No 156
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.77 E-value=7.1e-08 Score=101.02 Aligned_cols=151 Identities=16% Similarity=0.267 Sum_probs=92.0
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEE----------eec--------------cccccccCCC---cHHHHHHHHHH
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVI----------MSA--------------GELESERAGE---PGKLIRERYRT 107 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~----------vs~--------------~eL~s~~~GE---ser~IR~~F~~ 107 (321)
-+++|||||||||++|+++|+.+.+.--. -.+ .++ ..+-|. +-..||++-+.
T Consensus 40 a~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~g~~~n~-~~~d~~s~~~vd~Ir~l~e~ 118 (620)
T PRK14954 40 GYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDFDAGTSLNI-SEFDAASNNSVDDIRQLREN 118 (620)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHHhccCCCCe-EEecccccCCHHHHHHHHHH
Confidence 58899999999999999999999883100 000 010 011221 23567776555
Q ss_pred HHhhhhhcCCceEEEeecccccCCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCcc
Q 020787 108 ASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIY 187 (321)
Q Consensus 108 A~~~~~~~gaPcILFIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LD 187 (321)
+... ...+.--|++|||+|.... . -...|+..+.+| ...+.+|.+|+.+..|.
T Consensus 119 ~~~~-P~~~~~KVvIIdEad~Lt~-----------~-a~naLLK~LEeP--------------p~~tv~IL~t~~~~kLl 171 (620)
T PRK14954 119 VRYG-PQKGRYRVYIIDEVHMLST-----------A-AFNAFLKTLEEP--------------PPHAIFIFATTELHKIP 171 (620)
T ss_pred HHhh-hhcCCCEEEEEeChhhcCH-----------H-HHHHHHHHHhCC--------------CCCeEEEEEeCChhhhh
Confidence 5311 1124557999999887631 1 123566666643 23455566667789999
Q ss_pred ccCCCCCCCcceec-CCCHHHHHHHHHHHhhcCC--CCHHHHHHhhhCCCC
Q 020787 188 APLIRDGRMEKFYW-QPNLEDILNIVHRMYEKDG--ITKDEVGSIVKTFPN 235 (321)
Q Consensus 188 pALlRpGRfDr~i~-~Pd~~~R~~Il~~~~~~~~--l~~~dl~~L~d~f~g 235 (321)
++++..+ -.+-+ .|+.++-...|+.+++..+ ++.+.+..|+....|
T Consensus 172 ~TI~SRc--~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La~~s~G 220 (620)
T PRK14954 172 ATIASRC--QRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIARKAQG 220 (620)
T ss_pred HHHHhhc--eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCC
Confidence 8887733 22222 3677777777877777554 667777776655544
No 157
>PRK06526 transposase; Provisional
Probab=98.77 E-value=5.3e-09 Score=98.08 Aligned_cols=69 Identities=13% Similarity=0.196 Sum_probs=46.3
Q ss_pred HhccccCCCCcHHHHHHHHHHHc---CCceEEeeccccccccCC-CcHHHHHHHHHHHHhhhhhcCCceEEEeecccccC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM---GIEPVIMSAGELESERAG-EPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGL 130 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~---g~~~i~vs~~eL~s~~~G-Eser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~ 130 (321)
.|+||||||||||.+|.+++.++ |...+.++.+++++.... .....+.+.+.. . ..+.+|+|||++...
T Consensus 100 nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~---l----~~~dlLIIDD~g~~~ 172 (254)
T PRK06526 100 NVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVK---L----GRYPLLIVDEVGYIP 172 (254)
T ss_pred eEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHH---h----ccCCEEEEcccccCC
Confidence 78999999999999999998764 667777777777654310 001111111111 1 268899999999764
No 158
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.76 E-value=7.2e-08 Score=100.57 Aligned_cols=152 Identities=14% Similarity=0.234 Sum_probs=95.1
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEee-c--------------------cccccccC--CCcHHHHHHHHHHHHhh
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMS-A--------------------GELESERA--GEPGKLIRERYRTASQV 111 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs-~--------------------~eL~s~~~--GEser~IR~~F~~A~~~ 111 (321)
-++||||||+|||++|+++|+.+.+.....+ + ++++.-.. --+=..||++...+...
T Consensus 48 a~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~ 127 (598)
T PRK09111 48 AFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYR 127 (598)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhc
Confidence 6899999999999999999999987532221 1 11211000 01134688888776533
Q ss_pred hhhcCCceEEEeecccccCCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccccCC
Q 020787 112 VQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLI 191 (321)
Q Consensus 112 ~~~~gaPcILFIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpALl 191 (321)
. ..+...|++|||+|.+.. .-. ..|+..|.+| ...+.+|.+||.++.|.+.++
T Consensus 128 P-~~a~~KVvIIDEad~Ls~-----------~a~-naLLKtLEeP--------------p~~~~fIl~tte~~kll~tI~ 180 (598)
T PRK09111 128 P-VSARYKVYIIDEVHMLST-----------AAF-NALLKTLEEP--------------PPHVKFIFATTEIRKVPVTVL 180 (598)
T ss_pred h-hcCCcEEEEEEChHhCCH-----------HHH-HHHHHHHHhC--------------CCCeEEEEEeCChhhhhHHHH
Confidence 2 245678999999988732 112 2455555533 346777778888888888865
Q ss_pred CCCCCcceec-CCCHHHHHHHHHHHhhcCC--CCHHHHHHhhhCCCC
Q 020787 192 RDGRMEKFYW-QPNLEDILNIVHRMYEKDG--ITKDEVGSIVKTFPN 235 (321)
Q Consensus 192 RpGRfDr~i~-~Pd~~~R~~Il~~~~~~~~--l~~~dl~~L~d~f~g 235 (321)
- |.-++-+ .|+.++-...|+.++++.+ ++.+.+..|+....|
T Consensus 181 S--Rcq~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a~G 225 (598)
T PRK09111 181 S--RCQRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEG 225 (598)
T ss_pred h--heeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 4 4433322 3788888888887777664 455555555544433
No 159
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.75 E-value=4.7e-08 Score=80.09 Aligned_cols=72 Identities=17% Similarity=0.281 Sum_probs=44.9
Q ss_pred HhccccCCCCcHHHHHHHHHHHc---CCceEEeecccccc----------------------ccCCCcHH--HHHHHHHH
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM---GIEPVIMSAGELES----------------------ERAGEPGK--LIRERYRT 107 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~---g~~~i~vs~~eL~s----------------------~~~GEser--~IR~~F~~ 107 (321)
+++|+||||||||+++..++..+ +-+.+.++..+..+ .+..+... ..+..+..
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERL 80 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHH
Confidence 36899999999999999998887 45555555433221 22222211 11111222
Q ss_pred HHhhhhhcCCceEEEeecccccCC
Q 020787 108 ASQVVQNQGKMSCLMINDIDAGLG 131 (321)
Q Consensus 108 A~~~~~~~gaPcILFIDEIDAg~~ 131 (321)
+. ...|.+|+|||+.+...
T Consensus 81 ~~-----~~~~~~lviDe~~~~~~ 99 (165)
T cd01120 81 RE-----RGGDDLIILDELTRLVR 99 (165)
T ss_pred Hh-----CCCCEEEEEEcHHHHHH
Confidence 21 45899999999998753
No 160
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.74 E-value=5.5e-10 Score=96.42 Aligned_cols=108 Identities=16% Similarity=0.206 Sum_probs=55.3
Q ss_pred hccccCCCCcHHHHHHHHHHHcCCceEEeecc-ccccc-cCCCcHHHHHHHHHHHHh---hhhhcCCceEEEeecccccC
Q 020787 56 LCIWGGKGQGKSFQTELIFQAMGIEPVIMSAG-ELESE-RAGEPGKLIRERYRTASQ---VVQNQGKMSCLMINDIDAGL 130 (321)
Q Consensus 56 LgL~GPPGcGKTllaravA~e~g~~~i~vs~~-eL~s~-~~GEser~IR~~F~~A~~---~~~~~gaPcILFIDEIDAg~ 130 (321)
++|||+||+|||++|+++|+.+|..|.+|... ++.-. ..|.+ +|+.... ..+-----.|+|+|||...-
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~------v~~~~~~~f~~~~GPif~~ill~DEiNrap 75 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFP------VYDQETGEFEFRPGPIFTNILLADEINRAP 75 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEE------EEETTTTEEEEEE-TT-SSEEEEETGGGS-
T ss_pred EeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeee------eeccCCCeeEeecChhhhceeeecccccCC
Confidence 68999999999999999999999999998763 33311 11110 1111000 00000013599999999876
Q ss_pred CCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCC
Q 020787 131 GRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFS 184 (321)
Q Consensus 131 ~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~ 184 (321)
+| +++.|++.|- ...|.++|.-- +.-+...||||-|..+
T Consensus 76 pk------------tQsAlLeam~-Er~Vt~~g~~~--~lp~pf~ViATqNp~e 114 (131)
T PF07726_consen 76 PK------------TQSALLEAME-ERQVTIDGQTY--PLPDPFFVIATQNPVE 114 (131)
T ss_dssp HH------------HHHHHHHHHH-HSEEEETTEEE--E--SS-EEEEEE-TT-
T ss_pred HH------------HHHHHHHHHH-cCeEEeCCEEE--ECCCcEEEEEecCccc
Confidence 54 3445666553 12355555211 2124578899999766
No 161
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.72 E-value=8.2e-08 Score=100.86 Aligned_cols=156 Identities=15% Similarity=0.213 Sum_probs=87.2
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEE-eeccc-------------c---ccccCCCcHHHHHHHHHHHHhhhh----
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVI-MSAGE-------------L---ESERAGEPGKLIRERYRTASQVVQ---- 113 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~-vs~~e-------------L---~s~~~GEser~IR~~F~~A~~~~~---- 113 (321)
+|+|+||||||||++++++|++++..++. .++.. + ++.+ -..-+.+++....|.....
T Consensus 112 illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~~~~~~~~~~~~~s~~~~~~~~-~s~~~~F~~fl~~a~~~~~~~g~ 190 (637)
T TIGR00602 112 ILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTLPDFQKNDHKVTLSLESCFSNF-QSQIEVFSEFLLRATNKLQMLGD 190 (637)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhhhcccccccccchhhhhccccc-cchHHHHHHHHHHHHhhhccccc
Confidence 69999999999999999999999976644 21110 0 1111 1223445555555542110
Q ss_pred -hcCCceEEEeecccccCCCCCCCccchhhHHHHHHHHh-hcCCCCccccCccccccCCCCCccEEEeeCCC--------
Q 020787 114 -NQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMN-LSDNPTRVSIGQDWRESDITNRIPIIFTGNDF-------- 183 (321)
Q Consensus 114 -~~gaPcILFIDEIDAg~~r~~~t~~~v~~q~V~~tLl~-llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp-------- 183 (321)
..+...||||||||....+. ++.+ ..+|. ... + ..++|+|+++|.-
T Consensus 191 ~~~~~~~IILIDEiPn~~~r~--------~~~l-q~lLr~~~~--------------e-~~~~pLI~I~TE~~~~~~~~~ 246 (637)
T TIGR00602 191 DLMTDKKIILVEDLPNQFYRD--------TRAL-HEILRWKYV--------------S-IGRCPLVFIITESLEGDNNQR 246 (637)
T ss_pred ccCCceeEEEeecchhhchhh--------HHHH-HHHHHHHhh--------------c-CCCceEEEEecCCcccccccc
Confidence 12467899999999876441 1122 22332 211 1 3468888876632
Q ss_pred CC-------ccccCCCCCCCcceecCC-CHHHHHHHHHHHhhcC------C--C-CHHHHHHhhhCCCC
Q 020787 184 ST-------IYAPLIRDGRMEKFYWQP-NLEDILNIVHRMYEKD------G--I-TKDEVGSIVKTFPN 235 (321)
Q Consensus 184 ~~-------LDpALlRpGRfDr~i~~P-d~~~R~~Il~~~~~~~------~--l-~~~dl~~L~d~f~g 235 (321)
+. |.++|+-.-|...+-+-| +...-...|+.+++.. . + +.+.+..|+..-.|
T Consensus 247 ~~~f~~~~lL~~eLls~~rv~~I~FnPia~t~l~K~L~rIl~~E~~~~~~~~~~p~~~~l~~I~~~s~G 315 (637)
T TIGR00602 247 RLLFPAETIMNKEILEEPRVSNISFNPIAPTIMKKFLNRIVTIEAKKNGEKIKVPKKTSVELLCQGCSG 315 (637)
T ss_pred ccccchhcccCHhHhcccceeEEEeCCCCHHHHHHHHHHHHHhhhhccccccccCCHHHHHHHHHhCCC
Confidence 11 335676444555444445 6666566666555432 1 2 34677777763333
No 162
>PRK09183 transposase/IS protein; Provisional
Probab=98.71 E-value=9.3e-09 Score=96.28 Aligned_cols=70 Identities=16% Similarity=0.160 Sum_probs=48.2
Q ss_pred HhccccCCCCcHHHHHHHHHHH---cCCceEEeeccccccccCC-CcHHHHHHHHHHHHhhhhhcCCceEEEeecccccC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQA---MGIEPVIMSAGELESERAG-EPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGL 130 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e---~g~~~i~vs~~eL~s~~~G-Eser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~ 130 (321)
.++|+||||||||+|+.+++.+ .|..+..++++++...+.. ..+..+...|.... ..|++|+|||++...
T Consensus 104 ~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~~------~~~dlLiiDdlg~~~ 177 (259)
T PRK09183 104 NIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRGV------MAPRLLIIDEIGYLP 177 (259)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHHh------cCCCEEEEcccccCC
Confidence 6889999999999999999755 4777777788887754321 11112334444321 268899999997753
No 163
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=98.71 E-value=1.8e-08 Score=98.29 Aligned_cols=81 Identities=16% Similarity=0.220 Sum_probs=51.8
Q ss_pred eEEEeecccccCCCCCCCccchhhHHHHHHHHhhcCCC-CccccCccccccCCCCCccEEEeeCCCC-CccccCCCCCCC
Q 020787 119 SCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNP-TRVSIGQDWRESDITNRIPIIFTGNDFS-TIYAPLIRDGRM 196 (321)
Q Consensus 119 cILFIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~-~~vql~g~~~~~~~~~~V~VIaaTNrp~-~LDpALlRpGRf 196 (321)
-+||||||+..-+ .+++.|++.|+.- ..++.+|. ......++.+|+|+|-.+ .+.++|+. ||
T Consensus 130 GiL~lDEInrl~~------------~~q~~Lle~mee~~v~v~r~G~--~~~~p~rfiviAt~NP~e~~l~~aLld--RF 193 (334)
T PRK13407 130 GYLYIDEVNLLED------------HIVDLLLDVAQSGENVVEREGL--SIRHPARFVLVGSGNPEEGELRPQLLD--RF 193 (334)
T ss_pred CeEEecChHhCCH------------HHHHHHHHHHHcCCeEEEECCe--EEecCCCEEEEecCCcccCCCCHHHHh--hc
Confidence 4899999998632 3455677776532 12333442 111123677777888544 57778887 88
Q ss_pred cceecC--C-CHHHHHHHHHHH
Q 020787 197 EKFYWQ--P-NLEDILNIVHRM 215 (321)
Q Consensus 197 Dr~i~~--P-d~~~R~~Il~~~ 215 (321)
.-.+.+ | +.++|.+|++..
T Consensus 194 ~~~v~v~~~~~~~e~~~il~~~ 215 (334)
T PRK13407 194 GLSVEVRSPRDVETRVEVIRRR 215 (334)
T ss_pred ceEEEcCCCCcHHHHHHHHHHh
Confidence 877765 3 558999999764
No 164
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=6.5e-08 Score=95.39 Aligned_cols=135 Identities=16% Similarity=0.308 Sum_probs=88.5
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCc-----eEEeecc----------cccc-----ccCCCcHHHHHHHHHHHHhhhhh
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIE-----PVIMSAG----------ELES-----ERAGEPGKLIRERYRTASQVVQN 114 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~-----~i~vs~~----------eL~s-----~~~GEser~IR~~F~~A~~~~~~ 114 (321)
.+.||||||||||..++-+++++.-. ++.|++- +|.+ +..|-|-.. .|+.-.+....
T Consensus 44 n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~~~p~~g~~~~~---~~~~l~~~~~~ 120 (366)
T COG1474 44 NIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKLGKVPLTGDSSLE---ILKRLYDNLSK 120 (366)
T ss_pred cEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHcCCCCCCCCchHH---HHHHHHHHHHh
Confidence 48899999999999999999998765 7888884 3444 223444443 33333344444
Q ss_pred cCCceEEEeecccccCCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCC---CccccCC
Q 020787 115 QGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFS---TIYAPLI 191 (321)
Q Consensus 115 ~gaPcILFIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~---~LDpALl 191 (321)
.+..-||.+||+|.+..+.+ ..|.+++.-+ ... ..+|-||+.+|..+ .|||-+.
T Consensus 121 ~~~~~IvvLDEid~L~~~~~------------~~LY~L~r~~----------~~~-~~~v~vi~i~n~~~~~~~ld~rv~ 177 (366)
T COG1474 121 KGKTVIVILDEVDALVDKDG------------EVLYSLLRAP----------GEN-KVKVSIIAVSNDDKFLDYLDPRVK 177 (366)
T ss_pred cCCeEEEEEcchhhhccccc------------hHHHHHHhhc----------ccc-ceeEEEEEEeccHHHHHHhhhhhh
Confidence 67899999999999986532 2455565422 111 35788899999875 5666544
Q ss_pred CCCCCcceecCC-CHHHHHHHHHHH
Q 020787 192 RDGRMEKFYWQP-NLEDILNIVHRM 215 (321)
Q Consensus 192 RpGRfDr~i~~P-d~~~R~~Il~~~ 215 (321)
..=.....++.| +.++-.+||+.-
T Consensus 178 s~l~~~~I~F~pY~a~el~~Il~~R 202 (366)
T COG1474 178 SSLGPSEIVFPPYTAEELYDILRER 202 (366)
T ss_pred hccCcceeeeCCCCHHHHHHHHHHH
Confidence 311111233446 889999999643
No 165
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.67 E-value=2.3e-07 Score=95.79 Aligned_cols=146 Identities=16% Similarity=0.255 Sum_probs=90.8
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCc------------------------eEEeeccccccccCCCcHHHHHHHHHHHHh
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIE------------------------PVIMSAGELESERAGEPGKLIRERYRTASQ 110 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~------------------------~i~vs~~eL~s~~~GEser~IR~~F~~A~~ 110 (321)
.+++|||||||||++|+++|+.+.+. ++.+++++- -+=..||++-..+..
T Consensus 38 ayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~eldaas~------~gId~IRelie~~~~ 111 (535)
T PRK08451 38 AYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDIIEMDAASN------RGIDDIRELIEQTKY 111 (535)
T ss_pred eEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEEEeccccc------cCHHHHHHHHHHHhh
Confidence 56899999999999999999998431 222222110 012466766654431
Q ss_pred hhhhcCCceEEEeecccccCCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccccC
Q 020787 111 VVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPL 190 (321)
Q Consensus 111 ~~~~~gaPcILFIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpAL 190 (321)
. ...+.--|++|||+|.... .....|+..+..| .+.+.+|.+||++..|.+++
T Consensus 112 ~-P~~~~~KVvIIDEad~Lt~------------~A~NALLK~LEEp--------------p~~t~FIL~ttd~~kL~~tI 164 (535)
T PRK08451 112 K-PSMARFKIFIIDEVHMLTK------------EAFNALLKTLEEP--------------PSYVKFILATTDPLKLPATI 164 (535)
T ss_pred C-cccCCeEEEEEECcccCCH------------HHHHHHHHHHhhc--------------CCceEEEEEECChhhCchHH
Confidence 1 1113346999999977632 1122455555532 24677777888899999987
Q ss_pred CCCCCCcceec-CCCHHHHHHHHHHHhhcCC--CCHHHHHHhhhCCCC
Q 020787 191 IRDGRMEKFYW-QPNLEDILNIVHRMYEKDG--ITKDEVGSIVKTFPN 235 (321)
Q Consensus 191 lRpGRfDr~i~-~Pd~~~R~~Il~~~~~~~~--l~~~dl~~L~d~f~g 235 (321)
+- |.-++-+ .++.++-...++.+++..+ ++.+.+..|+....|
T Consensus 165 ~S--Rc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s~G 210 (535)
T PRK08451 165 LS--RTQHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNG 210 (535)
T ss_pred Hh--hceeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 76 5544434 3677777777777777655 456666666665444
No 166
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.65 E-value=4e-07 Score=82.91 Aligned_cols=156 Identities=15% Similarity=0.176 Sum_probs=81.4
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCc-eEE--eec-----cc----cccc----cCCCcH-HHHHHHHHHHHhhhhhcCC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIE-PVI--MSA-----GE----LESE----RAGEPG-KLIRERYRTASQVVQNQGK 117 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~-~i~--vs~-----~e----L~s~----~~GEse-r~IR~~F~~A~~~~~~~ga 117 (321)
+++|+||||+|||++++.+++++... ++. +.. .+ |.+. ..|.+. ..++.+......... .++
T Consensus 45 ~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~-~~~ 123 (269)
T TIGR03015 45 FILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFA-AGK 123 (269)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHh-CCC
Confidence 57899999999999999999997632 221 111 11 1111 112221 233333333322222 578
Q ss_pred ceEEEeecccccCCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCC---ccc----cC
Q 020787 118 MSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFST---IYA----PL 190 (321)
Q Consensus 118 PcILFIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~---LDp----AL 190 (321)
+++|+|||+|..... .......|.+... +....++|+.++ .|+. +.. ++
T Consensus 124 ~~vliiDe~~~l~~~---------~~~~l~~l~~~~~--------------~~~~~~~vvl~g-~~~~~~~l~~~~~~~l 179 (269)
T TIGR03015 124 RALLVVDEAQNLTPE---------LLEELRMLSNFQT--------------DNAKLLQIFLVG-QPEFRETLQSPQLQQL 179 (269)
T ss_pred CeEEEEECcccCCHH---------HHHHHHHHhCccc--------------CCCCeEEEEEcC-CHHHHHHHcCchhHHH
Confidence 999999999986321 1111122322211 102345555554 3332 111 12
Q ss_pred CCCCCCcceecC--CCHHHHHHHHHHHhhc------CCCCHHHHHHhhhCCCCCc
Q 020787 191 IRDGRMEKFYWQ--PNLEDILNIVHRMYEK------DGITKDEVGSIVKTFPNQA 237 (321)
Q Consensus 191 lRpGRfDr~i~~--Pd~~~R~~Il~~~~~~------~~l~~~dl~~L~d~f~gq~ 237 (321)
.+ |+...+.+ .+.++-.++++..++. ..++.+.+..|.+...|-+
T Consensus 180 ~~--r~~~~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p 232 (269)
T TIGR03015 180 RQ--RIIASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIP 232 (269)
T ss_pred Hh--heeeeeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcc
Confidence 22 44444444 3778877777655542 2477788888877666644
No 167
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.65 E-value=2.8e-08 Score=102.85 Aligned_cols=151 Identities=15% Similarity=0.150 Sum_probs=88.8
Q ss_pred HhccccCCCCcHHHHHHHHHHHcC---CceEEeeccccc-----cccCCCc----HHHHHHHHHHHHhhhhhcCCceEEE
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMG---IEPVIMSAGELE-----SERAGEP----GKLIRERYRTASQVVQNQGKMSCLM 122 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g---~~~i~vs~~eL~-----s~~~GEs----er~IR~~F~~A~~~~~~~gaPcILF 122 (321)
-++|+|++||||+++|+++..... .+|+.|+++.+- +.+.|.- ..--...|+.| ....||
T Consensus 350 pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~~~~~elfg~~~~~~~~~~~g~~~~a--------~~GtL~ 421 (638)
T PRK11388 350 PVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDEALAEEFLGSDRTDSENGRLSKFELA--------HGGTLF 421 (638)
T ss_pred CEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChHHHHHHhcCCCCcCccCCCCCceeEC--------CCCEEE
Confidence 588999999999999999988654 699999987663 2333321 00000112222 457899
Q ss_pred eecccccCCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccccCCCCCCCcc----
Q 020787 123 INDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEK---- 198 (321)
Q Consensus 123 IDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpALlRpGRfDr---- 198 (321)
|||||..-. .++..|+..+++.....+++. ....-++-||+|||+.- ..+...|+|.+
T Consensus 422 ldei~~l~~------------~~Q~~Ll~~l~~~~~~~~~~~---~~~~~~~riI~~t~~~l---~~~~~~~~f~~dL~~ 483 (638)
T PRK11388 422 LEKVEYLSP------------ELQSALLQVLKTGVITRLDSR---RLIPVDVRVIATTTADL---AMLVEQNRFSRQLYY 483 (638)
T ss_pred EcChhhCCH------------HHHHHHHHHHhcCcEEeCCCC---ceEEeeEEEEEeccCCH---HHHHhcCCChHHHhh
Confidence 999999643 244556666664322222220 01112577899998653 35566677754
Q ss_pred -----eecCCCHHHHH-HHH---HHHhh--------cCCCCHHHHHHhhh
Q 020787 199 -----FYWQPNLEDIL-NIV---HRMYE--------KDGITKDEVGSIVK 231 (321)
Q Consensus 199 -----~i~~Pd~~~R~-~Il---~~~~~--------~~~l~~~dl~~L~d 231 (321)
.|.+|...+|. +|- +.+++ ...++.+.+..|..
T Consensus 484 ~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~ 533 (638)
T PRK11388 484 ALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALARLVS 533 (638)
T ss_pred hhceeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHHHHHHHHc
Confidence 34468877774 332 22221 12356666666654
No 168
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.64 E-value=1e-07 Score=77.20 Aligned_cols=97 Identities=15% Similarity=0.217 Sum_probs=60.3
Q ss_pred HhccccCCCCcHHHHHHHHHHHc--------CCceEEeecccccc--------------ccC-CCcHHHHHHHHHHHHhh
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM--------GIEPVIMSAGELES--------------ERA-GEPGKLIRERYRTASQV 111 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~--------g~~~i~vs~~eL~s--------------~~~-GEser~IR~~F~~A~~~ 111 (321)
.+.|+||||||||++++.++.++ ..+++.+..+.--+ .-. +.+...+.+.+..+.+.
T Consensus 6 ~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l~~ 85 (131)
T PF13401_consen 6 ILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDALDR 85 (131)
T ss_dssp -EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHHHH
T ss_pred ccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHHHh
Confidence 56899999999999999999998 78888877743331 111 12233333444444332
Q ss_pred hhhcCCceEEEeecccccCCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCC
Q 020787 112 VQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGND 182 (321)
Q Consensus 112 ~~~~gaPcILFIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNr 182 (321)
....+|+|||+|.+. + +.+...|..++| ..+++||.+++.
T Consensus 86 ----~~~~~lviDe~~~l~-~----------~~~l~~l~~l~~----------------~~~~~vvl~G~~ 125 (131)
T PF13401_consen 86 ----RRVVLLVIDEADHLF-S----------DEFLEFLRSLLN----------------ESNIKVVLVGTP 125 (131)
T ss_dssp ----CTEEEEEEETTHHHH-T----------HHHHHHHHHHTC----------------SCBEEEEEEESS
T ss_pred ----cCCeEEEEeChHhcC-C----------HHHHHHHHHHHh----------------CCCCeEEEEECh
Confidence 234699999999964 1 234445655555 246777777664
No 169
>PRK04132 replication factor C small subunit; Provisional
Probab=98.64 E-value=3.7e-07 Score=98.61 Aligned_cols=144 Identities=17% Similarity=0.193 Sum_probs=104.9
Q ss_pred ccc--CCCCcHHHHHHHHHHHc-----CCceEEeeccccccccCCCcHHHHHHHHHHHHhhhhhcC-CceEEEeeccccc
Q 020787 58 IWG--GKGQGKSFQTELIFQAM-----GIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQG-KMSCLMINDIDAG 129 (321)
Q Consensus 58 L~G--PPGcGKTllaravA~e~-----g~~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~~g-aPcILFIDEIDAg 129 (321)
..| |++.|||++|+|+|+++ +.+++.+++++--+ -..||++-.++.......+ +.-|+||||+|..
T Consensus 569 ~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rg------id~IR~iIk~~a~~~~~~~~~~KVvIIDEaD~L 642 (846)
T PRK04132 569 IGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERG------INVIREKVKEFARTKPIGGASFKIIFLDEADAL 642 (846)
T ss_pred hcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCccc------HHHHHHHHHHHHhcCCcCCCCCEEEEEECcccC
Confidence 457 99999999999999998 67899999997432 3478888877654421111 3479999999997
Q ss_pred CCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccccCCCCCCCcceec-CCCHHHH
Q 020787 130 LGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYW-QPNLEDI 208 (321)
Q Consensus 130 ~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpALlRpGRfDr~i~-~Pd~~~R 208 (321)
.. .-+..|+..|..| ..++++|.+||.++.|.|+|+- |.-.+-+ .|+.++-
T Consensus 643 t~------------~AQnALLk~lEep--------------~~~~~FILi~N~~~kIi~tIrS--RC~~i~F~~ls~~~i 694 (846)
T PRK04132 643 TQ------------DAQQALRRTMEMF--------------SSNVRFILSCNYSSKIIEPIQS--RCAIFRFRPLRDEDI 694 (846)
T ss_pred CH------------HHHHHHHHHhhCC--------------CCCeEEEEEeCChhhCchHHhh--hceEEeCCCCCHHHH
Confidence 42 1223466666532 3578999999999999999885 6544444 3677888
Q ss_pred HHHHHHHhhcCC--CCHHHHHHhhhCCCC
Q 020787 209 LNIVHRMYEKDG--ITKDEVGSIVKTFPN 235 (321)
Q Consensus 209 ~~Il~~~~~~~~--l~~~dl~~L~d~f~g 235 (321)
..+|+.+....+ ++.+.+..++....|
T Consensus 695 ~~~L~~I~~~Egi~i~~e~L~~Ia~~s~G 723 (846)
T PRK04132 695 AKRLRYIAENEGLELTEEGLQAILYIAEG 723 (846)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHcCC
Confidence 888888777654 567778888776665
No 170
>PRK13531 regulatory ATPase RavA; Provisional
Probab=98.61 E-value=1.1e-07 Score=97.29 Aligned_cols=154 Identities=16% Similarity=0.237 Sum_probs=77.7
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCC--ceE--Eee---ccccccccCCCcHHHH--HHHHHHHHhhhhhcC---CceEEE
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGI--EPV--IMS---AGELESERAGEPGKLI--RERYRTASQVVQNQG---KMSCLM 122 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~--~~i--~vs---~~eL~s~~~GEser~I--R~~F~~A~~~~~~~g---aPcILF 122 (321)
-++|+||||||||++|++++..++. +|. .+. .+||+... +-+.. ...|.... +| ...+||
T Consensus 41 hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~l---~i~~~~~~g~f~r~~-----~G~L~~A~lLf 112 (498)
T PRK13531 41 SVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPL---SIQALKDEGRYQRLT-----SGYLPEAEIVF 112 (498)
T ss_pred CEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCcH---HHhhhhhcCchhhhc-----CCccccccEEe
Confidence 6789999999999999999998764 233 222 33443211 01111 12333211 12 345999
Q ss_pred eecccccCCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccE-EEeeCCCCC---ccccCCCCCCCcc
Q 020787 123 INDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPI-IFTGNDFST---IYAPLIRDGRMEK 198 (321)
Q Consensus 123 IDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~V-IaaTNrp~~---LDpALlRpGRfDr 198 (321)
+|||...- ..+...|++.|.. ..|..+|. ..+ . ..++ ++|||.... ..+||.= ||--
T Consensus 113 LDEI~ras------------p~~QsaLLeam~E-r~~t~g~~--~~~-l-p~rfiv~ATN~LPE~g~~leAL~D--RFli 173 (498)
T PRK13531 113 LDEIWKAG------------PAILNTLLTAINE-RRFRNGAH--EEK-I-PMRLLVTASNELPEADSSLEALYD--RMLI 173 (498)
T ss_pred ecccccCC------------HHHHHHHHHHHHh-CeEecCCe--EEe-C-CCcEEEEECCCCcccCCchHHhHh--hEEE
Confidence 99996322 2355677777742 22333331 111 1 3344 446674322 1113332 4422
Q ss_pred eecCC--C-HHHHHHHHHHHhhc--C------CCCHHHHHHhhhCCCC
Q 020787 199 FYWQP--N-LEDILNIVHRMYEK--D------GITKDEVGSIVKTFPN 235 (321)
Q Consensus 199 ~i~~P--d-~~~R~~Il~~~~~~--~------~l~~~dl~~L~d~f~g 235 (321)
.+++| + .++-.+||+..... . -++.+|+..+-..-..
T Consensus 174 ri~vp~l~~~~~e~~lL~~~~~~~~~~~~~~~vis~eel~~lq~~v~~ 221 (498)
T PRK13531 174 RLWLDKVQDKANFRSMLTSQQDENDNPVPASLQITDEEYQQWQKEIGK 221 (498)
T ss_pred EEECCCCCchHHHHHHHHcccccccCCCcccCCCCHHHHHHHHHHhcc
Confidence 34553 3 34456677643211 1 1566777766554433
No 171
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=98.60 E-value=1.1e-06 Score=83.21 Aligned_cols=142 Identities=18% Similarity=0.324 Sum_probs=92.1
Q ss_pred HhccccCCCCcHHHHHHHHHHHc---CCceEEeeccccccccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeecccccCC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM---GIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLG 131 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~---g~~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~~ 131 (321)
-.+|||+.|||||++++|+..+. |+.+|-|+..+|.+ |-++++.-+. +...-|||+||+-
T Consensus 54 nvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L~~---------l~~l~~~l~~----~~~kFIlf~DDLs---- 116 (249)
T PF05673_consen 54 NVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDLGD---------LPELLDLLRD----RPYKFILFCDDLS---- 116 (249)
T ss_pred ceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHhcc---------HHHHHHHHhc----CCCCEEEEecCCC----
Confidence 57889999999999999999854 77888888888774 3445544432 4578999999864
Q ss_pred CCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccccCC----------CCC-------
Q 020787 132 RFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLI----------RDG------- 194 (321)
Q Consensus 132 r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpALl----------RpG------- 194 (321)
|+.. +. --..|.++|||- .. ..-.+|.|.||+||-.-+..-.. +|+
T Consensus 117 -Fe~~--d~----~yk~LKs~LeGg--------le--~~P~NvliyATSNRRHLv~E~~~d~~~~~~~eih~~d~~eEkl 179 (249)
T PF05673_consen 117 -FEEG--DT----EYKALKSVLEGG--------LE--ARPDNVLIYATSNRRHLVPESFSDREDIQDDEIHPSDTIEEKL 179 (249)
T ss_pred -CCCC--cH----HHHHHHHHhcCc--------cc--cCCCcEEEEEecchhhccchhhhhccCCCccccCcchHHHHHH
Confidence 3311 11 113577788851 11 12468999999999876654322 111
Q ss_pred ----CCccee--cCCCHHHHHHHHHHHhhcCC--CCHHHHHHhh
Q 020787 195 ----RMEKFY--WQPNLEDILNIVHRMYEKDG--ITKDEVGSIV 230 (321)
Q Consensus 195 ----RfDr~i--~~Pd~~~R~~Il~~~~~~~~--l~~~dl~~L~ 230 (321)
||--.+ +.|+.++=++|++.+.+..+ ++.+++.+-+
T Consensus 180 SLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~~~A 223 (249)
T PF05673_consen 180 SLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEEELRQEA 223 (249)
T ss_pred hHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 333322 24788888888887776554 4445555444
No 172
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.59 E-value=1.3e-07 Score=91.13 Aligned_cols=64 Identities=25% Similarity=0.441 Sum_probs=47.4
Q ss_pred HhccccCCCCcHHHHHHHHHHHc---CCceEEeeccccccccCCCcHHHHHHHH-----HHHHhhhhhcCCceEEEeecc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM---GIEPVIMSAGELESERAGEPGKLIRERY-----RTASQVVQNQGKMSCLMINDI 126 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~---g~~~i~vs~~eL~s~~~GEser~IR~~F-----~~A~~~~~~~gaPcILFIDEI 126 (321)
.|.||||||||||+|+.|+|+++ |.+...++.++++... +..| .+..+.+ .+..+|+||||
T Consensus 158 gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~l--------k~~~~~~~~~~~l~~l---~~~dlLiIDDi 226 (306)
T PRK08939 158 GLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIREL--------KNSISDGSVKEKIDAV---KEAPVLMLDDI 226 (306)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHH--------HHHHhcCcHHHHHHHh---cCCCEEEEecC
Confidence 58899999999999999999998 7888888888877543 1111 1111222 27889999999
Q ss_pred ccc
Q 020787 127 DAG 129 (321)
Q Consensus 127 DAg 129 (321)
.+-
T Consensus 227 G~e 229 (306)
T PRK08939 227 GAE 229 (306)
T ss_pred CCc
Confidence 774
No 173
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=4.3e-07 Score=90.02 Aligned_cols=90 Identities=24% Similarity=0.222 Sum_probs=65.1
Q ss_pred CceEEEeecccccCCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEe----eCCCCCccccCCC
Q 020787 117 KMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFT----GNDFSTIYAPLIR 192 (321)
Q Consensus 117 aPcILFIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaa----TNrp~~LDpALlR 192 (321)
..-|+||||||.+|.|.+..+.++..+=|+.-||-+..|-| |+- -|.... +.++..|++ ...|++|-|.|-
T Consensus 250 ~~GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGst-V~T--KyG~Vk-TdHILFIasGAFh~sKPSDLiPELQ- 324 (444)
T COG1220 250 QNGIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGST-VST--KYGPVK-TDHILFIASGAFHVAKPSDLIPELQ- 324 (444)
T ss_pred hcCeEEEehhhHHHhcCCCCCCCcchhhhcccccccccCce-eec--cccccc-cceEEEEecCceecCChhhcChhhc-
Confidence 57899999999999887633336766778888888887654 321 233333 567888886 478999999995
Q ss_pred CCCCcceecC--CCHHHHHHHH
Q 020787 193 DGRMEKFYWQ--PNLEDILNIV 212 (321)
Q Consensus 193 pGRfDr~i~~--Pd~~~R~~Il 212 (321)
|||--.+.+ =+.++=..||
T Consensus 325 -GRfPIRVEL~~Lt~~Df~rIL 345 (444)
T COG1220 325 -GRFPIRVELDALTKEDFERIL 345 (444)
T ss_pred -CCCceEEEcccCCHHHHHHHH
Confidence 799877765 3666666666
No 174
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=98.58 E-value=2.5e-07 Score=89.53 Aligned_cols=131 Identities=15% Similarity=0.222 Sum_probs=77.7
Q ss_pred HhccccCCCCcHHHHHHHHHHHcC---CceEEeeccccccccCCCcHHHHHHHHHH-------HHhh----hhhcCCceE
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMG---IEPVIMSAGELESERAGEPGKLIRERYRT-------ASQV----VQNQGKMSC 120 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g---~~~i~vs~~eL~s~~~GEser~IR~~F~~-------A~~~----~~~~gaPcI 120 (321)
-++|+|+|||||+++|+++-.... .+|+.|+++.+-..+ .-.++|-. |... .. ....-.
T Consensus 24 pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~------l~~~lfG~~~g~~~ga~~~~~G~~~-~a~gGt 96 (329)
T TIGR02974 24 PVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENL------LDSELFGHEAGAFTGAQKRHQGRFE-RADGGT 96 (329)
T ss_pred CEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHH------HHHHHhccccccccCcccccCCchh-hCCCCE
Confidence 478999999999999999976554 699999998764321 11223211 1000 00 114678
Q ss_pred EEeecccccCCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccccCCCCCCCcc--
Q 020787 121 LMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEK-- 198 (321)
Q Consensus 121 LFIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpALlRpGRfDr-- 198 (321)
|||||||.+-. .++..|+..+++-..-.+++. .....+|-||+|||..- ..+...|+|..
T Consensus 97 L~Ldei~~L~~------------~~Q~~Ll~~l~~~~~~~~g~~---~~~~~~~RiI~at~~~l---~~~~~~g~fr~dL 158 (329)
T TIGR02974 97 LFLDELATASL------------LVQEKLLRVIEYGEFERVGGS---QTLQVDVRLVCATNADL---PALAAEGRFRADL 158 (329)
T ss_pred EEeCChHhCCH------------HHHHHHHHHHHcCcEEecCCC---ceeccceEEEEechhhH---HHHhhcCchHHHH
Confidence 99999999742 345567777654322222221 11134678999998531 13455666633
Q ss_pred -------eecCCCHHHHHH
Q 020787 199 -------FYWQPNLEDILN 210 (321)
Q Consensus 199 -------~i~~Pd~~~R~~ 210 (321)
.|.+|...+|.+
T Consensus 159 ~~rl~~~~i~lPpLReR~e 177 (329)
T TIGR02974 159 LDRLAFDVITLPPLRERQE 177 (329)
T ss_pred HHHhcchhcCCCchhhhhh
Confidence 344687777654
No 175
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.58 E-value=5.3e-07 Score=88.86 Aligned_cols=133 Identities=14% Similarity=0.187 Sum_probs=82.3
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceE-----------Ee---------------eccccc--cc-cCCC--------c
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPV-----------IM---------------SAGELE--SE-RAGE--------P 97 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i-----------~v---------------s~~eL~--s~-~~GE--------s 97 (321)
-++|+||+|+||+++|.++|+.+-+.-- .+ +-+++. .+ +.+. +
T Consensus 43 A~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~ 122 (365)
T PRK07471 43 AWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVIT 122 (365)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHHHHHHccCCCCeEEEeccccccccccccccc
Confidence 5899999999999999999998744210 00 001111 00 0011 1
Q ss_pred HHHHHHHHHHHHhhhhhcCCceEEEeecccccCCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEE
Q 020787 98 GKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPII 177 (321)
Q Consensus 98 er~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VI 177 (321)
=..||++=+.+.... ..+.|-|++|||+|..-. ... ..|+..+..| ..++.+|
T Consensus 123 VdqiR~l~~~~~~~~-~~~~~kVviIDead~m~~-----------~aa-naLLK~LEep--------------p~~~~~I 175 (365)
T PRK07471 123 VDEVRELISFFGLTA-AEGGWRVVIVDTADEMNA-----------NAA-NALLKVLEEP--------------PARSLFL 175 (365)
T ss_pred HHHHHHHHHHhCcCc-ccCCCEEEEEechHhcCH-----------HHH-HHHHHHHhcC--------------CCCeEEE
Confidence 134666666554332 257899999999997621 112 2455555422 3467788
Q ss_pred EeeCCCCCccccCCCCCCCcceec-CCCHHHHHHHHHHHh
Q 020787 178 FTGNDFSTIYAPLIRDGRMEKFYW-QPNLEDILNIVHRMY 216 (321)
Q Consensus 178 aaTNrp~~LDpALlRpGRfDr~i~-~Pd~~~R~~Il~~~~ 216 (321)
++|++++.|.|.++. |..+.-+ .|+.++-.++|....
T Consensus 176 L~t~~~~~llpti~S--Rc~~i~l~~l~~~~i~~~L~~~~ 213 (365)
T PRK07471 176 LVSHAPARLLPTIRS--RCRKLRLRPLAPEDVIDALAAAG 213 (365)
T ss_pred EEECCchhchHHhhc--cceEEECCCCCHHHHHHHHHHhc
Confidence 899999999877654 7766544 368888888886543
No 176
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=98.57 E-value=2.3e-07 Score=94.44 Aligned_cols=152 Identities=14% Similarity=0.178 Sum_probs=88.0
Q ss_pred HhccccCCCCcHHHHHHHHHHHc---CCceEEeeccccccccCCCcHHHHHHHHHH-------HHhh----hhhcCCceE
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM---GIEPVIMSAGELESERAGEPGKLIRERYRT-------ASQV----VQNQGKMSC 120 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~---g~~~i~vs~~eL~s~~~GEser~IR~~F~~-------A~~~----~~~~gaPcI 120 (321)
-++|+|++|||||++|+++.... +.+|+.++++.+-+.+ .-.++|-. |... .. ....-.
T Consensus 221 pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~~~------~~~~lfg~~~~~~~~~~~~~~g~~~-~a~~Gt 293 (534)
T TIGR01817 221 TVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSETL------LESELFGHEKGAFTGAIAQRKGRFE-LADGGT 293 (534)
T ss_pred CEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCHHH------HHHHHcCCCCCccCCCCcCCCCccc-ccCCCe
Confidence 58899999999999999999875 5699999998874321 11222211 1000 00 113568
Q ss_pred EEeecccccCCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccccCCCCCCCcc--
Q 020787 121 LMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEK-- 198 (321)
Q Consensus 121 LFIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpALlRpGRfDr-- 198 (321)
|||||||.+-. .++..|+..+++-....+++. .....++-||+|||..- . .++..|+|..
T Consensus 294 L~ldei~~L~~------------~~Q~~Ll~~l~~~~~~~~~~~---~~~~~~~riI~~s~~~l--~-~~~~~~~f~~~L 355 (534)
T TIGR01817 294 LFLDEIGEISP------------AFQAKLLRVLQEGEFERVGGN---RTLKVDVRLVAATNRDL--E-EAVAKGEFRADL 355 (534)
T ss_pred EEEechhhCCH------------HHHHHHHHHHhcCcEEECCCC---ceEeecEEEEEeCCCCH--H-HHHHcCCCCHHH
Confidence 99999999742 344567777663221112210 11123578899887642 1 2556777754
Q ss_pred -------eecCCCHHHHHH-H---HHHHhh--------cCCCCHHHHHHhhh
Q 020787 199 -------FYWQPNLEDILN-I---VHRMYE--------KDGITKDEVGSIVK 231 (321)
Q Consensus 199 -------~i~~Pd~~~R~~-I---l~~~~~--------~~~l~~~dl~~L~d 231 (321)
.|.+|...+|.+ | ++.+++ ...++.+.+..|..
T Consensus 356 ~~rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~ 407 (534)
T TIGR01817 356 YYRINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPSAIRVLMS 407 (534)
T ss_pred HHHhcCCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHh
Confidence 344676666633 3 332221 12366666666654
No 177
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.57 E-value=1.2e-06 Score=85.94 Aligned_cols=152 Identities=14% Similarity=0.175 Sum_probs=89.6
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCce------EEee----------------ccccc---ccc-C--CC-----cHHHH
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEP------VIMS----------------AGELE---SER-A--GE-----PGKLI 101 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~------i~vs----------------~~eL~---s~~-~--GE-----ser~I 101 (321)
.++|+||+|+|||++|+.+|+.+-+.. .... -+++. .++ . |. +-..|
T Consensus 47 a~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~i 126 (351)
T PRK09112 47 ALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEI 126 (351)
T ss_pred eEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHH
Confidence 589999999999999999999997721 1100 01211 111 0 10 12345
Q ss_pred HHHHHHHHhhhhhcCCceEEEeecccccCCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeC
Q 020787 102 RERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGN 181 (321)
Q Consensus 102 R~~F~~A~~~~~~~gaPcILFIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTN 181 (321)
|++-+...... ..+..-|++|||+|..-. ...+ .|+..+..| ..++.+|..|+
T Consensus 127 R~l~~~l~~~~-~~g~~rVviIDeAd~l~~-----------~aan-aLLk~LEEp--------------p~~~~fiLit~ 179 (351)
T PRK09112 127 RRVGHFLSQTS-GDGNWRIVIIDPADDMNR-----------NAAN-AILKTLEEP--------------PARALFILISH 179 (351)
T ss_pred HHHHHHhhhcc-ccCCceEEEEEchhhcCH-----------HHHH-HHHHHHhcC--------------CCCceEEEEEC
Confidence 55544433222 246788999999998731 1122 355555522 34666777778
Q ss_pred CCCCccccCCCCCCCcceec-CCCHHHHHHHHHHHhhcCCCCHHHHHHhhhCCCC
Q 020787 182 DFSTIYAPLIRDGRMEKFYW-QPNLEDILNIVHRMYEKDGITKDEVGSIVKTFPN 235 (321)
Q Consensus 182 rp~~LDpALlRpGRfDr~i~-~Pd~~~R~~Il~~~~~~~~l~~~dl~~L~d~f~g 235 (321)
.|+.|.|.+ |. |.-.+-+ .|+.++-.++|+......+++.+.+..++....|
T Consensus 180 ~~~~llptI-rS-Rc~~i~l~pl~~~~~~~~L~~~~~~~~~~~~~~~~i~~~s~G 232 (351)
T PRK09112 180 SSGRLLPTI-RS-RCQPISLKPLDDDELKKALSHLGSSQGSDGEITEALLQRSKG 232 (351)
T ss_pred ChhhccHHH-Hh-hccEEEecCCCHHHHHHHHHHhhcccCCCHHHHHHHHHHcCC
Confidence 899998776 44 7743333 3788888888876433333555555555443333
No 178
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.56 E-value=4.8e-08 Score=99.48 Aligned_cols=135 Identities=15% Similarity=0.175 Sum_probs=81.0
Q ss_pred hccccCCCCcHHHHHHHHHHHcCCc-eEEe---ecccc-----ccccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeecc
Q 020787 56 LCIWGGKGQGKSFQTELIFQAMGIE-PVIM---SAGEL-----ESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDI 126 (321)
Q Consensus 56 LgL~GPPGcGKTllaravA~e~g~~-~i~v---s~~eL-----~s~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDEI 126 (321)
++|+|+||+|||.+|+++++.+.-. |+.. ++..| .++..|+ ..+ + +-... ...--+++|||+
T Consensus 239 vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~--~~~----~-~G~l~--~A~~Gil~iDEi 309 (509)
T smart00350 239 ILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVTRDPETRE--FTL----E-GGALV--LADNGVCCIDEF 309 (509)
T ss_pred EEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccceEccCcce--EEe----c-CccEE--ecCCCEEEEech
Confidence 7899999999999999999987543 3221 22222 2221221 000 0 00111 113458999999
Q ss_pred cccCCCCCCCccchhhHHHHHHHHhhcCCCCcccc--CccccccCCCCCccEEEeeCCCC-------------CccccCC
Q 020787 127 DAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSI--GQDWRESDITNRIPIIFTGNDFS-------------TIYAPLI 191 (321)
Q Consensus 127 DAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql--~g~~~~~~~~~~V~VIaaTNrp~-------------~LDpALl 191 (321)
|..-+. ....|++.|...+ +++ .|. ......+.-||+|+|..+ .|+|+|+
T Consensus 310 ~~l~~~------------~q~~L~e~me~~~-i~i~k~G~--~~~l~~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lL 374 (509)
T smart00350 310 DKMDDS------------DRTAIHEAMEQQT-ISIAKAGI--TTTLNARCSVLAAANPIGGRYDPKLTPEENIDLPAPIL 374 (509)
T ss_pred hhCCHH------------HHHHHHHHHhcCE-EEEEeCCE--EEEecCCcEEEEEeCCCCcccCCCcChhhccCCChHHh
Confidence 997432 2334555554221 211 221 111134788999999543 5999999
Q ss_pred CCCCCcceecC---CCHHHHHHHHHHHh
Q 020787 192 RDGRMEKFYWQ---PNLEDILNIVHRMY 216 (321)
Q Consensus 192 RpGRfDr~i~~---Pd~~~R~~Il~~~~ 216 (321)
- |||-.+.+ |+.+.+.+|++.++
T Consensus 375 s--RFdLi~~~~d~~~~~~d~~i~~~i~ 400 (509)
T smart00350 375 S--RFDLLFVVLDEVDEERDRELAKHVV 400 (509)
T ss_pred C--ceeeEEEecCCCChHHHHHHHHHHH
Confidence 8 99986653 99999999997654
No 179
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.56 E-value=1.6e-07 Score=97.60 Aligned_cols=147 Identities=15% Similarity=0.111 Sum_probs=90.1
Q ss_pred cchhhhhHhccccCCCCcHHHHHHHHHHHcCC--ceEEeeccccccccCCCcHHHHHHHHHHHHhh--hhhcC-----Cc
Q 020787 48 IAPVFMASLCIWGGKGQGKSFQTELIFQAMGI--EPVIMSAGELESERAGEPGKLIRERYRTASQV--VQNQG-----KM 118 (321)
Q Consensus 48 ~~p~f~~iLgL~GPPGcGKTllaravA~e~g~--~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~--~~~~g-----aP 118 (321)
|-|. +-.++|.|+||+|||++|+++++.+.. +|+.+..+...+...|.- +++.....- .-..| .-
T Consensus 12 v~p~-~g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~i-----dl~~~~~~g~~~~~~G~L~~A~~ 85 (589)
T TIGR02031 12 VDPS-LGGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGI-----DVEESLAGGQRVTQPGLLDEAPR 85 (589)
T ss_pred cCCC-cceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccch-----hhhhhhhcCcccCCCCCeeeCCC
Confidence 4455 457899999999999999999998764 588777543444444431 111111000 00011 12
Q ss_pred eEEEeecccccCCCCCCCccchhhHHHHHHHHhhcCCCC-ccccCccccccCCCCCccEEEeeCCCC---CccccCCCCC
Q 020787 119 SCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPT-RVSIGQDWRESDITNRIPIIFTGNDFS---TIYAPLIRDG 194 (321)
Q Consensus 119 cILFIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~-~vql~g~~~~~~~~~~V~VIaaTNrp~---~LDpALlRpG 194 (321)
.+||||||+..-+ .++..|++.|+.-. .+.-.|. ......+..||+|+|..+ .|.++|+.
