Query 020787
Match_columns 321
No_of_seqs 179 out of 573
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 08:11:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020787.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020787hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3t15_A Ribulose bisphosphate c 100.0 1.8E-63 6E-68 461.3 18.4 272 38-314 1-293 (293)
2 4b4t_J 26S protease regulatory 100.0 3.8E-45 1.3E-49 359.4 20.4 184 55-259 184-372 (405)
3 4b4t_I 26S protease regulatory 100.0 1.6E-43 5.4E-48 350.9 20.9 184 55-259 218-406 (437)
4 4b4t_L 26S protease subunit RP 100.0 3.5E-43 1.2E-47 347.9 21.5 184 55-259 217-405 (437)
5 4b4t_M 26S protease regulatory 100.0 1.6E-43 5.5E-48 350.0 19.1 184 55-259 217-405 (434)
6 4b4t_H 26S protease regulatory 100.0 5.8E-43 2E-47 349.2 19.2 184 55-259 245-433 (467)
7 4b4t_K 26S protease regulatory 100.0 1.5E-42 5.2E-47 342.4 14.8 184 55-259 208-397 (428)
8 3cf2_A TER ATPase, transitiona 100.0 6.3E-43 2.1E-47 367.6 9.3 225 55-300 513-760 (806)
9 3cf2_A TER ATPase, transitiona 100.0 8.1E-38 2.8E-42 328.9 13.7 182 55-258 240-424 (806)
10 3thg_A Ribulose bisphosphate c 100.0 6.4E-36 2.2E-40 246.1 8.1 102 204-308 6-107 (107)
11 1xwi_A SKD1 protein; VPS4B, AA 100.0 1.8E-33 6.1E-38 263.9 17.1 183 54-259 46-233 (322)
12 2x8a_A Nuclear valosin-contain 100.0 9.5E-34 3.2E-38 261.1 11.3 185 56-260 47-237 (274)
13 3cf0_A Transitional endoplasmi 100.0 2.1E-33 7.2E-38 259.5 10.2 165 55-236 51-223 (301)
14 3eie_A Vacuolar protein sortin 100.0 7E-33 2.4E-37 257.8 12.4 181 55-258 53-237 (322)
15 2qp9_X Vacuolar protein sortin 100.0 2.5E-32 8.6E-37 259.2 14.7 182 55-259 86-271 (355)
16 2zan_A Vacuolar protein sortin 100.0 2.5E-31 8.4E-36 259.9 14.3 182 55-259 169-355 (444)
17 2ce7_A Cell division protein F 100.0 8.6E-31 2.9E-35 261.2 16.5 178 55-253 51-233 (476)
18 1ypw_A Transitional endoplasmi 100.0 2.1E-32 7.3E-37 286.2 5.0 220 55-299 513-759 (806)
19 1lv7_A FTSH; alpha/beta domain 100.0 2E-29 6.8E-34 225.0 18.4 182 55-257 47-233 (257)
20 3h4m_A Proteasome-activating n 100.0 3.5E-29 1.2E-33 225.1 17.8 180 55-258 53-240 (285)
21 2qz4_A Paraplegin; AAA+, SPG7, 100.0 1.2E-29 4E-34 224.1 13.5 178 55-253 41-226 (262)
22 3hu3_A Transitional endoplasmi 100.0 2.4E-29 8.1E-34 250.7 16.0 184 55-260 240-426 (489)
23 3b9p_A CG5977-PA, isoform A; A 100.0 8.2E-29 2.8E-33 224.4 13.9 184 55-259 56-243 (297)
24 2dhr_A FTSH; AAA+ protein, hex 100.0 1.4E-28 4.8E-33 246.5 14.1 178 55-253 66-248 (499)
25 1ixz_A ATP-dependent metallopr 100.0 1E-27 3.5E-32 213.6 16.2 181 56-257 52-237 (254)
26 3d8b_A Fidgetin-like protein 1 99.9 1.4E-27 4.9E-32 226.0 15.9 184 55-260 119-306 (357)
27 3vfd_A Spastin; ATPase, microt 99.9 8.9E-28 3E-32 228.7 14.3 184 55-260 150-337 (389)
28 2r62_A Cell division protease 99.9 1.4E-28 4.7E-33 219.9 5.7 178 55-252 46-229 (268)
29 1iy2_A ATP-dependent metallopr 99.9 3E-26 1E-30 207.9 16.6 180 56-256 76-260 (278)
30 1ypw_A Transitional endoplasmi 99.9 3.3E-25 1.1E-29 231.9 17.6 159 55-231 240-401 (806)
31 2c9o_A RUVB-like 1; hexameric 99.9 4.9E-28 1.7E-32 236.4 -4.0 162 55-235 65-252 (456)
32 1d2n_A N-ethylmaleimide-sensit 99.9 2.9E-22 9.9E-27 180.4 12.3 159 55-235 66-228 (272)
33 1g41_A Heat shock protein HSLU 99.9 2.2E-22 7.7E-27 199.7 5.4 131 55-212 52-188 (444)
34 3syl_A Protein CBBX; photosynt 99.9 1.4E-21 4.7E-26 177.2 9.7 150 55-231 69-234 (309)
35 1ofh_A ATP-dependent HSL prote 99.8 2.5E-20 8.7E-25 167.3 10.2 153 55-213 52-212 (310)
36 3m6a_A ATP-dependent protease 99.8 3.2E-20 1.1E-24 186.3 10.1 188 55-258 110-321 (543)
37 3hws_A ATP-dependent CLP prote 99.8 2.8E-20 9.5E-25 175.0 5.7 100 55-155 53-156 (363)
38 3pfi_A Holliday junction ATP-d 99.8 1.1E-18 3.7E-23 160.7 11.2 155 55-236 57-219 (338)
39 1jbk_A CLPB protein; beta barr 99.8 1.6E-19 5.3E-24 148.2 3.3 132 55-212 45-194 (195)
40 3uk6_A RUVB-like 2; hexameric 99.7 2E-18 6.8E-23 160.0 9.4 149 55-232 72-290 (368)
41 1um8_A ATP-dependent CLP prote 99.7 8.1E-18 2.8E-22 158.6 6.9 139 55-197 74-223 (376)
42 1qvr_A CLPB protein; coiled co 99.7 4.1E-17 1.4E-21 170.8 10.7 137 55-217 193-346 (854)
43 1r6b_X CLPA protein; AAA+, N-t 99.7 1.3E-16 4.6E-21 163.5 13.0 150 55-230 209-382 (758)
44 1hqc_A RUVB; extended AAA-ATPa 99.7 2.8E-16 9.4E-21 142.9 12.6 156 55-236 40-203 (324)
45 2p65_A Hypothetical protein PF 99.7 1.7E-17 5.9E-22 136.7 3.9 119 55-198 45-180 (187)
46 3u61_B DNA polymerase accessor 99.7 8.8E-17 3E-21 147.4 8.4 147 55-235 50-207 (324)
47 3pxg_A Negative regulator of g 99.6 1.5E-16 5.1E-21 156.4 7.7 133 56-230 204-358 (468)
48 3pxi_A Negative regulator of g 99.6 1.4E-16 4.8E-21 164.1 7.8 133 55-230 203-358 (758)
49 4fcw_A Chaperone protein CLPB; 99.6 8.5E-16 2.9E-20 138.9 11.3 158 55-233 49-258 (311)
50 3pvs_A Replication-associated 99.6 4.5E-16 1.5E-20 153.3 9.9 143 55-235 52-206 (447)
51 1l8q_A Chromosomal replication 99.6 3.4E-16 1.2E-20 144.1 8.4 149 55-233 39-198 (324)
52 2v1u_A Cell division control p 99.6 1.3E-15 4.5E-20 139.6 11.8 152 55-230 46-232 (387)
53 2chg_A Replication factor C sm 99.6 3.2E-15 1.1E-19 125.2 12.4 146 56-235 41-195 (226)
54 1sxj_A Activator 1 95 kDa subu 99.6 1.8E-16 6.1E-21 157.2 5.4 154 54-235 78-243 (516)
55 1r6b_X CLPA protein; AAA+, N-t 99.6 1.2E-15 4.2E-20 156.4 11.2 156 55-235 490-697 (758)
56 2z4s_A Chromosomal replication 99.6 1.2E-15 4.2E-20 149.0 7.8 159 55-243 132-305 (440)
57 3pxi_A Negative regulator of g 99.6 6.9E-15 2.4E-19 151.5 13.7 151 55-231 523-701 (758)
58 1njg_A DNA polymerase III subu 99.6 9.6E-15 3.3E-19 122.9 10.3 145 55-235 47-219 (250)
59 3bos_A Putative DNA replicatio 99.6 5.3E-15 1.8E-19 126.8 7.6 142 55-235 54-208 (242)
60 3te6_A Regulatory protein SIR3 99.5 7.9E-15 2.7E-19 139.7 8.9 133 55-217 47-212 (318)
61 2qby_B CDC6 homolog 3, cell di 99.5 2.1E-14 7.3E-19 132.8 10.2 143 55-231 47-229 (384)
62 2chq_A Replication factor C sm 99.5 2.3E-14 7.8E-19 128.7 9.6 146 56-235 41-195 (319)
63 2r44_A Uncharacterized protein 99.5 8.4E-15 2.9E-19 134.9 6.7 137 55-218 48-200 (331)
64 1sxj_D Activator 1 41 kDa subu 99.5 2.9E-14 1E-18 130.4 8.9 147 55-235 60-226 (353)
65 1g8p_A Magnesium-chelatase 38 99.5 3.6E-14 1.2E-18 130.0 9.1 144 56-215 48-231 (350)
66 3n70_A Transport activator; si 99.5 8.2E-15 2.8E-19 121.5 4.3 99 56-198 27-128 (145)
67 2qby_A CDC6 homolog 1, cell di 99.5 6.9E-14 2.4E-18 127.8 10.0 151 55-231 47-229 (386)
68 1fnn_A CDC6P, cell division co 99.5 9.3E-14 3.2E-18 128.1 10.7 152 55-233 46-227 (389)
69 3cmw_A Protein RECA, recombina 99.5 9.9E-15 3.4E-19 163.6 4.8 111 56-185 1085-1220(1706)
70 1in4_A RUVB, holliday junction 99.5 1.8E-13 6.2E-18 128.1 12.7 157 54-237 52-216 (334)
71 3co5_A Putative two-component 99.5 4.9E-15 1.7E-19 122.8 0.7 98 55-198 29-126 (143)
72 2bjv_A PSP operon transcriptio 99.5 2.9E-14 1E-18 127.4 5.4 134 55-210 31-184 (265)
73 1qvr_A CLPB protein; coiled co 99.5 2.1E-13 7.3E-18 142.7 12.1 153 55-231 590-796 (854)
74 4akg_A Glutathione S-transfera 99.4 5.6E-14 1.9E-18 162.8 7.7 142 55-217 1269-1432(2695)
75 1iqp_A RFCS; clamp loader, ext 99.4 1.3E-13 4.5E-18 124.2 8.3 146 56-235 49-203 (327)
76 1sxj_B Activator 1 37 kDa subu 99.4 1.8E-13 6.2E-18 123.1 7.8 147 56-236 45-201 (323)
77 3nbx_X ATPase RAVA; AAA+ ATPas 99.4 3E-14 1E-18 142.8 2.7 141 55-216 43-196 (500)
78 1ojl_A Transcriptional regulat 99.4 1.4E-13 4.6E-18 128.2 6.7 150 55-231 27-214 (304)
79 1jr3_A DNA polymerase III subu 99.4 3.8E-13 1.3E-17 123.9 9.3 147 55-236 40-213 (373)
80 3f9v_A Minichromosome maintena 99.4 1.1E-13 3.8E-18 140.7 4.1 136 56-218 330-492 (595)
81 1sxj_E Activator 1 40 kDa subu 99.3 2.5E-12 8.7E-17 118.4 9.9 147 56-235 39-228 (354)
82 1a5t_A Delta prime, HOLB; zinc 99.3 1.6E-11 5.3E-16 115.0 12.9 146 55-235 26-196 (334)
83 1sxj_C Activator 1 40 kDa subu 99.2 1.6E-11 5.5E-16 114.1 9.6 142 56-231 49-199 (340)
84 1w5s_A Origin recognition comp 99.2 5.5E-11 1.9E-15 110.6 9.4 160 55-234 52-250 (412)
85 3ec2_A DNA replication protein 99.2 2E-11 6.7E-16 103.1 5.8 65 54-129 39-112 (180)
86 1svm_A Large T antigen; AAA+ f 99.1 4.1E-11 1.4E-15 116.3 6.5 112 55-204 171-284 (377)
87 2vhj_A Ntpase P4, P4; non- hyd 99.1 8.6E-11 2.9E-15 113.2 7.1 115 55-190 125-242 (331)
88 2w58_A DNAI, primosome compone 99.1 3.7E-11 1.3E-15 102.7 2.7 69 55-130 56-128 (202)
89 2gno_A DNA polymerase III, gam 99.0 4.4E-10 1.5E-14 105.5 9.5 133 55-226 20-159 (305)
90 2kjq_A DNAA-related protein; s 99.0 1.9E-10 6.4E-15 97.0 6.1 57 54-130 37-96 (149)
91 2qgz_A Helicase loader, putati 98.9 2.6E-10 9.1E-15 106.5 2.0 68 55-129 154-226 (308)
92 3k1j_A LON protease, ATP-depen 98.8 1E-09 3.4E-14 111.0 2.9 100 117-231 201-325 (604)
93 2qen_A Walker-type ATPase; unk 98.8 4E-08 1.4E-12 88.7 11.9 159 54-237 32-239 (350)
94 2fna_A Conserved hypothetical 98.7 3.5E-08 1.2E-12 89.0 9.0 35 54-88 31-65 (357)
95 3cmu_A Protein RECA, recombina 98.7 1E-08 3.5E-13 117.0 5.0 73 55-132 1429-1520(2050)
96 1ny5_A Transcriptional regulat 98.7 1.9E-08 6.4E-13 96.6 5.8 128 55-209 162-314 (387)
97 2r2a_A Uncharacterized protein 98.6 3.1E-08 1.1E-12 88.0 5.3 122 53-202 5-150 (199)
98 3vkg_A Dynein heavy chain, cyt 98.6 3.5E-08 1.2E-12 116.3 5.9 146 55-217 1306-1470(3245)
99 1tue_A Replication protein E1; 98.5 5.1E-08 1.8E-12 88.9 4.2 100 55-185 60-159 (212)
100 3dzd_A Transcriptional regulat 98.5 2.2E-07 7.4E-12 88.9 8.2 127 55-208 154-304 (368)
101 4akg_A Glutathione S-transfera 98.5 4.2E-07 1.4E-11 106.2 11.0 132 56-212 648-789 (2695)
102 2cvh_A DNA repair and recombin 98.4 9.5E-07 3.3E-11 75.2 9.3 90 36-131 6-119 (220)
103 1ye8_A Protein THEP1, hypothet 98.4 6.8E-07 2.3E-11 77.3 8.3 28 55-82 2-29 (178)
104 3cmu_A Protein RECA, recombina 98.2 1.6E-06 5.4E-11 99.3 8.0 76 55-131 734-824 (2050)
105 1n0w_A DNA repair protein RAD5 98.2 3.2E-06 1.1E-10 73.0 8.2 76 55-131 26-133 (243)
106 2w0m_A SSO2452; RECA, SSPF, un 98.2 6.6E-06 2.3E-10 69.9 9.7 46 36-85 9-58 (235)
107 1qhx_A CPT, protein (chloramph 98.1 2.4E-06 8.2E-11 70.9 5.3 33 55-87 5-37 (178)
108 4a74_A DNA repair and recombin 98.0 6E-06 2.1E-10 70.6 5.6 24 54-77 26-49 (231)
109 2zr9_A Protein RECA, recombina 98.0 8.6E-06 2.9E-10 77.7 7.0 96 33-132 43-154 (349)
110 1zuh_A Shikimate kinase; alpha 98.0 4.5E-06 1.5E-10 69.2 4.1 43 53-97 7-49 (168)
111 1u0j_A DNA replication protein 97.9 1.5E-06 5.1E-11 81.3 0.9 25 55-79 106-130 (267)
112 2ehv_A Hypothetical protein PH 97.9 1.8E-05 6.2E-10 68.4 7.2 32 55-86 32-67 (251)
113 3hr8_A Protein RECA; alpha and 97.9 2.7E-05 9.2E-10 75.1 8.2 94 34-131 44-153 (356)
114 1kag_A SKI, shikimate kinase I 97.8 8.7E-06 3E-10 67.3 3.4 40 55-96 6-45 (173)
115 1pzn_A RAD51, DNA repair and r 97.8 4.1E-05 1.4E-09 72.8 8.5 76 55-130 133-244 (349)
116 3trf_A Shikimate kinase, SK; a 97.8 8.2E-06 2.8E-10 68.3 3.0 41 55-97 7-47 (185)
117 1xp8_A RECA protein, recombina 97.8 6.1E-05 2.1E-09 72.6 9.3 95 33-132 56-167 (366)
118 3cmw_A Protein RECA, recombina 97.8 1.4E-05 4.9E-10 90.4 5.3 76 55-131 734-824 (1706)
119 1cr0_A DNA primase/helicase; R 97.8 7E-05 2.4E-09 67.9 8.5 23 55-77 37-59 (296)
120 2dr3_A UPF0273 protein PH0284; 97.8 9.2E-05 3.1E-09 63.8 8.8 32 55-86 25-59 (247)
121 3kb2_A SPBC2 prophage-derived 97.7 1.1E-05 3.6E-10 66.0 2.6 30 55-84 3-32 (173)
122 3a4m_A L-seryl-tRNA(SEC) kinas 97.7 3.6E-05 1.2E-09 69.3 5.9 53 55-107 6-64 (260)
123 3lw7_A Adenylate kinase relate 97.7 1.2E-05 4.3E-10 64.8 2.1 29 55-84 3-31 (179)
124 1u94_A RECA protein, recombina 97.7 7.3E-05 2.5E-09 71.7 7.7 92 34-132 46-156 (356)
125 3vaa_A Shikimate kinase, SK; s 97.7 1.8E-05 6E-10 68.0 3.0 42 54-97 26-67 (199)
126 3lda_A DNA repair protein RAD5 97.7 0.00013 4.4E-09 71.2 9.2 76 55-131 180-287 (400)
127 2b8t_A Thymidine kinase; deoxy 97.6 0.0001 3.5E-09 66.6 7.6 72 55-128 14-100 (223)
128 1via_A Shikimate kinase; struc 97.6 2E-05 6.7E-10 65.9 2.6 34 55-90 6-39 (175)
129 2iyv_A Shikimate kinase, SK; t 97.6 2.2E-05 7.7E-10 65.7 3.0 40 55-96 4-43 (184)
130 1zp6_A Hypothetical protein AT 97.6 1.4E-05 4.9E-10 67.0 1.7 35 55-89 11-45 (191)
131 2z0h_A DTMP kinase, thymidylat 97.6 4.7E-05 1.6E-09 63.7 4.8 31 56-86 3-36 (197)
132 1jjv_A Dephospho-COA kinase; P 97.6 2.3E-05 7.8E-10 67.0 2.7 33 55-90 4-36 (206)
133 2p5t_B PEZT; postsegregational 97.6 5.9E-05 2E-09 67.5 5.5 35 55-89 34-68 (253)
134 2ze6_A Isopentenyl transferase 97.6 0.00011 3.8E-09 66.3 6.9 32 55-86 3-34 (253)
135 1v5w_A DMC1, meiotic recombina 97.6 0.0001 3.4E-09 69.6 6.9 75 55-130 124-232 (343)
136 3iij_A Coilin-interacting nucl 97.6 2.4E-05 8.1E-10 65.5 2.3 30 55-84 13-42 (180)
137 2pbr_A DTMP kinase, thymidylat 97.6 6.6E-05 2.2E-09 62.4 5.0 31 55-85 2-35 (195)
138 1tev_A UMP-CMP kinase; ploop, 97.6 3.2E-05 1.1E-09 64.2 2.8 34 55-90 5-38 (196)
139 3cm0_A Adenylate kinase; ATP-b 97.5 3E-05 1E-09 64.7 2.6 34 55-90 6-39 (186)
140 1e6c_A Shikimate kinase; phosp 97.5 3.5E-05 1.2E-09 63.4 2.9 40 55-96 4-43 (173)
141 1nlf_A Regulatory protein REPA 97.5 6.8E-05 2.3E-09 67.7 5.0 43 31-77 12-54 (279)
142 1nks_A Adenylate kinase; therm 97.5 9.4E-05 3.2E-09 61.3 5.4 36 55-90 3-41 (194)
143 2bwj_A Adenylate kinase 5; pho 97.5 2.5E-05 8.6E-10 65.5 1.9 34 55-90 14-47 (199)
144 2c95_A Adenylate kinase 1; tra 97.5 2.6E-05 8.8E-10 65.3 1.9 30 55-84 11-40 (196)
145 1qf9_A UMP/CMP kinase, protein 97.5 3.1E-05 1.1E-09 64.2 2.2 49 55-105 8-59 (194)
146 3fb4_A Adenylate kinase; psych 97.5 3.2E-05 1.1E-09 66.4 2.2 29 56-84 3-31 (216)
147 1ly1_A Polynucleotide kinase; 97.5 9.7E-05 3.3E-09 60.7 5.1 29 55-83 4-33 (181)
148 3f8t_A Predicted ATPase involv 97.5 8.5E-06 2.9E-10 82.4 -1.5 118 56-207 242-385 (506)
149 2cdn_A Adenylate kinase; phosp 97.5 3.5E-05 1.2E-09 65.7 2.5 30 55-84 22-51 (201)
150 3dl0_A Adenylate kinase; phosp 97.5 3.7E-05 1.3E-09 66.1 2.6 29 56-84 3-31 (216)
151 1y63_A LMAJ004144AAA protein; 97.5 2.8E-05 9.6E-10 66.0 1.8 30 55-84 12-42 (184)
152 1kht_A Adenylate kinase; phosp 97.5 2.7E-05 9.3E-10 64.6 1.4 24 55-78 5-28 (192)
153 1cke_A CK, MSSA, protein (cyti 97.5 4.5E-05 1.5E-09 65.6 2.8 34 55-90 7-40 (227)
154 1ukz_A Uridylate kinase; trans 97.5 3.7E-05 1.3E-09 65.4 2.2 35 54-90 16-50 (203)
155 3sr0_A Adenylate kinase; phosp 97.5 4.5E-05 1.5E-09 67.7 2.9 35 55-91 2-36 (206)
156 2rhm_A Putative kinase; P-loop 97.5 4.5E-05 1.5E-09 63.7 2.7 29 55-83 7-35 (193)
157 4gp7_A Metallophosphoesterase; 97.5 6.4E-05 2.2E-09 63.5 3.6 18 55-72 11-28 (171)
158 2v54_A DTMP kinase, thymidylat 97.4 3.7E-05 1.3E-09 64.9 1.9 31 55-85 6-37 (204)
159 2z43_A DNA repair and recombin 97.4 0.0002 6.8E-09 66.7 7.0 75 55-130 109-216 (324)
160 1knq_A Gluconate kinase; ALFA/ 97.4 5.4E-05 1.8E-09 62.9 2.8 34 55-90 10-43 (175)
161 3t61_A Gluconokinase; PSI-biol 97.4 5.6E-05 1.9E-09 64.5 2.9 34 54-89 19-52 (202)
162 2vli_A Antibiotic resistance p 97.4 3.8E-05 1.3E-09 63.7 1.8 28 55-82 7-34 (183)
163 2pt5_A Shikimate kinase, SK; a 97.4 5.8E-05 2E-09 62.0 2.9 40 55-96 2-41 (168)
164 2orw_A Thymidine kinase; TMTK, 97.4 7.6E-05 2.6E-09 64.6 3.7 31 55-85 5-38 (184)
165 2if2_A Dephospho-COA kinase; a 97.4 6.4E-05 2.2E-09 63.9 3.1 49 55-106 3-51 (204)
166 1g41_A Heat shock protein HSLU 97.4 0.00043 1.5E-08 68.8 9.5 105 96-213 236-346 (444)
167 3io5_A Recombination and repai 97.4 0.00025 8.4E-09 68.6 7.2 77 55-132 30-126 (333)
168 1aky_A Adenylate kinase; ATP:A 97.4 5.5E-05 1.9E-09 65.5 2.4 35 55-91 6-40 (220)
169 2plr_A DTMP kinase, probable t 97.4 0.00015 5.3E-09 61.0 5.1 26 55-80 6-31 (213)
170 1zd8_A GTP:AMP phosphotransfer 97.4 4.7E-05 1.6E-09 66.4 1.9 30 55-84 9-38 (227)
171 3jvv_A Twitching mobility prot 97.4 0.00013 4.5E-09 70.0 5.1 67 55-126 125-205 (356)
172 3uie_A Adenylyl-sulfate kinase 97.4 0.00018 6.2E-09 61.6 5.5 35 55-89 27-64 (200)
173 4eun_A Thermoresistant glucoki 97.4 6.4E-05 2.2E-09 64.5 2.6 34 55-90 31-64 (200)
174 3umf_A Adenylate kinase; rossm 97.4 5.5E-05 1.9E-09 68.1 1.9 36 55-92 31-66 (217)
175 2eyu_A Twitching motility prot 97.3 8.4E-05 2.9E-09 68.0 3.1 67 55-126 27-107 (261)
176 1jr3_D DNA polymerase III, del 97.3 0.00058 2E-08 63.1 8.6 145 55-235 20-176 (343)
177 2i1q_A DNA repair and recombin 97.3 0.00031 1E-08 64.8 6.7 22 55-76 100-121 (322)
178 3be4_A Adenylate kinase; malar 97.3 7.8E-05 2.7E-09 64.9 2.5 35 55-91 7-41 (217)
179 2zts_A Putative uncharacterize 97.3 0.00058 2E-08 58.7 7.9 48 35-86 15-67 (251)
180 1ak2_A Adenylate kinase isoenz 97.3 8.6E-05 2.9E-09 65.3 2.7 34 55-90 18-51 (233)
181 3ake_A Cytidylate kinase; CMP 97.3 9.6E-05 3.3E-09 62.4 2.9 29 55-83 4-32 (208)
182 3tlx_A Adenylate kinase 2; str 97.3 7.2E-05 2.4E-09 66.9 2.2 36 55-92 31-66 (243)
183 2i3b_A HCR-ntpase, human cance 97.3 7.9E-05 2.7E-09 65.2 2.4 23 55-77 3-25 (189)
184 1gvn_B Zeta; postsegregational 97.3 0.00015 5.2E-09 66.8 4.3 36 54-89 34-69 (287)
185 3crm_A TRNA delta(2)-isopenten 97.3 0.00042 1.4E-08 66.3 7.3 33 55-87 7-39 (323)
186 2jaq_A Deoxyguanosine kinase; 97.3 9.9E-05 3.4E-09 61.8 2.6 28 56-83 3-30 (205)
187 3vkg_A Dynein heavy chain, cyt 97.3 0.00081 2.8E-08 80.2 11.0 136 57-212 608-749 (3245)
188 2yvu_A Probable adenylyl-sulfa 97.3 0.00038 1.3E-08 58.5 6.2 35 55-89 15-52 (186)
189 1e4v_A Adenylate kinase; trans 97.3 9.9E-05 3.4E-09 63.8 2.6 29 56-84 3-31 (214)
190 1z6t_A APAF-1, apoptotic prote 97.3 0.00028 9.6E-09 69.4 6.0 21 55-75 149-169 (591)
191 3tau_A Guanylate kinase, GMP k 97.3 0.00017 5.8E-09 62.6 4.0 25 55-79 10-34 (208)
192 3gmt_A Adenylate kinase; ssgci 97.3 9E-05 3.1E-09 67.7 2.2 35 55-91 10-44 (230)
193 2pez_A Bifunctional 3'-phospho 97.3 0.00013 4.4E-09 61.1 3.0 34 55-88 7-43 (179)
194 2r6a_A DNAB helicase, replicat 97.2 0.00062 2.1E-08 66.3 8.2 31 55-85 205-239 (454)
195 2bbw_A Adenylate kinase 4, AK4 97.2 0.00012 4E-09 64.8 2.7 35 54-90 28-62 (246)
196 1sky_E F1-ATPase, F1-ATP synth 97.2 0.00029 1E-08 70.7 5.8 68 55-128 153-256 (473)
197 1uj2_A Uridine-cytidine kinase 97.2 0.00016 5.6E-09 64.4 3.4 38 55-92 24-69 (252)
198 1m7g_A Adenylylsulfate kinase; 97.2 0.00042 1.4E-08 59.8 5.8 35 55-89 27-65 (211)
199 2xb4_A Adenylate kinase; ATP-b 97.2 0.00014 4.9E-09 63.7 2.8 35 56-92 3-37 (223)
200 1zak_A Adenylate kinase; ATP:A 97.2 0.0001 3.5E-09 63.9 1.9 34 55-90 7-40 (222)
201 3a00_A Guanylate kinase, GMP k 97.2 0.00028 9.5E-09 59.9 4.4 24 55-78 3-26 (186)
202 1nn5_A Similar to deoxythymidy 97.2 8.4E-05 2.9E-09 63.1 1.1 27 55-81 11-37 (215)
203 1uf9_A TT1252 protein; P-loop, 97.1 0.00016 5.5E-09 60.8 2.4 33 55-90 10-42 (203)
204 3sfz_A APAF-1, apoptotic pepti 97.1 0.0016 5.6E-08 68.0 10.3 22 55-76 149-170 (1249)
205 2grj_A Dephospho-COA kinase; T 97.1 0.00019 6.5E-09 62.9 2.6 29 55-83 14-42 (192)
206 4e22_A Cytidylate kinase; P-lo 97.1 0.0002 6.8E-09 64.3 2.7 34 55-90 29-62 (252)
207 3kw6_A 26S protease regulatory 97.1 0.001 3.5E-08 50.0 6.0 54 202-259 2-56 (78)
208 2h92_A Cytidylate kinase; ross 97.1 0.00025 8.7E-09 60.8 3.0 29 55-83 5-33 (219)
209 2fz4_A DNA repair protein RAD2 97.1 0.0011 3.6E-08 59.1 7.1 37 55-91 110-147 (237)
210 2wwf_A Thymidilate kinase, put 97.0 8.7E-05 3E-09 63.0 -0.1 29 55-83 12-40 (212)
211 3tr0_A Guanylate kinase, GMP k 97.0 0.00029 1E-08 59.4 3.1 34 55-90 9-42 (205)
212 2ga8_A Hypothetical 39.9 kDa p 97.0 8.1E-05 2.8E-09 72.4 -0.4 29 55-83 26-54 (359)
213 1q3t_A Cytidylate kinase; nucl 97.0 0.00025 8.6E-09 62.4 2.6 34 55-90 18-51 (236)
214 3r20_A Cytidylate kinase; stru 97.0 0.00027 9.3E-09 64.3 2.8 34 55-90 11-44 (233)
215 3ney_A 55 kDa erythrocyte memb 97.0 0.00034 1.1E-08 62.3 3.2 24 55-78 21-44 (197)
216 2qt1_A Nicotinamide riboside k 97.0 0.00017 5.7E-09 61.8 1.0 34 55-90 23-57 (207)
217 2q6t_A DNAB replication FORK h 97.0 0.0015 5.2E-08 63.4 7.8 32 55-86 202-237 (444)
218 2bdt_A BH3686; alpha-beta prot 97.0 0.00036 1.2E-08 58.7 2.8 34 55-89 4-37 (189)
219 1vht_A Dephospho-COA kinase; s 96.9 0.00032 1.1E-08 60.5 2.5 28 55-83 6-33 (218)
220 3nwj_A ATSK2; P loop, shikimat 96.9 0.00032 1.1E-08 64.1 2.6 41 55-97 50-91 (250)
221 1vma_A Cell division protein F 96.9 0.0014 4.7E-08 61.7 6.8 66 55-126 106-195 (306)
222 4aby_A DNA repair protein RECN 96.9 0.0014 4.9E-08 61.8 7.0 24 55-78 62-85 (415)
223 3zvl_A Bifunctional polynucleo 96.9 0.00046 1.6E-08 66.8 3.6 33 55-89 260-292 (416)
224 3asz_A Uridine kinase; cytidin 96.9 0.00028 9.7E-09 60.2 1.8 29 55-83 8-38 (211)
225 2krk_A 26S protease regulatory 96.9 0.00059 2E-08 53.1 3.4 55 202-260 10-65 (86)
226 3a8t_A Adenylate isopentenyltr 96.9 0.0011 3.8E-08 63.9 5.9 33 55-87 42-74 (339)
227 2ewv_A Twitching motility prot 96.8 0.00055 1.9E-08 65.6 3.4 66 55-126 138-218 (372)
228 2j41_A Guanylate kinase; GMP, 96.8 0.00033 1.1E-08 59.0 1.5 23 55-77 8-30 (207)
229 3c8u_A Fructokinase; YP_612366 96.8 0.00028 9.6E-09 60.9 1.0 24 55-78 24-47 (208)
230 3hdt_A Putative kinase; struct 96.7 0.00058 2E-08 61.4 2.3 38 51-91 8-49 (223)
231 2f6r_A COA synthase, bifunctio 96.7 0.00059 2E-08 62.5 2.4 29 54-83 76-104 (281)
232 3bh0_A DNAB-like replicative h 96.7 0.0027 9.3E-08 59.0 6.8 31 55-85 70-103 (315)
233 3fdi_A Uncharacterized protein 96.7 0.0007 2.4E-08 59.3 2.5 36 55-93 8-43 (201)
234 2pt7_A CAG-ALFA; ATPase, prote 96.7 0.00093 3.2E-08 63.0 3.5 69 55-128 173-251 (330)
235 1rz3_A Hypothetical protein rb 96.6 0.001 3.5E-08 57.2 3.3 33 54-86 23-58 (201)
236 1g5t_A COB(I)alamin adenosyltr 96.6 0.0027 9.1E-08 56.9 6.1 73 55-128 30-131 (196)
237 1ltq_A Polynucleotide kinase; 96.6 0.0007 2.4E-08 61.0 2.1 28 55-82 4-32 (301)
238 1znw_A Guanylate kinase, GMP k 96.6 0.00072 2.5E-08 58.3 2.0 24 55-78 22-45 (207)
239 1q57_A DNA primase/helicase; d 96.6 0.0028 9.5E-08 62.2 6.3 32 55-86 244-279 (503)
240 2qor_A Guanylate kinase; phosp 96.6 0.00081 2.8E-08 57.7 2.2 24 55-78 14-37 (204)
241 1kgd_A CASK, peripheral plasma 96.5 0.00084 2.9E-08 56.8 2.0 24 55-78 7-30 (180)
242 2axn_A 6-phosphofructo-2-kinas 96.4 0.0025 8.6E-08 63.8 5.3 36 55-90 37-75 (520)
243 2jeo_A Uridine-cytidine kinase 96.4 0.00097 3.3E-08 59.1 2.0 26 55-80 27-52 (245)
244 3thx_B DNA mismatch repair pro 96.4 0.0051 1.7E-07 66.1 7.8 20 55-74 675-694 (918)
245 4a1f_A DNAB helicase, replicat 96.4 0.0017 5.8E-08 62.2 3.7 47 36-86 33-82 (338)
246 1tf7_A KAIC; homohexamer, hexa 96.4 0.0089 3E-07 59.2 8.9 34 55-88 41-78 (525)
247 3d3q_A TRNA delta(2)-isopenten 96.4 0.0012 4.1E-08 63.6 2.4 32 55-86 9-40 (340)
248 1sq5_A Pantothenate kinase; P- 96.4 0.001 3.4E-08 61.6 1.8 25 54-78 81-105 (308)
249 3ice_A Transcription terminati 96.3 0.0074 2.5E-07 60.0 7.7 73 55-128 176-272 (422)
250 2a5y_B CED-4; apoptosis; HET: 96.3 0.0076 2.6E-07 59.7 7.7 21 55-75 154-174 (549)
251 1x6v_B Bifunctional 3'-phospho 96.3 0.0042 1.4E-07 64.3 5.9 33 55-87 54-89 (630)
252 3bgw_A DNAB-like replicative h 96.3 0.01 3.5E-07 58.3 8.3 32 55-86 199-233 (444)
253 3aji_B S6C, proteasome (prosom 96.3 0.00052 1.8E-08 52.0 -0.7 53 204-260 2-55 (83)
254 1gtv_A TMK, thymidylate kinase 96.3 0.00065 2.2E-08 57.6 -0.2 25 55-79 2-26 (214)
255 3vlf_B 26S protease regulatory 96.2 0.0074 2.5E-07 46.7 5.8 53 204-260 2-55 (88)
256 1z6g_A Guanylate kinase; struc 96.2 0.0016 5.3E-08 57.2 2.0 23 55-77 25-47 (218)
257 1a7j_A Phosphoribulokinase; tr 96.2 0.0012 4E-08 61.2 1.2 36 55-90 7-45 (290)
258 3foz_A TRNA delta(2)-isopenten 96.2 0.0021 7.1E-08 61.6 2.9 36 55-90 12-47 (316)
259 4eaq_A DTMP kinase, thymidylat 96.2 0.0032 1.1E-07 56.0 3.8 29 55-83 28-58 (229)
260 1htw_A HI0065; nucleotide-bind 96.2 0.0018 6E-08 55.1 2.0 23 55-77 35-57 (158)
261 1ex7_A Guanylate kinase; subst 96.1 0.0052 1.8E-07 53.9 4.9 25 56-80 4-28 (186)
262 3b60_A Lipid A export ATP-bind 96.1 0.013 4.3E-07 59.0 8.4 24 55-78 371-394 (582)
263 3tqc_A Pantothenate kinase; bi 96.1 0.0018 6E-08 61.6 2.0 24 55-78 94-117 (321)
264 3llm_A ATP-dependent RNA helic 96.1 0.0034 1.2E-07 55.1 3.6 20 55-74 78-97 (235)
265 3j16_B RLI1P; ribosome recycli 96.1 0.0024 8.2E-08 65.5 2.9 23 55-77 105-127 (608)
266 2gza_A Type IV secretion syste 96.1 0.0045 1.6E-07 58.8 4.6 69 55-128 177-263 (361)
267 3lnc_A Guanylate kinase, GMP k 96.1 0.0012 4E-08 57.7 0.5 23 55-77 29-52 (231)
268 3dm5_A SRP54, signal recogniti 96.1 0.0099 3.4E-07 59.1 7.2 67 55-126 102-191 (443)
269 2oap_1 GSPE-2, type II secreti 96.0 0.0029 9.8E-08 63.5 3.2 68 55-127 262-343 (511)
270 2r8r_A Sensor protein; KDPD, P 96.0 0.0041 1.4E-07 57.0 4.0 32 55-86 8-42 (228)
271 4a82_A Cystic fibrosis transme 96.0 0.0073 2.5E-07 60.7 6.0 25 55-79 369-393 (578)
272 3exa_A TRNA delta(2)-isopenten 96.0 0.0026 9E-08 61.1 2.6 33 55-87 5-37 (322)
273 1wb9_A DNA mismatch repair pro 96.0 0.01 3.6E-07 62.7 7.4 22 55-76 609-630 (800)
274 1xx6_A Thymidine kinase; NESG, 96.0 0.016 5.5E-07 50.8 7.4 31 55-85 10-43 (191)
275 1lw7_A Transcriptional regulat 96.0 0.0023 8E-08 60.2 2.0 35 47-81 160-198 (365)
276 1w36_D RECD, exodeoxyribonucle 95.9 0.0043 1.5E-07 63.0 4.0 23 55-77 166-188 (608)
277 3thx_A DNA mismatch repair pro 95.9 0.016 5.4E-07 62.4 8.3 20 55-74 664-683 (934)
278 1j8m_F SRP54, signal recogniti 95.9 0.012 4.1E-07 54.8 6.6 33 54-86 99-134 (297)
279 4f4c_A Multidrug resistance pr 95.9 0.023 7.9E-07 62.8 9.7 25 55-79 446-470 (1321)
280 3qf4_B Uncharacterized ABC tra 95.9 0.013 4.3E-07 59.3 7.0 25 55-79 383-407 (598)
281 2iut_A DNA translocase FTSK; n 95.8 0.021 7.2E-07 58.6 8.6 33 55-87 216-255 (574)
282 1lvg_A Guanylate kinase, GMP k 95.8 0.0029 9.9E-08 54.6 1.9 24 55-78 6-29 (198)
283 3kl4_A SRP54, signal recogniti 95.8 0.01 3.6E-07 58.6 6.0 31 55-85 99-132 (433)
284 3aez_A Pantothenate kinase; tr 95.8 0.0029 9.9E-08 59.4 1.9 24 55-78 92-115 (312)
285 4f4c_A Multidrug resistance pr 95.8 0.0047 1.6E-07 68.2 3.7 24 55-78 1107-1130(1321)
286 2v9p_A Replication protein E1; 95.7 0.0028 9.7E-08 59.8 1.6 23 55-77 128-150 (305)
287 3kta_A Chromosome segregation 95.7 0.0034 1.1E-07 52.2 1.9 25 55-79 28-52 (182)
288 1ls1_A Signal recognition part 95.7 0.02 6.9E-07 53.0 7.3 24 54-77 99-122 (295)
289 1m8p_A Sulfate adenylyltransfe 95.7 0.0079 2.7E-07 61.1 5.0 36 55-90 398-437 (573)
290 3b85_A Phosphate starvation-in 95.7 0.0029 9.8E-08 56.0 1.3 22 55-76 24-45 (208)
291 2px0_A Flagellar biosynthesis 95.6 0.009 3.1E-07 55.5 4.5 31 55-85 107-141 (296)
292 1vt4_I APAF-1 related killer D 95.6 0.014 4.7E-07 64.5 6.5 32 55-86 152-191 (1221)
293 1p9r_A General secretion pathw 95.6 0.011 3.7E-07 58.0 5.1 25 55-79 169-193 (418)
294 2pcj_A ABC transporter, lipopr 95.6 0.0028 9.6E-08 56.3 0.9 24 55-78 32-55 (224)
295 1s96_A Guanylate kinase, GMP k 95.6 0.0041 1.4E-07 55.3 2.0 24 55-78 18-41 (219)
296 2onk_A Molybdate/tungstate ABC 95.6 0.0037 1.3E-07 56.5 1.6 30 46-78 20-49 (240)
297 2ius_A DNA translocase FTSK; n 95.6 0.028 9.6E-07 56.7 8.2 32 55-86 169-207 (512)
298 4i1u_A Dephospho-COA kinase; s 95.5 0.0059 2E-07 54.9 2.8 29 55-84 11-39 (210)
299 1odf_A YGR205W, hypothetical 3 95.5 0.0043 1.5E-07 57.6 1.9 25 55-79 33-57 (290)
300 1w4r_A Thymidine kinase; type 95.5 0.014 4.9E-07 52.2 5.2 32 55-86 22-56 (195)
301 2gks_A Bifunctional SAT/APS ki 95.5 0.0084 2.9E-07 60.5 4.1 34 55-88 374-410 (546)
302 3tif_A Uncharacterized ABC tra 95.5 0.0035 1.2E-07 56.2 1.1 25 55-79 33-57 (235)
303 1b0u_A Histidine permease; ABC 95.4 0.0036 1.2E-07 57.0 1.1 25 55-79 34-58 (262)
304 3fvq_A Fe(3+) IONS import ATP- 95.4 0.004 1.4E-07 60.2 1.4 24 55-78 32-55 (359)
305 1g6h_A High-affinity branched- 95.4 0.0038 1.3E-07 56.5 1.1 24 55-78 35-58 (257)
306 2qm8_A GTPase/ATPase; G protei 95.4 0.018 6.1E-07 54.3 5.7 23 55-77 57-79 (337)
307 3eph_A TRNA isopentenyltransfe 95.4 0.0061 2.1E-07 60.2 2.6 32 55-86 4-35 (409)
308 2o8b_B DNA mismatch repair pro 95.4 0.019 6.6E-07 62.2 6.6 21 54-74 790-810 (1022)
309 2cbz_A Multidrug resistance-as 95.4 0.004 1.4E-07 55.9 1.1 23 55-77 33-55 (237)
310 3v9p_A DTMP kinase, thymidylat 95.4 0.014 4.9E-07 52.6 4.7 31 55-85 27-64 (227)
311 1g29_1 MALK, maltose transport 95.4 0.0047 1.6E-07 59.6 1.7 24 55-78 31-54 (372)
312 2it1_A 362AA long hypothetical 95.4 0.0047 1.6E-07 59.6 1.6 24 55-78 31-54 (362)
313 2obl_A ESCN; ATPase, hydrolase 95.4 0.012 4.2E-07 56.1 4.4 28 55-82 73-100 (347)
314 3rlf_A Maltose/maltodextrin im 95.3 0.0048 1.6E-07 60.1 1.6 24 55-78 31-54 (381)
315 4b3f_X DNA-binding protein smu 95.3 0.006 2.1E-07 61.9 2.4 33 55-87 207-242 (646)
316 2yyz_A Sugar ABC transporter, 95.3 0.0049 1.7E-07 59.4 1.7 24 55-78 31-54 (359)
317 2d2e_A SUFC protein; ABC-ATPas 95.3 0.005 1.7E-07 55.5 1.7 22 55-76 31-52 (250)
318 1z47_A CYSA, putative ABC-tran 95.3 0.005 1.7E-07 59.3 1.7 24 55-78 43-66 (355)
319 1ji0_A ABC transporter; ATP bi 95.3 0.0044 1.5E-07 55.6 1.1 24 55-78 34-57 (240)
320 1v43_A Sugar-binding transport 95.3 0.0051 1.7E-07 59.5 1.6 24 55-78 39-62 (372)
321 3tmk_A Thymidylate kinase; pho 95.3 0.018 6.2E-07 51.5 5.1 29 56-84 8-36 (216)
322 2zu0_C Probable ATP-dependent 95.3 0.0054 1.8E-07 56.0 1.6 22 55-76 48-69 (267)
323 1qhl_A Protein (cell division 95.3 0.005 1.7E-07 55.6 1.4 26 54-79 28-53 (227)
324 2ocp_A DGK, deoxyguanosine kin 95.2 0.0077 2.6E-07 52.9 2.4 25 56-80 5-30 (241)
325 4g1u_C Hemin import ATP-bindin 95.2 0.0049 1.7E-07 56.5 1.1 24 55-78 39-62 (266)
326 3d31_A Sulfate/molybdate ABC t 95.2 0.0042 1.4E-07 59.5 0.7 24 55-78 28-51 (348)
327 3g5u_A MCG1178, multidrug resi 95.2 0.014 4.8E-07 64.3 4.8 25 55-79 418-442 (1284)
328 4edh_A DTMP kinase, thymidylat 95.2 0.019 6.5E-07 50.8 4.8 30 56-85 9-41 (213)
329 2qe7_A ATP synthase subunit al 95.1 0.03 1E-06 56.7 6.8 32 55-86 164-196 (502)
330 1sgw_A Putative ABC transporte 95.1 0.0053 1.8E-07 54.7 1.2 24 55-78 37-60 (214)
331 2olj_A Amino acid ABC transpor 95.1 0.0053 1.8E-07 56.3 1.1 24 55-78 52-75 (263)
332 3gfo_A Cobalt import ATP-bindi 95.1 0.0054 1.8E-07 56.7 1.1 24 55-78 36-59 (275)
333 2j37_W Signal recognition part 95.1 0.033 1.1E-06 56.0 6.9 32 55-86 103-137 (504)
334 3e70_C DPA, signal recognition 95.1 0.039 1.3E-06 52.2 7.0 23 55-77 131-153 (328)
335 2pze_A Cystic fibrosis transme 95.1 0.0056 1.9E-07 54.5 1.1 24 55-78 36-59 (229)
336 1p5z_B DCK, deoxycytidine kina 95.0 0.0034 1.2E-07 56.0 -0.4 28 55-82 26-54 (263)
337 1mv5_A LMRA, multidrug resista 95.0 0.0059 2E-07 54.8 1.1 24 55-78 30-53 (243)
338 2r9v_A ATP synthase subunit al 95.0 0.027 9.2E-07 57.2 6.0 68 55-128 177-278 (515)
339 1oxx_K GLCV, glucose, ABC tran 95.0 0.004 1.4E-07 59.7 0.0 24 55-78 33-56 (353)
340 1fx0_A ATP synthase alpha chai 95.0 0.028 9.7E-07 56.9 6.2 47 55-107 165-212 (507)
341 2ff7_A Alpha-hemolysin translo 95.0 0.006 2.1E-07 55.1 1.1 24 55-78 37-60 (247)
342 2yz2_A Putative ABC transporte 95.0 0.0061 2.1E-07 55.6 1.1 24 55-78 35-58 (266)
343 2ihy_A ABC transporter, ATP-bi 95.0 0.006 2E-07 56.3 1.1 24 55-78 49-72 (279)
344 1vpl_A ABC transporter, ATP-bi 95.0 0.0063 2.2E-07 55.5 1.1 24 55-78 43-66 (256)
345 2qi9_C Vitamin B12 import ATP- 95.0 0.0063 2.2E-07 55.3 1.1 24 55-78 28-51 (249)
346 2ixe_A Antigen peptide transpo 94.9 0.0067 2.3E-07 55.6 1.1 24 55-78 47-70 (271)
347 3upu_A ATP-dependent DNA helic 94.9 0.0094 3.2E-07 57.9 2.2 23 55-77 47-69 (459)
348 2qmh_A HPR kinase/phosphorylas 94.9 0.0066 2.2E-07 55.0 1.0 35 55-90 36-70 (205)
349 2c61_A A-type ATP synthase non 94.9 0.034 1.2E-06 55.8 6.2 47 55-107 154-205 (469)
350 2nq2_C Hypothetical ABC transp 94.9 0.0068 2.3E-07 55.0 1.1 24 55-78 33-56 (253)
351 2ghi_A Transport protein; mult 94.9 0.007 2.4E-07 55.1 1.1 23 55-77 48-70 (260)
352 3gd7_A Fusion complex of cysti 94.8 0.0076 2.6E-07 58.7 1.4 22 55-76 49-70 (390)
353 1g8f_A Sulfate adenylyltransfe 94.8 0.0098 3.4E-07 60.0 2.0 25 55-79 397-421 (511)
354 1rj9_A FTSY, signal recognitio 94.7 0.01 3.5E-07 55.5 1.9 37 54-90 103-141 (304)
355 3szr_A Interferon-induced GTP- 94.7 0.051 1.7E-06 55.3 7.1 22 56-77 48-69 (608)
356 3g5u_A MCG1178, multidrug resi 94.7 0.083 2.8E-06 58.3 9.2 24 55-78 1061-1084(1284)
357 3p32_A Probable GTPase RV1496/ 94.7 0.061 2.1E-06 50.6 7.1 23 55-77 81-103 (355)
358 1ewq_A DNA mismatch repair pro 94.6 0.041 1.4E-06 58.0 6.4 73 54-130 577-668 (765)
359 2dpy_A FLII, flagellum-specifi 94.6 0.016 5.6E-07 56.9 3.1 28 55-82 159-186 (438)
360 2pjz_A Hypothetical protein ST 94.6 0.0089 3E-07 54.8 1.1 24 54-77 31-54 (263)
361 3oaa_A ATP synthase subunit al 94.6 0.044 1.5E-06 55.7 6.2 68 55-128 164-265 (513)
362 3b9q_A Chloroplast SRP recepto 94.5 0.012 4.2E-07 54.9 1.9 36 55-90 102-139 (302)
363 2c9o_A RUVB-like 1; hexameric 94.5 0.13 4.3E-06 50.0 9.0 84 118-230 296-395 (456)
364 2f9l_A RAB11B, member RAS onco 94.5 0.015 5.1E-07 48.8 2.2 23 55-77 7-29 (199)
365 1dek_A Deoxynucleoside monopho 94.5 0.0074 2.5E-07 55.1 0.3 27 55-81 3-29 (241)
366 3tui_C Methionine import ATP-b 94.5 0.011 3.9E-07 57.2 1.6 24 55-78 56-79 (366)
367 2xau_A PRE-mRNA-splicing facto 94.4 0.033 1.1E-06 58.3 5.1 23 55-77 111-133 (773)
368 3vkw_A Replicase large subunit 94.4 0.03 1E-06 55.8 4.5 21 55-75 163-183 (446)
369 1bif_A 6-phosphofructo-2-kinas 94.4 0.044 1.5E-06 53.4 5.6 27 55-81 41-67 (469)
370 3ld9_A DTMP kinase, thymidylat 94.4 0.016 5.5E-07 52.2 2.2 29 55-83 23-55 (223)
371 4hlc_A DTMP kinase, thymidylat 94.4 0.049 1.7E-06 47.9 5.3 28 58-85 7-36 (205)
372 3cr8_A Sulfate adenylyltranfer 94.4 0.024 8.3E-07 57.5 3.8 35 55-89 371-409 (552)
373 1oix_A RAS-related protein RAB 94.3 0.015 5.1E-07 48.9 1.9 23 55-77 31-53 (191)
374 2bbs_A Cystic fibrosis transme 94.3 0.009 3.1E-07 55.6 0.6 24 55-78 66-89 (290)
375 3sop_A Neuronal-specific septi 94.3 0.014 4.9E-07 53.4 1.9 23 55-77 4-26 (270)
376 2f1r_A Molybdopterin-guanine d 94.3 0.0071 2.4E-07 52.0 -0.2 37 54-90 3-44 (171)
377 2gk6_A Regulator of nonsense t 94.3 0.014 4.8E-07 59.2 1.9 23 55-77 197-219 (624)
378 2ck3_A ATP synthase subunit al 94.2 0.055 1.9E-06 54.9 6.1 24 55-78 164-188 (510)
379 3k53_A Ferrous iron transport 94.2 0.087 3E-06 47.1 6.8 21 56-76 6-26 (271)
380 3e1s_A Exodeoxyribonuclease V, 94.2 0.017 5.6E-07 58.6 2.2 31 55-85 206-239 (574)
381 3l0o_A Transcription terminati 94.2 0.11 3.9E-06 51.6 8.0 73 55-128 177-273 (427)
382 2npi_A Protein CLP1; CLP1-PCF1 94.1 0.015 5.2E-07 57.5 1.7 23 55-77 140-162 (460)
383 1np6_A Molybdopterin-guanine d 94.0 0.019 6.5E-07 49.6 1.9 24 54-77 7-30 (174)
384 3lxw_A GTPase IMAP family memb 94.0 0.072 2.5E-06 47.4 5.7 23 55-77 23-45 (247)
385 1tf7_A KAIC; homohexamer, hexa 93.9 0.017 5.9E-07 57.2 1.7 23 55-77 283-305 (525)
386 1c9k_A COBU, adenosylcobinamid 93.8 0.024 8.1E-07 49.9 2.2 34 56-90 2-35 (180)
387 2xxa_A Signal recognition part 93.8 0.12 4.2E-06 50.7 7.4 32 55-86 102-137 (433)
388 3euj_A Chromosome partition pr 93.8 0.019 6.3E-07 57.7 1.6 31 46-79 25-55 (483)
389 2vp4_A Deoxynucleoside kinase; 93.7 0.018 6.3E-07 50.4 1.3 22 55-76 22-43 (230)
390 1xjc_A MOBB protein homolog; s 93.7 0.024 8.1E-07 49.2 1.9 31 55-85 6-39 (169)
391 1f2t_A RAD50 ABC-ATPase; DNA d 93.7 0.027 9.3E-07 46.8 2.2 23 55-77 25-47 (149)
392 2og2_A Putative signal recogni 93.6 0.023 7.8E-07 54.7 1.9 36 55-90 159-196 (359)
393 3t34_A Dynamin-related protein 93.6 0.25 8.5E-06 46.1 8.9 22 55-76 36-57 (360)
394 3ux8_A Excinuclease ABC, A sub 93.6 0.16 5.4E-06 51.8 8.1 101 55-182 46-263 (670)
395 3nh6_A ATP-binding cassette SU 93.4 0.014 4.7E-07 55.0 -0.2 25 55-79 82-106 (306)
396 4dcu_A GTP-binding protein ENG 93.3 0.23 7.7E-06 48.2 8.2 22 55-76 25-46 (456)
397 2dyk_A GTP-binding protein; GT 93.3 0.035 1.2E-06 43.8 2.1 22 56-77 4-25 (161)
398 1kao_A RAP2A; GTP-binding prot 93.2 0.037 1.3E-06 43.5 2.1 22 56-77 6-27 (167)
399 2wji_A Ferrous iron transport 93.2 0.034 1.2E-06 45.2 2.0 21 56-76 6-26 (165)
400 2zej_A Dardarin, leucine-rich 93.2 0.028 9.5E-07 46.5 1.4 20 56-75 5-24 (184)
401 1z2a_A RAS-related protein RAB 93.2 0.038 1.3E-06 43.8 2.1 21 56-76 8-28 (168)
402 2ce2_X GTPase HRAS; signaling 93.1 0.035 1.2E-06 43.5 1.9 22 56-77 6-27 (166)
403 1yqt_A RNAse L inhibitor; ATP- 93.1 0.028 9.4E-07 56.5 1.6 24 55-78 314-337 (538)
404 2yhs_A FTSY, cell division pro 93.1 0.03 1E-06 56.6 1.9 36 55-90 295-332 (503)
405 1nrj_B SR-beta, signal recogni 93.1 0.037 1.3E-06 46.7 2.1 23 55-77 14-36 (218)
406 3ozx_A RNAse L inhibitor; ATP 93.0 0.025 8.5E-07 57.0 1.1 24 55-78 296-319 (538)
407 3def_A T7I23.11 protein; chlor 93.0 0.13 4.6E-06 45.7 5.8 23 55-77 38-60 (262)
408 3lv8_A DTMP kinase, thymidylat 93.0 0.032 1.1E-06 50.6 1.7 24 55-78 29-52 (236)
409 1pui_A ENGB, probable GTP-bind 93.0 0.013 4.3E-07 49.2 -0.9 23 55-77 28-50 (210)
410 1u8z_A RAS-related protein RAL 93.0 0.042 1.4E-06 43.3 2.1 22 56-77 7-28 (168)
411 1ek0_A Protein (GTP-binding pr 92.9 0.043 1.5E-06 43.4 2.1 22 56-77 6-27 (170)
412 1m2o_B GTP-binding protein SAR 92.9 0.24 8.3E-06 41.2 6.9 21 55-75 25-45 (190)
413 2ged_A SR-beta, signal recogni 92.9 0.042 1.4E-06 45.2 2.1 23 55-77 50-72 (193)
414 1yqt_A RNAse L inhibitor; ATP- 92.9 0.032 1.1E-06 56.0 1.6 23 55-77 49-71 (538)
415 2wjg_A FEOB, ferrous iron tran 92.9 0.035 1.2E-06 45.3 1.6 22 55-76 9-30 (188)