T Consensus 86 GvL~lDEi~rl~~------------~~q~~Ll~al~~g~v~i~r~G~--~~~~p~~f~lIAt~np~e~~g~L~~~Lld-- 149 (589)
T TIGR02031 86 GVLYVDMANLLDD------------GLSNRLLQALDEGVVIVEREGI--SVVHPAKFALIATYDPAEGGGGLPDHLLD-- 149 (589)
T ss_pred CcEeccchhhCCH------------HHHHHHHHHHHcCCeEEEECCC--ceeecCceEEEEecCCccccCCCCHHHHH--
Confidence 4999999998743 34556777776321 1111121 011123577888888765 67788887
Q ss_pred CCcceec---CCCHHHHHHHHHHHh
Q 020787 195 RMEKFYW---QPNLEDILNIVHRMY 216 (321)
Q Consensus 195 RfDr~i~---~Pd~~~R~~Il~~~~ 216 (321)
||+-.+. +|+.++|.+|++..+
T Consensus 150 Rf~l~v~~~~~~~~~er~eil~~~~ 174 (589)
T TIGR02031 150 RLALHVSLEDVASQDLRVEIVRRER 174 (589)
T ss_pred hccCeeecCCCCCHHHHHHHHHHHH
Confidence 8887554 488899999997654
No 180
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=98.54 E-value=8.7e-08 Score=100.11 Aligned_cols=141 Identities=19% Similarity=0.210 Sum_probs=83.8
Q ss_pred HhccccCCCCcHHHHHHHHHHHc-----------------------------------CCceEEeeccccccccCCCc--
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM-----------------------------------GIEPVIMSAGELESERAGEP-- 97 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~-----------------------------------g~~~i~vs~~eL~s~~~GEs-- 97 (321)
.++|+||||||||++||++++.+ ..+|+.+..+-..+...|.-
T Consensus 27 ~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~ 106 (633)
T TIGR02442 27 GVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEEWCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDI 106 (633)
T ss_pred eEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccccChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccH
Confidence 48999999999999999999988 34666665554444455532
Q ss_pred HHHHHH---HHHHHHhhhhhcCCceEEEeecccccCCCCCCCccchhhHHHHHHHHhhcCCCC-ccccCccccccCCCCC
Q 020787 98 GKLIRE---RYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPT-RVSIGQDWRESDITNR 173 (321)
Q Consensus 98 er~IR~---~F~~A~~~~~~~gaPcILFIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~-~vql~g~~~~~~~~~~ 173 (321)
++.++. .|+.- .+. ...-.|||||||+..-+ .++..|++.|+.-. .|.-.|.- .....+
T Consensus 107 ~~~l~~g~~~~~~G-~L~--~A~~GiL~lDEi~~l~~------------~~q~~Ll~~le~g~~~v~r~g~~--~~~~~~ 169 (633)
T TIGR02442 107 ERALREGEKAFQPG-LLA--EAHRGILYIDEVNLLDD------------HLVDVLLDAAAMGVNRVEREGLS--VSHPAR 169 (633)
T ss_pred HHHhhcCCeeecCc-cee--ecCCCeEEeChhhhCCH------------HHHHHHHHHHhcCCEEEEECCce--eeecCC
Confidence 111110 01000 000 00235999999998753 24456777776321 22223311 111246
Q ss_pred ccEEEeeCCC-CCccccCCCCCCCcceecCC---CHHHHHHHHHH
Q 020787 174 IPIIFTGNDF-STIYAPLIRDGRMEKFYWQP---NLEDILNIVHR 214 (321)
Q Consensus 174 V~VIaaTNrp-~~LDpALlRpGRfDr~i~~P---d~~~R~~Il~~ 214 (321)
+.||+|+|-- ..|.++|+- ||+-.+.+| +.++|.+|++.
T Consensus 170 ~~lIat~np~eg~l~~~L~d--R~~l~i~v~~~~~~~~~~~il~~ 212 (633)
T TIGR02442 170 FVLIGTMNPEEGDLRPQLLD--RFGLCVDVAAPRDPEERVEIIRR 212 (633)
T ss_pred eEEEEecCCCCCCCCHHHHh--hcceEEEccCCCchHHHHHHHHH
Confidence 8889998843 256777777 888666653 56778888864
No 181
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=98.54 E-value=2.2e-07 Score=89.51 Aligned_cols=130 Identities=15% Similarity=0.253 Sum_probs=75.2
Q ss_pred HhccccCCCCcHHHHHHHHHHHcC---CceEEeeccccc-----cccCCCcH-------HHHHHHHHHHHhhhhhcCCce
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMG---IEPVIMSAGELE-----SERAGEPG-------KLIRERYRTASQVVQNQGKMS 119 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g---~~~i~vs~~eL~-----s~~~GEse-------r~IR~~F~~A~~~~~~~gaPc 119 (321)
-++|+|+|||||+++|+++-.... .+|+.++++.+- +.+.|... ..-...|..| ..-
T Consensus 31 pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~~~~lfg~~~~~~~g~~~~~~g~l~~a--------~gG 102 (326)
T PRK11608 31 PVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERA--------DGG 102 (326)
T ss_pred CEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHHHHHHccccccccCCcccccCCchhcc--------CCC
Confidence 478999999999999999976654 689999998763 11222110 0001123222 346
Q ss_pred EEEeecccccCCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccccCCCCCCC---
Q 020787 120 CLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRM--- 196 (321)
Q Consensus 120 ILFIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpALlRpGRf--- 196 (321)
.|||||||..-. .++..|++.+++-....+++ ......++-||+|||..- +.|...|+|
T Consensus 103 tL~l~~i~~L~~------------~~Q~~L~~~l~~~~~~~~g~---~~~~~~~~RiI~~s~~~l---~~l~~~g~f~~d 164 (326)
T PRK11608 103 TLFLDELATAPM------------LVQEKLLRVIEYGELERVGG---SQPLQVNVRLVCATNADL---PAMVAEGKFRAD 164 (326)
T ss_pred eEEeCChhhCCH------------HHHHHHHHHHhcCcEEeCCC---CceeeccEEEEEeCchhH---HHHHHcCCchHH
Confidence 799999999753 34456666665322111121 011123678899887631 123344444
Q ss_pred -----c-ceecCCCHHHHHH
Q 020787 197 -----E-KFYWQPNLEDILN 210 (321)
Q Consensus 197 -----D-r~i~~Pd~~~R~~ 210 (321)
. ..|.+|...+|.+
T Consensus 165 L~~~l~~~~i~lPpLReR~e 184 (326)
T PRK11608 165 LLDRLAFDVVQLPPLRERQS 184 (326)
T ss_pred HHHhcCCCEEECCChhhhhh
Confidence 2 2456787777754
No 182
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.52 E-value=2.7e-08 Score=88.42 Aligned_cols=67 Identities=19% Similarity=0.341 Sum_probs=44.2
Q ss_pred HhccccCCCCcHHHHHHHHHHH---cCCceEEeeccccccccCCC-cHHHHHHHHHHHHhhhhhcCCceEEEeecccc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQA---MGIEPVIMSAGELESERAGE-PGKLIRERYRTASQVVQNQGKMSCLMINDIDA 128 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e---~g~~~i~vs~~eL~s~~~GE-ser~IR~~F~~A~~~~~~~gaPcILFIDEIDA 128 (321)
.|.|+||||||||.+|-|++++ .|.+..-++.++|++...-. ......+.++.-. .+.+|+|||+-.
T Consensus 49 ~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~-------~~dlLilDDlG~ 119 (178)
T PF01695_consen 49 NLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLK-------RVDLLILDDLGY 119 (178)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHH-------TSSCEEEETCTS
T ss_pred EEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCccc-------cccEecccccce
Confidence 6999999999999999999875 47888889998887653111 0111112222221 578899999843
No 183
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=98.51 E-value=2.1e-07 Score=75.72 Aligned_cols=105 Identities=21% Similarity=0.271 Sum_probs=54.4
Q ss_pred hccccCCCCcHHHHHHHHHHHcCCceEEeeccccccccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeecccccCCCCCC
Q 020787 56 LCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGN 135 (321)
Q Consensus 56 LgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~~r~~~ 135 (321)
+.||||||||||++|+.+|+.+.-.+-.-....+... .+....=+=| +++|+ ++|||+.+.-... +
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~~~~~~~~vy~~---~~~~~~w~gY---------~~q~v-vi~DD~~~~~~~~-~ 66 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHIGEPTKDSVYTR---NPGDKFWDGY---------QGQPV-VIIDDFGQDNDGY-N 66 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHhccCCCCcEEeC---CCccchhhcc---------CCCcE-EEEeecCcccccc-c
Confidence 3589999999999999999888754422222333221 1111111111 34665 4679988754321 0
Q ss_pred CccchhhHHHHHHHHhhcC-CCCccccCccccccCCCCCccEEEeeC
Q 020787 136 TQMTVNNQIVVGTLMNLSD-NPTRVSIGQDWRESDITNRIPIIFTGN 181 (321)
Q Consensus 136 t~~~v~~q~V~~tLl~llD-~~~~vql~g~~~~~~~~~~V~VIaaTN 181 (321)
. .....|+.+++ +|-.+.+.+.-+....-....||+|||
T Consensus 67 ------~-~~~~~l~~l~s~~~~~~~~a~~~~K~~~~~s~~vi~tsN 106 (107)
T PF00910_consen 67 ------Y-SDESELIRLISSNPFQPNMADLEDKGTPFNSKLVIITSN 106 (107)
T ss_pred ------h-HHHHHHHHHHhcCCcccccccHhhCCCccCCCEEEEcCC
Confidence 1 13446777776 333333322100000112367888888
No 184
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.49 E-value=2.1e-06 Score=81.63 Aligned_cols=150 Identities=15% Similarity=0.159 Sum_probs=90.1
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeeccccc--cccCCC--cHHHHHHHHHHHHhhhhhcCCceEEEeecccccC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELE--SERAGE--PGKLIRERYRTASQVVQNQGKMSCLMINDIDAGL 130 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~--s~~~GE--ser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~ 130 (321)
.+++|||+|+|||.+|+++|+.+-+....-+-+++. ..+-|. +-..||++-+.+.... ..+.--|++|||.|..-
T Consensus 28 a~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~ir~~~~~~~~~p-~~~~~kv~iI~~ad~m~ 106 (313)
T PRK05564 28 AHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDIRNIIEEVNKKP-YEGDKKVIIIYNSEKMT 106 (313)
T ss_pred eEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHHHHHHHHHhcCc-ccCCceEEEEechhhcC
Confidence 678999999999999999999875532111112221 111121 1235777766554321 23566799999987752
Q ss_pred CCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccccCCCCCCCcceec-CCCHHHHH
Q 020787 131 GRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYW-QPNLEDIL 209 (321)
Q Consensus 131 ~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpALlRpGRfDr~i~-~Pd~~~R~ 209 (321)
. .-...|+..+.+| .+++.+|.+|+.++.|.|.++= |--.+.+ .|+.++-.
T Consensus 107 ~------------~a~naLLK~LEep--------------p~~t~~il~~~~~~~ll~TI~S--Rc~~~~~~~~~~~~~~ 158 (313)
T PRK05564 107 E------------QAQNAFLKTIEEP--------------PKGVFIILLCENLEQILDTIKS--RCQIYKLNRLSKEEIE 158 (313)
T ss_pred H------------HHHHHHHHHhcCC--------------CCCeEEEEEeCChHhCcHHHHh--hceeeeCCCcCHHHHH
Confidence 1 1122466655543 3567777777889999998765 3333333 36777766
Q ss_pred HHHHHHhhcCCCCHHHHHHhhhCCCC
Q 020787 210 NIVHRMYEKDGITKDEVGSIVKTFPN 235 (321)
Q Consensus 210 ~Il~~~~~~~~l~~~dl~~L~d~f~g 235 (321)
..|+..+. .++.+++..++.-..|
T Consensus 159 ~~l~~~~~--~~~~~~~~~l~~~~~g 182 (313)
T PRK05564 159 KFISYKYN--DIKEEEKKSAIAFSDG 182 (313)
T ss_pred HHHHHHhc--CCCHHHHHHHHHHcCC
Confidence 66655443 4666666666543333
No 185
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=98.49 E-value=6.5e-07 Score=89.90 Aligned_cols=158 Identities=23% Similarity=0.322 Sum_probs=94.8
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCC-----ceEEeeccccccccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeeccccc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGI-----EPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAG 129 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~-----~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg 129 (321)
=|.||||.|+|||.|..|++++... .++.+++..+.+.++ ..+|+ ...+..|.+-+-.+++||||+.+
T Consensus 115 plfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v----~a~~~---~~~~~Fk~~y~~dlllIDDiq~l 187 (408)
T COG0593 115 PLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFV----KALRD---NEMEKFKEKYSLDLLLIDDIQFL 187 (408)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHH----HHHHh---hhHHHHHHhhccCeeeechHhHh
Confidence 3789999999999999999988754 455566655543322 12221 11111111114578999999998
Q ss_pred CCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCC----CccccCCCCCCCcc--e--ec
Q 020787 130 LGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFS----TIYAPLIRDGRMEK--F--YW 201 (321)
Q Consensus 130 ~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~----~LDpALlRpGRfDr--~--i~ 201 (321)
.++.. + ...+.-++-.+.++ .+ -||.|..|+. .+.|-|+- ||+- . |.
T Consensus 188 ~gk~~-~-----qeefFh~FN~l~~~----------------~k-qIvltsdr~P~~l~~~~~rL~S--R~~~Gl~~~I~ 242 (408)
T COG0593 188 AGKER-T-----QEEFFHTFNALLEN----------------GK-QIVLTSDRPPKELNGLEDRLRS--RLEWGLVVEIE 242 (408)
T ss_pred cCChh-H-----HHHHHHHHHHHHhc----------------CC-EEEEEcCCCchhhccccHHHHH--HHhceeEEeeC
Confidence 87522 1 12333343333221 12 4666654443 34455555 8886 2 23
Q ss_pred CCCHHHHHHHHHHHhhcCC--CCHHHHHHhhhCCCCCcchhhHHH
Q 020787 202 QPNLEDILNIVHRMYEKDG--ITKDEVGSIVKTFPNQALDFYGAL 244 (321)
Q Consensus 202 ~Pd~~~R~~Il~~~~~~~~--l~~~dl~~L~d~f~gq~idf~gAl 244 (321)
.|+.+.|.+||+......+ ++.+-+.-++..+..-=-+..|||
T Consensus 243 ~Pd~e~r~aiL~kka~~~~~~i~~ev~~~la~~~~~nvReLegaL 287 (408)
T COG0593 243 PPDDETRLAILRKKAEDRGIEIPDEVLEFLAKRLDRNVRELEGAL 287 (408)
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccHHHHHHHH
Confidence 5999999999998777665 566777777777665433445554
No 186
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.48 E-value=3.2e-07 Score=93.21 Aligned_cols=130 Identities=18% Similarity=0.202 Sum_probs=79.5
Q ss_pred HhccccCCCCcHHHHHHHHHHHc---CCceEEeecccccccc-----CCCcH-------HHHHHHHHHHHhhhhhcCCce
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM---GIEPVIMSAGELESER-----AGEPG-------KLIRERYRTASQVVQNQGKMS 119 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~---g~~~i~vs~~eL~s~~-----~GEse-------r~IR~~F~~A~~~~~~~gaPc 119 (321)
-++|+|++|||||++|+++.... +.+|+.++++.+-+.+ .|... +.-...|+.| ..-
T Consensus 212 pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~e~~lfG~~~g~~~ga~~~~~g~~~~a--------~gG 283 (509)
T PRK05022 212 NVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLAESELFGHVKGAFTGAISNRSGKFELA--------DGG 283 (509)
T ss_pred cEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHHHHHHhcCccccccCCCcccCCcchhhc--------CCC
Confidence 56799999999999999998874 4699999998774321 11000 0000123222 356
Q ss_pred EEEeecccccCCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccccCCCCCCCcce
Q 020787 120 CLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKF 199 (321)
Q Consensus 120 ILFIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpALlRpGRfDr~ 199 (321)
.|||||||.+-. .++..|+..+++-....+++. .....++-||+|||+.- ..+...|+|...
T Consensus 284 tL~ldeI~~L~~------------~~Q~~Ll~~l~~~~~~~~g~~---~~~~~~~RiI~~t~~~l---~~~~~~~~f~~d 345 (509)
T PRK05022 284 TLFLDEIGELPL------------ALQAKLLRVLQYGEIQRVGSD---RSLRVDVRVIAATNRDL---REEVRAGRFRAD 345 (509)
T ss_pred EEEecChhhCCH------------HHHHHHHHHHhcCCEeeCCCC---cceecceEEEEecCCCH---HHHHHcCCccHH
Confidence 799999999753 244566666654221122221 11134688999998753 245677777652
Q ss_pred ---------ecCCCHHHHHH
Q 020787 200 ---------YWQPNLEDILN 210 (321)
Q Consensus 200 ---------i~~Pd~~~R~~ 210 (321)
|.+|...+|.+
T Consensus 346 L~~rl~~~~i~lPpLreR~e 365 (509)
T PRK05022 346 LYHRLSVFPLSVPPLRERGD 365 (509)
T ss_pred HHhcccccEeeCCCchhchh
Confidence 34687777654
No 187
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.47 E-value=1.9e-06 Score=90.25 Aligned_cols=146 Identities=15% Similarity=0.253 Sum_probs=91.6
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCC-------------------------ceEEeeccccccccCCCcHHHHHHHHHHHH
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGI-------------------------EPVIMSAGELESERAGEPGKLIRERYRTAS 109 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~-------------------------~~i~vs~~eL~s~~~GEser~IR~~F~~A~ 109 (321)
.++||||+|+|||++|+++|+.+.+ +++.+.+++ ..+-..||++-..|.
T Consensus 41 ayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~~~ld~~~------~~~vd~Ir~li~~~~ 114 (614)
T PRK14971 41 AYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNIHELDAAS------NNSVDDIRNLIEQVR 114 (614)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHh
Confidence 6899999999999999999999864 233333221 112456777776664
Q ss_pred hhhhhcCCceEEEeecccccCCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCcccc
Q 020787 110 QVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAP 189 (321)
Q Consensus 110 ~~~~~~gaPcILFIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpA 189 (321)
... .-+.--|++|||+|.... .-...|+..+.+| ...+.+|.+|+.+..|.++
T Consensus 115 ~~P-~~~~~KVvIIdea~~Ls~------------~a~naLLK~LEep--------------p~~tifIL~tt~~~kIl~t 167 (614)
T PRK14971 115 IPP-QIGKYKIYIIDEVHMLSQ------------AAFNAFLKTLEEP--------------PSYAIFILATTEKHKILPT 167 (614)
T ss_pred hCc-ccCCcEEEEEECcccCCH------------HHHHHHHHHHhCC--------------CCCeEEEEEeCCchhchHH
Confidence 321 123345999999887631 1123566666643 2345566666677889988
Q ss_pred CCCCCCCcceec-CCCHHHHHHHHHHHhhcCCC--CHHHHHHhhhCCCC
Q 020787 190 LIRDGRMEKFYW-QPNLEDILNIVHRMYEKDGI--TKDEVGSIVKTFPN 235 (321)
Q Consensus 190 LlRpGRfDr~i~-~Pd~~~R~~Il~~~~~~~~l--~~~dl~~L~d~f~g 235 (321)
|+- |....-+ .++.++-...|+.+.+..++ +.+.+..|+....|
T Consensus 168 I~S--Rc~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s~g 214 (614)
T PRK14971 168 ILS--RCQIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADG 214 (614)
T ss_pred HHh--hhheeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 876 4333222 36777877888877776654 45556666654433
No 188
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.46 E-value=1.9e-06 Score=83.70 Aligned_cols=132 Identities=16% Similarity=0.150 Sum_probs=84.9
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCce-E---------------Eeeccccc--cc-cCC--CcHHHHHHHHHHHHhhhh
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEP-V---------------IMSAGELE--SE-RAG--EPGKLIRERYRTASQVVQ 113 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~-i---------------~vs~~eL~--s~-~~G--Eser~IR~~F~~A~~~~~ 113 (321)
.++++||+|+|||.+|+++|+.+-+.- . .-+-+++. .+ ..+ -+=..||++-+.+....
T Consensus 24 a~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~l~~~~~~~~- 102 (328)
T PRK05707 24 AYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRELVSFVVQTA- 102 (328)
T ss_pred eeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHHHHHHHhhcc-
Confidence 689999999999999999999987731 0 00011221 00 001 12357788776665432
Q ss_pred hcCCceEEEeecccccCCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccccCCCC
Q 020787 114 NQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRD 193 (321)
Q Consensus 114 ~~gaPcILFIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpALlRp 193 (321)
..+..-|++|||.|..-. . -...|+..+.. + ..++.+|.+|++++.|.|.++=
T Consensus 103 ~~~~~kv~iI~~a~~m~~-----------~-aaNaLLK~LEE-------------P-p~~~~fiL~t~~~~~ll~TI~S- 155 (328)
T PRK05707 103 QLGGRKVVLIEPAEAMNR-----------N-AANALLKSLEE-------------P-SGDTVLLLISHQPSRLLPTIKS- 155 (328)
T ss_pred ccCCCeEEEECChhhCCH-----------H-HHHHHHHHHhC-------------C-CCCeEEEEEECChhhCcHHHHh-
Confidence 246677899999998632 1 22345555542 2 3578889999999999988875
Q ss_pred CCCcceec-CCCHHHHHHHHHHH
Q 020787 194 GRMEKFYW-QPNLEDILNIVHRM 215 (321)
Q Consensus 194 GRfDr~i~-~Pd~~~R~~Il~~~ 215 (321)
|.-.+.+ .|+.++-.+.|...
T Consensus 156 -Rc~~~~~~~~~~~~~~~~L~~~ 177 (328)
T PRK05707 156 -RCQQQACPLPSNEESLQWLQQA 177 (328)
T ss_pred -hceeeeCCCcCHHHHHHHHHHh
Confidence 6655444 36777777677544
No 189
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.44 E-value=3e-07 Score=81.22 Aligned_cols=118 Identities=16% Similarity=0.223 Sum_probs=70.2
Q ss_pred HhccccCCCCcHHHHHHHHHHHcC---CceEEeecccccccc-----CCCc-------HHHHHHHHHHHHhhhhhcCCce
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMG---IEPVIMSAGELESER-----AGEP-------GKLIRERYRTASQVVQNQGKMS 119 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g---~~~i~vs~~eL~s~~-----~GEs-------er~IR~~F~~A~~~~~~~gaPc 119 (321)
-++|+|++||||+++|+++-+... .+||.|+++.+-... .|.. .+.-+.+|+.| .=-
T Consensus 24 pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~LFG~~~~~~~~~~~~~~G~l~~A--------~~G 95 (168)
T PF00158_consen 24 PVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESELFGHEKGAFTGARSDKKGLLEQA--------NGG 95 (168)
T ss_dssp -EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHHHEBCSSSSTTTSSEBEHHHHHT--------TTS
T ss_pred CEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhhhccccccccccccccCCceeec--------cce
Confidence 467999999999999999998664 699999998764321 1110 00011344444 345
Q ss_pred EEEeecccccCCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccccCCCCCCCcc
Q 020787 120 CLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEK 198 (321)
Q Consensus 120 ILFIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpALlRpGRfDr 198 (321)
.|||||||.+-+ .++..|+..++.-+...+++ ......+|-||+|||.+ |. .++..|+|..
T Consensus 96 tL~Ld~I~~L~~------------~~Q~~Ll~~l~~~~~~~~g~---~~~~~~~~RiI~st~~~--l~-~~v~~g~fr~ 156 (168)
T PF00158_consen 96 TLFLDEIEDLPP------------ELQAKLLRVLEEGKFTRLGS---DKPVPVDVRIIASTSKD--LE-ELVEQGRFRE 156 (168)
T ss_dssp EEEEETGGGS-H------------HHHHHHHHHHHHSEEECCTS---SSEEE--EEEEEEESS---HH-HHHHTTSS-H
T ss_pred EEeecchhhhHH------------HHHHHHHHHHhhchhccccc---cccccccceEEeecCcC--HH-HHHHcCCChH
Confidence 899999999753 35566777776433222322 11123478899999953 22 3666777765
No 190
>PF05729 NACHT: NACHT domain
Probab=98.39 E-value=3.1e-06 Score=70.14 Aligned_cols=141 Identities=21% Similarity=0.238 Sum_probs=73.8
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCc---------eEEeeccccccc------------cCCCcHHHHHHHHHHHHhhhh
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIE---------PVIMSAGELESE------------RAGEPGKLIRERYRTASQVVQ 113 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~---------~i~vs~~eL~s~------------~~GEser~IR~~F~~A~~~~~ 113 (321)
.|.|+|+||+|||++++.++.++... ++.....++-+. ...+....+.+.+....
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~---- 77 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELL---- 77 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHH----
Confidence 36899999999999999998766432 223444333321 11111222222111111
Q ss_pred hcCCceEEEeecccccCCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccccCCCC
Q 020787 114 NQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRD 193 (321)
Q Consensus 114 ~~gaPcILFIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpALlRp 193 (321)
.+...++|+||-+|........ + ..+.+...|.+++.. ...+++.+|+|++ +..... +.+.
T Consensus 78 ~~~~~~llilDglDE~~~~~~~-~---~~~~~~~~l~~l~~~-------------~~~~~~~liit~r-~~~~~~-~~~~ 138 (166)
T PF05729_consen 78 EKNKRVLLILDGLDELEEQDQS-Q---ERQRLLDLLSQLLPQ-------------ALPPGVKLIITSR-PRAFPD-LRRR 138 (166)
T ss_pred HcCCceEEEEechHhcccchhh-h---HHHHHHHHHHHHhhh-------------ccCCCCeEEEEEc-CChHHH-HHHh
Confidence 1457899999999997753221 0 112233334444431 1134678888764 444422 2221
Q ss_pred CCCcceecC-C-CHHHHHHHHHHHhhc
Q 020787 194 GRMEKFYWQ-P-NLEDILNIVHRMYEK 218 (321)
Q Consensus 194 GRfDr~i~~-P-d~~~R~~Il~~~~~~ 218 (321)
-.-...+.+ | +.+++...++..+++
T Consensus 139 ~~~~~~~~l~~~~~~~~~~~~~~~f~~ 165 (166)
T PF05729_consen 139 LKQAQILELEPFSEEDIKQYLRKYFSN 165 (166)
T ss_pred cCCCcEEEECCCCHHHHHHHHHHHhhc
Confidence 111133444 5 677777777776653
No 191
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.38 E-value=7.9e-07 Score=93.28 Aligned_cols=129 Identities=16% Similarity=0.221 Sum_probs=79.1
Q ss_pred HhccccCCCCcHHHHHHHHHHHc---CCceEEeecccccc-----ccCC--------CcHHHHHHHHHHHHhhhhhcCCc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM---GIEPVIMSAGELES-----ERAG--------EPGKLIRERYRTASQVVQNQGKM 118 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~---g~~~i~vs~~eL~s-----~~~G--------Eser~IR~~F~~A~~~~~~~gaP 118 (321)
-++|+|+||||||++|+++.... +.+|+.++++.+-. .+.| ...+. ...|+.| ..
T Consensus 401 pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~~~~~~lfg~~~~~~~g~~~~~-~g~le~a--------~~ 471 (686)
T PRK15429 401 TVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQR-IGRFELA--------DK 471 (686)
T ss_pred CEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChhHhhhhhcCcccccccccccch-hhHHHhc--------CC
Confidence 68999999999999999998754 56999999876532 2222 11111 1234333 35
Q ss_pred eEEEeecccccCCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccccCCCCCCCcc
Q 020787 119 SCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEK 198 (321)
Q Consensus 119 cILFIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpALlRpGRfDr 198 (321)
-.|||||||..-. .++..|+..+++-....+++. .....+|-||+|||+.- ..+...|+|..
T Consensus 472 GtL~Ldei~~L~~------------~~Q~~L~~~l~~~~~~~~g~~---~~~~~~~RiI~~t~~~l---~~~~~~~~f~~ 533 (686)
T PRK15429 472 SSLFLDEVGDMPL------------ELQPKLLRVLQEQEFERLGSN---KIIQTDVRLIAATNRDL---KKMVADREFRS 533 (686)
T ss_pred CeEEEechhhCCH------------HHHHHHHHHHHhCCEEeCCCC---CcccceEEEEEeCCCCH---HHHHHcCcccH
Confidence 7899999999642 344566666653221112220 11134678999998652 24555666665
Q ss_pred ---------eecCCCHHHHHH
Q 020787 199 ---------FYWQPNLEDILN 210 (321)
Q Consensus 199 ---------~i~~Pd~~~R~~ 210 (321)
.|.+|...+|.+
T Consensus 534 ~L~~~l~~~~i~lPpLreR~~ 554 (686)
T PRK15429 534 DLYYRLNVFPIHLPPLRERPE 554 (686)
T ss_pred HHHhccCeeEEeCCChhhhHh
Confidence 234687777654
No 192
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.37 E-value=1.9e-06 Score=88.14 Aligned_cols=151 Identities=14% Similarity=0.228 Sum_probs=85.3
Q ss_pred HhccccCCCCcHHHHHHHHHHHc---CCceEEeecccccccc-----CCCcH-------HHHHHHHHHHHhhhhhcCCce
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM---GIEPVIMSAGELESER-----AGEPG-------KLIRERYRTASQVVQNQGKMS 119 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~---g~~~i~vs~~eL~s~~-----~GEse-------r~IR~~F~~A~~~~~~~gaPc 119 (321)
-++|+|++||||+++|+++-... +.+|+.++++.+-+.+ .|... ..-...|+.| ..-
T Consensus 229 pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~~~~e~elFG~~~~~~~~~~~~~~g~~e~a--------~~G 300 (520)
T PRK10820 229 PLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPDDVVESELFGHAPGAYPNALEGKKGFFEQA--------NGG 300 (520)
T ss_pred CEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCHHHHHHHhcCCCCCCcCCcccCCCChhhhc--------CCC
Confidence 57899999999999999986554 3589999998764321 11100 0001123333 356
Q ss_pred EEEeecccccCCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccccCCCCCCCcc-
Q 020787 120 CLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEK- 198 (321)
Q Consensus 120 ILFIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpALlRpGRfDr- 198 (321)
.|||||||..-+ .++..|++.+.+-+.-.+++ ......+|-||+||+++- ..|...|+|..
T Consensus 301 tL~LdeI~~L~~------------~~Q~~Ll~~l~~~~~~~~g~---~~~~~~~vRiI~st~~~l---~~l~~~g~f~~d 362 (520)
T PRK10820 301 SVLLDEIGEMSP------------RMQAKLLRFLNDGTFRRVGE---DHEVHVDVRVICATQKNL---VELVQKGEFRED 362 (520)
T ss_pred EEEEeChhhCCH------------HHHHHHHHHHhcCCcccCCC---CcceeeeeEEEEecCCCH---HHHHHcCCccHH
Confidence 789999999743 24456666665322111211 011123678899887652 13455565554
Q ss_pred --------eecCCCHHHHH-HHH-------HHHhhcC-----CCCHHHHHHhhh
Q 020787 199 --------FYWQPNLEDIL-NIV-------HRMYEKD-----GITKDEVGSIVK 231 (321)
Q Consensus 199 --------~i~~Pd~~~R~-~Il-------~~~~~~~-----~l~~~dl~~L~d 231 (321)
.+.+|...+|. +|. +.+.... .++.+-+..|..
T Consensus 363 L~~rL~~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls~~a~~~L~~ 416 (520)
T PRK10820 363 LYYRLNVLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTR 416 (520)
T ss_pred HHhhcCeeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHhc
Confidence 23357776665 443 2222111 356666666654
No 193
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=98.36 E-value=3.3e-07 Score=89.60 Aligned_cols=82 Identities=17% Similarity=0.137 Sum_probs=51.3
Q ss_pred ceEEEeecccccCCCCCCCccchhhHHHHHHHHhhcCCC-CccccCccccccCCCCCccEEEeeCCCC-CccccCCCCCC
Q 020787 118 MSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNP-TRVSIGQDWRESDITNRIPIIFTGNDFS-TIYAPLIRDGR 195 (321)
Q Consensus 118 PcILFIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~-~~vql~g~~~~~~~~~~V~VIaaTNrp~-~LDpALlRpGR 195 (321)
.-+||||||+..-+ .+++.|++.|+.- ..++-+|.... ...++.+|+|+|-.+ .|.++|+. |
T Consensus 132 ~GvL~lDEi~~L~~------------~~Q~~Ll~~l~~g~~~v~r~G~~~~--~~~r~iviat~np~eg~l~~~Lld--R 195 (337)
T TIGR02030 132 RGILYIDEVNLLED------------HLVDVLLDVAASGWNVVEREGISIR--HPARFVLVGSGNPEEGELRPQLLD--R 195 (337)
T ss_pred CCEEEecChHhCCH------------HHHHHHHHHHHhCCeEEEECCEEEE--cCCCEEEEeccccccCCCCHHHHh--h
Confidence 46899999998632 3555677777532 12333442211 123666777777444 57777777 7
Q ss_pred CcceecC--CC-HHHHHHHHHHH
Q 020787 196 MEKFYWQ--PN-LEDILNIVHRM 215 (321)
Q Consensus 196 fDr~i~~--Pd-~~~R~~Il~~~ 215 (321)
|.-.+.+ |. .++|.+|++..
T Consensus 196 f~l~i~l~~p~~~eer~eIL~~~ 218 (337)
T TIGR02030 196 FGLHAEIRTVRDVELRVEIVERR 218 (337)
T ss_pred cceEEECCCCCCHHHHHHHHHhh
Confidence 8766654 44 48899999764
No 194
>PRK15115 response regulator GlrR; Provisional
Probab=98.34 E-value=1.3e-06 Score=85.60 Aligned_cols=132 Identities=18% Similarity=0.230 Sum_probs=80.2
Q ss_pred HhccccCCCCcHHHHHHHHHHHc---CCceEEeeccccccccCCCcHHHHHHHHHHHHhh----------hhhcCCceEE
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM---GIEPVIMSAGELESERAGEPGKLIRERYRTASQV----------VQNQGKMSCL 121 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~---g~~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~----------~~~~gaPcIL 121 (321)
.++|+|++|||||++|+++.... +.+|+.++++.+-..+ .-.++|-.+... .-.+...-.|
T Consensus 159 ~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~------~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl 232 (444)
T PRK15115 159 SVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQL------LESELFGHARGAFTGAVSNREGLFQAAEGGTL 232 (444)
T ss_pred eEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHH------HHHHhcCCCcCCCCCCccCCCCcEEECCCCEE
Confidence 57899999999999999998775 4799999998774321 112233221100 0001234689
Q ss_pred EeecccccCCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccccCCCCCCCcc---
Q 020787 122 MINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEK--- 198 (321)
Q Consensus 122 FIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpALlRpGRfDr--- 198 (321)
||||||.+.+ .++..|+..+++-....+++. .....++-||+|||+. +. .++..|+|..
T Consensus 233 ~l~~i~~l~~------------~~q~~L~~~l~~~~~~~~g~~---~~~~~~~rii~~~~~~--l~-~~~~~~~f~~~l~ 294 (444)
T PRK15115 233 FLDEIGDMPA------------PLQVKLLRVLQERKVRPLGSN---RDIDIDVRIISATHRD--LP-KAMARGEFREDLY 294 (444)
T ss_pred EEEccccCCH------------HHHHHHHHHHhhCCEEeCCCC---ceeeeeEEEEEeCCCC--HH-HHHHcCCccHHHH
Confidence 9999999753 234456666653222122221 1112368899999863 43 4667789854
Q ss_pred ------eecCCCHHHHHH
Q 020787 199 ------FYWQPNLEDILN 210 (321)
Q Consensus 199 ------~i~~Pd~~~R~~ 210 (321)
.|.+|...+|.+
T Consensus 295 ~~l~~~~i~lPpLr~R~e 312 (444)
T PRK15115 295 YRLNVVSLKIPALAERTE 312 (444)
T ss_pred HhhceeeecCCChHhccc
Confidence 233587777753
No 195
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.33 E-value=4e-06 Score=82.34 Aligned_cols=131 Identities=14% Similarity=0.162 Sum_probs=81.5
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceE-E--eec--------------ccc--cccc-----C---------------C
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPV-I--MSA--------------GEL--ESER-----A---------------G 95 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i-~--vs~--------------~eL--~s~~-----~---------------G 95 (321)
.++|+||+||||+.+|+++|+.+.+.-- . -.. +++ +.+- . |
T Consensus 23 a~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~~~~~ 102 (342)
T PRK06964 23 ALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADADEGG 102 (342)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchhhccc
Confidence 6789999999999999999999877431 0 000 111 0000 0 1
Q ss_pred C---------cHHHHHHHHHHHHhhhhhcCCceEEEeecccccCCCCCCCccchhhHHHHHHHHhhcCCCCccccCcccc
Q 020787 96 E---------PGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWR 166 (321)
Q Consensus 96 E---------ser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~ 166 (321)
. +=..||++-+.+.... ..+.--|++||+.|..-. . -...||..+..|
T Consensus 103 ~k~~~~~~~I~idqiR~l~~~~~~~~-~~~~~kV~iI~~ae~m~~-----------~-AaNaLLKtLEEP---------- 159 (342)
T PRK06964 103 KKTKAPSKEIKIEQVRALLDFCGVGT-HRGGARVVVLYPAEALNV-----------A-AANALLKTLEEP---------- 159 (342)
T ss_pred ccccccccccCHHHHHHHHHHhccCC-ccCCceEEEEechhhcCH-----------H-HHHHHHHHhcCC----------
Confidence 0 1135666655543221 134456788888877531 1 223456555533
Q ss_pred ccCCCCCccEEEeeCCCCCccccCCCCCCCcceec-CCCHHHHHHHHHH
Q 020787 167 ESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYW-QPNLEDILNIVHR 214 (321)
Q Consensus 167 ~~~~~~~V~VIaaTNrp~~LDpALlRpGRfDr~i~-~Pd~~~R~~Il~~ 214 (321)
.+++.+|.+|++|+.|.|.++. |.=.+.+ .|+.++..+.|..
T Consensus 160 ----p~~t~fiL~t~~~~~LLpTI~S--Rcq~i~~~~~~~~~~~~~L~~ 202 (342)
T PRK06964 160 ----PPGTVFLLVSARIDRLLPTILS--RCRQFPMTVPAPEAAAAWLAA 202 (342)
T ss_pred ----CcCcEEEEEECChhhCcHHHHh--cCEEEEecCCCHHHHHHHHHH
Confidence 4688899999999999999887 7643333 4788888888764
No 196
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=98.33 E-value=7.1e-07 Score=87.93 Aligned_cols=82 Identities=15% Similarity=0.106 Sum_probs=48.6
Q ss_pred ceEEEeecccccCCCCCCCccchhhHHHHHHHHhhcCCC-CccccCccccccCCCCCccEEEeeCCCC-CccccCCCCCC
Q 020787 118 MSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNP-TRVSIGQDWRESDITNRIPIIFTGNDFS-TIYAPLIRDGR 195 (321)
Q Consensus 118 PcILFIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~-~~vql~g~~~~~~~~~~V~VIaaTNrp~-~LDpALlRpGR 195 (321)
--+||||||+..-+ .++..|++.|+.- ..++-+|. ......++.+|+|.|-.+ .+.++|+. |
T Consensus 145 ~GiL~lDEInrL~~------------~~Q~~LLeam~e~~~~ier~G~--s~~~p~rfiviaT~np~eg~l~~~Lld--R 208 (350)
T CHL00081 145 RGILYVDEVNLLDD------------HLVDILLDSAASGWNTVEREGI--SIRHPARFVLVGSGNPEEGELRPQLLD--R 208 (350)
T ss_pred CCEEEecChHhCCH------------HHHHHHHHHHHhCCeEEeeCCe--eeecCCCEEEEeccCcccCCCCHHHHH--H
Confidence 46899999998753 2445577776521 11221231 111123566666677444 46666666 7
Q ss_pred CcceecC--CC-HHHHHHHHHHH
Q 020787 196 MEKFYWQ--PN-LEDILNIVHRM 215 (321)
Q Consensus 196 fDr~i~~--Pd-~~~R~~Il~~~ 215 (321)
|.-.+.+ |+ .+.|.+|++..
T Consensus 209 f~l~i~l~~~~~~~~e~~il~~~ 231 (350)
T CHL00081 209 FGMHAEIRTVKDPELRVKIVEQR 231 (350)
T ss_pred hCceeecCCCCChHHHHHHHHhh
Confidence 7765554 65 69999999764
No 197
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=98.29 E-value=4.5e-07 Score=90.36 Aligned_cols=54 Identities=24% Similarity=0.346 Sum_probs=44.1
Q ss_pred HhccccCCCCcHHHHHHHHHHHcC--CceEEeeccccccccCCCcHHHHHHHHHHHH
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMG--IEPVIMSAGELESERAGEPGKLIRERYRTAS 109 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g--~~~i~vs~~eL~s~~~GEser~IR~~F~~A~ 109 (321)
.++|-||||||||-||-++|+++| +||+.++|+|++|.-+-..| .+-+.||+|.
T Consensus 52 ~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiyS~e~kKTE-~L~qa~RraI 107 (398)
T PF06068_consen 52 AILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIYSSEVKKTE-ALTQAFRRAI 107 (398)
T ss_dssp EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-BTTC-HHH-HHHHHHHCSE
T ss_pred EEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceeeecccCchH-HHHHHHHHhh
Confidence 788999999999999999999998 89999999999998777777 4556887763
No 198
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.29 E-value=5.9e-06 Score=79.80 Aligned_cols=125 Identities=13% Similarity=0.168 Sum_probs=78.0
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCc------------------------eEEeeccccccccCCCcHHHHHHHHHHHHh
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIE------------------------PVIMSAGELESERAGEPGKLIRERYRTASQ 110 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~------------------------~i~vs~~eL~s~~~GEser~IR~~F~~A~~ 110 (321)
.++||||+|+|||.+|+++|+.+-+. +..+... .+.+ +=..||++-+.+..
T Consensus 30 a~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i~~~---~~~i--~id~ir~l~~~~~~ 104 (329)
T PRK08058 30 AYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLVAPD---GQSI--KKDQIRYLKEEFSK 104 (329)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEeccc---cccC--CHHHHHHHHHHHhh
Confidence 67999999999999999999987542 2222110 1111 12356666555432
Q ss_pred hhhhcCCceEEEeecccccCCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccccC
Q 020787 111 VVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPL 190 (321)
Q Consensus 111 ~~~~~gaPcILFIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpAL 190 (321)
.. ..+..-|++|||+|..-. .-...|+..+..| .+++.+|.+|+.++.|.|++
T Consensus 105 ~~-~~~~~kvviI~~a~~~~~------------~a~NaLLK~LEEP--------------p~~~~~Il~t~~~~~ll~TI 157 (329)
T PRK08058 105 SG-VESNKKVYIIEHADKMTA------------SAANSLLKFLEEP--------------SGGTTAILLTENKHQILPTI 157 (329)
T ss_pred CC-cccCceEEEeehHhhhCH------------HHHHHHHHHhcCC--------------CCCceEEEEeCChHhCcHHH
Confidence 21 134567999999987631 1223566666643 34677777888899999997
Q ss_pred CCCCCCcceec-CCCHHHHHHHHH
Q 020787 191 IRDGRMEKFYW-QPNLEDILNIVH 213 (321)
Q Consensus 191 lRpGRfDr~i~-~Pd~~~R~~Il~ 213 (321)
+= |.-...+ .|+.++-.++|+
T Consensus 158 rS--Rc~~i~~~~~~~~~~~~~L~ 179 (329)
T PRK08058 158 LS--RCQVVEFRPLPPESLIQRLQ 179 (329)
T ss_pred Hh--hceeeeCCCCCHHHHHHHHH
Confidence 66 5444333 366666655554
No 199
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=98.25 E-value=8.1e-07 Score=91.82 Aligned_cols=130 Identities=15% Similarity=0.192 Sum_probs=79.8
Q ss_pred HhccccCCCCcHHHHHHHHHHH-----------cCCceEEeecccccccc-----CCCcHH--------HHHHHHHHHHh
Q 020787 55 SLCIWGGKGQGKSFQTELIFQA-----------MGIEPVIMSAGELESER-----AGEPGK--------LIRERYRTASQ 110 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e-----------~g~~~i~vs~~eL~s~~-----~GEser--------~IR~~F~~A~~ 110 (321)
-++|+|++||||+++|+++-.. .+.+|+.++++.+-..+ .|..+- .-..+|+.|
T Consensus 244 pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~inCaal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A-- 321 (538)
T PRK15424 244 AVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIA-- 321 (538)
T ss_pred cEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEeecccCChhhHHHHhcCCccccccCccccccCCchhcc--
Confidence 6899999999999999999876 56799999998764221 111000 000123322
Q ss_pred hhhhcCCceEEEeecccccCCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccccC
Q 020787 111 VVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPL 190 (321)
Q Consensus 111 ~~~~~gaPcILFIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpAL 190 (321)
.--.|||||||.+-. .++..|+..+.+-....+++. .....+|-||+|||+.-. .+
T Consensus 322 ------~gGTLfLdeI~~Lp~------------~~Q~kLl~~L~e~~~~r~G~~---~~~~~dvRiIaat~~~L~---~~ 377 (538)
T PRK15424 322 ------HGGTLFLDEIGEMPL------------PLQTRLLRVLEEKEVTRVGGH---QPVPVDVRVISATHCDLE---ED 377 (538)
T ss_pred ------CCCEEEEcChHhCCH------------HHHHHHHhhhhcCeEEecCCC---ceeccceEEEEecCCCHH---HH
Confidence 235799999999642 345567777764322223321 111236789999986522 56
Q ss_pred CCCCCCcce---------ecCCCHHHHHH
Q 020787 191 IRDGRMEKF---------YWQPNLEDILN 210 (321)
Q Consensus 191 lRpGRfDr~---------i~~Pd~~~R~~ 210 (321)
...|+|..- +.+|...+|.+
T Consensus 378 v~~g~Fr~dL~yrL~~~~I~lPPLReR~e 406 (538)
T PRK15424 378 VRQGRFRRDLFYRLSILRLQLPPLRERVA 406 (538)
T ss_pred HhcccchHHHHHHhcCCeecCCChhhchh
Confidence 677888752 23577666653
No 200
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.20 E-value=2e-06 Score=80.74 Aligned_cols=66 Identities=24% Similarity=0.439 Sum_probs=48.2
Q ss_pred HhccccCCCCcHHHHHHHHHHHc---CCceEEeeccccccccCCCcHHHHHHHHHH---HHhhhhhcCCceEEEeecccc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM---GIEPVIMSAGELESERAGEPGKLIRERYRT---ASQVVQNQGKMSCLMINDIDA 128 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~---g~~~i~vs~~eL~s~~~GEser~IR~~F~~---A~~~~~~~gaPcILFIDEIDA 128 (321)
.|.|+||||+|||+||-|+++++ |..++-++.+|+++. |.+.|.. ..+..+.-.+..+|+||||=+
T Consensus 107 nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~--------Lk~~~~~~~~~~~l~~~l~~~dlLIiDDlG~ 178 (254)
T COG1484 107 NLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSK--------LKAAFDEGRLEEKLLRELKKVDLLIIDDIGY 178 (254)
T ss_pred cEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHH--------HHHHHhcCchHHHHHHHhhcCCEEEEecccC
Confidence 68999999999999999998776 889999999999964 3333332 000111012678999999855
No 201
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.20 E-value=1.4e-06 Score=85.50 Aligned_cols=131 Identities=18% Similarity=0.233 Sum_probs=78.4
Q ss_pred HhccccCCCCcHHHHHHHHHHH---cCCceEEeeccccccccCCCcHHHHHHHHHHHHh-----------hhhhcCCceE
Q 020787 55 SLCIWGGKGQGKSFQTELIFQA---MGIEPVIMSAGELESERAGEPGKLIRERYRTASQ-----------VVQNQGKMSC 120 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e---~g~~~i~vs~~eL~s~~~GEser~IR~~F~~A~~-----------~~~~~gaPcI 120 (321)
-++|+|++||||+++|+++... .+.+|+.+++..+-..+ .-.++|-.... ... +...-+
T Consensus 168 ~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~------~~~~lfg~~~~~~~~~~~~~~g~~~-~a~~gt 240 (457)
T PRK11361 168 SVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESL------LESELFGHEKGAFTGAQTLRQGLFE-RANEGT 240 (457)
T ss_pred EEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHH------HHHHhcCCCCCCCCCCCCCCCCceE-ECCCCE
Confidence 4789999999999999999766 44689999998774321 11122211000 000 112457
Q ss_pred EEeecccccCCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccccCCCCCCCccee
Q 020787 121 LMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFY 200 (321)
Q Consensus 121 LFIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpALlRpGRfDr~i 200 (321)
|||||||.+.+ .++..|+..+++-....+++ ......++.||+|||+.- ..|.+.|+|...+
T Consensus 241 l~ld~i~~l~~------------~~q~~L~~~l~~~~~~~~~~---~~~~~~~~rii~~t~~~l---~~~~~~g~~~~~l 302 (457)
T PRK11361 241 LLLDEIGEMPL------------VLQAKLLRILQEREFERIGG---HQTIKVDIRIIAATNRDL---QAMVKEGTFREDL 302 (457)
T ss_pred EEEechhhCCH------------HHHHHHHHHHhcCcEEeCCC---CceeeeceEEEEeCCCCH---HHHHHcCCchHHH
Confidence 99999999753 23456777766432212222 111123678999998632 2577888887622
Q ss_pred ---------cCCCHHHHHH
Q 020787 201 ---------WQPNLEDILN 210 (321)
Q Consensus 201 ---------~~Pd~~~R~~ 210 (321)
.+|...+|.+
T Consensus 303 ~~~l~~~~i~~ppLreR~~ 321 (457)
T PRK11361 303 FYRLNVIHLILPPLRDRRE 321 (457)
T ss_pred HHHhccceecCCChhhchh
Confidence 3576666643
No 202
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=98.19 E-value=3.4e-06 Score=86.99 Aligned_cols=130 Identities=15% Similarity=0.202 Sum_probs=77.8
Q ss_pred HhccccCCCCcHHHHHHHHHHH---cCCceEEeeccccccc-----cCCCcH--------HHHHHHHHHHHhhhhhcCCc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQA---MGIEPVIMSAGELESE-----RAGEPG--------KLIRERYRTASQVVQNQGKM 118 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e---~g~~~i~vs~~eL~s~-----~~GEse--------r~IR~~F~~A~~~~~~~gaP 118 (321)
-++|+|++||||+++|+++-.. .+.+|+.++++.+-.. ..|..+ .--..+|+.| .-
T Consensus 237 pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~lleseLFG~~~gaftga~~~~~~Gl~e~A--------~g 308 (526)
T TIGR02329 237 TVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAESLLEAELFGYEEGAFTGARRGGRTGLIEAA--------HR 308 (526)
T ss_pred cEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChhHHHHHhcCCcccccccccccccccchhhc--------CC
Confidence 6889999999999999999865 4569999999876421 111100 0001123322 24
Q ss_pred eEEEeecccccCCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccccCCCCCCCcc
Q 020787 119 SCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEK 198 (321)
Q Consensus 119 cILFIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpALlRpGRfDr 198 (321)
-.|||||||.+-. .++..|+..+.+-....+++. .....+|-||+|||+.- ..+...|+|.+
T Consensus 309 GTLfLdeI~~Lp~------------~~Q~~Ll~~L~~~~~~r~g~~---~~~~~dvRiIaat~~~l---~~~v~~g~fr~ 370 (526)
T TIGR02329 309 GTLFLDEIGEMPL------------PLQTRLLRVLEEREVVRVGGT---EPVPVDVRVVAATHCAL---TTAVQQGRFRR 370 (526)
T ss_pred ceEEecChHhCCH------------HHHHHHHHHHhcCcEEecCCC---ceeeecceEEeccCCCH---HHHhhhcchhH
Confidence 5799999999642 344566666654322223321 11123578899998653 23456666664
Q ss_pred ---------eecCCCHHHHHH
Q 020787 199 ---------FYWQPNLEDILN 210 (321)
Q Consensus 199 ---------~i~~Pd~~~R~~ 210 (321)
.+.+|...+|.+
T Consensus 371 dL~~rL~~~~I~lPPLReR~e 391 (526)
T TIGR02329 371 DLFYRLSILRIALPPLRERPG 391 (526)
T ss_pred HHHHhcCCcEEeCCCchhchh
Confidence 234677666653
No 203
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.18 E-value=3.5e-07 Score=86.57 Aligned_cols=142 Identities=15% Similarity=0.198 Sum_probs=72.6
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCce-E--EeeccccccccCCCcHHHHHHHHHHHHhhh------hhcCCceEEEeec
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEP-V--IMSAGELESERAGEPGKLIRERYRTASQVV------QNQGKMSCLMIND 125 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~-i--~vs~~eL~s~~~GEser~IR~~F~~A~~~~------~~~gaPcILFIDE 125 (321)
-++|.||+|||||++++..-.++.-.- + .+.-+-. -+...+.+..+...+.. ...++-+|+||||
T Consensus 35 pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~------Tts~~~q~~ie~~l~k~~~~~~gP~~~k~lv~fiDD 108 (272)
T PF12775_consen 35 PVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQ------TTSNQLQKIIESKLEKRRGRVYGPPGGKKLVLFIDD 108 (272)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TT------HHHHHHHHCCCTTECECTTEEEEEESSSEEEEEEET
T ss_pred cEEEECCCCCchhHHHHhhhccCCccccceeEeeccCC------CCHHHHHHHHhhcEEcCCCCCCCCCCCcEEEEEecc
Confidence 468999999999999998887765322 1 2222110 12233332222111110 0135789999999
Q ss_pred ccccCCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccC----CCCCccEEEeeCCCC---CccccCCCCCCCcc
Q 020787 126 IDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESD----ITNRIPIIFTGNDFS---TIYAPLIRDGRMEK 198 (321)
Q Consensus 126 IDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~----~~~~V~VIaaTNrp~---~LDpALlRpGRfDr 198 (321)
|.--.+..-+++ .+...|-.++|. +|-|+..+ ...++-+|+|.|.+. .|.+-|+| .|-
T Consensus 109 lN~p~~d~ygtq------~~iElLRQ~i~~------~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r--~f~- 173 (272)
T PF12775_consen 109 LNMPQPDKYGTQ------PPIELLRQLIDY------GGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLR--HFN- 173 (272)
T ss_dssp TT-S---TTS--------HHHHHHHHHHHC------SEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHT--TEE-
T ss_pred cCCCCCCCCCCc------CHHHHHHHHHHh------cCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhh--heE-
Confidence 987554322333 344555555552 23333221 134788888877321 24444444 221
Q ss_pred eecC--CCHHHHHHHHHHHhh
Q 020787 199 FYWQ--PNLEDILNIVHRMYE 217 (321)
Q Consensus 199 ~i~~--Pd~~~R~~Il~~~~~ 217 (321)
.+++ |+.+.-..|+..++.