416 2dzn_B 26S protease regulatory 92.8 0.025 8.6E-07 42.8 0.7 51 206-260 1-52 (82)
417 2wjy_A Regulator of nonsense t 92.8 0.034 1.2E-06 58.6 1.9 23 55-77 373-395 (800)
418 1ky3_A GTP-binding protein YPT 92.8 0.044 1.5E-06 44.0 2.1 23 55-77 10-32 (182)
419 1u0l_A Probable GTPase ENGC; p 92.8 0.027 9.1E-07 51.9 1.0 24 55-78 171-194 (301)
420 1z0j_A RAB-22, RAS-related pro 92.8 0.045 1.5E-06 43.5 2.1 22 56-77 9-30 (170)
421 2yv5_A YJEQ protein; hydrolase 92.8 0.035 1.2E-06 51.3 1.7 23 55-78 167-189 (302)
422 2nzj_A GTP-binding protein REM 92.8 0.042 1.5E-06 43.9 1.9 21 56-76 7-27 (175)
423 1t6n_A Probable ATP-dependent 92.8 0.31 1.1E-05 41.3 7.5 47 55-111 53-105 (220)
424 1wms_A RAB-9, RAB9, RAS-relate 92.8 0.045 1.5E-06 44.0 2.1 21 56-76 10-30 (177)
425 3a1s_A Iron(II) transport prot 92.7 0.15 5.1E-06 45.9 5.7 20 56-75 8-27 (258)
426 1z08_A RAS-related protein RAB 92.7 0.047 1.6E-06 43.4 2.1 21 56-76 9-29 (170)
427 2xtp_A GTPase IMAP family memb 92.7 0.23 7.7E-06 43.6 6.7 23 55-77 24-46 (260)
428 1g16_A RAS-related protein SEC 92.6 0.045 1.5E-06 43.4 1.9 21 56-76 6-26 (170)
429 1r2q_A RAS-related protein RAB 92.6 0.049 1.7E-06 43.1 2.1 21 56-76 9-29 (170)
430 3b1v_A Ferrous iron uptake tra 92.6 0.14 4.7E-06 46.8 5.4 21 56-76 6-26 (272)
431 1r8s_A ADP-ribosylation factor 92.6 0.054 1.8E-06 43.0 2.3 22 56-77 3-24 (164)
432 3bc1_A RAS-related protein RAB 92.6 0.05 1.7E-06 44.0 2.1 22 55-76 13-34 (195)
433 1c1y_A RAS-related protein RAP 92.5 0.052 1.8E-06 42.9 2.1 21 56-76 6-26 (167)
434 2j9r_A Thymidine kinase; TK1, 92.5 0.29 9.9E-06 44.2 7.3 31 55-85 30-63 (214)
435 2erx_A GTP-binding protein DI- 92.5 0.042 1.4E-06 43.5 1.6 21 56-76 6-26 (172)
436 2hxs_A RAB-26, RAS-related pro 92.5 0.045 1.5E-06 44.1 1.7 21 56-76 9-29 (178)
437 3hjn_A DTMP kinase, thymidylat 92.4 0.098 3.4E-06 45.5 4.0 30 58-87 5-37 (197)
438 3clv_A RAB5 protein, putative; 92.4 0.053 1.8E-06 43.9 2.1 22 55-76 9-30 (208)
439 3qks_A DNA double-strand break 92.4 0.052 1.8E-06 47.2 2.2 25 55-79 25-49 (203)
440 4tmk_A Protein (thymidylate ki 92.3 0.054 1.8E-06 48.1 2.2 22 56-77 6-27 (213)
441 2z0m_A 337AA long hypothetical 92.3 0.3 1E-05 43.1 7.1 33 55-87 33-65 (337)
442 2y8e_A RAB-protein 6, GH09086P 92.2 0.054 1.8E-06 43.4 1.9 22 55-76 16-37 (179)
443 3q85_A GTP-binding protein REM 92.2 0.056 1.9E-06 43.1 2.0 20 56-75 5-24 (169)
444 3iby_A Ferrous iron transport 92.2 0.17 5.7E-06 45.6 5.3 21 56-76 4-24 (256)
445 2rcn_A Probable GTPase ENGC; Y 92.1 0.046 1.6E-06 52.7 1.6 24 55-78 217-240 (358)
446 2ffh_A Protein (FFH); SRP54, s 92.1 0.27 9.1E-06 48.4 7.1 31 55-85 100-133 (425)
447 2a9k_A RAS-related protein RAL 92.1 0.062 2.1E-06 43.3 2.1 23 55-77 20-42 (187)
448 1z0f_A RAB14, member RAS oncog 92.1 0.063 2.2E-06 42.9 2.1 23 55-77 17-39 (179)
449 1upt_A ARL1, ADP-ribosylation 92.1 0.064 2.2E-06 42.7 2.1 21 56-76 10-30 (171)
450 3qkt_A DNA double-strand break 92.0 0.058 2E-06 50.3 2.2 29 189-219 136-164 (339)
451 3q72_A GTP-binding protein RAD 92.0 0.053 1.8E-06 43.1 1.6 20 56-75 5-24 (166)
452 3ozx_A RNAse L inhibitor; ATP 92.0 0.041 1.4E-06 55.4 1.1 23 55-77 27-49 (538)
453 3bk7_A ABC transporter ATP-bin 92.0 0.048 1.6E-06 55.8 1.6 24 55-78 384-407 (607)
454 3tw8_B RAS-related protein RAB 91.9 0.058 2E-06 43.2 1.8 21 55-75 11-31 (181)
455 2efe_B Small GTP-binding prote 91.9 0.067 2.3E-06 43.1 2.1 22 55-76 14-35 (181)
456 1zu4_A FTSY; GTPase, signal re 91.9 0.057 1.9E-06 50.8 1.9 30 55-84 107-139 (320)
457 2xzl_A ATP-dependent helicase 91.9 0.059 2E-06 56.8 2.2 32 55-86 377-412 (802)
458 3t1o_A Gliding protein MGLA; G 91.8 0.064 2.2E-06 43.6 2.0 24 55-78 16-39 (198)
459 3b6e_A Interferon-induced heli 91.8 0.069 2.3E-06 44.6 2.2 23 55-77 50-72 (216)
460 2oil_A CATX-8, RAS-related pro 91.8 0.07 2.4E-06 44.0 2.2 23 55-77 27-49 (193)
461 1m7b_A RND3/RHOE small GTP-bin 91.8 0.064 2.2E-06 44.1 1.9 21 56-76 10-30 (184)
462 1tq4_A IIGP1, interferon-induc 91.7 0.044 1.5E-06 53.7 1.1 21 55-75 71-91 (413)
463 2gj8_A MNME, tRNA modification 91.7 0.061 2.1E-06 44.3 1.7 22 56-77 7-28 (172)
464 2fn4_A P23, RAS-related protei 91.7 0.066 2.3E-06 42.9 1.9 22 55-76 11-32 (181)
465 2qag_B Septin-6, protein NEDD5 91.7 0.042 1.4E-06 54.3 0.8 21 56-76 45-65 (427)
466 1mh1_A RAC1; GTP-binding, GTPa 91.7 0.073 2.5E-06 43.0 2.1 21 56-76 8-28 (186)
467 2wsm_A Hydrogenase expression/ 91.7 0.07 2.4E-06 45.2 2.1 25 55-79 32-56 (221)
468 3b5x_A Lipid A export ATP-bind 91.7 0.051 1.7E-06 54.5 1.4 24 55-78 371-394 (582)
469 3con_A GTPase NRAS; structural 91.6 0.074 2.5E-06 43.6 2.1 23 55-77 23-45 (190)
470 2hjg_A GTP-binding protein ENG 91.6 0.49 1.7E-05 45.5 8.2 21 56-76 6-26 (436)
471 4dsu_A GTPase KRAS, isoform 2B 91.6 0.075 2.5E-06 43.0 2.1 22 56-77 7-28 (189)
472 4gl2_A Interferon-induced heli 91.6 0.059 2E-06 53.9 1.8 39 55-93 24-72 (699)
473 2bme_A RAB4A, RAS-related prot 91.6 0.07 2.4E-06 43.3 1.9 23 55-77 12-34 (186)
474 2lkc_A Translation initiation 91.6 0.072 2.5E-06 42.8 2.0 21 55-75 10-30 (178)
475 3bwd_D RAC-like GTP-binding pr 91.6 0.077 2.6E-06 42.8 2.1 22 55-76 10-31 (182)
476 3j16_B RLI1P; ribosome recycli 91.5 0.057 2E-06 55.3 1.6 23 55-77 380-402 (608)
477 3ch4_B Pmkase, phosphomevalona 91.5 0.04 1.4E-06 49.4 0.4 36 55-90 13-49 (202)
478 2www_A Methylmalonic aciduria 91.5 0.065 2.2E-06 50.6 1.9 23 55-77 76-98 (349)
479 2p67_A LAO/AO transport system 91.5 0.061 2.1E-06 50.4 1.7 23 55-77 58-80 (341)
480 2o5v_A DNA replication and rep 91.5 0.061 2.1E-06 51.6 1.6 38 35-77 13-50 (359)
481 3tkl_A RAS-related protein RAB 91.4 0.081 2.8E-06 43.3 2.1 23 55-77 18-40 (196)
482 2g6b_A RAS-related protein RAB 91.4 0.082 2.8E-06 42.5 2.1 23 55-77 12-34 (180)
483 3pqc_A Probable GTP-binding pr 91.4 0.06 2E-06 43.8 1.3 23 55-77 25-47 (195)
484 2gf9_A RAS-related protein RAB 91.4 0.082 2.8E-06 43.5 2.1 23 55-77 24-46 (189)
485 2fwr_A DNA repair protein RAD2 91.4 0.086 2.9E-06 50.2 2.6 37 55-91 110-147 (472)
486 3gqb_B V-type ATP synthase bet 91.3 0.23 7.7E-06 49.9 5.7 48 55-108 149-208 (464)
487 3kkq_A RAS-related protein M-R 91.3 0.085 2.9E-06 42.8 2.1 22 55-76 20-41 (183)
488 3vr4_A V-type sodium ATPase ca 91.3 0.16 5.5E-06 52.5 4.6 29 55-83 234-262 (600)
489 3i8s_A Ferrous iron transport 91.2 0.33 1.1E-05 43.8 6.1 21 56-76 6-26 (274)
490 3vr4_D V-type sodium ATPase su 91.2 0.27 9.3E-06 49.4 6.0 48 55-108 153-205 (465)
491 1svi_A GTP-binding protein YSX 91.2 0.065 2.2E-06 44.0 1.3 22 55-76 25-46 (195)
492 1yrb_A ATP(GTP)binding protein 91.1 0.12 4.2E-06 44.9 3.1 31 55-85 16-48 (262)
493 2atv_A RERG, RAS-like estrogen 91.1 0.09 3.1E-06 43.6 2.1 22 55-76 30-51 (196)
494 3dz8_A RAS-related protein RAB 91.1 0.089 3E-06 43.5 2.1 23 55-77 25-47 (191)
495 2cxx_A Probable GTP-binding pr 91.1 0.077 2.6E-06 43.1 1.6 21 56-76 4-24 (190)
496 1x3s_A RAS-related protein RAB 91.0 0.093 3.2E-06 42.8 2.1 23 55-77 17-39 (195)
497 3mfy_A V-type ATP synthase alp 91.0 0.12 4.1E-06 53.3 3.4 29 55-83 229-257 (588)
498 1w1w_A Structural maintenance 91.0 0.09 3.1E-06 50.4 2.3 26 55-80 28-53 (430)
499 1nij_A Hypothetical protein YJ 91.0 0.17 6E-06 46.8 4.2 23 55-77 6-28 (318)
500 2fg5_A RAB-22B, RAS-related pr 90.9 0.089 3E-06 43.6 1.9 23 55-77 25-47 (192)
No 1
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=100.00 E-value=1.8e-63 Score=461.28 Aligned_cols=272 Identities=52% Similarity=0.961 Sum_probs=232.0
Q ss_pred hhhhccCccccchhhhh--------------------HhccccCCCCcHHHHHHHHHHHcCCceEEeeccccccccCCCc
Q 020787 38 SFEYLQGDYYIAPVFMA--------------------SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEP 97 (321)
Q Consensus 38 ~~~~~~~~~~~~p~f~~--------------------iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~~~GEs 97 (321)
+|+|+.++||+||+|++ +++||||||||||++|+++|+++|.+|+.++++++.++|+|++
T Consensus 1 ~~~~~~~~~y~~~~~~~~~~~~~~k~~l~~~~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~ 80 (293)
T 3t15_A 1 NLDNKLDGFYIAPAFMDKLVVHITKNFLKLPNIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEP 80 (293)
T ss_dssp CCCCEETTEECCHHHHHHHHHHHHHTTSCCTTCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HH
T ss_pred CcccccCcccCCHHHHHHHHHHHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchh
Confidence 58999999999999998 6889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhcCCceEEEeecccccCCCCC-CCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccE
Q 020787 98 GKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPI 176 (321)
Q Consensus 98 er~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~~r~~-~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~V 176 (321)
++.++++|+.|.+.++ +.+||||||||||+++++++ .++.+.+++.++.+|++++|+++.+++++.+...+ ..+|+|
T Consensus 81 ~~~i~~~f~~a~~~~~-~~~~~vl~iDEiD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~-~~~v~v 158 (293)
T 3t15_A 81 AKLIRQRYREAAEIIR-KGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQE-NARVPI 158 (293)
T ss_dssp HHHHHHHHHHHHHHHT-TSSCCCEEEECCC--------------CHHHHHHHHHHHHHCCC-----------C-CCCCCE
T ss_pred HHHHHHHHHHHHHHHh-cCCCeEEEEechhhhcCCCCCCccccchHHHHHHHHHHHhcccccccccccccccc-CCCcEE
Confidence 9999999999976655 67899999999999998776 55556677899999999999999888888655444 678999
Q ss_pred EEeeCCCCCccccCCCCCCCcceecCCCHHHHHHHHHHHhhcCCCCHHHHHHhhhCCCCCcchhhHHHHHhHhHHHHHHH
Q 020787 177 IFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKW 256 (321)
Q Consensus 177 IaaTNrp~~LDpALlRpGRfDr~i~~Pd~~~R~~Il~~~~~~~~l~~~dl~~L~d~f~gq~idf~gAlra~~~d~~~~~~ 256 (321)
|+|||+++.|||||+||||||+.+++|+.++|.+|++.++....++.+++.+++++|+|++|+|++|+|+++|++.+++|
T Consensus 159 I~ttN~~~~ld~al~R~~R~d~~i~~P~~~~r~~Il~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~l~~~~~~~~i~~~ 238 (293)
T 3t15_A 159 IVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCTGIFRTDNVPAEDVVKIVDNFPGQSIDFFGALRARVYDDEVRKW 238 (293)
T ss_dssp EEECSSCCC--CHHHHHHHEEEEEECCCHHHHHHHHHHHHGGGCCCHHHHHHHHHHSCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEecCCcccCCHHHhCCCCCceeEeCcCHHHHHHHHHHhccCCCCCHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccCcccccchhhcccCCCCCCcccCCcCCHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 020787 257 IDDIGGVENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKE 314 (321)
Q Consensus 257 i~~~~g~~~~~~~lv~~~~~~~~~~~~~~~~s~~~l~~~g~~l~~eq~~v~~~~l~~~ 314 (321)
+.+. |++++.+++++++.. +|.|.+|++|+++|+++|+.|++||++|++++|+++
T Consensus 239 ~~~~-g~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~g~~~~~eq~~~~~~~l~~~ 293 (293)
T 3t15_A 239 VSGT-GIEKIGDKLLNSFDG--PPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADK 293 (293)
T ss_dssp HHHT-CSTTCHHHHTSCSSC--SCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHh-CHHHHHHHHHcCCCC--CCCCCCccccHHHHHHHHHHHHHHHHHHHHhhcccC
Confidence 9999 999999999999866 599999999999999999999999999999999974
No 2
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.8e-45 Score=359.44 Aligned_cols=184 Identities=18% Similarity=0.230 Sum_probs=155.0
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeeccccccccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeecccccCCCCC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG 134 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~~r~~ 134 (321)
.++||||||||||++|+|+|++++++|+.++++++.++|+||+|++||++|..|++. +||||||||||+++++++
T Consensus 184 GvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk~vGese~~vr~lF~~Ar~~-----aP~IIFiDEiDai~~~R~ 258 (405)
T 4b4t_J 184 GVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRELFVMAREH-----APSIIFMDEIDSIGSTRV 258 (405)
T ss_dssp CEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCSSTTHHHHHHHHHHHHHHHT-----CSEEEEEESSSCCTTSCS
T ss_pred ceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhccccchHHHHHHHHHHHHHHh-----CCceEeeecchhhccCCC
Confidence 789999999999999999999999999999999999999999999999999999976 899999999999998765
Q ss_pred --CCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccccCCCCCCCcceecC--CCHHHHHH
Q 020787 135 --NTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQ--PNLEDILN 210 (321)
Q Consensus 135 --~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpALlRpGRfDr~i~~--Pd~~~R~~ 210 (321)
+++.....+++..+||+.||+. +...+|.||+|||||+.|||||+||||||+.|++ ||.++|.+
T Consensus 259 ~~~~~~~~~~~~~l~~lL~~lDg~------------~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~ 326 (405)
T 4b4t_J 259 EGSGGGDSEVQRTMLELLNQLDGF------------ETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAE 326 (405)
T ss_dssp CSSSGGGGHHHHHHHHHHHHHHTT------------TCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHH
T ss_pred CCCCCCcHHHHHHHHHHHHhhhcc------------CCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHH
Confidence 2222233455667888888852 1246899999999999999999999999998875 99999999
Q ss_pred HHHHHhhcCCCCH-HHHHHhhhCCCCCcchhhHHHHHhHhHHHHHHHHHh
Q 020787 211 IVHRMYEKDGITK-DEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDD 259 (321)
Q Consensus 211 Il~~~~~~~~l~~-~dl~~L~d~f~gq~idf~gAlra~~~d~~~~~~i~~ 259 (321)
||+.++++.+++. .|+..|+..++| |.||..+.+|.++...++.+
T Consensus 327 Il~~~~~~~~l~~dvdl~~lA~~t~G----~SGADi~~l~~eA~~~Air~ 372 (405)
T 4b4t_J 327 ILRIHSRKMNLTRGINLRKVAEKMNG----CSGADVKGVCTEAGMYALRE 372 (405)
T ss_dssp HHHHHHTTSBCCSSCCHHHHHHHCCS----CCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCCCCCccCCHHHHHHHCCC----CCHHHHHHHHHHHHHHHHHc
Confidence 9999999887653 466666655443 77788888888886666543
No 3
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-43 Score=350.92 Aligned_cols=184 Identities=20% Similarity=0.244 Sum_probs=151.8
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeeccccccccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeecccccCCCCC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG 134 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~~r~~ 134 (321)
.++||||||||||++|+|+|++++++|+.+++++|+++|+||+|+++|++|..|++. +||||||||||+++++|+
T Consensus 218 GvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~sk~vGesek~ir~lF~~Ar~~-----aP~IIfiDEiDai~~~R~ 292 (437)
T 4b4t_I 218 GVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRLCRQIFKVAGEN-----APSIVFIDEIDAIGTKRY 292 (437)
T ss_dssp EEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCCSSSSHHHHHHHHHHHHHHHT-----CSEEEEEEEESSSSCCCS
T ss_pred CCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhhccCchHHHHHHHHHHHHHhc-----CCcEEEEehhhhhcccCC
Confidence 789999999999999999999999999999999999999999999999999999976 899999999999998775
Q ss_pred C--CccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccccCCCCCCCcceecC--CCHHHHHH
Q 020787 135 N--TQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQ--PNLEDILN 210 (321)
Q Consensus 135 ~--t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpALlRpGRfDr~i~~--Pd~~~R~~ 210 (321)
. ++.....+.+..+||+.||+. +...+|.||+|||+|+.|||||+||||||+.|++ ||.++|.+
T Consensus 293 ~~~~~~~~~~~~~l~~LL~~lDg~------------~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~ 360 (437)
T 4b4t_I 293 DSNSGGEREIQRTMLELLNQLDGF------------DDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKK 360 (437)
T ss_dssp CSSCSSCCHHHHHHHHHHHHHHHC------------CCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHH
T ss_pred CCCCCccHHHHHHHHHHHHHhhCc------------CCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHH
Confidence 2 222222345556777777731 1246899999999999999999999999998875 99999999
Q ss_pred HHHHHhhcCCCCH-HHHHHhhhCCCCCcchhhHHHHHhHhHHHHHHHHHh
Q 020787 211 IVHRMYEKDGITK-DEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDD 259 (321)
Q Consensus 211 Il~~~~~~~~l~~-~dl~~L~d~f~gq~idf~gAlra~~~d~~~~~~i~~ 259 (321)
||+.++++.+++. .|+..|+.... +|+||..+.+|.++...++.+
T Consensus 361 Il~~~l~~~~l~~dvdl~~LA~~T~----GfSGADI~~l~~eA~~~Air~ 406 (437)
T 4b4t_I 361 ILGIHTSKMNLSEDVNLETLVTTKD----DLSGADIQAMCTEAGLLALRE 406 (437)
T ss_dssp HHHHHHTTSCBCSCCCHHHHHHHCC----SCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCCCCCCcCCHHHHHHhCC----CCCHHHHHHHHHHHHHHHHHc
Confidence 9999999876643 35555554333 366787788888886666543
No 4
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.5e-43 Score=347.87 Aligned_cols=184 Identities=22% Similarity=0.242 Sum_probs=152.3
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeeccccccccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeecccccCCCCC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG 134 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~~r~~ 134 (321)
.++||||||||||++|+|+|+++|++|+.+++++++++|+||+++++|.+|..|++. +||||||||||+++++|.
T Consensus 217 GvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~sk~~Gese~~ir~~F~~A~~~-----~P~IifiDEiDai~~~R~ 291 (437)
T 4b4t_L 217 GVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYAKEH-----EPCIIFMDEVDAIGGRRF 291 (437)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCCSSSSHHHHHHHHHHHHHHHS-----CSEEEEEECCCSSSCCCS
T ss_pred eEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhccccchHHHHHHHHHHHHHHhc-----CCceeeeecccccccccc
Confidence 789999999999999999999999999999999999999999999999999999966 899999999999998775
Q ss_pred C--CccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccccCCCCCCCcceecC--CCHHHHHH
Q 020787 135 N--TQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQ--PNLEDILN 210 (321)
Q Consensus 135 ~--t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpALlRpGRfDr~i~~--Pd~~~R~~ 210 (321)
+ ++.+...+.+..+||+.||+. . ...+|.||+|||+|+.|||||+||||||+.|++ ||.++|.+
T Consensus 292 ~~~~~~~~~~~~~l~~lL~~lDg~---------~---~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~ 359 (437)
T 4b4t_L 292 SEGTSADREIQRTLMELLTQMDGF---------D---NLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLE 359 (437)
T ss_dssp SSCCSSTTHHHHHHHHHHHHHHSS---------S---CTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHH
T ss_pred cCCCCcchHHHHHHHHHHHHhhcc---------c---CCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHH
Confidence 2 222222345556788888842 1 245899999999999999999999999999885 99999999
Q ss_pred HHHHHhhcCCCC-HHHHHHhhhCCCCCcchhhHHHHHhHhHHHHHHHHHh
Q 020787 211 IVHRMYEKDGIT-KDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDD 259 (321)
Q Consensus 211 Il~~~~~~~~l~-~~dl~~L~d~f~gq~idf~gAlra~~~d~~~~~~i~~ 259 (321)
||+.++++..++ ..|+..|+..++ +|+||..+.+|.++....+.+
T Consensus 360 Il~~~~~~~~~~~d~dl~~lA~~t~----G~sGADi~~l~~eA~~~air~ 405 (437)
T 4b4t_L 360 IFKIHTAKVKKTGEFDFEAAVKMSD----GFNGADIRNCATEAGFFAIRD 405 (437)
T ss_dssp HHHHHHHTSCBCSCCCHHHHHHTCC----SCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCCCCCcccCHHHHHHhCC----CCCHHHHHHHHHHHHHHHHHc
Confidence 999999887653 345566655433 367787888888876665543
No 5
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-43 Score=350.02 Aligned_cols=184 Identities=17% Similarity=0.196 Sum_probs=148.3
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeeccccccccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeecccccCCCCC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG 134 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~~r~~ 134 (321)
.++||||||||||++|+|+|++++++|+.+++++|.++|+||+++++|++|..|++. +||||||||||+++++|.
T Consensus 217 GvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~~~vGese~~ir~lF~~A~~~-----aP~IifiDEiDal~~~R~ 291 (434)
T 4b4t_M 217 GALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYIGEGAKLVRDAFALAKEK-----APTIIFIDELDAIGTKRF 291 (434)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCSSCSSHHHHHHHHHHHHHHHH-----CSEEEEEECTHHHHCCCS
T ss_pred eeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhhcccchHHHHHHHHHHHHHhc-----CCeEEeecchhhhhhccC
Confidence 789999999999999999999999999999999999999999999999999999977 899999999999887665
Q ss_pred CC--ccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccccCCCCCCCcceecC--CCHHHHHH
Q 020787 135 NT--QMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQ--PNLEDILN 210 (321)
Q Consensus 135 ~t--~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpALlRpGRfDr~i~~--Pd~~~R~~ 210 (321)
.. +.....+.+..+||+.||+. .+ ..+|.||+|||||+.|||||+||||||+.|++ ||.++|.+
T Consensus 292 ~~~~~~~~~~~~~~~~lL~~ldg~---------~~---~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~ 359 (434)
T 4b4t_M 292 DSEKSGDREVQRTMLELLNQLDGF---------SS---DDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQ 359 (434)
T ss_dssp SGGGGTTHHHHHHHHHHHHHHTTS---------CS---SCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHH
T ss_pred CCCCCCchHHHHHHHHHHHHhhcc---------CC---CCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHH
Confidence 22 22222344556788888842 11 45899999999999999999999999998875 99999999
Q ss_pred HHHHHhhcCCCCH-HHHHHhhhCCCCCcchhhHHHHHhHhHHHHHHHHHh
Q 020787 211 IVHRMYEKDGITK-DEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDD 259 (321)
Q Consensus 211 Il~~~~~~~~l~~-~dl~~L~d~f~gq~idf~gAlra~~~d~~~~~~i~~ 259 (321)
||+.++++.+++. .|+..|+..++ +|.||..+.+|.++...++.+
T Consensus 360 Il~~~~~~~~~~~dvdl~~lA~~t~----G~sGADi~~l~~eA~~~a~r~ 405 (434)
T 4b4t_M 360 ILQIHSRKMTTDDDINWQELARSTD----EFNGAQLKAVTVEAGMIALRN 405 (434)
T ss_dssp HHHHHHHHSCBCSCCCHHHHHHHCS----SCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCCcCCHHHHHHhCC----CCCHHHHHHHHHHHHHHHHHc
Confidence 9999998775432 34444443332 255666677777766555543
No 6
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.8e-43 Score=349.25 Aligned_cols=184 Identities=21% Similarity=0.234 Sum_probs=151.4
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeeccccccccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeecccccCCCCC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG 134 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~~r~~ 134 (321)
.++||||||||||++|+|+|++++++|+.+++++|+++|+||+|+++|++|..|++. +||||||||||+++++|+
T Consensus 245 GILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~sk~vGesek~ir~lF~~Ar~~-----aP~IIfiDEiDai~~~R~ 319 (467)
T 4b4t_H 245 GILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRELFEMARTK-----KACIIFFDEIDAVGGARF 319 (467)
T ss_dssp EEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCCCSSSHHHHHHHHHHHHHHHT-----CSEEEEEECCTTTSBCCS
T ss_pred ceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhcccCCHHHHHHHHHHHHHHhc-----CCceEeeccccccccccc
Confidence 789999999999999999999999999999999999999999999999999999976 899999999999998765
Q ss_pred C--CccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccccCCCCCCCcceecC--CCHHHHHH
Q 020787 135 N--TQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQ--PNLEDILN 210 (321)
Q Consensus 135 ~--t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpALlRpGRfDr~i~~--Pd~~~R~~ 210 (321)
. ++.....+.+..+||+.||+. ....+|.||+|||||+.|||||+||||||+.|++ |+.++|.+
T Consensus 320 ~~~~~~~~~~~~~l~~lL~~lDg~------------~~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~ 387 (467)
T 4b4t_H 320 DDGAGGDNEVQRTMLELITQLDGF------------DPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRAN 387 (467)
T ss_dssp SSSCGGGGHHHHHHHHHHHHHHSS------------CCTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHH
T ss_pred CcCCCccHHHHHHHHHHHHHhhcc------------CCCCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHH
Confidence 2 222222344556677777742 1246899999999999999999999999998885 99999999
Q ss_pred HHHHHhhcCCCCH-HHHHHhhhCCCCCcchhhHHHHHhHhHHHHHHHHHh
Q 020787 211 IVHRMYEKDGITK-DEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDD 259 (321)
Q Consensus 211 Il~~~~~~~~l~~-~dl~~L~d~f~gq~idf~gAlra~~~d~~~~~~i~~ 259 (321)
||+.++++.+++. .|+..|+..++ +|.||..+.+|.++...++.+
T Consensus 388 Ilk~~l~~~~l~~dvdl~~LA~~T~----GfSGADI~~l~~eAa~~Air~ 433 (467)
T 4b4t_H 388 IFRIHSKSMSVERGIRWELISRLCP----NSTGAELRSVCTEAGMFAIRA 433 (467)
T ss_dssp HHHHHHTTSCBCSSCCHHHHHHHCC----SCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCCCCCHHHHHHHCC----CCCHHHHHHHHHHHHHHHHHc
Confidence 9999999876542 34555554333 367787888888887666654
No 7
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-42 Score=342.37 Aligned_cols=184 Identities=16% Similarity=0.236 Sum_probs=151.5
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeeccccccccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeecccccCCCCC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG 134 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~~r~~ 134 (321)
.++||||||||||++|+|+|++++++|+.+++++++++|+|+++++||++|+.|++. +||||||||||+++++|.
T Consensus 208 GiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~~~~Ge~e~~ir~lF~~A~~~-----aP~IifiDEiD~i~~~R~ 282 (428)
T 4b4t_K 208 GVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLAREN-----APSIIFIDEVDSIATKRF 282 (428)
T ss_dssp EEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCCSSCSHHHHHHHHHHHHHHHT-----CSEEEEEECTHHHHCSCS
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhccccchhHHHHHHHHHHHHHc-----CCCeeechhhhhhhcccc
Confidence 689999999999999999999999999999999999999999999999999999976 899999999999887664
Q ss_pred --CCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccccCCCCCCCcceecC---CCHHHHH
Q 020787 135 --NTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQ---PNLEDIL 209 (321)
Q Consensus 135 --~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpALlRpGRfDr~i~~---Pd~~~R~ 209 (321)
.++.....+++..+||+.|||. .+ ..+|.||+|||+|+.|||||+||||||+.|++ |+.++|.
T Consensus 283 ~~~~~~~~~~~r~l~~lL~~ldg~---------~~---~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~ 350 (428)
T 4b4t_K 283 DAQTGSDREVQRILIELLTQMDGF---------DQ---STNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERR 350 (428)
T ss_dssp SSCSCCCCHHHHHHHHHHHHHHHS---------CS---SCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHH
T ss_pred CCCCCCChHHHHHHHHHHHHhhCC---------CC---CCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHH
Confidence 2222333456777899988842 11 45899999999999999999999999998754 7999999
Q ss_pred HHHHHHhhcCCCC-HHHHHHhhhCCCCCcchhhHHHHHhHhHHHHHHHHHh
Q 020787 210 NIVHRMYEKDGIT-KDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDD 259 (321)
Q Consensus 210 ~Il~~~~~~~~l~-~~dl~~L~d~f~gq~idf~gAlra~~~d~~~~~~i~~ 259 (321)
.||+.++++.+++ ..|+..|+..+. +|.||..+.+|.++....+.+
T Consensus 351 ~Il~~~~~~~~l~~~~dl~~lA~~t~----G~sgadi~~l~~eA~~~a~r~ 397 (428)
T 4b4t_K 351 LIFGTIASKMSLAPEADLDSLIIRND----SLSGAVIAAIMQEAGLRAVRK 397 (428)
T ss_dssp HHHHHHHHSSCBCTTCCHHHHHHHTT----TCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCCCCcccCHHHHHHHCC----CCCHHHHHHHHHHHHHHHHHC
Confidence 9999999987754 245555554333 366677777887776655544
No 8
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=6.3e-43 Score=367.59 Aligned_cols=225 Identities=17% Similarity=0.191 Sum_probs=141.3
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeeccccccccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeecccccCCCCC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG 134 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~~r~~ 134 (321)
.++||||||||||++|+|+|++++++|+.+++++|+++|+||||++||++|+.|++. +||||||||||+++++|+
T Consensus 513 gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~vGese~~vr~lF~~Ar~~-----~P~IifiDEiDsl~~~R~ 587 (806)
T 3cf2_A 513 GVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQA-----APCVLFFDELDSIAKARG 587 (806)
T ss_dssp CCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTTCSSCHHHHHHHHHHHHTT-----CSEEEECSCGGGCC----
T ss_pred eEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhccccchHHHHHHHHHHHHHHc-----CCceeechhhhHHhhccC
Confidence 689999999999999999999999999999999999999999999999999999965 899999999999998776
Q ss_pred CC--ccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccccCCCCCCCcceecC--CCHHHHHH
Q 020787 135 NT--QMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQ--PNLEDILN 210 (321)
Q Consensus 135 ~t--~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpALlRpGRfDr~i~~--Pd~~~R~~ 210 (321)
.. ......+++..+||+.||+.. ...+|.||+|||||+.|||||+||||||+.|++ ||.++|.+
T Consensus 588 ~~~~~~~~~~~rv~~~lL~~mdg~~------------~~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~ 655 (806)
T 3cf2_A 588 GNIGDGGGAADRVINQILTEMDGMS------------TKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVA 655 (806)
T ss_dssp ----------CHHHHHHHHHHHSSC------------SSSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHH
T ss_pred CCCCCCchHHHHHHHHHHHHHhCCC------------CCCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHH
Confidence 22 112223567789999999531 145899999999999999999999999998885 99999999
Q ss_pred HHHHHhhcCCCC-HHHHHHhhhCCCCCcchhhHHHHHhHhHHHHHHHHHhccC---------------c---ccccchhh
Q 020787 211 IVHRMYEKDGIT-KDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGG---------------V---ENLGNKLL 271 (321)
Q Consensus 211 Il~~~~~~~~l~-~~dl~~L~d~f~gq~idf~gAlra~~~d~~~~~~i~~~~g---------------~---~~~~~~lv 271 (321)
||+.++++.+++ ..|+..|+..+ -+|+||..+.+|.++....+++.-- . +.-....|
T Consensus 656 il~~~l~~~~~~~~~dl~~la~~t----~g~SGadi~~l~~~A~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 731 (806)
T 3cf2_A 656 ILKANLRKSPVAKDVDLEFLAKMT----NGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEI 731 (806)
T ss_dssp TTTTTSSCC--CCC--------------------CHHHHHHHHHHHHHHHHHC-----------------------CCC-
T ss_pred HHHHHhcCCCCCCCCCHHHHHHhC----CCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccccccccccCcc
Confidence 999999887654 34555555432 2355666666666665555543200 0 00011346
Q ss_pred cccCCCCCCcccCCcCCHHHHHHHHHHHH
Q 020787 272 KRRKDKELPVFTPPEKTVEALLESGYSLL 300 (321)
Q Consensus 272 ~~~~~~~~~~~~~~~~s~~~l~~~g~~l~ 300 (321)
..+++.++..-.+|++|-++|-.|.+.-.
T Consensus 732 ~~~df~~al~~~~pSvs~~~l~~y~~~~~ 760 (806)
T 3cf2_A 732 RRDHFEEAMRFARRSVSDNDIRKYEMFAQ 760 (806)
T ss_dssp ---CCTTTC---------------CCCC-
T ss_pred CHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence 77788888888999999999998876543
No 9
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=8.1e-38 Score=328.89 Aligned_cols=182 Identities=18% Similarity=0.254 Sum_probs=150.3
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeeccccccccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeecccccCCCCC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG 134 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~~r~~ 134 (321)
.++||||||||||++||++|+++|++|+.++++++.++|+|++|+.+|++|++|++. +||||||||||+++++++
T Consensus 240 GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk~~gese~~lr~lF~~A~~~-----~PsIIfIDEiDal~~~r~ 314 (806)
T 3cf2_A 240 GILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN-----APAIIFIDELDAIAPKRE 314 (806)
T ss_dssp EEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSSCTTHHHHHHHHHHHHHTTS-----CSEEEEEESGGGTCCTTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhcccchHHHHHHHHHHHHHHHc-----CCeEEEEehhcccccccC
Confidence 689999999999999999999999999999999999999999999999999999855 899999999999998887
Q ss_pred CCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccccCCCCCCCcceecC--CCHHHHHHHH
Q 020787 135 NTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQ--PNLEDILNIV 212 (321)
Q Consensus 135 ~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpALlRpGRfDr~i~~--Pd~~~R~~Il 212 (321)
+++..+ .+++.++|+++||+. .+ ..+|+||+|||+|+.|||||+||||||+.|.+ |+.++|.+||
T Consensus 315 ~~~~~~-~~riv~~LL~~mdg~---------~~---~~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL 381 (806)
T 3cf2_A 315 KTHGEV-ERRIVSQLLTLMDGL---------KQ---RAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEIL 381 (806)
T ss_dssp TCCCTT-HHHHHHHHHTHHHHC---------CG---GGCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHH
T ss_pred CCCChH-HHHHHHHHHHHHhcc---------cc---cCCEEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHH
Confidence 555444 456778999999953 11 35799999999999999999999999998875 9999999999
Q ss_pred HHHhhcCCCC-HHHHHHhhhCCCCCcchhhHHHHHhHhHHHHHHHHH
Q 020787 213 HRMYEKDGIT-KDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWID 258 (321)
Q Consensus 213 ~~~~~~~~l~-~~dl~~L~d~f~gq~idf~gAlra~~~d~~~~~~i~ 258 (321)
+.++++..++ ..|+..|+..++| |.||..+.++.++...++.
T Consensus 382 ~~~l~~~~~~~dvdl~~lA~~T~G----fsgaDL~~Lv~eA~~~A~~ 424 (806)
T 3cf2_A 382 QIHTKNMKLADDVDLEQVANETHG----HVGADLAALCSEAALQAIR 424 (806)
T ss_dssp HHTCSSSEECTTCCHHHHHHHCCS----CCHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCCCcccCHHHHHHhcCC----CCHHHHHHHHHHHHHHHHH
Confidence 9999877543 2445555543333 5556666666666544443
No 10
>3thg_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; four-helix bundle, rubisco reactivation, chloroplast stroma, ATPase; 1.88A {Larrea tridentata}
Probab=100.00 E-value=6.4e-36 Score=246.10 Aligned_cols=102 Identities=34% Similarity=0.759 Sum_probs=95.7
Q ss_pred CHHHHHHHHHHHhhcCCCCHHHHHHhhhCCCCCcchhhHHHHHhHhHHHHHHHHHhccCcccccchhhcccCCCCCCccc
Q 020787 204 NLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVFT 283 (321)
Q Consensus 204 d~~~R~~Il~~~~~~~~l~~~dl~~L~d~f~gq~idf~gAlra~~~d~~~~~~i~~~~g~~~~~~~lv~~~~~~~~~~~~ 283 (321)
++++|..|++.||++++++.+|+++|||+||||+||||||||||+||++|++||+++ |++++|++||||+++ +|+|+
T Consensus 6 treDrigiv~gif~~Dgls~~dv~~LVd~Fp~QsiDFFGALRsR~YDd~Vr~wI~~v-G~e~ig~~Lvns~e~--~P~F~ 82 (107)
T 3thg_A 6 TREDRIGVCKGIFRTDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWVSEV-GVDTIGKKLVNSKEG--PPSFE 82 (107)
T ss_dssp CHHHHHHHHHHHTTTTTCCHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHTTCCCC--CCCCC
T ss_pred cHHHHHHHHHHHhccCCCCHHHHHHHHHcCCCCCchHHHHHHHHHhHHHHHHHHHHh-CHHHHhHHHHcCCCC--CCCCC
Confidence 889999999999999999999999999999999999999999999999999999999 999999999999987 69999
Q ss_pred CCcCCHHHHHHHHHHHHHHHHHHHh
Q 020787 284 PPEKTVEALLESGYSLLREQQLIME 308 (321)
Q Consensus 284 ~~~~s~~~l~~~g~~l~~eq~~v~~ 308 (321)
+|++||++|++||++|++|||||++
T Consensus 83 ~P~~tl~~Lle~G~~Lv~EQ~~V~~ 107 (107)
T 3thg_A 83 QPKMTIDKLLGYGGMLVQEQENVKR 107 (107)
T ss_dssp CCCCCHHHHHHHHHHHHTTC-----
T ss_pred CCcCCHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999985
No 11
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.8e-33 Score=263.89 Aligned_cols=183 Identities=16% Similarity=0.207 Sum_probs=152.8
Q ss_pred hHhccccCCCCcHHHHHHHHHHHc-CCceEEeeccccccccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeecccccCCC
Q 020787 54 ASLCIWGGKGQGKSFQTELIFQAM-GIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGR 132 (321)
Q Consensus 54 ~iLgL~GPPGcGKTllaravA~e~-g~~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~~r 132 (321)
..++||||||||||++|+++|+++ +.+|+.++++++.++|.|++++.++++|..|+.. +||||||||||+++++
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~~~~g~~~~~~~~lf~~a~~~-----~~~vl~iDEid~l~~~ 120 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLAREN-----KPSIIFIDEIDSLCGS 120 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCCSSCCSCHHHHHHHHHHHHHT-----SSEEEEEETTTGGGCC
T ss_pred ceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHhhhhhHHHHHHHHHHHHHHhc-----CCcEEEeecHHHhccc
Confidence 368999999999999999999999 9999999999999999999999999999999854 8999999999999887
Q ss_pred CCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccccCCCCCCCcceecC--CCHHHHHH
Q 020787 133 FGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQ--PNLEDILN 210 (321)
Q Consensus 133 ~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpALlRpGRfDr~i~~--Pd~~~R~~ 210 (321)
+....... .+.+..+|++.+|+.. . ...+|.||+|||+|+.||++|+| |||+.+++ |+.++|.+
T Consensus 121 ~~~~~~~~-~~~~~~~ll~~ld~~~----------~-~~~~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~ 186 (322)
T 1xwi_A 121 RSENESEA-ARRIKTEFLVQMQGVG----------V-DNDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEPHARAA 186 (322)
T ss_dssp SSSCCTTH-HHHHHHHHHHHHHCSS----------S-CCTTEEEEEEESCTTTSCHHHHH--TCCEEEECCCCCHHHHHH
T ss_pred cccccchH-HHHHHHHHHHHHhccc----------c-cCCCEEEEEecCCcccCCHHHHh--hcCeEEEeCCcCHHHHHH
Confidence 66433333 3456678888888531 0 13579999999999999999999 99997764 99999999
Q ss_pred HHHHHhhcCC--CCHHHHHHhhhCCCCCcchhhHHHHHhHhHHHHHHHHHh
Q 020787 211 IVHRMYEKDG--ITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDD 259 (321)
Q Consensus 211 Il~~~~~~~~--l~~~dl~~L~d~f~gq~idf~gAlra~~~d~~~~~~i~~ 259 (321)
|++.++++.+ ++..++..|+.... .|.||....++.++....+.+
T Consensus 187 il~~~l~~~~~~l~~~~l~~la~~t~----G~sgadl~~l~~~A~~~a~r~ 233 (322)
T 1xwi_A 187 MFKLHLGTTQNSLTEADFRELGRKTD----GYSGADISIIVRDALMQPVRK 233 (322)
T ss_dssp HHHHHHTTCCBCCCHHHHHHHHHTCT----TCCHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHhcCCCCCCHHHHHHHHHHcC----CCCHHHHHHHHHHHHHHHHHH
Confidence 9999998765 57788888887554 367787778888776666655
No 12
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=100.00 E-value=9.5e-34 Score=261.07 Aligned_cols=185 Identities=18% Similarity=0.248 Sum_probs=145.2
Q ss_pred hccccCCCCcHHHHHHHHHHHcCCceEEeeccccccccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeecccccCCCCCC
Q 020787 56 LCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGN 135 (321)
Q Consensus 56 LgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~~r~~~ 135 (321)
++||||||||||++++++|++++..++.++++++.++|.|++++.|+.+|..|+.. .||++||||||+++++++.