T Consensus 174 i~~~~~p~~~sl~~If~~il~ 194 (272)
T PF12775_consen 174 ILNIPYPSDESLNTIFSSILQ 194 (272)
T ss_dssp EEE----TCCHHHHHHHHHHH
T ss_pred EEEecCCChHHHHHHHHHHHh
Confidence 1233 888888888876654
No 204
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.16 E-value=5e-06 Score=82.33 Aligned_cols=131 Identities=14% Similarity=0.198 Sum_probs=77.7
Q ss_pred HhccccCCCCcHHHHHHHHHHHcC---CceEEeeccccccccCCCcHHHHHHHHHHHHhh-----------hhhcCCceE
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMG---IEPVIMSAGELESERAGEPGKLIRERYRTASQV-----------VQNQGKMSC 120 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g---~~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~-----------~~~~gaPcI 120 (321)
-++|+|++|||||++|+++..... .+|+.++++.+-+ +..-.++|-..... .. ....-.
T Consensus 163 ~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~------~~~~~~lfg~~~g~~~~~~~~~~g~~~-~a~~Gt 235 (469)
T PRK10923 163 SVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPK------DLIESELFGHEKGAFTGANTIRQGRFE-QADGGT 235 (469)
T ss_pred eEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCH------HHHHHHhcCCCCCCCCCCCcCCCCCee-ECCCCE
Confidence 588999999999999999988764 6999999988732 22223333211000 00 112457
Q ss_pred EEeecccccCCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccccCCCCCCCcc--
Q 020787 121 LMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEK-- 198 (321)
Q Consensus 121 LFIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpALlRpGRfDr-- 198 (321)
|||||||.+.. .++..|+..+++-....+++ +.. ...++-||+|||..- ..+...|+|..
T Consensus 236 l~l~~i~~l~~------------~~q~~L~~~l~~~~~~~~~~-~~~--~~~~~rii~~~~~~l---~~~~~~~~~~~~L 297 (469)
T PRK10923 236 LFLDEIGDMPL------------DVQTRLLRVLADGQFYRVGG-YAP--VKVDVRIIAATHQNL---EQRVQEGKFREDL 297 (469)
T ss_pred EEEeccccCCH------------HHHHHHHHHHhcCcEEeCCC-CCe--EEeeEEEEEeCCCCH---HHHHHcCCchHHH
Confidence 89999999753 24456666666432222222 211 123678999987632 13444555532
Q ss_pred -------eecCCCHHHHHH
Q 020787 199 -------FYWQPNLEDILN 210 (321)
Q Consensus 199 -------~i~~Pd~~~R~~ 210 (321)
.|.+|...+|.+
T Consensus 298 ~~~l~~~~i~~PpLreR~~ 316 (469)
T PRK10923 298 FHRLNVIRVHLPPLRERRE 316 (469)
T ss_pred HHHhcceeecCCCcccchh
Confidence 345676666654
No 205
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.16 E-value=7.5e-06 Score=79.87 Aligned_cols=132 Identities=16% Similarity=0.213 Sum_probs=77.7
Q ss_pred HhccccCCCCcHHHHHHHHHHHc---CCceEEeeccccccccCCCcHHHHHHHHHHHHhhh-----h-----hcCCceEE
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM---GIEPVIMSAGELESERAGEPGKLIRERYRTASQVV-----Q-----NQGKMSCL 121 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~---g~~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~-----~-----~~gaPcIL 121 (321)
-+.|+|.+||||+++|+++.... +.+|+.++++.+...+ +-.++|-...... + .......|
T Consensus 164 ~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~------~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl 237 (441)
T PRK10365 164 TVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESL------LESELFGHEKGAFTGADKRREGRFVEADGGTL 237 (441)
T ss_pred eEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHH------HHHHhcCCCCCCcCCCCcCCCCceeECCCCEE
Confidence 56789999999999999997554 5799999998764321 1112232111000 0 01247889
Q ss_pred EeecccccCCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccccCCCCCCCcc---
Q 020787 122 MINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEK--- 198 (321)
Q Consensus 122 FIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpALlRpGRfDr--- 198 (321)
||||||.+.+ .++..|+..+..-....+++ ......++-||+||+++- ..++.+|+|.+
T Consensus 238 ~ldei~~l~~------------~~q~~l~~~l~~~~~~~~~~---~~~~~~~~rii~~t~~~~---~~~~~~~~~~~~l~ 299 (441)
T PRK10365 238 FLDEIGDISP------------MMQVRLLRAIQEREVQRVGS---NQTISVDVRLIAATHRDL---AAEVNAGRFRQDLY 299 (441)
T ss_pred EEeccccCCH------------HHHHHHHHHHccCcEEeCCC---CceeeeceEEEEeCCCCH---HHHHHcCCchHHHH
Confidence 9999999753 13345566655322111111 011122567888887743 35678888865
Q ss_pred ------eecCCCHHHHHH
Q 020787 199 ------FYWQPNLEDILN 210 (321)
Q Consensus 199 ------~i~~Pd~~~R~~ 210 (321)
.+.+|...+|.+
T Consensus 300 ~~l~~~~i~~ppLreR~~ 317 (441)
T PRK10365 300 YRLNVVAIEVPSLRQRRE 317 (441)
T ss_pred HHhccceecCCChhhcch
Confidence 233576666644
No 206
>PF13173 AAA_14: AAA domain
Probab=98.16 E-value=1.8e-06 Score=71.67 Aligned_cols=109 Identities=19% Similarity=0.240 Sum_probs=65.0
Q ss_pred HhccccCCCCcHHHHHHHHHHHcC--CceEEeeccccccccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeecccccCCC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMG--IEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGR 132 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g--~~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~~r 132 (321)
++.|+||.|||||++++.+++++. -+++.++..+......-+.+ +-+.|.+- . ...+++||||||...-.
T Consensus 4 ~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~--~~~~~~~~---~--~~~~~~i~iDEiq~~~~- 75 (128)
T PF13173_consen 4 IIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD--LLEYFLEL---I--KPGKKYIFIDEIQYLPD- 75 (128)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh--hHHHHHHh---h--ccCCcEEEEehhhhhcc-
Confidence 578999999999999999999987 66666666554431111111 12222221 1 22689999999988621
Q ss_pred CCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccc--cCCCCCCCcc
Q 020787 133 FGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYA--PLIRDGRMEK 198 (321)
Q Consensus 133 ~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDp--ALlRpGRfDr 198 (321)
....+-.+.|+ ..++.||+|+.....+.. +-.=.||...
T Consensus 76 ------------~~~~lk~l~d~---------------~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~ 116 (128)
T PF13173_consen 76 ------------WEDALKFLVDN---------------GPNIKIILTGSSSSLLSKDIAESLAGRVIE 116 (128)
T ss_pred ------------HHHHHHHHHHh---------------ccCceEEEEccchHHHhhcccccCCCeEEE
Confidence 11122223331 236889998877666633 2233467664
No 207
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.16 E-value=1.8e-06 Score=86.11 Aligned_cols=54 Identities=26% Similarity=0.297 Sum_probs=48.9
Q ss_pred HhccccCCCCcHHHHHHHHHHHcC--CceEEeeccccccccCCCcHHHHHHHHHHHH
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMG--IEPVIMSAGELESERAGEPGKLIRERYRTAS 109 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g--~~~i~vs~~eL~s~~~GEser~IR~~F~~A~ 109 (321)
.+++.||||||||-||-++|.++| ++|+.+||+|++|--+..+|.+ -+.||+|.
T Consensus 67 giLi~GppgTGKTAlA~gIa~eLG~dvPF~~isgsEiYS~E~kKTE~L-~qa~RraI 122 (450)
T COG1224 67 GILIVGPPGTGKTALAMGIARELGEDVPFVAISGSEIYSLEVKKTEAL-TQALRRAI 122 (450)
T ss_pred EEEEECCCCCcHHHHHHHHHHHhCCCCCceeeccceeeeecccHHHHH-HHHHHHhh
Confidence 688999999999999999999998 7999999999999988888865 46888875
No 208
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.15 E-value=2.1e-06 Score=85.15 Aligned_cols=54 Identities=17% Similarity=0.140 Sum_probs=47.2
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCC-------ceEEeec----cccccccCCCcHHHHHHHHHHH
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGI-------EPVIMSA----GELESERAGEPGKLIRERYRTA 108 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~-------~~i~vs~----~eL~s~~~GEser~IR~~F~~A 108 (321)
||+|+||||||||++|+++|+.++. ++..+++ +.+...-+|=-.+.+|+.|.+.
T Consensus 80 il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~~~~~sp~~e~Pl~l~p~~~r~~~~~~ 144 (361)
T smart00763 80 ILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWNGEESPMHEDPLHLFPDELREDLEDE 144 (361)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEecCCCCCCccCCcccCCHHHHHHHHHH
Confidence 8999999999999999999999998 8999999 6666666666788888888665
No 209
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=2.7e-06 Score=91.24 Aligned_cols=107 Identities=19% Similarity=0.203 Sum_probs=73.3
Q ss_pred HhccccCCCCcHHHHHHHHHHHcC---CceEEeeccccccc------------cCCCcHHHHHHHHHHHHhhhhhcCCce
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMG---IEPVIMSAGELESE------------RAGEPGKLIRERYRTASQVVQNQGKMS 119 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g---~~~i~vs~~eL~s~------------~~GEser~IR~~F~~A~~~~~~~gaPc 119 (321)
..++-||.|+|||-+|+++|..+. -++|+++.||...+ |+|=-|- -...+|.. +.-.|
T Consensus 523 sFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSrLIGaPPGYVGyeeG---G~LTEaVR----r~PyS 595 (786)
T COG0542 523 SFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVSRLIGAPPGYVGYEEG---GQLTEAVR----RKPYS 595 (786)
T ss_pred EEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHHHHHhCCCCCCceeccc---cchhHhhh----cCCCe
Confidence 667899999999999999999998 89999999987643 4443221 12334432 23468
Q ss_pred EEEeecccccCCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCC
Q 020787 120 CLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDF 183 (321)
Q Consensus 120 ILFIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp 183 (321)
||++|||+..=| .|...||+.||+-... +|.-+..+ =++..||+|+|-=
T Consensus 596 ViLlDEIEKAHp------------dV~nilLQVlDdGrLT--D~~Gr~Vd-FrNtiIImTSN~G 644 (786)
T COG0542 596 VILLDEIEKAHP------------DVFNLLLQVLDDGRLT--DGQGRTVD-FRNTIIIMTSNAG 644 (786)
T ss_pred EEEechhhhcCH------------HHHHHHHHHhcCCeee--cCCCCEEe-cceeEEEEecccc
Confidence 999999998533 3667899999853211 11111112 2478999999854
No 210
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.14 E-value=1.1e-05 Score=79.35 Aligned_cols=131 Identities=15% Similarity=0.193 Sum_probs=76.6
Q ss_pred HhccccCCCCcHHHHHHHHHHHcC---CceEEeeccccccccCCCcHHHHHHHHHHHH-------hh----hhhcCCceE
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMG---IEPVIMSAGELESERAGEPGKLIRERYRTAS-------QV----VQNQGKMSC 120 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g---~~~i~vs~~eL~s~~~GEser~IR~~F~~A~-------~~----~~~~gaPcI 120 (321)
-++|+|++||||+.+|+++..... .+|+.++++.+.+. .+-.++|-... .. .. +...-.
T Consensus 164 ~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~------~~~~~lfg~~~~~~~~~~~~~~g~~~-~a~~gt 236 (445)
T TIGR02915 164 TVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPEN------LLESELFGYEKGAFTGAVKQTLGKIE-YAHGGT 236 (445)
T ss_pred CEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChH------HHHHHhcCCCCCCcCCCccCCCCcee-ECCCCE
Confidence 467999999999999999987654 68999999877422 11122232110 00 00 113568
Q ss_pred EEeecccccCCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccccCCCCCCCcc--
Q 020787 121 LMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEK-- 198 (321)
Q Consensus 121 LFIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpALlRpGRfDr-- 198 (321)
|||||||.+-. .++..|+..+.+-..-.+++ . .....++-||+|||+.-. .+...|+|..
T Consensus 237 l~l~~i~~l~~------------~~q~~l~~~l~~~~~~~~~~-~--~~~~~~~rii~~~~~~l~---~~~~~~~~~~~L 298 (445)
T TIGR02915 237 LFLDEIGDLPL------------NLQAKLLRFLQERVIERLGG-R--EEIPVDVRIVCATNQDLK---RMIAEGTFREDL 298 (445)
T ss_pred EEEechhhCCH------------HHHHHHHHHHhhCeEEeCCC-C--ceeeeceEEEEecCCCHH---HHHHcCCccHHH
Confidence 99999999753 34455666665321111222 1 111236788998875532 3455566665
Q ss_pred -------eecCCCHHHHHH
Q 020787 199 -------FYWQPNLEDILN 210 (321)
Q Consensus 199 -------~i~~Pd~~~R~~ 210 (321)
.|.+|...+|.+
T Consensus 299 ~~~l~~~~i~lPpLr~R~~ 317 (445)
T TIGR02915 299 FYRIAEISITIPPLRSRDG 317 (445)
T ss_pred HHHhccceecCCCchhchh
Confidence 234687777765
No 211
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.13 E-value=5.2e-06 Score=83.57 Aligned_cols=75 Identities=15% Similarity=0.153 Sum_probs=56.6
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCC-----c-eEEeeccc---------------cccccCCCcHHHHH---HHHHHHHh
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGI-----E-PVIMSAGE---------------LESERAGEPGKLIR---ERYRTASQ 110 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~-----~-~i~vs~~e---------------L~s~~~GEser~IR---~~F~~A~~ 110 (321)
..||+||||||||+|++.|++.... . ++.+++.- +.+.+-..++..++ .+.+.|..
T Consensus 171 R~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~Ae~ 250 (416)
T PRK09376 171 RGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEKAKR 250 (416)
T ss_pred eEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999997754 3 33444332 56777788888888 45555654
Q ss_pred hhhhcCCceEEEeecccccC
Q 020787 111 VVQNQGKMSCLMINDIDAGL 130 (321)
Q Consensus 111 ~~~~~gaPcILFIDEIDAg~ 130 (321)
.. ..|+.++||||||...+
T Consensus 251 ~~-e~G~dVlL~iDsItR~a 269 (416)
T PRK09376 251 LV-EHGKDVVILLDSITRLA 269 (416)
T ss_pred HH-HcCCCEEEEEEChHHHH
Confidence 43 47899999999999754
No 212
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.12 E-value=6.3e-06 Score=77.49 Aligned_cols=74 Identities=18% Similarity=0.201 Sum_probs=49.5
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCc------eEEeecc------c----c-----ccccCCCcHHHHH---HHHHHHHh
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIE------PVIMSAG------E----L-----ESERAGEPGKLIR---ERYRTASQ 110 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~------~i~vs~~------e----L-----~s~~~GEser~IR---~~F~~A~~ 110 (321)
..+|.||+|||||++++.+++.+... ++.+++. + + .+.+-..+...++ .+...|..
T Consensus 18 r~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~~a~~ 97 (249)
T cd01128 18 RGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLEKAKR 97 (249)
T ss_pred EEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999988763 3333332 1 1 3333333333333 55555554
Q ss_pred hhhhcCCceEEEeeccccc
Q 020787 111 VVQNQGKMSCLMINDIDAG 129 (321)
Q Consensus 111 ~~~~~gaPcILFIDEIDAg 129 (321)
.. ..|+..+||||||...
T Consensus 98 ~~-~~G~~vll~iDei~r~ 115 (249)
T cd01128 98 LV-EHGKDVVILLDSITRL 115 (249)
T ss_pred HH-HCCCCEEEEEECHHHh
Confidence 43 3689999999999964
No 213
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.12 E-value=6.5e-06 Score=87.22 Aligned_cols=138 Identities=21% Similarity=0.334 Sum_probs=92.2
Q ss_pred HhccccCCCCcHHHHHHHHHHHcC----------CceEEeecccccc----------ccCCCc------HHHHHHHHHHH
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMG----------IEPVIMSAGELES----------ERAGEP------GKLIRERYRTA 108 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g----------~~~i~vs~~eL~s----------~~~GEs------er~IR~~F~~A 108 (321)
.+-|+|-||+|||..++.|-++|. ..++.|+|=.|.+ ++.|+. -..++..|...
T Consensus 424 ~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~ 503 (767)
T KOG1514|consen 424 CMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFTVP 503 (767)
T ss_pred eEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccC
Confidence 677899999999999999998765 4677888855543 345553 34556666522
Q ss_pred HhhhhhcCCceEEEeecccccCCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccc
Q 020787 109 SQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYA 188 (321)
Q Consensus 109 ~~~~~~~gaPcILFIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDp 188 (321)
. .+..||||+|||+|.++.| +|-| |-|+.| |-..+ ..++.||+-+|.-+..--
T Consensus 504 k----~~~~~~VvLiDElD~Lvtr---------~QdV---lYn~fd----------Wpt~~-~sKLvvi~IaNTmdlPEr 556 (767)
T KOG1514|consen 504 K----PKRSTTVVLIDELDILVTR---------SQDV---LYNIFD----------WPTLK-NSKLVVIAIANTMDLPER 556 (767)
T ss_pred C----CCCCCEEEEeccHHHHhcc---------cHHH---HHHHhc----------CCcCC-CCceEEEEecccccCHHH
Confidence 2 2568999999999999976 2444 566777 54444 567777777665443322
Q ss_pred cCC-CC-CCCc--ceecCC-CHHHHHHHHHHHhhcC
Q 020787 189 PLI-RD-GRME--KFYWQP-NLEDILNIVHRMYEKD 219 (321)
Q Consensus 189 ALl-Rp-GRfD--r~i~~P-d~~~R~~Il~~~~~~~ 219 (321)
=|. |+ -|++ |..+.| +.++-.+|+...+++.
T Consensus 557 ~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~ 592 (767)
T KOG1514|consen 557 LLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGL 592 (767)
T ss_pred HhccchhhhccceeeecCCCCHHHHHHHHHHhhcch
Confidence 222 22 2555 344667 7788888888776655
No 214
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.11 E-value=7.7e-06 Score=80.58 Aligned_cols=130 Identities=15% Similarity=0.198 Sum_probs=76.1
Q ss_pred HhccccCCCCcHHHHHHHHHHHc---CCceEEeeccccccccCCCcHHHHHHHHH-------HHHh----hhhhcCCceE
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM---GIEPVIMSAGELESERAGEPGKLIRERYR-------TASQ----VVQNQGKMSC 120 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~---g~~~i~vs~~eL~s~~~GEser~IR~~F~-------~A~~----~~~~~gaPcI 120 (321)
-++|.|.+||||+++|+++.... +.+|+.++++.+-+.+. -.++|- .|.. ... ......
T Consensus 159 ~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~------~~~lfg~~~~~~~~~~~~~~g~~~-~a~~gt 231 (463)
T TIGR01818 159 TVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLI------ESELFGHEKGAFTGANTRRQGRFE-QADGGT 231 (463)
T ss_pred eEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHH------HHHhcCCCCCCCCCcccCCCCcEE-ECCCCe
Confidence 47899999999999999998764 46899999887643221 111211 1100 000 124678
Q ss_pred EEeecccccCCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccccCCCCCCCcc--
Q 020787 121 LMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEK-- 198 (321)
Q Consensus 121 LFIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpALlRpGRfDr-- 198 (321)
|||||||.+-. .++..|+..+++-....+++. .....++-||+|||..-. .+++.|+|..
T Consensus 232 l~l~ei~~l~~------------~~q~~ll~~l~~~~~~~~~~~---~~~~~~~rii~~~~~~l~---~~~~~~~f~~~L 293 (463)
T TIGR01818 232 LFLDEIGDMPL------------DAQTRLLRVLADGEFYRVGGR---TPIKVDVRIVAATHQNLE---ALVRQGKFREDL 293 (463)
T ss_pred EEEEchhhCCH------------HHHHHHHHHHhcCcEEECCCC---ceeeeeeEEEEeCCCCHH---HHHHcCCcHHHH
Confidence 99999998743 234456666653211111110 111235778998875422 5667788763
Q ss_pred -------eecCCCHHHHH
Q 020787 199 -------FYWQPNLEDIL 209 (321)
Q Consensus 199 -------~i~~Pd~~~R~ 209 (321)
.|.+|...+|.
T Consensus 294 ~~rl~~~~i~lPpLr~R~ 311 (463)
T TIGR01818 294 FHRLNVIRIHLPPLRERR 311 (463)
T ss_pred HHHhCcceecCCCcccch
Confidence 34467766554
No 215
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.11 E-value=1.6e-05 Score=76.83 Aligned_cols=155 Identities=13% Similarity=0.167 Sum_probs=93.6
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCce----------EEeeccccc--cc---cCCCc--------------------HH
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEP----------VIMSAGELE--SE---RAGEP--------------------GK 99 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~----------i~vs~~eL~--s~---~~GEs--------------------er 99 (321)
.+++|||+|+||+.+|+++|+.+-+.- ...+-+|+. .+ .-|+. -.
T Consensus 28 a~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id 107 (314)
T PRK07399 28 AYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLE 107 (314)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccccccccchhhhhhccccccccccCcHH
Confidence 678999999999999999999875431 112223322 00 01211 12
Q ss_pred HHHHHHHHHHhhhhhcCCceEEEeecccccCCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEe
Q 020787 100 LIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFT 179 (321)
Q Consensus 100 ~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaa 179 (321)
.||++-+.+.... ..+.-.|++||+.|..-. .-...||..+.. + . +..+|..
T Consensus 108 ~ir~i~~~l~~~p-~~~~~kVvII~~ae~m~~------------~aaNaLLK~LEE-------------P-p-~~~fILi 159 (314)
T PRK07399 108 QIREIKRFLSRPP-LEAPRKVVVIEDAETMNE------------AAANALLKTLEE-------------P-G-NGTLILI 159 (314)
T ss_pred HHHHHHHHHccCc-ccCCceEEEEEchhhcCH------------HHHHHHHHHHhC-------------C-C-CCeEEEE
Confidence 5677766654332 246778999999987621 122346655553 2 2 4456777
Q ss_pred eCCCCCccccCCCCCCCcceec-CCCHHHHHHHHHHHhhcCCCCH--HHHHHhhhCCCCCcch
Q 020787 180 GNDFSTIYAPLIRDGRMEKFYW-QPNLEDILNIVHRMYEKDGITK--DEVGSIVKTFPNQALD 239 (321)
Q Consensus 180 TNrp~~LDpALlRpGRfDr~i~-~Pd~~~R~~Il~~~~~~~~l~~--~dl~~L~d~f~gq~id 239 (321)
|+.++.|.|+++= |--..-+ .|+.++-.++|.........+. ..+..++++=|+..+.
T Consensus 160 ~~~~~~Ll~TI~S--Rcq~i~f~~l~~~~~~~~L~~~~~~~~~~~~~~~l~~~a~Gs~~~al~ 220 (314)
T PRK07399 160 APSPESLLPTIVS--RCQIIPFYRLSDEQLEQVLKRLGDEEILNINFPELLALAQGSPGAAIA 220 (314)
T ss_pred ECChHhCcHHHHh--hceEEecCCCCHHHHHHHHHHhhccccchhHHHHHHHHcCCCHHHHHH
Confidence 8899999999875 5544444 3788888888886654444343 4555555544444443
No 216
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=98.10 E-value=2.1e-06 Score=84.78 Aligned_cols=101 Identities=17% Similarity=0.365 Sum_probs=61.2
Q ss_pred hHhccccCCCCcHHHHHHHHHHHcCC---------ceEEeeccccccccCCCcHHHHHHHHHHHHhhhhhcCCceEEEee
Q 020787 54 ASLCIWGGKGQGKSFQTELIFQAMGI---------EPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMIN 124 (321)
Q Consensus 54 ~iLgL~GPPGcGKTllaravA~e~g~---------~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~~gaPcILFID 124 (321)
..|.||||+|||||+|.-+.+..+-. +|..-.=.+|. ++.|+..- +-.-|.+++ +.-.+|+||
T Consensus 63 ~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~-~~~~~~~~----l~~va~~l~---~~~~lLcfD 134 (362)
T PF03969_consen 63 KGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLH-QLRGQDDP----LPQVADELA---KESRLLCFD 134 (362)
T ss_pred ceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHH-HHhCCCcc----HHHHHHHHH---hcCCEEEEe
Confidence 48899999999999999999988876 22111111111 11122221 222344443 356699999
Q ss_pred cccccCCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCC-CCcc
Q 020787 125 DIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDF-STIY 187 (321)
Q Consensus 125 EIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp-~~LD 187 (321)
|+.-- ++.+-++.+.|++.+= ..+|.+|+|.|++ +.|+
T Consensus 135 EF~V~---------DiaDAmil~rLf~~l~----------------~~gvvlVaTSN~~P~~Ly 173 (362)
T PF03969_consen 135 EFQVT---------DIADAMILKRLFEALF----------------KRGVVLVATSNRPPEDLY 173 (362)
T ss_pred eeecc---------chhHHHHHHHHHHHHH----------------HCCCEEEecCCCChHHHc
Confidence 98762 2334566666665432 2579999999985 3444
No 217
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.10 E-value=3.8e-06 Score=73.05 Aligned_cols=151 Identities=15% Similarity=0.272 Sum_probs=78.1
Q ss_pred HhccccCCCCcHHHHHHHHHHHcC-----CceEEe-eccc--------------------cc------------cccCCC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMG-----IEPVIM-SAGE--------------------LE------------SERAGE 96 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g-----~~~i~v-s~~e--------------------L~------------s~~~GE 96 (321)
...|+||.|+|||++++.+..... .-++.. .... +. ......
T Consensus 22 ~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 101 (234)
T PF01637_consen 22 HILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFIEETSLADELSEALGISIPSITLEKISKDLSED 101 (234)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHHHHHHHHCHCHHHHHHHCCTSTTEEEECTS-GG
T ss_pred EEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHHHHHHHHHHHHHHHhhhcccccchhhhhcchhh
Confidence 467999999999999999999882 111111 1100 00 001123
Q ss_pred cHHHHHHHHHHHHhhhhhcCCceEEEeecccccC-CCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCcc
Q 020787 97 PGKLIRERYRTASQVVQNQGKMSCLMINDIDAGL-GRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIP 175 (321)
Q Consensus 97 ser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~-~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~ 175 (321)
+...+..+++...+. +..+||+|||+|... +-. ....+...|.++++.. .. ..++.
T Consensus 102 ~~~~l~~~~~~l~~~----~~~~iiviDe~~~~~~~~~-------~~~~~~~~l~~~~~~~---------~~---~~~~~ 158 (234)
T PF01637_consen 102 SFSALERLLEKLKKK----GKKVIIVIDEFQYLAIASE-------EDKDFLKSLRSLLDSL---------LS---QQNVS 158 (234)
T ss_dssp -G--HHHHHHHHHHC----HCCEEEEEETGGGGGBCTT-------TTHHHHHHHHHHHHH----------------TTEE
T ss_pred HHHHHHHHHHHHHhc----CCcEEEEEecHHHHhhccc-------chHHHHHHHHHHHhhc---------cc---cCCce
Confidence 456666666665433 345999999999987 211 1134555677776621 01 24565
Q ss_pred EEEeeCCCCCcc------ccCCCCCCCcceecC-C-CHHHHHHHHHHHhhcC-CC--CHHHHHHhhh
Q 020787 176 IIFTGNDFSTIY------APLIRDGRMEKFYWQ-P-NLEDILNIVHRMYEKD-GI--TKDEVGSIVK 231 (321)
Q Consensus 176 VIaaTNrp~~LD------pALlRpGRfDr~i~~-P-d~~~R~~Il~~~~~~~-~l--~~~dl~~L~d 231 (321)
+|+++...+... +++ -||+.. +.+ | +.++-.++++..++.. .+ +.+++..+..
T Consensus 159 ~v~~~S~~~~~~~~~~~~~~~--~~~~~~-~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~i~~ 222 (234)
T PF01637_consen 159 IVITGSSDSLMEEFLDDKSPL--FGRFSH-IELKPLSKEEAREFLKELFKELIKLPFSDEDIEEIYS 222 (234)
T ss_dssp EEEEESSHHHHHHTT-TTSTT--TT---E-EEE----HHHHHHHHHHHHHCC------HHHHHHHHH
T ss_pred EEEECCchHHHHHhhcccCcc--ccccce-EEEeeCCHHHHHHHHHHHHHHhhcccCCHHHHHHHHH
Confidence 556554422221 122 246666 554 4 6677777887766554 22 6666655554
No 218
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=98.07 E-value=2.2e-06 Score=69.07 Aligned_cols=32 Identities=25% Similarity=0.369 Sum_probs=27.6
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeec
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSA 86 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~ 86 (321)
+.+|.||||+|||++|+.+|+++|+..+.++.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~~~~i~~d~ 32 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLGFPVISMDD 32 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTCEEEEEHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCeEEEecc
Confidence 35799999999999999999999987765544
No 219
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=98.05 E-value=5.3e-06 Score=68.35 Aligned_cols=38 Identities=29% Similarity=0.514 Sum_probs=31.3
Q ss_pred hccccCCCCcHHHHHHHHHHHcCCceEEeeccccccccCC
Q 020787 56 LCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAG 95 (321)
Q Consensus 56 LgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~~~G 95 (321)
+.+.||||||||++|+.++++++ ...++..++.....+
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~--~~~i~~D~~~~~~~~ 39 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG--AVVISQDEIRRRLAG 39 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST--EEEEEHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHHHHCC--CEEEeHHHHHHHHcc
Confidence 46899999999999999999999 556777666665555
No 220
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.04 E-value=2.6e-05 Score=75.78 Aligned_cols=130 Identities=15% Similarity=0.206 Sum_probs=81.6
Q ss_pred hHhccccCCCCcHHHHHHHHHHHcCCc-------------------------eEEeeccccccccCCC-----cHHHHHH
Q 020787 54 ASLCIWGGKGQGKSFQTELIFQAMGIE-------------------------PVIMSAGELESERAGE-----PGKLIRE 103 (321)
Q Consensus 54 ~iLgL~GPPGcGKTllaravA~e~g~~-------------------------~i~vs~~eL~s~~~GE-----ser~IR~ 103 (321)
-.++++||+|+|||.+|+++|+.+-+. |+.+++.+= ++-.|. +=..||+
T Consensus 22 hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~-~~~~g~~~~~I~id~iR~ 100 (325)
T PRK08699 22 NAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSD-EPENGRKLLQIKIDAVRE 100 (325)
T ss_pred eEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccc-cccccccCCCcCHHHHHH
Confidence 468999999999999999999997642 233332110 000121 2346888
Q ss_pred HHHHHHhhhhhcCCceEEEeecccccCCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCC
Q 020787 104 RYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDF 183 (321)
Q Consensus 104 ~F~~A~~~~~~~gaPcILFIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp 183 (321)
+-+.+.... ..+.--|++||++|..-. .....|+..+..| ..++.+|.+|+++
T Consensus 101 l~~~~~~~p-~~~~~kV~iiEp~~~Ld~------------~a~naLLk~LEep--------------~~~~~~Ilvth~~ 153 (325)
T PRK08699 101 IIDNVYLTS-VRGGLRVILIHPAESMNL------------QAANSLLKVLEEP--------------PPQVVFLLVSHAA 153 (325)
T ss_pred HHHHHhhCc-ccCCceEEEEechhhCCH------------HHHHHHHHHHHhC--------------cCCCEEEEEeCCh
Confidence 877775432 245678999999998742 1222355555422 2356678899999
Q ss_pred CCccccCCCCCCCcceec-CCCHHHHHHHHH
Q 020787 184 STIYAPLIRDGRMEKFYW-QPNLEDILNIVH 213 (321)
Q Consensus 184 ~~LDpALlRpGRfDr~i~-~Pd~~~R~~Il~ 213 (321)
+.+.|+++. |.-.+.+ .|+.++-.+.|.
T Consensus 154 ~~ll~ti~S--Rc~~~~~~~~~~~~~~~~L~ 182 (325)
T PRK08699 154 DKVLPTIKS--RCRKMVLPAPSHEEALAYLR 182 (325)
T ss_pred HhChHHHHH--HhhhhcCCCCCHHHHHHHHH
Confidence 999999877 5444333 366776665554
No 221
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.04 E-value=2.1e-05 Score=67.65 Aligned_cols=32 Identities=25% Similarity=0.289 Sum_probs=23.5
Q ss_pred HhccccCCCCcHHHHHHHHHHH---cCCceEEeec
Q 020787 55 SLCIWGGKGQGKSFQTELIFQA---MGIEPVIMSA 86 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e---~g~~~i~vs~ 86 (321)
+.+|+||||||||.+|..++.+ .|-+.+.++.
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~ 35 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTL 35 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEEC
Confidence 3679999999999999776553 3555555554
No 222
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.03 E-value=7.2e-06 Score=69.69 Aligned_cols=36 Identities=14% Similarity=0.278 Sum_probs=24.5
Q ss_pred hHhccccCCCCcHHHHHHHHHHHcCCc---eEEeecccc
Q 020787 54 ASLCIWGGKGQGKSFQTELIFQAMGIE---PVIMSAGEL 89 (321)
Q Consensus 54 ~iLgL~GPPGcGKTllaravA~e~g~~---~i~vs~~eL 89 (321)
..++|+||||||||+++++++..+... ++.+.....
T Consensus 25 ~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 25 RNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp --EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 488999999999999999888776554 665554333
No 223
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.03 E-value=5.3e-06 Score=85.09 Aligned_cols=23 Identities=22% Similarity=0.466 Sum_probs=20.6
Q ss_pred HhccccCCCCcHHHHHHHHHHHc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM 77 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~ 77 (321)
.++|.||||||||+++++++..+
T Consensus 213 ~vlliG~pGsGKTtlar~l~~ll 235 (499)
T TIGR00368 213 NLLLFGPPGSGKTMLASRLQGIL 235 (499)
T ss_pred EEEEEecCCCCHHHHHHHHhccc
Confidence 68999999999999999998743
No 224
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.02 E-value=3.3e-05 Score=85.70 Aligned_cols=27 Identities=26% Similarity=0.538 Sum_probs=24.2
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCce
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEP 81 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~ 81 (321)
+++||||+|+|||++|+++++.+.-.|
T Consensus 209 vvgI~G~gGiGKTTLA~~l~~~l~~~F 235 (1153)
T PLN03210 209 MVGIWGSSGIGKTTIARALFSRLSRQF 235 (1153)
T ss_pred EEEEEcCCCCchHHHHHHHHHHHhhcC
Confidence 789999999999999999999876544
No 225
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.01 E-value=5.4e-06 Score=69.70 Aligned_cols=57 Identities=25% Similarity=0.317 Sum_probs=41.8
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCC---ceEEeeccccccccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeecccccC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGI---EPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGL 130 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~---~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~ 130 (321)
-++|+|+||+||+++|+++....+- +|+.+.+.++- .+.++.| +...|||+|||..-
T Consensus 23 pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~-----------~~~l~~a--------~~gtL~l~~i~~L~ 82 (138)
T PF14532_consen 23 PVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP-----------AELLEQA--------KGGTLYLKNIDRLS 82 (138)
T ss_dssp -EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC-----------HHHHHHC--------TTSEEEEECGCCS-
T ss_pred cEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc-----------HHHHHHc--------CCCEEEECChHHCC
Confidence 4789999999999999999988774 55555555433 3345443 57889999999974
No 226
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.98 E-value=9.8e-06 Score=68.44 Aligned_cols=41 Identities=27% Similarity=0.396 Sum_probs=33.2
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeeccccccccCCCc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEP 97 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~~~GEs 97 (321)
.+.|.||||||||++++++|+++|+.++. ..++.....|.+
T Consensus 6 ~i~l~G~~GsGKstla~~La~~l~~~~~d--~d~~~~~~~g~~ 46 (175)
T PRK00131 6 NIVLIGFMGAGKSTIGRLLAKRLGYDFID--TDHLIEARAGKS 46 (175)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEE--ChHHHHHHcCCC
Confidence 46899999999999999999999998884 455555555644
No 227
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=97.96 E-value=6.9e-05 Score=77.49 Aligned_cols=176 Identities=17% Similarity=0.273 Sum_probs=112.3
Q ss_pred HHHHHhhhhhhccCccccchhhhh---------HhccccCCCCcHHHHHHHHHHHcCCce--E-----------Eeecc-
Q 020787 31 YRQKVTRSFEYLQGDYYIAPVFMA---------SLCIWGGKGQGKSFQTELIFQAMGIEP--V-----------IMSAG- 87 (321)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~p~f~~---------iLgL~GPPGcGKTllaravA~e~g~~~--i-----------~vs~~- 87 (321)
||-+-.++|.+++|.=+|.-.+-. -.++.||-|||||++||.+|+.+++.= . .+..+
T Consensus 7 ~rKyRP~~F~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I~~g~ 86 (515)
T COG2812 7 ARKYRPKTFDDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEINEGS 86 (515)
T ss_pred HHHhCcccHHHhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHhhhcCC
Confidence 666677788888998887766554 788999999999999999999999852 1 11112
Q ss_pred --cccc--ccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeecccccCCCCCCCccchhhHHHHHHHHhhcCCCCccccCc
Q 020787 88 --ELES--ERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQ 163 (321)
Q Consensus 88 --eL~s--~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g 163 (321)
+++. .-.-.+=.-||++-+++. .+-..++.-|.+|||++-+.. +..++ ||--+-
T Consensus 87 ~~DviEiDaASn~gVddiR~i~e~v~-y~P~~~ryKVyiIDEvHMLS~-----------~afNA-LLKTLE--------- 144 (515)
T COG2812 87 LIDVIEIDAASNTGVDDIREIIEKVN-YAPSEGRYKVYIIDEVHMLSK-----------QAFNA-LLKTLE--------- 144 (515)
T ss_pred cccchhhhhhhccChHHHHHHHHHhc-cCCccccceEEEEecHHhhhH-----------HHHHH-Hhcccc---------
Confidence 2221 111224456787777764 444578899999999998742 23444 332222
Q ss_pred cccccCCCCCccEEEeeCCCCCcccc-CCCCCCCcceecCCCHHHHHHHHHHHhhcCCC--CHHHHHHhhhCCCC
Q 020787 164 DWRESDITNRIPIIFTGNDFSTIYAP-LIRDGRMEKFYWQPNLEDILNIVHRMYEKDGI--TKDEVGSIVKTFPN 235 (321)
Q Consensus 164 ~~~~~~~~~~V~VIaaTNrp~~LDpA-LlRpGRfDr~i~~Pd~~~R~~Il~~~~~~~~l--~~~dl~~L~d~f~g 235 (321)
++ -++|..|.||..|..|++- |=|-=|||-.- + +.++...-|..++.+.++ +.+.+..++....|
T Consensus 145 ----EP-P~hV~FIlATTe~~Kip~TIlSRcq~f~fkr-i-~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~G 212 (515)
T COG2812 145 ----EP-PSHVKFILATTEPQKIPNTILSRCQRFDFKR-L-DLEEIAKHLAAILDKEGINIEEDALSLIARAAEG 212 (515)
T ss_pred ----cC-ccCeEEEEecCCcCcCchhhhhccccccccC-C-CHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCC
Confidence 22 4689889999999999998 44555655211 1 333555555566655554 33444444444444
No 228
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.95 E-value=1.1e-05 Score=69.68 Aligned_cols=36 Identities=33% Similarity=0.570 Sum_probs=30.7
Q ss_pred hccccCCCCcHHHHHHHHHHHcCCceEEeecccccccc
Q 020787 56 LCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESER 93 (321)
Q Consensus 56 LgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~~ 93 (321)
+.|.||||+|||++|+.+|+++|+ .+++.++++.+.
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~--~~is~~d~lr~~ 37 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGF--THLSAGDLLRAE 37 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCC--eEEECChHHHHH
Confidence 578999999999999999999985 667777777644
No 229
>PRK13947 shikimate kinase; Provisional
Probab=97.94 E-value=2.1e-05 Score=67.31 Aligned_cols=41 Identities=12% Similarity=0.118 Sum_probs=33.3
Q ss_pred hccccCCCCcHHHHHHHHHHHcCCceEEeeccccccccCCCcH
Q 020787 56 LCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPG 98 (321)
Q Consensus 56 LgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~~~GEse 98 (321)
+.|.||||||||++++.+|+++|.+|+. ..++.....|.+.
T Consensus 4 I~l~G~~GsGKst~a~~La~~lg~~~id--~d~~~~~~~g~~~ 44 (171)
T PRK13947 4 IVLIGFMGTGKTTVGKRVATTLSFGFID--TDKEIEKMTGMTV 44 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCEEE--CchhhhhhcCCcH
Confidence 5789999999999999999999999865 4445666666654
No 230
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.94 E-value=3.9e-05 Score=67.97 Aligned_cols=34 Identities=21% Similarity=0.266 Sum_probs=26.3
Q ss_pred HhccccCCCCcHHHHHHHHHHHc---CCceEEeeccc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM---GIEPVIMSAGE 88 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~---g~~~i~vs~~e 88 (321)
+..|+||||||||.+|..+|.+. |-..+-++..+
T Consensus 14 i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~ 50 (209)
T TIGR02237 14 ITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG 50 (209)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 67899999999999998887543 54566666654
No 231
>PRK14532 adenylate kinase; Provisional
Probab=97.94 E-value=5.6e-06 Score=72.32 Aligned_cols=36 Identities=25% Similarity=0.482 Sum_probs=30.2
Q ss_pred hccccCCCCcHHHHHHHHHHHcCCceEEeecccccccc
Q 020787 56 LCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESER 93 (321)
Q Consensus 56 LgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~~ 93 (321)
+.|.||||||||++|+.+|+++|+ .+++.++++.+.
T Consensus 3 i~~~G~pGsGKsT~a~~la~~~g~--~~is~~d~lr~~ 38 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEERGM--VQLSTGDMLRAA 38 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCC--eEEeCcHHHHHH
Confidence 568999999999999999999985 556777777653
No 232
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=97.92 E-value=2.4e-05 Score=65.72 Aligned_cols=35 Identities=20% Similarity=0.364 Sum_probs=28.3
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeecccccc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELES 91 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s 91 (321)
+++|.||||+|||++|+.+++.+++.++ +...+..
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~~~~~i--~~D~~~~ 35 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERLGAPFI--DGDDLHP 35 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhcCCEEE--eCccccc
Confidence 4689999999999999999999987665 4444443
No 233
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.90 E-value=8.1e-05 Score=72.55 Aligned_cols=153 Identities=14% Similarity=0.188 Sum_probs=90.4
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEE----------e---eccccc----cc-cCCC------cHHHHHHHHHHHHh
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVI----------M---SAGELE----SE-RAGE------PGKLIRERYRTASQ 110 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~----------v---s~~eL~----s~-~~GE------ser~IR~~F~~A~~ 110 (321)
-++++||+|+||+.+|.++|+.+-+.--. + +-+|+. .+ ..|+ +=..||++-+.+..
T Consensus 28 A~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l~~~~~~ 107 (319)
T PRK08769 28 GLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREISQKLAL 107 (319)
T ss_pred eEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHHHHHHhh
Confidence 57899999999999999999887653100 0 002221 00 1121 12356766665543
Q ss_pred hhhhcCCceEEEeecccccCCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccccC
Q 020787 111 VVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPL 190 (321)
Q Consensus 111 ~~~~~gaPcILFIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpAL 190 (321)
.. ..|.=-|++||+.|+.-. .-. ..||..+.. + ..++.+|.+||.++.|.|.+
T Consensus 108 ~p-~~g~~kV~iI~~ae~m~~-----------~Aa-NaLLKtLEE-------------P-p~~~~fiL~~~~~~~lLpTI 160 (319)
T PRK08769 108 TP-QYGIAQVVIVDPADAINR-----------AAC-NALLKTLEE-------------P-SPGRYLWLISAQPARLPATI 160 (319)
T ss_pred Cc-ccCCcEEEEeccHhhhCH-----------HHH-HHHHHHhhC-------------C-CCCCeEEEEECChhhCchHH
Confidence 22 134457999999998731 112 235555442 2 45788888899999999887
Q ss_pred CCCCCCcceec-CCCHHHHHHHHHHHhhcCCCCHHH---HHHhhhCCCCCcchh
Q 020787 191 IRDGRMEKFYW-QPNLEDILNIVHRMYEKDGITKDE---VGSIVKTFPNQALDF 240 (321)
Q Consensus 191 lRpGRfDr~i~-~Pd~~~R~~Il~~~~~~~~l~~~d---l~~L~d~f~gq~idf 240 (321)
+= |.-...+ .|+.++-.+.|.. .+++..+ +..++.+-|+..+.+
T Consensus 161 rS--RCq~i~~~~~~~~~~~~~L~~----~~~~~~~a~~~~~l~~G~p~~A~~~ 208 (319)
T PRK08769 161 RS--RCQRLEFKLPPAHEALAWLLA----QGVSERAAQEALDAARGHPGLAAQW 208 (319)
T ss_pred Hh--hheEeeCCCcCHHHHHHHHHH----cCCChHHHHHHHHHcCCCHHHHHHH
Confidence 75 6655444 3777666666542 3566553 444554444444443
No 234
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.89 E-value=5.5e-05 Score=68.28 Aligned_cols=29 Identities=24% Similarity=0.118 Sum_probs=23.3
Q ss_pred ccccchhhhhHhccccCCCCcHHHHHHHHHH
Q 020787 45 DYYIAPVFMASLCIWGGKGQGKSFQTELIFQ 75 (321)
Q Consensus 45 ~~~~~p~f~~iLgL~GPPGcGKTllaravA~ 75 (321)
++.+.+- .+++|.||+|||||++.|+++.
T Consensus 19 ~i~l~~g--~~~~ltGpNg~GKSTllr~i~~ 47 (199)
T cd03283 19 DIDMEKK--NGILITGSNMSGKSTFLRTIGV 47 (199)
T ss_pred eEEEcCC--cEEEEECCCCCChHHHHHHHHH
Confidence 3344443 5889999999999999999984
No 235
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=97.87 E-value=7.4e-06 Score=85.73 Aligned_cols=58 Identities=17% Similarity=0.261 Sum_probs=45.6
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCce----EEeec------cccccccCCCcHHHHHHHHHHHHhhh
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEP----VIMSA------GELESERAGEPGKLIRERYRTASQVV 112 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~----i~vs~------~eL~s~~~GEser~IR~~F~~A~~~~ 112 (321)
.+.|+||||||||++|+++|+.+..+. +.+.- +-+.+-|.|++++.++..|.+|++..
T Consensus 39 ~~ll~G~pG~GKT~la~~la~~l~~~~~~~~~~~~n~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~ 106 (608)
T TIGR00764 39 NVLLIGEPGVGKSMLAKAMAELLPDEELEDILVYPNPEDPNMPRIVEVPAGEGREIVEDYKKKAFKQP 106 (608)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCchhheeEEEEeCCCCCchHHHHHHHHhhchHHHHHHHHHhhccc
Confidence 566999999999999999999998752 22222 23344589999999999999998653
No 236
>PHA00729 NTP-binding motif containing protein
Probab=97.84 E-value=2.3e-05 Score=73.34 Aligned_cols=27 Identities=22% Similarity=0.261 Sum_probs=23.8
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCce
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEP 81 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~ 81 (321)
.++|+||||+|||++|.++|.+++..+
T Consensus 19 nIlItG~pGvGKT~LA~aLa~~l~~~l 45 (226)
T PHA00729 19 SAVIFGKQGSGKTTYALKVARDVFWKL 45 (226)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhhc
Confidence 578999999999999999999987433
No 237
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.83 E-value=3e-05 Score=67.72 Aligned_cols=108 Identities=19% Similarity=0.217 Sum_probs=69.1
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCc-----------------------eEEeeccccccccCCCcHHHHHHHHHHHHhh
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIE-----------------------PVIMSAGELESERAGEPGKLIRERYRTASQV 111 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~-----------------------~i~vs~~eL~s~~~GEser~IR~~F~~A~~~ 111 (321)
.++||||+|+||+.+|++.|+.+-+. ++.++..+--. .. +-..||++-..+...
T Consensus 21 a~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~-~i--~i~~ir~i~~~~~~~ 97 (162)
T PF13177_consen 21 ALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKK-SI--KIDQIREIIEFLSLS 97 (162)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSS-SB--SHHHHHHHHHHCTSS
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccc-hh--hHHHHHHHHHHHHHH
Confidence 68999999999999999999887542 33333322100 01 236777777766433
Q ss_pred hhhcCCceEEEeecccccCCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccccCC
Q 020787 112 VQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLI 191 (321)
Q Consensus 112 ~~~~gaPcILFIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpALl 191 (321)
. ..+..-|++|||+|.... ....-||..|..| ..++.+|.+|+.++.|-|+++
T Consensus 98 ~-~~~~~KviiI~~ad~l~~------------~a~NaLLK~LEep--------------p~~~~fiL~t~~~~~il~TI~ 150 (162)
T PF13177_consen 98 P-SEGKYKVIIIDEADKLTE------------EAQNALLKTLEEP--------------PENTYFILITNNPSKILPTIR 150 (162)
T ss_dssp --TTSSSEEEEEETGGGS-H------------HHHHHHHHHHHST--------------TTTEEEEEEES-GGGS-HHHH
T ss_pred H-hcCCceEEEeehHhhhhH------------HHHHHHHHHhcCC--------------CCCEEEEEEECChHHChHHHH
Confidence 2 246788999999998642 1223455555532 468889999999999988765
Q ss_pred C
Q 020787 192 R 192 (321)
Q Consensus 192 R 192 (321)
=
T Consensus 151 S 151 (162)
T PF13177_consen 151 S 151 (162)
T ss_dssp T
T ss_pred h
Confidence 3
No 238
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.83 E-value=7.6e-05 Score=66.59 Aligned_cols=74 Identities=20% Similarity=0.241 Sum_probs=45.8
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEE-------------ee---------cccc-ccccCCCcHHHHHHHHHHHHhh
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVI-------------MS---------AGEL-ESERAGEPGKLIRERYRTASQV 111 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~-------------vs---------~~eL-~s~~~GEser~IR~~F~~A~~~ 111 (321)
+++|.||+|||||+|.++++...|-..+. +. -.+. .++..++-..--+++..-|+..