T Consensus 47 vlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~-----~p~i~~~Deid~~~~~r~~ 121 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNS-----APCVIFFDEVDALCPRRSD 121 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSSTTHHHHHHHHHHHHHHHHT-----CSEEEEEETCTTTCC----
T ss_pred EEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhc-----CCCeEeeehhhhhhcccCC
Confidence 89999999999999999999999999999999999999999999999999999754 7999999999998876542
Q ss_pred CccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccccCCCCCCCcceecC--CCHHHHHHHHH
Q 020787 136 TQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQ--PNLEDILNIVH 213 (321)
Q Consensus 136 t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpALlRpGRfDr~i~~--Pd~~~R~~Il~ 213 (321)
..... ...+..++++.||+- .....+.++++||+|+.||||++||||||+.+++ |+.++|.+||+
T Consensus 122 ~~~~~-~~~~~~~~l~~Lsgg------------~~~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~ 188 (274)
T 2x8a_A 122 RETGA-SVRVVNQLLTEMDGL------------EARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILK 188 (274)
T ss_dssp ------CTTHHHHHHHHHHTC------------CSTTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHH
T ss_pred CcchH-HHHHHHHHHHhhhcc------------cccCCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHH
Confidence 21111 224556777777741 1145688899999999999999999999998885 99999999999
Q ss_pred HHhhcC---CC-CHHHHHHhhhCCCCCcchhhHHHHHhHhHHHHHHHHHhc
Q 020787 214 RMYEKD---GI-TKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDI 260 (321)
Q Consensus 214 ~~~~~~---~l-~~~dl~~L~d~f~gq~idf~gAlra~~~d~~~~~~i~~~ 260 (321)
.+++.. ++ ...++..|+..+. +-.|.||..+.++.++....+.+.
T Consensus 189 ~~~~~~~~~~~~~~~~~~~la~~~~--~~g~sgadl~~l~~~a~~~a~~~~ 237 (274)
T 2x8a_A 189 TITKNGTKPPLDADVNLEAIAGDLR--CDCYTGADLSALVREASICALRQE 237 (274)
T ss_dssp HHTTTTBTTBBCTTCCHHHHHTCSG--GGSCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcccCCCCccccCHHHHHHhhc--cCCcCHHHHHHHHHHHHHHHHHHH
Confidence 988642 22 2355666664221 125778888888888887777654
No 13
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=100.00 E-value=2.1e-33 Score=259.46 Aligned_cols=165 Identities=18% Similarity=0.266 Sum_probs=135.4
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeeccccccccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeecccccCCCCC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG 134 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~~r~~ 134 (321)
.++||||||||||++|+++|++++.+|+.++++++.++|.|++++.++.+|..|... +||||||||||++++.++
T Consensus 51 ~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~~~g~~~~~~~~~f~~a~~~-----~p~il~iDEid~l~~~~~ 125 (301)
T 3cf0_A 51 GVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQA-----APCVLFFDELDSIAKARG 125 (301)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHHHHTTCTTHHHHHHHHHHHT-----CSEEEEECSTTHHHHHHT
T ss_pred eEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhhhcCchHHHHHHHHHHHHhc-----CCeEEEEEChHHHhhccC
Confidence 689999999999999999999999999999999999999999999999999999854 899999999999876543
Q ss_pred CC--ccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccccCCCCCCCcceecC--CCHHHHHH
Q 020787 135 NT--QMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQ--PNLEDILN 210 (321)
Q Consensus 135 ~t--~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpALlRpGRfDr~i~~--Pd~~~R~~ 210 (321)
.. ......+.+..+|++.+|+.. ...+|.||+|||+++.||++++|||||++.+++ |+.++|.+
T Consensus 126 ~~~~~~~~~~~~~~~~lL~~l~~~~------------~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~ 193 (301)
T 3cf0_A 126 GNIGDGGGAADRVINQILTEMDGMS------------TKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVA 193 (301)
T ss_dssp TTTCCSSCSCCHHHHHHHHHHHSSC------------TTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHH
T ss_pred CCcCCcchHHHHHHHHHHHHhhccc------------CCCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHH
Confidence 11 111112356677888888421 135799999999999999999999999997764 99999999
Q ss_pred HHHHHhhcCC----CCHHHHHHhhhCCCCC
Q 020787 211 IVHRMYEKDG----ITKDEVGSIVKTFPNQ 236 (321)
Q Consensus 211 Il~~~~~~~~----l~~~dl~~L~d~f~gq 236 (321)
|++.++++.+ ++.+.+...+.+|+|.
T Consensus 194 il~~~l~~~~~~~~~~~~~la~~~~g~sg~ 223 (301)
T 3cf0_A 194 ILKANLRKSPVAKDVDLEFLAKMTNGFSGA 223 (301)
T ss_dssp HHHHHHTTSCBCSSCCHHHHHHTCSSCCHH
T ss_pred HHHHHHccCCCCccchHHHHHHHcCCCCHH
Confidence 9999887654 4455666666566554
No 14
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.98 E-value=7e-33 Score=257.76 Aligned_cols=181 Identities=17% Similarity=0.239 Sum_probs=146.3
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeeccccccccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeecccccCCCCC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG 134 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~~r~~ 134 (321)
.++||||||||||++|+++|++++.+|+.++++++.++|.|++++.++++|..|+.. +||||||||||+++++++
T Consensus 53 ~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~-----~~~vl~iDEid~l~~~~~ 127 (322)
T 3eie_A 53 GILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMAREN-----KPSIIFIDQVDALTGTRG 127 (322)
T ss_dssp EEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHHTTTGGGHHHHHHHHHHHHHHT-----SSEEEEEECGGGGSCC--
T ss_pred eEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHhhcccchHHHHHHHHHHHHHhc-----CCeEEEechhhhhhccCC
Confidence 689999999999999999999999999999999999999999999999999999855 899999999999988765
Q ss_pred CCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccccCCCCCCCcceecC--CCHHHHHHHH
Q 020787 135 NTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQ--PNLEDILNIV 212 (321)
Q Consensus 135 ~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpALlRpGRfDr~i~~--Pd~~~R~~Il 212 (321)
..+... .+.+..+|+..+|+.. ....+|.||+|||+|+.||++|+| ||++.+++ |+.++|.+|+
T Consensus 128 ~~~~~~-~~~~~~~ll~~l~~~~-----------~~~~~v~vi~atn~~~~ld~al~~--Rf~~~i~~~~p~~~~r~~il 193 (322)
T 3eie_A 128 EGESEA-SRRIKTELLVQMNGVG-----------NDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMF 193 (322)
T ss_dssp ----CC-THHHHHHHHHHHGGGG-----------TSCCCEEEEEEESCGGGSCHHHHH--HCCEEEECCCCCHHHHHHHH
T ss_pred CCcchH-HHHHHHHHHHHhcccc-----------ccCCceEEEEecCChhhCCHHHHc--ccCeEEEeCCCCHHHHHHHH
Confidence 333333 3556678888888421 114579999999999999999999 99997764 9999999999
Q ss_pred HHHhhcCC--CCHHHHHHhhhCCCCCcchhhHHHHHhHhHHHHHHHHH
Q 020787 213 HRMYEKDG--ITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWID 258 (321)
Q Consensus 213 ~~~~~~~~--l~~~dl~~L~d~f~gq~idf~gAlra~~~d~~~~~~i~ 258 (321)
+.++++.+ ++..++..|+....| |.||....++.++....+.
T Consensus 194 ~~~~~~~~~~~~~~~l~~la~~t~g----~sg~di~~l~~~a~~~a~r 237 (322)
T 3eie_A 194 EINVGDTPCVLTKEDYRTLGAMTEG----YSGSDIAVVVKDALMQPIR 237 (322)
T ss_dssp HHHHTTCCCCCCHHHHHHHHHTTTT----CCHHHHHHHHHHHTTHHHH
T ss_pred HHHhccCCCCCCHHHHHHHHHHcCC----CCHHHHHHHHHHHHHHHHH
Confidence 99998775 567888888865443 6666666666665444444
No 15
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.98 E-value=2.5e-32 Score=259.19 Aligned_cols=182 Identities=17% Similarity=0.235 Sum_probs=145.7
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeeccccccccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeecccccCCCCC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG 134 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~~r~~ 134 (321)
.++||||||||||++|+++|++++.+|+.++++++.++|.|++++.++.+|..|+.. +||||||||||++++.++
T Consensus 86 ~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~-----~~~vl~iDEid~l~~~r~ 160 (355)
T 2qp9_X 86 GILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMAREN-----KPSIIFIDQVDALTGTRG 160 (355)
T ss_dssp CEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHSCC---CHHHHHHHHHHHHHT-----SSEEEEEECGGGGTC---
T ss_pred eEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhhhhcchHHHHHHHHHHHHHHc-----CCeEEEEechHhhcccCC
Confidence 589999999999999999999999999999999999999999999999999999854 899999999999987765
Q ss_pred CCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccccCCCCCCCcceecC--CCHHHHHHHH
Q 020787 135 NTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQ--PNLEDILNIV 212 (321)
Q Consensus 135 ~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpALlRpGRfDr~i~~--Pd~~~R~~Il 212 (321)
..+... .+.+..+|+..+|+.. . ...+|.||+|||+|+.||++|+| |||+.+++ |+.++|.+||
T Consensus 161 ~~~~~~-~~~~~~~ll~~l~~~~----------~-~~~~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il 226 (355)
T 2qp9_X 161 EGESEA-SRRIKTELLVQMNGVG----------N-DSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMF 226 (355)
T ss_dssp ---CTH-HHHHHHHHHHHHHHCC--------------CCEEEEEEESCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHH
T ss_pred CCcchH-HHHHHHHHHHHhhccc----------c-cCCCeEEEeecCCcccCCHHHHc--ccCEEEEeCCcCHHHHHHHH
Confidence 333333 4566678888888421 1 13579999999999999999999 99997764 9999999999
Q ss_pred HHHhhcCC--CCHHHHHHhhhCCCCCcchhhHHHHHhHhHHHHHHHHHh
Q 020787 213 HRMYEKDG--ITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDD 259 (321)
Q Consensus 213 ~~~~~~~~--l~~~dl~~L~d~f~gq~idf~gAlra~~~d~~~~~~i~~ 259 (321)
+.+++..+ ++..++..|+.... .|.||....++.++....+.+
T Consensus 227 ~~~l~~~~~~~~~~~l~~la~~t~----G~sg~dl~~l~~~A~~~a~~~ 271 (355)
T 2qp9_X 227 EINVGDTPSVLTKEDYRTLGAMTE----GYSGSDIAVVVKDALMQPIRK 271 (355)
T ss_dssp HHHHTTSCBCCCHHHHHHHHHHTT----TCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhCCCCCCHHHHHHHHHHcC----CCCHHHHHHHHHHHHHHHHHH
Confidence 99998775 56778888876554 367787788888877776665
No 16
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.97 E-value=2.5e-31 Score=259.92 Aligned_cols=182 Identities=16% Similarity=0.211 Sum_probs=141.1
Q ss_pred HhccccCCCCcHHHHHHHHHHHc-CCceEEeeccccccccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeecccccCCCC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM-GIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRF 133 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~-g~~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~~r~ 133 (321)
.++||||||||||++|+++|+++ +.+|+.++++++.++|.|++++.++.+|..|+.. +||||||||||++++.+
T Consensus 169 ~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~-----~~~vl~iDEid~l~~~~ 243 (444)
T 2zan_A 169 GILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLAREN-----KPSIIFIDEIDSLCGSR 243 (444)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC---------CCCTHHHHHHHHHHS-----CSEEEEESCTTTTCCCS
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHhhhcchHHHHHHHHHHHHHHc-----CCeEEEEechHhhccCC
Confidence 68999999999999999999999 9999999999999999999999999999999754 89999999999998776
Q ss_pred CCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccccCCCCCCCcceecC--CCHHHHHHH
Q 020787 134 GNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQ--PNLEDILNI 211 (321)
Q Consensus 134 ~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpALlRpGRfDr~i~~--Pd~~~R~~I 211 (321)
+..+... .+.+..+|++.+|+.. . ...+|.||+|||+|+.|||+|+| |||+.+++ |+.++|..|
T Consensus 244 ~~~~~~~-~~~~~~~lL~~l~~~~----------~-~~~~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~i 309 (444)
T 2zan_A 244 SENESEA-ARRIKTEFLVQMQGVG----------V-DNDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEAHARAAM 309 (444)
T ss_dssp SCCCCGG-GHHHHHHHHTTTTCSS----------C-CCSSCEEEEEESCGGGSCHHHHT--TCCEEEECCCCCHHHHHHH
T ss_pred CCccccH-HHHHHHHHHHHHhCcc----------c-CCCCEEEEecCCCccccCHHHHh--hcceEEEeCCcCHHHHHHH
Confidence 6433333 3567778888888521 0 13579999999999999999999 99987764 999999999
Q ss_pred HHHHhhcCC--CCHHHHHHhhhCCCCCcchhhHHHHHhHhHHHHHHHHHh
Q 020787 212 VHRMYEKDG--ITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDD 259 (321)
Q Consensus 212 l~~~~~~~~--l~~~dl~~L~d~f~gq~idf~gAlra~~~d~~~~~~i~~ 259 (321)
++.+++..+ ++..++..|+.... .|.||....++.++....+.+
T Consensus 310 l~~~l~~~~~~l~~~~l~~la~~t~----G~sgadl~~l~~~a~~~a~r~ 355 (444)
T 2zan_A 310 FRLHLGSTQNSLTEADFQELGRKTD----GYSGADISIIVRDALMQPVRK 355 (444)
T ss_dssp HHHHHTTSCEECCHHHHHHHHHHTT----TCCHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHcC----CCCHHHHHHHHHHHHHHHHHH
Confidence 999988765 57778887776544 366677777777766555554
No 17
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.97 E-value=8.6e-31 Score=261.23 Aligned_cols=178 Identities=17% Similarity=0.197 Sum_probs=138.6
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeeccccccccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeecccccCCCCC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG 134 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~~r~~ 134 (321)
.++||||||||||++|+++|++++++|+.++++++.+.|.|++++.+|.+|+.|... +||||||||||++.++++
T Consensus 51 gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~~~g~~~~~~r~lf~~A~~~-----~p~ILfIDEid~l~~~r~ 125 (476)
T 2ce7_A 51 GILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAH-----APCIVFIDEIDAVGRHRG 125 (476)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTCCTTHHHHHHHHHHHHHHHT-----CSEEEEEETGGGTCCC--
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHHHhcccHHHHHHHHHHHHhc-----CCCEEEEechhhhhhhcc
Confidence 378999999999999999999999999999999999999999999999999999854 899999999999987664
Q ss_pred C-C-ccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccccCCCCCCCcceecC--CCHHHHHH
Q 020787 135 N-T-QMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQ--PNLEDILN 210 (321)
Q Consensus 135 ~-t-~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpALlRpGRfDr~i~~--Pd~~~R~~ 210 (321)
. . +.......+..+|++.||+. .. ..+|.||+|||+|+.|||+|+||||||+.+.+ |+.++|.+
T Consensus 126 ~~~~g~~~~~~~~l~~LL~~ld~~---------~~---~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~ 193 (476)
T 2ce7_A 126 AGLGGGHDEREQTLNQLLVEMDGF---------DS---KEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKK 193 (476)
T ss_dssp -------CHHHHHHHHHHHHHHHS---------CG---GGTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHH
T ss_pred cccCcCcHHHHHHHHHHHHHHhcc---------CC---CCCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHH
Confidence 2 1 22222344566788877731 11 34799999999999999999999999997764 99999999
Q ss_pred HHHHHhhcCCCC-HHHHHHhhhCCCCCcchhhHHHHHhHhHHHH
Q 020787 211 IVHRMYEKDGIT-KDEVGSIVKTFPNQALDFYGALRSRTYDRSI 253 (321)
Q Consensus 211 Il~~~~~~~~l~-~~dl~~L~d~f~gq~idf~gAlra~~~d~~~ 253 (321)
|++.+++..+++ ..++..++..++| |.||..+.++.++.
T Consensus 194 Il~~~~~~~~l~~~v~l~~la~~t~G----~sgadL~~lv~~Aa 233 (476)
T 2ce7_A 194 ILEIHTRNKPLAEDVNLEIIAKRTPG----FVGADLENLVNEAA 233 (476)
T ss_dssp HHHHHHTTSCBCTTCCHHHHHHTCTT----CCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcchhhHHHHHHhcCC----CcHHHHHHHHHHHH
Confidence 999998877654 2345566665554 34444444444443
No 18
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.97 E-value=2.1e-32 Score=286.15 Aligned_cols=220 Identities=16% Similarity=0.181 Sum_probs=152.1
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeeccccccccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeecccccCCCCC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG 134 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~~r~~ 134 (321)
.++||||||||||++|+++|++++.+|+.++++++.++|+|++++.++.+|+.|+.. .||||||||||++++.++
T Consensus 513 ~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~-----~p~vl~iDEid~l~~~r~ 587 (806)
T 1ypw_A 513 GVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQA-----APCVLFFDELDSIAKARG 587 (806)
T ss_dssp CCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTTCCTTTSSHHHHHHHHHHHHH-----CSBCCCCSSHHHHCCTTT
T ss_pred eeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhhhhhcCccHHHHHHHHHHHHhc-----CCeEEEEEChhhhhhhcc
Confidence 689999999999999999999999999999999999999999999999999999876 799999999999987765
Q ss_pred CCcc--chhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccccCCCCCCCcceecC--CCHHHHHH
Q 020787 135 NTQM--TVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQ--PNLEDILN 210 (321)
Q Consensus 135 ~t~~--~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpALlRpGRfDr~i~~--Pd~~~R~~ 210 (321)
+... ....+.+..+|++.||+. ....+|.||+|||+|+.|||||+||||||+.+++ |+.++|.+
T Consensus 588 ~~~~~~~~~~~~v~~~LL~~ld~~------------~~~~~v~vI~tTN~~~~ld~allrpgRf~~~i~~~~p~~~~r~~ 655 (806)
T 1ypw_A 588 GNIGDGGGAADRVINQILTEMDGM------------STKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVA 655 (806)
T ss_dssp TCCSHHHHHHHHHHHHHHTTCC------------------CCBCCCCCBSCGGGSCTTSSGGGTTSCCCCCCCCCSHHHH
T ss_pred CCCCCcchhHHHHHHHHHHHHhcc------------cccCCeEEEEecCCcccCCHHHhCccccCceeecCCCCHHHHHH
Confidence 3221 122456777899888842 1145899999999999999999999999998775 89999999
Q ss_pred HHHHHhhcCCCC----HHHHHHhhhCCCCCcchhhHHHHHhHhHHHHHHHHHhccCcc-------------------ccc
Q 020787 211 IVHRMYEKDGIT----KDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVE-------------------NLG 267 (321)
Q Consensus 211 Il~~~~~~~~l~----~~dl~~L~d~f~gq~idf~gAlra~~~d~~~~~~i~~~~g~~-------------------~~~ 267 (321)
|++.++++.++. ...+.+..++|+| |....++.++....+.+. -.. ...
T Consensus 656 Il~~~l~~~~~~~~~~l~~la~~t~g~sg-------adi~~l~~~a~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 727 (806)
T 1ypw_A 656 ILKANLRKSPVAKDVDLEFLAKMTNGFSG-------ADLTEICQRACKLAIRES-IESEIRRERERQTNPSAMEVEEDDP 727 (806)
T ss_dssp HTTTTTSCC----CCCCSCSCGGGSSSCC-------HHHHHHHHHHHHHHHSCC-------------------------C
T ss_pred HHHHHhccCCCCcccCHHHHHHhccccCH-------HHHHHHHHHHHHHHHHHH-HHHHHhhhhhhcccccccccccccc
Confidence 999988776543 3344444444444 555555555555554432 000 001
Q ss_pred chhhcccCCCCCCcccCCcCCHHHHHHHHHHH
Q 020787 268 NKLLKRRKDKELPVFTPPEKTVEALLESGYSL 299 (321)
Q Consensus 268 ~~lv~~~~~~~~~~~~~~~~s~~~l~~~g~~l 299 (321)
...+..+++.++....+|++|.+++-+|.+.-
T Consensus 728 ~~~i~~~~f~~a~~~~~~svs~~~~~~ye~~~ 759 (806)
T 1ypw_A 728 VPEIRRDHFEEAMRFARRSVSDNDIRKYEMFA 759 (806)
T ss_dssp CTTTTTTSSCCCCCC-----------------
T ss_pred cCccCHHHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence 23466677777777788999998888876543
No 19
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.97 E-value=2e-29 Score=225.05 Aligned_cols=182 Identities=16% Similarity=0.189 Sum_probs=142.7
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeeccccccccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeecccccCCCCC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG 134 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~~r~~ 134 (321)
.++||||||||||++|+++|++++.+++.++++++.+.+.|++++.++.+|..|.. ..||+|||||||++.+.+.
T Consensus 47 ~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~a~~-----~~~~il~iDeid~l~~~~~ 121 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKK-----AAPCIIFIDEIDAVGRQRG 121 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTSCCCCCHHHHHHHHHHHHT-----TCSEEEEETTHHHHTCCCS
T ss_pred eEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHHHhhhhhHHHHHHHHHHHHH-----cCCeeehhhhhhhhccCCC
Confidence 47899999999999999999999999999999999999999999999999999974 3799999999999876554
Q ss_pred -CCcc-chhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccccCCCCCCCcceec--CCCHHHHHH
Q 020787 135 -NTQM-TVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYW--QPNLEDILN 210 (321)
Q Consensus 135 -~t~~-~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpALlRpGRfDr~i~--~Pd~~~R~~ 210 (321)
..+. ....+.+..++++.+|+. . ...++.||+|||+|+.||++++|+||||+.+. .|+.++|.+
T Consensus 122 ~~~~~~~~~~~~~~~~ll~~l~~~---------~---~~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~ 189 (257)
T 1lv7_A 122 AGLGGGHDEREQTLNQMLVEMDGF---------E---GNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQ 189 (257)
T ss_dssp TTSCCTTCHHHHHHHHHHHHHHTC---------C---SSSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHH
T ss_pred CCcCCCchHHHHHHHHHHHHhhCc---------c---cCCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHH
Confidence 2111 112234556777777732 1 13579999999999999999999999999776 499999999
Q ss_pred HHHHHhhcCCCCH-HHHHHhhhCCCCCcchhhHHHHHhHhHHHHHHHH
Q 020787 211 IVHRMYEKDGITK-DEVGSIVKTFPNQALDFYGALRSRTYDRSISKWI 257 (321)
Q Consensus 211 Il~~~~~~~~l~~-~dl~~L~d~f~gq~idf~gAlra~~~d~~~~~~i 257 (321)
|++.+++..+++. .++..++..++| |.++....++..+.....
T Consensus 190 il~~~~~~~~l~~~~~~~~la~~~~G----~~~~dl~~l~~~a~~~a~ 233 (257)
T 1lv7_A 190 ILKVHMRRVPLAPDIDAAIIARGTPG----FSGADLANLVNEAALFAA 233 (257)
T ss_dssp HHHHHHTTSCBCTTCCHHHHHHTCTT----CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCccccHHHHHHHcCC----CCHHHHHHHHHHHHHHHH
Confidence 9999888776653 445666665555 455555556655544433
No 20
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.96 E-value=3.5e-29 Score=225.13 Aligned_cols=180 Identities=18% Similarity=0.227 Sum_probs=138.4
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeeccccccccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeecccccCCCCC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG 134 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~~r~~ 134 (321)
.++||||||||||++|+++|++++.+++.++++++.++|.|++++.++.+|..|... +||||||||||.+++++.
T Consensus 53 ~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~vl~iDEid~l~~~~~ 127 (285)
T 3h4m_A 53 GILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKKFIGEGASLVKDIFKLAKEK-----APSIIFIDEIDAIAAKRT 127 (285)
T ss_dssp EEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCCCSTTHHHHHHHHHHHHHHHT-----CSEEEEEETTHHHHBCCS
T ss_pred eEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHHhccchHHHHHHHHHHHHHHc-----CCeEEEEECHHHhcccCc
Confidence 589999999999999999999999999999999999999999999999999999854 899999999999887655
Q ss_pred CCc--cchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccccCCCCCCCcceecC--CCHHHHHH
Q 020787 135 NTQ--MTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQ--PNLEDILN 210 (321)
Q Consensus 135 ~t~--~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpALlRpGRfDr~i~~--Pd~~~R~~ 210 (321)
+.. .....+.....|++.+++. ....++.||+|||+++.||++++|+|||++.+.+ |+.++|.+
T Consensus 128 ~~~~~~~~~~~~~l~~ll~~~~~~------------~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~ 195 (285)
T 3h4m_A 128 DALTGGDREVQRTLMQLLAEMDGF------------DARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLE 195 (285)
T ss_dssp SSCCGGGGHHHHHHHHHHHHHHTT------------CSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHH
T ss_pred cccCCccHHHHHHHHHHHHHhhCC------------CCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHH
Confidence 322 1222233444455555421 1135799999999999999999999999987764 99999999
Q ss_pred HHHHHhhcCCC----CHHHHHHhhhCCCCCcchhhHHHHHhHhHHHHHHHHH
Q 020787 211 IVHRMYEKDGI----TKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWID 258 (321)
Q Consensus 211 Il~~~~~~~~l----~~~dl~~L~d~f~gq~idf~gAlra~~~d~~~~~~i~ 258 (321)
|++.+++...+ +..++...+.+|++ +....++..+....+.
T Consensus 196 il~~~~~~~~~~~~~~~~~l~~~~~g~~~-------~~i~~l~~~a~~~a~~ 240 (285)
T 3h4m_A 196 ILKIHTRKMNLAEDVNLEEIAKMTEGCVG-------AELKAICTEAGMNAIR 240 (285)
T ss_dssp HHHHHHTTSCBCTTCCHHHHHHHCTTCCH-------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCcCCHHHHHHHcCCCCH-------HHHHHHHHHHHHHHHH
Confidence 99988876554 34555555554443 4334455555444433
No 21
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.96 E-value=1.2e-29 Score=224.08 Aligned_cols=178 Identities=17% Similarity=0.252 Sum_probs=129.7
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeeccccccccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeecccccCCCCC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG 134 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~~r~~ 134 (321)
.++||||||||||++|+++|++++.+++.++++++.+.|.|++++.++.+|+.|... +||||||||||.+.++++
T Consensus 41 ~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~-----~~~vl~iDeid~l~~~~~ 115 (262)
T 2qz4_A 41 GALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIGGLGAARVRSLFKEARAR-----APCIVYIDEIDAVGKKRS 115 (262)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSSTTHHHHHHHHHHHHHHHT-----CSEEEEEECC--------
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhccChhHHHHHHHHHHHHhc-----CCeEEEEeCcchhhcccc
Confidence 578999999999999999999999999999999999999999999999999999754 799999999999887654
Q ss_pred CCcc---chhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccccCCCCCCCcceec--CCCHHHHH
Q 020787 135 NTQM---TVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYW--QPNLEDIL 209 (321)
Q Consensus 135 ~t~~---~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpALlRpGRfDr~i~--~Pd~~~R~ 209 (321)
.... ....+.....|++.+++. ....++.||+|||+++.||++++|+||||+.++ .|+.++|.
T Consensus 116 ~~~~~~~~~~~~~~l~~ll~~~~~~------------~~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~ 183 (262)
T 2qz4_A 116 TTMSGFSNTEEEQTLNQLLVEMDGM------------GTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERR 183 (262)
T ss_dssp -----------CHHHHHHHHHHHTC------------CTTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHH
T ss_pred ccccCccchhHHHHHHHHHHHhhCc------------CCCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHH
Confidence 2211 111233445666666632 113579999999999999999999999999877 49999999
Q ss_pred HHHHHHhhcCCCCH--H-HHHHhhhCCCCCcchhhHHHHHhHhHHHH
Q 020787 210 NIVHRMYEKDGITK--D-EVGSIVKTFPNQALDFYGALRSRTYDRSI 253 (321)
Q Consensus 210 ~Il~~~~~~~~l~~--~-dl~~L~d~f~gq~idf~gAlra~~~d~~~ 253 (321)
+|++.+++..++.. . .+..++...+| |.++....++..+.
T Consensus 184 ~il~~~~~~~~~~~~~~~~~~~l~~~~~g----~~~~~l~~l~~~a~ 226 (262)
T 2qz4_A 184 EIFEQHLKSLKLTQSSTFYSQRLAELTPG----FSGADIANICNEAA 226 (262)
T ss_dssp HHHHHHHHHTTCCBTHHHHHHHHHHTCTT----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCcchhhHHHHHHHHCCC----CCHHHHHHHHHHHH
Confidence 99999988776542 1 23455543332 44444445555443
No 22
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.96 E-value=2.4e-29 Score=250.70 Aligned_cols=184 Identities=18% Similarity=0.241 Sum_probs=150.7
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeeccccccccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeecccccCCCCC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG 134 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~~r~~ 134 (321)
.++||||||||||++|+++|++++.+|+.++++++.++|.|+++..++.+|..|.. ++||||||||||+++++++
T Consensus 240 ~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~~g~~~~~~~~~f~~A~~-----~~p~iLfLDEId~l~~~~~ 314 (489)
T 3hu3_A 240 GILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEK-----NAPAIIFIDELDAIAPKRE 314 (489)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSCTTHHHHHHHHHHHHHHH-----TCSEEEEEESHHHHCBCTT
T ss_pred cEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhhcchhHHHHHHHHHHHHh-----cCCcEEEecchhhhccccc
Confidence 48999999999999999999999999999999999999999999999999999974 4899999999999998776
Q ss_pred CCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccccCCCCCCCcceec--CCCHHHHHHHH
Q 020787 135 NTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYW--QPNLEDILNIV 212 (321)
Q Consensus 135 ~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpALlRpGRfDr~i~--~Pd~~~R~~Il 212 (321)
..+... .+.++.+|+.++|+. ....++.||+|||+++.||++|+|+|||++.+. .|+.++|.+||
T Consensus 315 ~~~~~~-~~~~~~~LL~~ld~~------------~~~~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL 381 (489)
T 3hu3_A 315 KTHGEV-ERRIVSQLLTLMDGL------------KQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEIL 381 (489)
T ss_dssp SCCCHH-HHHHHHHHHHHHHHS------------CTTSCEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHH
T ss_pred cccchH-HHHHHHHHHHHhhcc------------ccCCceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHH
Confidence 444333 456778899988832 113579999999999999999999999999776 49999999999
Q ss_pred HHHhhcCCCC-HHHHHHhhhCCCCCcchhhHHHHHhHhHHHHHHHHHhc
Q 020787 213 HRMYEKDGIT-KDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDI 260 (321)
Q Consensus 213 ~~~~~~~~l~-~~dl~~L~d~f~gq~idf~gAlra~~~d~~~~~~i~~~ 260 (321)
+.+++...+. ..++..++... ..|.++....++.++....+.+.
T Consensus 382 ~~~~~~~~l~~~~~l~~la~~t----~g~s~~dL~~L~~~A~~~a~r~~ 426 (489)
T 3hu3_A 382 QIHTKNMKLADDVDLEQVANET----HGHVGADLAALCSEAALQAIRKK 426 (489)
T ss_dssp HHHTTTSCBCTTCCHHHHHHTC----TTCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhcCCCcchhhHHHHHHHc----cCCcHHHHHHHHHHHHHHHHHhc
Confidence 9998877654 23555555433 24566766777777766666543
No 23
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.96 E-value=8.2e-29 Score=224.44 Aligned_cols=184 Identities=17% Similarity=0.274 Sum_probs=141.5
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeeccccccccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeecccccCCCCC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG 134 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~~r~~ 134 (321)
.++||||||||||++|+++|++++.+|+.++++++.++|.|++++.++.+|..|... +||||||||||++.+.+.
T Consensus 56 ~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~-----~~~vl~iDEid~l~~~~~ 130 (297)
T 3b9p_A 56 GLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHM-----QPSIIFIDEVDSLLSERS 130 (297)
T ss_dssp EEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSSSSCSCHHHHHHHHHHHHHHT-----CSEEEEEETGGGTSBCC-
T ss_pred eEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhhcccchHHHHHHHHHHHHHHc-----CCcEEEeccHHHhccccc
Confidence 679999999999999999999999999999999999999999999999999999754 899999999999987654
Q ss_pred CCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccccCCCCCCCcceec--CCCHHHHHHHH
Q 020787 135 NTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYW--QPNLEDILNIV 212 (321)
Q Consensus 135 ~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpALlRpGRfDr~i~--~Pd~~~R~~Il 212 (321)
...... .+.+...|+..+|+.. ......++.||+|||+|+.||++++| ||++.++ .|+.++|..|+
T Consensus 131 ~~~~~~-~~~~~~~ll~~l~~~~---------~~~~~~~v~vi~~tn~~~~l~~~l~~--R~~~~i~~~~p~~~~r~~il 198 (297)
T 3b9p_A 131 SSEHEA-SRRLKTEFLVEFDGLP---------GNPDGDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPDEQTRELLL 198 (297)
T ss_dssp ----CC-SHHHHHHHHHHHHHCC---------------CEEEEEEESCGGGBCHHHHH--HCCEEEECCCCCHHHHHHHH
T ss_pred cCcchH-HHHHHHHHHHHHhccc---------ccCCCCcEEEEeecCChhhCCHHHHh--hCCeEEEeCCcCHHHHHHHH
Confidence 322222 2345567777777431 11112478999999999999999999 9998776 49999999999
Q ss_pred HHHhhcCC--CCHHHHHHhhhCCCCCcchhhHHHHHhHhHHHHHHHHHh
Q 020787 213 HRMYEKDG--ITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDD 259 (321)
Q Consensus 213 ~~~~~~~~--l~~~dl~~L~d~f~gq~idf~gAlra~~~d~~~~~~i~~ 259 (321)
+.++++.+ ++.+++..|+.... .|.|+....++..+....+.+
T Consensus 199 ~~~~~~~~~~~~~~~~~~la~~~~----g~~~~~l~~l~~~a~~~a~r~ 243 (297)
T 3b9p_A 199 NRLLQKQGSPLDTEALRRLAKITD----GYSGSDLTALAKDAALEPIRE 243 (297)
T ss_dssp HHHHGGGSCCSCHHHHHHHHHHTT----TCCHHHHHHHHHHHTTHHHHT
T ss_pred HHHHHhcCCCCCHHHHHHHHHHcC----CCCHHHHHHHHHHHHHHHHHH
Confidence 98887654 67777777776443 355555556666655444444
No 24
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.95 E-value=1.4e-28 Score=246.53 Aligned_cols=178 Identities=16% Similarity=0.217 Sum_probs=139.3
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeeccccccccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeecccccCCCCC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG 134 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~~r~~ 134 (321)
.++||||||||||++|+++|++++.+|+.++++++.++|.|++++.++.+|+.|.. ..||||||||||++.++++
T Consensus 66 GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~-----~~p~il~IDEId~l~~~r~ 140 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKR-----HAPCIVFIDEIDAVGRKRG 140 (499)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSS-----SSSCEEEEECGGGTCCCSS
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhhhhhHHHHHHHHHHHHHh-----cCCCEEEEehHHHHHHhhc
Confidence 38999999999999999999999999999999999999999999999999998863 3799999999999876554
Q ss_pred C-C-ccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccccCCCCCCCcceecC--CCHHHHHH
Q 020787 135 N-T-QMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQ--PNLEDILN 210 (321)
Q Consensus 135 ~-t-~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpALlRpGRfDr~i~~--Pd~~~R~~ 210 (321)
. . +.....+.+..+|++.||+- .....+.||+|||+|+.|||+|+||||||+.+.+ |+.++|.+
T Consensus 141 ~~~~~~~~e~~~~l~~LL~~Ldg~------------~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~ 208 (499)
T 2dhr_A 141 SGVGGGNDEREQTLNQLLVEMDGF------------EKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQ 208 (499)
T ss_dssp SSTTTSSHHHHHHHHHHHHHGGGC------------CSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHH
T ss_pred cCcCCCcHHHHHHHHHHHHHhccc------------ccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHH
Confidence 2 1 11112234445677777731 1134688999999999999999999999998875 99999999
Q ss_pred HHHHHhhcCCCC-HHHHHHhhhCCCCCcchhhHHHHHhHhHHHH
Q 020787 211 IVHRMYEKDGIT-KDEVGSIVKTFPNQALDFYGALRSRTYDRSI 253 (321)
Q Consensus 211 Il~~~~~~~~l~-~~dl~~L~d~f~gq~idf~gAlra~~~d~~~ 253 (321)
||+.++++.+++ ..++..++..++| |.||..+.++.+++
T Consensus 209 IL~~~~~~~~l~~dv~l~~lA~~t~G----~~gadL~~lv~~Aa 248 (499)
T 2dhr_A 209 ILRIHARGKPLAEDVDLALLAKRTPG----FVGADLENLLNEAA 248 (499)
T ss_dssp HHHHTTSSSCCCCSSTTHHHHTTSCS----CCHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCChHHHHHHHHHhcCC----CCHHHHHHHHHHHH
Confidence 999988776665 3456666665555 44444444444443
No 25
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.95 E-value=1e-27 Score=213.58 Aligned_cols=181 Identities=16% Similarity=0.196 Sum_probs=138.4
Q ss_pred hccccCCCCcHHHHHHHHHHHcCCceEEeeccccccccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeecccccCCCCCC
Q 020787 56 LCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGN 135 (321)
Q Consensus 56 LgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~~r~~~ 135 (321)
++||||||||||++++++|++++..++.+++.++.+.+.|+.++.++.+|..|... .||++||||||++.+++..
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-----~~~i~~~Deid~l~~~~~~ 126 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRH-----APCIVFIDEIDAVGRKRGS 126 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTS-----SSEEEEEETHHHHHC----
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhc-----CCeEEEehhhhhhhcccCc
Confidence 79999999999999999999999999999999999999999999999999998643 7999999999997765431
Q ss_pred -C-ccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccccCCCCCCCcceecC--CCHHHHHHH
Q 020787 136 -T-QMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQ--PNLEDILNI 211 (321)
Q Consensus 136 -t-~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpALlRpGRfDr~i~~--Pd~~~R~~I 211 (321)
. ......+.+..++++.+++- .....+.++++||+|+.|||+|+|+||||+.+.+ |+.++|.+|
T Consensus 127 ~~~~~~~~~~~~~~~ll~~l~g~------------~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~i 194 (254)
T 1ixz_A 127 GVGGGNDEREQTLNQLLVEMDGF------------EKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQI 194 (254)
T ss_dssp -----CHHHHHHHHHHHHHHHTC------------CTTCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHH
T ss_pred cccccchHHHHHHHHHHHHHhCC------------CCCCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHH
Confidence 1 11112234455677777631 1133577888999999999999999999998775 999999999
Q ss_pred HHHHhhcCCCC-HHHHHHhhhCCCCCcchhhHHHHHhHhHHHHHHHH
Q 020787 212 VHRMYEKDGIT-KDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWI 257 (321)
Q Consensus 212 l~~~~~~~~l~-~~dl~~L~d~f~gq~idf~gAlra~~~d~~~~~~i 257 (321)
++.+.++..++ ..++..++..++| |.|+....++.++....+
T Consensus 195 l~~~~~~~~~~~~~~~~~la~~~~G----~~~~dl~~~~~~a~~~a~ 237 (254)
T 1ixz_A 195 LRIHARGKPLAEDVDLALLAKRTPG----FVGADLENLLNEAALLAA 237 (254)
T ss_dssp HHHHHTTSCBCTTCCHHHHHHTCTT----CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCcccCHHHHHHHcCC----CCHHHHHHHHHHHHHHHH
Confidence 99888776654 3456677766654 455655556665554443
No 26
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.95 E-value=1.4e-27 Score=226.02 Aligned_cols=184 Identities=22% Similarity=0.300 Sum_probs=145.1
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeeccccccccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeecccccCCCCC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG 134 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~~r~~ 134 (321)
.++||||||||||++|+++|++++.+|+.++++++.++|.|++++.++.+|..|... +||||||||||++++.+.
T Consensus 119 ~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~~~g~~~~~~~~~~~~a~~~-----~~~vl~iDEid~l~~~~~ 193 (357)
T 3d8b_A 119 GILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQ-----QPAVIFIDEIDSLLSQRG 193 (357)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCCSSTTHHHHHHHHHHHHHHHT-----CSEEEEEETHHHHTBC--
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhccccchHHHHHHHHHHHHHhc-----CCeEEEEeCchhhhccCC
Confidence 678999999999999999999999999999999999999999999999999999754 899999999999987654
Q ss_pred CCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccccCCCCCCCcceec--CCCHHHHHHHH
Q 020787 135 NTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYW--QPNLEDILNIV 212 (321)
Q Consensus 135 ~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpALlRpGRfDr~i~--~Pd~~~R~~Il 212 (321)
..... ..+.+..+|+..+++.. . ....++.||+|||+++.||++|+| ||++.++ .|+.++|.+|+
T Consensus 194 ~~~~~-~~~~~~~~lL~~l~~~~---------~-~~~~~v~vI~atn~~~~l~~~l~~--Rf~~~i~i~~p~~~~r~~il 260 (357)
T 3d8b_A 194 DGEHE-SSRRIKTEFLVQLDGAT---------T-SSEDRILVVGATNRPQEIDEAARR--RLVKRLYIPLPEASARKQIV 260 (357)
T ss_dssp ----C-HHHHHHHHHHHHHHC--------------CCCCEEEEEEESCGGGBCHHHHT--TCCEEEECCCCCHHHHHHHH
T ss_pred CCcch-HHHHHHHHHHHHHhccc---------c-cCCCCEEEEEecCChhhCCHHHHh--hCceEEEeCCcCHHHHHHHH
Confidence 22222 24556677888887421 1 113579999999999999999999 9998766 49999999999
Q ss_pred HHHhhcCC--CCHHHHHHhhhCCCCCcchhhHHHHHhHhHHHHHHHHHhc
Q 020787 213 HRMYEKDG--ITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDI 260 (321)
Q Consensus 213 ~~~~~~~~--l~~~dl~~L~d~f~gq~idf~gAlra~~~d~~~~~~i~~~ 260 (321)
+.+++..+ ++.+++..|+.... .|.++....++..+....+.+.
T Consensus 261 ~~~~~~~~~~l~~~~l~~la~~t~----G~s~~dl~~l~~~a~~~~ir~l 306 (357)
T 3d8b_A 261 INLMSKEQCCLSEEEIEQIVQQSD----AFSGADMTQLCREASLGPIRSL 306 (357)
T ss_dssp HHHHHTSCBCCCHHHHHHHHHHTT----TCCHHHHHHHHHHHHTHHHHHC
T ss_pred HHHHhhcCCCccHHHHHHHHHHcC----CCCHHHHHHHHHHHHHHHHHHh
Confidence 99887654 67778888876544 3556666677776655555443
No 27
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.95 E-value=8.9e-28 Score=228.72 Aligned_cols=184 Identities=19% Similarity=0.270 Sum_probs=133.6
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeeccccccccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeecccccCCCCC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG 134 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~~r~~ 134 (321)
.++||||||||||++|+++|++++.+|+.++++++.++|.|++++.++.+|..|... +||||||||||.+++.+.
T Consensus 150 ~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~-----~~~il~iDEid~l~~~~~ 224 (389)
T 3vfd_A 150 GLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVAREL-----QPSIIFIDQVDSLLCERR 224 (389)
T ss_dssp EEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC-------CHHHHHHHHHHHHHS-----SSEEEEEETGGGGC----
T ss_pred eEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhhccccchHHHHHHHHHHHHHhc-----CCeEEEEECchhhcccCC
Confidence 689999999999999999999999999999999999999999999999999999865 899999999999886654
Q ss_pred CCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccccCCCCCCCcceecC--CCHHHHHHHH
Q 020787 135 NTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQ--PNLEDILNIV 212 (321)
Q Consensus 135 ~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpALlRpGRfDr~i~~--Pd~~~R~~Il 212 (321)
...... ...+...|+..+++. .. ....+|.||+|||+++.||++|+| ||++.+++ |+.++|.+|+
T Consensus 225 ~~~~~~-~~~~~~~ll~~l~~~---------~~-~~~~~v~vI~atn~~~~l~~~l~~--R~~~~i~i~~p~~~~r~~il 291 (389)
T 3vfd_A 225 EGEHDA-SRRLKTEFLIEFDGV---------QS-AGDDRVLVMGATNRPQELDEAVLR--RFIKRVYVSLPNEETRLLLL 291 (389)
T ss_dssp ----CT-HHHHHHHHHHHHHHH---------C------CEEEEEEESCGGGCCHHHHT--TCCEEEECCCCCHHHHHHHH
T ss_pred CccchH-HHHHHHHHHHHhhcc---------cc-cCCCCEEEEEecCCchhcCHHHHc--CcceEEEcCCcCHHHHHHHH
Confidence 222222 345666787777731 11 113579999999999999999999 99986664 9999999999
Q ss_pred HHHhhcCC--CCHHHHHHhhhCCCCCcchhhHHHHHhHhHHHHHHHHHhc
Q 020787 213 HRMYEKDG--ITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDI 260 (321)
Q Consensus 213 ~~~~~~~~--l~~~dl~~L~d~f~gq~idf~gAlra~~~d~~~~~~i~~~ 260 (321)
+.++...+ ++.+++..|+....| |.++....++..+....+.+.
T Consensus 292 ~~~~~~~~~~l~~~~~~~la~~~~g----~~~~~l~~L~~~a~~~~~rel 337 (389)
T 3vfd_A 292 KNLLCKQGSPLTQKELAQLARMTDG----YSGSDLTALAKDAALGPIREL 337 (389)
T ss_dssp HHHHTTSCCCSCHHHHHHHHHHTTT----CCHHHHHHHHHHHTTHHHHTS
T ss_pred HHHHHhcCCCCCHHHHHHHHHHcCC----CCHHHHHHHHHHHHHHHHHhh
Confidence 98887654 677777777765544 455555556665544444443
No 28
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.95 E-value=1.4e-28 Score=219.91 Aligned_cols=178 Identities=15% Similarity=0.177 Sum_probs=131.2
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeeccccccccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeecccccCCCCC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG 134 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~~r~~ 134 (321)
.++||||||||||++|+++|++++.+++.++++++.+.|.|++++.++.+|+.|... +||||||||||.+.+.+.
T Consensus 46 ~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~a~~~-----~~~vl~iDEid~l~~~~~ 120 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQ-----APSIIFIDEIDAIGKSRA 120 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTTSCSSSCSSSSSTTHHHHHHS-----CSCEEEESCGGGTTC---
T ss_pred eEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHHhhcchHHHHHHHHHHHHHhc-----CCeEEEEeChhhhccccc
Confidence 478999999999999999999999999999999999999999999999999999754 799999999999886542
Q ss_pred CCc---cchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccccCCCCCCCcceecC--CCHHHHH
Q 020787 135 NTQ---MTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQ--PNLEDIL 209 (321)
Q Consensus 135 ~t~---~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpALlRpGRfDr~i~~--Pd~~~R~ 209 (321)
..+ .....+.+...|++.+++.. . ...++.||+|||+++.||++++|+|||+..+.+ |+.++|.
T Consensus 121 ~~~~~~~~~~~~~~~~~ll~~l~~~~---------~--~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~ 189 (268)
T 2r62_A 121 AGGVVSGNDEREQTLNQLLAEMDGFG---------S--ENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRV 189 (268)
T ss_dssp -------CCCSCSSTTTTTTTTTCSS---------C--SCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHH
T ss_pred ccccCCCchhHHHHHHHHHHHhhCcc---------c--CCCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHH
Confidence 110 01111223345666666321 1 134689999999999999999999999987764 9999999
Q ss_pred HHHHHHhhcCCCC-HHHHHHhhhCCCCCcchhhHHHHHhHhHHH
Q 020787 210 NIVHRMYEKDGIT-KDEVGSIVKTFPNQALDFYGALRSRTYDRS 252 (321)
Q Consensus 210 ~Il~~~~~~~~l~-~~dl~~L~d~f~gq~idf~gAlra~~~d~~ 252 (321)
+|++.+++..++. ..++..++.... +|.|+....++..+
T Consensus 190 ~il~~~~~~~~~~~~~~~~~la~~~~----g~~g~dl~~l~~~a 229 (268)
T 2r62_A 190 EILKVHIKGVKLANDVNLQEVAKLTA----GLAGADLANIINEA 229 (268)
T ss_dssp HHHHHHTSSSCCCSSCCTTTTTSSSC----SSCHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCccCHHHHHHHcC----CCCHHHHHHHHHHH
Confidence 9999888776543 233444443222 34444444444444
No 29
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.94 E-value=3e-26 Score=207.94 Aligned_cols=180 Identities=16% Similarity=0.199 Sum_probs=137.1
Q ss_pred hccccCCCCcHHHHHHHHHHHcCCceEEeeccccccccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeecccccCCCCCC
Q 020787 56 LCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGN 135 (321)
Q Consensus 56 LgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~~r~~~ 135 (321)
++||||||||||++++++|+.++..++.+++.++.+.+.|+.++.++.+|..|... .||++||||||++..++..
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-----~~~i~~iDeid~l~~~~~~ 150 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRH-----APCIVFIDEIDAVGRKRGS 150 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTS-----CSEEEEEETHHHHHCC---
T ss_pred EEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhc-----CCcEEehhhhHhhhccccc
Confidence 79999999999999999999999999999999999999999999999999998744 7999999999997654431
Q ss_pred -C-ccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccccCCCCCCCcceecC--CCHHHHHHH
Q 020787 136 -T-QMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQ--PNLEDILNI 211 (321)
Q Consensus 136 -t-~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpALlRpGRfDr~i~~--Pd~~~R~~I 211 (321)
. ......+....++++.+++- .....+.++++||+|+.|||+|+|+||||+.+.+ |+.++|.+|
T Consensus 151 ~~~~~~~~~~~~~~~ll~~lsgg------------~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~i 218 (278)
T 1iy2_A 151 GVGGGNDEREQTLNQLLVEMDGF------------EKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQI 218 (278)
T ss_dssp -----CHHHHHHHHHHHHHHTTC------------CTTCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHH
T ss_pred ccCCcchHHHHHHHHHHHHHhCC------------CCCCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHH
Confidence 1 11112234445677766631 1133577888999999999999999999998764 999999999
Q ss_pred HHHHhhcCCCCH-HHHHHhhhCCCCCcchhhHHHHHhHhHHHHHHH
Q 020787 212 VHRMYEKDGITK-DEVGSIVKTFPNQALDFYGALRSRTYDRSISKW 256 (321)
Q Consensus 212 l~~~~~~~~l~~-~dl~~L~d~f~gq~idf~gAlra~~~d~~~~~~ 256 (321)
++.+.+...++. .++..++..++| |.|+....++..++...
T Consensus 219 l~~~~~~~~~~~~~~~~~la~~~~G----~~~~dl~~l~~~a~~~a 260 (278)
T 1iy2_A 219 LRIHARGKPLAEDVDLALLAKRTPG----FVGADLENLLNEAALLA 260 (278)
T ss_dssp HHHHHTTSCBCTTCCHHHHHHTCTT----CCHHHHHHHHHHHHHHH
T ss_pred HHHHHccCCCCcccCHHHHHHHcCC----CCHHHHHHHHHHHHHHH
Confidence 998887766543 456677766655 44554455555554433
No 30
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.93 E-value=3.3e-25 Score=231.92 Aligned_cols=159 Identities=19% Similarity=0.288 Sum_probs=134.8
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeeccccccccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeecccccCCCCC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG 134 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~~r~~ 134 (321)
.++||||||||||++|+++|++++.+++.++++++.++|.|++++.++.+|..|... .||+|||||||++++.++
T Consensus 240 ~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~-----~p~il~iDEid~l~~~~~ 314 (806)
T 1ypw_A 240 GILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN-----APAIIFIDELDAIAPKRE 314 (806)
T ss_dssp EEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSSSSTTHHHHHHHHHHHHHHHH-----CSEEEEEESGGGTSCTTS
T ss_pred eEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhhhhhhhHHHHHHHHHHHHHhc-----CCcEEEeccHHHhhhccc
Confidence 589999999999999999999999999999999999999999999999999999855 799999999999998776
Q ss_pred CCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccccCCCCCCCcceec--CCCHHHHHHHH
Q 020787 135 NTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYW--QPNLEDILNIV 212 (321)
Q Consensus 135 ~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpALlRpGRfDr~i~--~Pd~~~R~~Il 212 (321)
..+... .+.+..+|++++++. . ...++.||+|||+++.||++|+|+|||++.+. +|+.++|.+|+
T Consensus 315 ~~~~~~-~~~~~~~Ll~ll~g~---------~---~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il 381 (806)
T 1ypw_A 315 KTHGEV-ERRIVSQLLTLMDGL---------K---QRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEIL 381 (806)
T ss_dssp CCCSHH-HHHHHHHHHHHHHSS---------C---TTSCCEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHH
T ss_pred cccchH-HHHHHHHHHHHhhhh---------c---ccccEEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHH
Confidence 444333 456778899998842 1 13578999999999999999999999999776 59999999999
Q ss_pred HHHhhcCCCC-HHHHHHhhh
Q 020787 213 HRMYEKDGIT-KDEVGSIVK 231 (321)
Q Consensus 213 ~~~~~~~~l~-~~dl~~L~d 231 (321)
+.++++..+. ..++..++.
T Consensus 382 ~~~~~~~~l~~~~~l~~la~ 401 (806)
T 1ypw_A 382 QIHTKNMKLADDVDLEQVAN 401 (806)
T ss_dssp HHTTTTSCCCTTCCTHHHHH
T ss_pred HHHHhcCCCcccchhHHHHH
Confidence 9888776543 234444544
No 31
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.93 E-value=4.9e-28 Score=236.37 Aligned_cols=162 Identities=11% Similarity=0.062 Sum_probs=111.0
Q ss_pred HhccccCCCCcHHHHHHHHHHHcC--CceEEeeccccccccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeecccccCCC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMG--IEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGR 132 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g--~~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~~r 132 (321)
.++||||||||||++|+++|++++ ++|+.++++++.++|+|++++ +++.|+.|... ...+||||||||||+++++
T Consensus 65 ~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~f~~a~~~--~~~~~~il~iDEid~l~~~ 141 (456)
T 2c9o_A 65 AVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTEV-LMENFRRAIGL--RIKETKEVYEGEVTELTPC 141 (456)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCCSSSCHHHH-HHHHHHHTEEE--EEEEEEEEEEEEEEEEEEC
T ss_pred eEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHHHhhhhhHH-HHHHHHHHHhh--hhcCCcEEEEechhhcccc
Confidence 478999999999999999999999 999999999999999999998 99999999321 0348999999999999977
Q ss_pred CCCCccchhhHH------------------HHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccccCCCCC
Q 020787 133 FGNTQMTVNNQI------------------VVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDG 194 (321)
Q Consensus 133 ~~~t~~~v~~q~------------------V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpALlRpG 194 (321)
++........+. +..++|..++.. .......+.|++|||+++.+|++++|||
T Consensus 142 r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~----------~~~~~~~v~i~attn~~~~ld~a~~r~~ 211 (456)
T 2c9o_A 142 ETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQKE----------RVEAGDVIYIEANSGAVKRQGRCDTYAT 211 (456)
T ss_dssp --------------CEEEEEEETTEEEEEEECHHHHHHHHHT----------TCCTTEEEEEETTTCCEEEEEEETTSCC
T ss_pred cCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHHHhhc----------cCCCCCEEEEEcCCCCcccCChhhcCCc
Confidence 653211100111 111233332210 0111224566689999999999999999
Q ss_pred CCcc--eecC--C--CHHHHHHHHHHHhhcCCCCHHHHHHhhhCCCC
Q 020787 195 RMEK--FYWQ--P--NLEDILNIVHRMYEKDGITKDEVGSIVKTFPN 235 (321)
Q Consensus 195 RfDr--~i~~--P--d~~~R~~Il~~~~~~~~l~~~dl~~L~d~f~g 235 (321)
|||+ .+++ | +.++|.+|++.++. .|+..++....|
T Consensus 212 rfd~~~~~~v~~p~~~~~~R~~il~~~~~------~dl~~~a~~t~g 252 (456)
T 2c9o_A 212 EFDLEAEEYVPLPKGDVHKKKEIIQDVTL------HDLDVANARPQG 252 (456)
T ss_dssp TTSCSSSSEECCCCSCSEEEEEEEEEEEH------HHHHHTC-----
T ss_pred ccCcceeEecCCCchhHHHHHHHHHHHHH------HHHHHHHHhCCC
Confidence 9999 3333 5 34779988875553 366666665554
No 32
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.87 E-value=2.9e-22 Score=180.45 Aligned_cols=159 Identities=14% Similarity=0.184 Sum_probs=122.8
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeeccccccccCCCcH----HHHHHHHHHHHhhhhhcCCceEEEeecccccC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPG----KLIRERYRTASQVVQNQGKMSCLMINDIDAGL 130 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~~~GEse----r~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~ 130 (321)
.++||||||||||++|+++|++++.+|+.+++++ .+.|.++ ..++++|+.|.. ..|+||||||||.++
T Consensus 66 ~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~---~~~g~~~~~~~~~~~~~~~~~~~-----~~~~vl~iDEid~l~ 137 (272)
T 1d2n_A 66 SVLLEGPPHSGKTALAAKIAEESNFPFIKICSPD---KMIGFSETAKCQAMKKIFDDAYK-----SQLSCVVVDDIERLL 137 (272)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGG---GCTTCCHHHHHHHHHHHHHHHHT-----SSEEEEEECCHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHH---HhcCCchHHHHHHHHHHHHHHHh-----cCCcEEEEEChhhhh
Confidence 5889999999999999999999999999998876 4566655 678889988863 479999999999987
Q ss_pred CCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccccCCCCCCCcceecCCCHHHHHH
Q 020787 131 GRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILN 210 (321)
Q Consensus 131 ~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpALlRpGRfDr~i~~Pd~~~R~~ 210 (321)
+++.... .. ...+...|..++++. .+...++.||+|||+++.|+++.++ +||+..+.+|+..+|.+
T Consensus 138 ~~~~~~~-~~-~~~~l~~L~~~~~~~-----------~~~~~~~~ii~ttn~~~~l~~~~l~-~rf~~~i~~p~l~~r~~ 203 (272)
T 1d2n_A 138 DYVPIGP-RF-SNLVLQALLVLLKKA-----------PPQGRKLLIIGTTSRKDVLQEMEML-NAFSTTIHVPNIATGEQ 203 (272)
T ss_dssp TCBTTTT-BC-CHHHHHHHHHHTTCC-----------CSTTCEEEEEEEESCHHHHHHTTCT-TTSSEEEECCCEEEHHH
T ss_pred ccCCCCh-hH-HHHHHHHHHHHhcCc-----------cCCCCCEEEEEecCChhhcchhhhh-cccceEEcCCCccHHHH
Confidence 6654222 11 234556677776631 0113468899999999999985443 59999999999988888
Q ss_pred HHHHHhhcCCCCHHHHHHhhhCCCC
Q 020787 211 IVHRMYEKDGITKDEVGSIVKTFPN 235 (321)
Q Consensus 211 Il~~~~~~~~l~~~dl~~L~d~f~g 235 (321)
|.+.+.+...++.+++..++....|
T Consensus 204 i~~i~~~~~~~~~~~~~~l~~~~~g 228 (272)
T 1d2n_A 204 LLEALELLGNFKDKERTTIAQQVKG 228 (272)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHTT
T ss_pred HHHHHHhcCCCCHHHHHHHHHHhcC
Confidence 8887777677888888888876655
No 33
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.85 E-value=2.2e-22 Score=199.66 Aligned_cols=131 Identities=13% Similarity=0.075 Sum_probs=58.6
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeecccccc-ccCCC-cHHHHHHHHHHHHhhhhhcCCceEEEeecccccCCC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELES-ERAGE-PGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGR 132 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s-~~~GE-ser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~~r 132 (321)
.++|+||||||||++|+++|++++++|+.++++++.+ +|+|+ +++.+|++|..|...+ ++||+|+....
T Consensus 52 ~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~d~e~~lr~lf~~a~~~~---------~~De~d~~~~~ 122 (444)
T 1g41_A 52 NILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKLV---------RQQEIAKNRAR 122 (444)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCCCTHHHHHHHHHHHHHHH---------HHHHHHSCC--
T ss_pred eEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeeccHHHHHHHHHHHHHhcc---------hhhhhhhhhcc
Confidence 5789999999999999999999999999999999999 59995 8999999999998652 48999986543
Q ss_pred CCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEe-eCCCCCccccCCCCCCCcceecC--CCHH-HH
Q 020787 133 FGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFT-GNDFSTIYAPLIRDGRMEKFYWQ--PNLE-DI 208 (321)
Q Consensus 133 ~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaa-TNrp~~LDpALlRpGRfDr~i~~--Pd~~-~R 208 (321)
.. ... .+++..+|++.||+. .+ ...| +++ ||+|+.|||||+||||||+.|++ |+.. .|
T Consensus 123 ~~---~~~-e~rvl~~LL~~~dg~---------~~---~~~v--~a~~TN~~~~ld~aL~rggr~D~~i~i~lP~~~~~~ 184 (444)
T 1g41_A 123 AE---DVA-EERILDALLPPAKNQ---------WG---EVEN--HDSHSSTRQAFRKKLREGQLDDKEIEIDVSAGVSMG 184 (444)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ch---hhH-HHHHHHHHHHHhhcc---------cc---cccc--ccccccCHHHHHHHHHcCCCcceEEEEcCCCCccch
Confidence 22 122 356778899888852 11 1233 555 99999999999999999998885 7776 78
Q ss_pred HHHH
Q 020787 209 LNIV 212 (321)
Q Consensus 209 ~~Il 212 (321)
.+|+
T Consensus 185 ~ei~ 188 (444)
T 1g41_A 185 VEIM 188 (444)
T ss_dssp ----
T ss_pred hhhh
Confidence 8886
No 34
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.85 E-value=1.4e-21 Score=177.16 Aligned_cols=150 Identities=14% Similarity=0.166 Sum_probs=120.0
Q ss_pred HhccccCCCCcHHHHHHHHHHHc-------CCceEEeeccccccccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeeccc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM-------GIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDID 127 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~-------g~~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDEID 127 (321)
.++||||||||||++|+++|+++ ..+++.++++++.++|.|++++.++++|+.| .++||||||||
T Consensus 69 ~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~--------~~~vl~iDEid 140 (309)
T 3syl_A 69 HMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLKRA--------MGGVLFIDEAY 140 (309)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTCCSSTTCHHHHHHHHHHHH--------TTSEEEEETGG
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhhhhcccccHHHHHHHHHhc--------CCCEEEEEChh
Confidence 48999999999999999999998 4489999999999999999999999999887 47899999999
Q ss_pred ccCCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCC-----CccccCCCCCCCcceecC
Q 020787 128 AGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFS-----TIYAPLIRDGRMEKFYWQ 202 (321)
Q Consensus 128 Ag~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~-----~LDpALlRpGRfDr~i~~ 202 (321)
.+++.+..... .+.+...|++++++. ..++.||+|||.++ .++|+|++ ||+..+.+
T Consensus 141 ~l~~~~~~~~~---~~~~~~~Ll~~l~~~--------------~~~~~~i~~~~~~~~~~~~~~~~~l~~--R~~~~i~~ 201 (309)
T 3syl_A 141 YLYRPDNERDY---GQEAIEILLQVMENN--------------RDDLVVILAGYADRMENFFQSNPGFRS--RIAHHIEF 201 (309)
T ss_dssp GSCCCC---CC---THHHHHHHHHHHHHC--------------TTTCEEEEEECHHHHHHHHHHSTTHHH--HEEEEEEE
T ss_pred hhccCCCcccc---cHHHHHHHHHHHhcC--------------CCCEEEEEeCChHHHHHHHhhCHHHHH--hCCeEEEc
Confidence 98865432221 245666788888731 34788999998764 35799998 99876654
Q ss_pred --CCHHHHHHHHHHHhhcCC--CCHHHHHHhhh
Q 020787 203 --PNLEDILNIVHRMYEKDG--ITKDEVGSIVK 231 (321)
Q Consensus 203 --Pd~~~R~~Il~~~~~~~~--l~~~dl~~L~d 231 (321)
|+.+++..|++.+++..+ ++.+.+..+++
T Consensus 202 ~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~ 234 (309)
T 3syl_A 202 PDYSDEELFEIAGHMLDDQNYQMTPEAETALRA 234 (309)
T ss_dssp CCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 899999999998888655 56666666654
No 35
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.82 E-value=2.5e-20 Score=167.33 Aligned_cols=153 Identities=16% Similarity=0.142 Sum_probs=113.2
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeecccccc-ccCCC-cHHHHHHHHHHHHhhhhhcCCceEEEeecccccCCC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELES-ERAGE-PGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGR 132 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s-~~~GE-ser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~~r 132 (321)
.++||||||||||++|+++|+.++.+++.++++++.+ .|+|. .+..++++|..+....+..+.++||||||||...+.
T Consensus 52 ~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~ 131 (310)
T 1ofh_A 52 NILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKK 131 (310)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCC
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCccHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCcc
Confidence 5789999999999999999999999999999999987 68775 467788888754211111125899999999998876
Q ss_pred CCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEe----eCCCCCccccCCCCCCCcceecC--CCHH
Q 020787 133 FGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFT----GNDFSTIYAPLIRDGRMEKFYWQ--PNLE 206 (321)
Q Consensus 133 ~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaa----TNrp~~LDpALlRpGRfDr~i~~--Pd~~ 206 (321)
..+.+.+...+.+...|+.++++.....-.+ ..+ ..++.+|+| +|.++.++|+|++ ||+..+.+ |+.+
T Consensus 132 ~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~---~~~-~~~~~~i~~~~~~~~~~~~l~~~l~~--R~~~~i~~~~~~~~ 205 (310)
T 1ofh_A 132 GEYSGADVSREGVQRDLLPLVEGSTVSTKHG---MVK-TDHILFIASGAFQVARPSDLIPELQG--RLPIRVELTALSAA 205 (310)
T ss_dssp SSCCSSHHHHHHHHHHHHHHHHCCEEEETTE---EEE-CTTCEEEEEECCSSSCGGGSCHHHHH--TCCEEEECCCCCHH
T ss_pred ccccccchhHHHHHHHHHHHhcCCeEecccc---ccc-CCcEEEEEcCCcccCCcccCCHHHHh--hCCceEEcCCcCHH
Confidence 5433334444556778888888532111111 111 357888888 5688999999996 99975654 7999
Q ss_pred HHHHHHH
Q 020787 207 DILNIVH 213 (321)
Q Consensus 207 ~R~~Il~ 213 (321)
++.+|++
T Consensus 206 ~~~~il~ 212 (310)
T 1ofh_A 206 DFERILT 212 (310)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999998
No 36
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.81 E-value=3.2e-20 Score=186.25 Aligned_cols=188 Identities=18% Similarity=0.254 Sum_probs=119.3
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeecccccc---------ccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeec
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELES---------ERAGEPGKLIRERYRTASQVVQNQGKMSCLMIND 125 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s---------~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDE 125 (321)
+++|+||||||||++|+++|+.++.+++.++.+.+.+ +|+|..+..+++.|..|... .| ||||||
T Consensus 110 ~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~~~~~ig~~~~~~~~~~~~a~~~-----~~-vl~lDE 183 (543)
T 3m6a_A 110 ILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAMPGRIIQGMKKAGKL-----NP-VFLLDE 183 (543)
T ss_dssp EEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC--------------------CHHHHHHTTCSS-----SE-EEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhHHHHHhccCchHHHHHHHHhhcc-----CC-EEEEhh
Confidence 6899999999999999999999999999999887655 78999999999999887532 45 999999
Q ss_pred ccccCCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCC-CCCccEEEeeCCCCCccccCCCCCCCcceec-CC
Q 020787 126 IDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDI-TNRIPIIFTGNDFSTIYAPLIRDGRMEKFYW-QP 203 (321)
Q Consensus 126 IDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~-~~~V~VIaaTNrp~~LDpALlRpGRfDr~i~-~P 203 (321)
||...+.+.+ .+...|+..+|....-.....+..... ..++.||+|||+++.|+|||+| ||+...+ .|
T Consensus 184 id~l~~~~~~--------~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN~~~~l~~aL~~--R~~vi~~~~~ 253 (543)
T 3m6a_A 184 IDKMSSDFRG--------DPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANNLATIPGPLRD--RMEIINIAGY 253 (543)
T ss_dssp SSSCC-----------------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECSSTTTSCHHHHH--HEEEEECCCC
T ss_pred hhhhhhhhcc--------CHHHHHHHHHhhhhcceeecccCCeeecccceEEEeccCccccCCHHHHh--hcceeeeCCC
Confidence 9998764321 133467788874321111000111110 2578899999999999999999 9975333 38
Q ss_pred CHHHHHHHHHHHhhc------------CCCCHHHHHHhhhCCCCC-cchhhHHHHHhHhHHHHHHHHH
Q 020787 204 NLEDILNIVHRMYEK------------DGITKDEVGSIVKTFPNQ-ALDFYGALRSRTYDRSISKWID 258 (321)
Q Consensus 204 d~~~R~~Il~~~~~~------------~~l~~~dl~~L~d~f~gq-~idf~gAlra~~~d~~~~~~i~ 258 (321)
+.++|..|++.++.. ..++.+.+..|+..|++. .+.-.-+.-.+++..+....+.
T Consensus 254 ~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~~~~~~~vR~L~~~i~~~~~~aa~~~~~ 321 (543)
T 3m6a_A 254 TEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRYYTREAGVRSLERQLAAICRKAAKAIVA 321 (543)
T ss_dssp CHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHHHCCCSSSHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHhCChhhchhHHHHHHHHHHHHHHHHHHh
Confidence 999999999876521 135678888888877652 1222223334444444444444
No 37
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.80 E-value=2.8e-20 Score=174.97 Aligned_cols=100 Identities=19% Similarity=0.283 Sum_probs=79.3
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeeccccccc-cCCCc-HHHHHHHHHHHHhhhhhcCCceEEEeecccccCCC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESE-RAGEP-GKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGR 132 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~-~~GEs-er~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~~r 132 (321)
.++||||||||||++|+++|+.++.+|+.++++++... |.|+. ++.++++|+.+.-... +..||||||||||++.+.
T Consensus 53 ~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~vl~lDEid~l~~~ 131 (363)
T 3hws_A 53 NILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ-KAQRGIVYIDQIDKISRK 131 (363)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHHHHTHHHHHHHHHTTTCHH-HHHHCEEEEECHHHHCCC
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhcccccccccHHHHHHHHHHHhhhhHH-hcCCcEEEEeChhhhccc
Confidence 67899999999999999999999999999999999865 99987 7888999987722111 226999999999998765
Q ss_pred CC--CCccchhhHHHHHHHHhhcCC
Q 020787 133 FG--NTQMTVNNQIVVGTLMNLSDN 155 (321)
Q Consensus 133 ~~--~t~~~v~~q~V~~tLl~llD~ 155 (321)
++ +.+..+..+.++..|+.+||+
T Consensus 132 ~~~~~~~~~~~~~~~~~~Ll~~leg 156 (363)
T 3hws_A 132 SDNPSITRDVSGEGVQQALLKLIEG 156 (363)
T ss_dssp SSCC---CHHHHHHHHHHHHHHHHC
T ss_pred ccccccccccchHHHHHHHHHHhcC
Confidence 54 223344445688899999984
No 38
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.77 E-value=1.1e-18 Score=160.69 Aligned_cols=155 Identities=14% Similarity=0.053 Sum_probs=111.1
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeeccccccccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeecccccCCCCC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG 134 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~~r~~ 134 (321)
.++||||||||||++|+++|++++.+|+.++++.+. ....++..+.. ...+++|||||||...+
T Consensus 57 ~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~------~~~~~~~~~~~-------~~~~~vl~lDEi~~l~~--- 120 (338)
T 3pfi_A 57 HILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIE------KSGDLAAILTN-------LSEGDILFIDEIHRLSP--- 120 (338)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCC------SHHHHHHHHHT-------CCTTCEEEEETGGGCCH---
T ss_pred eEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhcc------chhHHHHHHHh-------ccCCCEEEEechhhcCH---
Confidence 478999999999999999999999999999998764 23344444432 24799999999998752
Q ss_pred CCccchhhHHHHHHHHhhcCCCCccccCcc-ccccC---CCCCccEEEeeCCCCCccccCCCCCCCcceecC--CCHHHH
Q 020787 135 NTQMTVNNQIVVGTLMNLSDNPTRVSIGQD-WRESD---ITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQ--PNLEDI 208 (321)
Q Consensus 135 ~t~~~v~~q~V~~tLl~llD~~~~vql~g~-~~~~~---~~~~V~VIaaTNrp~~LDpALlRpGRfDr~i~~--Pd~~~R 208 (321)
.+...|+..+++....-+.+. ..... ..+++.+|+|||++..++|+|++ ||+..+.+ |+.+++
T Consensus 121 ---------~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~~--R~~~~i~l~~~~~~e~ 189 (338)
T 3pfi_A 121 ---------AIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRD--RFGMQFRLEFYKDSEL 189 (338)
T ss_dssp ---------HHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHH
T ss_pred ---------HHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCCCccccCHHHHh--hcCEEeeCCCcCHHHH
Confidence 233455556553211111110 00000 02257899999999999999998 99876654 899999
Q ss_pred HHHHHHHhhcCC--CCHHHHHHhhhCCCCC
Q 020787 209 LNIVHRMYEKDG--ITKDEVGSIVKTFPNQ 236 (321)
Q Consensus 209 ~~Il~~~~~~~~--l~~~dl~~L~d~f~gq 236 (321)
..|++.+....+ ++.+.+..|+..++|-
T Consensus 190 ~~il~~~~~~~~~~~~~~~~~~l~~~~~G~ 219 (338)
T 3pfi_A 190 ALILQKAALKLNKTCEEKAALEIAKRSRST 219 (338)
T ss_dssp HHHHHHHHHHTTCEECHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHCcC
Confidence 999998887665 5778888888877764
No 39
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.76 E-value=1.6e-19 Score=148.18 Aligned_cols=132 Identities=19% Similarity=0.210 Sum_probs=99.2
Q ss_pred HhccccCCCCcHHHHHHHHHHHc----------CCceEEeeccccc--cccCCCcHHHHHHHHHHHHhhhhhcCCceEEE
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM----------GIEPVIMSAGELE--SERAGEPGKLIRERYRTASQVVQNQGKMSCLM 122 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~----------g~~~i~vs~~eL~--s~~~GEser~IR~~F~~A~~~~~~~gaPcILF 122 (321)
.++|+||||||||++|+++++++ +.+++.++.+++. .++.|+.++.++++|..+.. .+.|+|||
T Consensus 45 ~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~vl~ 120 (195)
T 1jbk_A 45 NPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAK----QEGNVILF 120 (195)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHTTTCSHHHHHHHHHHHHHHHHH----STTTEEEE
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHHhccCCccccHHHHHHHHHHHHhh----cCCCeEEE
Confidence 46899999999999999999997 8899999998887 56778888899999987753 35799999
Q ss_pred eecccccCCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCC-----CccccCCCCCCCc
Q 020787 123 INDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFS-----TIYAPLIRDGRME 197 (321)
Q Consensus 123 IDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~-----~LDpALlRpGRfD 197 (321)
|||+|.+.+..+.... ..+...|..+++ ..++.+|+|||.++ .++++|++ ||+
T Consensus 121 iDe~~~l~~~~~~~~~----~~~~~~l~~~~~----------------~~~~~~i~~~~~~~~~~~~~~~~~l~~--r~~ 178 (195)
T 1jbk_A 121 IDELHTMVGAGKADGA----MDAGNMLKPALA----------------RGELHCVGATTLDEYRQYIEKDAALER--RFQ 178 (195)
T ss_dssp EETGGGGTT------C----CCCHHHHHHHHH----------------TTSCCEEEEECHHHHHHHTTTCHHHHT--TEE
T ss_pred EeCHHHHhccCcccch----HHHHHHHHHhhc----------------cCCeEEEEeCCHHHHHHHHhcCHHHHH--Hhc
Confidence 9999998754321110 112223333333 23688999999987 78999999 998
Q ss_pred ceec-CCCHHHHHHHH
Q 020787 198 KFYW-QPNLEDILNIV 212 (321)
Q Consensus 198 r~i~-~Pd~~~R~~Il 212 (321)
.... .|+.++|.+||
T Consensus 179 ~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 179 KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp EEECCCCCHHHHHTTC
T ss_pred eeecCCCCHHHHHHHh
Confidence 5332 48999999876
No 40
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.75 E-value=2e-18 Score=159.99 Aligned_cols=149 Identities=16% Similarity=0.147 Sum_probs=105.3
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCC--ceEEeeccccccccCCC------------------------------------
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGI--EPVIMSAGELESERAGE------------------------------------ 96 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~--~~i~vs~~eL~s~~~GE------------------------------------ 96 (321)
.++||||||||||++|+++|++++. +++.++++++.+.+.++
T Consensus 72 ~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~ 151 (368)
T 3uk6_A 72 AVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRT 151 (368)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSCSSSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC--
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhhcccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhccc
Confidence 6899999999999999999999986 88899988866555444
Q ss_pred -------------cHHHHHHHHHHHHhhhhhcC----CceEEEeecccccCCCCCCCccchhhHHHHHHHHhhcCCCCcc
Q 020787 97 -------------PGKLIRERYRTASQVVQNQG----KMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRV 159 (321)
Q Consensus 97 -------------ser~IR~~F~~A~~~~~~~g----aPcILFIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~v 159 (321)
....+|+.|..+.......+ +|+||||||||.+.. .....|+..++.+
T Consensus 152 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~~l~~------------~~~~~L~~~le~~--- 216 (368)
T 3uk6_A 152 QGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHMLDI------------ESFSFLNRALESD--- 216 (368)
T ss_dssp --CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGGGSBH------------HHHHHHHHHTTCT---
T ss_pred ccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhccccCh------------HHHHHHHHHhhCc---
Confidence 45566777776655332223 389999999998742 2334566665532
Q ss_pred ccCccccccCCCCCccEEEee------------CCCCCccccCCCCCCCcceec-CCCHHHHHHHHHHHhhcC--CCCHH
Q 020787 160 SIGQDWRESDITNRIPIIFTG------------NDFSTIYAPLIRDGRMEKFYW-QPNLEDILNIVHRMYEKD--GITKD 224 (321)
Q Consensus 160 ql~g~~~~~~~~~~V~VIaaT------------Nrp~~LDpALlRpGRfDr~i~-~Pd~~~R~~Il~~~~~~~--~l~~~ 224 (321)
...+ +|++| |.+..|+++|++ ||....+ .|+.+++.+|++..+... .++.+
T Consensus 217 -----------~~~~-~ii~t~~~~~~i~~t~~~~~~~l~~~l~s--R~~~i~~~~~~~~e~~~il~~~~~~~~~~~~~~ 282 (368)
T 3uk6_A 217 -----------MAPV-LIMATNRGITRIRGTSYQSPHGIPIDLLD--RLLIVSTTPYSEKDTKQILRIRCEEEDVEMSED 282 (368)
T ss_dssp -----------TCCE-EEEEESCSEEECBTSSCEEETTCCHHHHT--TEEEEEECCCCHHHHHHHHHHHHHHTTCCBCHH
T ss_pred -----------CCCe-eeeecccceeeeeccCCCCcccCCHHHHh--hccEEEecCCCHHHHHHHHHHHHHHcCCCCCHH
Confidence 1123 23333 458899999999 8877433 479999999999877754 46777
Q ss_pred HHHHhhhC
Q 020787 225 EVGSIVKT 232 (321)
Q Consensus 225 dl~~L~d~ 232 (321)
.+..|+..
T Consensus 283 ~l~~l~~~ 290 (368)
T 3uk6_A 283 AYTVLTRI 290 (368)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77777643
No 41
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.70 E-value=8.1e-18 Score=158.59 Aligned_cols=139 Identities=19% Similarity=0.255 Sum_probs=84.9
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeeccccc-cccCCCc-HHHHHHHHHHHHhhhhhcCCceEEEeecccccCCC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELE-SERAGEP-GKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGR 132 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~-s~~~GEs-er~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~~r 132 (321)
.++||||||||||++|+++|+.++.+|+.++++++. ++|.|+. +..++..|..+..... +..++||||||||.+.+.
T Consensus 74 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~vl~iDEi~~l~~~ 152 (376)
T 1um8_A 74 NILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQ-KAQKGIVFIDEIDKISRL 152 (376)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGCC--------CTHHHHHHHHHTTTCHH-HHTTSEEEEETGGGC---
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCCEEEecchhhhhcCcCCccHHHHHHHHHhhccchhh-hcCCeEEEEcCHHHHhhh
Confidence 588999999999999999999999999999999887 5788875 6677777765432211 226899999999998765
Q ss_pred CCCC--ccchhhHHHHHHHHhhcCCCCc-c-ccCcccccc-----CCCCCccEEEeeCCCCCccccCCCCCCCc
Q 020787 133 FGNT--QMTVNNQIVVGTLMNLSDNPTR-V-SIGQDWRES-----DITNRIPIIFTGNDFSTIYAPLIRDGRME 197 (321)
Q Consensus 133 ~~~t--~~~v~~q~V~~tLl~llD~~~~-v-ql~g~~~~~-----~~~~~V~VIaaTNrp~~LDpALlRpGRfD 197 (321)
+++. ..+.....+...|+.++++... + ..++..... -.+.++.+|+||| ++.|++++.| ||+
T Consensus 153 ~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~-~~~l~~~l~~--R~~ 223 (376)
T 1um8_A 153 SENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGA-FDGLAEIIKK--RTT 223 (376)
T ss_dssp -----------CHHHHHHHHHHHHCCEEC---------------CEECTTCEEEEEEC-CTTHHHHTTT--SCS
T ss_pred cCCCceecccchHHHHHHHHHHhhccceecccccccccCCcceEEEecCCeEEEecCC-HHHHHHHHHH--Hhc
Confidence 4321 1122223477789999885420 0 011100000 0035677888888 7888888877 665
No 42
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.69 E-value=4.1e-17 Score=170.75 Aligned_cols=137 Identities=19% Similarity=0.206 Sum_probs=92.3
Q ss_pred HhccccCCCCcHHHHHHHHHHHc----------CCceEEeeccccc--cccCCCcHHHHHHHHHHHHhhhhhcCCceEEE
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM----------GIEPVIMSAGELE--SERAGEPGKLIRERYRTASQVVQNQGKMSCLM 122 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~----------g~~~i~vs~~eL~--s~~~GEser~IR~~F~~A~~~~~~~gaPcILF 122 (321)
.++||||||||||++|+++|.++ +..++.++.+.+. .+|.|+.++.++.+|..+... +.|+|||
T Consensus 193 ~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~g~~~~g~~~~~l~~~~~~~~~~----~~~~iL~ 268 (854)
T 1qvr_A 193 NPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAVIQEVVQS----QGEVILF 268 (854)
T ss_dssp CCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-----------CHHHHHHHHHHHHHTT----CSSEEEE
T ss_pred ceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhccCccchHHHHHHHHHHHHHHhc----CCCeEEE
Confidence 47899999999999999999998 8999999999998 679999999999999988742 4799999
Q ss_pred eecccccCCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCC----CccccCCCCCCCcc
Q 020787 123 INDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFS----TIYAPLIRDGRMEK 198 (321)
Q Consensus 123 IDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~----~LDpALlRpGRfDr 198 (321)
|||||.+.+..+..+ .+.+...|..++. ..++.+|+|||.++ .+|++|+| ||+.
T Consensus 269 IDEi~~l~~~~~~~g----~~~~~~~L~~~l~----------------~~~i~~I~at~~~~~~~~~~d~aL~r--Rf~~ 326 (854)
T 1qvr_A 269 IDELHTVVGAGKAEG----AVDAGNMLKPALA----------------RGELRLIGATTLDEYREIEKDPALER--RFQP 326 (854)
T ss_dssp ECCC-----------------------HHHHH----------------TTCCCEEEEECHHHHHHHTTCTTTCS--CCCC
T ss_pred EecHHHHhccCCccc----hHHHHHHHHHHHh----------------CCCeEEEEecCchHHhhhccCHHHHh--CCce
Confidence 999999876543211 1122233433333 24688999999886 48999999 9997
Q ss_pred eec-CCCHHHHHHHHHHHhh
Q 020787 199 FYW-QPNLEDILNIVHRMYE 217 (321)
Q Consensus 199 ~i~-~Pd~~~R~~Il~~~~~ 217 (321)
... .|+.+++.+||+.++.
T Consensus 327 i~l~~p~~~e~~~iL~~~~~ 346 (854)
T 1qvr_A 327 VYVDEPTVEETISILRGLKE 346 (854)
T ss_dssp EEECCCCHHHHHHHHHHHHH
T ss_pred EEeCCCCHHHHHHHHHhhhh
Confidence 333 4999999999986654
No 43
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.68 E-value=1.3e-16 Score=163.54 Aligned_cols=150 Identities=19% Similarity=0.206 Sum_probs=110.4
Q ss_pred HhccccCCCCcHHHHHHHHHHHc----------CCceEEeeccccc--cccCCCcHHHHHHHHHHHHhhhhhcCCceEEE
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM----------GIEPVIMSAGELE--SERAGEPGKLIRERYRTASQVVQNQGKMSCLM 122 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~----------g~~~i~vs~~eL~--s~~~GEser~IR~~F~~A~~~~~~~gaPcILF 122 (321)
-++|+||||||||++|+++|.++ +..++.++.+++. .+|.|+.++.++.+|..+... .++|||
T Consensus 209 ~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~~~~~~g~~e~~l~~~~~~~~~~-----~~~iL~ 283 (758)
T 1r6b_X 209 NPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQD-----TNSILF 283 (758)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCCCCSSCHHHHHHHHHHHHSSS-----SCEEEE
T ss_pred CeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhccccccchHHHHHHHHHHHHHhc-----CCeEEE
Confidence 46899999999999999999997 7788999988888 579999999999999988643 689999
Q ss_pred eecccccCCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCC-----CccccCCCCCCCc
Q 020787 123 INDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFS-----TIYAPLIRDGRME 197 (321)
Q Consensus 123 IDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~-----~LDpALlRpGRfD 197 (321)
|||||.+++..+.... ...+...|..+++ ..++.+|+|||.++ .+||+|.| ||+
T Consensus 284 IDEi~~l~~~~~~~~~---~~~~~~~L~~~l~----------------~~~~~~I~at~~~~~~~~~~~d~aL~~--Rf~ 342 (758)
T 1r6b_X 284 IDEIHTIIGAGAASGG---QVDAANLIKPLLS----------------SGKIRVIGSTTYQEFSNIFEKDRALAR--RFQ 342 (758)
T ss_dssp ETTTTTTTTSCCSSSC---HHHHHHHHSSCSS----------------SCCCEEEEEECHHHHHCCCCCTTSSGG--GEE
T ss_pred EechHHHhhcCCCCcc---hHHHHHHHHHHHh----------------CCCeEEEEEeCchHHhhhhhcCHHHHh--Cce
Confidence 9999998876442211 1223333433332 24688999999754 68999999 998
Q ss_pred ceec-CCCHHHHHHHHHHHhhc------CCCCHHHHHHhh
Q 020787 198 KFYW-QPNLEDILNIVHRMYEK------DGITKDEVGSIV 230 (321)
Q Consensus 198 r~i~-~Pd~~~R~~Il~~~~~~------~~l~~~dl~~L~ 230 (321)
.... .|+.++|.+||+.+... ..++.+.+..++
T Consensus 343 ~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~ 382 (758)
T 1r6b_X 343 KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAV 382 (758)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred EEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 5332 59999999999876643 345655554444
No 44
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.67 E-value=2.8e-16 Score=142.89 Aligned_cols=156 Identities=17% Similarity=0.112 Sum_probs=108.3
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeeccccccccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeecccccCCCCC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG 134 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~~r~~ 134 (321)
.++|+||||||||++|++++++++.+++.++++.+.. ...+...|..+ ...+++|||||||...+.
T Consensus 40 ~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~------~~~l~~~l~~~------~~~~~~l~lDEi~~l~~~-- 105 (324)
T 1hqc_A 40 HLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK------PGDLAAILANS------LEEGDILFIDEIHRLSRQ-- 105 (324)
T ss_dssp CCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCS------HHHHHHHHTTT------CCTTCEEEETTTTSCCHH--
T ss_pred cEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCC------hHHHHHHHHHh------ccCCCEEEEECCcccccc--
Confidence 5789999999999999999999999999999887743 33444444321 237899999999987521
Q ss_pred CCccchhhHHHHHHHHhhcCCCCccccCcc-ccccC---CCCCccEEEeeCCCCCccccCCCCCCCcceec--CCCHHHH
Q 020787 135 NTQMTVNNQIVVGTLMNLSDNPTRVSIGQD-WRESD---ITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYW--QPNLEDI 208 (321)
Q Consensus 135 ~t~~~v~~q~V~~tLl~llD~~~~vql~g~-~~~~~---~~~~V~VIaaTNrp~~LDpALlRpGRfDr~i~--~Pd~~~R 208 (321)
....|+..+++...--+.+. ..... ...++.+|+|||+++.++++|++ ||+..+. .|+.+++
T Consensus 106 ----------~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~--R~~~~i~l~~~~~~e~ 173 (324)
T 1hqc_A 106 ----------AEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLS--RFGIVEHLEYYTPEEL 173 (324)
T ss_dssp ----------HHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTTT--TCSCEEECCCCCHHHH
T ss_pred ----------hHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcccCCHHHHh--cccEEEecCCCCHHHH
Confidence 22334444442210011110 00000 01357899999999999999987 9976554 4899999
Q ss_pred HHHHHHHhhcC--CCCHHHHHHhhhCCCCC
Q 020787 209 LNIVHRMYEKD--GITKDEVGSIVKTFPNQ 236 (321)
Q Consensus 209 ~~Il~~~~~~~--~l~~~dl~~L~d~f~gq 236 (321)
.++++.+.... .++.+.+..|+...+|-
T Consensus 174 ~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~ 203 (324)
T 1hqc_A 174 AQGVMRDARLLGVRITEEAALEIGRRSRGT 203 (324)
T ss_dssp HHHHHHHHHTTTCCCCHHHHHHHHHHSCSC
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHccCC
Confidence 99999887754 46778888888776664
No 45
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.67 E-value=1.7e-17 Score=136.68 Aligned_cols=119 Identities=14% Similarity=0.134 Sum_probs=90.6
Q ss_pred HhccccCCCCcHHHHHHHHHHHc----------CCceEEeeccccc--cccCCCcHHHHHHHHHHHHhhhhhcCCceEEE
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM----------GIEPVIMSAGELE--SERAGEPGKLIRERYRTASQVVQNQGKMSCLM 122 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~----------g~~~i~vs~~eL~--s~~~GEser~IR~~F~~A~~~~~~~gaPcILF 122 (321)
.++||||||||||++|+++|+++ +.+++.++.+++. .++.|+.+..+++++..+... +.|++||
T Consensus 45 ~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~vl~ 120 (187)
T 2p65_A 45 NPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLSSLIAGAKYRGDFEERLKSILKEVQDA----EGQVVMF 120 (187)
T ss_dssp EEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECHHHHHHHCCSHHHHHHHHHHHHHHHHHT----TTSEEEE
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeHHHhhcCCCchhHHHHHHHHHHHHHHhc----CCceEEE
Confidence 46899999999999999999997 8889999888876 446788888899888877643 4799999
Q ss_pred eecccccCCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCC-----CccccCCCCCCCc
Q 020787 123 INDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFS-----TIYAPLIRDGRME 197 (321)
Q Consensus 123 IDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~-----~LDpALlRpGRfD 197 (321)
|||+|...+.....+.. +.+...|..+++ ..++.+|+|||.++ .+|++|+| ||+
T Consensus 121 iDe~~~l~~~~~~~~~~---~~~~~~l~~~~~----------------~~~~~ii~~~~~~~~~~~~~~~~~l~~--R~~ 179 (187)
T 2p65_A 121 IDEIHTVVGAGAVAEGA---LDAGNILKPMLA----------------RGELRCIGATTVSEYRQFIEKDKALER--RFQ 179 (187)
T ss_dssp ETTGGGGSSSSSSCTTS---CCTHHHHHHHHH----------------TTCSCEEEEECHHHHHHHTTTCHHHHH--HEE
T ss_pred EeCHHHhcccccccccc---hHHHHHHHHHHh----------------cCCeeEEEecCHHHHHHHHhccHHHHH--hcC
Confidence 99999987543311111 123333444433 24688999999886 68999999 999
Q ss_pred c
Q 020787 198 K 198 (321)
Q Consensus 198 r 198 (321)
.
T Consensus 180 ~ 180 (187)
T 2p65_A 180 Q 180 (187)
T ss_dssp E
T ss_pred c
Confidence 7
No 46
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.67 E-value=8.8e-17 Score=147.44 Aligned_cols=147 Identities=17% Similarity=0.260 Sum_probs=105.9
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeeccccccccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeecccccCCCCC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG 134 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~~r~~ 134 (321)
.++++||||||||++|+++|++++..++.+++++. +...+++.+..+.+.....+.++||||||+|...++
T Consensus 50 ~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~-------~~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~~-- 120 (324)
T 3u61_B 50 IILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDC-------KIDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGLA-- 120 (324)
T ss_dssp EEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTC-------CHHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGGH--
T ss_pred EEEeeCcCCCCHHHHHHHHHHHhCCCEEEEccccc-------CHHHHHHHHHHHHhhcccCCCCeEEEEECCcccCcH--
Confidence 57889999999999999999999999999998762 266777777665444322457999999999987521
Q ss_pred CCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccccCCCCCCCcceec-CCCHHHHHHHHH
Q 020787 135 NTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYW-QPNLEDILNIVH 213 (321)
Q Consensus 135 ~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpALlRpGRfDr~i~-~Pd~~~R~~Il~ 213 (321)
.....|+..++.+ ..++.+|+|||+++.++++|++ |+..+-+ .|+.++|.+|++
T Consensus 121 ---------~~~~~L~~~le~~--------------~~~~~iI~~~n~~~~l~~~l~s--R~~~i~~~~~~~~e~~~il~ 175 (324)
T 3u61_B 121 ---------ESQRHLRSFMEAY--------------SSNCSIIITANNIDGIIKPLQS--RCRVITFGQPTDEDKIEMMK 175 (324)
T ss_dssp ---------HHHHHHHHHHHHH--------------GGGCEEEEEESSGGGSCTTHHH--HSEEEECCCCCHHHHHHHHH
T ss_pred ---------HHHHHHHHHHHhC--------------CCCcEEEEEeCCccccCHHHHh--hCcEEEeCCCCHHHHHHHHH
Confidence 1233455555521 2368899999999999999999 7865333 489999877765
Q ss_pred HH-------hhcC--CCCH-HHHHHhhhCCCC
Q 020787 214 RM-------YEKD--GITK-DEVGSIVKTFPN 235 (321)
Q Consensus 214 ~~-------~~~~--~l~~-~dl~~L~d~f~g 235 (321)
.+ +... .++. +.+..|+...+|
T Consensus 176 ~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g 207 (324)
T 3u61_B 176 QMIRRLTEICKHEGIAIADMKVVAALVKKNFP 207 (324)
T ss_dssp HHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCC
Confidence 33 2333 3455 667777765544
No 47
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.64 E-value=1.5e-16 Score=156.43 Aligned_cols=133 Identities=19% Similarity=0.219 Sum_probs=92.4
Q ss_pred hccccCCCCcHHHHHHHHHHHc----------CCceEEeeccccccccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeec
Q 020787 56 LCIWGGKGQGKSFQTELIFQAM----------GIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMIND 125 (321)
Q Consensus 56 LgL~GPPGcGKTllaravA~e~----------g~~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDE 125 (321)
++|+||||||||++|+++|..+ +.+++.++.+ .+|.|+.+..++.+|.++.+. .|+|||||
T Consensus 204 ~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~---~~~~g~~e~~~~~~~~~~~~~-----~~~iLfiD- 274 (468)
T 3pxg_A 204 PVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG---TKYRGEFEDRLKKVMDEIRQA-----GNIILFID- 274 (468)
T ss_dssp EEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-------------CTTHHHHHHHHHTC-----CCCEEEEC-
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC---ccccchHHHHHHHHHHHHHhc-----CCeEEEEe-
Confidence 5899999999999999999997 8899999988 889999999999999999743 79999999
Q ss_pred ccccCCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCC-----CccccCCCCCCCccee
Q 020787 126 IDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFS-----TIYAPLIRDGRMEKFY 200 (321)
Q Consensus 126 IDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~-----~LDpALlRpGRfDr~i 200 (321)
+ +. .....|+..+. ...+.||+|||.++ .+||+|+| ||....