T Consensus 23 ~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~~q~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~laral 102 (176)
T cd03238 23 LVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFIDQLQFLIDVGLGYLTLGQKLSTLSGGELQRVKLASEL 102 (176)
T ss_pred EEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEEhHHHHHHHcCCCccccCCCcCcCCHHHHHHHHHHHHH
Confidence 78999999999999999997543432111 00 0000 1112222122235667777777
Q ss_pred hhhcCC--ceEEEeecccccCC
Q 020787 112 VQNQGK--MSCLMINDIDAGLG 131 (321)
Q Consensus 112 ~~~~ga--PcILFIDEIDAg~~ 131 (321)
+. . |.+|++||--++..
T Consensus 103 ~~---~~~p~llLlDEPt~~LD 121 (176)
T cd03238 103 FS---EPPGTLFILDEPSTGLH 121 (176)
T ss_pred hh---CCCCCEEEEeCCcccCC
Confidence 54 7 99999999988763
No 239
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.83 E-value=8.9e-06 Score=69.96 Aligned_cols=36 Identities=36% Similarity=0.549 Sum_probs=29.8
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeeccccccc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESE 92 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~ 92 (321)
+++|.||||+|||++|+.+|+++|+ ..++.++++.+
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~~~g~--~~~~~g~~~~~ 40 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEKYGF--THLSTGDLLRA 40 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC--cEEeHHHHHHH
Confidence 6789999999999999999999975 45666666644
No 240
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.82 E-value=1.8e-05 Score=65.99 Aligned_cols=40 Identities=33% Similarity=0.472 Sum_probs=32.3
Q ss_pred hccccCCCCcHHHHHHHHHHHcCCceEEeeccccccccCCCc
Q 020787 56 LCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEP 97 (321)
Q Consensus 56 LgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~~~GEs 97 (321)
+.|+||||||||++++++|+++|+.++.. .++.....|.+
T Consensus 2 i~l~G~~GsGKstla~~la~~l~~~~~~~--d~~~~~~~~~~ 41 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALGLPFVDL--DELIEQRAGMS 41 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCEEEc--hHHHHHHcCCC
Confidence 57899999999999999999999988744 46665555554
No 241
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=97.80 E-value=6.9e-05 Score=66.79 Aligned_cols=110 Identities=15% Similarity=0.065 Sum_probs=63.3
Q ss_pred hHhccccCCCCcHHHHHHHHH-----HHcCCce--------------EEeeccccccccCCCcHHHHHHHHHHHHhhhhh
Q 020787 54 ASLCIWGGKGQGKSFQTELIF-----QAMGIEP--------------VIMSAGELESERAGEPGKLIRERYRTASQVVQN 114 (321)
Q Consensus 54 ~iLgL~GPPGcGKTllaravA-----~e~g~~~--------------i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~ 114 (321)
+.++|.||+|+|||++.++++ .+.|... ..+...+-...+.+.-..-+++ +..+.+.
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~~~~~~i~~~dqi~~~~~~~d~i~~~~s~~~~e~~~-l~~i~~~--- 105 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVPAESASIPLVDRIFTRIGAEDSISDGRSTFMAELLE-LKEILSL--- 105 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHHHHHHHHcCCCccccccccCCcCEEEEEecCcccccCCceeHHHHHHH-HHHHHHh---
Confidence 689999999999999999999 3445311 1222233333333333333433 3333333
Q ss_pred cCCceEEEeecccccCCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccccC
Q 020787 115 QGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPL 190 (321)
Q Consensus 115 ~gaPcILFIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpAL 190 (321)
...|.++++||.-++.-.. ....+...++..+. ..+..||++|.+.+.+..+-
T Consensus 106 ~~~~~llllDEp~~gld~~-------~~~~l~~~ll~~l~----------------~~~~~vi~~tH~~~~~~~~~ 158 (202)
T cd03243 106 ATPRSLVLIDELGRGTSTA-------EGLAIAYAVLEHLL----------------EKGCRTLFATHFHELADLPE 158 (202)
T ss_pred ccCCeEEEEecCCCCCCHH-------HHHHHHHHHHHHHH----------------hcCCeEEEECChHHHHHHhh
Confidence 3489999999998876321 11223333443322 12566888888776665443
No 242
>PRK08118 topology modulation protein; Reviewed
Probab=97.78 E-value=4.3e-05 Score=67.10 Aligned_cols=45 Identities=20% Similarity=0.223 Sum_probs=33.7
Q ss_pred hccccCCCCcHHHHHHHHHHHcCCceEEeeccccccccCCCcHHH
Q 020787 56 LCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKL 100 (321)
Q Consensus 56 LgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~~~GEser~ 100 (321)
..|.||||+|||++|+.++++++++++.+..==-...|...+...
T Consensus 4 I~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~~~w~~~~~~~ 48 (167)
T PRK08118 4 IILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWKPNWEGVPKEE 48 (167)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcCCCHHH
Confidence 568999999999999999999999988776421123355555443
No 243
>PRK13695 putative NTPase; Provisional
Probab=97.77 E-value=0.00011 Score=63.88 Aligned_cols=22 Identities=27% Similarity=0.280 Sum_probs=19.7
Q ss_pred hccccCCCCcHHHHHHHHHHHc
Q 020787 56 LCIWGGKGQGKSFQTELIFQAM 77 (321)
Q Consensus 56 LgL~GPPGcGKTllaravA~e~ 77 (321)
++|.|+||||||++++.++.++
T Consensus 3 i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 3 IGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 5789999999999999988775
No 244
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.76 E-value=5.4e-05 Score=76.50 Aligned_cols=91 Identities=19% Similarity=0.170 Sum_probs=57.0
Q ss_pred HHHHhhhhhhccCccccchhhhhHhccccCCCCcHHHHHHHHHHHc---CCceEEeecccccccc------CCC------
Q 020787 32 RQKVTRSFEYLQGDYYIAPVFMASLCIWGGKGQGKSFQTELIFQAM---GIEPVIMSAGELESER------AGE------ 96 (321)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~p~f~~iLgL~GPPGcGKTllaravA~e~---g~~~i~vs~~eL~s~~------~GE------ 96 (321)
-.+....|+.+-||= ++|- .+.+|+||||+|||+++..+|... |-..+.+++-|-.+.. .|.
T Consensus 62 i~TGi~~LD~~LgGG-i~~G--s~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~ 138 (446)
T PRK11823 62 ISTGIGELDRVLGGG-LVPG--SVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLY 138 (446)
T ss_pred ccCCcHHHHHHhcCC-ccCC--EEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEE
Confidence 344556677766542 2221 277899999999999999988765 5677778775433221 111
Q ss_pred --cHHHHHHHHHHHHhhhhhcCCceEEEeecccccC
Q 020787 97 --PGKLIRERYRTASQVVQNQGKMSCLMINDIDAGL 130 (321)
Q Consensus 97 --ser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~ 130 (321)
++..+.++.+... ..+|.+|+||+|-+..
T Consensus 139 ~~~e~~l~~i~~~i~-----~~~~~lVVIDSIq~l~ 169 (446)
T PRK11823 139 LLAETNLEAILATIE-----EEKPDLVVIDSIQTMY 169 (446)
T ss_pred EeCCCCHHHHHHHHH-----hhCCCEEEEechhhhc
Confidence 1112333333332 3479999999999865
No 245
>PRK06762 hypothetical protein; Provisional
Probab=97.74 E-value=2.7e-05 Score=66.60 Aligned_cols=40 Identities=18% Similarity=0.327 Sum_probs=32.2
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeeccccccccC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERA 94 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~~~ 94 (321)
+++|.|+||||||++|+.+++.++.+.+.++..++.....
T Consensus 4 li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r~~l~ 43 (166)
T PRK06762 4 LIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVRRDML 43 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHHHHhc
Confidence 4678999999999999999999977777777766554333
No 246
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=97.73 E-value=2.4e-05 Score=78.64 Aligned_cols=128 Identities=13% Similarity=0.160 Sum_probs=79.4
Q ss_pred HhccccCCCCcHHHHHHHHHHH----cCCceEEeeccccccc-------------cCCCcHHHHHHHHHHHHhhhhhcCC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQA----MGIEPVIMSAGELESE-------------RAGEPGKLIRERYRTASQVVQNQGK 117 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e----~g~~~i~vs~~eL~s~-------------~~GEser~IR~~F~~A~~~~~~~ga 117 (321)
-++|.|++|+||+++|+++... .+.+||.++++.+-.. +.| ....=.-+|+.|-
T Consensus 103 ~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~en~~~~eLFG~~kGaftG-a~~~k~Glfe~A~-------- 173 (403)
T COG1221 103 PVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSENLQEAELFGHEKGAFTG-AQGGKAGLFEQAN-------- 173 (403)
T ss_pred cEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCcCHHHHHHhccccceeec-ccCCcCchheecC--------
Confidence 6789999999999999988643 4679999999776532 223 1112223555542
Q ss_pred ceEEEeecccccCCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccccCCCCCCCc
Q 020787 118 MSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRME 197 (321)
Q Consensus 118 PcILFIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpALlRpGRfD 197 (321)
==.||+|||--.-+ .++..|+..+|.-+..-+++ ..+....|.+|+||| ..++.+++. | .|
T Consensus 174 GGtLfLDEI~~LP~------------~~Q~kLl~~le~g~~~rvG~---~~~~~~dVRli~AT~--~~l~~~~~~-g-~d 234 (403)
T COG1221 174 GGTLFLDEIHRLPP------------EGQEKLLRVLEEGEYRRVGG---SQPRPVDVRLICATT--EDLEEAVLA-G-AD 234 (403)
T ss_pred CCEEehhhhhhCCH------------hHHHHHHHHHHcCceEecCC---CCCcCCCceeeeccc--cCHHHHHHh-h-cc
Confidence 34799999976532 24456777777544333443 123356899999987 334444433 3 33
Q ss_pred c-------eecCCCHHHHHH
Q 020787 198 K-------FYWQPNLEDILN 210 (321)
Q Consensus 198 r-------~i~~Pd~~~R~~ 210 (321)
- .|.+|...+|.+
T Consensus 235 l~~rl~~~~I~LPpLrER~~ 254 (403)
T COG1221 235 LTRRLNILTITLPPLRERKE 254 (403)
T ss_pred hhhhhcCceecCCChhhchh
Confidence 2 234577766643
No 247
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=97.73 E-value=3.6e-05 Score=67.02 Aligned_cols=33 Identities=15% Similarity=0.175 Sum_probs=28.6
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeecc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAG 87 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~ 87 (321)
++.|.||||+|||++|++++++++..+++++.-
T Consensus 4 ~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D 36 (175)
T cd00227 4 IIILNGGSSAGKSSIARALQSVLAEPWLHFGVD 36 (175)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCCCccccCcc
Confidence 578999999999999999999999887766543
No 248
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=97.72 E-value=0.00012 Score=79.83 Aligned_cols=150 Identities=20% Similarity=0.268 Sum_probs=97.0
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeeccccccccC-----CC--cHHHHHHHH--HHHHhhhhhcCCce-EEEee
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERA-----GE--PGKLIRERY--RTASQVVQNQGKMS-CLMIN 124 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~~~-----GE--ser~IR~~F--~~A~~~~~~~gaPc-ILFID 124 (321)
++++.||||.|||..+.++|.++|-.++..++++.=|++. |+ +-..|-.-| ..++.. ...+. ||+||
T Consensus 359 ~~l~~G~pGigKT~~~h~~~k~~g~~v~E~Nas~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~---~~~~~~vil~d 435 (871)
T KOG1968|consen 359 ALLLSGPPGIGKTTAAHKAAKELGFKVVEKNASDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQS---LNSDHFLILMD 435 (871)
T ss_pred HHHhcCCCCCCchhhHhhhhhhcccceeecCccccccccHHHhhhhccccccchhhhhcccccccc---cccceeEEEEe
Confidence 6899999999999999999999999999999987665432 22 112222222 001111 11334 99999
Q ss_pred cccccCCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccc-cCCCCCCCcceecCC
Q 020787 125 DIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYA-PLIRDGRMEKFYWQP 203 (321)
Q Consensus 125 EIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDp-ALlRpGRfDr~i~~P 203 (321)
|+|...+ -+ +-..+.|-.++. ....|||+|.|+.+-... +|-|.+ +|-.+--|
T Consensus 436 evD~~~~-~d--------Rg~v~~l~~l~~----------------ks~~Piv~~cndr~~p~sr~~~~~~-~~l~f~kP 489 (871)
T KOG1968|consen 436 EVDGMFG-ED--------RGGVSKLSSLCK----------------KSSRPLVCTCNDRNLPKSRALSRAC-SDLRFSKP 489 (871)
T ss_pred ccccccc-hh--------hhhHHHHHHHHH----------------hccCCeEEEecCCCCccccchhhhc-ceeeecCC
Confidence 9999764 11 111222322332 246899999999887777 677766 55555568
Q ss_pred CHHHHHHHHHHHhhcC--CCCHHHHHHhhhCC
Q 020787 204 NLEDILNIVHRMYEKD--GITKDEVGSIVKTF 233 (321)
Q Consensus 204 d~~~R~~Il~~~~~~~--~l~~~dl~~L~d~f 233 (321)
+...+..=+..++... .|+...+..++...
T Consensus 490 ~~~~i~~ri~si~~se~~ki~~~~l~~~s~~~ 521 (871)
T KOG1968|consen 490 SSELIRSRIMSICKSEGIKISDDVLEEISKLS 521 (871)
T ss_pred cHHHHHhhhhhhhcccceecCcHHHHHHHHhc
Confidence 8887776555555444 37777788777543
No 249
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.71 E-value=2.2e-05 Score=66.90 Aligned_cols=71 Identities=18% Similarity=0.216 Sum_probs=43.7
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCc--eEEeeccccccccCC-CcHHHHHHHHHHHHhhhhhcCCceEEEeecccccC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIE--PVIMSAGELESERAG-EPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGL 130 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~--~i~vs~~eL~s~~~G-Eser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~ 130 (321)
+++|.||+|||||++.++++...... -|.+.+. ..-.|+- =|.-. +++..-|+..+. .|.++++||-.++.
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~-~~i~~~~~lS~G~-~~rv~laral~~---~p~illlDEP~~~L 101 (144)
T cd03221 28 RIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST-VKIGYFEQLSGGE-KMRLALAKLLLE---NPNLLLLDEPTNHL 101 (144)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe-EEEEEEccCCHHH-HHHHHHHHHHhc---CCCEEEEeCCccCC
Confidence 89999999999999999998875321 0111110 0000100 11111 345556666644 89999999998876
No 250
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=97.70 E-value=5.8e-05 Score=70.44 Aligned_cols=36 Identities=19% Similarity=0.158 Sum_probs=28.2
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeecccccc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELES 91 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s 91 (321)
++.|.||||||||++|+.+++++. +++.++..++..
T Consensus 4 liil~G~pGSGKSTla~~L~~~~~-~~~~l~~D~~r~ 39 (300)
T PHA02530 4 IILTVGVPGSGKSTWAREFAAKNP-KAVNVNRDDLRQ 39 (300)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHCC-CCEEEeccHHHH
Confidence 467899999999999999999993 345566655543
No 251
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.70 E-value=3.4e-05 Score=73.40 Aligned_cols=25 Identities=12% Similarity=0.022 Sum_probs=22.4
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGI 79 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~ 79 (321)
..+|.||||||||++.++++....-
T Consensus 113 ~~~i~g~~g~GKttl~~~l~~~~~~ 137 (270)
T TIGR02858 113 NTLIISPPQCGKTTLLRDLARILST 137 (270)
T ss_pred EEEEEcCCCCCHHHHHHHHhCccCC
Confidence 4589999999999999999998764
No 252
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.70 E-value=0.00011 Score=63.64 Aligned_cols=73 Identities=15% Similarity=0.181 Sum_probs=45.3
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCC--ceEEeecccccc--------ccCCCc---HHHHHHHHHHHHhhhhhcCCceEE
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGI--EPVIMSAGELES--------ERAGEP---GKLIRERYRTASQVVQNQGKMSCL 121 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~--~~i~vs~~eL~s--------~~~GEs---er~IR~~F~~A~~~~~~~gaPcIL 121 (321)
+++|.||+|||||+|.++++..... --+.+.+.++.. ..+|-. ..--+++..-|+.++. .|.+|
T Consensus 28 ~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~---~p~il 104 (163)
T cd03216 28 VHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALAR---NARLL 104 (163)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhc---CCCEE
Confidence 8999999999999999999976532 112232222211 001100 0001445566666643 89999
Q ss_pred EeecccccC
Q 020787 122 MINDIDAGL 130 (321)
Q Consensus 122 FIDEIDAg~ 130 (321)
++||--++.
T Consensus 105 llDEP~~~L 113 (163)
T cd03216 105 ILDEPTAAL 113 (163)
T ss_pred EEECCCcCC
Confidence 999998876
No 253
>PHA02774 E1; Provisional
Probab=97.67 E-value=0.00013 Score=76.53 Aligned_cols=95 Identities=17% Similarity=0.175 Sum_probs=58.4
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEE-eeccccccccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeecccccCCCC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVI-MSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRF 133 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~-vs~~eL~s~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~~r~ 133 (321)
-++||||||||||++|-++++.++-..+. |+..+ +-| +..+. .--|++|||+-.-+
T Consensus 436 civ~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~~s--~Fw-----------Lqpl~-------d~ki~vlDD~t~~~--- 492 (613)
T PHA02774 436 CLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNSKS--HFW-----------LQPLA-------DAKIALLDDATHPC--- 492 (613)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEEEECcc--ccc-----------cchhc-------cCCEEEEecCcchH---
Confidence 58899999999999999999999755554 54321 112 22222 22588999981111
Q ss_pred CCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeC
Q 020787 134 GNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGN 181 (321)
Q Consensus 134 ~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTN 181 (321)
..-+...|-+++||- -|.++--....-....-|+|+|||
T Consensus 493 --------w~y~d~~Lrn~LdG~-~v~lD~Khk~~~q~k~pPlIITSN 531 (613)
T PHA02774 493 --------WDYIDTYLRNALDGN-PVSIDCKHKAPVQIKCPPLLITSN 531 (613)
T ss_pred --------HHHHHHHHHHHcCCC-cceeeecccCcccccCCCEEEecC
Confidence 123444578888864 355543111111133579999999
No 254
>PRK03839 putative kinase; Provisional
Probab=97.67 E-value=2.5e-05 Score=67.95 Aligned_cols=30 Identities=30% Similarity=0.479 Sum_probs=27.0
Q ss_pred hccccCCCCcHHHHHHHHHHHcCCceEEee
Q 020787 56 LCIWGGKGQGKSFQTELIFQAMGIEPVIMS 85 (321)
Q Consensus 56 LgL~GPPGcGKTllaravA~e~g~~~i~vs 85 (321)
+.|.||||||||++++++|++++++++.+.
T Consensus 3 I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 3 IAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 578899999999999999999999987653
No 255
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.66 E-value=2.2e-05 Score=80.98 Aligned_cols=30 Identities=23% Similarity=0.339 Sum_probs=28.1
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEe
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIM 84 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~v 84 (321)
||+|+||||||||+.++++|+++|..++.-
T Consensus 47 iLlLtGP~G~GKtttv~~La~elg~~v~Ew 76 (519)
T PF03215_consen 47 ILLLTGPSGCGKTTTVKVLAKELGFEVQEW 76 (519)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCeeEEe
Confidence 999999999999999999999999977763
No 256
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=97.66 E-value=8.1e-05 Score=63.89 Aligned_cols=66 Identities=15% Similarity=0.203 Sum_probs=42.5
Q ss_pred hccccCCCCcHHHHHHHHHHHc---CCceEEeeccccccc---cCC----CcHHHHHHHHHHHHhhhhhcCCceEEEee
Q 020787 56 LCIWGGKGQGKSFQTELIFQAM---GIEPVIMSAGELESE---RAG----EPGKLIRERYRTASQVVQNQGKMSCLMIN 124 (321)
Q Consensus 56 LgL~GPPGcGKTllaravA~e~---g~~~i~vs~~eL~s~---~~G----Eser~IR~~F~~A~~~~~~~gaPcILFID 124 (321)
+.|.|+||+|||++|++++..+ |...+.+++-++-.. ..| +..+.++.+...|+...+ +-+++++|
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r~~l~~~~~~~~~~~~~~~~~~~~~a~~l~~---~G~~VIid 77 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVRHGLNKDLGFSREDREENIRRIAEVAKLLAD---AGLIVIAA 77 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHHHhhhhccCCCcchHHHHHHHHHHHHHHHHh---CCCEEEEc
Confidence 6789999999999999999998 777777766444321 112 223455555555555533 33555544
No 257
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.66 E-value=0.00072 Score=66.20 Aligned_cols=132 Identities=12% Similarity=0.142 Sum_probs=81.6
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEE--e--------------ecccc--ccccCCC--cHHHHHHHHHHHHhhhhh
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVI--M--------------SAGEL--ESERAGE--PGKLIRERYRTASQVVQN 114 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~--v--------------s~~eL--~s~~~GE--ser~IR~~F~~A~~~~~~ 114 (321)
-++++||+|+||+.+|+++|+.+-+.--. - +-+++ +.+..|. +-..||++-+.+.... .
T Consensus 26 A~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~I~id~iR~l~~~~~~~~-~ 104 (325)
T PRK06871 26 ALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKDIGVDQVREINEKVSQHA-Q 104 (325)
T ss_pred eEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCCCCCHHHHHHHHHHHhhcc-c
Confidence 67899999999999999999988662100 0 01122 1111121 3456787766554332 1
Q ss_pred cCCceEEEeecccccCCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccccCCCCC
Q 020787 115 QGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDG 194 (321)
Q Consensus 115 ~gaPcILFIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpALlRpG 194 (321)
.|.--|++||+.|..-. .-...||..+..| .+++.+|.+|+.++.|.|.++=
T Consensus 105 ~g~~KV~iI~~a~~m~~------------~AaNaLLKtLEEP--------------p~~~~fiL~t~~~~~llpTI~S-- 156 (325)
T PRK06871 105 QGGNKVVYIQGAERLTE------------AAANALLKTLEEP--------------RPNTYFLLQADLSAALLPTIYS-- 156 (325)
T ss_pred cCCceEEEEechhhhCH------------HHHHHHHHHhcCC--------------CCCeEEEEEECChHhCchHHHh--
Confidence 45667999999998632 1222455555422 4678888889999999999654
Q ss_pred CCcceec-CCCHHHHHHHHHHH
Q 020787 195 RMEKFYW-QPNLEDILNIVHRM 215 (321)
Q Consensus 195 RfDr~i~-~Pd~~~R~~Il~~~ 215 (321)
|--.+.+ .|+.++-.+.|...
T Consensus 157 RC~~~~~~~~~~~~~~~~L~~~ 178 (325)
T PRK06871 157 RCQTWLIHPPEEQQALDWLQAQ 178 (325)
T ss_pred hceEEeCCCCCHHHHHHHHHHH
Confidence 4444434 35666666666543
No 258
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.65 E-value=6.4e-05 Score=67.39 Aligned_cols=67 Identities=12% Similarity=0.192 Sum_probs=40.4
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCc----eEEeec-ccccc---------ccCCCcHHHHHHHHHHHHhhhhhcCCceE
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIE----PVIMSA-GELES---------ERAGEPGKLIRERYRTASQVVQNQGKMSC 120 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~----~i~vs~-~eL~s---------~~~GEser~IR~~F~~A~~~~~~~gaPcI 120 (321)
+++|.||+|||||+++++++..+..+ .+.+.- .|+.. ..+|.......+..+.|. +..|.+
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aL-----r~~pd~ 77 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKRSLINQREVGLDTLSFENALKAAL-----RQDPDV 77 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCccceeeecccCCCccCHHHHHHHHh-----cCCcCE
Confidence 35789999999999999999888632 232222 12221 112332222333333333 337999
Q ss_pred EEeecc
Q 020787 121 LMINDI 126 (321)
Q Consensus 121 LFIDEI 126 (321)
|++||+
T Consensus 78 ii~gEi 83 (198)
T cd01131 78 ILVGEM 83 (198)
T ss_pred EEEcCC
Confidence 999998
No 259
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=97.65 E-value=0.00021 Score=63.68 Aligned_cols=73 Identities=12% Similarity=0.162 Sum_probs=43.3
Q ss_pred HhccccCCCCcHHHHHHHHHH-----HcCCceE-----Eee----------ccccccccCCCcHHHHHHHHHHHHhhhhh
Q 020787 55 SLCIWGGKGQGKSFQTELIFQ-----AMGIEPV-----IMS----------AGELESERAGEPGKLIRERYRTASQVVQN 114 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~-----e~g~~~i-----~vs----------~~eL~s~~~GEser~IR~~F~~A~~~~~~ 114 (321)
+++|.||+|+|||++.+.++. ++|+.+- .+. ..+....+.+.-..-.+++..-+..
T Consensus 30 ~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~~~~~~~~~~~~~lg~~~~l~~~~s~fs~g~~~~~~i~~~---- 105 (200)
T cd03280 30 VLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGSSLPVFENIFADIGDEQSIEQSLSTFSSHMKNIARILQH---- 105 (200)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccccccCcCccEEEEecCchhhhhcCcchHHHHHHHHHHHHHh----
Confidence 689999999999999999883 3353211 111 1112222222223333444443332
Q ss_pred cCCceEEEeecccccCC
Q 020787 115 QGKMSCLMINDIDAGLG 131 (321)
Q Consensus 115 ~gaPcILFIDEIDAg~~ 131 (321)
...|.++++||.-++..
T Consensus 106 ~~~p~llllDEp~~glD 122 (200)
T cd03280 106 ADPDSLVLLDELGSGTD 122 (200)
T ss_pred CCCCcEEEEcCCCCCCC
Confidence 23799999999988763
No 260
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=97.64 E-value=0.00015 Score=61.89 Aligned_cols=32 Identities=22% Similarity=0.404 Sum_probs=26.5
Q ss_pred hccccCCCCcHHHHHHHHHHHcCCceEEeecccc
Q 020787 56 LCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGEL 89 (321)
Q Consensus 56 LgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL 89 (321)
+.|.||||||||++++.+++.++..++ ++-++
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v--~~D~~ 32 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFI--EGDDL 32 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEE--eCccc
Confidence 358899999999999999999997665 44554
No 261
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=97.61 E-value=2e-05 Score=70.08 Aligned_cols=72 Identities=21% Similarity=0.273 Sum_probs=43.5
Q ss_pred hccccCCCCcHHHHHHHHHHHcCCceEEeec-cccccccC-CCcHHHHHHHHHHHHhhhhhcCCceEEEeeccccc
Q 020787 56 LCIWGGKGQGKSFQTELIFQAMGIEPVIMSA-GELESERA-GEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAG 129 (321)
Q Consensus 56 LgL~GPPGcGKTllaravA~e~g~~~i~vs~-~eL~s~~~-GEser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg 129 (321)
+.++||||||||.+.+.++... ..+...+. .++...|. +......+-+........+ ......++|||+=..
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~~~~~~~-~~~~~~liiDE~~~~ 74 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLKDR-LVVTVISPTIELYTEWLPDPPSKSVRTVDSFLKALVK-PKSYDTLIIDEAQLL 74 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHHhc-cccccccccceeccccccccCCccccEEeEhhhcccc-cCcCCEEEEeccccC
Confidence 3589999999999999999998 33333333 66666665 3333333322221211110 013679999997553
No 262
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.61 E-value=3.8e-05 Score=68.80 Aligned_cols=50 Identities=18% Similarity=0.219 Sum_probs=39.4
Q ss_pred hccccCCCCcHHHHHHHHHHHcCCceEEeeccccccccCCCcHHHHHHHHHHHHhh
Q 020787 56 LCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQV 111 (321)
Q Consensus 56 LgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~ 111 (321)
+.|-||||.|||++|+.+|++ ..+.+++.++++....-+. .++-.++...
T Consensus 3 iiilG~pGaGK~T~A~~La~~--~~i~hlstgd~~r~~~~~~----t~lg~~~k~~ 52 (178)
T COG0563 3 ILILGPPGAGKSTLAKKLAKK--LGLPHLDTGDILRAAIAER----TELGEEIKKY 52 (178)
T ss_pred EEEECCCCCCHHHHHHHHHHH--hCCcEEcHhHHhHhhhccC----ChHHHHHHHH
Confidence 568899999999999999999 7778899898887655444 3455556554
No 263
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=97.60 E-value=3.7e-05 Score=63.29 Aligned_cols=31 Identities=26% Similarity=0.365 Sum_probs=28.2
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEee
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMS 85 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs 85 (321)
|..|.||||||||++|+.+|+++|++++...
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 3578999999999999999999999988776
No 264
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=97.59 E-value=0.00019 Score=78.50 Aligned_cols=130 Identities=12% Similarity=0.116 Sum_probs=67.3
Q ss_pred HhccccCCCCcHHHHHHHHHHHcC-------CceEEeecccccc-ccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeecc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMG-------IEPVIMSAGELES-ERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDI 126 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g-------~~~i~vs~~eL~s-~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDEI 126 (321)
-++|+|+||||||.+|+++++-.. .++..+....... .-...++.. .++-.+. ...--+++||||
T Consensus 494 hVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~vgLTa~~~~~d~~tG~~~-----le~GaLv--lAdgGtL~IDEi 566 (915)
T PTZ00111 494 NVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSVGLTASIKFNESDNGRAM-----IQPGAVV--LANGGVCCIDEL 566 (915)
T ss_pred eEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCccccccchhhhcccccCccc-----ccCCcEE--EcCCCeEEecch
Confidence 468999999999999999998532 1222211111110 000000100 0010011 112348899999
Q ss_pred cccCCCCCCCccchhhHHHHHHHHhhcCCCCc-cccCccccccCCCCCccEEEeeCCCC-------------CccccCCC
Q 020787 127 DAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTR-VSIGQDWRESDITNRIPIIFTGNDFS-------------TIYAPLIR 192 (321)
Q Consensus 127 DAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~-vql~g~~~~~~~~~~V~VIaaTNrp~-------------~LDpALlR 192 (321)
|..-. .....|++.|...+. +.-.|.-. ....++-||||+|-.. .|+|+|+=
T Consensus 567 dkms~------------~~Q~aLlEaMEqqtIsI~KaGi~~--tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLS 632 (915)
T PTZ00111 567 DKCHN------------ESRLSLYEVMEQQTVTIAKAGIVA--TLKAETAILASCNPINSRYNKNKAVIENINISPSLFT 632 (915)
T ss_pred hhCCH------------HHHHHHHHHHhCCEEEEecCCcce--ecCCCeEEEEEcCCcccccCcccCcccccCCChHHhh
Confidence 99642 223345555542210 11112111 1135788999999642 35677777
Q ss_pred CCCCcceecC---CCHHH
Q 020787 193 DGRMEKFYWQ---PNLED 207 (321)
Q Consensus 193 pGRfDr~i~~---Pd~~~ 207 (321)
|||-.+.+ |+++.
T Consensus 633 --RFDLIf~l~D~~d~~~ 648 (915)
T PTZ00111 633 --RFDLIYLVLDHIDQDT 648 (915)
T ss_pred --hhcEEEEecCCCChHH
Confidence 99986653 66543
No 265
>PRK07261 topology modulation protein; Provisional
Probab=97.58 E-value=0.00014 Score=63.81 Aligned_cols=42 Identities=17% Similarity=0.180 Sum_probs=33.2
Q ss_pred hccccCCCCcHHHHHHHHHHHcCCceEEeeccccccccCCCc
Q 020787 56 LCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEP 97 (321)
Q Consensus 56 LgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~~~GEs 97 (321)
++|.||||+|||++|+.++..++++.+.+..-.....|...+
T Consensus 3 i~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~~~~~~ 44 (171)
T PRK07261 3 IAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPNWQERD 44 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccccccCC
Confidence 578999999999999999999999988876544444455444
No 266
>PRK14526 adenylate kinase; Provisional
Probab=97.57 E-value=5.2e-05 Score=69.46 Aligned_cols=35 Identities=26% Similarity=0.407 Sum_probs=29.4
Q ss_pred hccccCCCCcHHHHHHHHHHHcCCceEEeeccccccc
Q 020787 56 LCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESE 92 (321)
Q Consensus 56 LgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~ 92 (321)
++|+||||||||++|+.+|+++++. .++.++++..
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~~~~--~is~G~llr~ 37 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNELNYY--HISTGDLFRE 37 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCc--eeecChHHHH
Confidence 5789999999999999999999854 5667777654
No 267
>PRK09862 putative ATP-dependent protease; Provisional
Probab=97.57 E-value=6.7e-05 Score=77.35 Aligned_cols=23 Identities=26% Similarity=0.390 Sum_probs=21.1
Q ss_pred HhccccCCCCcHHHHHHHHHHHc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM 77 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~ 77 (321)
.++|.||||||||++++.++..+
T Consensus 212 ~llliG~~GsGKTtLak~L~gll 234 (506)
T PRK09862 212 NLLLIGPPGTGKTMLASRINGLL 234 (506)
T ss_pred EEEEECCCCCcHHHHHHHHhccC
Confidence 79999999999999999998754
No 268
>PRK14531 adenylate kinase; Provisional
Probab=97.56 E-value=4.9e-05 Score=66.87 Aligned_cols=35 Identities=31% Similarity=0.477 Sum_probs=28.7
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeecccccc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELES 91 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s 91 (321)
.+++.||||+|||++|+.+|++.|+.. ++.++++.
T Consensus 4 ~i~i~G~pGsGKsT~~~~la~~~g~~~--is~gd~lr 38 (183)
T PRK14531 4 RLLFLGPPGAGKGTQAARLCAAHGLRH--LSTGDLLR 38 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCe--EecccHHH
Confidence 467899999999999999999998765 45566653
No 269
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.56 E-value=0.00018 Score=72.76 Aligned_cols=75 Identities=20% Similarity=0.218 Sum_probs=49.5
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCc------eEEeec--------------cccccccCCCcHHH-HH---HHHHHHHh
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIE------PVIMSA--------------GELESERAGEPGKL-IR---ERYRTASQ 110 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~------~i~vs~--------------~eL~s~~~GEser~-IR---~~F~~A~~ 110 (321)
..+|.||||||||++++++++....+ ++.+.+ ++++..-.++|... ++ .+.+.|..
T Consensus 170 ~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~Ae~ 249 (415)
T TIGR00767 170 RGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEKAKR 249 (415)
T ss_pred EEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHHHHH
Confidence 57899999999999999999985433 333432 12333445555543 22 33344433
Q ss_pred hhhhcCCceEEEeecccccC
Q 020787 111 VVQNQGKMSCLMINDIDAGL 130 (321)
Q Consensus 111 ~~~~~gaPcILFIDEIDAg~ 130 (321)
.. ..|+-.+||||||...+
T Consensus 250 ~~-~~GkdVVLlIDEitR~a 268 (415)
T TIGR00767 250 LV-EHKKDVVILLDSITRLA 268 (415)
T ss_pred HH-HcCCCeEEEEEChhHHH
Confidence 32 46899999999999754
No 270
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=97.55 E-value=0.0001 Score=67.68 Aligned_cols=68 Identities=15% Similarity=0.202 Sum_probs=42.7
Q ss_pred hccccCCCCcHHHHHHHHHHHc---CCceEEeecccc---ccccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeec
Q 020787 56 LCIWGGKGQGKSFQTELIFQAM---GIEPVIMSAGEL---ESERAGEPGKLIRERYRTASQVVQNQGKMSCLMIND 125 (321)
Q Consensus 56 LgL~GPPGcGKTllaravA~e~---g~~~i~vs~~eL---~s~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDE 125 (321)
+.|.|+||+|||++|+++++.+ +...+.++..++ +..|....++.+|+....+.+.+- .+..++++|.
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~lr~~~~~~~~~~e~~~~~~~~~~i~~~l--~~~~~VI~D~ 75 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLIRESFPVWKEKYEEFIRDSTLYLIKTAL--KNKYSVIVDD 75 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHHHHHhHHhhHHhHHHHHHHHHHHHHHHH--hCCCeEEEec
Confidence 5689999999999999999987 566777766444 222433445666665544332221 1233456565
No 271
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.55 E-value=0.00014 Score=72.25 Aligned_cols=90 Identities=17% Similarity=0.183 Sum_probs=54.6
Q ss_pred HHHhhhhhhccCccccchhhhhHhccccCCCCcHHHHHHHHHHHc---CCceEEeeccccccc------cCCC-------
Q 020787 33 QKVTRSFEYLQGDYYIAPVFMASLCIWGGKGQGKSFQTELIFQAM---GIEPVIMSAGELESE------RAGE------- 96 (321)
Q Consensus 33 ~~~~~~~~~~~~~~~~~p~f~~iLgL~GPPGcGKTllaravA~e~---g~~~i~vs~~eL~s~------~~GE------- 96 (321)
.+....|+.+-||=..+- .+.+|+||||+|||+++..+|... +-..+.+++.|-.+. -.|-
T Consensus 65 ~TGi~eLD~vLgGGi~~G---slvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l 141 (372)
T cd01121 65 PTGIEELDRVLGGGLVPG---SVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYL 141 (372)
T ss_pred ccCCHHHHHhhcCCccCC---eEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEE
Confidence 345555666665522222 267999999999999999888654 345666776442221 0111
Q ss_pred -cHHHHHHHHHHHHhhhhhcCCceEEEeecccccC
Q 020787 97 -PGKLIRERYRTASQVVQNQGKMSCLMINDIDAGL 130 (321)
Q Consensus 97 -ser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~ 130 (321)
++..+.++.+... ..+|.+|+||+|-...
T Consensus 142 ~~e~~le~I~~~i~-----~~~~~lVVIDSIq~l~ 171 (372)
T cd01121 142 LAETNLEDILASIE-----ELKPDLVIIDSIQTVY 171 (372)
T ss_pred EccCcHHHHHHHHH-----hcCCcEEEEcchHHhh
Confidence 1122333443333 3489999999999875
No 272
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=97.55 E-value=2.7e-05 Score=66.00 Aligned_cols=34 Identities=35% Similarity=0.497 Sum_probs=29.2
Q ss_pred cccCCCCcHHHHHHHHHHHcCCceEEeecccccccc
Q 020787 58 IWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESER 93 (321)
Q Consensus 58 L~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~~ 93 (321)
|.||||+|||++|+.+|++.| +++++.++++.+.
T Consensus 1 i~G~PgsGK~t~~~~la~~~~--~~~is~~~llr~~ 34 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYG--LVHISVGDLLREE 34 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHT--SEEEEHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhcC--cceechHHHHHHH
Confidence 579999999999999999996 5678888887654
No 273
>PRK08233 hypothetical protein; Provisional
Probab=97.53 E-value=0.00021 Score=61.20 Aligned_cols=30 Identities=20% Similarity=0.232 Sum_probs=24.9
Q ss_pred HhccccCCCCcHHHHHHHHHHHcC-CceEEe
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMG-IEPVIM 84 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g-~~~i~v 84 (321)
+++|-||||+|||++|+.++.+++ +..+.+
T Consensus 5 iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~ 35 (182)
T PRK08233 5 IITIAAVSGGGKTTLTERLTHKLKNSKALYF 35 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhhCCCCceEEE
Confidence 578899999999999999999996 444444
No 274
>PRK13946 shikimate kinase; Provisional
Probab=97.53 E-value=9.8e-05 Score=65.13 Aligned_cols=37 Identities=19% Similarity=0.172 Sum_probs=31.3
Q ss_pred chhhhhHhccccCCCCcHHHHHHHHHHHcCCceEEee
Q 020787 49 APVFMASLCIWGGKGQGKSFQTELIFQAMGIEPVIMS 85 (321)
Q Consensus 49 ~p~f~~iLgL~GPPGcGKTllaravA~e~g~~~i~vs 85 (321)
||.+-..+.|.|+||||||++++.+|+.+|++|+...
T Consensus 6 ~~~~~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D 42 (184)
T PRK13946 6 AALGKRTVVLVGLMGAGKSTVGRRLATMLGLPFLDAD 42 (184)
T ss_pred hccCCCeEEEECCCCCCHHHHHHHHHHHcCCCeECcC
Confidence 3444456889999999999999999999999988655
No 275
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.52 E-value=6.2e-05 Score=65.21 Aligned_cols=35 Identities=31% Similarity=0.531 Sum_probs=28.8
Q ss_pred hccccCCCCcHHHHHHHHHHHcCCceEEeeccccccc
Q 020787 56 LCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESE 92 (321)
Q Consensus 56 LgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~ 92 (321)
++|.||||+|||++|+.+|+++|+.. ++.++++.+
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~--i~~~~l~~~ 36 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPH--ISTGDLLRE 36 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeE--EECcHHHHH
Confidence 57899999999999999999998654 556666644
No 276
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.52 E-value=0.00015 Score=65.18 Aligned_cols=33 Identities=18% Similarity=0.230 Sum_probs=26.3
Q ss_pred HhccccCCCCcHHHHHHHHHHHc---CCceEEeecc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM---GIEPVIMSAG 87 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~---g~~~i~vs~~ 87 (321)
+..|+||||+|||.+|..+|.+. |-..+.++.-
T Consensus 25 i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 25 ITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 67899999999999999888643 6666666654
No 277
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=97.52 E-value=5.9e-05 Score=74.28 Aligned_cols=54 Identities=26% Similarity=0.273 Sum_probs=46.7
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCC--ceEEeeccccccccCCCcHHHHHHHHHHHH
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGI--EPVIMSAGELESERAGEPGKLIRERYRTAS 109 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~--~~i~vs~~eL~s~~~GEser~IR~~F~~A~ 109 (321)
-++|-||||+|||-||-+++.|+|. +|..|.+||++|.-+-..|-+ -+-||+|.
T Consensus 66 avLlaGppgtGKTAlAlaisqELG~kvPFcpmvgSEvyS~EvKKTEvL-menfRRaI 121 (456)
T KOG1942|consen 66 AVLLAGPPGTGKTALALAISQELGPKVPFCPMVGSEVYSNEVKKTEVL-MENFRRAI 121 (456)
T ss_pred EEEEecCCCCchhHHHHHHHHHhCCCCCcccccchhhhhhhhhHHHHH-HHHHHHHh
Confidence 6899999999999999999999985 999999999999877666644 46788875
No 278
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.49 E-value=6.9e-05 Score=64.16 Aligned_cols=36 Identities=31% Similarity=0.323 Sum_probs=25.0
Q ss_pred hccccCCCCcHHHHHHHHHHHcCCceEEeeccccccc
Q 020787 56 LCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESE 92 (321)
Q Consensus 56 LgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~ 92 (321)
..|.|+||||||+|++++++. |.+.+.=.+-++...
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g~~~v~E~ar~~~~~ 37 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-GYPVVPEYAREIIEE 37 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T-EEE--TTHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc-CCeEEeecHHHHHHH
Confidence 468999999999999999999 888775555555543
No 279
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=97.49 E-value=0.00015 Score=62.26 Aligned_cols=30 Identities=30% Similarity=0.346 Sum_probs=26.8
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEe
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIM 84 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~v 84 (321)
.+.|.|+||||||++++.+|+++|++++..
T Consensus 4 ~i~~~G~~GsGKst~~~~la~~lg~~~~d~ 33 (171)
T PRK03731 4 PLFLVGARGCGKTTVGMALAQALGYRFVDT 33 (171)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEc
Confidence 467889999999999999999999998754
No 280
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.49 E-value=0.00021 Score=60.78 Aligned_cols=73 Identities=21% Similarity=0.351 Sum_probs=44.2
Q ss_pred hHhccccCCCCcHHHHHHHHHHHcCCc--eEEeecccccc-------ccCC----CcHHHHHHHHHHHHhhhhhcCCceE
Q 020787 54 ASLCIWGGKGQGKSFQTELIFQAMGIE--PVIMSAGELES-------ERAG----EPGKLIRERYRTASQVVQNQGKMSC 120 (321)
Q Consensus 54 ~iLgL~GPPGcGKTllaravA~e~g~~--~i~vs~~eL~s-------~~~G----Eser~IR~~F~~A~~~~~~~gaPcI 120 (321)
++.+|.||+|+|||++.++++...... -+.+.+.++.+ ..++ =|.- -+++..-|+..+. .|.+
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G-~~~r~~l~~~l~~---~~~i 101 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGG-QRQRVALARALLL---NPDL 101 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEeeCCHH-HHHHHHHHHHHhc---CCCE
Confidence 389999999999999999999876432 12222222211 0011 0000 1223344555533 7999
Q ss_pred EEeecccccC
Q 020787 121 LMINDIDAGL 130 (321)
Q Consensus 121 LFIDEIDAg~ 130 (321)
+++||..++.
T Consensus 102 ~ilDEp~~~l 111 (157)
T cd00267 102 LLLDEPTSGL 111 (157)
T ss_pred EEEeCCCcCC
Confidence 9999999977
No 281
>PLN02200 adenylate kinase family protein
Probab=97.49 E-value=5.7e-05 Score=70.01 Aligned_cols=37 Identities=35% Similarity=0.540 Sum_probs=32.8
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeecccccccc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESER 93 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~~ 93 (321)
+++|.||||||||++|+.+|+++|+ .+++.++|+.+.
T Consensus 45 ii~I~G~PGSGKsT~a~~La~~~g~--~his~gdllR~~ 81 (234)
T PLN02200 45 ITFVLGGPGSGKGTQCEKIVETFGF--KHLSAGDLLRRE 81 (234)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC--eEEEccHHHHHH
Confidence 7899999999999999999999985 578889988653
No 282
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.49 E-value=0.00014 Score=65.01 Aligned_cols=72 Identities=14% Similarity=0.135 Sum_probs=45.9
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCC--ceEEeecccc--ccccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeecccccC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGI--EPVIMSAGEL--ESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGL 130 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~--~~i~vs~~eL--~s~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~ 130 (321)
+++|.||+|+|||+|.++++..... --|.+.+..+ ......=|. --|++..-|+..+. .|.++++||--++.
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LSg-Gq~qrv~laral~~---~p~lllLDEPts~L 102 (177)
T cd03222 27 VIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSG-GELQRVAIAAALLR---NATFYLFDEPSAYL 102 (177)
T ss_pred EEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCCH-HHHHHHHHHHHHhc---CCCEEEEECCcccC
Confidence 8999999999999999999986532 1122222111 001100011 11566777777754 89999999998876
No 283
>PRK06547 hypothetical protein; Provisional
Probab=97.48 E-value=0.00012 Score=65.12 Aligned_cols=41 Identities=22% Similarity=0.251 Sum_probs=34.0
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeeccccccccCCCc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEP 97 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~~~GEs 97 (321)
+++|.||||||||++|+.+++.+++.++. ..++...|.|-+
T Consensus 17 ~i~i~G~~GsGKTt~a~~l~~~~~~~~~~--~d~~~~~~~~~~ 57 (172)
T PRK06547 17 TVLIDGRSGSGKTTLAGALAARTGFQLVH--LDDLYPGWHGLA 57 (172)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeec--ccceecccccCC
Confidence 78899999999999999999999887665 466777776644
No 284
>PRK00625 shikimate kinase; Provisional
Probab=97.48 E-value=9e-05 Score=65.95 Aligned_cols=30 Identities=10% Similarity=0.060 Sum_probs=27.6
Q ss_pred hccccCCCCcHHHHHHHHHHHcCCceEEee
Q 020787 56 LCIWGGKGQGKSFQTELIFQAMGIEPVIMS 85 (321)
Q Consensus 56 LgL~GPPGcGKTllaravA~e~g~~~i~vs 85 (321)
+.|.|+||||||++++.+|+++|++++.++
T Consensus 3 I~LiG~pGsGKTT~~k~La~~l~~~~id~D 32 (173)
T PRK00625 3 IFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence 468899999999999999999999998875
No 285
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.48 E-value=0.0018 Score=63.36 Aligned_cols=153 Identities=16% Similarity=0.205 Sum_probs=91.0
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceE---------------Eeeccccc--ccc-CCC--cHHHHHHHHHHHHhhhhh
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPV---------------IMSAGELE--SER-AGE--PGKLIRERYRTASQVVQN 114 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i---------------~vs~~eL~--s~~-~GE--ser~IR~~F~~A~~~~~~ 114 (321)
-++++||+|+||+.+|+++|+.+-+.=- .-+-+|+. .+- .|. +=..||++=+.+.... .
T Consensus 27 A~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~vdqiR~l~~~~~~~~-~ 105 (319)
T PRK06090 27 ALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKEGKSITVEQIRQCNRLAQESS-Q 105 (319)
T ss_pred eEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcCCCcCCHHHHHHHHHHHhhCc-c
Confidence 6789999999999999999988754210 00112221 110 011 2245676655543322 1
Q ss_pred cCCceEEEeecccccCCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccccCCCCC
Q 020787 115 QGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDG 194 (321)
Q Consensus 115 ~gaPcILFIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpALlRpG 194 (321)
.+.--|++||+.|..-. + -...||..+..| .+++.+|.+|+.++.|-|.++=
T Consensus 106 ~~~~kV~iI~~ae~m~~-----------~-AaNaLLKtLEEP--------------p~~t~fiL~t~~~~~lLpTI~S-- 157 (319)
T PRK06090 106 LNGYRLFVIEPADAMNE-----------S-ASNALLKTLEEP--------------APNCLFLLVTHNQKRLLPTIVS-- 157 (319)
T ss_pred cCCceEEEecchhhhCH-----------H-HHHHHHHHhcCC--------------CCCeEEEEEECChhhChHHHHh--
Confidence 34557999999998631 1 223455555522 4578888888999999998654
Q ss_pred CCcceec-CCCHHHHHHHHHHHhhcCCCC-HHHHHHhhhCCCCCcchh
Q 020787 195 RMEKFYW-QPNLEDILNIVHRMYEKDGIT-KDEVGSIVKTFPNQALDF 240 (321)
Q Consensus 195 RfDr~i~-~Pd~~~R~~Il~~~~~~~~l~-~~dl~~L~d~f~gq~idf 240 (321)
|-=++.+ .|+.++-.+.|... +++ ...+.+++.+-|+..+++
T Consensus 158 RCq~~~~~~~~~~~~~~~L~~~----~~~~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 158 RCQQWVVTPPSTAQAMQWLKGQ----GITVPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred cceeEeCCCCCHHHHHHHHHHc----CCchHHHHHHHcCCCHHHHHHH
Confidence 5555444 37877777766532 233 234555665555555544
No 286
>PRK13949 shikimate kinase; Provisional
Probab=97.47 E-value=0.00016 Score=63.62 Aligned_cols=31 Identities=16% Similarity=0.315 Sum_probs=28.3
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEee
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMS 85 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs 85 (321)
-+.|.||||+|||++++.+|+.++++++...
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~~~~id~D 33 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGLSFIDLD 33 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence 3678999999999999999999999988866
No 287
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.47 E-value=0.00015 Score=67.39 Aligned_cols=70 Identities=17% Similarity=0.202 Sum_probs=43.6
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeecc----------ccccccCCCcHHHHHHHHHHHHhhhhhcCCceEEEee
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAG----------ELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMIN 124 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~----------eL~s~~~GEser~IR~~F~~A~~~~~~~gaPcILFID 124 (321)
.++|||+||+|||++|+.++.+ .-++....+ ++.+-....+-..+-+.+..+... ......|+||
T Consensus 14 ~~liyG~~G~GKtt~a~~~~~~--~~~~~~d~~~~~l~g~~~~~v~~~d~~~~~~~~~d~l~~~~~~---~~~ydtVVID 88 (220)
T TIGR01618 14 MYLIYGKPGTGKTSTIKYLPGK--TLVLSFDMSSKVLIGDENVDIADHDDMPPIQAMVEFYVMQNIQ---AVKYDNIVID 88 (220)
T ss_pred EEEEECCCCCCHHHHHHhcCCC--CEEEeccccchhccCCCCCceeecCCCCCHHHHHHHHHHHHhc---cccCCEEEEe
Confidence 4789999999999999998632 333333331 122222334445555666544332 2367899999
Q ss_pred ccccc
Q 020787 125 DIDAG 129 (321)
Q Consensus 125 EIDAg 129 (321)
.|+.+
T Consensus 89 sI~~l 93 (220)
T TIGR01618 89 NISAL 93 (220)
T ss_pred cHHHH
Confidence 99983
No 288
>PRK00279 adk adenylate kinase; Reviewed
Probab=97.46 E-value=0.00016 Score=65.09 Aligned_cols=35 Identities=31% Similarity=0.539 Sum_probs=28.5
Q ss_pred hccccCCCCcHHHHHHHHHHHcCCceEEeeccccccc
Q 020787 56 LCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESE 92 (321)
Q Consensus 56 LgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~ 92 (321)
++++||||+|||++|+.+|+++|+.. ++.++++.+
T Consensus 3 I~v~G~pGsGKsT~a~~la~~~~~~~--is~~dl~r~ 37 (215)
T PRK00279 3 LILLGPPGAGKGTQAKFIAEKYGIPH--ISTGDMLRA 37 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcE--EECCccHHH
Confidence 57899999999999999999999654 555666543
No 289
>PRK02496 adk adenylate kinase; Provisional
Probab=97.46 E-value=8.1e-05 Score=64.94 Aligned_cols=33 Identities=27% Similarity=0.456 Sum_probs=27.4
Q ss_pred hccccCCCCcHHHHHHHHHHHcCCceEEeeccccc
Q 020787 56 LCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELE 90 (321)
Q Consensus 56 LgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~ 90 (321)
++|.||||||||++|+.+|+.+|+.. ++.++++
T Consensus 4 i~i~G~pGsGKst~a~~la~~~~~~~--i~~~~~~ 36 (184)
T PRK02496 4 LIFLGPPGAGKGTQAVVLAEHLHIPH--ISTGDIL 36 (184)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcE--EEhHHHH
Confidence 67899999999999999999998654 4555555
No 290
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=97.46 E-value=0.00028 Score=64.66 Aligned_cols=149 Identities=16% Similarity=0.107 Sum_probs=75.8
Q ss_pred HhccccCCCCcHHHHHHHHHHH--cCCc-----eEEeeccc--------ccccc--------CCCcHHHHHHHHHHHHhh
Q 020787 55 SLCIWGGKGQGKSFQTELIFQA--MGIE-----PVIMSAGE--------LESER--------AGEPGKLIRERYRTASQV 111 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e--~g~~-----~i~vs~~e--------L~s~~--------~GEser~IR~~F~~A~~~ 111 (321)
+++|||++|+|||.+|+.++.. ..-. ++.++... |.... .......+.+...++.