T Consensus 275 -----~----~~------~a~~~L~~~L~----------------~g~v~vI~at~~~e~~~~~~~~~al~~--Rf~~i~ 321 (468)
T 3pxg_A 275 -----A----AI------DASNILKPSLA----------------RGELQCIGATTLDEYRKYIEKDAALER--RFQPIQ 321 (468)
T ss_dssp -----C------------------CCCTT----------------SSSCEEEEECCTTTTHHHHTTCSHHHH--SEEEEE
T ss_pred -----C----ch------hHHHHHHHhhc----------------CCCEEEEecCCHHHHHHHhhcCHHHHH--hCccce
Confidence 1 11 12223333332 24688999999998 79999999 998733
Q ss_pred c-CCCHHHHHHHHHHHhhc----C--CCCHHHHHHhh
Q 020787 201 W-QPNLEDILNIVHRMYEK----D--GITKDEVGSIV 230 (321)
Q Consensus 201 ~-~Pd~~~R~~Il~~~~~~----~--~l~~~dl~~L~ 230 (321)
. .|+.+++..||+.+... . .++.+.+..++
T Consensus 322 v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~ 358 (468)
T 3pxg_A 322 VDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAV 358 (468)
T ss_dssp CCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 3 49999999999977654 2 35555554444
No 48
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.64 E-value=1.4e-16 Score=164.09 Aligned_cols=133 Identities=18% Similarity=0.204 Sum_probs=92.8
Q ss_pred HhccccCCCCcHHHHHHHHHHHc----------CCceEEeeccccccccCCCcHHHHHHHHHHHHhhhhhcCCceEEEee
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM----------GIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMIN 124 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~----------g~~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~~gaPcILFID 124 (321)
-++||||||||||++|+++|+.+ ++.++.++. -.+|.|+.++.++.+|.+|.. ..|+|||||
T Consensus 203 ~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~---g~~~~G~~e~~l~~~~~~~~~-----~~~~iLfiD 274 (758)
T 3pxi_A 203 NPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM---GTKYRGEFEDRLKKVMDEIRQ-----AGNIILFID 274 (758)
T ss_dssp EEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-------------CTTHHHHHHHHHT-----CCCCEEEEC
T ss_pred CeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc---cccccchHHHHHHHHHHHHHh-----cCCEEEEEc
Confidence 46899999999999999999997 888888887 677999999999999999974 389999999
Q ss_pred cccccCCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCC-----CccccCCCCCCCcce
Q 020787 125 DIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFS-----TIYAPLIRDGRMEKF 199 (321)
Q Consensus 125 EIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~-----~LDpALlRpGRfDr~ 199 (321)
+ +. .....|+..+. ...+.+|+|||..+ .+||+|+| ||..
T Consensus 275 ---------~-~~------~~~~~L~~~l~----------------~~~v~~I~at~~~~~~~~~~~d~al~r--Rf~~- 319 (758)
T 3pxi_A 275 ---------A-AI------DASNILKPSLA----------------RGELQCIGATTLDEYRKYIEKDAALER--RFQP- 319 (758)
T ss_dssp ---------C---------------CCCTT----------------SSSCEEEEECCTTTTHHHHTTCSHHHH--SEEE-
T ss_pred ---------C-ch------hHHHHHHHHHh----------------cCCEEEEeCCChHHHHHHhhccHHHHh--hCcE-
Confidence 1 11 12223333332 24688999999999 79999999 9965
Q ss_pred ec--CCCHHHHHHHHHHHhhc----C--CCCHHHHHHhh
Q 020787 200 YW--QPNLEDILNIVHRMYEK----D--GITKDEVGSIV 230 (321)
Q Consensus 200 i~--~Pd~~~R~~Il~~~~~~----~--~l~~~dl~~L~ 230 (321)
++ .|+.+++.+||+.+... . .++.+.+..++
T Consensus 320 i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~ 358 (758)
T 3pxi_A 320 IQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAV 358 (758)
T ss_dssp EECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHH
T ss_pred EEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 44 49999999999976554 2 35555554443
No 49
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.64 E-value=8.5e-16 Score=138.90 Aligned_cols=158 Identities=16% Similarity=0.192 Sum_probs=104.2
Q ss_pred HhccccCCCCcHHHHHHHHHHHc---CCceEEeeccccccc-----cCCCcHHHH----HHHHHHHHhhhhhcCCceEEE
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM---GIEPVIMSAGELESE-----RAGEPGKLI----RERYRTASQVVQNQGKMSCLM 122 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~---g~~~i~vs~~eL~s~-----~~GEser~I----R~~F~~A~~~~~~~gaPcILF 122 (321)
.++|+||||||||++|+++|+.+ +.+++.++.+++... +.|.+...+ ...|..|... ...+|||
T Consensus 49 ~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~----~~~~vl~ 124 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRR----RPYSVIL 124 (311)
T ss_dssp EEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHHHHHHCCCTTSTTTTTCCHHHHHHHH----CSSEEEE
T ss_pred EEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccHHHhcCCCCccccccccchHHHHHHh----CCCeEEE
Confidence 68999999999999999999998 567999998877542 222111000 0233334322 2469999
Q ss_pred eecccccCCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCC--------------------
Q 020787 123 INDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGND-------------------- 182 (321)
Q Consensus 123 IDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNr-------------------- 182 (321)
|||||...+ .+...|+.++++.....-.+ ...+ .+++.||+|||.
T Consensus 125 lDEi~~l~~------------~~~~~Ll~~le~~~~~~~~~--~~~~-~~~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~ 189 (311)
T 4fcw_A 125 FDAIEKAHP------------DVFNILLQMLDDGRLTDSHG--RTVD-FRNTVIIMTSNLGSPLILEGLQKGWPYERIRD 189 (311)
T ss_dssp EETGGGSCH------------HHHHHHHHHHHHSEEECTTS--CEEE-CTTEEEEEEESTTHHHHHTTTTSCCCSSTHHH
T ss_pred EeChhhcCH------------HHHHHHHHHHhcCEEEcCCC--CEEE-CCCcEEEEecccCHHHHHhhhcccccHHHHHH
Confidence 999998732 34556777776432111000 0011 236669999999
Q ss_pred ------CCCccccCCCCCCCcceec--CCCHHHHHHHHHHHhhc-----------CCCCHHHHHHhhh-CC
Q 020787 183 ------FSTIYAPLIRDGRMEKFYW--QPNLEDILNIVHRMYEK-----------DGITKDEVGSIVK-TF 233 (321)
Q Consensus 183 ------p~~LDpALlRpGRfDr~i~--~Pd~~~R~~Il~~~~~~-----------~~l~~~dl~~L~d-~f 233 (321)
...++|+|+. ||+..+. .|+.+++..|++.+++. ..++.+.+..|+. .+
T Consensus 190 ~~~~~~~~~~~~~l~~--R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 258 (311)
T 4fcw_A 190 EVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQMSYLRARLAEKRISLELTEAAKDFLAERGY 258 (311)
T ss_dssp HTHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHTHHHHHHHHTTTCEEEECHHHHHHHHHHSC
T ss_pred HHHHHHHHhCCHHHHh--cCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCCcEEEeCHHHHHHHHHhCC
Confidence 5578888884 9997664 37999999999876543 1367788888876 45
No 50
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.63 E-value=4.5e-16 Score=153.33 Aligned_cols=143 Identities=20% Similarity=0.262 Sum_probs=106.4
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeeccccccccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeecccccCCCCC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG 134 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~~r~~ 134 (321)
.++||||||||||++|+++|+.++.+|+.+++. +.+.+.+|++|..|..... .+.++||||||||...+.
T Consensus 52 ~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~-------~~~~~~ir~~~~~a~~~~~-~~~~~iLfIDEI~~l~~~-- 121 (447)
T 3pvs_A 52 SMILWGPPGTGKTTLAEVIARYANADVERISAV-------TSGVKEIREAIERARQNRN-AGRRTILFVDEVHRFNKS-- 121 (447)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTCEEEEEETT-------TCCHHHHHHHHHHHHHHHH-TTCCEEEEEETTTCC-----
T ss_pred EEEEECCCCCcHHHHHHHHHHHhCCCeEEEEec-------cCCHHHHHHHHHHHHHhhh-cCCCcEEEEeChhhhCHH--
Confidence 489999999999999999999999999999874 3456789999999876543 578999999999987432
Q ss_pred CCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEee--CCCCCccccCCCCCCCcceec-CCCHHHHHHH
Q 020787 135 NTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTG--NDFSTIYAPLIRDGRMEKFYW-QPNLEDILNI 211 (321)
Q Consensus 135 ~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaT--Nrp~~LDpALlRpGRfDr~i~-~Pd~~~R~~I 211 (321)
. +..|+..+++ ..+.+|++| |....++++|++ |+..+.+ .|+.+++..|
T Consensus 122 -~---------q~~LL~~le~----------------~~v~lI~att~n~~~~l~~aL~s--R~~v~~l~~l~~edi~~i 173 (447)
T 3pvs_A 122 -Q---------QDAFLPHIED----------------GTITFIGATTENPSFELNSALLS--RARVYLLKSLSTEDIEQV 173 (447)
T ss_dssp -------------CCHHHHHT----------------TSCEEEEEESSCGGGSSCHHHHT--TEEEEECCCCCHHHHHHH
T ss_pred -H---------HHHHHHHHhc----------------CceEEEecCCCCcccccCHHHhC--ceeEEeeCCcCHHHHHHH
Confidence 1 1124444441 346777766 555689999999 7765444 4899999999
Q ss_pred HHHHhhc-------C--CCCHHHHHHhhhCCCC
Q 020787 212 VHRMYEK-------D--GITKDEVGSIVKTFPN 235 (321)
Q Consensus 212 l~~~~~~-------~--~l~~~dl~~L~d~f~g 235 (321)
++..+.. . .++.+.+..|+...+|
T Consensus 174 l~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~G 206 (447)
T 3pvs_A 174 LTQAMEDKTRGYGGQDIVLPDETRRAIAELVNG 206 (447)
T ss_dssp HHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCS
T ss_pred HHHHHHHHhhhhccccCcCCHHHHHHHHHHCCC
Confidence 9888765 2 2677777877765544
No 51
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.63 E-value=3.4e-16 Score=144.13 Aligned_cols=149 Identities=13% Similarity=0.180 Sum_probs=101.4
Q ss_pred HhccccCCCCcHHHHHHHHHHHc---CCceEEeeccccccccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeecccccCC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM---GIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLG 131 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~---g~~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~~ 131 (321)
.++||||||||||++|+++++++ +.+++.+++.++.+.+.+.-.....+.|..+. ..|++|||||||...+
T Consensus 39 ~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~vL~iDEi~~l~~ 112 (324)
T 1l8q_A 39 PIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEHLKKGTINEFRNMY------KSVDLLLLDDVQFLSG 112 (324)
T ss_dssp SEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHHHHHHTCHHHHHHHH------HTCSEEEEECGGGGTT
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHcCcHHHHHHHh------cCCCEEEEcCcccccC
Confidence 58899999999999999999999 99999999998876655444333334444432 1589999999999764
Q ss_pred CCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCC---CccccCCCCCCCc--ceecC-CCH
Q 020787 132 RFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFS---TIYAPLIRDGRME--KFYWQ-PNL 205 (321)
Q Consensus 132 r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~---~LDpALlRpGRfD--r~i~~-Pd~ 205 (321)
... .| ..|+.+++. +.. .....|++++|.|. .++++|++ ||+ ..+.+ |+.
T Consensus 113 ~~~-------~~---~~l~~~l~~---------~~~---~~~~iii~~~~~~~~l~~l~~~L~s--R~~~~~~i~l~~~~ 168 (324)
T 1l8q_A 113 KER-------TQ---IEFFHIFNT---------LYL---LEKQIILASDRHPQKLDGVSDRLVS--RFEGGILVEIELDN 168 (324)
T ss_dssp CHH-------HH---HHHHHHHHH---------HHH---TTCEEEEEESSCGGGCTTSCHHHHH--HHHTSEEEECCCCH
T ss_pred ChH-------HH---HHHHHHHHH---------HHH---CCCeEEEEecCChHHHHHhhhHhhh--cccCceEEEeCCCH
Confidence 210 11 223333331 000 11233444455555 68899987 886 34444 588
Q ss_pred HHHHHHHHHHhhcC--CCCHHHHHHhhhCC
Q 020787 206 EDILNIVHRMYEKD--GITKDEVGSIVKTF 233 (321)
Q Consensus 206 ~~R~~Il~~~~~~~--~l~~~dl~~L~d~f 233 (321)
++|.+|++..+... .++.+.+..|+...
T Consensus 169 ~e~~~il~~~~~~~~~~l~~~~l~~l~~~~ 198 (324)
T 1l8q_A 169 KTRFKIIKEKLKEFNLELRKEVIDYLLENT 198 (324)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHhC
Confidence 99999999887754 46778888888776
No 52
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.63 E-value=1.3e-15 Score=139.64 Aligned_cols=152 Identities=13% Similarity=0.146 Sum_probs=101.0
Q ss_pred HhccccCCCCcHHHHHHHHHHHc---------CCceEEeeccccccc----------------cCCCcHHHHHHHHHHHH
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM---------GIEPVIMSAGELESE----------------RAGEPGKLIRERYRTAS 109 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~---------g~~~i~vs~~eL~s~----------------~~GEser~IR~~F~~A~ 109 (321)
.++||||||||||++++++++++ +..++.+++.+..+. +.|.+...+.+.+..+.
T Consensus 46 ~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l 125 (387)
T 2v1u_A 46 NALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRL 125 (387)
T ss_dssp CEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHH
Confidence 68899999999999999999999 889999998764332 23444444333333332
Q ss_pred hhhhhcCCceEEEeecccccCCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCC---CCc
Q 020787 110 QVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDF---STI 186 (321)
Q Consensus 110 ~~~~~~gaPcILFIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp---~~L 186 (321)
+ ..++|++|||||+|.+.... ..+.+...|+..+++. +...++.+|+|||++ +.+
T Consensus 126 ~---~~~~~~vlilDEi~~l~~~~-------~~~~~l~~l~~~~~~~------------~~~~~~~~I~~t~~~~~~~~l 183 (387)
T 2v1u_A 126 S---RLRGIYIIVLDEIDFLPKRP-------GGQDLLYRITRINQEL------------GDRVWVSLVGITNSLGFVENL 183 (387)
T ss_dssp T---TSCSEEEEEEETTTHHHHST-------THHHHHHHHHHGGGCC-----------------CEEEEECSCSTTSSSS
T ss_pred h---ccCCeEEEEEccHhhhcccC-------CCChHHHhHhhchhhc------------CCCceEEEEEEECCCchHhhh
Confidence 2 25679999999999975431 0233444455444310 002478899999998 788
Q ss_pred cccCCCCCCCcc-eecC--CCHHHHHHHHHHHhhc----CCCCHHHHHHhh
Q 020787 187 YAPLIRDGRMEK-FYWQ--PNLEDILNIVHRMYEK----DGITKDEVGSIV 230 (321)
Q Consensus 187 DpALlRpGRfDr-~i~~--Pd~~~R~~Il~~~~~~----~~l~~~dl~~L~ 230 (321)
++++.+ ||.. .+.+ |+.+++.+|++..+.. ..++.+.+..++
T Consensus 184 ~~~l~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~ 232 (387)
T 2v1u_A 184 EPRVKS--SLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCA 232 (387)
T ss_dssp CHHHHT--TTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHH
T ss_pred CHHHHh--cCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHH
Confidence 889888 8865 4443 6899999999877653 345554444444
No 53
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.62 E-value=3.2e-15 Score=125.18 Aligned_cols=146 Identities=16% Similarity=0.218 Sum_probs=102.1
Q ss_pred hccccCCCCcHHHHHHHHHHHc-----CCceEEeeccccccccCCCcHHHHHHHHHHHHhhh-hhcCCceEEEeeccccc
Q 020787 56 LCIWGGKGQGKSFQTELIFQAM-----GIEPVIMSAGELESERAGEPGKLIRERYRTASQVV-QNQGKMSCLMINDIDAG 129 (321)
Q Consensus 56 LgL~GPPGcGKTllaravA~e~-----g~~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~-~~~gaPcILFIDEIDAg 129 (321)
++|+||||||||++|+++++++ ...++.++.++..+ ...+++......... ...+.+++|||||+|..
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l 114 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERG------IDVVRHKIKEFARTAPIGGAPFKIIFLDEADAL 114 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTC------HHHHHHHHHHHHTSCCSTTCSCEEEEEETGGGS
T ss_pred EEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccC------hHHHHHHHHHHhcccCCCccCceEEEEeChhhc
Confidence 7899999999999999999986 46688888765432 234444444333221 01257999999999997
Q ss_pred CCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccccCCCCCCCcceec-CCCHHHH
Q 020787 130 LGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYW-QPNLEDI 208 (321)
Q Consensus 130 ~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpALlRpGRfDr~i~-~Pd~~~R 208 (321)
.+. ....|+.+++.+ ..++.+|+|||.++.++++|.+ |+..... .|+.++.
T Consensus 115 ~~~------------~~~~l~~~l~~~--------------~~~~~~i~~~~~~~~~~~~l~~--r~~~i~~~~~~~~~~ 166 (226)
T 2chg_A 115 TAD------------AQAALRRTMEMY--------------SKSCRFILSCNYVSRIIEPIQS--RCAVFRFKPVPKEAM 166 (226)
T ss_dssp CHH------------HHHHHHHHHHHT--------------TTTEEEEEEESCGGGSCHHHHT--TSEEEECCCCCHHHH
T ss_pred CHH------------HHHHHHHHHHhc--------------CCCCeEEEEeCChhhcCHHHHH--hCceeecCCCCHHHH
Confidence 531 123455555521 2468899999999999999988 7774323 3789999
Q ss_pred HHHHHHHhhcC--CCCHHHHHHhhhCCCC
Q 020787 209 LNIVHRMYEKD--GITKDEVGSIVKTFPN 235 (321)
Q Consensus 209 ~~Il~~~~~~~--~l~~~dl~~L~d~f~g 235 (321)
.++++.++... .++.+.+..|+...+|
T Consensus 167 ~~~l~~~~~~~~~~~~~~~~~~l~~~~~g 195 (226)
T 2chg_A 167 KKRLLEICEKEGVKITEDGLEALIYISGG 195 (226)
T ss_dssp HHHHHHHHHHHTCCBCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 99998877643 4677777777765554
No 54
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.62 E-value=1.8e-16 Score=157.25 Aligned_cols=154 Identities=16% Similarity=0.275 Sum_probs=101.7
Q ss_pred hHhccccCCCCcHHHHHHHHHHHcCCceEEeeccccccccCCCcHHH-------HHHHHHHHHhhhhhcCCceEEEeecc
Q 020787 54 ASLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKL-------IRERYRTASQVVQNQGKMSCLMINDI 126 (321)
Q Consensus 54 ~iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~~~GEser~-------IR~~F~~A~~~~~~~gaPcILFIDEI 126 (321)
..++||||||||||++|+++|+++|.+++.++++++.+++.++..-. ++..|..+.+.....++++||||||+
T Consensus 78 ~~lLL~GppGtGKTtla~~la~~l~~~~i~in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEi 157 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEV 157 (516)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSG
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECC
Confidence 37899999999999999999999999999999998876543322111 23344433211111358999999999
Q ss_pred cccCCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCC-CccccCCCCCCCcceec--CC
Q 020787 127 DAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFS-TIYAPLIRDGRMEKFYW--QP 203 (321)
Q Consensus 127 DAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~-~LDpALlRpGRfDr~i~--~P 203 (321)
|.+.+.. + .....|+++++ ..+++||++||+.. ..-++|.| +...+. .|
T Consensus 158 d~l~~~~---~------~~l~~L~~~l~----------------~~~~~iIli~~~~~~~~l~~l~~---r~~~i~f~~~ 209 (516)
T 1sxj_A 158 DGMSGGD---R------GGVGQLAQFCR----------------KTSTPLILICNERNLPKMRPFDR---VCLDIQFRRP 209 (516)
T ss_dssp GGCCTTS---T------THHHHHHHHHH----------------HCSSCEEEEESCTTSSTTGGGTT---TSEEEECCCC
T ss_pred Cccchhh---H------HHHHHHHHHHH----------------hcCCCEEEEEcCCCCccchhhHh---ceEEEEeCCC
Confidence 9986531 1 12334555554 13567888887654 11233433 223333 48
Q ss_pred CHHHHHHHHHHHhhcC--CCCHHHHHHhhhCCCC
Q 020787 204 NLEDILNIVHRMYEKD--GITKDEVGSIVKTFPN 235 (321)
Q Consensus 204 d~~~R~~Il~~~~~~~--~l~~~dl~~L~d~f~g 235 (321)
+.+++.++|+.++... .++.+.+..|+...+|
T Consensus 210 ~~~~~~~~L~~i~~~~~~~i~~~~l~~la~~s~G 243 (516)
T 1sxj_A 210 DANSIKSRLMTIAIREKFKLDPNVIDRLIQTTRG 243 (516)
T ss_dssp CHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 9999999998776543 4777788888877666
No 55
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.61 E-value=1.2e-15 Score=156.40 Aligned_cols=156 Identities=18% Similarity=0.271 Sum_probs=107.9
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeeccccccc------------cCCCcHH-HHHHHHHHHHhhhhhcCCceEE
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESE------------RAGEPGK-LIRERYRTASQVVQNQGKMSCL 121 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~------------~~GEser-~IR~~F~~A~~~~~~~gaPcIL 121 (321)
.++|+||||||||++|+++|+.++.+++.++.+++..+ |+|..+. .+.+.++ +..++||
T Consensus 490 ~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~--------~~~~~vl 561 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVI--------KHPHAVL 561 (758)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCCSSSCCCCSCSHHHHHTTHHHHHHH--------HCSSEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhHhhhcCCCCCCcCccccchHHHHHH--------hCCCcEE
Confidence 47899999999999999999999999999999998653 4442221 2222222 2257999
Q ss_pred EeecccccCCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCC-----------------
Q 020787 122 MINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFS----------------- 184 (321)
Q Consensus 122 FIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~----------------- 184 (321)
||||||..- ..+...|+.+||+....--.| ...+ ..++.||+|||.+.
T Consensus 562 ~lDEi~~~~------------~~~~~~Ll~~le~~~~~~~~g--~~~~-~~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~ 626 (758)
T 1r6b_X 562 LLDEIEKAH------------PDVFNILLQVMDNGTLTDNNG--RKAD-FRNVVLVMTTNAGVRETERKSIGLIHQDNST 626 (758)
T ss_dssp EEETGGGSC------------HHHHHHHHHHHHHSEEEETTT--EEEE-CTTEEEEEEECSSCC----------------
T ss_pred EEeCccccC------------HHHHHHHHHHhcCcEEEcCCC--CEEe-cCCeEEEEecCcchhhhhhcccCccccchHH
Confidence 999999753 235667888887432111011 1111 24788999999865
Q ss_pred --------CccccCCCCCCCcceecC--CCHHHHHHHHHHHhhc-----------CCCCHHHHHHhhh-CCCC
Q 020787 185 --------TIYAPLIRDGRMEKFYWQ--PNLEDILNIVHRMYEK-----------DGITKDEVGSIVK-TFPN 235 (321)
Q Consensus 185 --------~LDpALlRpGRfDr~i~~--Pd~~~R~~Il~~~~~~-----------~~l~~~dl~~L~d-~f~g 235 (321)
.++|+|+. |||..+.+ |+.+++..|++.+++. ..++.+.+..|+. .+++
T Consensus 627 ~~~~~~~~~~~~~l~~--R~~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~ 697 (758)
T 1r6b_X 627 DAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVSLEVSQEARNWLAEKGYDR 697 (758)
T ss_dssp -CHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHTTEEEEECHHHHHHHHHHHCBT
T ss_pred HHHHHHHHhcCHHHHh--hCCcceeeCCCCHHHHHHHHHHHHHHHHHHHHHCCcEEEeCHHHHHHHHHhCCCc
Confidence 67788875 99987765 6899999999876642 2367777777775 3443
No 56
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.59 E-value=1.2e-15 Score=149.02 Aligned_cols=159 Identities=17% Similarity=0.273 Sum_probs=104.5
Q ss_pred HhccccCCCCcHHHHHHHHHHHc-----CCceEEeeccccccccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeeccccc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM-----GIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAG 129 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~-----g~~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg 129 (321)
.++||||||||||++|+++|+++ +..++.+++.++.+.+.+.-.......|..+. ...|+||||||||.+
T Consensus 132 ~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~vL~IDEi~~l 206 (440)
T 2z4s_A 132 PLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKY-----RKKVDILLIDDVQFL 206 (440)
T ss_dssp CEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHHHHHHHHHTTCHHHHHHHH-----TTTCSEEEEECGGGG
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHcccHHHHHHHh-----cCCCCEEEEeCcccc
Confidence 58999999999999999999999 89999999988765443222211122333322 126999999999998
Q ss_pred CCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCC-CCC---ccccCCCCCCCc--ceec--
Q 020787 130 LGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGND-FST---IYAPLIRDGRME--KFYW-- 201 (321)
Q Consensus 130 ~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNr-p~~---LDpALlRpGRfD--r~i~-- 201 (321)
.++.. .| ..|+..++.. . ..+..||+|||+ |.. ++++|++ ||+ ..+.
T Consensus 207 ~~~~~-------~q---~~l~~~l~~l---------~----~~~~~iIitt~~~~~~l~~l~~~L~s--R~~~g~~i~l~ 261 (440)
T 2z4s_A 207 IGKTG-------VQ---TELFHTFNEL---------H----DSGKQIVICSDREPQKLSEFQDRLVS--RFQMGLVAKLE 261 (440)
T ss_dssp SSCHH-------HH---HHHHHHHHHH---------H----TTTCEEEEEESSCGGGCSSCCHHHHH--HHHSSBCCBCC
T ss_pred cCChH-------HH---HHHHHHHHHH---------H----HCCCeEEEEECCCHHHHHHHHHHHHh--hccCCeEEEeC
Confidence 75310 11 2233333310 0 124556667776 443 8889988 776 4443
Q ss_pred CCCHHHHHHHHHHHhhcC--CCCHHHHHHhhhCCCCCcchhhHH
Q 020787 202 QPNLEDILNIVHRMYEKD--GITKDEVGSIVKTFPNQALDFYGA 243 (321)
Q Consensus 202 ~Pd~~~R~~Il~~~~~~~--~l~~~dl~~L~d~f~gq~idf~gA 243 (321)
.|+.++|.+||+..+... .++.+.+..|+..++|-.=+.-++
T Consensus 262 ~p~~e~r~~iL~~~~~~~~~~i~~e~l~~la~~~~gn~R~l~~~ 305 (440)
T 2z4s_A 262 PPDEETRKSIARKMLEIEHGELPEEVLNFVAENVDDNLRRLRGA 305 (440)
T ss_dssp CCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHCCSCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHH
Confidence 489999999998877644 466777788887776643333333
No 57
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.59 E-value=6.9e-15 Score=151.53 Aligned_cols=151 Identities=15% Similarity=0.209 Sum_probs=105.4
Q ss_pred HhccccCCCCcHHHHHHHHHHHc---CCceEEeeccccccccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeecccccCC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM---GIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLG 131 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~---g~~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~~ 131 (321)
.++||||||||||++|+++|+.+ +.+|+.++.+++.+++.+... .|..|.. +..+|||||||||..-
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~~~~-----~l~~~~~----~~~~~vl~lDEi~~~~- 592 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHSTSGG-----QLTEKVR----RKPYSVVLLDAIEKAH- 592 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCCC--------CHHHHH----HCSSSEEEEECGGGSC-
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccccccccc-----hhhHHHH----hCCCeEEEEeCccccC-
Confidence 38899999999999999999998 789999999999999887622 2222322 2367999999999762
Q ss_pred CCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCC------------ccccCCCCCCCcce
Q 020787 132 RFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFST------------IYAPLIRDGRMEKF 199 (321)
Q Consensus 132 r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~------------LDpALlRpGRfDr~ 199 (321)
..+...|+.++|+-...-.+| ...+ ..++.||+|||.+.. +.|+|+ +|||..
T Consensus 593 -----------~~~~~~Ll~~le~g~~~~~~g--~~~~-~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~--~Rl~~~ 656 (758)
T 3pxi_A 593 -----------PDVFNILLQVLEDGRLTDSKG--RTVD-FRNTILIMTSNVGASEKDKVMGELKRAFRPEFI--NRIDEI 656 (758)
T ss_dssp -----------HHHHHHHHHHHHHSBCC-------CCB-CTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHH--TTSSEE
T ss_pred -----------HHHHHHHHHHhccCeEEcCCC--CEec-cCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHH--hhCCeE
Confidence 245667888887422111111 1111 357899999998776 566666 499986
Q ss_pred ecC--CCHHHHHHHHHHHhhc-----------CCCCHHHHHHhhh
Q 020787 200 YWQ--PNLEDILNIVHRMYEK-----------DGITKDEVGSIVK 231 (321)
Q Consensus 200 i~~--Pd~~~R~~Il~~~~~~-----------~~l~~~dl~~L~d 231 (321)
+.+ |+.+++..|++.++.. ..++.+.+..|+.
T Consensus 657 i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~ 701 (758)
T 3pxi_A 657 IVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAE 701 (758)
T ss_dssp EECC--CHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHG
T ss_pred EecCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEECHHHHHHHHH
Confidence 654 6889999999765532 1356777777765
No 58
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.57 E-value=9.6e-15 Score=122.94 Aligned_cols=145 Identities=11% Similarity=0.230 Sum_probs=99.3
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCce------------------------EEeeccccccccCCCcHHHHHHHHHHHHh
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEP------------------------VIMSAGELESERAGEPGKLIRERYRTASQ 110 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~------------------------i~vs~~eL~s~~~GEser~IR~~F~~A~~ 110 (321)
.++|+||||||||+++++++++++... +.+..+. ......++++++.+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~ 120 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQY 120 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHTTCCSSEEEEETTC------GGGHHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhccCCcceEEecCcc------cccHHHHHHHHHHhhh
Confidence 578999999999999999999986532 2222211 1234556666665432
Q ss_pred hhhhcCCceEEEeecccccCCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccccC
Q 020787 111 VVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPL 190 (321)
Q Consensus 111 ~~~~~gaPcILFIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpAL 190 (321)
.. ..++|++|||||+|...+ .....|+..++++ ..++.+|++||+++.+++++
T Consensus 121 ~~-~~~~~~vlviDe~~~l~~------------~~~~~l~~~l~~~--------------~~~~~~i~~t~~~~~~~~~l 173 (250)
T 1njg_A 121 AP-ARGRFKVYLIDEVHMLSR------------HSFNALLKTLEEP--------------PEHVKFLLATTDPQKLPVTI 173 (250)
T ss_dssp SC-SSSSSEEEEEETGGGSCH------------HHHHHHHHHHHSC--------------CTTEEEEEEESCGGGSCHHH
T ss_pred ch-hcCCceEEEEECcccccH------------HHHHHHHHHHhcC--------------CCceEEEEEeCChHhCCHHH
Confidence 21 145789999999998632 1223455555521 24788999999999999998
Q ss_pred CCCCCCcceec--CCCHHHHHHHHHHHhhcC--CCCHHHHHHhhhCCCC
Q 020787 191 IRDGRMEKFYW--QPNLEDILNIVHRMYEKD--GITKDEVGSIVKTFPN 235 (321)
Q Consensus 191 lRpGRfDr~i~--~Pd~~~R~~Il~~~~~~~--~l~~~dl~~L~d~f~g 235 (321)
++ |+. .+. .|+.++..++++..+... .++.+.+..++...+|
T Consensus 174 ~~--r~~-~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G 219 (250)
T 1njg_A 174 LS--RCL-QFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG 219 (250)
T ss_dssp HT--TSE-EEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTT
T ss_pred HH--Hhh-hccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCC
Confidence 87 553 333 368999999998887654 4567777777766555
No 59
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.55 E-value=5.3e-15 Score=126.83 Aligned_cols=142 Identities=15% Similarity=0.211 Sum_probs=96.2
Q ss_pred HhccccCCCCcHHHHHHHHHHHcC---CceEEeeccccccccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeecccccCC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMG---IEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLG 131 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g---~~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~~ 131 (321)
.++||||||||||++|+++|+++. ..++.++.+++.+.+. + .+ +. ...|++|||||+|....
T Consensus 54 ~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~~~~----~----~~----~~---~~~~~vliiDe~~~~~~ 118 (242)
T 3bos_A 54 AIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHASIST----A----LL----EG---LEQFDLICIDDVDAVAG 118 (242)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGGGSCG----G----GG----TT---GGGSSEEEEETGGGGTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHH----H----HH----Hh---ccCCCEEEEeccccccC
Confidence 688999999999999999999875 6788899888776531 1 11 11 23689999999999754
Q ss_pred CCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCC----CccccCCCCCCCc--ceec--CC
Q 020787 132 RFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFS----TIYAPLIRDGRME--KFYW--QP 203 (321)
Q Consensus 132 r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~----~LDpALlRpGRfD--r~i~--~P 203 (321)
.. .....|+.+++.. .. ...+.+|+|||... .++++|.+ |+. ..+. .|
T Consensus 119 ~~----------~~~~~l~~~l~~~---------~~---~~~~~ii~~~~~~~~~~~~~~~~l~~--r~~~~~~i~l~~~ 174 (242)
T 3bos_A 119 HP----------LWEEAIFDLYNRV---------AE---QKRGSLIVSASASPMEAGFVLPDLVS--RMHWGLTYQLQPM 174 (242)
T ss_dssp CH----------HHHHHHHHHHHHH---------HH---HCSCEEEEEESSCTTTTTCCCHHHHH--HHHHSEEEECCCC
T ss_pred CH----------HHHHHHHHHHHHH---------HH---cCCCeEEEEcCCCHHHHHHhhhhhhh--HhhcCceEEeCCC
Confidence 21 1122344444411 00 12233677666443 45677777 664 4454 38
Q ss_pred CHHHHHHHHHHHhhcC--CCCHHHHHHhhhCCCC
Q 020787 204 NLEDILNIVHRMYEKD--GITKDEVGSIVKTFPN 235 (321)
Q Consensus 204 d~~~R~~Il~~~~~~~--~l~~~dl~~L~d~f~g 235 (321)
+.+++.+|++.+++.. .++.+.+..|+..++|
T Consensus 175 ~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g 208 (242)
T 3bos_A 175 MDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMAR 208 (242)
T ss_dssp CGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC
Confidence 9999999999887754 4678888888887766
No 60
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.55 E-value=7.9e-15 Score=139.70 Aligned_cols=133 Identities=10% Similarity=0.077 Sum_probs=94.8
Q ss_pred HhccccCCCCcHHHHHHHHHHHc----------CCceEEeeccccccc----------c------CCCcHHHHHHHHHHH
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM----------GIEPVIMSAGELESE----------R------AGEPGKLIRERYRTA 108 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~----------g~~~i~vs~~eL~s~----------~------~GEser~IR~~F~~A 108 (321)
.++||||||||||++++++++++ ++.++.+++..+.++ . .|++.+.+++.|...
T Consensus 47 ~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~ 126 (318)
T 3te6_A 47 LFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKENLCGDISLEALNFYITNV 126 (318)
T ss_dssp EEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHS
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHh
Confidence 68999999999999999999999 467889998776543 1 356788999999875
Q ss_pred HhhhhhcCCceEEEeecccccCCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCcc-
Q 020787 109 SQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIY- 187 (321)
Q Consensus 109 ~~~~~~~gaPcILFIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LD- 187 (321)
.+. +++|+||||||||.+. + |.+.-.|+++ ...+ ..++.||+++|..+..+
T Consensus 127 ~~~---~~~~~ii~lDE~d~l~------~-----q~~L~~l~~~-------------~~~~-~s~~~vI~i~n~~d~~~~ 178 (318)
T 3te6_A 127 PKA---KKRKTLILIQNPENLL------S-----EKILQYFEKW-------------ISSK-NSKLSIICVGGHNVTIRE 178 (318)
T ss_dssp CGG---GSCEEEEEEECCSSSC------C-----THHHHHHHHH-------------HHCS-SCCEEEEEECCSSCCCHH
T ss_pred hhc---cCCceEEEEecHHHhh------c-----chHHHHHHhc-------------cccc-CCcEEEEEEecCcccchh
Confidence 222 4589999999999987 1 2333334432 2122 45789999999987644
Q ss_pred ---ccCCCCCCCc-cee-cC-CCHHHHHHHHHHHhh
Q 020787 188 ---APLIRDGRME-KFY-WQ-PNLEDILNIVHRMYE 217 (321)
Q Consensus 188 ---pALlRpGRfD-r~i-~~-Pd~~~R~~Il~~~~~ 217 (321)
+++.. ||. +.+ +. ++.++-.+|++..++
T Consensus 179 ~L~~~v~S--R~~~~~i~F~pYt~~el~~Il~~Rl~ 212 (318)
T 3te6_A 179 QINIMPSL--KAHFTEIKLNKVDKNELQQMIITRLK 212 (318)
T ss_dssp HHHTCHHH--HTTEEEEECCCCCHHHHHHHHHHHHH
T ss_pred hcchhhhc--cCCceEEEeCCCCHHHHHHHHHHHHH
Confidence 33333 675 333 33 599999999975544
No 61
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.53 E-value=2.1e-14 Score=132.76 Aligned_cols=143 Identities=16% Similarity=0.223 Sum_probs=97.0
Q ss_pred HhccccCCCCcHHHHHHHHHHHc-----------CCceEEeeccccc-c-----------------ccCCCcHHH-HHHH
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM-----------GIEPVIMSAGELE-S-----------------ERAGEPGKL-IRER 104 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~-----------g~~~i~vs~~eL~-s-----------------~~~GEser~-IR~~ 104 (321)
.++||||||||||++|+++++++ +..++.+++.+.. + ...|.+.+. +..+
T Consensus 47 ~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l 126 (384)
T 2qby_B 47 SNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKI 126 (384)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHH
Confidence 68999999999999999999998 9999999976543 1 123333333 3333
Q ss_pred HHHHHhhhhhcCCceEEEeecccccCCCCCCCccchhhHHH-HHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCC
Q 020787 105 YRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIV-VGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDF 183 (321)
Q Consensus 105 F~~A~~~~~~~gaPcILFIDEIDAg~~r~~~t~~~v~~q~V-~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp 183 (321)
+..+. ..++||||||+|.+....+ +.+ ...|+ + |. .++.||+|||++
T Consensus 127 ~~~l~------~~~~vlilDEi~~l~~~~~--------~~~~l~~l~---~----------~~-----~~~~iI~~t~~~ 174 (384)
T 2qby_B 127 KNGTR------NIRAIIYLDEVDTLVKRRG--------GDIVLYQLL---R----------SD-----ANISVIMISNDI 174 (384)
T ss_dssp HHHHS------SSCEEEEEETTHHHHHSTT--------SHHHHHHHH---T----------SS-----SCEEEEEECSST
T ss_pred HHHhc------cCCCEEEEECHHHhccCCC--------CceeHHHHh---c----------CC-----cceEEEEEECCC
Confidence 33322 2344999999999754311 122 33333 2 11 478999999998
Q ss_pred ---CCccccCCCCCCCcceecC--CCHHHHHHHHHHHhhc----CCCCHHHHHHhhh
Q 020787 184 ---STIYAPLIRDGRMEKFYWQ--PNLEDILNIVHRMYEK----DGITKDEVGSIVK 231 (321)
Q Consensus 184 ---~~LDpALlRpGRfDr~i~~--Pd~~~R~~Il~~~~~~----~~l~~~dl~~L~d 231 (321)
+.+++++++ ||...+.+ |+.++..+|++..++. ..++.+.+..++.
T Consensus 175 ~~~~~l~~~l~s--r~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~ 229 (384)
T 2qby_B 175 NVRDYMEPRVLS--SLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAA 229 (384)
T ss_dssp TTTTTSCHHHHH--TCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHH
T ss_pred chHhhhCHHHHh--cCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHH
Confidence 788999887 77665554 6999999999877653 3466555554443
No 62
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.53 E-value=2.3e-14 Score=128.72 Aligned_cols=146 Identities=17% Similarity=0.224 Sum_probs=103.7
Q ss_pred hccccCCCCcHHHHHHHHHHHc-----CCceEEeeccccccccCCCcHHHHHHHHHHHHhhhhh-cCCceEEEeeccccc
Q 020787 56 LCIWGGKGQGKSFQTELIFQAM-----GIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQN-QGKMSCLMINDIDAG 129 (321)
Q Consensus 56 LgL~GPPGcGKTllaravA~e~-----g~~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~-~gaPcILFIDEIDAg 129 (321)
++||||||||||++|+++|+++ +.+++.+++++... ...+++........... .+.++||||||+|..
T Consensus 41 ~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l 114 (319)
T 2chq_A 41 LLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERG------IDVVRHKIKEFARTAPIGGAPFKIIFLDEADAL 114 (319)
T ss_dssp EEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTC------TTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGS
T ss_pred EEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccC------hHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcC
Confidence 7899999999999999999997 45688888876432 12233333333211111 256899999999987
Q ss_pred CCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccccCCCCCCCcceec-CCCHHHH
Q 020787 130 LGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYW-QPNLEDI 208 (321)
Q Consensus 130 ~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpALlRpGRfDr~i~-~Pd~~~R 208 (321)
.+ .....|+..++.+ ..++.+|++||.++.++++|.+ |+....+ .|+.+++
T Consensus 115 ~~------------~~~~~L~~~le~~--------------~~~~~~i~~~~~~~~l~~~l~s--r~~~i~~~~~~~~~~ 166 (319)
T 2chq_A 115 TA------------DAQAALRRTMEMY--------------SKSCRFILSCNYVSRIIEPIQS--RCAVFRFKPVPKEAM 166 (319)
T ss_dssp CH------------HHHHTTGGGTSSS--------------SSSEEEEEEESCGGGSCHHHHT--TCEEEECCCCCHHHH
T ss_pred CH------------HHHHHHHHHHHhc--------------CCCCeEEEEeCChhhcchHHHh--hCeEEEecCCCHHHH
Confidence 42 1223456565532 3478899999999999999988 6654333 4799999
Q ss_pred HHHHHHHhhcCC--CCHHHHHHhhhCCCC
Q 020787 209 LNIVHRMYEKDG--ITKDEVGSIVKTFPN 235 (321)
Q Consensus 209 ~~Il~~~~~~~~--l~~~dl~~L~d~f~g 235 (321)
.++++.+++..+ ++.+.+..|+...+|
T Consensus 167 ~~~l~~~~~~~~~~i~~~~l~~l~~~~~G 195 (319)
T 2chq_A 167 KKRLLEICEKEGVKITEDGLEALIYISGG 195 (319)
T ss_dssp HHHHHHHHHTTCCCBCHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 999998887654 578888888876666
No 63
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.52 E-value=8.4e-15 Score=134.94 Aligned_cols=137 Identities=14% Similarity=0.201 Sum_probs=87.2
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeecc------ccccccCCCcHHHHHHHHHHHHhhhhhcCC---ceEEEeec
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAG------ELESERAGEPGKLIRERYRTASQVVQNQGK---MSCLMIND 125 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~------eL~s~~~GEser~IR~~F~~A~~~~~~~ga---PcILFIDE 125 (321)
.++||||||||||++|+++|+.++.+++.++.. ++.....-+... ..| .. +.. .+||||||
T Consensus 48 ~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l~g~~~~~~~~---~~~----~~---~~g~l~~~vl~iDE 117 (331)
T 2r44_A 48 HILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDLIGTMIYNQHK---GNF----EV---KKGPVFSNFILADE 117 (331)
T ss_dssp CEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHHEEEEEETTT---TEE----EE---EECTTCSSEEEEET
T ss_pred eEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhcCCceeecCCC---Cce----Ee---ccCcccccEEEEEc
Confidence 688999999999999999999999999988863 122111100000 000 00 112 38999999
Q ss_pred ccccCCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCC-----CccccCCCCCCCccee
Q 020787 126 IDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFS-----TIYAPLIRDGRMEKFY 200 (321)
Q Consensus 126 IDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~-----~LDpALlRpGRfDr~i 200 (321)
||...+ .+...|++.++.. .+.+.|.... ...++.||+|+|..+ .|+++|++ ||+..+
T Consensus 118 i~~~~~------------~~~~~Ll~~l~~~-~~~~~g~~~~--~~~~~~viat~np~~~~~~~~l~~~l~~--Rf~~~i 180 (331)
T 2r44_A 118 VNRSPA------------KVQSALLECMQEK-QVTIGDTTYP--LDNPFLVLATQNPVEQEGTYPLPEAQVD--RFMMKI 180 (331)
T ss_dssp GGGSCH------------HHHHHHHHHHHHS-EEEETTEEEE--CCSSCEEEEEECTTCCSCCCCCCHHHHT--TSSEEE
T ss_pred cccCCH------------HHHHHHHHHHhcC-ceeeCCEEEE--CCCCEEEEEecCCCcccCcccCCHHHHh--heeEEE
Confidence 998532 1334455555422 1233332111 123566777777443 28999998 998655
Q ss_pred c--CCCHHHHHHHHHHHhhc
Q 020787 201 W--QPNLEDILNIVHRMYEK 218 (321)
Q Consensus 201 ~--~Pd~~~R~~Il~~~~~~ 218 (321)
. .|+.++|.+|++.....
T Consensus 181 ~i~~p~~~~~~~il~~~~~~ 200 (331)
T 2r44_A 181 HLTYLDKESELEVMRRVSNM 200 (331)
T ss_dssp ECCCCCHHHHHHHHHHHHCT
T ss_pred EcCCCCHHHHHHHHHhcccc
Confidence 5 49999999999887654
No 64
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.51 E-value=2.9e-14 Score=130.41 Aligned_cols=147 Identities=12% Similarity=0.185 Sum_probs=102.3
Q ss_pred HhccccCCCCcHHHHHHHHHHHcC------CceEEeeccccccccCCCcHHHHHHHHHHHHhh-----------hhhcCC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMG------IEPVIMSAGELESERAGEPGKLIRERYRTASQV-----------VQNQGK 117 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g------~~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~-----------~~~~ga 117 (321)
.++||||||||||++|+++|++++ ..++.+++++.. +...+++.+...... ....+.
T Consensus 60 ~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDER------GISIVREKVKNFARLTVSKPSKHDLENYPCPP 133 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCC------CHHHHTTHHHHHHHSCCCCCCTTHHHHSCCCS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEcccccc------chHHHHHHHHHHhhhcccccchhhcccCCCCC
Confidence 389999999999999999999865 457778877642 234555554433321 000235
Q ss_pred ceEEEeecccccCCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccccCCCCCCCc
Q 020787 118 MSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRME 197 (321)
Q Consensus 118 PcILFIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpALlRpGRfD 197 (321)
+.||||||+|...+. ....|+..++.+ ..++.+|++||.++.++++|++ |+.
T Consensus 134 ~~vliiDE~~~l~~~------------~~~~Ll~~le~~--------------~~~~~~il~~~~~~~l~~~l~s--R~~ 185 (353)
T 1sxj_D 134 YKIIILDEADSMTAD------------AQSALRRTMETY--------------SGVTRFCLICNYVTRIIDPLAS--QCS 185 (353)
T ss_dssp CEEEEETTGGGSCHH------------HHHHHHHHHHHT--------------TTTEEEEEEESCGGGSCHHHHH--HSE
T ss_pred ceEEEEECCCccCHH------------HHHHHHHHHHhc--------------CCCceEEEEeCchhhCcchhhc--cCc
Confidence 679999999987531 123455555521 2357788899999999999988 776
Q ss_pred ceec-CCCHHHHHHHHHHHhhcCC--CCHHHHHHhhhCCCC
Q 020787 198 KFYW-QPNLEDILNIVHRMYEKDG--ITKDEVGSIVKTFPN 235 (321)
Q Consensus 198 r~i~-~Pd~~~R~~Il~~~~~~~~--l~~~dl~~L~d~f~g 235 (321)
...+ .|+.++...+++..+...+ ++.+.+..|+....|
T Consensus 186 ~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G 226 (353)
T 1sxj_D 186 KFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAG 226 (353)
T ss_dssp EEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSS
T ss_pred eEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC
Confidence 5333 4789999999988876554 677777777765554
No 65
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.50 E-value=3.6e-14 Score=129.99 Aligned_cols=144 Identities=13% Similarity=0.178 Sum_probs=82.9
Q ss_pred hccccCCCCcHHHHHHHHHHHcCC-------ceEEeec------------------cccccccCCCcHHHH------HHH
Q 020787 56 LCIWGGKGQGKSFQTELIFQAMGI-------EPVIMSA------------------GELESERAGEPGKLI------RER 104 (321)
Q Consensus 56 LgL~GPPGcGKTllaravA~e~g~-------~~i~vs~------------------~eL~s~~~GEser~I------R~~ 104 (321)
++||||||||||++|+++|+.++- ++-.... ..++....|.++..+ +..
T Consensus 48 vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~ 127 (350)
T 1g8p_A 48 VLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVEMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGALDIERA 127 (350)
T ss_dssp EEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSGGGSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEECHHHH
T ss_pred EEEECCCCccHHHHHHHHHHhCccccccccccccccccccccchhhhhccccccCCCcccccCCCcchhhheeechhhhh
Confidence 899999999999999999999873 2110000 011111133333222 223
Q ss_pred HHHHHhhhh----hcCCceEEEeecccccCCCCCCCccchhhHHHHHHHHhhcCCC-CccccCccccccCCCCCccEEEe
Q 020787 105 YRTASQVVQ----NQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNP-TRVSIGQDWRESDITNRIPIIFT 179 (321)
Q Consensus 105 F~~A~~~~~----~~gaPcILFIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~-~~vql~g~~~~~~~~~~V~VIaa 179 (321)
|..+....+ ....++||||||||...+. +...|+..++.. ..+...|.... ...++.||+|
T Consensus 128 ~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~~------------~~~~Ll~~le~~~~~~~~~g~~~~--~~~~~~li~~ 193 (350)
T 1g8p_A 128 ISKGEKAFEPGLLARANRGYLYIDECNLLEDH------------IVDLLLDVAQSGENVVERDGLSIR--HPARFVLVGS 193 (350)
T ss_dssp HHHCGGGEECCHHHHHTTEEEEETTGGGSCHH------------HHHHHHHHHHHSEEEECCTTCCEE--EECCEEEEEE
T ss_pred hcCCceeecCceeeecCCCEEEEeChhhCCHH------------HHHHHHHHHhcCceEEEecceEEe--eCCceEEEEE
Confidence 333211100 0114799999999987431 233455555421 11122221111 1236888999
Q ss_pred eCCCC-CccccCCCCCCCcceecC--C-CHHHHHHHHHHH
Q 020787 180 GNDFS-TIYAPLIRDGRMEKFYWQ--P-NLEDILNIVHRM 215 (321)
Q Consensus 180 TNrp~-~LDpALlRpGRfDr~i~~--P-d~~~R~~Il~~~ 215 (321)
||..+ .++++|++ ||+..+.+ | +.+.|.+|++..
T Consensus 194 ~n~~~~~l~~~L~~--R~~~~~~l~~~~~~~~~~~il~~~ 231 (350)
T 1g8p_A 194 GNPEEGDLRPQLLD--RFGLSVEVLSPRDVETRVEVIRRR 231 (350)
T ss_dssp ECSCSCCCCHHHHT--TCSEEEECCCCCSHHHHHHHHHHH
T ss_pred eCCCCCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHHHH
Confidence 99755 89999999 99986654 5 678888999764
No 66
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.50 E-value=8.2e-15 Score=121.46 Aligned_cols=99 Identities=13% Similarity=0.092 Sum_probs=72.9
Q ss_pred hccccCCCCcHHHHHHHHHHHc---CCceEEeeccccccccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeecccccCCC
Q 020787 56 LCIWGGKGQGKSFQTELIFQAM---GIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGR 132 (321)
Q Consensus 56 LgL~GPPGcGKTllaravA~e~---g~~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~~r 132 (321)
++||||||||||++|+++++.. +.+|+ ++++++.+. ..+...|..| ..++|||||||...+
T Consensus 27 vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~------~~~~~~~~~a--------~~g~l~ldei~~l~~- 90 (145)
T 3n70_A 27 VWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA------PQLNDFIALA--------QGGTLVLSHPEHLTR- 90 (145)
T ss_dssp EEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS------SCHHHHHHHH--------TTSCEEEECGGGSCH-
T ss_pred EEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc------hhhhcHHHHc--------CCcEEEEcChHHCCH-
Confidence 7899999999999999999987 78999 999988765 2345566655 368999999998743
Q ss_pred CCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccccCCCCCCCcc
Q 020787 133 FGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEK 198 (321)
Q Consensus 133 ~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpALlRpGRfDr 198 (321)
.++..|+..+.. ...++.||+|||++- ..+.+.|+|+.
T Consensus 91 -----------~~q~~Ll~~l~~--------------~~~~~~~I~~t~~~~---~~~~~~~~~~~ 128 (145)
T 3n70_A 91 -----------EQQYHLVQLQSQ--------------EHRPFRLIGIGDTSL---VELAASNHIIA 128 (145)
T ss_dssp -----------HHHHHHHHHHHS--------------SSCSSCEEEEESSCH---HHHHHHSCCCH
T ss_pred -----------HHHHHHHHHHhh--------------cCCCEEEEEECCcCH---HHHHHcCCCCH
Confidence 123445555531 124678999999852 24666777765
No 67
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.49 E-value=6.9e-14 Score=127.84 Aligned_cols=151 Identities=14% Similarity=0.242 Sum_probs=98.2
Q ss_pred HhccccCCCCcHHHHHHHHHHHc------CCceEEeeccccccc----------------cCCCcHHHHHHHHHHHHhhh
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM------GIEPVIMSAGELESE----------------RAGEPGKLIRERYRTASQVV 112 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~------g~~~i~vs~~eL~s~----------------~~GEser~IR~~F~~A~~~~ 112 (321)
.++||||||||||++++++++++ +..++.+++.+..+. ..|.+...+.+.+..+.
T Consensus 47 ~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l--- 123 (386)
T 2qby_A 47 NIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAV--- 123 (386)
T ss_dssp CEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHH---
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHH---
Confidence 68899999999999999999999 899999997643221 23433433333333222
Q ss_pred hhcCCceEEEeecccccCCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCC---CCcccc
Q 020787 113 QNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDF---STIYAP 189 (321)
Q Consensus 113 ~~~gaPcILFIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp---~~LDpA 189 (321)
+..+.|+||||||+|.+....+ +.+...|+..+++. ...++.+|++||++ +.+++.
T Consensus 124 ~~~~~~~vlilDE~~~l~~~~~--------~~~l~~l~~~~~~~-------------~~~~~~~I~~~~~~~~~~~~~~~ 182 (386)
T 2qby_A 124 RDYGSQVVIVLDEIDAFVKKYN--------DDILYKLSRINSEV-------------NKSKISFIGITNDVKFVDLLDPR 182 (386)
T ss_dssp HTCCSCEEEEEETHHHHHHSSC--------STHHHHHHHHHHSC-------------CC--EEEEEEESCGGGGGGCTTH
T ss_pred hccCCeEEEEEcChhhhhccCc--------CHHHHHHhhchhhc-------------CCCeEEEEEEECCCChHhhhCHH
Confidence 2245699999999999864321 12334455555420 13478899999988 467788
Q ss_pred CCCCCCCcc-eec--CCCHHHHHHHHHHHhhc----CCCCHHHHHHhhh
Q 020787 190 LIRDGRMEK-FYW--QPNLEDILNIVHRMYEK----DGITKDEVGSIVK 231 (321)
Q Consensus 190 LlRpGRfDr-~i~--~Pd~~~R~~Il~~~~~~----~~l~~~dl~~L~d 231 (321)
+.+ ||.. .+. .|+.++..+|++..+.. ..++.+.+..++.
T Consensus 183 ~~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~ 229 (386)
T 2qby_A 183 VKS--SLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAA 229 (386)
T ss_dssp HHH--TTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHH
T ss_pred Hhc--cCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHH
Confidence 777 6653 444 36899999999876542 3466655544443
No 68
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.49 E-value=9.3e-14 Score=128.08 Aligned_cols=152 Identities=13% Similarity=0.122 Sum_probs=103.1
Q ss_pred HhccccCCCCcHHHHHHHHHHHc----CCceEEeeccccccc----------------cCCCcHHHHHHHHHHHHhhhhh
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM----GIEPVIMSAGELESE----------------RAGEPGKLIRERYRTASQVVQN 114 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~----g~~~i~vs~~eL~s~----------------~~GEser~IR~~F~~A~~~~~~ 114 (321)
.++|+||||||||++++++++++ +..++.+++++..+. ..|.+...+.+.+..... .
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~---~ 122 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLR---E 122 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHH---H
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHh---h
Confidence 57899999999999999999999 778899987654421 123333333333333322 2
Q ss_pred cCCceEEEeecccccCCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCC---CCccccCC
Q 020787 115 QGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDF---STIYAPLI 191 (321)
Q Consensus 115 ~gaPcILFIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp---~~LDpALl 191 (321)
.+.|+||||||+|.+- ..+...|+.++.+. .. ....++.||++||++ +.+++++.
T Consensus 123 ~~~~~vlilDE~~~l~------------~~~~~~L~~~~~~~---------~~-~~~~~~~iI~~~~~~~~~~~l~~~~~ 180 (389)
T 1fnn_A 123 RDLYMFLVLDDAFNLA------------PDILSTFIRLGQEA---------DK-LGAFRIALVIVGHNDAVLNNLDPSTR 180 (389)
T ss_dssp TTCCEEEEEETGGGSC------------HHHHHHHHHHTTCH---------HH-HSSCCEEEEEEESSTHHHHTSCHHHH
T ss_pred cCCeEEEEEECccccc------------hHHHHHHHHHHHhC---------CC-CCcCCEEEEEEECCchHHHHhCHHhh
Confidence 4679999999999981 12344566665521 00 001478999999999 67888776
Q ss_pred CCCCCcc-eecC--CCHHHHHHHHHHHhhc----CCCCHHHHHHhhhCC
Q 020787 192 RDGRMEK-FYWQ--PNLEDILNIVHRMYEK----DGITKDEVGSIVKTF 233 (321)
Q Consensus 192 RpGRfDr-~i~~--Pd~~~R~~Il~~~~~~----~~l~~~dl~~L~d~f 233 (321)
+ ||.. .+.+ ++.++..+|++..+.. ..++.+.+..++...
T Consensus 181 ~--r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~ 227 (389)
T 1fnn_A 181 G--IMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADIT 227 (389)
T ss_dssp H--HHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHH
T ss_pred h--cCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHH
Confidence 6 7764 4443 5888999999876653 457877777777655
No 69
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.49 E-value=9.9e-15 Score=163.61 Aligned_cols=111 Identities=13% Similarity=0.092 Sum_probs=83.5
Q ss_pred hccccCCCCcHHHHHHHHHHHcCCc-----eEEeec--cccc--------cccCCC----cHHHHHHHHHHHHhhhhhcC
Q 020787 56 LCIWGGKGQGKSFQTELIFQAMGIE-----PVIMSA--GELE--------SERAGE----PGKLIRERYRTASQVVQNQG 116 (321)
Q Consensus 56 LgL~GPPGcGKTllaravA~e~g~~-----~i~vs~--~eL~--------s~~~GE----ser~IR~~F~~A~~~~~~~g 116 (321)
.+||||||||||++|+++|.+...+ ||.+.. .+++ ++|+|| +|+.||.+|..|++.
T Consensus 1085 ~l~~G~~g~GKT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~----- 1159 (1706)
T 3cmw_A 1085 VEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSG----- 1159 (1706)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHT-----
T ss_pred EEEEcCCCCChHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhc-----
Confidence 5699999999999999999988766 666655 4455 899999 999999999999855
Q ss_pred CceEEEeecccccCCCC---CCC---ccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCC
Q 020787 117 KMSCLMINDIDAGLGRF---GNT---QMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFST 185 (321)
Q Consensus 117 aPcILFIDEIDAg~~r~---~~t---~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~ 185 (321)
+||+||||||||+++++ +.. +..+. .++..++|..+|+. .+ ..+|.|| +||+.-+
T Consensus 1160 ~~~~i~~d~~~al~~~~~~~g~~~~~~~~~~-~r~~~q~l~~~~~~-----------~~-~~~v~v~-~~n~~~~ 1220 (1706)
T 3cmw_A 1160 AVDVIVVDSVAALTPKAEIEGEIGDSHMGLA-ARMMSQAMRKLAGN-----------LK-QSNTLLI-FINQIRM 1220 (1706)
T ss_dssp CCSEEEESCGGGCCCHHHHHSCTTCCCTTHH-HHHHHHHHHHHHHH-----------HH-HTTCEEE-EEECEEE
T ss_pred CCeEEEeCchHhcCcccccccccccccccHH-HHHHHHHHHHHHhh-----------hc-cCCeEEE-Eeccccc
Confidence 89999999999999983 211 11232 34566777777731 11 3578666 8888643
No 70
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.49 E-value=1.8e-13 Score=128.08 Aligned_cols=157 Identities=14% Similarity=0.113 Sum_probs=103.5
Q ss_pred hHhccccCCCCcHHHHHHHHHHHcCCceEEeeccccccccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeecccccCCCC
Q 020787 54 ASLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRF 133 (321)
Q Consensus 54 ~iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~~r~ 133 (321)
+.++||||||||||++++++|+++++++...+++.++. .+.++..+.. ..+.+|+||||+|...+
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~------~~~l~~~~~~-------~~~~~v~~iDE~~~l~~-- 116 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK------QGDMAAILTS-------LERGDVLFIDEIHRLNK-- 116 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCS------HHHHHHHHHH-------CCTTCEEEEETGGGCCH--
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcC------HHHHHHHHHH-------ccCCCEEEEcchhhcCH--
Confidence 46899999999999999999999999988888765543 3344444432 12578999999998753
Q ss_pred CCCccchhhHHHHHHHHhhcCCCC-ccccCcccccc---CCCCCccEEEeeCCCCCccccCCCCCCCcceec--CCCHHH
Q 020787 134 GNTQMTVNNQIVVGTLMNLSDNPT-RVSIGQDWRES---DITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYW--QPNLED 207 (321)
Q Consensus 134 ~~t~~~v~~q~V~~tLl~llD~~~-~vql~g~~~~~---~~~~~V~VIaaTNrp~~LDpALlRpGRfDr~i~--~Pd~~~ 207 (321)
++ + ..|+..+.... .+.++...... ...+.+.++.+||++..|++++++ ||...+. .|+.++
T Consensus 117 -----~~--~---e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~~~~~Ls~~l~s--R~~l~~~Ld~~~~~~ 184 (334)
T 1in4_A 117 -----AV--E---ELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRS--RFGIILELDFYTVKE 184 (334)
T ss_dssp -----HH--H---HHHHHHHHTSCCCC---------------CCCEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHH
T ss_pred -----HH--H---HHHHHHHHhcccceeeccCcccccccccCCCeEEEEecCCcccCCHHHHH--hcCceeeCCCCCHHH
Confidence 11 1 12222222110 00000000000 012357778899999999999998 8875444 489999
Q ss_pred HHHHHHHHhhcC--CCCHHHHHHhhhCCCCCc
Q 020787 208 ILNIVHRMYEKD--GITKDEVGSIVKTFPNQA 237 (321)
Q Consensus 208 R~~Il~~~~~~~--~l~~~dl~~L~d~f~gq~ 237 (321)
+.+||+.+.+.. .++.+.+..|++...|-+
T Consensus 185 l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G~~ 216 (334)
T 1in4_A 185 LKEIIKRAASLMDVEIEDAAAEMIAKRSRGTP 216 (334)
T ss_dssp HHHHHHHHHHHTTCCBCHHHHHHHHHTSTTCH
T ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHHhcCCCh
Confidence 999998776644 456778888888776643
No 71
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.47 E-value=4.9e-15 Score=122.76 Aligned_cols=98 Identities=12% Similarity=-0.000 Sum_probs=70.6
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeeccccccccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeecccccCCCCC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG 134 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~~r~~ 134 (321)
-++||||||||||++|++++++++ +|+.++++++.+.+ ++..|+.| ..++|||||||...+
T Consensus 29 ~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~~-------~~~~~~~a--------~~~~l~lDei~~l~~--- 89 (143)
T 3co5_A 29 PVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLIDM-------PMELLQKA--------EGGVLYVGDIAQYSR--- 89 (143)
T ss_dssp CEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHHC-------HHHHHHHT--------TTSEEEEEECTTCCH---
T ss_pred cEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChHh-------hhhHHHhC--------CCCeEEEeChHHCCH---
Confidence 378999999999999999999998 99999999887654 56666655 368999999998743
Q ss_pred CCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccccCCCCCCCcc
Q 020787 135 NTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEK 198 (321)
Q Consensus 135 ~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpALlRpGRfDr 198 (321)
..+..|+..++.- ...++.||+|||++. ..+ ++| |++
T Consensus 90 ---------~~q~~Ll~~l~~~-------------~~~~~~iI~~tn~~~---~~~-~~~-~~~ 126 (143)
T 3co5_A 90 ---------NIQTGITFIIGKA-------------ERCRVRVIASCSYAA---GSD-GIS-CEE 126 (143)
T ss_dssp ---------HHHHHHHHHHHHH-------------TTTTCEEEEEEEECT---TTC---C-HHH
T ss_pred ---------HHHHHHHHHHHhC-------------CCCCEEEEEecCCCH---HHH-HhC-ccH
Confidence 1233455555510 024688999999862 234 667 654
No 72
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.47 E-value=2.9e-14 Score=127.42 Aligned_cols=134 Identities=13% Similarity=0.207 Sum_probs=78.1
Q ss_pred HhccccCCCCcHHHHHHHHHHHcC---CceEEeeccccccc-----cCCCcHHHHHHHHHHHHh----hhhhcCCceEEE
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMG---IEPVIMSAGELESE-----RAGEPGKLIRERYRTASQ----VVQNQGKMSCLM 122 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g---~~~i~vs~~eL~s~-----~~GEser~IR~~F~~A~~----~~~~~gaPcILF 122 (321)
-++||||||||||++|+++++.+. .+|+.++++++... ..|... ..|..+.. ... ....++||
T Consensus 31 ~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~~~~~~l~g~~~----~~~~g~~~~~~~~l~-~a~~~~l~ 105 (265)
T 2bjv_A 31 PVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEA----GAFTGAQKRHPGRFE-RADGGTLF 105 (265)
T ss_dssp CEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHHHHHHHHHCCC-------------CCCCHHH-HTTTSEEE
T ss_pred CEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChhHHHHHhcCCcc----cccccccccccchhh-hcCCcEEE
Confidence 578999999999999999999885 68999999876321 112110 01111110 000 11468999
Q ss_pred eecccccCCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCC-------CCccccCCCCCC
Q 020787 123 INDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDF-------STIYAPLIRDGR 195 (321)
Q Consensus 123 IDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp-------~~LDpALlRpGR 195 (321)
|||||...+ .++..|+..++....-.+++. .....++.||+|||++ ..+.++|.. |
T Consensus 106 lDEi~~l~~------------~~q~~Ll~~l~~~~~~~~g~~---~~~~~~~~iI~atn~~~~~~~~~~~~~~~L~~--R 168 (265)
T 2bjv_A 106 LDELATAPM------------MVQEKLLRVIEYGELERVGGS---QPLQVNVRLVCATNADLPAMVNEGTFRADLLD--A 168 (265)
T ss_dssp EESGGGSCH------------HHHHHHHHHHHHCEECCCCC-----CEECCCEEEEEESSCHHHHHHHTSSCHHHHH--H
T ss_pred EechHhcCH------------HHHHHHHHHHHhCCeecCCCc---ccccCCeEEEEecCcCHHHHHHcCCccHHHHH--h
Confidence 999998753 133456666653211111111 1112468899999985 234555555 6
Q ss_pred Ccc-eecCCCHHHHHH
Q 020787 196 MEK-FYWQPNLEDILN 210 (321)
Q Consensus 196 fDr-~i~~Pd~~~R~~ 210 (321)
|+. .+.+|...+|.+
T Consensus 169 l~~~~i~lp~L~~R~~ 184 (265)
T 2bjv_A 169 LAFDVVQLPPLRERES 184 (265)
T ss_dssp HCSEEEECCCGGGCHH
T ss_pred hcCcEEeCCChhhhhH
Confidence 653 456787777644
No 73
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.46 E-value=2.1e-13 Score=142.71 Aligned_cols=153 Identities=16% Similarity=0.168 Sum_probs=99.1
Q ss_pred HhccccCCCCcHHHHHHHHHHHc---CCceEEeeccccccc------------cCCCcHHHHHHHHHHHHhhhhhcCCce
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM---GIEPVIMSAGELESE------------RAGEPGKLIRERYRTASQVVQNQGKMS 119 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~---g~~~i~vs~~eL~s~------------~~GEser~IR~~F~~A~~~~~~~gaPc 119 (321)
.++|+||||||||++|+++|..+ +.+|+.++++++..+ |+|..+ .+ .|..|... ..++
T Consensus 590 ~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~s~l~g~~~~~~G~~~--~g-~l~~~~~~----~~~~ 662 (854)
T 1qvr_A 590 SFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEE--GG-QLTEAVRR----RPYS 662 (854)
T ss_dssp EEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGGGGC-----------------CHHHHHHH----CSSE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhHHHHHcCCCCCCcCccc--cc-hHHHHHHh----CCCe
Confidence 47899999999999999999999 889999999887654 334333 11 23333222 2579
Q ss_pred EEEeecccccCCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCC----------------
Q 020787 120 CLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDF---------------- 183 (321)
Q Consensus 120 ILFIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp---------------- 183 (321)
||||||||..- ..+...|+.++|+.....-.| ...+ -.++.||+|||..
T Consensus 663 vl~lDEi~~l~------------~~~~~~Ll~~l~~~~~~~~~g--~~vd-~~~~iiI~tsn~~~~~~~~~~~~~~~~~~ 727 (854)
T 1qvr_A 663 VILFDEIEKAH------------PDVFNILLQILDDGRLTDSHG--RTVD-FRNTVIILTSNLGSPLILEGLQKGWPYER 727 (854)
T ss_dssp EEEESSGGGSC------------HHHHHHHHHHHTTTEECCSSS--CCEE-CTTEEEEEECCTTHHHHHHHHHTTCCHHH
T ss_pred EEEEecccccC------------HHHHHHHHHHhccCceECCCC--CEec-cCCeEEEEecCcChHHHhhhcccccchHH
Confidence 99999999752 246667888888542110000 1111 2467799999973
Q ss_pred ----------CCccccCCCCCCCcceec-C-CCHHHHHHHHHHHhhc-----------CCCCHHHHHHhhh
Q 020787 184 ----------STIYAPLIRDGRMEKFYW-Q-PNLEDILNIVHRMYEK-----------DGITKDEVGSIVK 231 (321)
Q Consensus 184 ----------~~LDpALlRpGRfDr~i~-~-Pd~~~R~~Il~~~~~~-----------~~l~~~dl~~L~d 231 (321)
..+.|+|+ .|||..+. . |+.++...|++.+++. ..++.+.+..|+.
T Consensus 728 l~~~v~~~~~~~f~~~l~--~Rl~~~i~~~pl~~edi~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~L~~ 796 (854)
T 1qvr_A 728 IRDEVFKVLQQHFRPEFL--NRLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAEKRISLELTEAAKDFLAE 796 (854)
T ss_dssp HHHHHHHHHHTTSCHHHH--HTCSBCCBCCCCCHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCHHHH--HhcCeEEeCCCCCHHHHHHHHHHHHHHHHHHHHhCCceEEECHHHHHHHHH
Confidence 12334444 59987654 3 6889999999766541 2367777777775
No 74
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.45 E-value=5.6e-14 Score=162.81 Aligned_cols=142 Identities=17% Similarity=0.184 Sum_probs=93.7
Q ss_pred HhccccCCCCcHHHHH-HHHHHHcCCceEEeeccccccccCCCcHHHHHHHHHHHHhhhh----------hcCCceEEEe
Q 020787 55 SLCIWGGKGQGKSFQT-ELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQ----------NQGKMSCLMI 123 (321)
Q Consensus 55 iLgL~GPPGcGKTlla-ravA~e~g~~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~----------~~gaPcILFI 123 (321)
-++|+||||||||++| +++++..+..++.++.+...+ ...+.+.++...+..+ ..+++|||||
T Consensus 1269 ~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts------~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~VlFi 1342 (2695)
T 4akg_A 1269 GIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTT------TEHILSALHRHTNYVTTSKGLTLLPKSDIKNLVLFC 1342 (2695)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCC------HHHHHHHHHHHBCCEEETTTEEEEEBSSSSCEEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCC------HHHHHHHHHHHhhhccccCCccccCCCCCceEEEEe
Confidence 6799999999999999 555555577888888776553 3455666655432210 0246799999
Q ss_pred ecccccCCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccC----CCCCccEEEeeCCCC-----CccccCCCCC
Q 020787 124 NDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESD----ITNRIPIIFTGNDFS-----TIYAPLIRDG 194 (321)
Q Consensus 124 DEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~----~~~~V~VIaaTNrp~-----~LDpALlRpG 194 (321)
||||.-....-++| .+...|-.++|. +|-|+..+ ...++.+|+|||.|. .|+|+|+|
T Consensus 1343 DEinmp~~d~yg~q------~~lelLRq~le~------gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllR-- 1408 (2695)
T 4akg_A 1343 DEINLPKLDKYGSQ------NVVLFLRQLMEK------QGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTR-- 1408 (2695)
T ss_dssp ETTTCSCCCSSSCC------HHHHHHHHHHHT------SSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHT--
T ss_pred cccccccccccCch------hHHHHHHHHHhc------CCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhh--
Confidence 99998443222343 233333334442 12222111 024688999999995 89999999
Q ss_pred CCcceecC--CCHHHHHHHHHHHhh
Q 020787 195 RMEKFYWQ--PNLEDILNIVHRMYE 217 (321)
Q Consensus 195 RfDr~i~~--Pd~~~R~~Il~~~~~ 217 (321)
|| ..+++ |+.+++..|++.+++
T Consensus 1409 rf-~vi~i~~P~~~~l~~I~~~il~ 1432 (2695)
T 4akg_A 1409 HA-AILYLGYPSGKSLSQIYEIYYK 1432 (2695)
T ss_dssp TE-EEEECCCCTTTHHHHHHHHHHH
T ss_pred ee-eEEEeCCCCHHHHHHHHHHHHH
Confidence 88 44553 999999999987765
No 75
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.45 E-value=1.3e-13 Score=124.16 Aligned_cols=146 Identities=18% Similarity=0.226 Sum_probs=99.7
Q ss_pred hccccCCCCcHHHHHHHHHHHcC-----CceEEeeccccccccCCCcHHHHHHHHHHHHhhhh-hcCCceEEEeeccccc
Q 020787 56 LCIWGGKGQGKSFQTELIFQAMG-----IEPVIMSAGELESERAGEPGKLIRERYRTASQVVQ-NQGKMSCLMINDIDAG 129 (321)
Q Consensus 56 LgL~GPPGcGKTllaravA~e~g-----~~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~-~~gaPcILFIDEIDAg 129 (321)
++||||||||||++|+++|+++. ..++.+++++... ...+++.......... ..+.++||||||+|..
T Consensus 49 ~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l 122 (327)
T 1iqp_A 49 LLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERG------INVIREKVKEFARTKPIGGASFKIIFLDEADAL 122 (327)
T ss_dssp EEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHH------HHTTHHHHHHHHHSCCGGGCSCEEEEEETGGGS
T ss_pred EEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCc------hHHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcC
Confidence 78999999999999999999964 3477777765421 2334444333322110 1257999999999987
Q ss_pred CCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccccCCCCCCCcceec-CCCHHHH
Q 020787 130 LGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYW-QPNLEDI 208 (321)
Q Consensus 130 ~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpALlRpGRfDr~i~-~Pd~~~R 208 (321)
.+. ....|+..++.+ ..++.+|++||.++.+++++.+ |+....+ .|+.++.
T Consensus 123 ~~~------------~~~~L~~~le~~--------------~~~~~~i~~~~~~~~l~~~l~s--r~~~~~~~~l~~~~~ 174 (327)
T 1iqp_A 123 TQD------------AQQALRRTMEMF--------------SSNVRFILSCNYSSKIIEPIQS--RCAIFRFRPLRDEDI 174 (327)
T ss_dssp CHH------------HHHHHHHHHHHT--------------TTTEEEEEEESCGGGSCHHHHH--TEEEEECCCCCHHHH
T ss_pred CHH------------HHHHHHHHHHhc--------------CCCCeEEEEeCCccccCHHHHh--hCcEEEecCCCHHHH
Confidence 421 123455555521 2468899999999999999887 6664333 4788999
Q ss_pred HHHHHHHhhcCC--CCHHHHHHhhhCCCC
Q 020787 209 LNIVHRMYEKDG--ITKDEVGSIVKTFPN 235 (321)
Q Consensus 209 ~~Il~~~~~~~~--l~~~dl~~L~d~f~g 235 (321)
..+++.+++..+ ++.+.+..|+...+|
T Consensus 175 ~~~l~~~~~~~~~~~~~~~~~~l~~~~~g 203 (327)
T 1iqp_A 175 AKRLRYIAENEGLELTEEGLQAILYIAEG 203 (327)
T ss_dssp HHHHHHHHHTTTCEECHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHCCC
Confidence 999988877655 567777777765555
No 76
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.43 E-value=1.8e-13 Score=123.06 Aligned_cols=147 Identities=17% Similarity=0.199 Sum_probs=103.2
Q ss_pred hccccCCCCcHHHHHHHHHHHc-----CCceEEeeccccccccCCCcHHHHHHHHHHHHhhh-hh-cCCceEEEeecccc
Q 020787 56 LCIWGGKGQGKSFQTELIFQAM-----GIEPVIMSAGELESERAGEPGKLIRERYRTASQVV-QN-QGKMSCLMINDIDA 128 (321)
Q Consensus 56 LgL~GPPGcGKTllaravA~e~-----g~~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~-~~-~gaPcILFIDEIDA 128 (321)
++||||||||||++|+++|+++ +..++.+++++.. +...+|++++...... .. .+.++||||||+|.
T Consensus 45 ~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~------~~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~ 118 (323)
T 1sxj_B 45 MIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDR------GIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADS 118 (323)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCC------SHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGG
T ss_pred EEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCcccc------ChHHHHHHHHHHHhccccCCCCCceEEEEECccc
Confidence 7899999999999999999996 4567888876532 2456777776654211 01 23599999999998
Q ss_pred cCCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccccCCCCCCCccee-cCCCHHH
Q 020787 129 GLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFY-WQPNLED 207 (321)
Q Consensus 129 g~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpALlRpGRfDr~i-~~Pd~~~ 207 (321)
.... ....|+..++.+ ..++.+|++||.++.++++++. |+...- ..|+.++
T Consensus 119 l~~~------------~~~~L~~~le~~--------------~~~~~~il~~~~~~~l~~~l~s--r~~~i~~~~~~~~~ 170 (323)
T 1sxj_B 119 MTAG------------AQQALRRTMELY--------------SNSTRFAFACNQSNKIIEPLQS--QCAILRYSKLSDED 170 (323)
T ss_dssp SCHH------------HHHTTHHHHHHT--------------TTTEEEEEEESCGGGSCHHHHT--TSEEEECCCCCHHH
T ss_pred CCHH------------HHHHHHHHHhcc--------------CCCceEEEEeCChhhchhHHHh--hceEEeecCCCHHH
Confidence 7421 112344444421 2467889999999999999987 554432 2479999
Q ss_pred HHHHHHHHhhcC--CCCHHHHHHhhhCCCCC
Q 020787 208 ILNIVHRMYEKD--GITKDEVGSIVKTFPNQ 236 (321)
Q Consensus 208 R~~Il~~~~~~~--~l~~~dl~~L~d~f~gq 236 (321)
..++++.+++.. .++.+.+..|+....|-
T Consensus 171 ~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~ 201 (323)
T 1sxj_B 171 VLKRLLQIIKLEDVKYTNDGLEAIIFTAEGD 201 (323)
T ss_dssp HHHHHHHHHHHHTCCBCHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC
Confidence 999998877644 46677777777666554
No 77
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.42 E-value=3e-14 Score=142.85 Aligned_cols=141 Identities=13% Similarity=0.117 Sum_probs=82.7
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCC--ceEEee-----ccccccccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeeccc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGI--EPVIMS-----AGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDID 127 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~--~~i~vs-----~~eL~s~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDEID 127 (321)
-++|+||||||||++|+++|+.++. +|..+. .++|+..+.+...+. ...|..+..-. ...++|||||||+
T Consensus 43 ~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G~~~~~~~~~-~g~~~~~~~g~--l~~~~IL~IDEI~ 119 (500)
T 3nbx_X 43 SVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKD-EGRYERLTSGY--LPEAEIVFLDEIW 119 (500)
T ss_dssp EEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHCCBC-----------CBCCTTS--GGGCSEEEEESGG
T ss_pred eeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcCcccHHHHhh-chhHHhhhccC--CCcceeeeHHhHh
Confidence 6889999999999999999999854 333332 356665555543322 12333222110 0158899999997
Q ss_pred ccCCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCC---ccccCCCCCCCcceecC--
Q 020787 128 AGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFST---IYAPLIRDGRMEKFYWQ-- 202 (321)
Q Consensus 128 Ag~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~---LDpALlRpGRfDr~i~~-- 202 (321)
...+ .+...|++.|+.- .+.++|.-.. .+..++|+|||++.. ..+||++ ||...+++
T Consensus 120 r~~~------------~~q~~LL~~lee~-~v~i~G~~~~---~~~~~iI~ATN~lpe~~~~~~aLld--RF~~~i~v~~ 181 (500)
T 3nbx_X 120 KAGP------------AILNTLLTAINER-QFRNGAHVEK---IPMRLLVAASNELPEADSSLEALYD--RMLIRLWLDK 181 (500)
T ss_dssp GCCH------------HHHHHHHHHHHSS-EEECSSSEEE---CCCCEEEEEESSCCCTTCTTHHHHT--TCCEEEECCS
T ss_pred hhcH------------HHHHHHHHHHHHH-hccCCCCcCC---cchhhhhhccccCCCccccHHHHHH--HHHHHHHHHH
Confidence 5421 3455677777632 2344442111 222346889997543 3347777 88777775
Q ss_pred CCH-HHHHHHHHHHh
Q 020787 203 PNL-EDILNIVHRMY 216 (321)
Q Consensus 203 Pd~-~~R~~Il~~~~ 216 (321)
|+. ++|..|++...
T Consensus 182 p~~~ee~~~IL~~~~ 196 (500)
T 3nbx_X 182 VQDKANFRSMLTSQQ 196 (500)
T ss_dssp CCCHHHHHHHHTCCC
T ss_pred hhhhhhHHHHHhccc
Confidence 554 77888997554
No 78
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.42 E-value=1.4e-13 Score=128.21 Aligned_cols=150 Identities=16% Similarity=0.264 Sum_probs=92.5
Q ss_pred HhccccCCCCcHHHHHHHHHHHc---CCceEEeecccccc-----cc--------CCCcHHHHHHHHHHHHhhhhhcCCc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM---GIEPVIMSAGELES-----ER--------AGEPGKLIRERYRTASQVVQNQGKM 118 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~---g~~~i~vs~~eL~s-----~~--------~GEser~IR~~F~~A~~~~~~~gaP 118 (321)
-++|+||||||||++|+++++.. +.+|+.++++.+-+ .. .|... .....|+.| ..
T Consensus 27 ~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~~lfg~~~g~~tg~~~-~~~g~~~~a--------~~ 97 (304)
T 1ojl_A 27 TVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLESELFGHEKGAFTGADK-RREGRFVEA--------DG 97 (304)
T ss_dssp CEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHHHHTCCCSSCCC---C-CCCCHHHHH--------TT
T ss_pred cEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHHHhcCccccccCchhh-hhcCHHHhc--------CC
Confidence 57899999999999999999965 67899999877642 11 12111 122345444 35
Q ss_pred eEEEeecccccCCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccccCCCCCCCcc
Q 020787 119 SCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEK 198 (321)
Q Consensus 119 cILFIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpALlRpGRfDr 198 (321)
++|||||||.... .++..|+..++......+++. .....++.||+|||++ ...+++.|+|+.
T Consensus 98 g~L~LDEi~~l~~------------~~q~~Ll~~l~~~~~~~~g~~---~~~~~~~riI~atn~~---l~~~v~~g~fr~ 159 (304)
T 1ojl_A 98 GTLFLDEIGDISP------------LMQVRLLRAIQEREVQRVGSN---QTISVDVRLIAATHRD---LAEEVSAGRFRQ 159 (304)
T ss_dssp SEEEEESCTTCCH------------HHHHHHHHHHHSSBCCBTTBC---CCCBCCCEEEEEESSC---HHHHHHHTSSCH
T ss_pred CEEEEeccccCCH------------HHHHHHHHHHhcCEeeecCCc---ccccCCeEEEEecCcc---HHHHHHhCCcHH
Confidence 8999999999743 233456666664322223321 1123468899999986 234566777754
Q ss_pred ---------eecCCCHHHHHH----HHHHHhh----c-----CCCCHHHHHHhhh
Q 020787 199 ---------FYWQPNLEDILN----IVHRMYE----K-----DGITKDEVGSIVK 231 (321)
Q Consensus 199 ---------~i~~Pd~~~R~~----Il~~~~~----~-----~~l~~~dl~~L~d 231 (321)
.+.+|...+|.+ +++.+++ . ..++.+.+..|..
T Consensus 160 ~L~~Rl~~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~~L~~ 214 (304)
T 1ojl_A 160 DLYYRLNVVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMDLLIH 214 (304)
T ss_dssp HHHHHHSSEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHH
T ss_pred HHHhhcCeeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHHHHHHHHc
Confidence 134687666544 4433222 1 2467777777765
No 79
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.42 E-value=3.8e-13 Score=123.91 Aligned_cols=147 Identities=12% Similarity=0.221 Sum_probs=100.3
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCc------------------------eEEeeccccccccCCCcHHHHHHHHHHHHh
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIE------------------------PVIMSAGELESERAGEPGKLIRERYRTASQ 110 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~------------------------~i~vs~~eL~s~~~GEser~IR~~F~~A~~ 110 (321)
.++||||||||||++|+++|+.+++. ++.++++. ..+...+|++++.+..
T Consensus 40 ~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~ 113 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQY 113 (373)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHHHTSCCSSCEEEETTC------SCCSSCHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhccCCCceEEecccc------cCCHHHHHHHHHHHhh
Confidence 46899999999999999999998762 33333321 0122346777776643
Q ss_pred hhhhcCCceEEEeecccccCCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccccC
Q 020787 111 VVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPL 190 (321)
Q Consensus 111 ~~~~~gaPcILFIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpAL 190 (321)
.. ..+.+.||||||+|.... .....|+..+++| ..++.+|++||+++.+++++
T Consensus 114 ~~-~~~~~~vliiDe~~~l~~------------~~~~~Ll~~le~~--------------~~~~~~Il~~~~~~~l~~~l 166 (373)
T 1jr3_A 114 AP-ARGRFKVYLIDEVHMLSR------------HSFNALLKTLEEP--------------PEHVKFLLATTDPQKLPVTI 166 (373)
T ss_dssp CC-SSSSSEEEEEECGGGSCH------------HHHHHHHHHHHSC--------------CSSEEEEEEESCGGGSCHHH
T ss_pred cc-ccCCeEEEEEECcchhcH------------HHHHHHHHHHhcC--------------CCceEEEEEeCChHhCcHHH
Confidence 21 145789999999998732 1123455555532 24688899999999999998
Q ss_pred CCCCCCccee-cCCCHHHHHHHHHHHhhcCC--CCHHHHHHhhhCCCCC
Q 020787 191 IRDGRMEKFY-WQPNLEDILNIVHRMYEKDG--ITKDEVGSIVKTFPNQ 236 (321)
Q Consensus 191 lRpGRfDr~i-~~Pd~~~R~~Il~~~~~~~~--l~~~dl~~L~d~f~gq 236 (321)
+. |+...- ..|+.++..++++.+++..+ ++.+.+..|+...+|-
T Consensus 167 ~s--r~~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~G~ 213 (373)
T 1jr3_A 167 LS--RCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGS 213 (373)
T ss_dssp HT--TSEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSSSC
T ss_pred Hh--heeEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHCCCC
Confidence 87 553322 34799999999988776544 5666677777666653
No 80
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.39 E-value=1.1e-13 Score=140.67 Aligned_cols=136 Identities=18% Similarity=0.165 Sum_probs=86.2
Q ss_pred hccccCCCCcHHHHHHHHHHHcCCceEEe----eccccccccC-----CCcHHHHHHHHHHHHhhhhhcCCceEEEeecc
Q 020787 56 LCIWGGKGQGKSFQTELIFQAMGIEPVIM----SAGELESERA-----GEPGKLIRERYRTASQVVQNQGKMSCLMINDI 126 (321)
Q Consensus 56 LgL~GPPGcGKTllaravA~e~g~~~i~v----s~~eL~s~~~-----GEser~IR~~F~~A~~~~~~~gaPcILFIDEI 126 (321)
++|+||||||||++|+++|+.++..+... +++++..... |+.... ...+..| ..+|||||||
T Consensus 330 vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~-~G~l~~A--------~~gil~IDEi 400 (595)
T 3f9v_A 330 ILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVVREKGTGEYYLE-AGALVLA--------DGGIAVIDEI 400 (595)
T ss_dssp EEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECSSGGGTSSCSEE-ECHHHHH--------SSSEECCTTT
T ss_pred eEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceeeecccccccccc-CCeeEec--------CCCcEEeehh
Confidence 89999999999999999999998655442 2233332222 111000 0011222 3589999999
Q ss_pred cccCCCCCCCccchhhHHHHHHHHhhcCCCCccccC--ccccccCCCCCccEEEeeCCCC-------------CccccCC
Q 020787 127 DAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIG--QDWRESDITNRIPIIFTGNDFS-------------TIYAPLI 191 (321)
Q Consensus 127 DAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~--g~~~~~~~~~~V~VIaaTNrp~-------------~LDpALl 191 (321)
|...+ .+...|++.|+.-+ +.+. |... ....++.||+|||.+. .|++||+
T Consensus 401 d~l~~------------~~q~~Ll~~le~~~-i~i~~~g~~~--~~~~~~~vIaatNp~~G~~~~~~~~~~ni~l~~aLl 465 (595)
T 3f9v_A 401 DKMRD------------EDRVAIHEAMEQQT-VSIAKAGIVA--KLNARAAVIAAGNPKFGRYISERPVSDNINLPPTIL 465 (595)
T ss_dssp TCCCS------------HHHHHHHHHHHSSS-EEEESSSSEE--EECCCCEEEEEECCTTCCSCTTSCSCTTTCSCSSSG
T ss_pred hhCCH------------hHhhhhHHHHhCCE-EEEecCCcEE--EecCceEEEEEcCCcCCccCcccCchhccCCCHHHH
Confidence 98643 23345777776432 2211 2111 1135788999999987 9999999
Q ss_pred CCCCCcceec---CCCHHHHHHHHHHHhhc
Q 020787 192 RDGRMEKFYW---QPNLEDILNIVHRMYEK 218 (321)
Q Consensus 192 RpGRfDr~i~---~Pd~~~R~~Il~~~~~~ 218 (321)
+ |||-.+. .|+.+ ...|.+.++..
T Consensus 466 ~--RFDl~~~~~~~~~~e-~~~i~~~il~~ 492 (595)
T 3f9v_A 466 S--RFDLIFILKDQPGEQ-DRELANYILDV 492 (595)
T ss_dssp G--GCSCCEEECCTTHHH-HHHHHHHHHTT
T ss_pred h--hCeEEEEeCCCCCHH-HHHHHHHHHHH
Confidence 9 9996443 37777 77788766653
No 81
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.34 E-value=2.5e-12 Score=118.39 Aligned_cols=147 Identities=18% Similarity=0.282 Sum_probs=93.1
Q ss_pred hccccCCCCcHHHHHHHHHHHcCC-----------------------------ceEEeeccccccccCCC-cHHHHHHHH
Q 020787 56 LCIWGGKGQGKSFQTELIFQAMGI-----------------------------EPVIMSAGELESERAGE-PGKLIRERY 105 (321)
Q Consensus 56 LgL~GPPGcGKTllaravA~e~g~-----------------------------~~i~vs~~eL~s~~~GE-ser~IR~~F 105 (321)
++|+||||||||++++++|+++-. .++.+.+++ .|. ....+|+..
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~i 113 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSD-----MGNNDRIVIQELL 113 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSSEEEECCC---------CCHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccceEEecHhh-----cCCcchHHHHHHH
Confidence 789999999999999999997521 122232221 111 112467776
Q ss_pred HHHHhhhhh---------cCCceEEEeecccccCCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccE
Q 020787 106 RTASQVVQN---------QGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPI 176 (321)
Q Consensus 106 ~~A~~~~~~---------~gaPcILFIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~V 176 (321)
..+.+.... .+.|.||+|||+|+.-+ .....|+..+..+ ..++.+
T Consensus 114 ~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~------------~~~~~L~~~le~~--------------~~~~~~ 167 (354)
T 1sxj_E 114 KEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTK------------DAQAALRRTMEKY--------------SKNIRL 167 (354)
T ss_dssp HHHTTTTC------------CCEEEEEECTTSSCH------------HHHHHHHHHHHHS--------------TTTEEE
T ss_pred HHHHHhccccccccccccCCCCeEEEEeCccccCH------------HHHHHHHHHHHhh--------------cCCCEE
Confidence 665432110 23788999999999421 1122344444421 236789
Q ss_pred EEeeCCCCCccccCCCCCCCcceec-CCCHHHHHHHHHHHhhcCC--CC-HHHHHHhhhCCCC
Q 020787 177 IFTGNDFSTIYAPLIRDGRMEKFYW-QPNLEDILNIVHRMYEKDG--IT-KDEVGSIVKTFPN 235 (321)
Q Consensus 177 IaaTNrp~~LDpALlRpGRfDr~i~-~Pd~~~R~~Il~~~~~~~~--l~-~~dl~~L~d~f~g 235 (321)
|.+||+++.+.|+++. |+-++-+ .|+.++..++|+.+.+..+ ++ .+.+..++....|
T Consensus 168 Il~t~~~~~l~~~l~s--R~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~G 228 (354)
T 1sxj_E 168 IMVCDSMSPIIAPIKS--QCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNG 228 (354)
T ss_dssp EEEESCSCSSCHHHHT--TSEEEECCCCCHHHHHHHHHHHHHHHTCEECCSHHHHHHHHHHTT
T ss_pred EEEeCCHHHHHHHHHh--hceEEecCCcCHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHcCC
Confidence 9999999999999887 6633323 4899999999998876554 45 6666666654444
No 82
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.30 E-value=1.6e-11 Score=114.95 Aligned_cols=146 Identities=12% Similarity=0.104 Sum_probs=99.5
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCc------------------------eEEeeccccccccCCCcHHHHHHHHHHHHh
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIE------------------------PVIMSAGELESERAGEPGKLIRERYRTASQ 110 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~------------------------~i~vs~~eL~s~~~GEser~IR~~F~~A~~ 110 (321)
.++||||||+|||++|+++|+.+.+. ++.+.+.+- + ..-+-..||++.+.+..
T Consensus 26 a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~-~--~~~~i~~ir~l~~~~~~ 102 (334)
T 1a5t_A 26 ALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKG-K--NTLGVDAVREVTEKLNE 102 (334)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTT-C--SSBCHHHHHHHHHHTTS
T ss_pred eEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEecccc-C--CCCCHHHHHHHHHHHhh
Confidence 57899999999999999999998753 233332210 0 11234568888887753
Q ss_pred hhhhcCCceEEEeecccccCCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccccC
Q 020787 111 VVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPL 190 (321)
Q Consensus 111 ~~~~~gaPcILFIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpAL 190 (321)
.. ..+...|++|||+|.... . ....|+..+..| ..++.+|.+||.++.|+|++
T Consensus 103 ~~-~~~~~kvviIdead~l~~-----------~-a~naLLk~lEep--------------~~~~~~Il~t~~~~~l~~ti 155 (334)
T 1a5t_A 103 HA-RLGGAKVVWVTDAALLTD-----------A-AANALLKTLEEP--------------PAETWFFLATREPERLLATL 155 (334)
T ss_dssp CC-TTSSCEEEEESCGGGBCH-----------H-HHHHHHHHHTSC--------------CTTEEEEEEESCGGGSCHHH
T ss_pred cc-ccCCcEEEEECchhhcCH-----------H-HHHHHHHHhcCC--------------CCCeEEEEEeCChHhCcHHH
Confidence 32 135789999999998742 1 123466666633 34788888999999999999
Q ss_pred CCCCCCcceec-CCCHHHHHHHHHHHhhcCCCCHHHHHHhhhCCCC
Q 020787 191 IRDGRMEKFYW-QPNLEDILNIVHRMYEKDGITKDEVGSIVKTFPN 235 (321)
Q Consensus 191 lRpGRfDr~i~-~Pd~~~R~~Il~~~~~~~~l~~~dl~~L~d~f~g 235 (321)
+. |.-++-+ .|+.++..++|+... .++.+.+..++....|
T Consensus 156 ~S--Rc~~~~~~~~~~~~~~~~L~~~~---~~~~~~~~~l~~~s~G 196 (334)
T 1a5t_A 156 RS--RCRLHYLAPPPEQYAVTWLSREV---TMSQDALLAALRLSAG 196 (334)
T ss_dssp HT--TSEEEECCCCCHHHHHHHHHHHC---CCCHHHHHHHHHHTTT
T ss_pred hh--cceeeeCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHcCC
Confidence 88 5544333 479999999887665 5666666666554444
No 83
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.25 E-value=1.6e-11 Score=114.08 Aligned_cols=142 Identities=12% Similarity=0.173 Sum_probs=93.8
Q ss_pred hccccCCCCcHHHHHHHHHHHcCC-----ceEEeeccccccccCCCcHHHHHHHHHHHHhhhh-hcCCceEEEeeccccc
Q 020787 56 LCIWGGKGQGKSFQTELIFQAMGI-----EPVIMSAGELESERAGEPGKLIRERYRTASQVVQ-NQGKMSCLMINDIDAG 129 (321)
Q Consensus 56 LgL~GPPGcGKTllaravA~e~g~-----~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~-~~gaPcILFIDEIDAg 129 (321)
++||||||||||++++++|+.+.. .++.+++++.. +-..+|+......+... ..+.+.|++|||+|..
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~------~~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l 122 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDR------GIDVVRNQIKDFASTRQIFSKGFKLIILDEADAM 122 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCC------SHHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGS
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcccc------cHHHHHHHHHHHHhhcccCCCCceEEEEeCCCCC
Confidence 799999999999999999999643 46667766531 23456665554432110 0134799999999987
Q ss_pred CCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccccCCCCCCCcceec-CCCHHHH
Q 020787 130 LGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYW-QPNLEDI 208 (321)
Q Consensus 130 ~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpALlRpGRfDr~i~-~Pd~~~R 208 (321)
... ....|+..+..| ...+.+|++||.++.++|+++. |+..+-+ .|+.++.
T Consensus 123 ~~~------------~~~~L~~~le~~--------------~~~~~~il~~n~~~~i~~~i~s--R~~~~~~~~l~~~~~ 174 (340)
T 1sxj_C 123 TNA------------AQNALRRVIERY--------------TKNTRFCVLANYAHKLTPALLS--QCTRFRFQPLPQEAI 174 (340)
T ss_dssp CHH------------HHHHHHHHHHHT--------------TTTEEEEEEESCGGGSCHHHHT--TSEEEECCCCCHHHH
T ss_pred CHH------------HHHHHHHHHhcC--------------CCCeEEEEEecCccccchhHHh--hceeEeccCCCHHHH
Confidence 421 112344444422 2457788899999999999988 6665433 3678888
Q ss_pred HHHHHHHhhcC--CCCHHHHHHhhh
Q 020787 209 LNIVHRMYEKD--GITKDEVGSIVK 231 (321)
Q Consensus 209 ~~Il~~~~~~~--~l~~~dl~~L~d 231 (321)
.++++.+++.. .++.+.+..++.