T Consensus 21 ~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L-- 98 (287)
T PF00931_consen 21 VVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSISDPKDIEELQDQLRELL-- 98 (287)
T ss_dssp EEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STSSCCSSHHHHHHHHHHHH--
T ss_pred EEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhh--
Confidence 7899999999999999999988 3332 33333311 11010 1111222222222222
Q ss_pred hhhcCCceEEEeecccccCCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccccCC
Q 020787 112 VQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLI 191 (321)
Q Consensus 112 ~~~~gaPcILFIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpALl 191 (321)
++++|+|+||+++... .+. .+...+- .. ..+..||+||....... .+-
T Consensus 99 ---~~~~~LlVlDdv~~~~-------------~~~-~l~~~~~------------~~--~~~~kilvTTR~~~v~~-~~~ 146 (287)
T PF00931_consen 99 ---KDKRCLLVLDDVWDEE-------------DLE-ELREPLP------------SF--SSGSKILVTTRDRSVAG-SLG 146 (287)
T ss_dssp ---CCTSEEEEEEEE-SHH-------------HH--------H------------CH--HSS-EEEEEESCGGGGT-THH
T ss_pred ---ccccceeeeeeecccc-------------ccc-ccccccc------------cc--ccccccccccccccccc-ccc
Confidence 3469999999987532 111 1111110 00 23678999987654322 111
Q ss_pred CCCCCcceecCC--CHHHHHHHHHHHhhcCC-----CCHHHHHHhhhCCCCCcchh
Q 020787 192 RDGRMEKFYWQP--NLEDILNIVHRMYEKDG-----ITKDEVGSIVKTFPNQALDF 240 (321)
Q Consensus 192 RpGRfDr~i~~P--d~~~R~~Il~~~~~~~~-----l~~~dl~~L~d~f~gq~idf 240 (321)
.-+..|.++ +.++-.++|+....... -..+...+++..+.|-|+-.
T Consensus 147 ---~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal 199 (287)
T PF00931_consen 147 ---GTDKVIELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLAL 199 (287)
T ss_dssp ---SCEEEEECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHH
T ss_pred ---ccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 114455553 77777788876643222 12345567788888877644
No 291
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=97.44 E-value=0.00013 Score=70.82 Aligned_cols=78 Identities=21% Similarity=0.310 Sum_probs=53.2
Q ss_pred cchhhhhHhccccCCCCcHHHHHHHHHHHcCCceEEeeccccccccCC-Cc-----H--HHHHHHHHHHHhhhhhcCCce
Q 020787 48 IAPVFMASLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAG-EP-----G--KLIRERYRTASQVVQNQGKMS 119 (321)
Q Consensus 48 ~~p~f~~iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~~~G-Es-----e--r~IR~~F~~A~~~~~~~gaPc 119 (321)
+.|-|.....|.|+||||||+|+++++...+.+++.-.+-+......| +. . ..++.-+..-.+.+ +.++.
T Consensus 157 ~~~~~~~~~~~~G~~~~gkstl~~~l~~~~~~~~v~E~~R~~~~~~~~~~~~l~~~d~~~i~~g~~~~~~~~~--~~a~~ 234 (325)
T TIGR01526 157 VRPFFVKTVAILGGESTGKSTLVNKLAAVFNTTSAWEYAREYVEEKLGGDEALQYSDYAQIALGQQRYIDYAV--RHAHK 234 (325)
T ss_pred HHhhcCcEEEEECCCCCCHHHHHHHHHHhhCCCEEeehhHHHHHHhcCCCcccCHHHHHHHHHHHHHHHHHHH--hhcCC
Confidence 445556688999999999999999999999999988777766654442 21 1 34444333322221 33678
Q ss_pred EEEeecccc
Q 020787 120 CLMINDIDA 128 (321)
Q Consensus 120 ILFIDEIDA 128 (321)
|||+|- ++
T Consensus 235 iif~D~-~~ 242 (325)
T TIGR01526 235 IAFIDT-DF 242 (325)
T ss_pred eEEEcC-Ch
Confidence 999884 44
No 292
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=97.44 E-value=0.00016 Score=72.38 Aligned_cols=46 Identities=20% Similarity=0.221 Sum_probs=37.2
Q ss_pred cccchhhhh----HhccccCCCCcHHHHHHHHHHHcCCceEEeecccccc
Q 020787 46 YYIAPVFMA----SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELES 91 (321)
Q Consensus 46 ~~~~p~f~~----iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s 91 (321)
-||||.+-. .++|.|++|||||+|++++|...|...+.--+-+...
T Consensus 208 ~~i~~~vr~~~~~~IvI~G~~gsGKTTL~~~La~~~g~~~v~E~~R~~~~ 257 (399)
T PRK08099 208 EYIPTEVRPFFVRTVAILGGESSGKSTLVNKLANIFNTTSAWEYGREYVF 257 (399)
T ss_pred HhcCHHHhhCCCcEEEEEcCCCCCHHHHHHHHHHHhCCCeeeeccHHHHH
Confidence 477865544 8899999999999999999999999877655555553
No 293
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.43 E-value=0.00025 Score=71.00 Aligned_cols=74 Identities=20% Similarity=0.244 Sum_probs=47.3
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCc-----eEEee---------------ccccccccCCCcHHH-HH---HHHHHHHh
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIE-----PVIMS---------------AGELESERAGEPGKL-IR---ERYRTASQ 110 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~-----~i~vs---------------~~eL~s~~~GEser~-IR---~~F~~A~~ 110 (321)
..+|.||||||||++++.+|+.+..+ ++.+- .+++...+.-++... ++ ...+.|..
T Consensus 135 R~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~~~~~~~v~~~~~~~Ae~ 214 (380)
T PRK12608 135 RGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRPPDEHIRVAELVLERAKR 214 (380)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCCHHHHHHHHHHHHHHHHH
Confidence 56899999999999999999987552 23311 123443333333332 22 22344443
Q ss_pred hhhhcCCceEEEeeccccc
Q 020787 111 VVQNQGKMSCLMINDIDAG 129 (321)
Q Consensus 111 ~~~~~gaPcILFIDEIDAg 129 (321)
.. .+|+..+|++||+...
T Consensus 215 f~-~~GkdVVLvlDsltr~ 232 (380)
T PRK12608 215 LV-EQGKDVVILLDSLTRL 232 (380)
T ss_pred HH-HcCCCEEEEEeCcHHH
Confidence 33 4799999999999974
No 294
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.43 E-value=0.00046 Score=59.88 Aligned_cols=24 Identities=29% Similarity=0.457 Sum_probs=22.2
Q ss_pred HhccccCCCCcHHHHHHHHHHHcC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMG 78 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g 78 (321)
+++|.||+|+|||+|.++++....
T Consensus 30 ~~~l~G~nGsGKstLl~~i~G~~~ 53 (171)
T cd03228 30 KVAIVGPSGSGKSTLLKLLLRLYD 53 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC
Confidence 899999999999999999998753
No 295
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.43 E-value=0.0011 Score=64.70 Aligned_cols=142 Identities=14% Similarity=0.139 Sum_probs=84.3
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCc-eE---------------Eeeccccc--cccCC---CcHHHHHHHHHHHHhhhh
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIE-PV---------------IMSAGELE--SERAG---EPGKLIRERYRTASQVVQ 113 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~-~i---------------~vs~~eL~--s~~~G---Eser~IR~~F~~A~~~~~ 113 (321)
-++++||+|+||+.+|+++|..+-+. .- .-+-+|+. .+-.+ =+=..||++=+.+....
T Consensus 26 A~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~~- 104 (334)
T PRK07993 26 ALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLGVDAVREVTEKLYEHA- 104 (334)
T ss_pred EEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccCCHHHHHHHHHHHhhcc-
Confidence 57899999999999999999988652 10 00012221 00000 12336777666654332
Q ss_pred hcCCceEEEeecccccCCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccccCCCC
Q 020787 114 NQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRD 193 (321)
Q Consensus 114 ~~gaPcILFIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpALlRp 193 (321)
..|.--|++||+.|+.-. + -...||..+..| ..++.+|.+|+.|+.|.|.++=
T Consensus 105 ~~g~~kV~iI~~ae~m~~-----------~-AaNaLLKtLEEP--------------p~~t~fiL~t~~~~~lLpTIrS- 157 (334)
T PRK07993 105 RLGGAKVVWLPDAALLTD-----------A-AANALLKTLEEP--------------PENTWFFLACREPARLLATLRS- 157 (334)
T ss_pred ccCCceEEEEcchHhhCH-----------H-HHHHHHHHhcCC--------------CCCeEEEEEECChhhChHHHHh-
Confidence 246678999999998631 1 223466555522 4578888888999999998764
Q ss_pred CCCcceec-CCCHHHHHHHHHHHhhcCCCCHHHHHH
Q 020787 194 GRMEKFYW-QPNLEDILNIVHRMYEKDGITKDEVGS 228 (321)
Q Consensus 194 GRfDr~i~-~Pd~~~R~~Il~~~~~~~~l~~~dl~~ 228 (321)
|--...+ .|+.++-.+-|.. ..+++.++...
T Consensus 158 -RCq~~~~~~~~~~~~~~~L~~---~~~~~~~~a~~ 189 (334)
T PRK07993 158 -RCRLHYLAPPPEQYALTWLSR---EVTMSQDALLA 189 (334)
T ss_pred -ccccccCCCCCHHHHHHHHHH---ccCCCHHHHHH
Confidence 4333333 3566665555532 22455544333
No 296
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=97.42 E-value=0.00066 Score=58.98 Aligned_cols=73 Identities=16% Similarity=0.133 Sum_probs=45.2
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCc----------eEEeeccc--cccc---------cCCCcHHHHHHHHHHHHhhhh
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIE----------PVIMSAGE--LESE---------RAGEPGKLIRERYRTASQVVQ 113 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~----------~i~vs~~e--L~s~---------~~GEser~IR~~F~~A~~~~~ 113 (321)
+++|.||+|||||+|+++++...... -+..-..+ +.+. +..+=-.--+++..-|+..+.
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~LS~G~~~rv~laral~~ 108 (166)
T cd03223 29 RLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYPWDDVLSGGEQQRLAFARLLLH 108 (166)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccccccHHHHhhccCCCCCCHHHHHHHHHHHHHHc
Confidence 89999999999999999999875321 11111111 1100 011101112456666776644
Q ss_pred hcCCceEEEeecccccC
Q 020787 114 NQGKMSCLMINDIDAGL 130 (321)
Q Consensus 114 ~~gaPcILFIDEIDAg~ 130 (321)
.|.+|++||-.++.
T Consensus 109 ---~p~~lllDEPt~~L 122 (166)
T cd03223 109 ---KPKFVFLDEATSAL 122 (166)
T ss_pred ---CCCEEEEECCcccc
Confidence 89999999998876
No 297
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.41 E-value=0.00066 Score=66.48 Aligned_cols=93 Identities=13% Similarity=0.178 Sum_probs=53.5
Q ss_pred HHHHHhhhhhhccC--ccccchhhhhHhccccCCCCcHHHHHHHHHHHc---CCceEEeecccccc--------------
Q 020787 31 YRQKVTRSFEYLQG--DYYIAPVFMASLCIWGGKGQGKSFQTELIFQAM---GIEPVIMSAGELES-------------- 91 (321)
Q Consensus 31 ~~~~~~~~~~~~~~--~~~~~p~f~~iLgL~GPPGcGKTllaravA~e~---g~~~i~vs~~eL~s-------------- 91 (321)
...+..-.++.+-| || |+- .+..|+||||||||+||-.++.+. |-..+.++..+-.+
T Consensus 35 ~i~TGi~~LD~~Lg~GGl--p~G--~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l 110 (321)
T TIGR02012 35 TISTGSLSLDLALGVGGL--PRG--RIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNL 110 (321)
T ss_pred eecCCCHHHHHHhcCCCC--cCC--eEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHe
Confidence 33445555655543 33 221 266799999999999987655443 44555554433221
Q ss_pred --ccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeecccccCCC
Q 020787 92 --ERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGR 132 (321)
Q Consensus 92 --~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~~r 132 (321)
...-..|.. +..+.+.++ ++++.+|+||=|-+..++
T Consensus 111 ~v~~p~~~eq~----l~~~~~li~-~~~~~lIVIDSv~al~~~ 148 (321)
T TIGR02012 111 LVSQPDTGEQA----LEIAETLVR-SGAVDIIVVDSVAALVPK 148 (321)
T ss_pred EEecCCCHHHH----HHHHHHHhh-ccCCcEEEEcchhhhccc
Confidence 111112222 333333333 578999999999998875
No 298
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=97.41 E-value=0.0011 Score=61.71 Aligned_cols=135 Identities=17% Similarity=0.141 Sum_probs=75.6
Q ss_pred ccccCCCCcHHHHHHHHHHHcCCceEEeeccccccccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeecccccCCCCCCC
Q 020787 57 CIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNT 136 (321)
Q Consensus 57 gL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~~r~~~t 136 (321)
.++||.|||||-.++++|+.+|..+++.+.++-.+ .+.+.++|.=+.+. =|-+.|||++.+-.. .
T Consensus 36 ~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~------~~~l~ril~G~~~~------GaW~cfdefnrl~~~---v 100 (231)
T PF12774_consen 36 ALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMD------YQSLSRILKGLAQS------GAWLCFDEFNRLSEE---V 100 (231)
T ss_dssp EEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-------HHHHHHHHHHHHHH------T-EEEEETCCCSSHH---H
T ss_pred CCcCCCCCCchhHHHHHHHHhCCeEEEeccccccc------HHHHHHHHHHHhhc------CchhhhhhhhhhhHH---H
Confidence 47999999999999999999999999999998886 68889999877653 577789999975321 1
Q ss_pred ccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeC----CCCCccccCCCCCCCcceec--CCCHHHHHH
Q 020787 137 QMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGN----DFSTIYAPLIRDGRMEKFYW--QPNLEDILN 210 (321)
Q Consensus 137 ~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTN----rp~~LDpALlRpGRfDr~i~--~Pd~~~R~~ 210 (321)
-+ +-.+.+......+-.+...+.+.|. .-...+.+-|.+|.| ....|+..|+. +=|-+. .||.+--.+
T Consensus 101 LS-~i~~~i~~i~~al~~~~~~~~~~g~--~i~l~~~~~iFiT~np~y~gr~~LP~nLk~---lFRpvam~~PD~~~I~e 174 (231)
T PF12774_consen 101 LS-VISQQIQSIQDALRAKQKSFTLEGQ--EIKLNPNCGIFITMNPGYAGRSELPENLKA---LFRPVAMMVPDLSLIAE 174 (231)
T ss_dssp HH-HHHHHHHHHHHHHHCTSSEEEETTC--EEE--TT-EEEEEE-B-CCCC--S-HHHCT---TEEEEE--S--HHHHHH
T ss_pred HH-HHHHHHHHHHHhhcccccccccCCC--EEEEccceeEEEeeccccCCcccCCHhHHH---HhheeEEeCCCHHHHHH
Confidence 11 1122233222223334444555441 122234566677777 23445555432 112222 488776555
Q ss_pred HH
Q 020787 211 IV 212 (321)
Q Consensus 211 Il 212 (321)
|+
T Consensus 175 i~ 176 (231)
T PF12774_consen 175 IL 176 (231)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 299
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.41 E-value=0.00085 Score=65.85 Aligned_cols=96 Identities=13% Similarity=0.162 Sum_probs=56.7
Q ss_pred HHHHHHhhhhhhccC-ccccchhhhhHhccccCCCCcHHHHHHHHHHH---cCCceEEeeccccccc-------------
Q 020787 30 DYRQKVTRSFEYLQG-DYYIAPVFMASLCIWGGKGQGKSFQTELIFQA---MGIEPVIMSAGELESE------------- 92 (321)
Q Consensus 30 ~~~~~~~~~~~~~~~-~~~~~p~f~~iLgL~GPPGcGKTllaravA~e---~g~~~i~vs~~eL~s~------------- 92 (321)
+.-++....++.+-| | -+|+- .+..||||||||||++|-.++.+ .|-..+-++..+-.+.
T Consensus 34 ~~isTGi~~LD~~Lg~G-Glp~G--~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l 110 (325)
T cd00983 34 EVIPTGSLSLDIALGIG-GYPKG--RIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNL 110 (325)
T ss_pred ceecCCCHHHHHHhcCC-CccCC--eEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHh
Confidence 344556666766644 2 23332 26679999999999999876643 3556666655331111
Q ss_pred ---cCCCcHHHHHHHHHHHHhhhhhcCCceEEEeecccccCCCC
Q 020787 93 ---RAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRF 133 (321)
Q Consensus 93 ---~~GEser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~~r~ 133 (321)
..-..|. .+..+...++ .+++.+|+||=|-|+.++.
T Consensus 111 ~v~~p~~~eq----~l~i~~~li~-s~~~~lIVIDSvaal~~~~ 149 (325)
T cd00983 111 LISQPDTGEQ----ALEIADSLVR-SGAVDLIVVDSVAALVPKA 149 (325)
T ss_pred eecCCCCHHH----HHHHHHHHHh-ccCCCEEEEcchHhhcccc
Confidence 1111222 2333333333 5689999999999988763
No 300
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.40 E-value=0.00043 Score=61.84 Aligned_cols=34 Identities=15% Similarity=0.210 Sum_probs=26.3
Q ss_pred hHhccccCCCCcHHHHHHHHHHHc---CCceEEeecc
Q 020787 54 ASLCIWGGKGQGKSFQTELIFQAM---GIEPVIMSAG 87 (321)
Q Consensus 54 ~iLgL~GPPGcGKTllaravA~e~---g~~~i~vs~~ 87 (321)
.+..|+||||||||++|-.+|.++ |-+.+.++..
T Consensus 20 ~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e 56 (218)
T cd01394 20 TVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTE 56 (218)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 377899999999999999988765 4455556543
No 301
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.39 E-value=0.0013 Score=64.06 Aligned_cols=186 Identities=17% Similarity=0.231 Sum_probs=97.3
Q ss_pred HhccccCCCCcHHHHHHHHHHHcC---------CceEEeeccc--------------cccccCCCcHHHHHHHHHHHHhh
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMG---------IEPVIMSAGE--------------LESERAGEPGKLIRERYRTASQV 111 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g---------~~~i~vs~~e--------------L~s~~~GEser~IR~~F~~A~~~ 111 (321)
-|+|+|+++.|||++++..+.... ++++.|.++. |-.++- +...+.+....+...
T Consensus 63 ~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~--~~~~~~~~~~~~~~l 140 (302)
T PF05621_consen 63 NLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYR--PRDRVAKLEQQVLRL 140 (302)
T ss_pred ceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccC--CCCCHHHHHHHHHHH
Confidence 899999999999999999886543 3556665532 111110 001111222223222
Q ss_pred hhhcCCceEEEeecccccC-CCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCc----
Q 020787 112 VQNQGKMSCLMINDIDAGL-GRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTI---- 186 (321)
Q Consensus 112 ~~~~gaPcILFIDEIDAg~-~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~L---- 186 (321)
.+ .-.+-+|+||||..++ |.. ...+.+.+.|=.+.+ .=++|||+.+. ++++
T Consensus 141 lr-~~~vrmLIIDE~H~lLaGs~------~~qr~~Ln~LK~L~N----------------eL~ipiV~vGt-~~A~~al~ 196 (302)
T PF05621_consen 141 LR-RLGVRMLIIDEFHNLLAGSY------RKQREFLNALKFLGN----------------ELQIPIVGVGT-REAYRALR 196 (302)
T ss_pred HH-HcCCcEEEeechHHHhcccH------HHHHHHHHHHHHHhh----------------ccCCCeEEecc-HHHHHHhc
Confidence 22 3378999999999854 321 112334344433322 12688888653 2222
Q ss_pred -cccCCCCCCCccee---cCCCHHHHHHHHHHHhhcC------CCCHHHHHHhhhCCCCCcchhhHHHHHhHhHHHHHHH
Q 020787 187 -YAPLIRDGRMEKFY---WQPNLEDILNIVHRMYEKD------GITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKW 256 (321)
Q Consensus 187 -DpALlRpGRfDr~i---~~Pd~~~R~~Il~~~~~~~------~l~~~dl~~L~d~f~gq~idf~gAlra~~~d~~~~~~ 256 (321)
||-|-+ ||+.+. |-++.+=+. .|..+-+.. ++...++...+=.-++-.++-.. ++...++..+
T Consensus 197 ~D~QLa~--RF~~~~Lp~W~~d~ef~~-LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~----~ll~~aA~~A 269 (302)
T PF05621_consen 197 TDPQLAS--RFEPFELPRWELDEEFRR-LLASFERALPLRKPSNLASPELARRIHERSEGLIGELS----RLLNAAAIAA 269 (302)
T ss_pred cCHHHHh--ccCCccCCCCCCCcHHHH-HHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHH----HHHHHHHHHH
Confidence 333433 888754 556665544 444433322 35555554333333333333332 2333333344
Q ss_pred HHhccCcccccchhhcccC
Q 020787 257 IDDIGGVENLGNKLLKRRK 275 (321)
Q Consensus 257 i~~~~g~~~~~~~lv~~~~ 275 (321)
|. . |.|.|..+.++.-.
T Consensus 270 I~-s-G~E~It~~~l~~~~ 286 (302)
T PF05621_consen 270 IR-S-GEERITREILDKID 286 (302)
T ss_pred Hh-c-CCceecHHHHhhCC
Confidence 43 2 88888888776643
No 302
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=97.39 E-value=0.00079 Score=59.57 Aligned_cols=71 Identities=14% Similarity=0.091 Sum_probs=42.1
Q ss_pred hccccCCCCcHHHHHHHHH-----HHcCCce--------------EEeeccccccccCCCcHHHHHHHHHHHHhhhhhcC
Q 020787 56 LCIWGGKGQGKSFQTELIF-----QAMGIEP--------------VIMSAGELESERAGEPGKLIRERYRTASQVVQNQG 116 (321)
Q Consensus 56 LgL~GPPGcGKTllaravA-----~e~g~~~--------------i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~~g 116 (321)
+.|.||.|.|||++.|.++ .++|... ..+...+-.++..+.=.+-+++ +..+... ..
T Consensus 2 ~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a~~~~~~~~d~il~~~~~~d~~~~~~s~fs~~~~~-l~~~l~~---~~ 77 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPAESAELPVFDRIFTRIGASDSLAQGLSTFMVEMKE-TANILKN---AT 77 (185)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHHHhCCCeeehheEecccceEEEEeCCCCchhccccHHHHHHHH-HHHHHHh---CC
Confidence 5799999999999999998 4566522 1122222222222222233333 2222222 34
Q ss_pred CceEEEeecccccC
Q 020787 117 KMSCLMINDIDAGL 130 (321)
Q Consensus 117 aPcILFIDEIDAg~ 130 (321)
.|+++++||+-++.
T Consensus 78 ~~~llllDEp~~g~ 91 (185)
T smart00534 78 ENSLVLLDELGRGT 91 (185)
T ss_pred CCeEEEEecCCCCC
Confidence 79999999998876
No 303
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=97.39 E-value=0.00026 Score=68.85 Aligned_cols=74 Identities=16% Similarity=0.245 Sum_probs=46.6
Q ss_pred cchhhhh-------HhccccCCCCcHHHHHHHHHHHcCC----ceEEeec-cccc---------cccCCCcHHHHHHHHH
Q 020787 48 IAPVFMA-------SLCIWGGKGQGKSFQTELIFQAMGI----EPVIMSA-GELE---------SERAGEPGKLIRERYR 106 (321)
Q Consensus 48 ~~p~f~~-------iLgL~GPPGcGKTllaravA~e~g~----~~i~vs~-~eL~---------s~~~GEser~IR~~F~ 106 (321)
.||.|.. ++++.||+|+|||++.+++...+.- .++.+.- .|+. ...+|.......+..+
T Consensus 110 ~~~~l~~~~~~~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~evg~~~~~~~~~l~ 189 (343)
T TIGR01420 110 LPPVLRELAERPRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQREVGLDTLSFANALR 189 (343)
T ss_pred CCHHHHHHHhhcCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCccceEEccccCCCCcCHHHHHH
Confidence 4666665 7789999999999999999987652 3333321 2322 1223433223333444
Q ss_pred HHHhhhhhcCCceEEEeecc
Q 020787 107 TASQVVQNQGKMSCLMINDI 126 (321)
Q Consensus 107 ~A~~~~~~~gaPcILFIDEI 126 (321)
.|. +..|.+|++|||
T Consensus 190 ~~l-----r~~pd~i~vgEi 204 (343)
T TIGR01420 190 AAL-----REDPDVILIGEM 204 (343)
T ss_pred Hhh-----ccCCCEEEEeCC
Confidence 443 348999999999
No 304
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=97.38 E-value=0.00037 Score=60.31 Aligned_cols=107 Identities=21% Similarity=0.143 Sum_probs=58.1
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCce---------------EEeeccccccccCCCcHHHHHHHHHHHHhhhhh-cCCc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEP---------------VIMSAGELESERAGEPGKLIRERYRTASQVVQN-QGKM 118 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~---------------i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~-~gaP 118 (321)
...|.||.|+|||.+.++++--++..- -.++ ..++-...+=|.- .+++..-|+..+.. .+.|
T Consensus 23 ~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~i~~~~~lS~G-~~~~~~la~~L~~~~~~~~ 100 (162)
T cd03227 23 LTIITGPNGSGKSTILDAIGLALGGAQSATRRRSGVKAGCIVAAVS-AELIFTRLQLSGG-EKELSALALILALASLKPR 100 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcchhhhccCcccCCCcceeeE-EEEehheeecccc-HHHHHHHHHHHHhcCCCCC
Confidence 789999999999999999764333221 1111 0000000011110 23344444444321 1479
Q ss_pred eEEEeecccccCCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCcc
Q 020787 119 SCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIY 187 (321)
Q Consensus 119 cILFIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LD 187 (321)
++++|||+.++.... +.+.+...+...+. . +..+|++|.+++...
T Consensus 101 ~llllDEp~~gld~~-------~~~~l~~~l~~~~~----------------~-~~~vii~TH~~~~~~ 145 (162)
T cd03227 101 PLYILDEIDRGLDPR-------DGQALAEAILEHLV----------------K-GAQVIVITHLPELAE 145 (162)
T ss_pred CEEEEeCCCCCCCHH-------HHHHHHHHHHHHHh----------------c-CCEEEEEcCCHHHHH
Confidence 999999999987321 12334434443322 1 456888888887654
No 305
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=97.38 E-value=0.0015 Score=66.20 Aligned_cols=142 Identities=18% Similarity=0.201 Sum_probs=78.3
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEe----------------------------------------eccccccccC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIM----------------------------------------SAGELESERA 94 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~v----------------------------------------s~~eL~s~~~ 94 (321)
..+|-|++|+|||+++||+|.-+.---++. --+.-++..+
T Consensus 40 gvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvv 119 (423)
T COG1239 40 GALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDPEEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLV 119 (423)
T ss_pred eeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCChhhhhHHHHhhccccccccccceecceecCCCccchhhhc
Confidence 567789999999999999998775432222 1112222223
Q ss_pred CC--cHHHHHH---HHHHHHhhhhhcCCceEEEeecccccCCCCCCCccchhhHHHHHHHHhhcC-CCCccccCcccccc
Q 020787 95 GE--PGKLIRE---RYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSD-NPTRVSIGQDWRES 168 (321)
Q Consensus 95 GE--ser~IR~---~F~~A~~~~~~~gaPcILFIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD-~~~~vql~g~~~~~ 168 (321)
|. .+|.+++ .|.--. ++ +..=-||+||||--+.. + ++..||+.+- |.+.|+..|. +.
T Consensus 120 GslDi~ka~~~g~~af~PGl-La--~AnRGIlYvDEvnlL~d-----------~-lvd~LLd~aaeG~n~vereGi--si 182 (423)
T COG1239 120 GSLDIEKALEEGPKAFQPGL-LA--RANRGILYVDEVNLLDD-----------H-LVDALLDVAAEGVNDVEREGI--SI 182 (423)
T ss_pred cccCHHHHHhcCccccCCcc-hh--hccCCEEEEeccccccH-----------H-HHHHHHHHHHhCCceeeeCce--ee
Confidence 32 3444442 221110 00 11235899999976532 2 3345666553 4456777772 11
Q ss_pred CCCCCccEEEeeCCCCCccccCCCCCCCcc---eec---CCCHHHHHHHHHHHhh
Q 020787 169 DITNRIPIIFTGNDFSTIYAPLIRDGRMEK---FYW---QPNLEDILNIVHRMYE 217 (321)
Q Consensus 169 ~~~~~V~VIaaTNrp~~LDpALlRpGRfDr---~i~---~Pd~~~R~~Il~~~~~ 217 (321)
..--++.+|+|+| |+ -.=+||==+|| .+- +.+.++|.+|...-+.
T Consensus 183 ~hpa~fvligTmN-PE---eGeLrpqLlDRfg~~v~~~~~~~~~~rv~Ii~r~~~ 233 (423)
T COG1239 183 RHPARFLLIGTMN-PE---EGELRPQLLDRFGLEVDTHYPLDLEERVEIIRRRLA 233 (423)
T ss_pred ccCccEEEEeecC-cc---ccccchhhHhhhcceeeccCCCCHHHHHHHHHHHHH
Confidence 1123677777888 44 23344444454 443 3588999999975443
No 306
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.38 E-value=0.00052 Score=62.47 Aligned_cols=27 Identities=26% Similarity=0.106 Sum_probs=23.0
Q ss_pred hHhccccCCCCcHHHHHHHHH-----HHcCCc
Q 020787 54 ASLCIWGGKGQGKSFQTELIF-----QAMGIE 80 (321)
Q Consensus 54 ~iLgL~GPPGcGKTllaravA-----~e~g~~ 80 (321)
++++|.||.|+|||++.++++ .++|+.
T Consensus 30 ~~~~l~G~n~~GKstll~~i~~~~~la~~G~~ 61 (204)
T cd03282 30 RFHIITGPNMSGKSTYLKQIALLAIMAQIGCF 61 (204)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHHHcCCC
Confidence 479999999999999999987 566753
No 307
>PRK01184 hypothetical protein; Provisional
Probab=97.38 E-value=0.0001 Score=64.22 Aligned_cols=35 Identities=34% Similarity=0.511 Sum_probs=28.2
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeeccccccc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESE 92 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~ 92 (321)
+++|.||||+|||++++ +++++|++++.. ++++.+
T Consensus 3 ~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~--~d~lr~ 37 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSK-IAREMGIPVVVM--GDVIRE 37 (184)
T ss_pred EEEEECCCCCCHHHHHH-HHHHcCCcEEEh--hHHHHH
Confidence 67899999999999998 689999777544 566643
No 308
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=97.37 E-value=0.00036 Score=60.68 Aligned_cols=72 Identities=24% Similarity=0.315 Sum_probs=44.1
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCC--ceEEeecccccc----------ccCCC--------------cHHHHHHHHHHH
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGI--EPVIMSAGELES----------ERAGE--------------PGKLIRERYRTA 108 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~--~~i~vs~~eL~s----------~~~GE--------------ser~IR~~F~~A 108 (321)
+++|.||+|||||+|.++++..... --|.+.+.++.+ .|+.+ |. =-+++..-|
T Consensus 30 ~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~lLS~-G~~qrv~la 108 (173)
T cd03246 30 SLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENILSG-GQRQRLGLA 108 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEEECCCCccccCcHHHHCcCH-HHHHHHHHH
Confidence 8899999999999999999986532 112222211110 00000 00 012455566
Q ss_pred HhhhhhcCCceEEEeecccccC
Q 020787 109 SQVVQNQGKMSCLMINDIDAGL 130 (321)
Q Consensus 109 ~~~~~~~gaPcILFIDEIDAg~ 130 (321)
+..+. .|.+|++||--++.
T Consensus 109 ~al~~---~p~~lllDEPt~~L 127 (173)
T cd03246 109 RALYG---NPRILVLDEPNSHL 127 (173)
T ss_pred HHHhc---CCCEEEEECCcccc
Confidence 66643 89999999998876
No 309
>PRK14530 adenylate kinase; Provisional
Probab=97.37 E-value=0.00012 Score=65.86 Aligned_cols=38 Identities=24% Similarity=0.457 Sum_probs=29.8
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeeccccccccC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERA 94 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~~~ 94 (321)
.++|.||||+|||++|+.+|+.+|+++| +.++++....
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~~~i--~~g~~lr~~~ 42 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGVEHV--TTGDALRANK 42 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEE--eccHHHHHhc
Confidence 3578999999999999999999997655 4466654433
No 310
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.35 E-value=0.00022 Score=74.44 Aligned_cols=31 Identities=26% Similarity=0.359 Sum_probs=28.9
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEee
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMS 85 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs 85 (321)
||+|.||+|||||+.++.+|+++|..++-=+
T Consensus 112 iLLltGPsGcGKSTtvkvLskelg~~~~Ew~ 142 (634)
T KOG1970|consen 112 ILLLTGPSGCGKSTTVKVLSKELGYQLIEWS 142 (634)
T ss_pred EEEEeCCCCCCchhHHHHHHHhhCceeeeec
Confidence 9999999999999999999999999887655
No 311
>PRK04040 adenylate kinase; Provisional
Probab=97.34 E-value=0.00026 Score=63.56 Aligned_cols=34 Identities=15% Similarity=0.256 Sum_probs=27.5
Q ss_pred HhccccCCCCcHHHHHHHHHHHc--CCceEEeeccccc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM--GIEPVIMSAGELE 90 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~--g~~~i~vs~~eL~ 90 (321)
+.+|+|+||||||++++.++.++ +..+ ++.++++
T Consensus 4 ~i~v~G~pG~GKtt~~~~l~~~l~~~~~~--~~~g~~~ 39 (188)
T PRK04040 4 VVVVTGVPGVGKTTVLNKALEKLKEDYKI--VNFGDVM 39 (188)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHhccCCeE--EecchHH
Confidence 56899999999999999999999 5554 4556553
No 312
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.34 E-value=0.00069 Score=59.94 Aligned_cols=22 Identities=18% Similarity=0.317 Sum_probs=20.7
Q ss_pred HhccccCCCCcHHHHHHHHHHH
Q 020787 55 SLCIWGGKGQGKSFQTELIFQA 76 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e 76 (321)
+++|-||+|||||+|.++++..
T Consensus 35 ~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 35 LTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 8999999999999999999963
No 313
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=97.32 E-value=0.00019 Score=74.55 Aligned_cols=132 Identities=16% Similarity=0.225 Sum_probs=84.1
Q ss_pred hhhhccCccccchhhhh-------------HhccccCCCCcHHHHHHHHHHHcC---CceEEeecccc---------ccc
Q 020787 38 SFEYLQGDYYIAPVFMA-------------SLCIWGGKGQGKSFQTELIFQAMG---IEPVIMSAGEL---------ESE 92 (321)
Q Consensus 38 ~~~~~~~~~~~~p~f~~-------------iLgL~GPPGcGKTllaravA~e~g---~~~i~vs~~eL---------~s~ 92 (321)
+|++|.| -+|.+++ -++|+|.+||||.++|+++=+... =+||.++++-| +.-
T Consensus 243 ~f~~Iig---~S~~m~~~~~~akr~A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiPe~LlESELFGy 319 (560)
T COG3829 243 TFDDIIG---ESPAMLRVLELAKRIAKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIPETLLESELFGY 319 (560)
T ss_pred chhhhcc---CCHHHHHHHHHHHhhcCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCCHHHHHHHHhCc
Confidence 5666665 5777776 789999999999999999976654 59999999543 211
Q ss_pred ----cCCCcHHHHHHHHHHHHhhhhhcCCceEEEeecccccCCCCCCCccchhhHHHHHHHHhhcCCCCccccCcccccc
Q 020787 93 ----RAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRES 168 (321)
Q Consensus 93 ----~~GEser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~ 168 (321)
+.|-+..==.-+|+.|- ---||+|||-..- -.+++.||-.+..-....++|. .
T Consensus 320 e~GAFTGA~~~GK~GlfE~A~--------gGTLFLDEIgemp------------l~LQaKLLRVLQEkei~rvG~t---~ 376 (560)
T COG3829 320 EKGAFTGASKGGKPGLFELAN--------GGTLFLDEIGEMP------------LPLQAKLLRVLQEKEIERVGGT---K 376 (560)
T ss_pred CCccccccccCCCCcceeecc--------CCeEEehhhccCC------------HHHHHHHHHHHhhceEEecCCC---C
Confidence 11111100012333331 2358999997642 2466677766654444555552 2
Q ss_pred CCCCCccEEEeeCCCCCccccCCCCCCCcc
Q 020787 169 DITNRIPIIFTGNDFSTIYAPLIRDGRMEK 198 (321)
Q Consensus 169 ~~~~~V~VIaaTNrp~~LDpALlRpGRfDr 198 (321)
.....|=||+|||+.= --++..|||=+
T Consensus 377 ~~~vDVRIIAATN~nL---~~~i~~G~FRe 403 (560)
T COG3829 377 PIPVDVRIIAATNRNL---EKMIAEGTFRE 403 (560)
T ss_pred ceeeEEEEEeccCcCH---HHHHhcCcchh
Confidence 2234688999999842 24788998865
No 314
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=97.32 E-value=0.00064 Score=59.47 Aligned_cols=73 Identities=19% Similarity=0.231 Sum_probs=44.8
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCC--ceEEeecccc---------------------------ccccCCCcHHHHHHHH
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGI--EPVIMSAGEL---------------------------ESERAGEPGKLIRERY 105 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~--~~i~vs~~eL---------------------------~s~~~GEser~IR~~F 105 (321)
+++|.||+|+|||++.++++..... --|.+.+.++ .++...+=..--+++.
T Consensus 27 ~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G~~qrl 106 (180)
T cd03214 27 IVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSGGERQRV 106 (180)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHHHHHHH
Confidence 8999999999999999999986532 1122222221 1111111111123445
Q ss_pred HHHHhhhhhcCCceEEEeecccccC
Q 020787 106 RTASQVVQNQGKMSCLMINDIDAGL 130 (321)
Q Consensus 106 ~~A~~~~~~~gaPcILFIDEIDAg~ 130 (321)
.-|+..+. .|.+|++||--++.
T Consensus 107 ~laral~~---~p~llllDEP~~~L 128 (180)
T cd03214 107 LLARALAQ---EPPILLLDEPTSHL 128 (180)
T ss_pred HHHHHHhc---CCCEEEEeCCccCC
Confidence 55665543 89999999988876
No 315
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=97.31 E-value=0.00069 Score=74.10 Aligned_cols=108 Identities=19% Similarity=0.194 Sum_probs=69.0
Q ss_pred HhccccCCCCcHHHHHHHHHHHc---CCceEEeeccc------ccc---ccCCCcHHHHHHHHHHHHhhhhhcCCceEEE
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM---GIEPVIMSAGE------LES---ERAGEPGKLIRERYRTASQVVQNQGKMSCLM 122 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~---g~~~i~vs~~e------L~s---~~~GEser~IR~~F~~A~~~~~~~gaPcILF 122 (321)
.+++.||.|+|||-+|+|+|..+ .=+||++..+| +.+ +|+|..+= ..+.+|.. +.-=|||+
T Consensus 593 wflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evskligsp~gyvG~e~g---g~Lteavr----rrP~sVVL 665 (898)
T KOG1051|consen 593 WFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSKLIGSPPGYVGKEEG---GQLTEAVK----RRPYSVVL 665 (898)
T ss_pred EEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhhccCCCcccccchhH---HHHHHHHh----cCCceEEE
Confidence 57899999999999999999987 23889988885 222 26665543 24444432 23459999
Q ss_pred eecccccCCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCC
Q 020787 123 INDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFS 184 (321)
Q Consensus 123 IDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~ 184 (321)
|||||..-+ .|...|+.++|.-..--..| ...+ -+++.||+|.|.-.
T Consensus 666 fdeIEkAh~------------~v~n~llq~lD~GrltDs~G--r~Vd-~kN~I~IMTsn~~~ 712 (898)
T KOG1051|consen 666 FEEIEKAHP------------DVLNILLQLLDRGRLTDSHG--REVD-FKNAIFIMTSNVGS 712 (898)
T ss_pred EechhhcCH------------HHHHHHHHHHhcCccccCCC--cEee-ccceEEEEecccch
Confidence 999998532 24455666776321111111 1122 35799999977643
No 316
>PRK06217 hypothetical protein; Validated
Probab=97.31 E-value=0.00013 Score=63.99 Aligned_cols=31 Identities=16% Similarity=0.246 Sum_probs=26.9
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEee
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMS 85 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs 85 (321)
.++|.|+||+|||++|+++++.+|++++.+.
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D 33 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTD 33 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcC
Confidence 4678999999999999999999998866543
No 317
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=97.31 E-value=0.00015 Score=65.03 Aligned_cols=35 Identities=31% Similarity=0.513 Sum_probs=28.3
Q ss_pred hccccCCCCcHHHHHHHHHHHcCCceEEeeccccccc
Q 020787 56 LCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESE 92 (321)
Q Consensus 56 LgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~ 92 (321)
+.|.||||+|||++|+.+|+++|+.. ++.++|+.+
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~--is~gdllr~ 36 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPH--ISTGDLLRA 36 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCe--eehhHHHHH
Confidence 46899999999999999999998655 555666643
No 318
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.30 E-value=0.00086 Score=59.86 Aligned_cols=23 Identities=22% Similarity=0.166 Sum_probs=20.4
Q ss_pred HhccccCCCCcHHHHHHHHHHHc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM 77 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~ 77 (321)
+..|+||||||||.+|..+|...
T Consensus 21 v~~I~G~~GsGKT~l~~~ia~~~ 43 (226)
T cd01393 21 ITEIFGEFGSGKTQLCLQLAVEA 43 (226)
T ss_pred EEEEeCCCCCChhHHHHHHHHHh
Confidence 77899999999999999888653
No 319
>PRK04182 cytidylate kinase; Provisional
Probab=97.29 E-value=0.00015 Score=61.79 Aligned_cols=29 Identities=28% Similarity=0.469 Sum_probs=26.4
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEE
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVI 83 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~ 83 (321)
+++|.|+||||||++++++|+++|++++.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~~~id 30 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGLKHVS 30 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEec
Confidence 46789999999999999999999998765
No 320
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.29 E-value=0.00041 Score=61.30 Aligned_cols=68 Identities=16% Similarity=0.308 Sum_probs=43.2
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCC--ceEEeecc-ccccc---c----------CCCcHHHHHHHHHHHHhhhhhcCCc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGI--EPVIMSAG-ELESE---R----------AGEPGKLIRERYRTASQVVQNQGKM 118 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~--~~i~vs~~-eL~s~---~----------~GEser~IR~~F~~A~~~~~~~gaP 118 (321)
.++|.||+|+|||++.++++..... ..+.+... |+..+ + .+.+...+.+..+.+... .|
T Consensus 27 ~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lR~-----~p 101 (186)
T cd01130 27 NILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRSALRM-----RP 101 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHHHHhcc-----CC
Confidence 7899999999999999999987642 22332221 22111 1 122334455566655533 79
Q ss_pred eEEEeeccc
Q 020787 119 SCLMINDID 127 (321)
Q Consensus 119 cILFIDEID 127 (321)
.+|++.||-
T Consensus 102 d~i~igEir 110 (186)
T cd01130 102 DRIIVGEVR 110 (186)
T ss_pred CEEEEEccC
Confidence 999999993
No 321
>PRK04296 thymidine kinase; Provisional
Probab=97.29 E-value=0.0005 Score=61.36 Aligned_cols=69 Identities=17% Similarity=0.280 Sum_probs=42.8
Q ss_pred HhccccCCCCcHHHHHHHHHHHc---CCceEEeecc----c----cccccCCCc-----HHHHHHHHHHHHhhhhhcCCc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM---GIEPVIMSAG----E----LESERAGEP-----GKLIRERYRTASQVVQNQGKM 118 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~---g~~~i~vs~~----e----L~s~~~GEs-----er~IR~~F~~A~~~~~~~gaP 118 (321)
+.+++||||+|||+++...+.++ |-..+.++++ + +.+ ..|-+ -....++++.+.+ ..+.+
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~~~~~i~~-~lg~~~~~~~~~~~~~~~~~~~~---~~~~~ 79 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYGEGKVVS-RIGLSREAIPVSSDTDIFELIEE---EGEKI 79 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEeccccccccCCcEec-CCCCcccceEeCChHHHHHHHHh---hCCCC
Confidence 45789999999999887777665 5555555431 1 222 22321 1123455655544 14578
Q ss_pred eEEEeeccc
Q 020787 119 SCLMINDID 127 (321)
Q Consensus 119 cILFIDEID 127 (321)
.+|+|||+.
T Consensus 80 dvviIDEaq 88 (190)
T PRK04296 80 DCVLIDEAQ 88 (190)
T ss_pred CEEEEEccc
Confidence 999999993
No 322
>PRK14528 adenylate kinase; Provisional
Probab=97.27 E-value=0.00018 Score=63.90 Aligned_cols=36 Identities=25% Similarity=0.522 Sum_probs=29.3
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeeccccccc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESE 92 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~ 92 (321)
.+.+.||||+|||++|+.+|+..|++. ++.++++..
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~~~~~~~--is~~~~lr~ 38 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCERLSIPQ--ISTGDILRE 38 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCe--eeCCHHHHH
Confidence 357899999999999999999999765 445766643
No 323
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.27 E-value=0.00014 Score=63.19 Aligned_cols=23 Identities=26% Similarity=0.303 Sum_probs=16.1
Q ss_pred HhccccCCCCcHHHHHHHHHHHc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM 77 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~ 77 (321)
+.+++||||||||.++-.++..+
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCChHHHHHHHHHHh
Confidence 67899999999996555555554
No 324
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.25 E-value=0.00019 Score=66.70 Aligned_cols=35 Identities=20% Similarity=0.432 Sum_probs=29.4
Q ss_pred hccccCCCCcHHHHHHHHHHHcCCceEEeeccccccc
Q 020787 56 LCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESE 92 (321)
Q Consensus 56 LgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~ 92 (321)
+.|.||||+|||++|+.+|+.+|+ .+++.++++..
T Consensus 9 Ivl~G~PGsGK~T~a~~La~~~g~--~~is~gdllr~ 43 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSKKENL--KHINMGNILRE 43 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCC--cEEECChHHHH
Confidence 678999999999999999999986 45666777754
No 325
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=97.24 E-value=0.00093 Score=58.21 Aligned_cols=73 Identities=16% Similarity=0.268 Sum_probs=44.9
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCC--ceEEeecccccc---------ccCCCc----------------HHHHHHHHHH
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGI--EPVIMSAGELES---------ERAGEP----------------GKLIRERYRT 107 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~--~~i~vs~~eL~s---------~~~GEs----------------er~IR~~F~~ 107 (321)
+++|.||+|||||+|+++++..... --|.+.+.++.. .|+.+. -.--+++..-
T Consensus 30 ~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~G~~qrv~l 109 (178)
T cd03247 30 KIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSGGERQRLAL 109 (178)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCHHHHHHHHH
Confidence 8899999999999999999987532 112222211100 000000 0012445566
Q ss_pred HHhhhhhcCCceEEEeecccccC
Q 020787 108 ASQVVQNQGKMSCLMINDIDAGL 130 (321)
Q Consensus 108 A~~~~~~~gaPcILFIDEIDAg~ 130 (321)
|+..+. .|.+|++||--++.
T Consensus 110 aral~~---~p~~lllDEP~~~L 129 (178)
T cd03247 110 ARILLQ---DAPIVLLDEPTVGL 129 (178)
T ss_pred HHHHhc---CCCEEEEECCcccC
Confidence 666644 89999999998876
No 326
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.24 E-value=0.00092 Score=59.06 Aligned_cols=23 Identities=35% Similarity=0.331 Sum_probs=21.7
Q ss_pred HhccccCCCCcHHHHHHHHHHHc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM 77 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~ 77 (321)
+++|-||+|||||+|.++++...
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 28 ITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 89999999999999999999875
No 327
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.24 E-value=0.00073 Score=58.98 Aligned_cols=24 Identities=25% Similarity=0.238 Sum_probs=21.8
Q ss_pred HhccccCCCCcHHHHHHHHHHHcC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMG 78 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g 78 (321)
+++|.||+|+|||+|+++++....
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~~ 51 (178)
T cd03229 28 IVALLGPSGSGKSTLLRCIAGLEE 51 (178)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 899999999999999999997643
No 328
>PRK14527 adenylate kinase; Provisional
Probab=97.23 E-value=0.00014 Score=64.11 Aligned_cols=37 Identities=27% Similarity=0.505 Sum_probs=30.3
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeecccccccc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESER 93 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~~ 93 (321)
+++++||||+|||++|+.+|++.|+. .++.++++...
T Consensus 8 ~i~i~G~pGsGKsT~a~~La~~~~~~--~is~gd~~r~~ 44 (191)
T PRK14527 8 VVIFLGPPGAGKGTQAERLAQELGLK--KLSTGDILRDH 44 (191)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCC--CCCccHHHHHH
Confidence 67899999999999999999999864 45566776543
No 329
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=97.23 E-value=0.00047 Score=68.26 Aligned_cols=23 Identities=22% Similarity=0.284 Sum_probs=21.4
Q ss_pred HhccccCCCCcHHHHHHHHHHHc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM 77 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~ 77 (321)
+++|.||+|||||+|.+++|.-.
T Consensus 47 ~~~llGpsGsGKSTLLr~IaGl~ 69 (377)
T PRK11607 47 IFALLGASGCGKSTLLRMLAGFE 69 (377)
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 89999999999999999999764
No 330
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=97.23 E-value=0.00075 Score=59.92 Aligned_cols=23 Identities=26% Similarity=0.225 Sum_probs=21.9
Q ss_pred HhccccCCCCcHHHHHHHHHHHc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM 77 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~ 77 (321)
+++|.||+|||||+|.+++|...
T Consensus 37 ~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 37 LTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 89999999999999999999876
No 331
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=97.22 E-value=0.0019 Score=58.29 Aligned_cols=33 Identities=18% Similarity=0.127 Sum_probs=25.1
Q ss_pred hHhccccCCCCcHHHHHHHHHHHc----CCceEEeec
Q 020787 54 ASLCIWGGKGQGKSFQTELIFQAM----GIEPVIMSA 86 (321)
Q Consensus 54 ~iLgL~GPPGcGKTllaravA~e~----g~~~i~vs~ 86 (321)
+..+|.||||+|||.+|..+|... |.+.+.++.
T Consensus 14 ~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~ 50 (242)
T cd00984 14 DLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSL 50 (242)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeC
Confidence 367899999999999987766544 777666663
No 332
>PRK06696 uridine kinase; Validated
Probab=97.22 E-value=0.00023 Score=64.67 Aligned_cols=37 Identities=16% Similarity=0.226 Sum_probs=32.7
Q ss_pred HhccccCCCCcHHHHHHHHHHHc---CCceEEeecccccc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM---GIEPVIMSAGELES 91 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~---g~~~i~vs~~eL~s 91 (321)
+++|.||||||||++|+.++..+ |.+.++++.-++..
T Consensus 24 iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~ 63 (223)
T PRK06696 24 RVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFHN 63 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccccC
Confidence 88999999999999999999999 77788877777764
No 333
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=97.20 E-value=0.0011 Score=58.93 Aligned_cols=77 Identities=19% Similarity=0.205 Sum_probs=46.2
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEee-ccccc--cc----------------------cCCCcHHHH----HHHH
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMS-AGELE--SE----------------------RAGEPGKLI----RERY 105 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs-~~eL~--s~----------------------~~GEser~I----R~~F 105 (321)
.-.|.||.|+|||.+.+|++--++....... ..++. .. .-|+.++.+ +++.
T Consensus 24 ~~~i~G~NGsGKSnil~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~LS~Ge~~r~ 103 (178)
T cd03239 24 FNAIVGPNGSGKSNIVDAICFVLGGKAAKLRRGSLLFLAGGGVKAGINSASVEITFDKSYFLVLQGKVEQILSGGEKSLS 103 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCcccccccCcchhhhcccccCCCCceEEEEEEEECceEEecCCcCcccCCHHHHHHH
Confidence 5679999999999999999887775433332 22220 00 123332222 3334
Q ss_pred HHHHhhhh-hcCCceEEEeecccccCC
Q 020787 106 RTASQVVQ-NQGKMSCLMINDIDAGLG 131 (321)
Q Consensus 106 ~~A~~~~~-~~gaPcILFIDEIDAg~~ 131 (321)
.-|+..+. ....|.++++||.++++.
T Consensus 104 ~Laral~~~~~~~p~llilDEp~~~LD 130 (178)
T cd03239 104 ALALIFALQEIKPSPFYVLDEIDAALD 130 (178)
T ss_pred HHHHHHHHhcCCCCCEEEEECCCCCCC
Confidence 44443321 014799999999999873
No 334
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.20 E-value=0.00078 Score=59.01 Aligned_cols=24 Identities=25% Similarity=0.246 Sum_probs=22.0
Q ss_pred HhccccCCCCcHHHHHHHHHHHcC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMG 78 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g 78 (321)
+++|.||+|+|||+|.++++....
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~~ 51 (182)
T cd03215 28 IVGIAGLVGNGQTELAEALFGLRP 51 (182)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 899999999999999999998753
No 335
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=97.20 E-value=0.00024 Score=64.33 Aligned_cols=52 Identities=33% Similarity=0.373 Sum_probs=36.8
Q ss_pred ccccCCCCcHHHHHHHHHHHcCCceEEeeccccccccCCCcHHHHHHHHHHHHh
Q 020787 57 CIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQ 110 (321)
Q Consensus 57 gL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~~~GEser~IR~~F~~A~~ 110 (321)
-+.||||||||+.++.+|+.+|.+++ |+|.++...+-|-+=-+-+..+.|.+
T Consensus 4 tIsG~pGsG~TTva~~lAe~~gl~~v--saG~iFR~~A~e~gmsl~ef~~~AE~ 55 (179)
T COG1102 4 TISGLPGSGKTTVARELAEHLGLKLV--SAGTIFREMARERGMSLEEFSRYAEE 55 (179)
T ss_pred EeccCCCCChhHHHHHHHHHhCCcee--eccHHHHHHHHHcCCCHHHHHHHHhc
Confidence 47899999999999999999999875 56766654443333334444444543
No 336
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.19 E-value=0.00047 Score=59.43 Aligned_cols=27 Identities=22% Similarity=0.193 Sum_probs=23.3
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCce
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEP 81 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~ 81 (321)
+++|.||+|||||++++++++......
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~~~~~~ 29 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEEDPNLK 29 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHccCcccc
Confidence 578999999999999999999875533
No 337
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=97.18 E-value=0.00057 Score=68.00 Aligned_cols=77 Identities=19% Similarity=0.222 Sum_probs=48.8
Q ss_pred cccchhhhh-------HhccccCCCCcHHHHHHHHHHHcC-----CceEEeecc-ccc-----------cccCCCcHHHH
Q 020787 46 YYIAPVFMA-------SLCIWGGKGQGKSFQTELIFQAMG-----IEPVIMSAG-ELE-----------SERAGEPGKLI 101 (321)
Q Consensus 46 ~~~~p~f~~-------iLgL~GPPGcGKTllaravA~e~g-----~~~i~vs~~-eL~-----------s~~~GEser~I 101 (321)
+..||.+++ ..++.||+|||||++.++++.... ...+.+--+ |+. ..-+|.....
T Consensus 135 lgl~~~~~~~l~~~~GlilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~~~~~~~~~~q~evg~~~~~- 213 (372)
T TIGR02525 135 MGIEPDLFNSLLPAAGLGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILGSPDDLLPPAQSQIGRDVDS- 213 (372)
T ss_pred cCCCHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccCCCceeecccccccCCCccC-
Confidence 457777776 457999999999999999988773 345555332 322 1123332222
Q ss_pred HHHHHHHHhhhhhcCCceEEEeeccc
Q 020787 102 RERYRTASQVVQNQGKMSCLMINDID 127 (321)
Q Consensus 102 R~~F~~A~~~~~~~gaPcILFIDEID 127 (321)
|..|.+.+- +-.|.+|++.||-
T Consensus 214 ---~~~~l~~aL-R~~PD~I~vGEiR 235 (372)
T TIGR02525 214 ---FANGIRLAL-RRAPKIIGVGEIR 235 (372)
T ss_pred ---HHHHHHHhh-ccCCCEEeeCCCC
Confidence 444433321 4489999999985
No 338
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=97.18 E-value=0.001 Score=59.68 Aligned_cols=23 Identities=26% Similarity=0.364 Sum_probs=21.6
Q ss_pred HhccccCCCCcHHHHHHHHHHHc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM 77 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~ 77 (321)
+++|.||+|||||+|.++++...
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (223)
T TIGR03740 28 VYGLLGPNGAGKSTLLKMITGIL 50 (223)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 89999999999999999999865
No 339
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.17 E-value=0.0015 Score=58.20 Aligned_cols=23 Identities=22% Similarity=0.228 Sum_probs=21.5
Q ss_pred HhccccCCCCcHHHHHHHHHHHc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM 77 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~ 77 (321)
+++|-||+|||||+|.++++...
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~~ 51 (204)
T PRK13538 29 LVQIEGPNGAGKTSLLRILAGLA 51 (204)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 89999999999999999999864
No 340
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.16 E-value=0.00086 Score=58.30 Aligned_cols=23 Identities=22% Similarity=0.407 Sum_probs=21.5
Q ss_pred HhccccCCCCcHHHHHHHHHHHc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM 77 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~ 77 (321)
+++|.||+|||||+|.+++|...
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 28 IYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 89999999999999999999864
No 341
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=97.16 E-value=0.0016 Score=57.76 Aligned_cols=24 Identities=25% Similarity=0.318 Sum_probs=22.1
Q ss_pred HhccccCCCCcHHHHHHHHHHHcC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMG 78 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g 78 (321)
+++|.||+|||||+|+++++....
T Consensus 33 ~~~i~G~nG~GKSTLl~~i~G~~~ 56 (204)
T cd03250 33 LVAIVGPVGSGKSSLLSALLGELE 56 (204)
T ss_pred EEEEECCCCCCHHHHHHHHhCcCC
Confidence 899999999999999999998753
No 342
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=97.15 E-value=0.00026 Score=60.02 Aligned_cols=29 Identities=17% Similarity=0.376 Sum_probs=26.1
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEE
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVI 83 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~ 83 (321)
+++|.|+||+|||++|+.+|+++|++++.
T Consensus 2 iI~i~G~~GSGKstia~~la~~lg~~~~~ 30 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKLSLKLIS 30 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCceec
Confidence 46899999999999999999999988654
No 343
>PRK13948 shikimate kinase; Provisional
Probab=97.15 E-value=0.00073 Score=60.76 Aligned_cols=40 Identities=18% Similarity=0.086 Sum_probs=32.2
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeeccccccccCCC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGE 96 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~~~GE 96 (321)
.+.|.|++|||||++++.+|+.+|..||-.. .+..+..|.
T Consensus 12 ~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D--~~ie~~~g~ 51 (182)
T PRK13948 12 WVALAGFMGTGKSRIGWELSRALMLHFIDTD--RYIERVTGK 51 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCEEECC--HHHHHHHhC
Confidence 3678999999999999999999999998655 344445554
No 344
>PRK00889 adenylylsulfate kinase; Provisional
Probab=97.14 E-value=0.00079 Score=58.29 Aligned_cols=33 Identities=15% Similarity=0.292 Sum_probs=26.6
Q ss_pred HhccccCCCCcHHHHHHHHHHHc---CCceEEeecc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM---GIEPVIMSAG 87 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~---g~~~i~vs~~ 87 (321)
++.|.|+||+|||+++++++..+ |..+..+++-
T Consensus 6 ~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D 41 (175)
T PRK00889 6 TVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGD 41 (175)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCc
Confidence 57899999999999999999987 4345556553
No 345
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=97.14 E-value=0.00083 Score=68.85 Aligned_cols=159 Identities=20% Similarity=0.295 Sum_probs=90.5
Q ss_pred HhccccCCCCcHHHHHHHHHHHcC---CceEEeecccccc-----ccCC--------CcHHHHHHHHHHHHhhhhhcCCc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMG---IEPVIMSAGELES-----ERAG--------EPGKLIRERYRTASQVVQNQGKM 118 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g---~~~i~vs~~eL~s-----~~~G--------Eser~IR~~F~~A~~~~~~~gaP 118 (321)
-++|+|++||||-+.||++-.... -+||.|+++.+-. ...| ...+. --.|+.| .=
T Consensus 166 ~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l~ESELFGhekGAFTGA~~~r-~G~fE~A--------~G 236 (464)
T COG2204 166 SVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENLLESELFGHEKGAFTGAITRR-IGRFEQA--------NG 236 (464)
T ss_pred CEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHHHHHHhhcccccCcCCccccc-CcceeEc--------CC
Confidence 689999999999999999976654 5999999976542 1111 11110 1144444 23
Q ss_pred eEEEeecccccCCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccccCCCCCCCcc
Q 020787 119 SCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEK 198 (321)
Q Consensus 119 cILFIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpALlRpGRfDr 198 (321)
-.||+|||-...- .++.-||-.+..-..--++| ..+..-+|=||+|||+. | ..++-.|||=.
T Consensus 237 GTLfLDEI~~mpl------------~~Q~kLLRvLqe~~~~rvG~---~~~i~vdvRiIaaT~~d--L-~~~v~~G~FRe 298 (464)
T COG2204 237 GTLFLDEIGEMPL------------ELQVKLLRVLQEREFERVGG---NKPIKVDVRIIAATNRD--L-EEEVAAGRFRE 298 (464)
T ss_pred ceEEeeccccCCH------------HHHHHHHHHHHcCeeEecCC---CcccceeeEEEeecCcC--H-HHHHHcCCcHH
Confidence 5799999977531 23344554443221112332 11123367799999974 1 24777888865
Q ss_pred -ee--------cCCCHHHHHH-HH-------HHHhhc-----CCCCHHHHHHhhhCCCCCcchhhHHHHH
Q 020787 199 -FY--------WQPNLEDILN-IV-------HRMYEK-----DGITKDEVGSIVKTFPNQALDFYGALRS 246 (321)
Q Consensus 199 -~i--------~~Pd~~~R~~-Il-------~~~~~~-----~~l~~~dl~~L~d~f~gq~idf~gAlra 246 (321)
.| .+|...+|.+ |. +.+.+. ..++.+.+..|.. -++-|.+|+
T Consensus 299 DLyyRLnV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~a~~~L~~------y~WPGNVRE 362 (464)
T COG2204 299 DLYYRLNVVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPEALAALLA------YDWPGNVRE 362 (464)
T ss_pred HHHhhhccceecCCcccccchhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHh------CCCChHHHH
Confidence 22 2465555544 43 222221 1356777777753 355566664
No 346
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=97.14 E-value=0.00082 Score=64.02 Aligned_cols=72 Identities=19% Similarity=0.232 Sum_probs=44.8
Q ss_pred HhccccCCCCcHHHHHHHHHHH---cCCceEEeeccccc--c-cc-CCCcHHHHHHHHHHHHhhhhhcCCceEEEeeccc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQA---MGIEPVIMSAGELE--S-ER-AGEPGKLIRERYRTASQVVQNQGKMSCLMINDID 127 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e---~g~~~i~vs~~eL~--s-~~-~GEser~IR~~F~~A~~~~~~~gaPcILFIDEID 127 (321)
.+.|+|.||+|||++|+.++.. .+...+.++-.++. . .| --..||.+|..++.+.+.. -++-.|+++|+.=
T Consensus 3 Liil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r~--ls~~~iVI~Dd~n 80 (270)
T PF08433_consen 3 LIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDRNDYADSKKEKEARGSLKSAVERA--LSKDTIVILDDNN 80 (270)
T ss_dssp EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHHHHH--HTT-SEEEE-S--
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccchhhhhchhhhHHHHHHHHHHHHHh--hccCeEEEEeCCc
Confidence 3679999999999999999876 56777777755544 1 12 3456999999988886553 2355788888765
Q ss_pred c
Q 020787 128 A 128 (321)
Q Consensus 128 A 128 (321)
-
T Consensus 81 Y 81 (270)
T PF08433_consen 81 Y 81 (270)
T ss_dssp -
T ss_pred h
Confidence 3
No 347
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.14 E-value=0.00057 Score=62.07 Aligned_cols=75 Identities=12% Similarity=0.173 Sum_probs=46.7
Q ss_pred HhccccCCCCcHHHHHHHHHHH---cCCceEEeecccccc--------------ccC---------------CCcHHHHH
Q 020787 55 SLCIWGGKGQGKSFQTELIFQA---MGIEPVIMSAGELES--------------ERA---------------GEPGKLIR 102 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e---~g~~~i~vs~~eL~s--------------~~~---------------GEser~IR 102 (321)
+.+|+||||||||++|..++.+ .|-..+.++..+-.. ++. ........
T Consensus 27 ~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~~~~~~~~~~g~~~~~~~~~g~l~i~~~~~~~~~~~~~~~~ 106 (234)
T PRK06067 27 LILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKSYLKQMESVKIDISDFFLWGYLRIFPLNTEGFEWNSTLAN 106 (234)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHHHHHCCCChhHHHhCCCceEEeccccccccCcchHH
Confidence 7789999999999999998654 355554444421110 000 00112234
Q ss_pred HHHHHHHhhhhhcCCceEEEeecccccC
Q 020787 103 ERYRTASQVVQNQGKMSCLMINDIDAGL 130 (321)
Q Consensus 103 ~~F~~A~~~~~~~gaPcILFIDEIDAg~ 130 (321)
+++..+.+.++ ...|.+|+|||+-++.
T Consensus 107 ~ll~~l~~~i~-~~~~~~iviDs~t~~~ 133 (234)
T PRK06067 107 KLLELIIEFIK-SKREDVIIIDSLTIFA 133 (234)
T ss_pred HHHHHHHHHHH-hcCCCEEEEecHHHHH
Confidence 55666655554 3589999999999864
No 348
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.13 E-value=0.00092 Score=64.21 Aligned_cols=73 Identities=19% Similarity=0.273 Sum_probs=47.5
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCce--EEeecccccccc--------------CCCcHHH-----------HHHHHHH
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEP--VIMSAGELESER--------------AGEPGKL-----------IRERYRT 107 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~--i~vs~~eL~s~~--------------~GEser~-----------IR~~F~~ 107 (321)
+|||.|.+|||||+++|++..-..... |...+-++..-. +|-++.. =|+++.-
T Consensus 41 ~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~I 120 (268)
T COG4608 41 TLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGI 120 (268)
T ss_pred EEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHH
Confidence 899999999999999999998766421 223332222111 1211111 1455556
Q ss_pred HHhhhhhcCCceEEEeecccccC
Q 020787 108 ASQVVQNQGKMSCLMINDIDAGL 130 (321)
Q Consensus 108 A~~~~~~~gaPcILFIDEIDAg~ 130 (321)
|+..+ ..|.+|+.||.-+..
T Consensus 121 ARALa---l~P~liV~DEpvSaL 140 (268)
T COG4608 121 ARALA---LNPKLIVADEPVSAL 140 (268)
T ss_pred HHHHh---hCCcEEEecCchhhc
Confidence 77774 489999999998865
No 349
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=97.12 E-value=0.00034 Score=63.00 Aligned_cols=49 Identities=29% Similarity=0.337 Sum_probs=35.4
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeeccccccccCCCcH---HHHHHHH
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPG---KLIRERY 105 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~~~GEse---r~IR~~F 105 (321)
+++|.||||||||++|+.+++.+|++++ ++.++......+.+ +.++++|
T Consensus 3 ~i~itG~~gsGKst~~~~l~~~~g~~~i--~~D~~~~~~~~~~~~~~~~l~~~f 54 (195)
T PRK14730 3 RIGLTGGIASGKSTVGNYLAQQKGIPIL--DADIYAREALAPGSPILKAILQRY 54 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCCeEe--eCcHHHHHHHhcCchHHHHHHHHh
Confidence 5799999999999999999998898776 56665544332222 3444455
No 350
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=97.12 E-value=0.00041 Score=54.07 Aligned_cols=23 Identities=17% Similarity=0.225 Sum_probs=19.8
Q ss_pred hccccCCCCcHHHHHHHHHHHcC
Q 020787 56 LCIWGGKGQGKSFQTELIFQAMG 78 (321)
Q Consensus 56 LgL~GPPGcGKTllaravA~e~g 78 (321)
+.|+||+|+|||+++-+.+.++.
T Consensus 3 ~~i~~~~G~GKT~~~~~~~~~~~ 25 (144)
T cd00046 3 VLLAAPTGSGKTLAALLPILELL 25 (144)
T ss_pred EEEECCCCCchhHHHHHHHHHHH
Confidence 57899999999999988877764
No 351
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=97.11 E-value=0.00039 Score=61.11 Aligned_cols=38 Identities=29% Similarity=0.487 Sum_probs=29.9
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeeccccccccCC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAG 95 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~~~G 95 (321)
|+||.|+||||||++++.+++ +|++ ++++.++......
T Consensus 1 ii~itG~~gsGKst~~~~l~~-~g~~--~i~~D~~~~~~~~ 38 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE-LGIP--VIDADKIAHEVYE 38 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH-CCCC--EEecCHHHHhhhh
Confidence 579999999999999999998 7765 4556676655443
No 352
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.11 E-value=0.0006 Score=64.85 Aligned_cols=25 Identities=32% Similarity=0.231 Sum_probs=21.6
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGI 79 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~ 79 (321)
++.|-||+|||||+|.+++|.-...
T Consensus 31 fvsilGpSGcGKSTLLriiAGL~~p 55 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGLEKP 55 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 6788999999999999999975543
No 353
>PRK13975 thymidylate kinase; Provisional
Probab=97.10 E-value=0.00049 Score=60.08 Aligned_cols=27 Identities=22% Similarity=0.271 Sum_probs=23.8
Q ss_pred hccccCCCCcHHHHHHHHHHHcCCceE
Q 020787 56 LCIWGGKGQGKSFQTELIFQAMGIEPV 82 (321)
Q Consensus 56 LgL~GPPGcGKTllaravA~e~g~~~i 82 (321)
+.|-||+|||||++++.+|+.++....
T Consensus 5 I~ieG~~GsGKtT~~~~L~~~l~~~~~ 31 (196)
T PRK13975 5 IVFEGIDGSGKTTQAKLLAEKLNAFWT 31 (196)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCee
Confidence 568899999999999999999997543
No 354
>PRK14529 adenylate kinase; Provisional
Probab=97.10 E-value=0.00038 Score=64.75 Aligned_cols=38 Identities=26% Similarity=0.498 Sum_probs=31.7
Q ss_pred hccccCCCCcHHHHHHHHHHHcCCceEEeeccccccccCC
Q 020787 56 LCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAG 95 (321)
Q Consensus 56 LgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~~~G 95 (321)
+.|.||||||||++|+.+|+++++.. +|.++++...+.
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~~~~--is~gdllr~~i~ 40 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYDLAH--IESGAIFREHIG 40 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCC--cccchhhhhhcc
Confidence 46799999999999999999998654 667888876543
No 355
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.09 E-value=0.0019 Score=62.11 Aligned_cols=132 Identities=15% Similarity=0.296 Sum_probs=83.2
Q ss_pred HhccccCCCCcHHHHHHHHHHHcC---CceEEeeccccccccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeecccccCC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMG---IEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLG 131 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g---~~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~~ 131 (321)
-.+|||--|+|||+++||+.++.+ ..+|.|+..+|.. +-.++..-+ .+...-|||.||+-
T Consensus 87 nVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl~~---------Lp~l~~~Lr----~~~~kFIlFcDDLS---- 149 (287)
T COG2607 87 NVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDLAT---------LPDLVELLR----ARPEKFILFCDDLS---- 149 (287)
T ss_pred ceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHHHhh---------HHHHHHHHh----cCCceEEEEecCCC----
Confidence 578999999999999999998875 5677788887763 334444433 24578999999872
Q ss_pred CCC--CCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccccCC-CCC--------------
Q 020787 132 RFG--NTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLI-RDG-------------- 194 (321)
Q Consensus 132 r~~--~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpALl-RpG-------------- 194 (321)
|+ .+.+ + .|=..||| ...+ .-.+|.|.+|.||-..|.--.. ++|
T Consensus 150 -Fe~gd~~y----K----~LKs~LeG--------~ve~--rP~NVl~YATSNRRHLl~e~~~dn~~~~~eih~~eaveEK 210 (287)
T COG2607 150 -FEEGDDAY----K----ALKSALEG--------GVEG--RPANVLFYATSNRRHLLPEDMKDNEGSTGEIHPSEAVEEK 210 (287)
T ss_pred -CCCCchHH----H----HHHHHhcC--------Cccc--CCCeEEEEEecCCcccccHhhhhCCCcccccChhHHHHHh
Confidence 33 1111 2 23344564 1112 2358999999999877762211 111
Q ss_pred -----CCccee--cCCCHHHHHHHHHHHhhcCCCC
Q 020787 195 -----RMEKFY--WQPNLEDILNIVHRMYEKDGIT 222 (321)
Q Consensus 195 -----RfDr~i--~~Pd~~~R~~Il~~~~~~~~l~ 222 (321)
||--++ +.|+.++=+.|++.+.++-+++
T Consensus 211 lSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~ 245 (287)
T COG2607 211 LSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLD 245 (287)
T ss_pred hchhhhcceeecccCCCHHHHHHHHHHHHHHcCCC
Confidence 333322 2357777777777777665543
No 356
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=97.09 E-value=0.00064 Score=70.96 Aligned_cols=72 Identities=14% Similarity=0.087 Sum_probs=45.4
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCC----ceEEeeccccccccCCC-------cHHHHHHHHHHHHhhhhhcCCceEEEe
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGI----EPVIMSAGELESERAGE-------PGKLIRERYRTASQVVQNQGKMSCLMI 123 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~----~~i~vs~~eL~s~~~GE-------ser~IR~~F~~A~~~~~~~gaPcILFI 123 (321)
.+.|.|+||||||++++++|+.++. +++.+++..+.....|| .+..++.+-..|.+.++ .|. +++
T Consensus 394 ~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D~vr~~l~ge~~f~~~er~~~~~~l~~~a~~v~~-~Gg--~vI- 469 (568)
T PRK05537 394 TVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVVRKHLSSELGFSKEDRDLNILRIGFVASEITK-NGG--IAI- 469 (568)
T ss_pred EEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCcHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHh-CCC--EEE-
Confidence 6788999999999999999999986 34556655443334454 33344444445655544 443 333
Q ss_pred ecccccCCC
Q 020787 124 NDIDAGLGR 132 (321)
Q Consensus 124 DEIDAg~~r 132 (321)
+|+.++.
T Consensus 470 --~~~~~p~ 476 (568)
T PRK05537 470 --CAPIAPY 476 (568)
T ss_pred --EEeCCch
Confidence 4555553
No 357
>PRK00300 gmk guanylate kinase; Provisional
Probab=97.09 E-value=0.0013 Score=57.94 Aligned_cols=24 Identities=21% Similarity=0.296 Sum_probs=22.5
Q ss_pred HhccccCCCCcHHHHHHHHHHHcC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMG 78 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g 78 (321)
+++|.||+|||||+++++++....
T Consensus 7 ~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 7 LIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred EEEEECCCCCCHHHHHHHHHhhCc
Confidence 678999999999999999999986
No 358
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.09 E-value=0.0011 Score=60.47 Aligned_cols=114 Identities=16% Similarity=0.134 Sum_probs=61.2
Q ss_pred hHhccccCCCCcHHHHHHHHH-----HHcCCceEEeec--------------cccccccCCCcHHHHHHHHHHHHhhhhh
Q 020787 54 ASLCIWGGKGQGKSFQTELIF-----QAMGIEPVIMSA--------------GELESERAGEPGKLIRERYRTASQVVQN 114 (321)
Q Consensus 54 ~iLgL~GPPGcGKTllaravA-----~e~g~~~i~vs~--------------~eL~s~~~GEser~IR~~F~~A~~~~~~ 114 (321)
.++.|.||+|+|||++.|.++ .++|.....-++ .+=+..+...=.+-++++-. |...
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~~~~la~~G~~v~a~~~~~~~~d~i~~~l~~~~si~~~~S~f~~el~~l~~-~l~~--- 105 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVALIVFLAHIGSFVPADSATIGLVDKIFTRMSSRESVSSGQSAFMIDLYQVSK-ALRL--- 105 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHHHHHHHhCCCeeEcCCcEEeeeeeeeeeeCCccChhhccchHHHHHHHHHH-HHHh---
Confidence 368899999999999999998 345653322111 11111111111222332222 3222
Q ss_pred cCCceEEEeecccccCCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccccCC
Q 020787 115 QGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLI 191 (321)
Q Consensus 115 ~gaPcILFIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpALl 191 (321)
...|++++|||+-++.-..+ ......+.+..+.+. . ..+..+|++|..++.+....+
T Consensus 106 ~~~~slvllDE~~~gtd~~~------~~~~~~ail~~l~~~-------------~-~~~~~vli~TH~~~l~~~~~~ 162 (213)
T cd03281 106 ATRRSLVLIDEFGKGTDTED------GAGLLIATIEHLLKR-------------G-PECPRVIVSTHFHELFNRSLL 162 (213)
T ss_pred CCCCcEEEeccccCCCCHHH------HHHHHHHHHHHHHhc-------------C-CCCcEEEEEcChHHHHHhhhh
Confidence 35899999999988763111 012222333333220 0 123568888888887766553
No 359
>PLN02674 adenylate kinase
Probab=97.08 E-value=0.00028 Score=66.58 Aligned_cols=37 Identities=22% Similarity=0.383 Sum_probs=30.6
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeecccccccc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESER 93 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~~ 93 (321)
.+.|.||||+|||++|+.+|++.|+ .++|.++++...
T Consensus 33 ~i~l~G~PGsGKgT~a~~La~~~~~--~his~GdllR~~ 69 (244)
T PLN02674 33 RLILIGPPGSGKGTQSPIIKDEYCL--CHLATGDMLRAA 69 (244)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCC--cEEchhHHHHHH
Confidence 4678999999999999999999985 566777777543
No 360
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=97.07 E-value=0.0014 Score=59.94 Aligned_cols=22 Identities=27% Similarity=0.122 Sum_probs=19.9
Q ss_pred hHhccccCCCCcHHHHHHHHHH
Q 020787 54 ASLCIWGGKGQGKSFQTELIFQ 75 (321)
Q Consensus 54 ~iLgL~GPPGcGKTllaravA~ 75 (321)
.+++|.||+|+|||++.|.++.
T Consensus 31 ~~~~l~Gpn~sGKstllr~i~~ 52 (216)
T cd03284 31 QILLITGPNMAGKSTYLRQVAL 52 (216)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 5789999999999999999863
No 361
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=97.04 E-value=0.0018 Score=57.38 Aligned_cols=36 Identities=19% Similarity=0.264 Sum_probs=31.0
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeeccccc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELE 90 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~ 90 (321)
++++.||||+|||.+|+.++.+.+.+.+.++.+...
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~~~ 38 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATAQPF 38 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCCCC
Confidence 468999999999999999999999888877776644
No 362
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.03 E-value=0.00073 Score=62.30 Aligned_cols=32 Identities=22% Similarity=0.249 Sum_probs=23.4
Q ss_pred HhccccCCCCcHHHHHHHHHHH---cCCceEEeec
Q 020787 55 SLCIWGGKGQGKSFQTELIFQA---MGIEPVIMSA 86 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e---~g~~~i~vs~ 86 (321)
+.+|.||||||||++|..++.. -|-..+.++.
T Consensus 26 ~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~ 60 (230)
T PRK08533 26 LILIEGDESTGKSILSQRLAYGFLQNGYSVSYVST 60 (230)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 8899999999999997554442 2555555554
No 363
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=97.03 E-value=0.00092 Score=62.05 Aligned_cols=23 Identities=26% Similarity=0.449 Sum_probs=21.5
Q ss_pred HhccccCCCCcHHHHHHHHHHHc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM 77 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~ 77 (321)
+++|.||+|+|||+|.+++|...
T Consensus 32 ~~~I~G~NGsGKSTLl~~i~Gl~ 54 (251)
T PRK09544 32 ILTLLGPNGAGKSTLVRVVLGLV 54 (251)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 89999999999999999999764
No 364
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.01 E-value=0.00038 Score=73.35 Aligned_cols=43 Identities=28% Similarity=0.300 Sum_probs=35.2
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCce-EEeeccccccccCCCc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEP-VIMSAGELESERAGEP 97 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~-i~vs~~eL~s~~~GEs 97 (321)
||+|.||||+|||+||+++|+-+.-.+ ..+.+++..|+...+|
T Consensus 105 IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~kg~~~~sP~~e~P 148 (644)
T PRK15455 105 ILYLLGPVGGGKSSLAERLKSLMERVPIYVLKANGERSPVNESP 148 (644)
T ss_pred eEEEecCCCCCchHHHHHHHHHHHhCcceeecCCCCCCCCCCCC
Confidence 999999999999999999999887644 4577766666666665
No 365
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=97.01 E-value=0.0013 Score=57.56 Aligned_cols=36 Identities=17% Similarity=0.313 Sum_probs=29.2
Q ss_pred HhccccCCCCcHHHHHHHHHHHc---CCceEEeeccccc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM---GIEPVIMSAGELE 90 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~---g~~~i~vs~~eL~ 90 (321)
+++|.|+||||||+++++++..+ |...+.+++..+-
T Consensus 20 ~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~r 58 (184)
T TIGR00455 20 VIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNVR 58 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHHH
Confidence 78999999999999999999987 4455667765553
No 366
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.00 E-value=0.0021 Score=55.37 Aligned_cols=32 Identities=19% Similarity=0.314 Sum_probs=24.8
Q ss_pred HhccccCCCCcHHHHHHHHHHHc---CCceEEeec
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM---GIEPVIMSA 86 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~---g~~~i~vs~ 86 (321)
+.++.||||+|||++++.+|..+ |...+.++.
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~ 36 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAA 36 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEc
Confidence 35788999999999999888765 555655554
No 367
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=97.00 E-value=0.0056 Score=55.11 Aligned_cols=47 Identities=15% Similarity=0.145 Sum_probs=29.5
Q ss_pred hhhhhhcc-CccccchhhhhHhccccCCCCcHHHHHHHHHHH---cCCceEEeec
Q 020787 36 TRSFEYLQ-GDYYIAPVFMASLCIWGGKGQGKSFQTELIFQA---MGIEPVIMSA 86 (321)
Q Consensus 36 ~~~~~~~~-~~~~~~p~f~~iLgL~GPPGcGKTllaravA~e---~g~~~i~vs~ 86 (321)
...++.+- ||++-- ..++|.||||||||.++..++.+ .|-..+.++.
T Consensus 6 i~~LD~~l~GGi~~G----~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~ 56 (229)
T TIGR03881 6 VEGLDKLLEGGIPRG----FFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTT 56 (229)
T ss_pred hhhHHHhhcCCCcCC----eEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEc
Confidence 34566654 443321 47889999999999999866532 2444444443
No 368
>PF13245 AAA_19: Part of AAA domain
Probab=96.99 E-value=0.00063 Score=53.10 Aligned_cols=32 Identities=19% Similarity=0.370 Sum_probs=22.9
Q ss_pred hccccCCCCcHH-HHHHHHHHHc------CCceEEeecc
Q 020787 56 LCIWGGKGQGKS-FQTELIFQAM------GIEPVIMSAG 87 (321)
Q Consensus 56 LgL~GPPGcGKT-llaravA~e~------g~~~i~vs~~ 87 (321)
+.|.|||||||| +++++++... +-.++.++..
T Consensus 13 ~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t 51 (76)
T PF13245_consen 13 FVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPT 51 (76)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCC
Confidence 456999999999 7777777766 4455555543
No 369
>PHA02624 large T antigen; Provisional
Probab=96.95 E-value=0.0035 Score=66.48 Aligned_cols=127 Identities=14% Similarity=0.145 Sum_probs=69.6
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeeccccccccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeecccccCC-CC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLG-RF 133 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~~-r~ 133 (321)
.++||||||+|||++|.++++.+|-..+.|+++.=-+ -|...-.. ---+.+|||+-.-+- ..
T Consensus 433 ~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt~ks------------~FwL~pl~-----D~~~~l~dD~t~~~~~~~ 495 (647)
T PHA02624 433 YWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPPDKL------------NFELGCAI-----DQFMVVFEDVKGQPADNK 495 (647)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCcchh------------HHHhhhhh-----hceEEEeeeccccccccc
Confidence 7899999999999999999999966677787552111 24433211 234667788876553 22
Q ss_pred C-CCccchhhHHHHHHHHhhcCCCCccccCccccccCCCC-CccEEEeeCCCCCccccCCCCCCCcceec-CCCH
Q 020787 134 G-NTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITN-RIPIIFTGNDFSTIYAPLIRDGRMEKFYW-QPNL 205 (321)
Q Consensus 134 ~-~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~-~V~VIaaTNrp~~LDpALlRpGRfDr~i~-~Pd~ 205 (321)
+ .++..++|- .-|-+.+||---|+++-- ...+.+. =-|.|+|||. ..|+..|.= ||-+.+. .|..
T Consensus 496 ~Lp~G~~~dNl---~~lRn~LDG~V~v~ld~K-H~n~~q~~~PPlliT~Ne-y~iP~T~~~--Rf~~~~~F~~k~ 563 (647)
T PHA02624 496 DLPSGQGMNNL---DNLRDYLDGSVPVNLEKK-HLNKRSQIFPPGIVTMNE-YLIPQTVKA--RFAKVLDFKPKP 563 (647)
T ss_pred cCCcccccchh---hHHHhhcCCCCccccchh-ccCchhccCCCeEEeecC-cccchhHHH--HHHHhccccccH
Confidence 2 222222211 245667785323444420 0001111 1478889993 333333333 6666553 3443
No 370
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=96.95 E-value=0.00048 Score=62.00 Aligned_cols=31 Identities=29% Similarity=0.428 Sum_probs=28.7
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEee
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMS 85 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs 85 (321)
-+++.|-||||||++|+.+|...|...|.|+
T Consensus 9 NILvtGTPG~GKstl~~~lae~~~~~~i~is 39 (176)
T KOG3347|consen 9 NILVTGTPGTGKSTLAERLAEKTGLEYIEIS 39 (176)
T ss_pred CEEEeCCCCCCchhHHHHHHHHhCCceEehh
Confidence 4689999999999999999999999999875
No 371
>PRK03846 adenylylsulfate kinase; Provisional
Probab=96.94 E-value=0.002 Score=57.40 Aligned_cols=58 Identities=21% Similarity=0.262 Sum_probs=40.3
Q ss_pred HhccccCCCCcHHHHHHHHHHHc---CCceEEeecccccccc-------CCCcHHHHHHHHHHHHhhh
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM---GIEPVIMSAGELESER-------AGEPGKLIRERYRTASQVV 112 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~---g~~~i~vs~~eL~s~~-------~GEser~IR~~F~~A~~~~ 112 (321)
.+.|.|+||||||+++++++..+ |...+.+.+-++-... ..+..+.++.+...|...+
T Consensus 26 ~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~ 93 (198)
T PRK03846 26 VLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVRHGLCSDLGFSDADRKENIRRVGEVAKLMV 93 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHHhhhhhcCCcCcccHHHHHHHHHHHHHHHh
Confidence 67899999999999999999987 5556777765543221 2334566666666666554
No 372
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=96.94 E-value=0.00092 Score=58.96 Aligned_cols=36 Identities=33% Similarity=0.470 Sum_probs=27.0
Q ss_pred HhccccCCCCcHHHHHHHHHHHcC-CceEEeeccccc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMG-IEPVIMSAGELE 90 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g-~~~i~vs~~eL~ 90 (321)
++||-||+|||||+++++++..++ -....++.-++.
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D~~~ 37 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDSYY 37 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCCCeEEEEecccc
Confidence 478999999999999999999873 234444444444
No 373
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=96.93 E-value=0.0026 Score=64.40 Aligned_cols=24 Identities=29% Similarity=0.383 Sum_probs=21.9
Q ss_pred HhccccCCCCcHHHHHHHHHHHcC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMG 78 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g 78 (321)
..+|.||+|||||++++++++...
T Consensus 363 ~vaIvG~SGsGKSTLl~lL~g~~~ 386 (529)
T TIGR02868 363 RVAILGPSGSGKSTLLMLLTGLLD 386 (529)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 889999999999999999997664
No 374
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.93 E-value=0.0026 Score=57.12 Aligned_cols=91 Identities=13% Similarity=0.168 Sum_probs=51.3
Q ss_pred hhhhhhccCccccchhhhhHhccccCCCCcHHHHHHHHHHHc---------CCceEEeeccccccc-c------------
Q 020787 36 TRSFEYLQGDYYIAPVFMASLCIWGGKGQGKSFQTELIFQAM---------GIEPVIMSAGELESE-R------------ 93 (321)
Q Consensus 36 ~~~~~~~~~~~~~~p~f~~iLgL~GPPGcGKTllaravA~e~---------g~~~i~vs~~eL~s~-~------------ 93 (321)
.+.++.+-+| .+|+. .+..|+||||||||.+|..+|... +-..+.++..+-.+. .
T Consensus 5 ~~~lD~~l~G-Gi~~g--~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~~~~~~~~~~ 81 (235)
T cd01123 5 SKALDELLGG-GIETG--SITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQIAERFGLDP 81 (235)
T ss_pred chhhHhhccC-CCCCC--eEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHHHHHHhccCh
Confidence 3445555444 22222 467899999999999999887553 245555555431110 0
Q ss_pred -----------CCCcHHHHHHHHHHHHhhhhhcCCceEEEeecccccC
Q 020787 94 -----------AGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGL 130 (321)
Q Consensus 94 -----------~GEser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~ 130 (321)
.-..+ .+.+.+....+......+|++|+||-|.+..
T Consensus 82 ~~~~~~i~~~~~~~~~-~l~~~l~~l~~~l~~~~~~~liVIDSis~~~ 128 (235)
T cd01123 82 EEVLDNIYVARAYNSD-HQLQLLEELEAILIESSRIKLVIVDSVTALF 128 (235)
T ss_pred HhHhcCEEEEecCCHH-HHHHHHHHHHHHHhhcCCeeEEEEeCcHHHH
Confidence 00011 1222333343344323389999999999864
No 375
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=96.93 E-value=0.0022 Score=57.06 Aligned_cols=22 Identities=27% Similarity=0.373 Sum_probs=21.2
Q ss_pred HhccccCCCCcHHHHHHHHHHH
Q 020787 55 SLCIWGGKGQGKSFQTELIFQA 76 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e 76 (321)
+++|.||+|||||+|.++++..
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 28 VHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 8999999999999999999987
No 376
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=96.92 E-value=0.0013 Score=56.36 Aligned_cols=46 Identities=28% Similarity=0.359 Sum_probs=32.0
Q ss_pred hccccCCCCcHHHHHHHHHHHc---CCceEEeeccccccccCCCcHHHHHHHHH
Q 020787 56 LCIWGGKGQGKSFQTELIFQAM---GIEPVIMSAGELESERAGEPGKLIRERYR 106 (321)
Q Consensus 56 LgL~GPPGcGKTllaravA~e~---g~~~i~vs~~eL~s~~~GEser~IR~~F~ 106 (321)
+.|-||+|+|||++++++++.+ |..++.+..+. +.+ ..+.+|+.+.
T Consensus 3 I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~~~~~--~~~---~~~~~~~~~~ 51 (200)
T cd01672 3 IVFEGIDGAGKTTLIELLAERLEARGYEVVLTREPG--GTP---IGEAIRELLL 51 (200)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCC--CCc---hHHHHHHHHh
Confidence 4678999999999999999988 66666554432 222 2355555543
No 377
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=96.92 E-value=0.00056 Score=61.94 Aligned_cols=31 Identities=16% Similarity=0.159 Sum_probs=25.3
Q ss_pred HhccccCCCCcHHHHHHHHHHHc-CCceEEee
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM-GIEPVIMS 85 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~-g~~~i~vs 85 (321)
+++|.|+||||||++|+.+++.+ ++.+|++.
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~~~~~~i~~D 32 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRILPNCCVIHQD 32 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCCeEEccc
Confidence 46899999999999999999998 45554433
No 378
>PRK09354 recA recombinase A; Provisional
Probab=96.91 E-value=0.0035 Score=62.22 Aligned_cols=97 Identities=12% Similarity=0.170 Sum_probs=54.3
Q ss_pred HHHHHhhhhhhccC-ccccchhhhhHhccccCCCCcHHHHHHHHHH---HcCCceEEeeccccccc-------------c
Q 020787 31 YRQKVTRSFEYLQG-DYYIAPVFMASLCIWGGKGQGKSFQTELIFQ---AMGIEPVIMSAGELESE-------------R 93 (321)
Q Consensus 31 ~~~~~~~~~~~~~~-~~~~~p~f~~iLgL~GPPGcGKTllaravA~---e~g~~~i~vs~~eL~s~-------------~ 93 (321)
..++....++.+-| | -+|+- .+..||||||||||+||-.++. ..|-..+-++.-+-.+. +
T Consensus 40 ~isTGi~~LD~~LG~G-Gip~G--~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~lGvdld~ll 116 (349)
T PRK09354 40 VISTGSLALDIALGIG-GLPRG--RIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLL 116 (349)
T ss_pred eecCCcHHHHHHhcCC-CCcCC--eEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHcCCCHHHeE
Confidence 44455556666544 2 22221 2667999999999999976553 33555555554331110 0
Q ss_pred CCCcHHHHHHHHHHHHhhhhhcCCceEEEeecccccCCC
Q 020787 94 AGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGR 132 (321)
Q Consensus 94 ~GEser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~~r 132 (321)
+=.+ ....+.+..+...++ .+++.+|+||=|-|+.+|
T Consensus 117 i~qp-~~~Eq~l~i~~~li~-s~~~~lIVIDSvaaL~~~ 153 (349)
T PRK09354 117 VSQP-DTGEQALEIADTLVR-SGAVDLIVVDSVAALVPK 153 (349)
T ss_pred EecC-CCHHHHHHHHHHHhh-cCCCCEEEEeChhhhcch
Confidence 0000 011223344444443 578999999999988765
No 379
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=96.90 E-value=0.00069 Score=63.75 Aligned_cols=66 Identities=20% Similarity=0.240 Sum_probs=40.2
Q ss_pred hhHhccccCCCCcHHHHHHHHHHHcCCceEEeeccccccccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeecccc
Q 020787 53 MASLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDA 128 (321)
Q Consensus 53 ~~iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDEIDA 128 (321)
|++.+|+||+|+|||-+|-++|++.|+++|+...--+.+...=-|+|-- ..+. ++-+- |++||--.
T Consensus 1 M~v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~~l~v~Sgrp~------~~el---~~~~R-iyL~~r~l 66 (233)
T PF01745_consen 1 MKVYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCYPELSVGSGRPT------PSEL---KGTRR-IYLDDRPL 66 (233)
T ss_dssp -EEEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-GGGTTTTT---------SGGG---TT-EE-EES----G
T ss_pred CcEEEEECCCCCChhHHHHHHHHHhCCCEEEecceecccccccccCCCC------HHHH---cccce-eeeccccc
Confidence 4467899999999999999999999999999999888887644455431 1122 44566 67775433
No 380
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.90 E-value=0.0049 Score=56.76 Aligned_cols=49 Identities=14% Similarity=0.076 Sum_probs=33.0
Q ss_pred HHhhhhhhccCccccchhhhhHhccccCCCCcHHHHHHHHHHHc----CCceEEeec
Q 020787 34 KVTRSFEYLQGDYYIAPVFMASLCIWGGKGQGKSFQTELIFQAM----GIEPVIMSA 86 (321)
Q Consensus 34 ~~~~~~~~~~~~~~~~p~f~~iLgL~GPPGcGKTllaravA~e~----g~~~i~vs~ 86 (321)
+.+..++.+.||++-- .+.+|.||||+|||.++..+|..+ |...+.++.
T Consensus 15 tg~~~Ld~~~gG~~~g----~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~ 67 (271)
T cd01122 15 WPFPVLNKLTKGLRKG----ELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISL 67 (271)
T ss_pred CCcceeeeeeEEEcCC----cEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEc
Confidence 3455566666654332 266799999999999988776553 655555554
No 381
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=96.89 E-value=0.0007 Score=59.54 Aligned_cols=32 Identities=22% Similarity=0.223 Sum_probs=28.3
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeec
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSA 86 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~ 86 (321)
.+.|.||+|+|||++++.+|+.+|++++....
T Consensus 6 ~I~liG~~GaGKStl~~~La~~l~~~~vd~D~ 37 (172)
T PRK05057 6 NIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ 37 (172)
T ss_pred EEEEECCCCcCHHHHHHHHHHHcCCcEEECCc
Confidence 46789999999999999999999999877654
No 382
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.89 E-value=0.00083 Score=59.86 Aligned_cols=35 Identities=23% Similarity=0.447 Sum_probs=27.2
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCC-ceEEeecccc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGI-EPVIMSAGEL 89 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~-~~i~vs~~eL 89 (321)
+++|.||||||||++++++++.++. ++..++..+.
T Consensus 8 iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~~ 43 (209)
T PRK05480 8 IIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDSY 43 (209)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCcc
Confidence 6899999999999999999999843 3344444433
No 383
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=96.88 E-value=0.001 Score=60.11 Aligned_cols=30 Identities=20% Similarity=0.241 Sum_probs=27.1
Q ss_pred hccccCCCCcHHHHHHHHHHHcCCceEEee
Q 020787 56 LCIWGGKGQGKSFQTELIFQAMGIEPVIMS 85 (321)
Q Consensus 56 LgL~GPPGcGKTllaravA~e~g~~~i~vs 85 (321)
+-|.|++|+|||++.+++|+.++.+|+=+.
T Consensus 5 IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D 34 (172)
T COG0703 5 IVLIGFMGAGKSTIGRALAKALNLPFIDTD 34 (172)
T ss_pred EEEEcCCCCCHhHHHHHHHHHcCCCcccch
Confidence 468899999999999999999999998654
No 384
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.88 E-value=0.00074 Score=51.04 Aligned_cols=31 Identities=29% Similarity=0.529 Sum_probs=24.4
Q ss_pred hccccCCCCcHHHHHHHHHHHc-CCceEEeec
Q 020787 56 LCIWGGKGQGKSFQTELIFQAM-GIEPVIMSA 86 (321)
Q Consensus 56 LgL~GPPGcGKTllaravA~e~-g~~~i~vs~ 86 (321)
++|.||||+|||++++++++.+ +.++..++.
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l~~~~~~~i~~ 33 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQLGGRSVVVLDE 33 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCCCEEEEeE
Confidence 5788999999999999999995 344444444
No 385
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.88 E-value=0.0018 Score=64.61 Aligned_cols=23 Identities=22% Similarity=0.317 Sum_probs=20.9
Q ss_pred HhccccCCCCcHHHHHHHHHHHc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM 77 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~ 77 (321)
+++|.||+|+|||+++..+|..+
T Consensus 139 ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 139 VFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 88899999999999999998763
No 386
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=96.86 E-value=0.0019 Score=61.84 Aligned_cols=23 Identities=17% Similarity=0.398 Sum_probs=21.7
Q ss_pred HhccccCCCCcHHHHHHHHHHHc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM 77 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~ 77 (321)
+++|.||+|+|||++.++++...
T Consensus 35 i~gllGpNGaGKSTLl~~l~Gl~ 57 (306)
T PRK13537 35 CFGLLGPNGAGKTTTLRMLLGLT 57 (306)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 89999999999999999999865
No 387
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=96.86 E-value=0.0035 Score=53.24 Aligned_cols=26 Identities=19% Similarity=0.272 Sum_probs=22.5
Q ss_pred hccccCCCCcHHHHHHHHHHHcCCce
Q 020787 56 LCIWGGKGQGKSFQTELIFQAMGIEP 81 (321)
Q Consensus 56 LgL~GPPGcGKTllaravA~e~g~~~ 81 (321)
+.|.||+|||||+++++++++....+
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~~~~ 27 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFDPNF 27 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCCccc
Confidence 57899999999999999999876543
No 388
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.86 E-value=0.0037 Score=56.81 Aligned_cols=24 Identities=25% Similarity=0.242 Sum_probs=20.9
Q ss_pred hccccCCCCcHHHHHHHHHHHcCC
Q 020787 56 LCIWGGKGQGKSFQTELIFQAMGI 79 (321)
Q Consensus 56 LgL~GPPGcGKTllaravA~e~g~ 79 (321)
+++.||||.|||++|.-+|..+.-
T Consensus 8 i~ITG~PGvGKtTl~~ki~e~L~~ 31 (179)
T COG1618 8 IFITGRPGVGKTTLVLKIAEKLRE 31 (179)
T ss_pred EEEeCCCCccHHHHHHHHHHHHHh
Confidence 578999999999999999976643
No 389
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.85 E-value=0.006 Score=55.99 Aligned_cols=47 Identities=19% Similarity=0.310 Sum_probs=29.6
Q ss_pred hhhhhhc-cCccccchhhhhHhccccCCCCcHHHHHHHHHHH---cCCceEEeec
Q 020787 36 TRSFEYL-QGDYYIAPVFMASLCIWGGKGQGKSFQTELIFQA---MGIEPVIMSA 86 (321)
Q Consensus 36 ~~~~~~~-~~~~~~~p~f~~iLgL~GPPGcGKTllaravA~e---~g~~~i~vs~ 86 (321)
...++.+ .||+.- . ...+|+||||||||.+|-.++.+ .|-+.+.++.
T Consensus 7 i~~LD~~l~GG~~~-g---s~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ 57 (237)
T TIGR03877 7 IPGMDEILHGGIPE-R---NVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVAL 57 (237)
T ss_pred cHhHHHHhcCCCcC-C---eEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEe
Confidence 3445553 455432 1 46789999999999999754433 3555555553
No 390
>PLN02459 probable adenylate kinase
Probab=96.85 E-value=0.00065 Score=64.85 Aligned_cols=35 Identities=23% Similarity=0.349 Sum_probs=29.2
Q ss_pred hccccCCCCcHHHHHHHHHHHcCCceEEeeccccccc
Q 020787 56 LCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESE 92 (321)
Q Consensus 56 LgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~ 92 (321)
+.|.||||+|||++|+.+|+.+| +.+++.++++..
T Consensus 32 ii~~G~PGsGK~T~a~~la~~~~--~~~is~gdllR~ 66 (261)
T PLN02459 32 WVFLGCPGVGKGTYASRLSKLLG--VPHIATGDLVRE 66 (261)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC--CcEEeCcHHHHH
Confidence 55679999999999999999997 566777877754
No 391
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=96.85 E-value=0.0022 Score=65.82 Aligned_cols=25 Identities=24% Similarity=0.361 Sum_probs=22.8
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGI 79 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~ 79 (321)
.++|.||.|||||+|++++++....
T Consensus 369 ~iaIvG~SGsGKSTLl~lL~gl~~p 393 (592)
T PRK10790 369 FVALVGHTGSGKSTLASLLMGYYPL 393 (592)
T ss_pred EEEEECCCCCCHHHHHHHHhcccCC
Confidence 8999999999999999999987754
No 392
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.85 E-value=0.0007 Score=60.59 Aligned_cols=25 Identities=32% Similarity=0.581 Sum_probs=23.1
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGI 79 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~ 79 (321)
+++|.||+|||||+++++++..+..