T Consensus 175 ~~~l~~~~~~~~~~i~~~~~~~i~~ 199 (340)
T 1sxj_C 175 ERRIANVLVHEKLKLSPNAEKALIE 199 (340)
T ss_dssp HHHHHHHHHTTTCCBCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 88888777544 355554444443
No 84
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.18 E-value=5.5e-11 Score=110.65 Aligned_cols=160 Identities=12% Similarity=0.117 Sum_probs=91.4
Q ss_pred Hhcc--ccCCCCcHHHHHHHHHHHc---------CCceEEeeccccccc----------------cCCCcHHHHHHHHHH
Q 020787 55 SLCI--WGGKGQGKSFQTELIFQAM---------GIEPVIMSAGELESE----------------RAGEPGKLIRERYRT 107 (321)
Q Consensus 55 iLgL--~GPPGcGKTllaravA~e~---------g~~~i~vs~~eL~s~----------------~~GEser~IR~~F~~ 107 (321)
.++| |||||||||++++++++++ +..++.+++.+..+. ..|.+...+.+.+..
T Consensus 52 ~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~ 131 (412)
T 1w5s_A 52 NMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVD 131 (412)
T ss_dssp EEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHH
T ss_pred EEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHH
Confidence 3456 9999999999999999887 566777876432111 013222222222222
Q ss_pred HHhhhhhcCCceEEEeecccccCCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCC---
Q 020787 108 ASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFS--- 184 (321)
Q Consensus 108 A~~~~~~~gaPcILFIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~--- 184 (321)
+. +..++|++|+|||+|.+...... ++.+...|+..+++. ..+ ....++.||+|||+++
T Consensus 132 ~l---~~~~~~~llvlDe~~~l~~~~~~------~~~~l~~l~~~~~~~---~~~------~~~~~v~lI~~~~~~~~~~ 193 (412)
T 1w5s_A 132 NL---YVENHYLLVILDEFQSMLSSPRI------AAEDLYTLLRVHEEI---PSR------DGVNRIGFLLVASDVRALS 193 (412)
T ss_dssp HH---HHHTCEEEEEEESTHHHHSCTTS------CHHHHHHHHTHHHHS---CCT------TSCCBEEEEEEEEETHHHH
T ss_pred HH---HhcCCeEEEEEeCHHHHhhccCc------chHHHHHHHHHHHhc---ccC------CCCceEEEEEEeccccHHH
Confidence 21 11457999999999997543111 122333344443310 000 0014688999998876
Q ss_pred Ccc---ccCCCCCCCcceecC--CCHHHHHHHHHHHhh----cCCCCHHHHHHhhhCCC
Q 020787 185 TIY---APLIRDGRMEKFYWQ--PNLEDILNIVHRMYE----KDGITKDEVGSIVKTFP 234 (321)
Q Consensus 185 ~LD---pALlRpGRfDr~i~~--Pd~~~R~~Il~~~~~----~~~l~~~dl~~L~d~f~ 234 (321)
.++ +.+.+ ||...+.+ ++.++..+|++..+. ...++.+.+..++....
T Consensus 194 ~l~~~~~~~~~--~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~ 250 (412)
T 1w5s_A 194 YMREKIPQVES--QIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYG 250 (412)
T ss_dssp HHHHHCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHC
T ss_pred HHhhhcchhhh--hcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHH
Confidence 344 55544 33333544 588899999975543 23466666666665554
No 85
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.18 E-value=2e-11 Score=103.12 Aligned_cols=65 Identities=18% Similarity=0.259 Sum_probs=47.0
Q ss_pred hHhccccCCCCcHHHHHHHHHHHc----CCceEEeeccccccccCCCcHHHHHHHHHH-----HHhhhhhcCCceEEEee
Q 020787 54 ASLCIWGGKGQGKSFQTELIFQAM----GIEPVIMSAGELESERAGEPGKLIRERYRT-----ASQVVQNQGKMSCLMIN 124 (321)
Q Consensus 54 ~iLgL~GPPGcGKTllaravA~e~----g~~~i~vs~~eL~s~~~GEser~IR~~F~~-----A~~~~~~~gaPcILFID 124 (321)
.+++|+||||||||++++++++.+ |...+.++..++.+.+. ..|.. +.+.. ..|.+|+||
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~---~~~~llilD 107 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFRLK--------HLMDEGKDTKFLKTV---LNSPVLVLD 107 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHHHH--------HHHHHTCCSHHHHHH---HTCSEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHH--------HHhcCchHHHHHHHh---cCCCEEEEe
Confidence 378999999999999999999887 77777888887764322 11111 11111 268999999
Q ss_pred ccccc
Q 020787 125 DIDAG 129 (321)
Q Consensus 125 EIDAg 129 (321)
|+++.
T Consensus 108 E~~~~ 112 (180)
T 3ec2_A 108 DLGSE 112 (180)
T ss_dssp TCSSS
T ss_pred CCCCC
Confidence 99864
No 86
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=99.13 E-value=4.1e-11 Score=116.34 Aligned_cols=112 Identities=10% Similarity=0.110 Sum_probs=74.8
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeeccccccccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeecccccCC-CC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLG-RF 133 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~~-r~ 133 (321)
+++|+||||||||++++++++..+..++.+..++ +. ..|..+ . .-+.+++|+||+|+.+. .+
T Consensus 171 ~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~--~~----------~~~~lg--~---~~q~~~~l~dd~~~~~~~~r 233 (377)
T 1svm_A 171 YWLFKGPIDSGKTTLAAALLELCGGKALNVNLPL--DR----------LNFELG--V---AIDQFLVVFEDVKGTGGESR 233 (377)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCT--TT----------HHHHHG--G---GTTCSCEEETTCCCSTTTTT
T ss_pred EEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccc--hh----------HHHHHH--H---hcchhHHHHHHHHHHHHHHh
Confidence 7899999999999999999999887766544332 10 011111 1 12567889999999875 33
Q ss_pred C-CCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccccCCCCCCCcceecCCC
Q 020787 134 G-NTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPN 204 (321)
Q Consensus 134 ~-~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpALlRpGRfDr~i~~Pd 204 (321)
+ ..+.... ....+.+.+|| .+.|+++||+++.+ ++|+||||+|..++.+.
T Consensus 234 ~l~~~~~~~---~~~~l~~~ldG-----------------~v~v~~~tn~~~~l-~alf~pg~ld~~~~~l~ 284 (377)
T 1svm_A 234 DLPSGQGIN---NLDNLRDYLDG-----------------SVKVNLEKKHLNKR-TQIFPPGIVTMNEYSVP 284 (377)
T ss_dssp TCCCCSHHH---HHHTTHHHHHC-----------------SSCEEECCSSSCCE-EECCCCEEEEECSCCCC
T ss_pred hccccCcch---HHHHHHHHhcC-----------------CCeEeeccCchhhH-HHhhcCcccChhHHhhc
Confidence 3 1111110 01123333331 47789999999999 79999999999887644
No 87
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=99.10 E-value=8.6e-11 Score=113.23 Aligned_cols=115 Identities=15% Similarity=0.100 Sum_probs=72.4
Q ss_pred HhccccCCCCcHHHHHHHHHHHcC--CceEEeeccccccccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeecccccCCC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMG--IEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGR 132 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g--~~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~~r 132 (321)
+.+|+||||||||++|.++|.+.| +.|+.+...|.++.+..+.+..++.+++...+. . +||||||+++...
T Consensus 125 viLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~------~-LLVIDsI~aL~~~ 197 (331)
T 2vhj_A 125 MVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQH------R-VIVIDSLKNVIGA 197 (331)
T ss_dssp EEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHC------S-EEEEECCTTTC--
T ss_pred EEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhC------C-EEEEecccccccc
Confidence 357999999999999999998765 457777557777777777788777777665432 3 9999999998654
Q ss_pred CCC-CccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccccC
Q 020787 133 FGN-TQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPL 190 (321)
Q Consensus 133 ~~~-t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpAL 190 (321)
..+ .......+.+. +++..|++ +.. ..++.||++|| +...|+++
T Consensus 198 ~~~~s~~G~v~~~lr-qlL~~L~~---------~~k---~~gvtVIlttn-p~s~deal 242 (331)
T 2vhj_A 198 AGGNTTSGGISRGAF-DLLSDIGA---------MAA---SRGCVVIASLN-PTSNDDKI 242 (331)
T ss_dssp ---------CCHHHH-HHHHHHHH---------HHH---HHTCEEEEECC-CSSCSSSH
T ss_pred cccccccchHHHHHH-HHHHHHHH---------HHh---hCCCEEEEEeC-CcccchhH
Confidence 332 11111123232 23333321 011 23678899988 77777765
No 88
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=99.07 E-value=3.7e-11 Score=102.70 Aligned_cols=69 Identities=23% Similarity=0.370 Sum_probs=46.5
Q ss_pred HhccccCCCCcHHHHHHHHHHHc---CCceEEeeccccccccCCC-cHHHHHHHHHHHHhhhhhcCCceEEEeecccccC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM---GIEPVIMSAGELESERAGE-PGKLIRERYRTASQVVQNQGKMSCLMINDIDAGL 130 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~---g~~~i~vs~~eL~s~~~GE-ser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~ 130 (321)
.++||||||||||++|+++++++ +.+++.++.+++...+... ....+.+.+.... .+++||||||+...
T Consensus 56 ~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~lilDei~~~~ 128 (202)
T 2w58_A 56 GLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFRELKHSLQDQTMNEKLDYIK-------KVPVLMLDDLGAEA 128 (202)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHC---CCCHHHHHHHH-------HSSEEEEEEECCC-
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHHHHHHHhccchHHHHHHHhc-------CCCEEEEcCCCCCc
Confidence 57899999999999999999988 6788888888776532110 0000122222222 35799999998753
No 89
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.05 E-value=4.4e-10 Score=105.47 Aligned_cols=133 Identities=11% Similarity=0.065 Sum_probs=91.6
Q ss_pred HhccccCCCCcHHHHHHHHHHHc------CCceEEeeccccccccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeecccc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM------GIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDA 128 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~------g~~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDEIDA 128 (321)
.++||||||||||.+|+++|+.+ ...++.++++. + .-+-..||++.+.|.... ..+...|+||||+|.
T Consensus 20 ~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~---~--~~~id~ir~li~~~~~~p-~~~~~kvviIdead~ 93 (305)
T 2gno_A 20 SILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEG---E--NIGIDDIRTIKDFLNYSP-ELYTRKYVIVHDCER 93 (305)
T ss_dssp EEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSS---S--CBCHHHHHHHHHHHTSCC-SSSSSEEEEETTGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCc---C--CCCHHHHHHHHHHHhhcc-ccCCceEEEeccHHH
Confidence 67899999999999999999975 34677776542 1 123456899998886331 124568999999999
Q ss_pred cCCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccccCCCCCCCcceec-CCCHHH
Q 020787 129 GLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYW-QPNLED 207 (321)
Q Consensus 129 g~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpALlRpGRfDr~i~-~Pd~~~ 207 (321)
... . ....|+..+..| .+++.+|.+||.|+.|.|+++- | .+-+ .|+.++
T Consensus 94 lt~-----------~-a~naLLk~LEep--------------~~~t~fIl~t~~~~kl~~tI~S--R--~~~f~~l~~~~ 143 (305)
T 2gno_A 94 MTQ-----------Q-AANAFLKALEEP--------------PEYAVIVLNTRRWHYLLPTIKS--R--VFRVVVNVPKE 143 (305)
T ss_dssp BCH-----------H-HHHHTHHHHHSC--------------CTTEEEEEEESCGGGSCHHHHT--T--SEEEECCCCHH
T ss_pred hCH-----------H-HHHHHHHHHhCC--------------CCCeEEEEEECChHhChHHHHc--e--eEeCCCCCHHH
Confidence 742 1 122455555533 3567788888889999999887 5 3222 478888
Q ss_pred HHHHHHHHhhcCCCCHHHH
Q 020787 208 ILNIVHRMYEKDGITKDEV 226 (321)
Q Consensus 208 R~~Il~~~~~~~~l~~~dl 226 (321)
-...|+..+ +++.+.+
T Consensus 144 i~~~L~~~~---~i~~~~~ 159 (305)
T 2gno_A 144 FRDLVKEKI---GDLWEEL 159 (305)
T ss_dssp HHHHHHHHH---TTHHHHC
T ss_pred HHHHHHHHh---CCCHHHH
Confidence 888887665 3544443
No 90
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.05 E-value=1.9e-10 Score=96.98 Aligned_cols=57 Identities=16% Similarity=0.295 Sum_probs=47.5
Q ss_pred hHhccccCCCCcHHHHHHHHHHHc---CCceEEeeccccccccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeecccccC
Q 020787 54 ASLCIWGGKGQGKSFQTELIFQAM---GIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGL 130 (321)
Q Consensus 54 ~iLgL~GPPGcGKTllaravA~e~---g~~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~ 130 (321)
..++|+||||||||+++++++..+ |...+.+++.++... +.. .+|.+|+|||+++..
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~-----------------~~~---~~~~lLilDE~~~~~ 96 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT-----------------DAA---FEAEYLAVDQVEKLG 96 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC-----------------GGG---GGCSEEEEESTTCCC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH-----------------HHH---hCCCEEEEeCccccC
Confidence 368899999999999999999988 878889999888764 111 268999999999854
No 91
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.91 E-value=2.6e-10 Score=106.51 Aligned_cols=68 Identities=16% Similarity=0.375 Sum_probs=45.4
Q ss_pred HhccccCCCCcHHHHHHHHHHHcC----CceEEeeccccccccCCC-cHHHHHHHHHHHHhhhhhcCCceEEEeeccccc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMG----IEPVIMSAGELESERAGE-PGKLIRERYRTASQVVQNQGKMSCLMINDIDAG 129 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g----~~~i~vs~~eL~s~~~GE-ser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg 129 (321)
.++||||||||||++|+++|.++. .+++.++.++++..+.+. ....+.+.+.... .+.+||||||++.
T Consensus 154 ~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~~-------~~~lLiiDdig~~ 226 (308)
T 2qgz_A 154 GLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDVKNAISNGSVKEEIDAVK-------NVPVLILDDIGAE 226 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHHHHCCCC----CCTTHHHH-------TSSEEEEETCCC-
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHHHHHHhccchHHHHHHHhc-------CCCEEEEcCCCCC
Confidence 588999999999999999998554 788888888776543221 1111112222211 4679999999764
No 92
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.82 E-value=1e-09 Score=111.01 Aligned_cols=100 Identities=16% Similarity=0.196 Sum_probs=57.7
Q ss_pred CceEEEeecccccCCCCCCCccchhhHHHHHHHHhhcCCCCccccCcccc--------ccCCCCCccEEEeeCCC--CCc
Q 020787 117 KMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWR--------ESDITNRIPIIFTGNDF--STI 186 (321)
Q Consensus 117 aPcILFIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~--------~~~~~~~V~VIaaTNrp--~~L 186 (321)
.+.+|||||||..-+ .+...|+..|++-. +.+.|... ..+...++.||+|||+. ..+
T Consensus 201 ~~gvL~LDEi~~l~~------------~~q~~Ll~~Le~~~-~~~~g~~~~~~~~~l~~~~~p~~~~vI~atn~~~~~~l 267 (604)
T 3k1j_A 201 HKGVLFIDEIATLSL------------KMQQSLLTAMQEKK-FPITGQSEMSSGAMVRTEPVPCDFVLVAAGNLDTVDKM 267 (604)
T ss_dssp TTSEEEETTGGGSCH------------HHHHHHHHHHHHSE-ECCBCSCTTSGGGGCBCSCEECCCEEEEEECHHHHHHS
T ss_pred CCCEEEEechhhCCH------------HHHHHHHHHHHcCc-EEecccccccccccCCCCccceeEEEEEecCHHHHhhc
Confidence 567999999999631 23345555554221 22212100 11112367799999987 689
Q ss_pred cccCCCCCCCcc---eecCC-----CHHHHHHHHHHHhh---c----CCCCHHHHHHhhh
Q 020787 187 YAPLIRDGRMEK---FYWQP-----NLEDILNIVHRMYE---K----DGITKDEVGSIVK 231 (321)
Q Consensus 187 DpALlRpGRfDr---~i~~P-----d~~~R~~Il~~~~~---~----~~l~~~dl~~L~d 231 (321)
+|+|++ ||+. .+..| +.+....+++.+.+ . ..++.+.+..|+.
T Consensus 268 ~~~l~~--R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~Li~ 325 (604)
T 3k1j_A 268 HPALRS--RIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEIVR 325 (604)
T ss_dssp CHHHHH--HHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHHHH
T ss_pred CHHHHH--HhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHHHHHHHHH
Confidence 999999 8873 33332 34445555543322 1 2467777777775
No 93
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.79 E-value=4e-08 Score=88.66 Aligned_cols=159 Identities=14% Similarity=0.198 Sum_probs=88.1
Q ss_pred hHhccccCCCCcHHHHHHHHHHHcCCceEEeeccccc------------c---ccCCC---------------------c
Q 020787 54 ASLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELE------------S---ERAGE---------------------P 97 (321)
Q Consensus 54 ~iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~------------s---~~~GE---------------------s 97 (321)
..++|+||+|||||++++.++++.+ .+.++..+.. . ..+++ +
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 109 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRELYAERGHITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPR 109 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHHHHHTTTCBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGG
T ss_pred CeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeecccccccCCCHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccc
Confidence 3678999999999999999999987 4444433211 0 00110 0
Q ss_pred HHHHHHHHHHHHhhhhhcCCceEEEeecccccCCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEE
Q 020787 98 GKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPII 177 (321)
Q Consensus 98 er~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VI 177 (321)
...+.++++.-.+.++.+ .|++|+|||++.+... +... ...+...|-.+++. ..++.+|
T Consensus 110 ~~~~~~~~~~l~~~~~~~-~~~vlvlDe~~~~~~~-~~~~----~~~~~~~L~~~~~~---------------~~~~~~i 168 (350)
T 2qen_A 110 KLSLREVFRELNDLGEEL-GEFIVAFDEAQYLRFY-GSRG----GKELLALFAYAYDS---------------LPNLKII 168 (350)
T ss_dssp GCCHHHHHHHHHHHHHHH-SCEEEEEETGGGGGGB-TTTT----THHHHHHHHHHHHH---------------CTTEEEE
T ss_pred cchHHHHHHHHHHHHhcc-CCEEEEEeCHHHHhcc-Cccc----hhhHHHHHHHHHHh---------------cCCeEEE
Confidence 123344444433332212 3999999999997531 1000 11233334333331 1367788
Q ss_pred EeeCCCCC---------ccccCCCCCCCcceecC-C-CHHHHHHHHHHHhhcC--CCCHHHHHHhhhCCCCCc
Q 020787 178 FTGNDFST---------IYAPLIRDGRMEKFYWQ-P-NLEDILNIVHRMYEKD--GITKDEVGSIVKTFPNQA 237 (321)
Q Consensus 178 aaTNrp~~---------LDpALlRpGRfDr~i~~-P-d~~~R~~Il~~~~~~~--~l~~~dl~~L~d~f~gq~ 237 (321)
+|+..... ...+| .||....+.+ | +.++-.++++..+... .++.+.+..+...+.|-|
T Consensus 169 l~g~~~~~l~~~l~~~~~~~~l--~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~~~~~~~i~~~tgG~P 239 (350)
T 2qen_A 169 LTGSEVGLLHDFLKITDYESPL--YGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVPENEIEEAVELLDGIP 239 (350)
T ss_dssp EEESSHHHHHHHHCTTCTTSTT--TTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHTTCH
T ss_pred EECCcHHHHHHHHhhcCCCCcc--ccCccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCH
Confidence 88754321 12223 2566555554 4 7788888888776544 356666666655444544
No 94
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.71 E-value=3.5e-08 Score=89.04 Aligned_cols=35 Identities=11% Similarity=0.164 Sum_probs=30.4
Q ss_pred hHhccccCCCCcHHHHHHHHHHHcCCceEEeeccc
Q 020787 54 ASLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGE 88 (321)
Q Consensus 54 ~iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~e 88 (321)
..++|+||+|+|||++++.++++++...+.+++..
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~ 65 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRK 65 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGG
T ss_pred CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchh
Confidence 36899999999999999999999887777777654
No 95
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=98.67 E-value=1e-08 Score=116.96 Aligned_cols=73 Identities=14% Similarity=0.140 Sum_probs=55.0
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCc-----eEEeecc--ccccccCC------------CcHHHHHHHHHHHHhhhhhc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIE-----PVIMSAG--ELESERAG------------EPGKLIRERYRTASQVVQNQ 115 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~-----~i~vs~~--eL~s~~~G------------Eser~IR~~F~~A~~~~~~~ 115 (321)
+++||||||||||+||.+++.++... ||....+ .+..+..| ++|+.++.+++.+++.
T Consensus 1429 ~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr~~---- 1504 (2050)
T 3cmu_A 1429 IVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSG---- 1504 (2050)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHHT----
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHHhcC----
Confidence 67899999999999999998876432 5554432 11122334 6788898888888744
Q ss_pred CCceEEEeecccccCCC
Q 020787 116 GKMSCLMINDIDAGLGR 132 (321)
Q Consensus 116 gaPcILFIDEIDAg~~r 132 (321)
+||+||||||++..++
T Consensus 1505 -~~~lVVIDsi~al~p~ 1520 (2050)
T 3cmu_A 1505 -AVDVIVVDSVAALTPK 1520 (2050)
T ss_dssp -CCSEEEESCGGGCCCH
T ss_pred -CCCEEEEcChhHhccc
Confidence 8999999999999874
No 96
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=98.65 E-value=1.9e-08 Score=96.62 Aligned_cols=128 Identities=16% Similarity=0.215 Sum_probs=80.2
Q ss_pred HhccccCCCCcHHHHHHHHHHHcC---CceEEeeccccccc-------------cCCCcHHHHHHHHHHHHhhhhhcCCc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMG---IEPVIMSAGELESE-------------RAGEPGKLIRERYRTASQVVQNQGKM 118 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g---~~~i~vs~~eL~s~-------------~~GEser~IR~~F~~A~~~~~~~gaP 118 (321)
-++|+|++|||||++|+++....+ .+|+.++++++-.. +.|.... -...|+.| .-
T Consensus 162 ~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~~elfg~~~g~~tga~~~-~~g~~~~a--------~~ 232 (387)
T 1ny5_A 162 PVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVSS-KEGFFELA--------DG 232 (387)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHHHHHHCBCTTSSTTCCSC-BCCHHHHT--------TT
T ss_pred CeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHHHHhcCCCCCCCCCcccc-cCCceeeC--------CC
Confidence 468999999999999999998765 68999999876421 2222111 12344444 24
Q ss_pred eEEEeecccccCCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccccCCCCCCCcc
Q 020787 119 SCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEK 198 (321)
Q Consensus 119 cILFIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpALlRpGRfDr 198 (321)
.+||||||+..-. .++..|+..++.-....+++. .....+|-||+|||+.-. .+++.|+|..
T Consensus 233 gtlfldei~~l~~------------~~q~~Ll~~l~~~~~~~~g~~---~~~~~~~rii~at~~~l~---~~~~~g~fr~ 294 (387)
T 1ny5_A 233 GTLFLDEIGELSL------------EAQAKLLRVIESGKFYRLGGR---KEIEVNVRILAATNRNIK---ELVKEGKFRE 294 (387)
T ss_dssp SEEEEESGGGCCH------------HHHHHHHHHHHHSEECCBTCC---SBEECCCEEEEEESSCHH---HHHHTTSSCH
T ss_pred cEEEEcChhhCCH------------HHHHHHHHHHhcCcEEeCCCC---ceeeccEEEEEeCCCCHH---HHHHcCCccH
Confidence 7999999999742 244556666653211112321 111236789999997422 5677888875
Q ss_pred e---------ecCCCHHHHH
Q 020787 199 F---------YWQPNLEDIL 209 (321)
Q Consensus 199 ~---------i~~Pd~~~R~ 209 (321)
- +.+|...+|.
T Consensus 295 dl~~rl~~~~i~lPpLreR~ 314 (387)
T 1ny5_A 295 DLYYRLGVIEIEIPPLRERK 314 (387)
T ss_dssp HHHHHHTTEEEECCCGGGCH
T ss_pred HHHHhhcCCeecCCcchhcc
Confidence 2 2357776653
No 97
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.60 E-value=3.1e-08 Score=87.96 Aligned_cols=122 Identities=14% Similarity=0.119 Sum_probs=74.2
Q ss_pred hhHhccccCCCCcHHHHHHHHHHH--------cC-CceEEeeccccccccC-------------CC--cHHHHHHHHHHH
Q 020787 53 MASLCIWGGKGQGKSFQTELIFQA--------MG-IEPVIMSAGELESERA-------------GE--PGKLIRERYRTA 108 (321)
Q Consensus 53 ~~iLgL~GPPGcGKTllaravA~e--------~g-~~~i~vs~~eL~s~~~-------------GE--ser~IR~~F~~A 108 (321)
+.|.+++||||+|||+.|.+.+.+ .| .++......+|.-++. +| ....+++.|..+
T Consensus 5 ~mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~ 84 (199)
T 2r2a_A 5 AEICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKKP 84 (199)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTSG
T ss_pred eeEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhcc
Confidence 346789999999999999875433 45 4444455555654332 11 123333222111
Q ss_pred HhhhhhcCCceEEEeecccccCCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccc
Q 020787 109 SQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYA 188 (321)
Q Consensus 109 ~~~~~~~gaPcILFIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDp 188 (321)
.++.+||+|||.+...+.+...... .+. |.++ . .+.....-||.+|+.++.|+.
T Consensus 85 ------~~~~~vliIDEAq~l~~~~~~~~e~--~rl----l~~l-~-------------~~r~~~~~iil~tq~~~~l~~ 138 (199)
T 2r2a_A 85 ------ENIGSIVIVDEAQDVWPARSAGSKI--PEN----VQWL-N-------------THRHQGIDIFVLTQGPKLLDQ 138 (199)
T ss_dssp ------GGTTCEEEETTGGGTSBCCCTTCCC--CHH----HHGG-G-------------GTTTTTCEEEEEESCGGGBCH
T ss_pred ------ccCceEEEEEChhhhccCccccchh--HHH----HHHH-H-------------hcCcCCeEEEEECCCHHHHhH
Confidence 3469999999999987543212211 121 2222 1 111346778999999999999
Q ss_pred cCCCCCCCcceecC
Q 020787 189 PLIRDGRMEKFYWQ 202 (321)
Q Consensus 189 ALlRpGRfDr~i~~ 202 (321)
+|+. |++..+.+
T Consensus 139 ~lr~--ri~~~~~l 150 (199)
T 2r2a_A 139 NLRT--LVRKHYHI 150 (199)
T ss_dssp HHHT--TEEEEEEE
T ss_pred HHHH--HhheEEEE
Confidence 9775 99987765
No 98
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.57 E-value=3.5e-08 Score=116.31 Aligned_cols=146 Identities=14% Similarity=0.206 Sum_probs=90.7
Q ss_pred HhccccCCCCcHHHHHHHHHHHc-CCceEEeeccccccccCCCcHHHHHHHHHHHHhhhh----------h-cCCceEEE
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM-GIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQ----------N-QGKMSCLM 122 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~-g~~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~----------~-~gaPcILF 122 (321)
-++|.||||||||+++......+ +..++.++-++-.+ ...+-..+..-.+..+ . .|+.+|||
T Consensus 1306 pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tt------a~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~VlF 1379 (3245)
T 3vkg_A 1306 PLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATT------PELLLKTFDHHCEYKRTPSGETVLRPTQLGKWLVVF 1379 (3245)
T ss_dssp CCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCC------HHHHHHHHHHHEEEEECTTSCEEEEESSTTCEEEEE
T ss_pred cEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCC------HHHHHHHHhhcceEEeccCCCcccCCCcCCceEEEE
Confidence 56899999999998876555444 65677777765443 4555566653221110 0 25668999
Q ss_pred eecccccCCCCCCCccchhhHHHHHHHHhhcCCCCccc-cCccccccCCCCCccEEEeeCCC-----CCccccCCCCCCC
Q 020787 123 INDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVS-IGQDWRESDITNRIPIIFTGNDF-----STIYAPLIRDGRM 196 (321)
Q Consensus 123 IDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~vq-l~g~~~~~~~~~~V~VIaaTNrp-----~~LDpALlRpGRf 196 (321)
||||+--....-++ |.+...|..++|.-...- -++.|.. ..++-+|+|.|-| ..|+|+|+| ||
T Consensus 1380 iDDiNmp~~D~yGt------Q~~ielLrqlld~~g~yd~~~~~~~~---i~d~~~vaamnPp~~gGr~~l~~Rf~r--~F 1448 (3245)
T 3vkg_A 1380 CDEINLPSTDKYGT------QRVITFIRQMVEKGGFWRTSDHTWIK---LDKIQFVGACNPPTDAGRVQLTHRFLR--HA 1448 (3245)
T ss_dssp ETTTTCCCCCTTSC------CHHHHHHHHHHHHSEEEETTTTEEEE---ESSEEEEEEECCTTSTTCCCCCHHHHT--TC
T ss_pred ecccCCCCcccccc------ccHHHHHHHHHHcCCeEECCCCeEEE---ecCeEEEEEcCCCCCCCCccCCHHHHh--hc
Confidence 99999633221133 345556666666311100 0112221 3467889999977 469999999 88
Q ss_pred cceec-CCCHHHHHHHHHHHhh
Q 020787 197 EKFYW-QPNLEDILNIVHRMYE 217 (321)
Q Consensus 197 Dr~i~-~Pd~~~R~~Il~~~~~ 217 (321)
-.+.. .|+.++-..|+..++.
T Consensus 1449 ~vi~i~~ps~esL~~If~til~ 1470 (3245)
T 3vkg_A 1449 PILLVDFPSTSSLTQIYGTFNR 1470 (3245)
T ss_dssp CEEECCCCCHHHHHHHHHHHHH
T ss_pred eEEEeCCCCHHHHHHHHHHHHH
Confidence 76444 4999999999875543
No 99
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.51 E-value=5.1e-08 Score=88.86 Aligned_cols=100 Identities=15% Similarity=0.110 Sum_probs=56.1
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeeccccccccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeecccccCCCCC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG 134 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~~r~~ 134 (321)
.++||||||||||++|.++|+.+.-..+....+. ..-| +..+ ....||+|||+|.-+
T Consensus 60 ~ili~GPPGtGKTt~a~ala~~l~g~i~~fans~-s~f~-----------l~~l-------~~~kIiiLDEad~~~---- 116 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIHFIQGAVISFVNST-SHFW-----------LEPL-------TDTKVAMLDDATTTC---- 116 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHHHHTCEECCCCCSS-SCGG-----------GGGG-------TTCSSEEEEEECHHH----
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeeeEEecc-chhh-----------hccc-------CCCCEEEEECCCchh----
Confidence 5899999999999999999999865433221110 0001 1111 124599999999532
Q ss_pred CCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCC
Q 020787 135 NTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFST 185 (321)
Q Consensus 135 ~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~ 185 (321)
.+.+...+-+.+|+- .++++--+...-....-|+|+|||-.-.
T Consensus 117 -------~~~~d~~lrn~ldG~-~~~iD~Khr~~~~~~~~PlIITtN~~~~ 159 (212)
T 1tue_A 117 -------WTYFDTYMRNALDGN-PISIDRKHKPLIQLKCPPILLTTNIHPA 159 (212)
T ss_dssp -------HHHHHHHCHHHHHTC-CEEEC----CCEEECCCCEEEEESSCTT
T ss_pred -------HHHHHHHHHHHhCCC-cccHHHhhcCccccCCCCEEEecCCCcc
Confidence 122334556667753 2333321111111235699999996433
No 100
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=98.49 E-value=2.2e-07 Score=88.92 Aligned_cols=127 Identities=19% Similarity=0.288 Sum_probs=78.2
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCc--eEEeecccccccc-------------CCCcHHHHHHHHHHHHhhhhhcCCce
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIE--PVIMSAGELESER-------------AGEPGKLIRERYRTASQVVQNQGKMS 119 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~--~i~vs~~eL~s~~-------------~GEser~IR~~F~~A~~~~~~~gaPc 119 (321)
-++|+|++||||+++|+++....+-. |+.++++.+-... .|.... -...|+.| .--
T Consensus 154 ~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~lfg~~~g~~tga~~~-~~g~~~~a--------~~g 224 (368)
T 3dzd_A 154 PVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESELFGHEKGAFTGALTR-KKGKLELA--------DQG 224 (368)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHHHHEECSCSSSSCCCC-EECHHHHT--------TTS
T ss_pred hheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHHhcCccccccCCcccc-cCChHhhc--------CCC
Confidence 47899999999999999999887654 9999998764321 111000 01234443 234
Q ss_pred EEEeecccccCCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCccccCCCCCCCcc-
Q 020787 120 CLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEK- 198 (321)
Q Consensus 120 ILFIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~~LDpALlRpGRfDr- 198 (321)
.||||||+..-+ .++..|+..+++-....+++. .....++-||+|||+. ...++..|+|..
T Consensus 225 tlfldei~~l~~------------~~Q~~Ll~~l~~~~~~~~g~~---~~~~~~~rii~at~~~---l~~~v~~g~fr~d 286 (368)
T 3dzd_A 225 TLFLDEVGELDQ------------RVQAKLLRVLETGSFTRLGGN---QKIEVDIRVISATNKN---LEEEIKKGNFRED 286 (368)
T ss_dssp EEEEETGGGSCH------------HHHHHHHHHHHHSEECCBTCC---CBEECCCEEEEEESSC---HHHHHHTTSSCHH
T ss_pred eEEecChhhCCH------------HHHHHHHHHHHhCCcccCCCC---cceeeeeEEEEecCCC---HHHHHHcCCccHH
Confidence 799999998742 344566666653222222221 1112367799999953 235778898876
Q ss_pred --------eecCCCHHHH
Q 020787 199 --------FYWQPNLEDI 208 (321)
Q Consensus 199 --------~i~~Pd~~~R 208 (321)
.+.+|...+|
T Consensus 287 L~~rl~~~~i~lPpLreR 304 (368)
T 3dzd_A 287 LYYRLSVFQIYLPPLRER 304 (368)
T ss_dssp HHHHHTSEEEECCCGGGS
T ss_pred HHHHhCCeEEeCCChhhc
Confidence 2335766655
No 101
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.46 E-value=4.2e-07 Score=106.23 Aligned_cols=132 Identities=14% Similarity=0.216 Sum_probs=91.9
Q ss_pred hccccCCCCcHHHHHHHHHHHcCCceEEeeccccccccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeecccccCCCCCC
Q 020787 56 LCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGN 135 (321)
Q Consensus 56 LgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~~r~~~ 135 (321)
..+.||||||||.+++++|+.+|..+++++++|-.+ .+.+..+|.-|.+. .+.++||||+.+-+.
T Consensus 648 ~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld------~~~lg~~~~g~~~~------Gaw~~~DE~nr~~~e--- 712 (2695)
T 4akg_A 648 GCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFD------YQVLSRLLVGITQI------GAWGCFDEFNRLDEK--- 712 (2695)
T ss_dssp EEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCC------HHHHHHHHHHHHHH------TCEEEEETTTSSCHH---
T ss_pred CcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCC------hhHhhHHHHHHHhc------CCEeeehhhhhcChH---
Confidence 458899999999999999999999999999998876 46778888887653 689999999986432
Q ss_pred CccchhhHHHHHHHHhh----cCCCCccccCccccccCCCCCccEEEeeC----CCCCccccCCCCCCCcceec--CCCH
Q 020787 136 TQMTVNNQIVVGTLMNL----SDNPTRVSIGQDWRESDITNRIPIIFTGN----DFSTIYAPLIRDGRMEKFYW--QPNL 205 (321)
Q Consensus 136 t~~~v~~q~V~~tLl~l----lD~~~~vql~g~~~~~~~~~~V~VIaaTN----rp~~LDpALlRpGRfDr~i~--~Pd~ 205 (321)
+ -..+.+++..+ .++...+...|. .....+..-|++|-| .-..|+.+|.+ || +.++ .||.
T Consensus 713 ----v-Ls~l~~~l~~i~~al~~~~~~i~~~g~--~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~--~F-r~v~m~~Pd~ 782 (2695)
T 4akg_A 713 ----V-LSAVSANIQQIQNGLQVGKSHITLLEE--ETPLSPHTAVFITLNPGYNGRSELPENLKK--SF-REFSMKSPQS 782 (2695)
T ss_dssp ----H-HHHHHHHHHHHHHHHHHTCSEEECSSS--EEECCTTCEEEEEECCCSSSSCCCCHHHHT--TE-EEEECCCCCH
T ss_pred ----H-HHHHHHHHHHHHHHHHcCCcEEeeCCc--EEecCCCceEEEEeCCCccCcccccHHHHh--he-EEEEeeCCCH
Confidence 1 11222233222 233333444442 112234566788888 55678888877 66 4454 4999
Q ss_pred HHHHHHH
Q 020787 206 EDILNIV 212 (321)
Q Consensus 206 ~~R~~Il 212 (321)
+...+|+
T Consensus 783 ~~i~ei~ 789 (2695)
T 4akg_A 783 GTIAEMI 789 (2695)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9888885
No 102
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.41 E-value=9.5e-07 Score=75.25 Aligned_cols=90 Identities=20% Similarity=0.220 Sum_probs=55.8
Q ss_pred hhhhhhccC-ccccchhhhhHhccccCCCCcHHHHHHHHHHHcCCceEEeeccc------ccc--ccCCC----------
Q 020787 36 TRSFEYLQG-DYYIAPVFMASLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGE------LES--ERAGE---------- 96 (321)
Q Consensus 36 ~~~~~~~~~-~~~~~p~f~~iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~e------L~s--~~~GE---------- 96 (321)
...++.+.+ |+ ++- .+.+|.||||||||++++.+|...+-..+.++..+ +.. +..|-
T Consensus 6 ~~~LD~~l~Ggi--~~G--~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (220)
T 2cvh_A 6 TKSLDSLLGGGF--APG--VLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEGGFSPERLVQMAETRGLNPEEALSRFI 81 (220)
T ss_dssp CHHHHHHTTSSB--CTT--SEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSCCCCHHHHHHHHHTTTCCHHHHHHHEE
T ss_pred cHHHHHhhcCCC--cCC--EEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCCCCCHHHHHHHHHhcCCChHHHhhcEE
Confidence 345555553 43 221 37899999999999999999987777777777654 100 00110
Q ss_pred -----cHHHHHHHHHHHHhhhhhcCCceEEEeecccccCC
Q 020787 97 -----PGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLG 131 (321)
Q Consensus 97 -----ser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~~ 131 (321)
+....+++.+.++..++ . .|.+|+|||+.++..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~-~-~~~lliiD~~~~~l~ 119 (220)
T 2cvh_A 82 LFTPSDFKEQRRVIGSLKKTVD-S-NFALVVVDSITAHYR 119 (220)
T ss_dssp EECCTTTSHHHHHHHHHHHHCC-T-TEEEEEEECCCCCTT
T ss_pred EEecCCHHHHHHHHHHHHHHhh-c-CCCEEEEcCcHHHhh
Confidence 01122344555555542 1 599999999999763
No 103
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.40 E-value=6.8e-07 Score=77.29 Aligned_cols=28 Identities=25% Similarity=0.424 Sum_probs=24.5
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceE
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPV 82 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i 82 (321)
.++|.||+|||||++++++++.+++.+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~~ 29 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRAI 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcCC
Confidence 3689999999999999999999986554
No 104
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=98.21 E-value=1.6e-06 Score=99.34 Aligned_cols=76 Identities=13% Similarity=0.165 Sum_probs=61.2
Q ss_pred HhccccCCCCcHHHHHHHHHHHcC---CceEEeecccccccc----CC--------CcHHHHHHHHHHHHhhhhhcCCce
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMG---IEPVIMSAGELESER----AG--------EPGKLIRERYRTASQVVQNQGKMS 119 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g---~~~i~vs~~eL~s~~----~G--------Eser~IR~~F~~A~~~~~~~gaPc 119 (321)
+.+|+|+||||||.+|..+|..+. -+++.+++.+..+++ .| +++..+.++++.++++.+ ..+|+
T Consensus 734 lilIaG~PG~GKTtLalqlA~~~a~~g~~VlyiS~Ees~~ql~A~rlG~~~~~l~i~~~~~i~~i~~~~r~l~~-~~~~~ 812 (2050)
T 3cmu_A 734 IVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR-SGAVD 812 (2050)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH-HTCCS
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECCCcHHHHHHHHcCCCccceEEecCCCHHHHHHHHHHHhh-ccCCC
Confidence 557899999999999999998774 358889998877765 45 455668888888876543 46899
Q ss_pred EEEeecccccCC
Q 020787 120 CLMINDIDAGLG 131 (321)
Q Consensus 120 ILFIDEIDAg~~ 131 (321)
+||||.|+++.+
T Consensus 813 LVIIDsLq~i~~ 824 (2050)
T 3cmu_A 813 VIVVDSVAALTP 824 (2050)
T ss_dssp EEEESCGGGCCC
T ss_pred EEEEcchhhhcc
Confidence 999999999875
No 105
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=98.21 E-value=3.2e-06 Score=73.02 Aligned_cols=76 Identities=12% Similarity=0.089 Sum_probs=47.6
Q ss_pred HhccccCCCCcHHHHHHHHHHH--c-------CCceEEeeccccccc--------cCCC---------------cHHHHH
Q 020787 55 SLCIWGGKGQGKSFQTELIFQA--M-------GIEPVIMSAGELESE--------RAGE---------------PGKLIR 102 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e--~-------g~~~i~vs~~eL~s~--------~~GE---------------ser~IR 102 (321)
+.+|+||||||||++++.+|.. + +-..+.+++.+..+. ..|- +...+.
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 105 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFNTDHQT 105 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEecCCHHHHH
Confidence 7899999999999999999985 2 445666766542110 0111 111122
Q ss_pred HHHHHHHhhhhhcCCceEEEeecccccCC
Q 020787 103 ERYRTASQVVQNQGKMSCLMINDIDAGLG 131 (321)
Q Consensus 103 ~~F~~A~~~~~~~gaPcILFIDEIDAg~~ 131 (321)
++...+.+.++ ...|.+|+|||+-++..
T Consensus 106 ~~~~~~~~~~~-~~~~~lliiD~~~~~~~ 133 (243)
T 1n0w_A 106 QLLYQASAMMV-ESRYALLIVDSATALYR 133 (243)
T ss_dssp HHHHHHHHHHH-HSCEEEEEEETSSGGGC
T ss_pred HHHHHHHHHHh-cCCceEEEEeCchHHHH
Confidence 23333333332 35799999999999763
No 106
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=98.20 E-value=6.6e-06 Score=69.93 Aligned_cols=46 Identities=15% Similarity=0.154 Sum_probs=31.2
Q ss_pred hhhhhhccC-ccccchhhhhHhccccCCCCcHHHHHHHHHHHc---CCceEEee
Q 020787 36 TRSFEYLQG-DYYIAPVFMASLCIWGGKGQGKSFQTELIFQAM---GIEPVIMS 85 (321)
Q Consensus 36 ~~~~~~~~~-~~~~~p~f~~iLgL~GPPGcGKTllaravA~e~---g~~~i~vs 85 (321)
...++++.+ |+ ++- .+++|.||||||||++++.+|... +-..+.++
T Consensus 9 ~~~Ld~~~~ggi--~~G--~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~ 58 (235)
T 2w0m_A 9 ILDFDKLIQGGI--PQG--FFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVT 58 (235)
T ss_dssp CHHHHGGGTTSE--ETT--CEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred chHHHHHhcCCC--cCC--CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 445566653 43 332 478999999999999999998653 44444444
No 107
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=98.12 E-value=2.4e-06 Score=70.95 Aligned_cols=33 Identities=15% Similarity=0.139 Sum_probs=29.5
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeecc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAG 87 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~ 87 (321)
++.|.||||+|||++++++|++++.+++.++..
T Consensus 5 ~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D 37 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVD 37 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCCeEEeccc
Confidence 467999999999999999999999999887654
No 108
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=98.00 E-value=6e-06 Score=70.59 Aligned_cols=24 Identities=21% Similarity=0.266 Sum_probs=21.7
Q ss_pred hHhccccCCCCcHHHHHHHHHHHc
Q 020787 54 ASLCIWGGKGQGKSFQTELIFQAM 77 (321)
Q Consensus 54 ~iLgL~GPPGcGKTllaravA~e~ 77 (321)
++++|.||||||||+++++++...
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 388999999999999999999854
No 109
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.99 E-value=8.6e-06 Score=77.73 Aligned_cols=96 Identities=16% Similarity=0.179 Sum_probs=57.4
Q ss_pred HHHhhhhhhccC-ccccchhhhhHhccccCCCCcHHHHHHHHHHHc---CCceEEeeccccccc----cCCCcH------
Q 020787 33 QKVTRSFEYLQG-DYYIAPVFMASLCIWGGKGQGKSFQTELIFQAM---GIEPVIMSAGELESE----RAGEPG------ 98 (321)
Q Consensus 33 ~~~~~~~~~~~~-~~~~~p~f~~iLgL~GPPGcGKTllaravA~e~---g~~~i~vs~~eL~s~----~~GEse------ 98 (321)
.+....++.+-+ |- +|+ =.+.+|+||||||||++|..+|..+ |-..+.++..+-.+. ..|-..
T Consensus 43 ~TG~~~LD~~Lg~GG-l~~--G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~ 119 (349)
T 2zr9_A 43 PTGSISLDVALGIGG-LPR--GRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVS 119 (349)
T ss_dssp CCSCHHHHHHTSSSS-EET--TSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEE
T ss_pred ccCCHHHHHHhccCC-ccC--CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEe
Confidence 334555666655 22 222 1378899999999999999888654 455555665443322 122110
Q ss_pred --HHHHHHHHHHHhhhhhcCCceEEEeecccccCCC
Q 020787 99 --KLIRERYRTASQVVQNQGKMSCLMINDIDAGLGR 132 (321)
Q Consensus 99 --r~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~~r 132 (321)
..+.+.++.+...++ .++|++|+||++.++.++
T Consensus 120 ~~~~~e~~l~~~~~l~~-~~~~~lIVIDsl~~l~~~ 154 (349)
T 2zr9_A 120 QPDTGEQALEIADMLVR-SGALDIIVIDSVAALVPR 154 (349)
T ss_dssp CCSSHHHHHHHHHHHHT-TTCCSEEEEECGGGCCCH
T ss_pred cCCCHHHHHHHHHHHHh-cCCCCEEEEcChHhhcch
Confidence 012334444444432 457999999999998753
No 110
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.97 E-value=4.5e-06 Score=69.16 Aligned_cols=43 Identities=30% Similarity=0.295 Sum_probs=33.3
Q ss_pred hhHhccccCCCCcHHHHHHHHHHHcCCceEEeeccccccccCCCc
Q 020787 53 MASLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEP 97 (321)
Q Consensus 53 ~~iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~~~GEs 97 (321)
|.+++|.|+||||||++++.+|+++|++++.. .++..+..|.+
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg~~~id~--D~~~~~~~g~~ 49 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALKLEVLDT--DMIISERVGLS 49 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHTCCEEEH--HHHHHHHHTSC
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhCCCEEEC--hHHHHHHhCCC
Confidence 56889999999999999999999999988753 44444434543
No 111
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=97.95 E-value=1.5e-06 Score=81.34 Aligned_cols=25 Identities=20% Similarity=0.361 Sum_probs=23.1
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGI 79 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~ 79 (321)
-|+||||||||||++|+|+|+.++.
T Consensus 106 ~~~l~GppgtGKt~~a~ala~~~~l 130 (267)
T 1u0j_A 106 TIWLFGPATTGKTNIAEAIAHTVPF 130 (267)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred EEEEECCCCCCHHHHHHHHHhhhcc
Confidence 4899999999999999999998765
No 112
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.92 E-value=1.8e-05 Score=68.44 Aligned_cols=32 Identities=22% Similarity=0.370 Sum_probs=24.3
Q ss_pred HhccccCCCCcHHHHHHHHH--H--HcCCceEEeec
Q 020787 55 SLCIWGGKGQGKSFQTELIF--Q--AMGIEPVIMSA 86 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA--~--e~g~~~i~vs~ 86 (321)
+++|.||+|||||+++++++ . ..+-..+.++.
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~ 67 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEc
Confidence 88999999999999999988 3 23444444444
No 113
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.87 E-value=2.7e-05 Score=75.13 Aligned_cols=94 Identities=12% Similarity=0.126 Sum_probs=57.3
Q ss_pred HHhhhhhhccC-ccccchhhhhHhccccCCCCcHHHHHHHHHHHc---CCceEEeecccccccc----CCC--------c
Q 020787 34 KVTRSFEYLQG-DYYIAPVFMASLCIWGGKGQGKSFQTELIFQAM---GIEPVIMSAGELESER----AGE--------P 97 (321)
Q Consensus 34 ~~~~~~~~~~~-~~~~~p~f~~iLgL~GPPGcGKTllaravA~e~---g~~~i~vs~~eL~s~~----~GE--------s 97 (321)
+....++.+-| |- +||- .+.+|+||||||||+||..+|..+ |-..+.+++.+..+.. .|- .
T Consensus 44 TG~~~LD~~Lg~GG-i~~G--~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~ 120 (356)
T 3hr8_A 44 TGSLAIDIATGVGG-YPRG--RIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQ 120 (356)
T ss_dssp CSCHHHHHHTSSSS-EETT--EEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEEC
T ss_pred CCCHHHHHHhccCC-ccCC--cEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhh
Confidence 44555666655 32 2222 378899999999999999998774 5566667765533210 000 0
Q ss_pred HHHHHHHHHHHHhhhhhcCCceEEEeecccccCC
Q 020787 98 GKLIRERYRTASQVVQNQGKMSCLMINDIDAGLG 131 (321)
Q Consensus 98 er~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~~ 131 (321)
+..+.++...+...++ .++|.+++||.|-+..+
T Consensus 121 ~~~~e~~l~~~~~l~~-~~~~dlvVIDSi~~l~~ 153 (356)
T 3hr8_A 121 PDHGEQALEIVDELVR-SGVVDLIVVDSVAALVP 153 (356)
T ss_dssp CSSHHHHHHHHHHHHH-TSCCSEEEEECTTTCCC
T ss_pred ccCHHHHHHHHHHHhh-hcCCCeEEehHhhhhcC
Confidence 1112233344443332 46899999999999776
No 114
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.83 E-value=8.7e-06 Score=67.26 Aligned_cols=40 Identities=23% Similarity=0.312 Sum_probs=30.5
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeeccccccccCCC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGE 96 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~~~GE 96 (321)
+++|.||||||||++++++|+.++..++ ++.++..+..|.