T Consensus 8 vi~I~G~sGsGKSTl~~~l~~~l~~ 32 (207)
T TIGR00235 8 IIGIGGGSGSGKTTVARKIYEQLGK 32 (207)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcc
Confidence 6899999999999999999998874
No 393
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.84 E-value=0.00053 Score=60.79 Aligned_cols=25 Identities=24% Similarity=0.294 Sum_probs=23.1
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGI 79 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~ 79 (321)
|+||.||||+|||++|+.++..++.
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~ 25 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNK 25 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCc
Confidence 5799999999999999999999984
No 394
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=96.84 E-value=0.00071 Score=59.98 Aligned_cols=33 Identities=24% Similarity=0.338 Sum_probs=27.3
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeecccc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGEL 89 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL 89 (321)
+++|.||+|||||+++++++..++. +.+.+.++
T Consensus 5 ~i~l~G~sGsGKSTl~~~la~~l~~--~~i~gd~~ 37 (176)
T PRK09825 5 SYILMGVSGSGKSLIGSKIAALFSA--KFIDGDDL 37 (176)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCC--EEECCccc
Confidence 5789999999999999999999987 34555544
No 395
>PRK08356 hypothetical protein; Provisional
Probab=96.83 E-value=0.00082 Score=59.70 Aligned_cols=33 Identities=15% Similarity=0.141 Sum_probs=26.5
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeeccccc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELE 90 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~ 90 (321)
+++|.||||+|||++|+.++ +.|+. +++.++..
T Consensus 7 ~i~~~G~~gsGK~t~a~~l~-~~g~~--~is~~~~~ 39 (195)
T PRK08356 7 IVGVVGKIAAGKTTVAKFFE-EKGFC--RVSCSDPL 39 (195)
T ss_pred EEEEECCCCCCHHHHHHHHH-HCCCc--EEeCCCcc
Confidence 46899999999999999996 57765 56666644
No 396
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=96.82 E-value=0.00083 Score=59.13 Aligned_cols=49 Identities=16% Similarity=0.287 Sum_probs=34.4
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeeccccccccCCCcH---HHHHHHH
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPG---KLIRERY 105 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~~~GEse---r~IR~~F 105 (321)
++||.|++|||||++++.++...|+++ +++.++.....-.++ +.|.+.|
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~~~~~~--i~~D~~~~~~~~~~~~~~~~i~~~f 52 (188)
T TIGR00152 1 IIGLTGGIGSGKSTVANYLADKYHFPV--IDADKIAHQVVEKGSPAYEKIVDHF 52 (188)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCeE--EeCCHHHHHHHhcCChHHHHHHHHH
Confidence 578999999999999999999876665 455666555443333 3344444
No 397
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=96.81 E-value=0.0021 Score=66.04 Aligned_cols=24 Identities=29% Similarity=0.455 Sum_probs=22.1
Q ss_pred HhccccCCCCcHHHHHHHHHHHcC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMG 78 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g 78 (321)
+++|.||+|||||+|++++++...
T Consensus 363 ~v~IvG~sGsGKSTLl~lL~gl~~ 386 (588)
T PRK13657 363 TVAIVGPTGAGKSTLINLLQRVFD 386 (588)
T ss_pred EEEEECCCCCCHHHHHHHHhcCcC
Confidence 899999999999999999997764
No 398
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=96.81 E-value=0.00093 Score=58.28 Aligned_cols=24 Identities=21% Similarity=0.221 Sum_probs=21.0
Q ss_pred ccCCCCcHHHHHHHHHHHcCCceE
Q 020787 59 WGGKGQGKSFQTELIFQAMGIEPV 82 (321)
Q Consensus 59 ~GPPGcGKTllaravA~e~g~~~i 82 (321)
.||||||||++++++++.+|..++
T Consensus 1 ~G~sGsGKSTla~~la~~l~~~~~ 24 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQLHAAFL 24 (163)
T ss_pred CCCCCCcHHHHHHHHHHHhCCeEE
Confidence 399999999999999999986443
No 399
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.81 E-value=0.0063 Score=54.08 Aligned_cols=36 Identities=22% Similarity=0.230 Sum_probs=29.7
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeeccccc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELE 90 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~ 90 (321)
+.++.||||+|||.+|...+.+.+.+.+.+.-++-.
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~ 36 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAELGGPVTYIATAEAF 36 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCeEEEEccCcC
Confidence 357899999999999999999988788777665443
No 400
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=96.81 E-value=0.00076 Score=61.29 Aligned_cols=34 Identities=24% Similarity=0.216 Sum_probs=28.0
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeeccccc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELE 90 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~ 90 (321)
++++.|+||+|||++|+.+|.++|+.. +..++++
T Consensus 5 ~i~i~G~~G~GKst~a~~l~~~~~~~~--~~~~D~~ 38 (197)
T PRK12339 5 IHFIGGIPGVGKTSISGYIARHRAIDI--VLSGDYL 38 (197)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCeE--EehhHHH
Confidence 568999999999999999999998754 4555544
No 401
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=96.80 E-value=0.00057 Score=63.29 Aligned_cols=23 Identities=22% Similarity=0.366 Sum_probs=19.4
Q ss_pred HhccccCCCCcHHHHHHHHHHHc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM 77 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~ 77 (321)
-|+|+||||||||++|+++..-+
T Consensus 24 ~lLl~GppGtGKTmlA~~l~~lL 46 (206)
T PF01078_consen 24 HLLLIGPPGTGKTMLARRLPSLL 46 (206)
T ss_dssp -EEEES-CCCTHHHHHHHHHHCS
T ss_pred CeEEECCCCCCHHHHHHHHHHhC
Confidence 78999999999999999999764
No 402
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=96.80 E-value=0.0027 Score=56.64 Aligned_cols=38 Identities=26% Similarity=0.357 Sum_probs=30.4
Q ss_pred HhccccCCCCcHHHHHHHHHHHc-CCceEEeeccccccc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM-GIEPVIMSAGELESE 92 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~-g~~~i~vs~~eL~s~ 92 (321)
.+.|.||||||||++++.+..++ +-.++.+++-++-..
T Consensus 17 ~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~~ 55 (199)
T PF06414_consen 17 LIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQF 55 (199)
T ss_dssp EEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGGG
T ss_pred EEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHHh
Confidence 57789999999999999999999 889999998776543
No 403
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=96.79 E-value=0.00071 Score=58.51 Aligned_cols=23 Identities=35% Similarity=0.582 Sum_probs=21.1
Q ss_pred HhccccCCCCcHHHHHHHHHHHc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM 77 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~ 77 (321)
.|-+|||||||||+.++.+|+.+
T Consensus 55 VlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 55 VLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred EEEeecCCCCcHHHHHHHHHHHH
Confidence 78899999999999999999873
No 404
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=96.78 E-value=0.001 Score=63.90 Aligned_cols=31 Identities=23% Similarity=0.410 Sum_probs=28.5
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEee
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMS 85 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs 85 (321)
.++|.|+||||||++++.+|+++|++|+.+.
T Consensus 135 ~I~l~G~~GsGKStvg~~La~~Lg~~~id~D 165 (309)
T PRK08154 135 RIALIGLRGAGKSTLGRMLAARLGVPFVELN 165 (309)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCEEeHH
Confidence 7899999999999999999999999999433
No 405
>PRK13764 ATPase; Provisional
Probab=96.77 E-value=0.0013 Score=69.40 Aligned_cols=36 Identities=22% Similarity=0.301 Sum_probs=29.0
Q ss_pred Cccccchhhhh-------HhccccCCCCcHHHHHHHHHHHcCC
Q 020787 44 GDYYIAPVFMA-------SLCIWGGKGQGKSFQTELIFQAMGI 79 (321)
Q Consensus 44 ~~~~~~p~f~~-------iLgL~GPPGcGKTllaravA~e~g~ 79 (321)
++|-.||.+++ .+++.||||||||++++|++..+.-
T Consensus 241 e~l~l~~~l~~~l~~~~~~ILIsG~TGSGKTTll~AL~~~i~~ 283 (602)
T PRK13764 241 EDYNLSEKLKERLEERAEGILIAGAPGAGKSTFAQALAEFYAD 283 (602)
T ss_pred HHhCCCHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 35556776665 6789999999999999999988753
No 406
>PRK13808 adenylate kinase; Provisional
Probab=96.75 E-value=0.00081 Score=66.26 Aligned_cols=35 Identities=34% Similarity=0.559 Sum_probs=29.4
Q ss_pred hccccCCCCcHHHHHHHHHHHcCCceEEeeccccccc
Q 020787 56 LCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESE 92 (321)
Q Consensus 56 LgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~ 92 (321)
++|+||||+|||++|+.+|...|+ .+++.+||+..
T Consensus 3 Iiv~GpPGSGK~T~a~~LA~~ygl--~~is~gdlLR~ 37 (333)
T PRK13808 3 LILLGPPGAGKGTQAQRLVQQYGI--VQLSTGDMLRA 37 (333)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCC--ceecccHHHHH
Confidence 578999999999999999999986 56666777643
No 407
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=96.75 E-value=0.00059 Score=62.15 Aligned_cols=32 Identities=28% Similarity=0.475 Sum_probs=28.2
Q ss_pred hccccCCCCcHHHHHHHHHHHcCCceEEeeccccc
Q 020787 56 LCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELE 90 (321)
Q Consensus 56 LgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~ 90 (321)
.+|.|.||||||+.|+.++ ++|.+.+.++ ++.
T Consensus 3 I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~--el~ 34 (180)
T COG1936 3 IAITGTPGVGKTTVCKLLR-ELGYKVIELN--ELA 34 (180)
T ss_pred EEEeCCCCCchHHHHHHHH-HhCCceeeHH--HHH
Confidence 4789999999999999999 9999988876 554
No 408
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=96.74 E-value=0.0028 Score=66.61 Aligned_cols=24 Identities=29% Similarity=0.466 Sum_probs=21.9
Q ss_pred HhccccCCCCcHHHHHHHHHHHcC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMG 78 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g 78 (321)
.++|.||.|||||+|++++++...
T Consensus 507 ~vaIvG~sGsGKSTLlklL~gl~~ 530 (710)
T TIGR03796 507 RVALVGGSGSGKSTIAKLVAGLYQ 530 (710)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 889999999999999999997763
No 409
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=96.74 E-value=0.0021 Score=61.88 Aligned_cols=68 Identities=15% Similarity=0.319 Sum_probs=43.3
Q ss_pred HhccccCCCCcHHHHHHHHHHHcC-----CceEEeec-cccc-------cccCCCcHHHHHHHHHHHHhhhhhcCCceEE
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMG-----IEPVIMSA-GELE-------SERAGEPGKLIRERYRTASQVVQNQGKMSCL 121 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g-----~~~i~vs~-~eL~-------s~~~GEser~IR~~F~~A~~~~~~~gaPcIL 121 (321)
.+++.||+|+|||+++++++.... -.++.+.- .|+. .-..++....+.++.+.|.. ..|..|
T Consensus 134 ~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~~~~~~~~~~~~~~l~~aLR-----~~pD~i 208 (299)
T TIGR02782 134 NILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQLRTSDDAISMTRLLKATLR-----LRPDRI 208 (299)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEEEEecCCCCCHHHHHHHHhc-----CCCCEE
Confidence 667999999999999999998862 33333322 1221 11122222245556666653 489999
Q ss_pred Eeeccc
Q 020787 122 MINDID 127 (321)
Q Consensus 122 FIDEID 127 (321)
++.||=
T Consensus 209 ivGEiR 214 (299)
T TIGR02782 209 IVGEVR 214 (299)
T ss_pred EEeccC
Confidence 999984
No 410
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=96.73 E-value=0.0022 Score=65.75 Aligned_cols=23 Identities=17% Similarity=0.355 Sum_probs=21.6
Q ss_pred HhccccCCCCcHHHHHHHHHHHc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM 77 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~ 77 (321)
..+|.||+|||||++++++++..
T Consensus 378 ~vaIvG~SGsGKSTL~~lL~g~~ 400 (588)
T PRK11174 378 RIALVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 88999999999999999999875
No 411
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=96.73 E-value=0.0092 Score=53.69 Aligned_cols=32 Identities=22% Similarity=0.192 Sum_probs=22.5
Q ss_pred HhccccCCCCcHHHHHHHHHHHc----CCceEEeec
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM----GIEPVIMSA 86 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~----g~~~i~vs~ 86 (321)
+.+|.||||+|||++|...+.+. |-+.+.++-
T Consensus 21 ~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ 56 (226)
T PF06745_consen 21 VVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSF 56 (226)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEES
T ss_pred EEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEe
Confidence 67899999999999997654322 666655554
No 412
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=96.73 E-value=0.0012 Score=58.58 Aligned_cols=37 Identities=24% Similarity=0.357 Sum_probs=29.9
Q ss_pred HhccccCCCCcHHHHHHHHHHHcC---CceEEeecccccc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMG---IEPVIMSAGELES 91 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g---~~~i~vs~~eL~s 91 (321)
+++|.|+||||||++|+.+++.++ .+...++.-++..
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~ 40 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYV 40 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhccc
Confidence 468999999999999999999974 5566676666664
No 413
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.70 E-value=0.00093 Score=58.85 Aligned_cols=35 Identities=14% Similarity=0.173 Sum_probs=27.3
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeeccccc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELE 90 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~ 90 (321)
++.|.||+|||||+++++++...+..+ .++...+.
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~~~~~~-~~~~~~~~ 38 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQREQTQL-LVAHRYIT 38 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCeE-EEcCEECC
Confidence 567999999999999999999988653 44444443
No 414
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.69 E-value=0.0089 Score=56.02 Aligned_cols=31 Identities=23% Similarity=0.244 Sum_probs=22.3
Q ss_pred HhccccCCCCcHHHHHHHHHHH---cCCceEEee
Q 020787 55 SLCIWGGKGQGKSFQTELIFQA---MGIEPVIMS 85 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e---~g~~~i~vs 85 (321)
+.+|+||||||||.+|-.+|.+ .|-+.+.++
T Consensus 38 ~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis 71 (259)
T TIGR03878 38 VINITGVSDTGKSLMVEQFAVTQASRGNPVLFVT 71 (259)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEE
Confidence 6789999999999999876553 244444444
No 415
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.68 E-value=0.001 Score=53.09 Aligned_cols=21 Identities=24% Similarity=0.281 Sum_probs=20.2
Q ss_pred ccccCCCCcHHHHHHHHHHHc
Q 020787 57 CIWGGKGQGKSFQTELIFQAM 77 (321)
Q Consensus 57 gL~GPPGcGKTllaravA~e~ 77 (321)
+|.|+||+|||++|+.+++++
T Consensus 2 ~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 2 GISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEESTTSSHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHH
Confidence 689999999999999999998
No 416
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=96.68 E-value=0.0015 Score=59.99 Aligned_cols=38 Identities=24% Similarity=0.382 Sum_probs=30.3
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeeccccccccC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERA 94 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~~~ 94 (321)
++||.|++|||||+.++.++.++|+++ +++-.+.....
T Consensus 8 ~IglTG~iGsGKStv~~~l~~~lg~~v--idaD~i~~~l~ 45 (204)
T PRK14733 8 PIGITGGIASGKSTATRILKEKLNLNV--VCADTISREIT 45 (204)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeE--EeccHHHHHHH
Confidence 689999999999999999999999885 44444444433
No 417
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=96.67 E-value=0.0024 Score=55.91 Aligned_cols=28 Identities=29% Similarity=0.392 Sum_probs=24.0
Q ss_pred hccccCCCCcHHHHHHHHHHHcCCceEE
Q 020787 56 LCIWGGKGQGKSFQTELIFQAMGIEPVI 83 (321)
Q Consensus 56 LgL~GPPGcGKTllaravA~e~g~~~i~ 83 (321)
+.+-|++|||||++++++++.+|+.++.
T Consensus 2 I~ieG~~GsGKSTl~~~L~~~~~~~~~~ 29 (193)
T cd01673 2 IVVEGNIGAGKSTLAKELAEHLGYEVVP 29 (193)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcccc
Confidence 4578999999999999999998876553
No 418
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=96.66 E-value=0.017 Score=52.90 Aligned_cols=20 Identities=25% Similarity=0.197 Sum_probs=17.6
Q ss_pred ccccCCCCcHHHHHHHHHHH
Q 020787 57 CIWGGKGQGKSFQTELIFQA 76 (321)
Q Consensus 57 gL~GPPGcGKTllaravA~e 76 (321)
+|.||||+|||+++-.+|..
T Consensus 5 ll~g~~G~GKS~lal~la~~ 24 (239)
T cd01125 5 ALVAPGGTGKSSLLLVLALA 24 (239)
T ss_pred EEEcCCCCCHHHHHHHHHHH
Confidence 58999999999999888764
No 419
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.64 E-value=0.0046 Score=57.29 Aligned_cols=21 Identities=24% Similarity=0.067 Sum_probs=19.5
Q ss_pred HhccccCCCCcHHHHHHHHHH
Q 020787 55 SLCIWGGKGQGKSFQTELIFQ 75 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~ 75 (321)
+++|.||+|+|||.+.+.++.
T Consensus 33 ~~~itG~N~~GKStll~~i~~ 53 (222)
T cd03287 33 CQIITGPNMGGKSSYIRQVAL 53 (222)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999999887
No 420
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.64 E-value=0.0011 Score=57.37 Aligned_cols=26 Identities=27% Similarity=0.482 Sum_probs=24.5
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIE 80 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~ 80 (321)
+++|.|+.|||||++++++++.+|+.
T Consensus 24 ~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 24 VVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 78899999999999999999999975
No 421
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=96.63 E-value=0.0023 Score=61.37 Aligned_cols=68 Identities=12% Similarity=0.224 Sum_probs=43.4
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCc--eEEee-ccccccc---c---------CCCcHHHHHHHHHHHHhhhhhcCCce
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIE--PVIMS-AGELESE---R---------AGEPGKLIRERYRTASQVVQNQGKMS 119 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~--~i~vs-~~eL~s~---~---------~GEser~IR~~F~~A~~~~~~~gaPc 119 (321)
.+++.||+|+|||+++++++..+.-. .+.+. ..|+.-. + .|.++-.+.++++.|.. ..|.
T Consensus 146 ~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied~~El~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~Lr-----~~pd 220 (308)
T TIGR02788 146 NIIISGGTGSGKTTFLKSLVDEIPKDERIITIEDTREIFLPHPNYVHLFYSKGGQGLAKVTPKDLLQSCLR-----MRPD 220 (308)
T ss_pred EEEEECCCCCCHHHHHHHHHccCCccccEEEEcCccccCCCCCCEEEEEecCCCCCcCccCHHHHHHHHhc-----CCCC
Confidence 78999999999999999999876432 22221 1122110 0 12223345566666653 4899
Q ss_pred EEEeeccc
Q 020787 120 CLMINDID 127 (321)
Q Consensus 120 ILFIDEID 127 (321)
+|++||+=
T Consensus 221 ~ii~gE~r 228 (308)
T TIGR02788 221 RIILGELR 228 (308)
T ss_pred eEEEeccC
Confidence 99999985
No 422
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=96.61 E-value=0.0048 Score=62.79 Aligned_cols=89 Identities=17% Similarity=0.142 Sum_probs=50.7
Q ss_pred HHhhhhhhccCccccchhhhhHhccccCCCCcHHHHHHHHHHHc---CCceEEeecccccccc------CCCc-------
Q 020787 34 KVTRSFEYLQGDYYIAPVFMASLCIWGGKGQGKSFQTELIFQAM---GIEPVIMSAGELESER------AGEP------- 97 (321)
Q Consensus 34 ~~~~~~~~~~~~~~~~p~f~~iLgL~GPPGcGKTllaravA~e~---g~~~i~vs~~eL~s~~------~GEs------- 97 (321)
+....|+.+-||= ++|. .+.+|.|+||+|||+++..+|... |-..+.+++-|-.+.. .|-.
T Consensus 78 TGi~~LD~vLgGG-i~~G--svilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~rlg~~~~~l~~~ 154 (454)
T TIGR00416 78 SGFGELDRVLGGG-IVPG--SLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIRLGLPEPNLYVL 154 (454)
T ss_pred cCcHHHHHHhcCC-ccCC--eEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHHcCCChHHeEEc
Confidence 3455566665432 2221 256899999999999999887654 3456667764332211 0100
Q ss_pred -HHHHHHHHHHHHhhhhhcCCceEEEeecccccC
Q 020787 98 -GKLIRERYRTASQVVQNQGKMSCLMINDIDAGL 130 (321)
Q Consensus 98 -er~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~ 130 (321)
+..+-++...+. +.+|.+|+||-|-+..
T Consensus 155 ~e~~~~~I~~~i~-----~~~~~~vVIDSIq~l~ 183 (454)
T TIGR00416 155 SETNWEQICANIE-----EENPQACVIDSIQTLY 183 (454)
T ss_pred CCCCHHHHHHHHH-----hcCCcEEEEecchhhc
Confidence 001112222222 3479999999998864
No 423
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=96.60 E-value=0.0013 Score=60.34 Aligned_cols=24 Identities=21% Similarity=0.256 Sum_probs=22.1
Q ss_pred HhccccCCCCcHHHHHHHHHHHcC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMG 78 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g 78 (321)
|+||-||+|+|||++|+.++..+.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHh
Confidence 579999999999999999999884
No 424
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=96.60 E-value=0.0053 Score=63.41 Aligned_cols=163 Identities=19% Similarity=0.281 Sum_probs=98.5
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCC---c--eEEeecc--------------ccccccCCCc-HHHHHHHHHHHHhhhhh
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGI---E--PVIMSAG--------------ELESERAGEP-GKLIRERYRTASQVVQN 114 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~---~--~i~vs~~--------------eL~s~~~GEs-er~IR~~F~~A~~~~~~ 114 (321)
.|-+.|-||+|||.+..-+-..... . .+.++.- ++++.-.|.+ ++..-+.|.. +.+.
T Consensus 177 SlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~~~~~q~~~s~~~~~~~~~~~~~---h~~q 253 (529)
T KOG2227|consen 177 SLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIFSSLLQDLVSPGTGMQHLEKFEK---HTKQ 253 (529)
T ss_pred ceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHHHHHHHHHhcCCchhHHHHHHHHH---HHhc
Confidence 4456799999999988755544332 2 2334443 2322223332 3333344443 3332
Q ss_pred cCCceEEEeecccccCCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccccCCCCC
Q 020787 115 QGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDG 194 (321)
Q Consensus 115 ~gaPcILFIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpALlRpG 194 (321)
...|=+|.+||+|-++.|. |.| |.++ . +|...+ +.+...|+-+|-.|.=|-.|.|-
T Consensus 254 ~k~~~llVlDEmD~L~tr~---------~~v---Ly~l-F---------ewp~lp-~sr~iLiGiANslDlTdR~LprL- 309 (529)
T KOG2227|consen 254 SKFMLLLVLDEMDHLITRS---------QTV---LYTL-F---------EWPKLP-NSRIILIGIANSLDLTDRFLPRL- 309 (529)
T ss_pred ccceEEEEechhhHHhhcc---------cce---eeee-h---------hcccCC-cceeeeeeehhhhhHHHHHhhhh-
Confidence 2359999999999988442 112 2211 1 365554 56778888889988888877774
Q ss_pred CCcce------ecCC-CHHHHHHHHHHHhhcCCCC---HHHHHHhhhCCCCCcchhhHHH
Q 020787 195 RMEKF------YWQP-NLEDILNIVHRMYEKDGIT---KDEVGSIVKTFPNQALDFYGAL 244 (321)
Q Consensus 195 RfDr~------i~~P-d~~~R~~Il~~~~~~~~l~---~~dl~~L~d~f~gq~idf~gAl 244 (321)
+.|.. .|.| +.++..+||+.-+...+.+ ...++-.+..-++.+-|.=-||
T Consensus 310 ~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaL 369 (529)
T KOG2227|consen 310 NLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKAL 369 (529)
T ss_pred hhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHH
Confidence 44442 2346 8899999999888776543 2456666666666655554444
No 425
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=96.60 E-value=0.0018 Score=57.92 Aligned_cols=37 Identities=27% Similarity=0.464 Sum_probs=29.5
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeeccccccccC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERA 94 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~~~ 94 (321)
++||.||+|||||++++.+++ +|++ ++++.++.....
T Consensus 4 ~i~ltG~~gsGKst~~~~l~~-~g~~--~i~~D~~~~~~~ 40 (194)
T PRK00081 4 IIGLTGGIGSGKSTVANLFAE-LGAP--VIDADAIAHEVV 40 (194)
T ss_pred EEEEECCCCCCHHHHHHHHHH-cCCE--EEEecHHHHHHh
Confidence 579999999999999999988 8865 456666665544
No 426
>COG1485 Predicted ATPase [General function prediction only]
Probab=96.59 E-value=0.0083 Score=59.93 Aligned_cols=105 Identities=17% Similarity=0.373 Sum_probs=64.3
Q ss_pred hhhhhHhccccCCCCcHHHHHHHHHHHcCCce-EEee--------ccccccccCCCcHHHHHHHHHHHHhhhhhcCCceE
Q 020787 50 PVFMASLCIWGGKGQGKSFQTELIFQAMGIEP-VIMS--------AGELESERAGEPGKLIRERYRTASQVVQNQGKMSC 120 (321)
Q Consensus 50 p~f~~iLgL~GPPGcGKTllaravA~e~g~~~-i~vs--------~~eL~s~~~GEser~IR~~F~~A~~~~~~~gaPcI 120 (321)
+.....|-||||=|||||+|.-+....+-.+- ..+- =.++ ..+.|++. =+.--|.+.+ +.--+
T Consensus 62 ~~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~~~k~R~HFh~FM~~vH~~l-~~l~g~~d----pl~~iA~~~~---~~~~v 133 (367)
T COG1485 62 HGPVRGLYLWGGVGRGKTMLMDLFYESLPGERKRRLHFHRFMARVHQRL-HTLQGQTD----PLPPIADELA---AETRV 133 (367)
T ss_pred CCCCceEEEECCCCccHHHHHHHHHhhCCccccccccHHHHHHHHHHHH-HHHcCCCC----ccHHHHHHHH---hcCCE
Confidence 44556888999999999999999887765532 0010 0111 11234441 1223344443 25678
Q ss_pred EEeecccccCCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCC-CCcc
Q 020787 121 LMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDF-STIY 187 (321)
Q Consensus 121 LFIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp-~~LD 187 (321)
|.|||.-- .+..+-|+.++|++.|= .++|.+++|.|.+ +.|+
T Consensus 134 LCfDEF~V---------tDI~DAMiL~rL~~~Lf----------------~~GV~lvaTSN~~P~~LY 176 (367)
T COG1485 134 LCFDEFEV---------TDIADAMILGRLLEALF----------------ARGVVLVATSNTAPDNLY 176 (367)
T ss_pred EEeeeeee---------cChHHHHHHHHHHHHHH----------------HCCcEEEEeCCCChHHhc
Confidence 88999764 13345688888887653 2478899998864 4444
No 427
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=96.59 E-value=0.0049 Score=66.89 Aligned_cols=94 Identities=14% Similarity=0.132 Sum_probs=52.9
Q ss_pred HHHHHhhhhhhccCccccchhhhhHhccccCCCCcHHHHHHHHHH---HcCCceEEeecccccc----------------
Q 020787 31 YRQKVTRSFEYLQGDYYIAPVFMASLCIWGGKGQGKSFQTELIFQ---AMGIEPVIMSAGELES---------------- 91 (321)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~p~f~~iLgL~GPPGcGKTllaravA~---e~g~~~i~vs~~eL~s---------------- 91 (321)
..++..-.++.+-|+=-+|+ -.+..|+||||||||++|-.++. ..|-..+-++..+-++
T Consensus 40 ~isTGi~~LD~lLg~GGip~--GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~~~~~A~~lGvDl~~llv 117 (790)
T PRK09519 40 VIPTGSIALDVALGIGGLPR--GRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLV 117 (790)
T ss_pred eecCCcHHHHHhhcCCCccC--CeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchhHHHHHHcCCChhHeEE
Confidence 33444555555443111222 23566999999999999954332 3344445555444222
Q ss_pred --ccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeecccccCCCC
Q 020787 92 --ERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRF 133 (321)
Q Consensus 92 --~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~~r~ 133 (321)
... +|. .+..+.+.++ .++|.+|+||-|-+..+|.
T Consensus 118 ~~~~~--~E~----~l~~i~~lv~-~~~~~LVVIDSI~aL~~r~ 154 (790)
T PRK09519 118 SQPDT--GEQ----ALEIADMLIR-SGALDIVVIDSVAALVPRA 154 (790)
T ss_pred ecCCC--HHH----HHHHHHHHhh-cCCCeEEEEcchhhhcchh
Confidence 111 122 3333444443 5689999999999988753
No 428
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=96.56 E-value=0.0014 Score=60.27 Aligned_cols=34 Identities=24% Similarity=0.379 Sum_probs=28.4
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeeccccc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELE 90 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~ 90 (321)
++.|-||+|||||++++++|+++++.++ +.+++.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~~~~~~~--~~g~~~ 37 (217)
T TIGR00017 4 IIAIDGPSGAGKSTVAKAVAEKLGYAYL--DSGAMY 37 (217)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcee--eCchHH
Confidence 4689999999999999999999998766 455443
No 429
>PF14516 AAA_35: AAA-like domain
Probab=96.56 E-value=0.008 Score=58.31 Aligned_cols=75 Identities=17% Similarity=0.208 Sum_probs=47.9
Q ss_pred HhccccCCCCcHHHHHHHHHHHc---CCceEEeeccccccccCCCcHHHH------------------------------
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM---GIEPVIMSAGELESERAGEPGKLI------------------------------ 101 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~---g~~~i~vs~~eL~s~~~GEser~I------------------------------ 101 (321)
-..|+||..+|||++...+.+.+ |...+.++-..+-+...-..++.+
T Consensus 33 ~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~ 112 (331)
T PF14516_consen 33 YIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIGSKIS 112 (331)
T ss_pred EEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcCChhh
Confidence 35799999999999997776544 677777776555443322223222
Q ss_pred -HHHHHHHHhhhhhcCCceEEEeecccccCC
Q 020787 102 -RERYRTASQVVQNQGKMSCLMINDIDAGLG 131 (321)
Q Consensus 102 -R~~F~~A~~~~~~~gaPcILFIDEIDAg~~ 131 (321)
...|++.. .+...+|=||||||||++..
T Consensus 113 ~~~~~~~~l--l~~~~~~lVL~iDEiD~l~~ 141 (331)
T PF14516_consen 113 CTEYFEEYL--LKQIDKPLVLFIDEIDRLFE 141 (331)
T ss_pred HHHHHHHHH--HhcCCCCEEEEEechhhhcc
Confidence 22233211 11235899999999999875
No 430
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=96.55 E-value=0.0015 Score=58.18 Aligned_cols=121 Identities=18% Similarity=0.096 Sum_probs=55.8
Q ss_pred HhccccCCCCcHHHHHHHH-HH---HcCCceEEeecccc----ccccCCCcHH--HH----------HHHHHHHHhhhhh
Q 020787 55 SLCIWGGKGQGKSFQTELI-FQ---AMGIEPVIMSAGEL----ESERAGEPGK--LI----------RERYRTASQVVQN 114 (321)
Q Consensus 55 iLgL~GPPGcGKTllarav-A~---e~g~~~i~vs~~eL----~s~~~GEser--~I----------R~~F~~A~~~~~~ 114 (321)
|.+++|.||.|||+.|-.. .. +-|-.++. +-.+| ..++.+..-+ ++ .+.+..-...
T Consensus 2 I~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~t-ni~gL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 77 (193)
T PF05707_consen 2 IYLITGKPGSGKSYYAVSYVIIPALKKGRPVYT-NIPGLNIEKIQPVLGYDIPTRLIDLSDPDFEEDWDDPDDWRKL--- 77 (193)
T ss_dssp EEEEE--TTSSHHHHHHHHHHH-GGGS---EEE---TTB-S--EEEE--TTT-S-----S--SSSEEGGGHHHHTTS---
T ss_pred EEEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEE-ccCCcchhhhhhhccccccccccccccccchhhhhhhhhhccc---
Confidence 5678999999999987444 32 23555554 32222 2222222211 00 0112222111
Q ss_pred cCCceEEEeecccccCCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccccCCCCC
Q 020787 115 QGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDG 194 (321)
Q Consensus 115 ~gaPcILFIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpALlRpG 194 (321)
...++|+|||+....+.+...+... ...+ ..+.. .+..+.-||.+|-+|..||+-+++
T Consensus 78 -~~~~liviDEa~~~~~~r~~~~~~~-~~~~--~~l~~----------------hRh~g~diiliTQ~~~~id~~ir~-- 135 (193)
T PF05707_consen 78 -PKGSLIVIDEAQNFFPSRSWKGKKV-PEII--EFLAQ----------------HRHYGWDIILITQSPSQIDKFIRD-- 135 (193)
T ss_dssp -GTT-EEEETTGGGTSB---T-T-----HHH--HGGGG----------------CCCTT-EEEEEES-GGGB-HHHHC--
T ss_pred -CCCcEEEEECChhhcCCCccccccc-hHHH--HHHHH----------------hCcCCcEEEEEeCCHHHHhHHHHH--
Confidence 1579999999999887655321111 1222 22221 123467899999999999998864
Q ss_pred CCcceec
Q 020787 195 RMEKFYW 201 (321)
Q Consensus 195 RfDr~i~ 201 (321)
..+..+.
T Consensus 136 lve~~~~ 142 (193)
T PF05707_consen 136 LVEYHYH 142 (193)
T ss_dssp CEEEEEE
T ss_pred HHheEEE
Confidence 6666554
No 431
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=96.55 E-value=0.0019 Score=58.44 Aligned_cols=28 Identities=32% Similarity=0.431 Sum_probs=24.6
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEE
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVI 83 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~ 83 (321)
++||.|++|||||++++.++. +|++.+.
T Consensus 7 ~igitG~igsGKSt~~~~l~~-~g~~v~d 34 (208)
T PRK14731 7 LVGVTGGIGSGKSTVCRFLAE-MGCELFE 34 (208)
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCeEEe
Confidence 579999999999999999885 7887765
No 432
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=96.54 E-value=0.0036 Score=57.08 Aligned_cols=22 Identities=27% Similarity=0.238 Sum_probs=20.3
Q ss_pred HhccccCCCCcHHHHHHHHHHH
Q 020787 55 SLCIWGGKGQGKSFQTELIFQA 76 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e 76 (321)
.|.|.|+-|||||+.++.++.+
T Consensus 54 ~lvl~G~QG~GKStf~~~L~~~ 75 (198)
T PF05272_consen 54 VLVLVGKQGIGKSTFFRKLGPE 75 (198)
T ss_pred eeeEecCCcccHHHHHHHHhHH
Confidence 7899999999999999998766
No 433
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.54 E-value=0.0042 Score=58.68 Aligned_cols=69 Identities=13% Similarity=0.196 Sum_probs=41.8
Q ss_pred HhccccCCCCcHHHHHHHHHHHcC---CceEEee-cccccccc-----CC-CcHHHHHHHHHHHHhhhhhcCCceEEEee
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMG---IEPVIMS-AGELESER-----AG-EPGKLIRERYRTASQVVQNQGKMSCLMIN 124 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g---~~~i~vs-~~eL~s~~-----~G-Eser~IR~~F~~A~~~~~~~gaPcILFID 124 (321)
++++.||+|+|||++.+++...+. ..++.+. ..|+.-+. +. +.+....+..+.|. +..|.+|+|+
T Consensus 82 lilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~~~~~q~~v~~~~~~~~~~~l~~~l-----R~~PD~i~vg 156 (264)
T cd01129 82 IILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQIPGINQVQVNEKAGLTFARGLRAIL-----RQDPDIIMVG 156 (264)
T ss_pred EEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecCCCceEEEeCCcCCcCHHHHHHHHh-----ccCCCEEEec
Confidence 688999999999999999987764 2344442 23332211 11 11112223333333 4489999999
Q ss_pred cccc
Q 020787 125 DIDA 128 (321)
Q Consensus 125 EIDA 128 (321)
||-.
T Consensus 157 EiR~ 160 (264)
T cd01129 157 EIRD 160 (264)
T ss_pred cCCC
Confidence 9943
No 434
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=96.53 E-value=0.003 Score=65.10 Aligned_cols=24 Identities=29% Similarity=0.426 Sum_probs=22.1
Q ss_pred HhccccCCCCcHHHHHHHHHHHcC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMG 78 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g 78 (321)
+++|.||+|||||++++++++...
T Consensus 368 ~~aivG~sGsGKSTL~~ll~g~~~ 391 (574)
T PRK11160 368 KVALLGRTGCGKSTLLQLLTRAWD 391 (574)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 899999999999999999998763
No 435
>PRK07667 uridine kinase; Provisional
Probab=96.53 E-value=0.0021 Score=57.35 Aligned_cols=36 Identities=25% Similarity=0.171 Sum_probs=29.7
Q ss_pred HhccccCCCCcHHHHHHHHHHHc---CCceEEeeccccc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM---GIEPVIMSAGELE 90 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~---g~~~i~vs~~eL~ 90 (321)
++||.||||+|||++|+.++..+ |.+...++..+..
T Consensus 19 iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~~ 57 (193)
T PRK07667 19 ILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDYI 57 (193)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCccc
Confidence 78999999999999999999876 4566677766654
No 436
>PF13479 AAA_24: AAA domain
Probab=96.52 E-value=0.0045 Score=56.13 Aligned_cols=68 Identities=13% Similarity=0.063 Sum_probs=42.5
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeecccc-cccc------CCCcHHHHHHHHHHHHhhhhhcCCceEEEeeccc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGEL-ESER------AGEPGKLIRERYRTASQVVQNQGKMSCLMINDID 127 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL-~s~~------~GEser~IR~~F~~A~~~~~~~gaPcILFIDEID 127 (321)
.++||||||+|||++|..+ -..-+|-..++.. +..+ -=.+-..+.+.+....+. ...=..|+||-|+
T Consensus 5 ~~lIyG~~G~GKTt~a~~~---~k~l~id~E~g~~~~~~~~~~~~i~i~s~~~~~~~~~~l~~~---~~~y~tiVIDsis 78 (213)
T PF13479_consen 5 KILIYGPPGSGKTTLAASL---PKPLFIDTENGSDSLKFLDDGDVIPITSWEDFLEALDELEED---EADYDTIVIDSIS 78 (213)
T ss_pred EEEEECCCCCCHHHHHHhC---CCeEEEEeCCCccchhhhcCCCeeCcCCHHHHHHHHHHHHhc---cCCCCEEEEECHH
Confidence 3689999999999998876 3334444555521 1111 112556666766654333 2356789999988
Q ss_pred c
Q 020787 128 A 128 (321)
Q Consensus 128 A 128 (321)
.
T Consensus 79 ~ 79 (213)
T PF13479_consen 79 W 79 (213)
T ss_pred H
Confidence 7
No 437
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=96.51 E-value=0.004 Score=60.53 Aligned_cols=130 Identities=19% Similarity=0.242 Sum_probs=66.9
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeec--------------cccccccCCCcHHHHHHHHHHHHhhhhhcCCceE
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSA--------------GELESERAGEPGKLIRERYRTASQVVQNQGKMSC 120 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~--------------~eL~s~~~GEser~IR~~F~~A~~~~~~~gaPcI 120 (321)
-++|.|.||+|||-|.+.+++-.-- -+.+++ .+.-.+|+=|++.++. | .--|
T Consensus 59 hiLlvGdpg~gKS~ll~~~~~~~pr-~v~~~g~~~s~~gLta~~~~d~~~~~~~leaGalvl-----a--------d~Gi 124 (331)
T PF00493_consen 59 HILLVGDPGTGKSQLLKYVAKLAPR-SVYTSGKGSSAAGLTASVSRDPVTGEWVLEAGALVL-----A--------DGGI 124 (331)
T ss_dssp -EEEECSCHHCHHHHHHCCCCT-SS-EEEEECCGSTCCCCCEEECCCGGTSSECEEE-HHHH-----C--------TTSE
T ss_pred ceeeccchhhhHHHHHHHHHhhCCc-eEEECCCCcccCCccceeccccccceeEEeCCchhc-----c--------cCce
Confidence 4688999999999999987643322 222222 2234456666665532 1 3456
Q ss_pred EEeecccccCCCCCCCccchhhHHHHHHHHhhcCCCCcccc--CccccccCCCCCccEEEeeCCCC-------------C
Q 020787 121 LMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSI--GQDWRESDITNRIPIIFTGNDFS-------------T 185 (321)
Q Consensus 121 LFIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql--~g~~~~~~~~~~V~VIaaTNrp~-------------~ 185 (321)
++|||+|..-.. ....|++.|..-+ +++ .|--.. ...+.-|++|+|-.. .
T Consensus 125 ccIDe~dk~~~~------------~~~~l~eaMEqq~-isi~kagi~~~--l~ar~svlaa~NP~~g~~~~~~~~~~ni~ 189 (331)
T PF00493_consen 125 CCIDEFDKMKED------------DRDALHEAMEQQT-ISIAKAGIVTT--LNARCSVLAAANPKFGRYDPNKSLSENIN 189 (331)
T ss_dssp EEECTTTT--CH------------HHHHHHHHHHCSC-EEECTSSSEEE--EE---EEEEEE--TT--S-TTS-CGCCT-
T ss_pred eeecccccccch------------HHHHHHHHHHcCe-eccchhhhccc--ccchhhhHHHHhhhhhhcchhhhhHHhcc
Confidence 778999986421 1224555554321 222 110000 124788999998655 4
Q ss_pred ccccCCCCCCCcceecC---CCHHHHHHHHHHH
Q 020787 186 IYAPLIRDGRMEKFYWQ---PNLEDILNIVHRM 215 (321)
Q Consensus 186 LDpALlRpGRfDr~i~~---Pd~~~R~~Il~~~ 215 (321)
++++|+- |||-.+++ |+.+.=..|-+.+
T Consensus 190 l~~~LLS--RFDLif~l~D~~d~~~D~~la~~i 220 (331)
T PF00493_consen 190 LPPPLLS--RFDLIFLLRDKPDEEEDERLAEHI 220 (331)
T ss_dssp S-CCCHC--C-SEEECC--TTT-HHHHHHHHHH
T ss_pred cchhhHh--hcCEEEEeccccccccccccceEE
Confidence 8889987 99998765 6655444444433
No 438
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=96.51 E-value=0.0047 Score=64.22 Aligned_cols=55 Identities=25% Similarity=0.378 Sum_probs=36.9
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeeccccccccCCCcHHHHHHHHHHHHhhhhhcCCceEE
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCL 121 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~~gaPcIL 121 (321)
+++++|+||+|||++|+.++.+.|+.. ++.-++ |. -......|.+..+ +|.+.||
T Consensus 371 LVil~G~pGSGKST~A~~l~~~~g~~~--vn~D~l-----g~----~~~~~~~a~~~L~-~G~sVVI 425 (526)
T TIGR01663 371 MVIAVGFPGAGKSHFCKKFFQPAGYKH--VNADTL-----GS----TQNCLTACERALD-QGKRCAI 425 (526)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeE--ECcHHH-----HH----HHHHHHHHHHHHh-CCCcEEE
Confidence 778999999999999999999987654 444333 22 1223344554444 6777663
No 439
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=96.50 E-value=0.0025 Score=58.94 Aligned_cols=69 Identities=17% Similarity=0.244 Sum_probs=42.6
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCc---eEEee-ccccccccCC-------CcHHHHHHHHHHHHhhhhhcCCceEEEe
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIE---PVIMS-AGELESERAG-------EPGKLIRERYRTASQVVQNQGKMSCLMI 123 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~---~i~vs-~~eL~s~~~G-------Eser~IR~~F~~A~~~~~~~gaPcILFI 123 (321)
.+++.||+|||||++.++++.++.-. ++.+. ..|+.-+... +.+....++.+.|. +..|.+|+|
T Consensus 129 ~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~l~~~~~~~~~~~~~~~~~~~~l~~~L-----R~~pD~iii 203 (270)
T PF00437_consen 129 NILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELRLPGPNQIQIQTRRDEISYEDLLKSAL-----RQDPDVIII 203 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S--SCSSEEEEEEETTTBSHHHHHHHHT-----TS--SEEEE
T ss_pred EEEEECCCccccchHHHHHhhhccccccceEEeccccceeecccceEEEEeecCcccHHHHHHHHh-----cCCCCcccc
Confidence 66889999999999999999988766 23332 3344322111 23334455555554 348999999
Q ss_pred ecccc
Q 020787 124 NDIDA 128 (321)
Q Consensus 124 DEIDA 128 (321)
.||-.
T Consensus 204 gEiR~ 208 (270)
T PF00437_consen 204 GEIRD 208 (270)
T ss_dssp SCE-S
T ss_pred cccCC
Confidence 99954
No 440
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=96.49 E-value=0.0026 Score=65.24 Aligned_cols=40 Identities=23% Similarity=0.311 Sum_probs=31.8
Q ss_pred hccccCCCCcHHHHHHHHHHHcCCceEEeeccccccccCCCc
Q 020787 56 LCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEP 97 (321)
Q Consensus 56 LgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~~~GEs 97 (321)
+.|.|+||||||++++.+|+.+|+.|+... ++..+..|.+
T Consensus 3 I~l~G~~GsGKSTv~~~La~~lg~~~id~D--~~i~~~~g~~ 42 (488)
T PRK13951 3 IFLVGMMGSGKSTIGKRVSEVLDLQFIDMD--EEIERREGRS 42 (488)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEECc--HHHHHHcCCC
Confidence 578999999999999999999999998554 3444445544
No 441
>PRK14737 gmk guanylate kinase; Provisional
Probab=96.48 E-value=0.0035 Score=56.18 Aligned_cols=23 Identities=22% Similarity=0.216 Sum_probs=20.7
Q ss_pred HhccccCCCCcHHHHHHHHHHHc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM 77 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~ 77 (321)
++.|.||||+|||++++.+.++.
T Consensus 6 ~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 6 LFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 46789999999999999998886
No 442
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=96.47 E-value=0.0042 Score=63.50 Aligned_cols=67 Identities=18% Similarity=0.401 Sum_probs=48.9
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeeccccccccCCCcHHHHHHHHHH---------------------------
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRT--------------------------- 107 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~~~GEser~IR~~F~~--------------------------- 107 (321)
+++|.||+|||||++.+.+++......+++ + -+||..+-+++..++
T Consensus 164 rigI~G~sG~GKSTLL~~I~~~~~~dv~Vi-~------lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a 236 (444)
T PRK08972 164 RMGLFAGSGVGKSVLLGMMTRGTTADVIVV-G------LVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKG 236 (444)
T ss_pred EEEEECCCCCChhHHHHHhccCCCCCEEEE-E------EEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHH
Confidence 899999999999999999998877765555 2 146666666655443
Q ss_pred ------HHhhhhhcCCceEEEeecccc
Q 020787 108 ------ASQVVQNQGKMSCLMINDIDA 128 (321)
Q Consensus 108 ------A~~~~~~~gaPcILFIDEIDA 128 (321)
.+|..+.+|+-.+|++|.+=.
T Consensus 237 ~~~A~tiAEyfrd~G~~VLl~~DslTR 263 (444)
T PRK08972 237 CETATTIAEYFRDQGLNVLLLMDSLTR 263 (444)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEcChHH
Confidence 234445578888899888754
No 443
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.47 E-value=0.03 Score=59.44 Aligned_cols=30 Identities=13% Similarity=-0.027 Sum_probs=24.3
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEee
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMS 85 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs 85 (321)
..+|+||+|.|||+++...+...+ .++-++
T Consensus 34 ~~~v~apaG~GKTtl~~~~~~~~~-~~~w~~ 63 (903)
T PRK04841 34 LVLVTSPAGYGKTTLISQWAAGKN-NLGWYS 63 (903)
T ss_pred eEEEECCCCCCHHHHHHHHHHhCC-CeEEEe
Confidence 678999999999999999888776 444443
No 444
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=96.47 E-value=0.011 Score=53.31 Aligned_cols=33 Identities=18% Similarity=0.253 Sum_probs=23.6
Q ss_pred hHhccccCCCCcHHHHHHHHHHH---cCCceEEeec
Q 020787 54 ASLCIWGGKGQGKSFQTELIFQA---MGIEPVIMSA 86 (321)
Q Consensus 54 ~iLgL~GPPGcGKTllaravA~e---~g~~~i~vs~ 86 (321)
.+++|.||||+|||.+|-.+|.+ .|-+.+.++.
T Consensus 17 ~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~ 52 (224)
T TIGR03880 17 HVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISL 52 (224)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 47789999999999998777643 2544444444
No 445
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.46 E-value=0.0016 Score=56.34 Aligned_cols=25 Identities=16% Similarity=0.190 Sum_probs=22.4
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGI 79 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~ 79 (321)
++.|.||||||||+++++++..++.
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~~~~ 27 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARARLAG 27 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCc
Confidence 3679999999999999999998865
No 446
>PRK00023 cmk cytidylate kinase; Provisional
Probab=96.46 E-value=0.0016 Score=60.03 Aligned_cols=33 Identities=21% Similarity=0.458 Sum_probs=27.8
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeecccc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGEL 89 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL 89 (321)
++.|-||||||||++++++|+++|++++ +.+.+
T Consensus 6 ~i~i~g~~gsGksti~~~la~~~~~~~~--~~~~~ 38 (225)
T PRK00023 6 VIAIDGPAGSGKGTVAKILAKKLGFHYL--DTGAM 38 (225)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCcc--cCchh
Confidence 5789999999999999999999997764 44443
No 447
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.44 E-value=0.0078 Score=53.45 Aligned_cols=70 Identities=19% Similarity=0.223 Sum_probs=46.3
Q ss_pred hccccCCCCcHHHHHHHHHHHc---CCceEEeeccccccccC---CCc----HHHHHHHHHHHHhhhhhcCCceEEEeec
Q 020787 56 LCIWGGKGQGKSFQTELIFQAM---GIEPVIMSAGELESERA---GEP----GKLIRERYRTASQVVQNQGKMSCLMIND 125 (321)
Q Consensus 56 LgL~GPPGcGKTllaravA~e~---g~~~i~vs~~eL~s~~~---GEs----er~IR~~F~~A~~~~~~~gaPcILFIDE 125 (321)
+.|.|.||+|||++|+++.+++ |.+.+.+.+.++-..+. |-+ +..+|.+-..|+.+++ +|.-+|
T Consensus 5 IwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~~l~~dl~fs~~dR~e~~rr~~~~A~ll~~-~G~ivI----- 78 (156)
T PF01583_consen 5 IWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRHGLNADLGFSKEDREENIRRIAEVAKLLAD-QGIIVI----- 78 (156)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCTTTTTT--SSHHHHHHHHHHHHHHHHHHHH-TTSEEE-----
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhhccCCCCCCCHHHHHHHHHHHHHHHHHHHh-CCCeEE-----
Confidence 5688999999999999999776 78899999987776543 323 4567777777766654 444333
Q ss_pred ccccCC
Q 020787 126 IDAGLG 131 (321)
Q Consensus 126 IDAg~~ 131 (321)
+.++++
T Consensus 79 va~isp 84 (156)
T PF01583_consen 79 VAFISP 84 (156)
T ss_dssp EE----
T ss_pred EeeccC
Confidence 445554
No 448
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.44 E-value=0.0017 Score=56.29 Aligned_cols=24 Identities=21% Similarity=0.396 Sum_probs=22.1
Q ss_pred HhccccCCCCcHHHHHHHHHHHcC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMG 78 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g 78 (321)
.+.|.||||||||+++++++.++.
T Consensus 9 ~I~i~G~~GsGKst~a~~l~~~l~ 32 (176)
T PRK05541 9 VIWITGLAGSGKTTIAKALYERLK 32 (176)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 567899999999999999999986
No 449
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=96.44 E-value=0.0036 Score=61.87 Aligned_cols=32 Identities=22% Similarity=0.341 Sum_probs=27.0
Q ss_pred cccchhhhh-------HhccccCCCCcHHHHHHHHHHHc
Q 020787 46 YYIAPVFMA-------SLCIWGGKGQGKSFQTELIFQAM 77 (321)
Q Consensus 46 ~~~~p~f~~-------iLgL~GPPGcGKTllaravA~e~ 77 (321)
+..|+.+.+ .+++.||+|+|||++.++++..+
T Consensus 120 l~~~~~~~~~~~~~~glilI~GpTGSGKTTtL~aLl~~i 158 (358)
T TIGR02524 120 LDLPAAIIDAIAPQEGIVFITGATGSGKSTLLAAIIREL 158 (358)
T ss_pred cCCCHHHHHHHhccCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 345666665 78999999999999999999886
No 450
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.42 E-value=0.012 Score=55.93 Aligned_cols=23 Identities=17% Similarity=0.224 Sum_probs=20.3
Q ss_pred HhccccCCCCcHHHHHHHHHHHc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM 77 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~ 77 (321)
+..|+||||||||.+|-.+|...
T Consensus 97 i~ei~G~~g~GKT~l~~~~~~~~ 119 (310)
T TIGR02236 97 ITEVFGEFGSGKTQICHQLAVNV 119 (310)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 77899999999999998888663
No 451
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=96.42 E-value=0.0023 Score=62.06 Aligned_cols=78 Identities=17% Similarity=0.231 Sum_probs=45.5
Q ss_pred hccccCCCCcHHHHHHHHHHHc-----CC--ceEEeeccccc---cccCCCc-HHHHHHHHHHHHhhhhh-------cCC
Q 020787 56 LCIWGGKGQGKSFQTELIFQAM-----GI--EPVIMSAGELE---SERAGEP-GKLIRERYRTASQVVQN-------QGK 117 (321)
Q Consensus 56 LgL~GPPGcGKTllaravA~e~-----g~--~~i~vs~~eL~---s~~~GEs-er~IR~~F~~A~~~~~~-------~ga 117 (321)
+++.|.||||||++|-.+|+++ +- .+++.+.+... ....... ....+..|......+.. ...
T Consensus 4 ~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 83 (352)
T PF09848_consen 4 ILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNHPLRNKLREQLAKKYNPKLKKSDFRKPTSFINNYSESDKEKNK 83 (352)
T ss_pred EEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEecchHHHHHHHHHhhhcccchhhhhhhhhHHHHhhcccccccCCc
Confidence 5789999999999999999998 22 33333333221 1111111 12233344444433321 135
Q ss_pred ceEEEeecccccCCCC
Q 020787 118 MSCLMINDIDAGLGRF 133 (321)
Q Consensus 118 PcILFIDEIDAg~~r~ 133 (321)
-.||+|||-.-+..+.
T Consensus 84 ~DviivDEAqrl~~~~ 99 (352)
T PF09848_consen 84 YDVIIVDEAQRLRTKG 99 (352)
T ss_pred CCEEEEehhHhhhhcc
Confidence 6899999998877643
No 452
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=96.42 E-value=0.0069 Score=63.61 Aligned_cols=24 Identities=29% Similarity=0.396 Sum_probs=21.8
Q ss_pred HhccccCCCCcHHHHHHHHHHHcC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMG 78 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g 78 (321)
..+|.||+|||||+|++++++...
T Consensus 493 ~iaIvG~sGsGKSTLlklL~gl~~ 516 (694)
T TIGR03375 493 KVAIIGRIGSGKSTLLKLLLGLYQ 516 (694)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 889999999999999999997653
No 453
>PRK12338 hypothetical protein; Provisional
Probab=96.41 E-value=0.0019 Score=63.37 Aligned_cols=27 Identities=22% Similarity=0.271 Sum_probs=25.0
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCce
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEP 81 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~ 81 (321)
+++|.|+||||||++|+++|..+|+..
T Consensus 6 ii~i~G~sGsGKST~a~~la~~l~~~~ 32 (319)
T PRK12338 6 VILIGSASGIGKSTIASELARTLNIKH 32 (319)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCeE
Confidence 678999999999999999999999865
No 454
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=96.40 E-value=0.0065 Score=61.49 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=22.1
Q ss_pred HhccccCCCCcHHHHHHHHHHHcC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMG 78 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g 78 (321)
.++|.||+|||||+|++++++...
T Consensus 350 ~~~ivG~sGsGKSTL~~ll~g~~~ 373 (529)
T TIGR02857 350 RVALVGPSGAGKSTLLNLLLGFVD 373 (529)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 899999999999999999998664
No 455
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=96.39 E-value=0.014 Score=57.87 Aligned_cols=118 Identities=16% Similarity=0.192 Sum_probs=69.3
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCc-e-----EEeeccccccccCCCcHHHHHHHHHHHHhh--hhhcCCceEEEeecc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIE-P-----VIMSAGELESERAGEPGKLIRERYRTASQV--VQNQGKMSCLMINDI 126 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~-~-----i~vs~~eL~s~~~GEser~IR~~F~~A~~~--~~~~gaPcILFIDEI 126 (321)
-|++|||||+|||.-..|+|.++-.+ . .-+.+++=- -.+ .-|.=-..|.-++.. .+....+-.+++||-
T Consensus 64 h~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelnaSd~r--gid-~vr~qi~~fast~~~~~fst~~~fKlvILDEA 140 (360)
T KOG0990|consen 64 HLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNASDDR--GID-PVRQQIHLFASTQQPTTYSTHAAFKLVILDEA 140 (360)
T ss_pred cccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhccCcc--CCc-chHHHHHHHHhhccceeccccCceeEEEecch
Confidence 78999999999999999999998763 1 112222111 011 112222456666531 111237899999999
Q ss_pred cccCCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccccCCCCCCCcceecCC
Q 020787 127 DAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQP 203 (321)
Q Consensus 127 DAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpALlRpGRfDr~i~~P 203 (321)
||.... .|. . -|+|..++ +.++-++.-.|-|..+-||+.= |+-++=+.|
T Consensus 141 DaMT~~---AQn-A-LRRviek~---------------------t~n~rF~ii~n~~~ki~pa~qs--Rctrfrf~p 189 (360)
T KOG0990|consen 141 DAMTRD---AQN-A-LRRVIEKY---------------------TANTRFATISNPPQKIHPAQQS--RCTRFRFAP 189 (360)
T ss_pred hHhhHH---HHH-H-HHHHHHHh---------------------ccceEEEEeccChhhcCchhhc--ccccCCCCC
Confidence 996521 111 1 13343322 2345455667999999999765 555554443
No 456
>KOG3079 consensus Uridylate kinase/adenylate kinase [Nucleotide transport and metabolism]
Probab=96.36 E-value=0.0033 Score=57.92 Aligned_cols=55 Identities=27% Similarity=0.382 Sum_probs=43.4
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeeccccccccCCC-------------------cHHHHHHHHHHHHhh
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGE-------------------PGKLIRERYRTASQV 111 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~~~GE-------------------ser~IR~~F~~A~~~ 111 (321)
|..+-|+|||||=++|+-++...| |.++|+++|+..-... |.+.+.++.++|...
T Consensus 10 IifVlGGPGsgKgTqC~kiv~ky~--ftHlSaGdLLR~E~~~~gse~g~~I~~~i~~G~iVP~ei~~~LL~~am~~ 83 (195)
T KOG3079|consen 10 IIFVLGGPGSGKGTQCEKIVEKYG--FTHLSAGDLLRAEIASAGSERGALIKEIIKNGDLVPVEITLSLLEEAMRS 83 (195)
T ss_pred EEEEEcCCCCCcchHHHHHHHHcC--ceeecHHHHHHHHHccccChHHHHHHHHHHcCCcCcHHHHHHHHHHHHHh
Confidence 667889999999999999999999 9999999998653322 455566666666544
No 457
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=96.35 E-value=0.0091 Score=57.55 Aligned_cols=66 Identities=12% Similarity=0.151 Sum_probs=45.0
Q ss_pred HhccccCCCCcHHHHH-HHHHHHcCCceEEeeccccccccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeecccc
Q 020787 55 SLCIWGGKGQGKSFQT-ELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDA 128 (321)
Q Consensus 55 iLgL~GPPGcGKTlla-ravA~e~g~~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDEIDA 128 (321)
.+||.||+|+|||.|+ ..+++.....+++|-+. +||..+-+++.+++-.+.- .-+=+++|..--|.
T Consensus 71 r~~Ifg~~g~GKt~L~l~~i~~~~~~~v~~V~~~------iGer~~ev~e~~~~~~~~~--~~~~tvvv~~t~d~ 137 (274)
T cd01132 71 RELIIGDRQTGKTAIAIDTIINQKGKKVYCIYVA------IGQKASTVAQVVKTLEEHG--AMEYTIVVAATASD 137 (274)
T ss_pred EEEeeCCCCCCccHHHHHHHHHhcCCCeEEEEEe------cccchHHHHHHHHHHHhcC--ccceeEEEEeCCCC
Confidence 7899999999999994 88988887777755554 5777777777666554221 01234566555554
No 458
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=96.34 E-value=0.012 Score=54.38 Aligned_cols=49 Identities=18% Similarity=0.090 Sum_probs=33.7
Q ss_pred HHhhhhhhccCccccchhhhhHhccccCCCCcHHHHHHHHHHHc----CCceEEeec
Q 020787 34 KVTRSFEYLQGDYYIAPVFMASLCIWGGKGQGKSFQTELIFQAM----GIEPVIMSA 86 (321)
Q Consensus 34 ~~~~~~~~~~~~~~~~p~f~~iLgL~GPPGcGKTllaravA~e~----g~~~i~vs~ 86 (321)
+.++.++.+.||++-. +...|-|+||+|||+++--+|..+ +.+++.+|.
T Consensus 4 TG~~~LD~~lgG~~~g----~L~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~Sl 56 (259)
T PF03796_consen 4 TGFPALDRLLGGLRPG----ELTVIAARPGVGKTAFALQIALNAALNGGYPVLYFSL 56 (259)
T ss_dssp SSTHHHHHHHSSB-TT-----EEEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEES
T ss_pred CChHHHHHHhcCCCcC----cEEEEEecccCCchHHHHHHHHHHHHhcCCeEEEEcC
Confidence 4567777777775321 246788999999999997776533 566666665
No 459
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.34 E-value=0.014 Score=64.28 Aligned_cols=134 Identities=20% Similarity=0.212 Sum_probs=92.7
Q ss_pred ccccCCCCcHHHHHHHHHHHc----------CCceEEeeccccccc--cCCCcHHHHHHHHHHHHhhhhhcCCceEEEee
Q 020787 57 CIWGGKGQGKSFQTELIFQAM----------GIEPVIMSAGELESE--RAGEPGKLIRERYRTASQVVQNQGKMSCLMIN 124 (321)
Q Consensus 57 gL~GPPGcGKTllaravA~e~----------g~~~i~vs~~eL~s~--~~GEser~IR~~F~~A~~~~~~~gaPcILFID 124 (321)
+|-|.||.|||-+++=+|... +..++.++-+.+.++ +-||-|.++.++-+++.. .+..-|||||
T Consensus 212 vLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g~l~aGa~~rge~E~rlk~l~k~v~~----~~~gvILfig 287 (898)
T KOG1051|consen 212 VLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGSLVAGAKRRGEFEERLKELLKEVES----GGGGVILFLG 287 (898)
T ss_pred eEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhhhcccCcccchHHHHHHHHHHHHHhc----CCCcEEEEec
Confidence 488999999999999888763 457777777766654 789999999999998864 3577899999
Q ss_pred cccccCCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCC------ccccCCCCCCCcc
Q 020787 125 DIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFST------IYAPLIRDGRMEK 198 (321)
Q Consensus 125 EIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~------LDpALlRpGRfDr 198 (321)
||+...+-..+ +. .+-..-+|..+=. ...+-.|+||. .++ -||||-| ||+.
T Consensus 288 elh~lvg~g~~--~~---~~d~~nlLkp~L~---------------rg~l~~IGatT-~e~Y~k~iekdPalEr--rw~l 344 (898)
T KOG1051|consen 288 ELHWLVGSGSN--YG---AIDAANLLKPLLA---------------RGGLWCIGATT-LETYRKCIEKDPALER--RWQL 344 (898)
T ss_pred ceeeeecCCCc--ch---HHHHHHhhHHHHh---------------cCCeEEEeccc-HHHHHHHHhhCcchhh--Ccce
Confidence 99997653222 11 1111122221110 22477888766 444 3899999 9998
Q ss_pred eec-CCCHHHHHHHHHHHhh
Q 020787 199 FYW-QPNLEDILNIVHRMYE 217 (321)
Q Consensus 199 ~i~-~Pd~~~R~~Il~~~~~ 217 (321)
.+. +|+.++=..||+..-.
T Consensus 345 ~~v~~pS~~~~~~iL~~l~~ 364 (898)
T KOG1051|consen 345 VLVPIPSVENLSLILPGLSE 364 (898)
T ss_pred eEeccCcccchhhhhhhhhh
Confidence 665 6988876677765443
No 460
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=96.33 E-value=0.006 Score=59.73 Aligned_cols=68 Identities=13% Similarity=0.267 Sum_probs=45.8
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCC--ceEEe-ecccccc------------c-cCCCcHHHHHHHHHHHHhhhhhcCCc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGI--EPVIM-SAGELES------------E-RAGEPGKLIRERYRTASQVVQNQGKM 118 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~--~~i~v-s~~eL~s------------~-~~GEser~IR~~F~~A~~~~~~~gaP 118 (321)
-+++.||+|+|||++.+|++....- .++.+ ...|+.- + -.|..+-...++.+.|..+ .|
T Consensus 162 nili~G~tgSGKTTll~aL~~~ip~~~ri~tiEd~~El~l~~~~n~~~~~~~~~~~~~~~~~~~~ll~~~LR~-----~P 236 (332)
T PRK13900 162 NIIISGGTSTGKTTFTNAALREIPAIERLITVEDAREIVLSNHPNRVHLLASKGGQGRAKVTTQDLIEACLRL-----RP 236 (332)
T ss_pred cEEEECCCCCCHHHHHHHHHhhCCCCCeEEEecCCCccccccCCCEEEEEecCCCCCcCcCcHHHHHHHHhcc-----CC
Confidence 7789999999999999999988764 23332 2233321 0 0133333456667766644 89
Q ss_pred eEEEeeccc
Q 020787 119 SCLMINDID 127 (321)
Q Consensus 119 cILFIDEID 127 (321)
..|++.||-
T Consensus 237 D~IivGEiR 245 (332)
T PRK13900 237 DRIIVGELR 245 (332)
T ss_pred CeEEEEecC
Confidence 999999985
No 461
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=96.32 E-value=0.0056 Score=62.95 Aligned_cols=108 Identities=23% Similarity=0.293 Sum_probs=67.2
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceE------------------EeeccccccccC------------CC--------
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPV------------------IMSAGELESERA------------GE-------- 96 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i------------------~vs~~eL~s~~~------------GE-------- 96 (321)
+.-+.|++|.|||.+.+.++.++-...- .+-++|++..+- |+
T Consensus 411 vvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~a~iPge~Ep~f~~~tilehl~s~tGD~~~AveIL 490 (593)
T COG2401 411 VVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSALIPGEYEPEFGEVTILEHLRSKTGDLNAAVEIL 490 (593)
T ss_pred eEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchhhccCcccccccCchhHHHHHhhccCchhHHHHHH
Confidence 6788999999999999999987643222 133455554433 22
Q ss_pred ------cHHHHH-----------HHHHHHHhhhhhcCCceEEEeecccccCCCCCCCccchhhHHHHHHHHhhcCCCCcc
Q 020787 97 ------PGKLIR-----------ERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRV 159 (321)
Q Consensus 97 ------ser~IR-----------~~F~~A~~~~~~~gaPcILFIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~v 159 (321)
++-+-| ++++.|+-. +..|.++.+||.+|..-. ..-++|..-+-+++.
T Consensus 491 nraGlsDAvlyRr~f~ELStGQKeR~KLAkll---aerpn~~~iDEF~AhLD~-------~TA~rVArkiselaR----- 555 (593)
T COG2401 491 NRAGLSDAVLYRRKFSELSTGQKERAKLAKLL---AERPNVLLIDEFAAHLDE-------LTAVRVARKISELAR----- 555 (593)
T ss_pred HhhccchhhhhhccHhhcCcchHHHHHHHHHH---hcCCCcEEhhhhhhhcCH-------HHHHHHHHHHHHHHH-----
Confidence 111111 122334433 347999999999997632 222455555544443
Q ss_pred ccCccccccCCCCCccEEEeeCCCCCccc
Q 020787 160 SIGQDWRESDITNRIPIIFTGNDFSTIYA 188 (321)
Q Consensus 160 ql~g~~~~~~~~~~V~VIaaTNrp~~LDp 188 (321)
.-.+++|+.|+||+-+++
T Consensus 556 -----------e~giTlivvThrpEv~~A 573 (593)
T COG2401 556 -----------EAGITLIVVTHRPEVGNA 573 (593)
T ss_pred -----------HhCCeEEEEecCHHHHhc
Confidence 236889999999998873
No 462
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.31 E-value=0.0053 Score=64.27 Aligned_cols=122 Identities=16% Similarity=0.305 Sum_probs=77.5
Q ss_pred cccchh-hhh----------HhccccCCCCcHHHHHHHHHHHcCC--------------------ceEEeec--------
Q 020787 46 YYIAPV-FMA----------SLCIWGGKGQGKSFQTELIFQAMGI--------------------EPVIMSA-------- 86 (321)
Q Consensus 46 ~~~~p~-f~~----------iLgL~GPPGcGKTllaravA~e~g~--------------------~~i~vs~-------- 86 (321)
+|-|.+ .++ -++|-|++|||||++.|++..=.+- ..|.+.+
T Consensus 360 ~y~~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFnd 439 (591)
T KOG0057|consen 360 SYGPKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFDYSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFND 439 (591)
T ss_pred EeCCCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhccCCcEEECCeeHhhhChHHhhhheeEeCCcccccch
Confidence 555666 555 7999999999999999998864431 1111111
Q ss_pred ---------------------------ccccccc-------CCCcHHHH----HHHHHHHHhhhhhcCCceEEEeecccc
Q 020787 87 ---------------------------GELESER-------AGEPGKLI----RERYRTASQVVQNQGKMSCLMINDIDA 128 (321)
Q Consensus 87 ---------------------------~eL~s~~-------~GEser~I----R~~F~~A~~~~~~~gaPcILFIDEIDA 128 (321)
.|.++++ +||-.+.| +++-.-||...| .|.|+++||.=+
T Consensus 440 TIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lK---da~Il~~DEaTS 516 (591)
T KOG0057|consen 440 TILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLK---DAPILLLDEATS 516 (591)
T ss_pred hHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhc---CCCeEEecCccc
Confidence 2333333 67655444 456666777765 788999999755
Q ss_pred cCCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccccCCCCCCCcceecC
Q 020787 129 GLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQ 202 (321)
Q Consensus 129 g~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpALlRpGRfDr~i~~ 202 (321)
-.- ..+ .+.+...+|..++ +..||+-..|.+++. +||+.+++
T Consensus 517 ~LD-----~~T--E~~i~~~i~~~~~------------------~rTvI~IvH~l~ll~-------~~DkI~~l 558 (591)
T KOG0057|consen 517 ALD-----SET--EREILDMIMDVMS------------------GRTVIMIVHRLDLLK-------DFDKIIVL 558 (591)
T ss_pred ccc-----hhh--HHHHHHHHHHhcC------------------CCeEEEEEecchhHh-------cCCEEEEE
Confidence 431 111 2455556654433 345777778899998 89998764
No 463
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=96.31 E-value=0.0043 Score=64.62 Aligned_cols=131 Identities=18% Similarity=0.305 Sum_probs=79.5
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCC--ceEEeecccc-------------------------------------------
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGI--EPVIMSAGEL------------------------------------------- 89 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~--~~i~vs~~eL------------------------------------------- 89 (321)
.|+|-||+|+|||+|+|++..-+-. --+.+++.+|
T Consensus 364 ~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~kIi 443 (580)
T COG4618 364 ALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVI 443 (580)
T ss_pred eEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccceecCCcHHHHHHhccccCCHHHHH
Confidence 8999999999999999998865532 2233333222
Q ss_pred ------------------ccccCCCcHHHH----HHHHHHHHhhhhhcCCceEEEeecccccCCCCCCCccchhhHHHHH
Q 020787 90 ------------------ESERAGEPGKLI----RERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVG 147 (321)
Q Consensus 90 ------------------~s~~~GEser~I----R~~F~~A~~~~~~~gaPcILFIDEIDAg~~r~~~t~~~v~~q~V~~ 147 (321)
++..+||....+ |++-..||.. -|.|-++.+||=.+-.-. .+ .+-+..
T Consensus 444 eAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAl---YG~P~lvVLDEPNsNLD~---~G----E~AL~~ 513 (580)
T COG4618 444 EAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARAL---YGDPFLVVLDEPNSNLDS---EG----EAALAA 513 (580)
T ss_pred HHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHH---cCCCcEEEecCCCCCcch---hH----HHHHHH
Confidence 233344433332 4555556655 467888888886664311 11 233333
Q ss_pred HHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCcccc----CCCCCCCcceecCCCHHHHHHHHHHHhhc
Q 020787 148 TLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAP----LIRDGRMEKFYWQPNLEDILNIVHRMYEK 218 (321)
Q Consensus 148 tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpA----LlRpGRfDr~i~~Pd~~~R~~Il~~~~~~ 218 (321)
-++.. . .+++.||+.|.||+.|-.. ++..||+.. .-.|.++|+.+++.
T Consensus 514 Ai~~~----------------k-~rG~~vvviaHRPs~L~~~Dkilvl~~G~~~~------FG~r~eVLa~~~~~ 565 (580)
T COG4618 514 AILAA----------------K-ARGGTVVVIAHRPSALASVDKILVLQDGRIAA------FGPREEVLAKVLRP 565 (580)
T ss_pred HHHHH----------------H-HcCCEEEEEecCHHHHhhcceeeeecCChHHh------cCCHHHHHHHhcCC
Confidence 33221 1 3467888889999988654 567777654 24567778777653
No 464
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.30 E-value=0.019 Score=55.13 Aligned_cols=23 Identities=17% Similarity=0.200 Sum_probs=20.0
Q ss_pred HhccccCCCCcHHHHHHHHHHHc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM 77 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~ 77 (321)
+..|+||||||||.+|-.+|..+
T Consensus 104 vtei~G~~GsGKT~l~~~~~~~~ 126 (317)
T PRK04301 104 ITEFYGEFGSGKTQICHQLAVNV 126 (317)
T ss_pred EEEEECCCCCCHhHHHHHHHHHh
Confidence 67799999999999998888663
No 465
>PTZ00035 Rad51 protein; Provisional
Probab=96.30 E-value=0.016 Score=56.82 Aligned_cols=23 Identities=13% Similarity=0.114 Sum_probs=19.8
Q ss_pred HhccccCCCCcHHHHHHHHHHHc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM 77 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~ 77 (321)
+..|+||||||||.+|..+|...
T Consensus 120 iteI~G~~GsGKT~l~~~l~~~~ 142 (337)
T PTZ00035 120 ITELFGEFRTGKTQLCHTLCVTC 142 (337)
T ss_pred EEEEECCCCCchhHHHHHHHHHh
Confidence 67799999999999999887543
No 466
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=96.30 E-value=0.0048 Score=66.23 Aligned_cols=65 Identities=18% Similarity=0.350 Sum_probs=42.2
Q ss_pred HHHHHHHHhhhhhcCCceEEEeecccccCCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeC
Q 020787 102 RERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGN 181 (321)
Q Consensus 102 R~~F~~A~~~~~~~gaPcILFIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTN 181 (321)
|++-.-||... .+|.||++||-=+..- ....+.|.+.|..++. +..+|+.|.
T Consensus 615 rQrlalARaLl---~~P~ILlLDEaTSaLD-------~~sE~~I~~~L~~~~~------------------~~T~I~IaH 666 (709)
T COG2274 615 RQRLALARALL---SKPKILLLDEATSALD-------PETEAIILQNLLQILQ------------------GRTVIIIAH 666 (709)
T ss_pred HHHHHHHHHhc---cCCCEEEEeCcccccC-------HhHHHHHHHHHHHHhc------------------CCeEEEEEc
Confidence 56666677664 4899999999766441 1223567666665433 355777788
Q ss_pred CCCCccccCCCCCCCcceec
Q 020787 182 DFSTIYAPLIRDGRMEKFYW 201 (321)
Q Consensus 182 rp~~LDpALlRpGRfDr~i~ 201 (321)
|++++- +.|+.+.
T Consensus 667 Rl~ti~-------~adrIiV 679 (709)
T COG2274 667 RLSTIR-------SADRIIV 679 (709)
T ss_pred cchHhh-------hccEEEE
Confidence 888876 6666553
No 467
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=96.28 E-value=0.0053 Score=60.59 Aligned_cols=68 Identities=13% Similarity=0.242 Sum_probs=45.2
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCC--ceEEee-ccccccc------------cCCCcHHHHHHHHHHHHhhhhhcCCce
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGI--EPVIMS-AGELESE------------RAGEPGKLIRERYRTASQVVQNQGKMS 119 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~--~~i~vs-~~eL~s~------------~~GEser~IR~~F~~A~~~~~~~gaPc 119 (321)
.+++.||+|+|||++++|++..... ..+.+- ..|+.-+ -.|..+-...++++.|..+ .|.
T Consensus 164 nilI~G~tGSGKTTll~aLl~~i~~~~rivtiEd~~El~l~~~~~v~l~~~~~~~~~~~~t~~~ll~~~LR~-----~pD 238 (344)
T PRK13851 164 TMLLCGPTGSGKTTMSKTLISAIPPQERLITIEDTLELVIPHENHVRLLYSKNGAGLGAVTAEHLLQASLRM-----RPD 238 (344)
T ss_pred eEEEECCCCccHHHHHHHHHcccCCCCCEEEECCCccccCCCCCEEEEEeeccccCcCccCHHHHHHHHhcC-----CCC
Confidence 6789999999999999999988754 222221 2233211 0123334556677766644 899
Q ss_pred EEEeeccc
Q 020787 120 CLMINDID 127 (321)
Q Consensus 120 ILFIDEID 127 (321)
.|++.||=
T Consensus 239 ~IivGEiR 246 (344)
T PRK13851 239 RILLGEMR 246 (344)
T ss_pred eEEEEeeC
Confidence 99999985
No 468
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=96.28 E-value=0.0097 Score=63.07 Aligned_cols=24 Identities=25% Similarity=0.346 Sum_probs=22.3
Q ss_pred HhccccCCCCcHHHHHHHHHHHcC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMG 78 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g 78 (321)
..+|.||+|||||++++++++...
T Consensus 509 ~vaIvG~SGsGKSTLl~lL~gl~~ 532 (711)
T TIGR00958 509 VVALVGPSGSGKSTVAALLQNLYQ 532 (711)
T ss_pred EEEEECCCCCCHHHHHHHHHhccC
Confidence 889999999999999999998764
No 469
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=96.27 E-value=0.013 Score=59.89 Aligned_cols=24 Identities=25% Similarity=0.412 Sum_probs=22.2
Q ss_pred HhccccCCCCcHHHHHHHHHHHcC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMG 78 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g 78 (321)
.++|.||.|||||+|++++++...
T Consensus 371 ~~aIvG~sGsGKSTLl~ll~gl~~ 394 (582)
T PRK11176 371 TVALVGRSGSGKSTIANLLTRFYD 394 (582)
T ss_pred EEEEECCCCCCHHHHHHHHHhccC
Confidence 789999999999999999998764
No 470
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=96.26 E-value=0.0088 Score=54.07 Aligned_cols=46 Identities=13% Similarity=0.083 Sum_probs=32.6
Q ss_pred ccCCCCcHHHHHHHHHHHcCCceEEeeccccccccCCCcHHHHHHHHHHH
Q 020787 59 WGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTA 108 (321)
Q Consensus 59 ~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~~~GEser~IR~~F~~A 108 (321)
-+++|||||+++.|+++-.|= +-+|..-++-.| .+.+.+...-+..
T Consensus 5 IAtiGCGKTTva~aL~~LFg~-wgHvQnDnI~~k---~~~~f~~~~l~~L 50 (168)
T PF08303_consen 5 IATIGCGKTTVALALSNLFGE-WGHVQNDNITGK---RKPKFIKAVLELL 50 (168)
T ss_pred ecCCCcCHHHHHHHHHHHcCC-CCccccCCCCCC---CHHHHHHHHHHHH
Confidence 368999999999999999983 444666666554 4556665555544
No 471
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=96.26 E-value=0.0065 Score=59.76 Aligned_cols=23 Identities=30% Similarity=0.241 Sum_probs=20.2
Q ss_pred HhccccCCCCcHHHHHHHHHHHc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM 77 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~ 77 (321)
.+||.||||+|||+++.+++..+
T Consensus 58 ~igi~G~~GaGKSTl~~~l~~~l 80 (332)
T PRK09435 58 RIGITGVPGVGKSTFIEALGMHL 80 (332)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 79999999999999999876554
No 472
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=96.26 E-value=0.0053 Score=59.03 Aligned_cols=68 Identities=18% Similarity=0.139 Sum_probs=43.1
Q ss_pred hccccCCCCcHHHHHHHHHHHcCCc--------eEEe-eccccccccCCCcHHHHHHHH------------HHHHhhhhh
Q 020787 56 LCIWGGKGQGKSFQTELIFQAMGIE--------PVIM-SAGELESERAGEPGKLIRERY------------RTASQVVQN 114 (321)
Q Consensus 56 LgL~GPPGcGKTllaravA~e~g~~--------~i~v-s~~eL~s~~~GEser~IR~~F------------~~A~~~~~~ 114 (321)
.+|-||||||||++.|-+|.-+..- ...+ ..+|+-....|-|.--+-.+- =+|.+
T Consensus 140 tLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmmmaIr---- 215 (308)
T COG3854 140 TLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMMMAIR---- 215 (308)
T ss_pred eEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHHHHHHHHHH----
Confidence 6788999999999988888765432 2222 346666555565543332222 22332
Q ss_pred cCCceEEEeeccc
Q 020787 115 QGKMSCLMINDID 127 (321)
Q Consensus 115 ~gaPcILFIDEID 127 (321)
...|-||++|||-
T Consensus 216 sm~PEViIvDEIG 228 (308)
T COG3854 216 SMSPEVIIVDEIG 228 (308)
T ss_pred hcCCcEEEEeccc
Confidence 3489999999983
No 473
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=96.25 E-value=0.0063 Score=59.64 Aligned_cols=67 Identities=13% Similarity=0.272 Sum_probs=43.8
Q ss_pred HhccccCCCCcHHHHHHHHHHHc-----CCceEEee-ccccccc------cCCCcHHHHHHHHHHHHhhhhhcCCceEEE
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM-----GIEPVIMS-AGELESE------RAGEPGKLIRERYRTASQVVQNQGKMSCLM 122 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~-----g~~~i~vs-~~eL~s~------~~GEser~IR~~F~~A~~~~~~~gaPcILF 122 (321)
.+++.||+|+|||++.+|++... +-.++.+- ..||.-+ +....+-...++.+.|.. -.|..|+
T Consensus 146 nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El~~~~~n~v~l~~~~~~~~~~lv~~aLR-----~~PD~Ii 220 (323)
T PRK13833 146 NIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQCAAENAVALHTSDTVDMARLLKSTMR-----LRPDRII 220 (323)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCcccccCCCCEEEeccCCCcCHHHHHHHHhC-----CCCCEEE
Confidence 55799999999999999999886 23444443 3443311 111122234555665653 4899999
Q ss_pred eecc
Q 020787 123 INDI 126 (321)
Q Consensus 123 IDEI 126 (321)
+.||
T Consensus 221 vGEi 224 (323)
T PRK13833 221 VGEV 224 (323)
T ss_pred Eeec
Confidence 9998
No 474
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=96.25 E-value=0.0096 Score=51.61 Aligned_cols=23 Identities=26% Similarity=0.232 Sum_probs=19.9
Q ss_pred HhccccCCCCcHHHHHHHHHHHc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM 77 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~ 77 (321)
...|.||||+|||+++-.+|..+
T Consensus 34 l~~i~g~~g~GKT~~~~~l~~~~ 56 (193)
T PF13481_consen 34 LTLIAGPPGSGKTTLALQLAAAL 56 (193)
T ss_dssp EEEEEECSTSSHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 67899999999999998877655
No 475
>PLN02165 adenylate isopentenyltransferase
Probab=96.24 E-value=0.0025 Score=62.95 Aligned_cols=33 Identities=21% Similarity=0.156 Sum_probs=28.9
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeecc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAG 87 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~ 87 (321)
++.|.||+|+|||.++.++|+.++..+|....-
T Consensus 45 iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs~ 77 (334)
T PLN02165 45 VVVIMGATGSGKSRLSVDLATRFPSEIINSDKM 77 (334)
T ss_pred EEEEECCCCCcHHHHHHHHHHHcCCceecCChh
Confidence 789999999999999999999999877665443
No 476
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=96.24 E-value=0.0013 Score=54.04 Aligned_cols=25 Identities=24% Similarity=0.246 Sum_probs=22.6
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGI 79 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~ 79 (321)
+++|.||+|||||++.++++.....
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~~~~ 37 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGLLPP 37 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSSHE
T ss_pred EEEEEccCCCccccceeeecccccc
Confidence 7899999999999999999987654
No 477
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=96.23 E-value=0.026 Score=54.79 Aligned_cols=111 Identities=10% Similarity=0.046 Sum_probs=68.1
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceE--------Eeecccccccc-CCC----cHHHHHHHHHHHHhhhhhcCCceEE
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPV--------IMSAGELESER-AGE----PGKLIRERYRTASQVVQNQGKMSCL 121 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i--------~vs~~eL~s~~-~GE----ser~IR~~F~~A~~~~~~~gaPcIL 121 (321)
-++++||+|+||+.+|.+.|..+-+.-- .-+-+|+.-=. .|. +=..+|++-+++.... ..+.--|+
T Consensus 21 AyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~p-~e~~~kv~ 99 (290)
T PRK05917 21 AIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRAIKKQIWIHP-YESPYKIY 99 (290)
T ss_pred eEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHHHHHHhhCc-cCCCceEE
Confidence 4689999999999999999998865210 00112221000 111 2446677766654321 13455799
Q ss_pred EeecccccCCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccccCCC
Q 020787 122 MINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIR 192 (321)
Q Consensus 122 FIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpALlR 192 (321)
+||+.|.... .-...||..+..| .+++.+|..|+.++.|.|.++=
T Consensus 100 ii~~ad~mt~------------~AaNaLLK~LEEP--------------p~~~~fiL~~~~~~~ll~TI~S 144 (290)
T PRK05917 100 IIHEADRMTL------------DAISAFLKVLEDP--------------PQHGVIILTSAKPQRLPPTIRS 144 (290)
T ss_pred EEechhhcCH------------HHHHHHHHHhhcC--------------CCCeEEEEEeCChhhCcHHHHh
Confidence 9999998642 1223455555532 4577777788889999988653
No 478
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=96.23 E-value=0.013 Score=61.35 Aligned_cols=24 Identities=21% Similarity=0.264 Sum_probs=22.0
Q ss_pred HhccccCCCCcHHHHHHHHHHHcC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMG 78 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g 78 (321)
+++|-||+|||||+|.++++....
T Consensus 53 ~~aI~G~sGsGKSTLL~~L~g~~~ 76 (617)
T TIGR00955 53 LLAVMGSSGAGKTTLMNALAFRSP 76 (617)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 899999999999999999998653
No 479
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=96.22 E-value=0.0049 Score=63.37 Aligned_cols=23 Identities=39% Similarity=0.440 Sum_probs=21.5
Q ss_pred HhccccCCCCcHHHHHHHHHHHc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM 77 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~ 77 (321)
+++|.||+|||||++++++++..
T Consensus 343 ~~~ivG~sGsGKSTLl~ll~g~~ 365 (569)
T PRK10789 343 MLGICGPTGSGKSTLLSLIQRHF 365 (569)
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 89999999999999999999765
No 480
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=96.20 E-value=0.0023 Score=61.02 Aligned_cols=36 Identities=25% Similarity=0.326 Sum_probs=26.6
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCC--ceEEeeccccc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGI--EPVIMSAGELE 90 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~--~~i~vs~~eL~ 90 (321)
.|||.||+|||||+|+|++|.-..- -=|.+.+.++.
T Consensus 35 ~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~ 72 (252)
T COG1124 35 TLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLA 72 (252)
T ss_pred EEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccC
Confidence 8999999999999999999864433 23444444444
No 481
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=96.20 E-value=0.0052 Score=63.68 Aligned_cols=32 Identities=22% Similarity=0.148 Sum_probs=29.1
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeec
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSA 86 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~ 86 (321)
.+.|-|+||||||++.+.+|+.+|.+|+-+..
T Consensus 8 ~i~LiG~~GaGKttvg~~LA~~L~~~fiD~D~ 39 (542)
T PRK14021 8 QAVIIGMMGAGKTRVGKEVAQMMRLPFADADV 39 (542)
T ss_pred cEEEECCCCCCHHHHHHHHHHHhCCCEEEchH
Confidence 46688999999999999999999999998764
No 482
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=96.20 E-value=0.0038 Score=63.81 Aligned_cols=58 Identities=17% Similarity=0.221 Sum_probs=36.8
Q ss_pred HhccccCCCCcHHHHHHHHHHH----cCCceEEeeccccccccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeeccccc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQA----MGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAG 129 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e----~g~~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg 129 (321)
-+.+.||||||||.++.+++.. .| --++.+.|+ -++-. ...+.-+...+|.|||+--.
T Consensus 211 Nli~lGp~GTGKThla~~l~~~~a~~sG---~f~T~a~Lf-----------~~L~~---~~lg~v~~~DlLI~DEvgyl 272 (449)
T TIGR02688 211 NLIELGPKGTGKSYIYNNLSPYVILISG---GTITVAKLF-----------YNIST---RQIGLVGRWDVVAFDEVATL 272 (449)
T ss_pred cEEEECCCCCCHHHHHHHHhHHHHHHcC---CcCcHHHHH-----------HHHHH---HHHhhhccCCEEEEEcCCCC
Confidence 6788999999999999997766 23 222233333 22221 22222357899999999763
No 483
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=96.19 E-value=0.0036 Score=56.10 Aligned_cols=29 Identities=24% Similarity=0.407 Sum_probs=25.3
Q ss_pred cCCCCcHHHHHHHHHHHcCCceEEeeccccc
Q 020787 60 GGKGQGKSFQTELIFQAMGIEPVIMSAGELE 90 (321)
Q Consensus 60 GPPGcGKTllaravA~e~g~~~i~vs~~eL~ 90 (321)
|..|||||+.++++|+++|+.|| .|-+|.
T Consensus 2 GVsG~GKStvg~~lA~~lg~~fi--dGDdlH 30 (161)
T COG3265 2 GVSGSGKSTVGSALAERLGAKFI--DGDDLH 30 (161)
T ss_pred CCCccCHHHHHHHHHHHcCCcee--cccccC
Confidence 88999999999999999999986 455555
No 484
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.15 E-value=0.015 Score=56.46 Aligned_cols=22 Identities=18% Similarity=0.135 Sum_probs=19.7
Q ss_pred hHhccccCCCCcHHHHHHHHHH
Q 020787 54 ASLCIWGGKGQGKSFQTELIFQ 75 (321)
Q Consensus 54 ~iLgL~GPPGcGKTllaravA~ 75 (321)
++..|+||||||||.+|..+|.
T Consensus 97 ~i~~i~G~~g~GKT~l~~~~~~ 118 (316)
T TIGR02239 97 SITEIFGEFRTGKTQLCHTLAV 118 (316)
T ss_pred eEEEEECCCCCCcCHHHHHHHH
Confidence 4788999999999999998875
No 485
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.14 E-value=0.011 Score=56.24 Aligned_cols=32 Identities=16% Similarity=0.325 Sum_probs=25.0
Q ss_pred HhccccCCCCcHHHHHHHHHHHc----C-CceEEeec
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM----G-IEPVIMSA 86 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~----g-~~~i~vs~ 86 (321)
+++|.||+|+|||+++..+|..+ | ..+..++.
T Consensus 196 vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~ 232 (282)
T TIGR03499 196 VIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITT 232 (282)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEEC
Confidence 88899999999999998888755 4 45555554
No 486
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=96.14 E-value=0.0042 Score=56.13 Aligned_cols=33 Identities=30% Similarity=0.491 Sum_probs=26.8
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeeccccc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELE 90 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~ 90 (321)
++||.|++|||||++++.++. .|++ ++++.++.
T Consensus 3 ~igitG~igsGKst~~~~l~~-~g~~--vid~D~i~ 35 (200)
T PRK14734 3 RIGLTGGIGSGKSTVADLLSS-EGFL--IVDADQVA 35 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCe--EEeCcHHH
Confidence 589999999999999999997 6765 46666443
No 487
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.12 E-value=0.016 Score=51.56 Aligned_cols=75 Identities=23% Similarity=0.434 Sum_probs=47.9
Q ss_pred hccccCCCCcHHHHHHHHHHH---cCCceEE---eecc----cc---------ccccCC--------CcH---HHHHHHH
Q 020787 56 LCIWGGKGQGKSFQTELIFQA---MGIEPVI---MSAG----EL---------ESERAG--------EPG---KLIRERY 105 (321)
Q Consensus 56 LgL~GPPGcGKTllaravA~e---~g~~~i~---vs~~----eL---------~s~~~G--------Ese---r~IR~~F 105 (321)
+-+|++||.|||++|-++|-. .|..... ++++ |+ .=-..| +++ +..++.+
T Consensus 5 i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l~~v~~~~~g~~~~~~~~~~~~~~~~a~~~~ 84 (159)
T cd00561 5 IQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGGWKYGELKALERLPNIEIHRMGRGFFWTTENDEEDIAAAAEGW 84 (159)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCCCccCHHHHHHhCCCcEEEECCCCCccCCCChHHHHHHHHHHH
Confidence 457999999999999665533 2444444 5653 10 000011 122 3567788
Q ss_pred HHHHhhhhhcCCceEEEeecccccCC
Q 020787 106 RTASQVVQNQGKMSCLMINDIDAGLG 131 (321)
Q Consensus 106 ~~A~~~~~~~gaPcILFIDEIDAg~~ 131 (321)
+.|++.++ .+...+|++|||=....
T Consensus 85 ~~a~~~~~-~~~~dLlVLDEi~~a~~ 109 (159)
T cd00561 85 AFAKEAIA-SGEYDLVILDEINYALG 109 (159)
T ss_pred HHHHHHHh-cCCCCEEEEechHhHhh
Confidence 88888775 67899999999977543
No 488
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=96.12 E-value=0.0075 Score=59.60 Aligned_cols=53 Identities=11% Similarity=0.115 Sum_probs=39.8
Q ss_pred hccccCCCCcHHHHHHHHHHH----cCCceEEeeccccc-----cccCCCcHHHHHHHHHHH
Q 020787 56 LCIWGGKGQGKSFQTELIFQA----MGIEPVIMSAGELE-----SERAGEPGKLIRERYRTA 108 (321)
Q Consensus 56 LgL~GPPGcGKTllaravA~e----~g~~~i~vs~~eL~-----s~~~GEser~IR~~F~~A 108 (321)
..|.|+||||||+++++++.. .|.++.+++.-+++ +.-.|-+...+=..||..
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i~~~~~~~~~~~~~~~~~k~~R~~ 63 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDIIPEAAFELDQSREIPSQWKQFRQE 63 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEcccccccccchhhhcCCCcHHHHHHHHHH
Confidence 458899999999999999854 56778889998888 555555555555566643
No 489
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=96.10 E-value=0.015 Score=61.02 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=21.7
Q ss_pred HhccccCCCCcHHHHHHHHHHHcC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMG 78 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g 78 (321)
.-.|.||+|||||++..++++.+-
T Consensus 349 ~talvG~SGaGKSTLl~lL~G~~~ 372 (559)
T COG4988 349 LTALVGASGAGKSTLLNLLLGFLA 372 (559)
T ss_pred EEEEECCCCCCHHHHHHHHhCcCC
Confidence 678999999999999999998775
No 490
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=96.10 E-value=0.017 Score=58.94 Aligned_cols=24 Identities=25% Similarity=0.433 Sum_probs=22.2
Q ss_pred HhccccCCCCcHHHHHHHHHHHcC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMG 78 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g 78 (321)
.++|.||+|||||+|++++++.+.
T Consensus 368 ~i~IvG~sGsGKSTLlklL~gl~~ 391 (576)
T TIGR02204 368 TVALVGPSGAGKSTLFQLLLRFYD 391 (576)
T ss_pred EEEEECCCCCCHHHHHHHHHhccC
Confidence 889999999999999999998764
No 491
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.09 E-value=0.013 Score=56.01 Aligned_cols=65 Identities=15% Similarity=0.191 Sum_probs=44.8
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeeccccccccCCCc--HHHHHHHHHHHHhhhhhcCCceEEEeeccc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEP--GKLIRERYRTASQVVQNQGKMSCLMINDID 127 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~~~GEs--er~IR~~F~~A~~~~~~~gaPcILFIDEID 127 (321)
-++|-|++|+||++++|++|.-++..++.+..+. ..|-. ..-++.++.+|. .+++|++++|.|-+
T Consensus 33 h~LLvG~~GsGr~sl~rLaa~i~~~~~~~i~~~~----~y~~~~f~~dLk~~~~~ag----~~~~~~vfll~d~q 99 (268)
T PF12780_consen 33 HALLVGVGGSGRQSLARLAAFICGYEVFQIEITK----GYSIKDFKEDLKKALQKAG----IKGKPTVFLLTDSQ 99 (268)
T ss_dssp EEEEECTTTSCHHHHHHHHHHHTTEEEE-TTTST----TTHHHHHHHHHHHHHHHHH----CS-S-EEEEEECCC
T ss_pred CeEEecCCCccHHHHHHHHHHHhccceEEEEeeC----CcCHHHHHHHHHHHHHHHh----ccCCCeEEEecCcc
Confidence 3679999999999999999999999999877542 12222 234555555553 37899999998854
No 492
>TIGR00962 atpA proton translocating ATP synthase, F1 alpha subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. The alpha-subunit contains a highly conserved adenine-specific noncatalytic nucleotide-binding domain. The conserved amino acid sequence is Gly-X-X-X-X-Gly-Lys. Proton translocating ATP synthase F1, alpha subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), B subunit.
Probab=96.09 E-value=0.013 Score=60.77 Aligned_cols=68 Identities=15% Similarity=0.281 Sum_probs=49.6
Q ss_pred HhccccCCCCcHHHHH-HHHHHHcCCceEEeeccccccccCCCcHHHHHHHHHH--------------------------
Q 020787 55 SLCIWGGKGQGKSFQT-ELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRT-------------------------- 107 (321)
Q Consensus 55 iLgL~GPPGcGKTlla-ravA~e~g~~~i~vs~~eL~s~~~GEser~IR~~F~~-------------------------- 107 (321)
.+||.|++|||||.|| .++++..+..+++|-+. +||..+-+++..++
T Consensus 163 r~~I~g~~g~GKt~Lal~~i~~~~~~dv~~V~~~------IGer~rev~e~~~~~~~~~~l~~tvvV~atsd~p~~~r~~ 236 (501)
T TIGR00962 163 RELIIGDRQTGKTAVAIDTIINQKDSDVYCVYVA------IGQKASTVAQVVRKLEEHGAMDYTIVVAATASDSASLQYL 236 (501)
T ss_pred EEEeecCCCCCccHHHHHHHHhhcCCCeEEEEEE------ccCChHHHHHHHHHHHhcCccceeEEEEecCCCCHHHHHH
Confidence 7899999999999994 89999998888755543 45555555544443
Q ss_pred -------HHhhhhhcCCceEEEeecccc
Q 020787 108 -------ASQVVQNQGKMSCLMINDIDA 128 (321)
Q Consensus 108 -------A~~~~~~~gaPcILFIDEIDA 128 (321)
.+|..+.+|+-.+|++|++-.
T Consensus 237 a~~~a~aiAEyfrd~G~~VLlv~Ddltr 264 (501)
T TIGR00962 237 APYTGCTMAEYFRDNGKHALIIYDDLSK 264 (501)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEecchHH
Confidence 123334578999999998875
No 493
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.08 E-value=0.012 Score=53.39 Aligned_cols=22 Identities=18% Similarity=0.286 Sum_probs=16.7
Q ss_pred HhccccCCCCcHHHHHHHHHHH
Q 020787 55 SLCIWGGKGQGKSFQTELIFQA 76 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e 76 (321)
++.|.||+|+|||+.+--+|..
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~ 24 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAAR 24 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCchHhHHHHHHHH
Confidence 3578999999999887555543
No 494
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=96.07 E-value=0.0036 Score=66.66 Aligned_cols=35 Identities=26% Similarity=0.320 Sum_probs=28.0
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeecccccc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELES 91 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s 91 (321)
+..|-||||||||++|+++|+++|..++ +.+++..
T Consensus 3 ~i~I~G~~GsGKST~ak~la~~l~~~~~--~~g~~~r 37 (712)
T PRK09518 3 IVAIDGPAGVGKSSVSRALAQYLGYAYL--DTGAMYR 37 (712)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEe--ecCcEeH
Confidence 4578999999999999999999996554 4454553
No 495
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=96.07 E-value=0.014 Score=67.21 Aligned_cols=25 Identities=28% Similarity=0.441 Sum_probs=23.1
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGI 79 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~ 79 (321)
.++|.||+|||||+++++++.-...
T Consensus 1196 ~vAIVG~SGsGKSTl~~LL~r~ydp 1220 (1466)
T PTZ00265 1196 TTAIVGETGSGKSTVMSLLMRFYDL 1220 (1466)
T ss_pred EEEEECCCCCCHHHHHHHHHHhCCC
Confidence 8899999999999999999997775
No 496
>PTZ00301 uridine kinase; Provisional
Probab=96.06 E-value=0.0045 Score=56.90 Aligned_cols=23 Identities=30% Similarity=0.401 Sum_probs=21.3
Q ss_pred HhccccCCCCcHHHHHHHHHHHc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM 77 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~ 77 (321)
++||-||||+|||++|+.+++++
T Consensus 5 iIgIaG~SgSGKTTla~~l~~~l 27 (210)
T PTZ00301 5 VIGISGASGSGKSSLSTNIVSEL 27 (210)
T ss_pred EEEEECCCcCCHHHHHHHHHHHH
Confidence 67999999999999999998876
No 497
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=96.06 E-value=0.0016 Score=64.67 Aligned_cols=23 Identities=22% Similarity=0.229 Sum_probs=20.4
Q ss_pred HhccccCCCCcHHHHHHHHHHHc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM 77 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~ 77 (321)
++.|-||+|||||++.|+||.=-
T Consensus 33 f~~lLGPSGcGKTTlLR~IAGfe 55 (352)
T COG3842 33 FVTLLGPSGCGKTTLLRMIAGFE 55 (352)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 67899999999999999999643
No 498
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=96.05 E-value=0.016 Score=61.05 Aligned_cols=24 Identities=33% Similarity=0.368 Sum_probs=22.1
Q ss_pred HhccccCCCCcHHHHHHHHHHHcC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMG 78 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g 78 (321)
..+|.||+|||||++++++++...
T Consensus 485 ~vaivG~sGsGKSTL~~ll~g~~~ 508 (694)
T TIGR01846 485 FIGIVGPSGSGKSTLTKLLQRLYT 508 (694)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 889999999999999999998764
No 499
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=96.05 E-value=0.015 Score=53.60 Aligned_cols=58 Identities=21% Similarity=0.278 Sum_probs=42.4
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeec-----------------------------------cccccccCCCcHH
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSA-----------------------------------GELESERAGEPGK 99 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~-----------------------------------~eL~s~~~GEser 99 (321)
++.|.||+|+|||++++++.++-+. .++||. .++..-|.|-|-.
T Consensus 6 l~vlsgPSG~GKsTl~k~L~~~~~l-~~SVS~TTR~pR~gEv~G~dY~Fvs~~EF~~~i~~~~fLE~a~~~gnyYGT~~~ 84 (191)
T COG0194 6 LIVLSGPSGVGKSTLVKALLEDDKL-RFSVSATTRKPRPGEVDGVDYFFVTEEEFEELIERDEFLEWAEYHGNYYGTSRE 84 (191)
T ss_pred EEEEECCCCCCHHHHHHHHHhhcCe-EEEEEeccCCCCCCCcCCceeEeCCHHHHHHHHhcCCcEEEEEEcCCcccCcHH
Confidence 4678999999999999999999833 344554 5566678888887
Q ss_pred HHHHHHHHHHhhhhhcCCceEE
Q 020787 100 LIRERYRTASQVVQNQGKMSCL 121 (321)
Q Consensus 100 ~IR~~F~~A~~~~~~~gaPcIL 121 (321)
-|.+... .|+.+||
T Consensus 85 ~ve~~~~--------~G~~vil 98 (191)
T COG0194 85 PVEQALA--------EGKDVIL 98 (191)
T ss_pred HHHHHHh--------cCCeEEE
Confidence 7765543 4566665
No 500
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=96.04 E-value=0.01 Score=53.33 Aligned_cols=37 Identities=14% Similarity=0.106 Sum_probs=32.2
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeecccccc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELES 91 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s 91 (321)
|+.|.|||-.|||++|+++.+.+.-+++.++.-.+.+
T Consensus 3 iI~LNG~sSSGKSsia~~Lq~~~~~p~~~l~~D~f~~ 39 (174)
T PF07931_consen 3 IIILNGPSSSGKSSIARALQERLPEPWLHLSVDTFVD 39 (174)
T ss_dssp EEEEEE-TTSSHHHHHHHHHHHSSS-EEEEEHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHhCcCCeEEEecChHHh
Confidence 6789999999999999999999999999999877666
Done!