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~~l~~~~i--d~d~~~~~~~~~ 45 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQQLNMEFY--DSDQEIEKRTGA 45 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTTCEEE--EHHHHHHHHHTS
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEE--eccHHHHHHhCc
Confidence 5789999999999999999999997554 455544333343
No 115
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.83 E-value=4.1e-05 Score=72.76 Aligned_cols=76 Identities=8% Similarity=0.095 Sum_probs=49.3
Q ss_pred HhccccCCCCcHHHHHHHHHHHcC---------CceEEeeccccccc--------c-------------CCC--cHHHHH
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMG---------IEPVIMSAGELESE--------R-------------AGE--PGKLIR 102 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g---------~~~i~vs~~eL~s~--------~-------------~GE--ser~IR 102 (321)
+.+|+||||||||++++.+|.... -..+.+++-+.... . +.. ......
T Consensus 133 i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i~~i~q~~~~~~~~v~~ni~~~~~~~~~~~~ 212 (349)
T 1pzn_A 133 ITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARAFNSNHQM 212 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHHHHHHHTTTCCHHHHGGGEEEEECCSHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHHHHHHHHcCCCHHHHhhCEEEEecCChHHHH
Confidence 788999999999999999999872 24466666443210 0 000 011234
Q ss_pred HHHHHHHhhhhhc----CCceEEEeecccccC
Q 020787 103 ERYRTASQVVQNQ----GKMSCLMINDIDAGL 130 (321)
Q Consensus 103 ~~F~~A~~~~~~~----gaPcILFIDEIDAg~ 130 (321)
++...+...++.- ..|.+|+|||+=++.
T Consensus 213 ~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~l 244 (349)
T 1pzn_A 213 LLVQQAEDKIKELLNTDRPVKLLIVDSLTSHF 244 (349)
T ss_dssp HHHHHHHHHHHHSSSSSSCEEEEEEETSSTTH
T ss_pred HHHHHHHHHHHHhccccCCCCEEEEeCchHhh
Confidence 4555565555311 589999999999875
No 116
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.81 E-value=8.2e-06 Score=68.30 Aligned_cols=41 Identities=15% Similarity=0.081 Sum_probs=32.5
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeeccccccccCCCc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEP 97 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~~~GEs 97 (321)
++.|.||||||||++++++|+++|+.++.. .++..+..|.+
T Consensus 7 ~i~l~G~~GsGKst~a~~La~~l~~~~i~~--d~~~~~~~g~~ 47 (185)
T 3trf_A 7 NIYLIGLMGAGKTSVGSQLAKLTKRILYDS--DKEIEKRTGAD 47 (185)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEH--HHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEC--hHHHHHHcCCC
Confidence 467999999999999999999999988754 44454455544
No 117
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.80 E-value=6.1e-05 Score=72.65 Aligned_cols=95 Identities=15% Similarity=0.133 Sum_probs=56.1
Q ss_pred HHHhhhhhhccC--ccccchhhhhHhccccCCCCcHHHHHHHHHHHc---CCceEEeecccccccc----CCCcH-----
Q 020787 33 QKVTRSFEYLQG--DYYIAPVFMASLCIWGGKGQGKSFQTELIFQAM---GIEPVIMSAGELESER----AGEPG----- 98 (321)
Q Consensus 33 ~~~~~~~~~~~~--~~~~~p~f~~iLgL~GPPGcGKTllaravA~e~---g~~~i~vs~~eL~s~~----~GEse----- 98 (321)
.+....++.+-+ |+ |+. .+..|+||||||||++|..+|.++ |-..+.++...-.+.+ .|-..
T Consensus 56 ~TG~~~LD~~Lg~GGl--~~G--~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i 131 (366)
T 1xp8_A 56 STGSLSLDLALGVGGI--PRG--RITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLV 131 (366)
T ss_dssp CCSCHHHHHHTSSSSE--ETT--SEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEE
T ss_pred cCCCHHHHHHhCCCCc--cCC--cEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHcee
Confidence 344555666555 33 321 357789999999999998887664 5566666654433221 12100
Q ss_pred ---HHHHHHHHHHHhhhhhcCCceEEEeecccccCCC
Q 020787 99 ---KLIRERYRTASQVVQNQGKMSCLMINDIDAGLGR 132 (321)
Q Consensus 99 ---r~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~~r 132 (321)
..+.++.+.+...++ .+.+++|+||.|.+..++
T Consensus 132 ~~~~~~e~~l~~l~~l~~-~~~~~lVVIDsl~~l~~~ 167 (366)
T 1xp8_A 132 SQPDNGEQALEIMELLVR-SGAIDVVVVDSVAALTPR 167 (366)
T ss_dssp ECCSSHHHHHHHHHHHHT-TTCCSEEEEECTTTCCCS
T ss_pred ecCCcHHHHHHHHHHHHh-cCCCCEEEEeChHHhccc
Confidence 011223333333332 457999999999998764
No 118
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.78 E-value=1.4e-05 Score=90.39 Aligned_cols=76 Identities=14% Similarity=0.227 Sum_probs=53.7
Q ss_pred HhccccCCCCcHHHHHHHHHHHc---CCceEEeeccccc----cccCC--------CcHHHHHHHHHHHHhhhhhcCCce
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM---GIEPVIMSAGELE----SERAG--------EPGKLIRERYRTASQVVQNQGKMS 119 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~---g~~~i~vs~~eL~----s~~~G--------Eser~IR~~F~~A~~~~~~~gaPc 119 (321)
+.+|+||||+|||++|..+|.++ |-+++.++..+.. .+..| ..+..+.+++..+++..+ ..+|+
T Consensus 734 lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ees~~ql~A~~lGvd~~~L~i~~~~~leei~~~l~~lv~-~~~~~ 812 (1706)
T 3cmw_A 734 IVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR-SGAVD 812 (1706)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH-HTCCS
T ss_pred eEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccchHHHHHHHHcCCChhheEEecCCcHHHHHHHHHHHHH-ccCCC
Confidence 67789999999999999988765 4467777776554 23334 122244566666655443 46899
Q ss_pred EEEeecccccCC
Q 020787 120 CLMINDIDAGLG 131 (321)
Q Consensus 120 ILFIDEIDAg~~ 131 (321)
+|+||.|.+..+
T Consensus 813 lVVIDsLq~l~~ 824 (1706)
T 3cmw_A 813 VIVVDSVAALTP 824 (1706)
T ss_dssp EEEESCSTTCCC
T ss_pred EEEEechhhhcc
Confidence 999999999875
No 119
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=97.76 E-value=7e-05 Score=67.88 Aligned_cols=23 Identities=22% Similarity=0.179 Sum_probs=20.9
Q ss_pred HhccccCCCCcHHHHHHHHHHHc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM 77 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~ 77 (321)
+.+|.||||+|||++++.+|..+
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 78999999999999999988765
No 120
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.76 E-value=9.2e-05 Score=63.81 Aligned_cols=32 Identities=22% Similarity=0.410 Sum_probs=23.9
Q ss_pred HhccccCCCCcHHHHHHHHHHH---cCCceEEeec
Q 020787 55 SLCIWGGKGQGKSFQTELIFQA---MGIEPVIMSA 86 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e---~g~~~i~vs~ 86 (321)
+.+|.||||+|||++|..+|.. .|-..+.++.
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~ 59 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVAL 59 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 6789999999999998877653 3545555544
No 121
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.75 E-value=1.1e-05 Score=66.04 Aligned_cols=30 Identities=10% Similarity=-0.096 Sum_probs=26.7
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEe
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIM 84 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~v 84 (321)
++.|.||||||||++++++++++|..++..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 32 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKG 32 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecC
Confidence 568999999999999999999999887543
No 122
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.72 E-value=3.6e-05 Score=69.33 Aligned_cols=53 Identities=13% Similarity=0.189 Sum_probs=39.2
Q ss_pred HhccccCCCCcHHHHHHHHHHH---cCCceEEeeccccccc---cCCCcHHHHHHHHHH
Q 020787 55 SLCIWGGKGQGKSFQTELIFQA---MGIEPVIMSAGELESE---RAGEPGKLIRERYRT 107 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e---~g~~~i~vs~~eL~s~---~~GEser~IR~~F~~ 107 (321)
++.|.|+||+|||++|+.++.. .|..++.++..++... |....+..++.....
T Consensus 6 lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~~~l~~~~~~~e~~~~~~~~~ 64 (260)
T 3a4m_A 6 LIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRESFPVWKEKYEEFIKKSTYR 64 (260)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHHTTSSSCCGGGHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHHHHHhhhhHHHHHHHHHHHHH
Confidence 5679999999999999999998 8888887776554433 444456666655443
No 123
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.68 E-value=1.2e-05 Score=64.84 Aligned_cols=29 Identities=31% Similarity=0.457 Sum_probs=25.8
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEe
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIM 84 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~v 84 (321)
+++|.||||||||++|+++ +++|..++.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 4679999999999999999 9999987764
No 124
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.68 E-value=7.3e-05 Score=71.74 Aligned_cols=92 Identities=16% Similarity=0.212 Sum_probs=55.4
Q ss_pred HHhhhhhhccC-ccccchhhhhHhccccCCCCcHHHHHHHHHHHc---CCceEEeeccccccc----cCCC---------
Q 020787 34 KVTRSFEYLQG-DYYIAPVFMASLCIWGGKGQGKSFQTELIFQAM---GIEPVIMSAGELESE----RAGE--------- 96 (321)
Q Consensus 34 ~~~~~~~~~~~-~~~~~p~f~~iLgL~GPPGcGKTllaravA~e~---g~~~i~vs~~eL~s~----~~GE--------- 96 (321)
+....++.+-+ |- +|+. .+..|+||||||||++|..+|.++ |-..+.++..+-.+. ..|-
T Consensus 46 TG~~~LD~~Lg~GG-l~~G--~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~ 122 (356)
T 1u94_A 46 TGSLSLDIALGAGG-LPMG--RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQ 122 (356)
T ss_dssp CSCHHHHHHTSSSS-EETT--SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEEC
T ss_pred CCCHHHHHHhccCC-ccCC--eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeC
Confidence 34455666554 21 2222 378899999999999998888653 556666766432221 1111
Q ss_pred --cHHHHHHHHHHHHhhhhhcCCceEEEeecccccCCC
Q 020787 97 --PGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGR 132 (321)
Q Consensus 97 --ser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~~r 132 (321)
+...++++.+ ..++ .+.+.+|+||.+.+..++
T Consensus 123 ~~~~e~~~~~~~---~l~~-~~~~~lVVIDsl~~l~~~ 156 (356)
T 1u94_A 123 PDTGEQALEICD---ALAR-SGAVDVIVVDSVAALTPK 156 (356)
T ss_dssp CSSHHHHHHHHH---HHHH-HTCCSEEEEECGGGCCCH
T ss_pred CCCHHHHHHHHH---HHHh-ccCCCEEEEcCHHHhcch
Confidence 1222333333 2222 457999999999998753
No 125
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.67 E-value=1.8e-05 Score=67.96 Aligned_cols=42 Identities=14% Similarity=0.147 Sum_probs=32.7
Q ss_pred hHhccccCCCCcHHHHHHHHHHHcCCceEEeeccccccccCCCc
Q 020787 54 ASLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEP 97 (321)
Q Consensus 54 ~iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~~~GEs 97 (321)
.++.|.||||||||++++++|+.+|..++.. .++.....|.+
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~--d~~~~~~~g~~ 67 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFARKLNVPFIDL--DWYIEERFHKT 67 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCCEEEH--HHHHHHHHTSC
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCEEcc--hHHHHHHhCCc
Confidence 4788999999999999999999999988654 44444444443
No 126
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.66 E-value=0.00013 Score=71.23 Aligned_cols=76 Identities=13% Similarity=0.089 Sum_probs=45.5
Q ss_pred HhccccCCCCcHHHHHHHHHHHc---------CCceEEeeccccccc--------cCCCc---------------HHHHH
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM---------GIEPVIMSAGELESE--------RAGEP---------------GKLIR 102 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~---------g~~~i~vs~~eL~s~--------~~GEs---------------er~IR 102 (321)
+.+|+||||||||+|++.+|... +-..+.+++.+..+. -+|-. .....
T Consensus 180 i~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~~~~~~~~ 259 (400)
T 3lda_A 180 ITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAYNADHQL 259 (400)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSHHHHH
T ss_pred EEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEeccCChHHHH
Confidence 78899999999999999766433 233566666543211 01110 01122
Q ss_pred HHHHHHHhhhhhcCCceEEEeecccccCC
Q 020787 103 ERYRTASQVVQNQGKMSCLMINDIDAGLG 131 (321)
Q Consensus 103 ~~F~~A~~~~~~~gaPcILFIDEIDAg~~ 131 (321)
++...+.+.+. ...|.+|+||++-+...
T Consensus 260 ~~l~~~~~~l~-~~~~~llVIDs~t~~~~ 287 (400)
T 3lda_A 260 RLLDAAAQMMS-ESRFSLIVVDSVMALYR 287 (400)
T ss_dssp HHHHHHHHHHH-HSCEEEEEEETGGGGCC
T ss_pred HHHHHHHHHHH-hcCCceEEecchhhhCc
Confidence 33344444333 35799999999988653
No 127
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.64 E-value=0.0001 Score=66.64 Aligned_cols=72 Identities=11% Similarity=0.081 Sum_probs=45.9
Q ss_pred HhccccCCCCcHHHHHHHHHHHc---CCceEEeeccc-------cccccCCCc-----HHHHHHHHHHHHhhhhhcCCce
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM---GIEPVIMSAGE-------LESERAGEP-----GKLIRERYRTASQVVQNQGKMS 119 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~---g~~~i~vs~~e-------L~s~~~GEs-----er~IR~~F~~A~~~~~~~gaPc 119 (321)
+.+++||||+|||+++..++..+ |...+.++... +.+. .|-+ -....++++.+.+... .+.|.
T Consensus 14 i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~sr-lG~~~~~~~~~~~~~i~~~i~~~~~-~~~~d 91 (223)
T 2b8t_A 14 IEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSR-TGTSLPSVEVESAPEILNYIMSNSF-NDETK 91 (223)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCC-CCCSSCCEEESSTHHHHHHHHSTTS-CTTCC
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHh-cCCCccccccCCHHHHHHHHHHHhh-CCCCC
Confidence 67889999999999998777665 55666664322 3332 3421 0122356666655432 35689
Q ss_pred EEEeecccc
Q 020787 120 CLMINDIDA 128 (321)
Q Consensus 120 ILFIDEIDA 128 (321)
+|+|||+--
T Consensus 92 vViIDEaQ~ 100 (223)
T 2b8t_A 92 VIGIDEVQF 100 (223)
T ss_dssp EEEECSGGG
T ss_pred EEEEecCcc
Confidence 999999965
No 128
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.63 E-value=2e-05 Score=65.86 Aligned_cols=34 Identities=18% Similarity=0.159 Sum_probs=28.6
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeeccccc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELE 90 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~ 90 (321)
++.|.||||||||++++++|+++|+.++. ..++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d--~d~~~ 39 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLD--SDFLI 39 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEE--HHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEc--ccHHH
Confidence 57899999999999999999999987764 44444
No 129
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.63 E-value=2.2e-05 Score=65.71 Aligned_cols=40 Identities=23% Similarity=0.280 Sum_probs=30.8
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeeccccccccCCC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGE 96 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~~~GE 96 (321)
+++|.||||||||++|+.+|+++|++++. ..++..+..|.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id--~D~~~~~~~g~ 43 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALGVGLLD--TDVAIEQRTGR 43 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTCCEEE--HHHHHHHHHSS
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCEEe--CchHHHHHcCC
Confidence 47899999999999999999999988764 44444333343
No 130
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.62 E-value=1.4e-05 Score=66.97 Aligned_cols=35 Identities=29% Similarity=0.374 Sum_probs=30.8
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeecccc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGEL 89 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL 89 (321)
+++|.||||||||++++++|+..+...+.+++.++
T Consensus 11 ~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~ 45 (191)
T 1zp6_A 11 ILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDL 45 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHH
T ss_pred EEEEECCCCCCHHHHHHHHHhccCCCeEEEcccch
Confidence 68899999999999999999998888888877654
No 131
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.62 E-value=4.7e-05 Score=63.75 Aligned_cols=31 Identities=29% Similarity=0.410 Sum_probs=26.6
Q ss_pred hccccCCCCcHHHHHHHHHHHc---CCceEEeec
Q 020787 56 LCIWGGKGQGKSFQTELIFQAM---GIEPVIMSA 86 (321)
Q Consensus 56 LgL~GPPGcGKTllaravA~e~---g~~~i~vs~ 86 (321)
++|.||||||||++|+.+++.+ |.+++....
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~~ 36 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKRE 36 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEES
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEeeC
Confidence 5789999999999999999999 998886643
No 132
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.60 E-value=2.3e-05 Score=66.98 Aligned_cols=33 Identities=27% Similarity=0.442 Sum_probs=27.1
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeeccccc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELE 90 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~ 90 (321)
+++|.||||||||++++.+|+ +|..++ ++.++.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg~~~i--d~d~~~ 36 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LGVPLV--DADVVA 36 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TTCCEE--EHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCccc--chHHHH
Confidence 579999999999999999988 887765 454443
No 133
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.60 E-value=5.9e-05 Score=67.52 Aligned_cols=35 Identities=17% Similarity=0.266 Sum_probs=31.0
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeecccc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGEL 89 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL 89 (321)
++.|.||||||||+++++++.+++...+.+++-.+
T Consensus 34 ~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 34 AILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp EEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 78999999999999999999999977777777665
No 134
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.58 E-value=0.00011 Score=66.25 Aligned_cols=32 Identities=25% Similarity=0.206 Sum_probs=28.7
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeec
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSA 86 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~ 86 (321)
++.|.||||+|||++|+++|+++++.++.++.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~ 34 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDR 34 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCS
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccH
Confidence 46899999999999999999999998887654
No 135
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.57 E-value=0.0001 Score=69.59 Aligned_cols=75 Identities=15% Similarity=0.135 Sum_probs=46.5
Q ss_pred HhccccCCCCcHHHHHHHHHHHc---------CCceEEeeccccccc--------cCC----------------CcHHHH
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM---------GIEPVIMSAGELESE--------RAG----------------EPGKLI 101 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~---------g~~~i~vs~~eL~s~--------~~G----------------Eser~I 101 (321)
+..|+||||||||.+|..+|... +-..+.++..+-++. -.| ..+..
T Consensus 124 i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~~~~e~~- 202 (343)
T 1v5w_A 124 ITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAYTSEHQ- 202 (343)
T ss_dssp EEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSTTHH-
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeecCCHHHH-
Confidence 77899999999999999999873 445566665442110 011 11211
Q ss_pred HHHHHHHHhhhhhc-CCceEEEeecccccC
Q 020787 102 RERYRTASQVVQNQ-GKMSCLMINDIDAGL 130 (321)
Q Consensus 102 R~~F~~A~~~~~~~-gaPcILFIDEIDAg~ 130 (321)
.++...+.+.++.. ..+.+|+||.|.+..
T Consensus 203 ~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~ 232 (343)
T 1v5w_A 203 MELLDYVAAKFHEEAGIFKLLIIDSIMALF 232 (343)
T ss_dssp HHHHHHHHHHHHHSCSSEEEEEEETSGGGH
T ss_pred HHHHHHHHHHHHhcCCCccEEEEechHHHH
Confidence 12333333333311 689999999999976
No 136
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.57 E-value=2.4e-05 Score=65.51 Aligned_cols=30 Identities=17% Similarity=0.275 Sum_probs=27.2
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEe
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIM 84 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~v 84 (321)
.++|.||||||||++++++|+.+|+.++.+
T Consensus 13 ~i~i~G~~GsGKst~~~~l~~~~~~~~~~~ 42 (180)
T 3iij_A 13 NILLTGTPGVGKTTLGKELASKSGLKYINV 42 (180)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred eEEEEeCCCCCHHHHHHHHHHHhCCeEEEH
Confidence 578999999999999999999999888754
No 137
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=97.57 E-value=6.6e-05 Score=62.43 Aligned_cols=31 Identities=19% Similarity=0.330 Sum_probs=27.6
Q ss_pred HhccccCCCCcHHHHHHHHHHHc---CCceEEee
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM---GIEPVIMS 85 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~---g~~~i~vs 85 (321)
+++|.|+||||||++++.+++++ |++++...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 36899999999999999999998 99888764
No 138
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.55 E-value=3.2e-05 Score=64.21 Aligned_cols=34 Identities=38% Similarity=0.560 Sum_probs=28.0
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeeccccc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELE 90 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~ 90 (321)
+++|.||||||||++|+.+++++|+.++ +..+++
T Consensus 5 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i--~~d~~~ 38 (196)
T 1tev_A 5 VVFVLGGPGAGKGTQCARIVEKYGYTHL--SAGELL 38 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCEEE--EHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEE--eHHHHH
Confidence 4689999999999999999999997654 444544
No 139
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.54 E-value=3e-05 Score=64.69 Aligned_cols=34 Identities=26% Similarity=0.494 Sum_probs=27.6
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeeccccc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELE 90 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~ 90 (321)
+++|.||||||||++++.+|+++|+.++ +.++++
T Consensus 6 ~I~l~G~~GsGKST~~~~La~~l~~~~i--~~d~~~ 39 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLAQELGFKKL--STGDIL 39 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEE--CHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEe--cHHHHH
Confidence 4689999999999999999999997654 444444
No 140
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.54 E-value=3.5e-05 Score=63.42 Aligned_cols=40 Identities=20% Similarity=0.272 Sum_probs=30.7
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeeccccccccCCC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGE 96 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~~~GE 96 (321)
+++|.||||||||++++.+|+.+|++++. ..++.....|.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id--~d~~~~~~~g~ 43 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALGYEFVD--TDIFMQHTSGM 43 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHTCEEEE--HHHHHHHHHCS
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEc--ccHHHHHHhCC
Confidence 57899999999999999999999987664 34444333343
No 141
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.54 E-value=6.8e-05 Score=67.68 Aligned_cols=43 Identities=12% Similarity=0.135 Sum_probs=30.1
Q ss_pred HHHHHhhhhhhccCccccchhhhhHhccccCCCCcHHHHHHHHHHHc
Q 020787 31 YRQKVTRSFEYLQGDYYIAPVFMASLCIWGGKGQGKSFQTELIFQAM 77 (321)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~p~f~~iLgL~GPPGcGKTllaravA~e~ 77 (321)
...+....++.+.+| +++ =++.+|+||||||||+++..+|..+
T Consensus 12 ~i~tg~~~ld~~lgg--l~~--G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 12 AFAAAPPPLDYVLPN--MVA--GTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp HHHSCCCCCCEEETT--EET--TSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred HhcCCCCChheeECC--ccC--CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 334455556666654 332 1478999999999999999988643
No 142
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.54 E-value=9.4e-05 Score=61.27 Aligned_cols=36 Identities=22% Similarity=0.226 Sum_probs=28.2
Q ss_pred HhccccCCCCcHHHHHHHHHHHcC---CceEEeeccccc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMG---IEPVIMSAGELE 90 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g---~~~i~vs~~eL~ 90 (321)
++.|.||||||||++|++++++++ .++..++.++++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~ 41 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFM 41 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECChHH
Confidence 467899999999999999999887 235555655554
No 143
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.53 E-value=2.5e-05 Score=65.53 Aligned_cols=34 Identities=38% Similarity=0.588 Sum_probs=28.0
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeeccccc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELE 90 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~ 90 (321)
+++|.||||||||++|+.+|+++|+.++ +.+++.
T Consensus 14 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i--~~d~~~ 47 (199)
T 2bwj_A 14 IIFIIGGPGSGKGTQCEKLVEKYGFTHL--STGELL 47 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTCEEE--EHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEE--cHHHHH
Confidence 6789999999999999999999996654 444444
No 144
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.53 E-value=2.6e-05 Score=65.33 Aligned_cols=30 Identities=33% Similarity=0.469 Sum_probs=26.7
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEe
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIM 84 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~v 84 (321)
+++|.||||||||++|+.+|+++|..++.+
T Consensus 11 ~I~l~G~~GsGKsT~~~~La~~l~~~~i~~ 40 (196)
T 2c95_A 11 IIFVVGGPGSGKGTQCEKIVQKYGYTHLST 40 (196)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 678999999999999999999999876544
No 145
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.51 E-value=3.1e-05 Score=64.21 Aligned_cols=49 Identities=29% Similarity=0.485 Sum_probs=33.9
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeecccccccc--CCC-cHHHHHHHH
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESER--AGE-PGKLIRERY 105 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~~--~GE-ser~IR~~F 105 (321)
+++|.||||||||++|+.+++.+|+.++. ..++.... .|. ..+.+++.|
T Consensus 8 ~I~l~G~~GsGKsT~~~~L~~~l~~~~i~--~d~~~~~~~~~~~~~~~~i~~~~ 59 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQCANIVRDFGWVHLS--AGDLLRQEQQSGSKDGEMIATMI 59 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCEEEE--HHHHHHHHHHTTCTTHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEee--HHHHHHHHHhcCCHHHHHHHHHH
Confidence 67899999999999999999999976654 34444321 122 234555555
No 146
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.51 E-value=3.2e-05 Score=66.41 Aligned_cols=29 Identities=28% Similarity=0.395 Sum_probs=25.7
Q ss_pred hccccCCCCcHHHHHHHHHHHcCCceEEe
Q 020787 56 LCIWGGKGQGKSFQTELIFQAMGIEPVIM 84 (321)
Q Consensus 56 LgL~GPPGcGKTllaravA~e~g~~~i~v 84 (321)
++|.||||+|||++|+.+|+++|+..+.+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 57899999999999999999999876644
No 147
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.51 E-value=9.7e-05 Score=60.68 Aligned_cols=29 Identities=21% Similarity=0.193 Sum_probs=23.8
Q ss_pred HhccccCCCCcHHHHHHHHHH-HcCCceEE
Q 020787 55 SLCIWGGKGQGKSFQTELIFQ-AMGIEPVI 83 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~-e~g~~~i~ 83 (321)
++.|.||||+|||++|+.+++ ..|+.++.
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~~~~~~~~i~ 33 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIAKNPGFYNIN 33 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHSTTEEEEC
T ss_pred EEEEecCCCCCHHHHHHHHHhhcCCcEEec
Confidence 467899999999999999999 56655443
No 148
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=97.51 E-value=8.5e-06 Score=82.45 Aligned_cols=118 Identities=13% Similarity=0.072 Sum_probs=65.9
Q ss_pred hccccCCCCcHHHHHHHH-HHHcCCceEEeec--c---ccc----cc--cCCCcHHHHHHHHHHHHhhhhhcCCceEEEe
Q 020787 56 LCIWGGKGQGKSFQTELI-FQAMGIEPVIMSA--G---ELE----SE--RAGEPGKLIRERYRTASQVVQNQGKMSCLMI 123 (321)
Q Consensus 56 LgL~GPPGcGKTllarav-A~e~g~~~i~vs~--~---eL~----s~--~~GEser~IR~~F~~A~~~~~~~gaPcILFI 123 (321)
++|.|+||| ||++++++ ++-+.- -+.+++ + .|. ++ |.-+++.. ..| .--|+||
T Consensus 242 VLL~G~PGt-KS~Lar~i~~~i~pR-~~ft~g~~ss~~gLt~s~r~~tG~~~~~G~l-----~LA--------dgGvl~l 306 (506)
T 3f8t_A 242 VLLAGYPVV-CSEILHHVLDHLAPR-GVYVDLRRTELTDLTAVLKEDRGWALRAGAA-----VLA--------DGGILAV 306 (506)
T ss_dssp EEEESCHHH-HHHHHHHHHHHTCSS-EEEEEGGGCCHHHHSEEEEESSSEEEEECHH-----HHT--------TTSEEEE
T ss_pred EEEECCCCh-HHHHHHHHHHHhCCC-eEEecCCCCCccCceEEEEcCCCcccCCCee-----EEc--------CCCeeeh
Confidence 789999999 99999999 554322 121211 0 111 11 22222322 122 1358999
Q ss_pred ecccccCCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCC-----------CccccCCC
Q 020787 124 NDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFS-----------TIYAPLIR 192 (321)
Q Consensus 124 DEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp~-----------~LDpALlR 192 (321)
|||+..-+ .+...|++-|..- .|.+.|. . ...+.-||+|+|..+ .|.+||+=
T Consensus 307 DEIn~~~~------------~~qsaLlEaMEe~-~VtI~G~--~--lparf~VIAA~NP~~~yd~~~s~~~~~Lp~alLD 369 (506)
T 3f8t_A 307 DHLEGAPE------------PHRWALMEAMDKG-TVTVDGI--A--LNARCAVLAAINPGEQWPSDPPIARIDLDQDFLS 369 (506)
T ss_dssp ECCTTCCH------------HHHHHHHHHHHHS-EEEETTE--E--EECCCEEEEEECCCC--CCSCGGGGCCSCHHHHT
T ss_pred HhhhhCCH------------HHHHHHHHHHhCC-cEEECCE--E--cCCCeEEEEEeCcccccCCCCCccccCCChHHhh
Confidence 99998632 2334555555422 2445553 2 235788999999876 66677776
Q ss_pred CCCCcceecC---CCHHH
Q 020787 193 DGRMEKFYWQ---PNLED 207 (321)
Q Consensus 193 pGRfDr~i~~---Pd~~~ 207 (321)
|||-.+.+ |+.+.
T Consensus 370 --RFDLi~i~~d~pd~e~ 385 (506)
T 3f8t_A 370 --HFDLIAFLGVDPRPGE 385 (506)
T ss_dssp --TCSEEEETTC------
T ss_pred --heeeEEEecCCCChhH
Confidence 99976543 66544
No 149
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.50 E-value=3.5e-05 Score=65.74 Aligned_cols=30 Identities=23% Similarity=0.396 Sum_probs=26.7
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEe
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIM 84 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~v 84 (321)
+++|.||||||||++|+.+++++|+.++.+
T Consensus 22 ~I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 22 RVLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 678999999999999999999999876543
No 150
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.50 E-value=3.7e-05 Score=66.10 Aligned_cols=29 Identities=34% Similarity=0.457 Sum_probs=25.5
Q ss_pred hccccCCCCcHHHHHHHHHHHcCCceEEe
Q 020787 56 LCIWGGKGQGKSFQTELIFQAMGIEPVIM 84 (321)
Q Consensus 56 LgL~GPPGcGKTllaravA~e~g~~~i~v 84 (321)
++|.||||+|||++|+.+|+++|+..+.+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 57899999999999999999998776544
No 151
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.50 E-value=2.8e-05 Score=66.03 Aligned_cols=30 Identities=27% Similarity=0.402 Sum_probs=26.4
Q ss_pred HhccccCCCCcHHHHHHHHHHH-cCCceEEe
Q 020787 55 SLCIWGGKGQGKSFQTELIFQA-MGIEPVIM 84 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e-~g~~~i~v 84 (321)
+++|.||||||||++++++|+. +|++++.+
T Consensus 12 ~I~l~G~~GsGKSTv~~~La~~l~g~~~id~ 42 (184)
T 1y63_A 12 NILITGTPGTGKTSMAEMIAAELDGFQHLEV 42 (184)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSTTEEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCCEEeeH
Confidence 6899999999999999999999 78777643
No 152
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.48 E-value=2.7e-05 Score=64.61 Aligned_cols=24 Identities=17% Similarity=0.346 Sum_probs=22.4
Q ss_pred HhccccCCCCcHHHHHHHHHHHcC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMG 78 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g 78 (321)
++.|.||||||||++++.++++++
T Consensus 5 ~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 5 VVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 468999999999999999999988
No 153
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.48 E-value=4.5e-05 Score=65.64 Aligned_cols=34 Identities=21% Similarity=0.296 Sum_probs=28.8
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeeccccc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELE 90 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~ 90 (321)
+++|.||||||||++++.+++.+|++++ +.+++.
T Consensus 7 ~i~i~G~~GsGKSTl~~~L~~~~g~~~~--d~g~i~ 40 (227)
T 1cke_A 7 VITIDGPSGAGKGTLCKAMAEALQWHLL--DSGAIY 40 (227)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCEEE--EHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCcc--cCccee
Confidence 5799999999999999999999997664 555555
No 154
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.48 E-value=3.7e-05 Score=65.39 Aligned_cols=35 Identities=26% Similarity=0.452 Sum_probs=28.9
Q ss_pred hHhccccCCCCcHHHHHHHHHHHcCCceEEeeccccc
Q 020787 54 ASLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELE 90 (321)
Q Consensus 54 ~iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~ 90 (321)
.+++|.||||||||++|+.+|+++|+.++.+ ++++
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~--d~~~ 50 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKDYSFVHLSA--GDLL 50 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSSCEEEEH--HHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCceEEeH--HHHH
Confidence 4789999999999999999999999766543 4444
No 155
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.47 E-value=4.5e-05 Score=67.72 Aligned_cols=35 Identities=26% Similarity=0.402 Sum_probs=29.0
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeecccccc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELES 91 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s 91 (321)
++.|.||||+|||++|+.+|++.|+. ++|.++|+.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~--~istGdllR 36 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFV--HISTGDILR 36 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCE--EEEHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCe--EEcHHHHHH
Confidence 46688999999999999999999875 566676664
No 156
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.47 E-value=4.5e-05 Score=63.67 Aligned_cols=29 Identities=10% Similarity=0.193 Sum_probs=26.2
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEE
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVI 83 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~ 83 (321)
++.|.||||||||++++.+++++|..++.
T Consensus 7 ~I~l~G~~GsGKST~~~~L~~~l~~~~i~ 35 (193)
T 2rhm_A 7 LIIVTGHPATGKTTLSQALATGLRLPLLS 35 (193)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEec
Confidence 46789999999999999999999987765
No 157
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.46 E-value=6.4e-05 Score=63.48 Aligned_cols=18 Identities=28% Similarity=0.399 Sum_probs=16.8
Q ss_pred HhccccCCCCcHHHHHHH
Q 020787 55 SLCIWGGKGQGKSFQTEL 72 (321)
Q Consensus 55 iLgL~GPPGcGKTllara 72 (321)
+++|.||+|||||+++++
T Consensus 11 i~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 689999999999999994
No 158
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.45 E-value=3.7e-05 Score=64.90 Aligned_cols=31 Identities=16% Similarity=0.139 Sum_probs=27.0
Q ss_pred HhccccCCCCcHHHHHHHHHHHc-CCceEEee
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM-GIEPVIMS 85 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~-g~~~i~vs 85 (321)
++.|.||||||||++++.+++++ |.+++.+.
T Consensus 6 ~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~ 37 (204)
T 2v54_A 6 LIVFEGLDKSGKTTQCMNIMESIPANTIKYLN 37 (204)
T ss_dssp EEEEECCTTSSHHHHHHHHHHTSCGGGEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHCCCceEEEe
Confidence 46789999999999999999998 67777764
No 159
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.45 E-value=0.0002 Score=66.70 Aligned_cols=75 Identities=9% Similarity=0.104 Sum_probs=47.9
Q ss_pred HhccccCCCCcHHHHHHHHHHHc---------CCceEEeeccccccc--------cCCC----------------cHHHH
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM---------GIEPVIMSAGELESE--------RAGE----------------PGKLI 101 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~---------g~~~i~vs~~eL~s~--------~~GE----------------ser~I 101 (321)
+..|+||||||||.+|..+|..+ +-..+.++..+-+++ -.|- ++. +
T Consensus 109 i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~~~~~-~ 187 (324)
T 2z43_A 109 MTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAINTDH-Q 187 (324)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSHHH-H
T ss_pred EEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeCCCHHH-H
Confidence 67899999999999999999875 445566665442110 0111 121 1
Q ss_pred HHHHHHHHhhhhhcCCceEEEeecccccC
Q 020787 102 RERYRTASQVVQNQGKMSCLMINDIDAGL 130 (321)
Q Consensus 102 R~~F~~A~~~~~~~gaPcILFIDEIDAg~ 130 (321)
.++...+.+.++....|.+|+||.|.+..
T Consensus 188 ~~~l~~l~~~~~~~~~~~lvVIDsl~~l~ 216 (324)
T 2z43_A 188 IAIVDDLQELVSKDPSIKLIVVDSVTSHF 216 (324)
T ss_dssp HHHHHHHHHHHHHCTTEEEEEETTTTHHH
T ss_pred HHHHHHHHHHHHhccCCCEEEEeCcHHHh
Confidence 23344444444312689999999999965
No 160
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.45 E-value=5.4e-05 Score=62.87 Aligned_cols=34 Identities=18% Similarity=0.192 Sum_probs=27.8
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeeccccc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELE 90 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~ 90 (321)
+++|.||||||||+++++++..+|..+ +++.++.
T Consensus 10 ~i~l~G~~GsGKSTl~~~l~~~~g~~~--i~~d~~~ 43 (175)
T 1knq_A 10 IYVLMGVSGSGKSAVASEVAHQLHAAF--LDGDFLH 43 (175)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHTCEE--EEGGGGC
T ss_pred EEEEEcCCCCCHHHHHHHHHHhhCcEE--EeCcccc
Confidence 688999999999999999999998654 4555443
No 161
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.44 E-value=5.6e-05 Score=64.51 Aligned_cols=34 Identities=32% Similarity=0.377 Sum_probs=28.6
Q ss_pred hHhccccCCCCcHHHHHHHHHHHcCCceEEeecccc
Q 020787 54 ASLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGEL 89 (321)
Q Consensus 54 ~iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL 89 (321)
.+++|.||||+|||++|+.+++.+|+.++. +.++
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~lg~~~i~--~d~~ 52 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEACGYPFIE--GDAL 52 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHHTCCEEE--GGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCEEEe--CCcC
Confidence 378999999999999999999999977654 4444
No 162
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.44 E-value=3.8e-05 Score=63.73 Aligned_cols=28 Identities=21% Similarity=0.221 Sum_probs=22.3
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceE
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPV 82 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i 82 (321)
++.|.|+||||||++|+.+++++|.+++
T Consensus 7 ~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 7 IIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp EEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 5789999999999999999999999877
No 163
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.44 E-value=5.8e-05 Score=61.97 Aligned_cols=40 Identities=23% Similarity=0.188 Sum_probs=30.6
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeeccccccccCCC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGE 96 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~~~GE 96 (321)
+++|.|+||||||++++.+++++|++++. ..++.....|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~--~d~~~~~~~g~ 41 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYD--VDEEVQKREGL 41 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEE--HHHHHHHHHTS
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEE--CcHHHHHHcCC
Confidence 36799999999999999999999987764 44444443443
No 164
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.43 E-value=7.6e-05 Score=64.60 Aligned_cols=31 Identities=13% Similarity=0.014 Sum_probs=22.2
Q ss_pred HhccccCCCCcHHHHHHHHHHH---cCCceEEee
Q 020787 55 SLCIWGGKGQGKSFQTELIFQA---MGIEPVIMS 85 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e---~g~~~i~vs 85 (321)
+..++||||+|||+++..++.. .|...+.++
T Consensus 5 i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~ 38 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFK 38 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 4579999999999998555544 355555443
No 165
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.43 E-value=6.4e-05 Score=63.94 Aligned_cols=49 Identities=18% Similarity=0.171 Sum_probs=33.1
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeeccccccccCCCcHHHHHHHHH
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYR 106 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~~~GEser~IR~~F~ 106 (321)
+++|.||||||||++++.+|+ +|+.++. ..++...........+.++++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~--~d~~~~~~~~~~~~~~~~i~~ 51 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLD--ADKLIHSFYRKGHPVYEEVVK 51 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEE--HHHHHHGGGSSSSHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEE--ccHHHHHHhcCCHHHHHHHHH
Confidence 578999999999999999999 8866654 444444333222334444443
No 166
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=97.43 E-value=0.00043 Score=68.81 Aligned_cols=105 Identities=22% Similarity=0.215 Sum_probs=70.7
Q ss_pred CcHHHHHHHHHHHHhhhhhcCCceEEEeecccccCCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCcc
Q 020787 96 EPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIP 175 (321)
Q Consensus 96 Eser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~ 175 (321)
..+...++..+.|.. -.||||||||.++.+.++.+.++...-|+..||.++|+-+ +.. .|...+ +++|.
T Consensus 236 ~~~~~~~~ai~~ae~-------~~il~~DEidki~~~~~~~~~D~s~egvq~aLL~~le~~~-~~~--~~~~~d-~~~il 304 (444)
T 1g41_A 236 NPEELKQKAIDAVEQ-------NGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGST-VST--KHGMVK-TDHIL 304 (444)
T ss_dssp CHHHHHHHHHHHHHH-------HCEEEEETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCE-EEE--TTEEEE-CTTCE
T ss_pred CHHHHHHHHHHHhcc-------CCeeeHHHHHHHhhccCCCCCCchHHHHHHHHHHHhcccc-ccc--ccceec-CCcEE
Confidence 345566666666532 3689999999998654434455655568889999999642 221 122233 56899
Q ss_pred EEEee----CCCCCccccCCCCCCCcceecC--CCHHHHHHHHH
Q 020787 176 IIFTG----NDFSTIYAPLIRDGRMEKFYWQ--PNLEDILNIVH 213 (321)
Q Consensus 176 VIaaT----Nrp~~LDpALlRpGRfDr~i~~--Pd~~~R~~Il~ 213 (321)
+|+|+ +.|..+-|+|+ |||+..+.+ .+.++...|+.
T Consensus 305 fI~~gaf~~~~~~dlipel~--~R~~i~i~l~~lt~~e~~~Il~ 346 (444)
T 1g41_A 305 FIASGAFQVARPSDLIPELQ--GRLPIRVELTALSAADFERILT 346 (444)
T ss_dssp EEEEECCSSCCGGGSCHHHH--TTCCEEEECCCCCHHHHHHHHH
T ss_pred EEeccccccCChhhcchHHh--cccceeeeCCCCCHHHHHHHHH
Confidence 99987 34555557766 499987776 48899999983
No 167
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.41 E-value=0.00025 Score=68.55 Aligned_cols=77 Identities=10% Similarity=0.057 Sum_probs=47.5
Q ss_pred HhccccCCCCcHHHHHHHHHHHc-----CCceEEeeccccccc----cCCCc--------HHHHHHH-HHHHHhh--hhh
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM-----GIEPVIMSAGELESE----RAGEP--------GKLIRER-YRTASQV--VQN 114 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~-----g~~~i~vs~~eL~s~----~~GEs--------er~IR~~-F~~A~~~--~~~ 114 (321)
+..|+||||||||+||-.++.++ |-..+-+++.+=.+. -.|-. +...-++ +..+..+ ++
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l~~i~- 108 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQLDAIE- 108 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHHHHTCC-
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHHHHHhh-
Confidence 36899999999999986665543 566777777553331 11210 0112222 3332222 22
Q ss_pred cCCceEEEeecccccCCC
Q 020787 115 QGKMSCLMINDIDAGLGR 132 (321)
Q Consensus 115 ~gaPcILFIDEIDAg~~r 132 (321)
.++|.+|+||=|-+..++
T Consensus 109 ~~~~~lvVIDSI~aL~~~ 126 (333)
T 3io5_A 109 RGEKVVVFIDSLGNLASK 126 (333)
T ss_dssp TTCCEEEEEECSTTCBCC
T ss_pred ccCceEEEEecccccccc
Confidence 578999999999998754
No 168
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.40 E-value=5.5e-05 Score=65.53 Aligned_cols=35 Identities=17% Similarity=0.311 Sum_probs=28.2
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeecccccc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELES 91 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s 91 (321)
.+.|.||||||||++|+.+|+.+++.++. ..+++.
T Consensus 6 ~I~l~G~~GsGKsT~a~~La~~l~~~~i~--~d~~~~ 40 (220)
T 1aky_A 6 RMVLIGPPGAGKGTQAPNLQERFHAAHLA--TGDMLR 40 (220)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCEEEE--HHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCceEEe--hhHHHH
Confidence 46789999999999999999999986654 344443
No 169
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.40 E-value=0.00015 Score=61.00 Aligned_cols=26 Identities=27% Similarity=0.337 Sum_probs=23.7
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIE 80 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~ 80 (321)
++.|.||||||||++|++++++++..
T Consensus 6 ~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 6 LIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 46799999999999999999999874
No 170
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.39 E-value=4.7e-05 Score=66.40 Aligned_cols=30 Identities=20% Similarity=0.271 Sum_probs=26.2
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEe
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIM 84 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~v 84 (321)
.+.|.||||||||++|+.+|+++|+.++.+
T Consensus 9 ~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 38 (227)
T 1zd8_A 9 RAVIMGAPGSGKGTVSSRITTHFELKHLSS 38 (227)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHSSSEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEEec
Confidence 478999999999999999999999766543
No 171
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.39 E-value=0.00013 Score=69.99 Aligned_cols=67 Identities=13% Similarity=0.183 Sum_probs=42.5
Q ss_pred HhccccCCCCcHHHHHHHHHHHcC----CceEEeec-cccc---------cccCCCcHHHHHHHHHHHHhhhhhcCCceE
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMG----IEPVIMSA-GELE---------SERAGEPGKLIRERYRTASQVVQNQGKMSC 120 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g----~~~i~vs~-~eL~---------s~~~GEser~IR~~F~~A~~~~~~~gaPcI 120 (321)
+++|.||+|||||++.++++.... -.++.+.- .|+. ...+|.......+..+.|. ...|.+
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL-----~~~Pdv 199 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSAL-----REDPDI 199 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHT-----TSCCSE
T ss_pred EEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHh-----hhCcCE
Confidence 789999999999999999988763 33333322 1211 1122332233444444444 348999
Q ss_pred EEeecc
Q 020787 121 LMINDI 126 (321)
Q Consensus 121 LFIDEI 126 (321)
|++||+
T Consensus 200 illDEp 205 (356)
T 3jvv_A 200 ILVGEM 205 (356)
T ss_dssp EEESCC
T ss_pred EecCCC
Confidence 999998
No 172
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.39 E-value=0.00018 Score=61.62 Aligned_cols=35 Identities=23% Similarity=0.256 Sum_probs=28.4
Q ss_pred HhccccCCCCcHHHHHHHHHHHc---CCceEEeecccc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM---GIEPVIMSAGEL 89 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~---g~~~i~vs~~eL 89 (321)
++.|.||+|||||++++++|..+ |...+.+.+-++
T Consensus 27 ~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 27 VIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNV 64 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchh
Confidence 68899999999999999999998 554445665554
No 173
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.38 E-value=6.4e-05 Score=64.46 Aligned_cols=34 Identities=21% Similarity=0.366 Sum_probs=28.2
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeeccccc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELE 90 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~ 90 (321)
+++|.||||||||++++++++.+|.. .+++.++.
T Consensus 31 ~i~l~G~~GsGKSTl~~~L~~~~g~~--~i~~d~~~ 64 (200)
T 4eun_A 31 HVVVMGVSGSGKTTIAHGVADETGLE--FAEADAFH 64 (200)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCE--EEEGGGGS
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCCe--EEcccccc
Confidence 78999999999999999999999764 45555553
No 174
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.35 E-value=5.5e-05 Score=68.10 Aligned_cols=36 Identities=31% Similarity=0.491 Sum_probs=30.6
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeeccccccc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESE 92 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~ 92 (321)
|+.|.||||||||++|+.+|+++|+ .++|.++++..
T Consensus 31 iI~llGpPGsGKgTqa~~L~~~~g~--~hIstGdllR~ 66 (217)
T 3umf_A 31 VIFVLGGPGSGKGTQCEKLVQKFHF--NHLSSGDLLRA 66 (217)
T ss_dssp EEEEECCTTCCHHHHHHHHHHHHCC--EEECHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC--ceEcHHHHHHH
Confidence 7888999999999999999999976 45677777654
No 175
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.34 E-value=8.4e-05 Score=67.99 Aligned_cols=67 Identities=16% Similarity=0.289 Sum_probs=42.8
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCc---eEEeecccc-----------ccccCCCcHHHHHHHHHHHHhhhhhcCCceE
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIE---PVIMSAGEL-----------ESERAGEPGKLIRERYRTASQVVQNQGKMSC 120 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~---~i~vs~~eL-----------~s~~~GEser~IR~~F~~A~~~~~~~gaPcI 120 (321)
+++|.||+|||||++.++++...... -|.+.+-.+ ....+|.....+|...+.|... .|.+
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~~~v~q~~~gl~~~~l~~~la~aL~~-----~p~i 101 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALRE-----DPDV 101 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHHHH-----CCSE
T ss_pred EEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCcceeeeHHHhCCCHHHHHHHHHHHHhh-----CCCE
Confidence 78999999999999999999865321 222222111 1112222223456666666533 7999
Q ss_pred EEeecc
Q 020787 121 LMINDI 126 (321)
Q Consensus 121 LFIDEI 126 (321)
|++||.
T Consensus 102 lllDEp 107 (261)
T 2eyu_A 102 IFVGEM 107 (261)
T ss_dssp EEESCC
T ss_pred EEeCCC
Confidence 999998
No 176
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=97.34 E-value=0.00058 Score=63.10 Aligned_cols=145 Identities=10% Similarity=0.094 Sum_probs=87.9
Q ss_pred HhccccCCCCcHHHHHHHHHHHc---CC-ceEEeeccccccccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeecccccC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM---GI-EPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGL 130 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~---g~-~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~ 130 (321)
.++||||+|.||+..++++++.+ +. ++..+. +-| +..+|++.+.|.... .-+..-|++|||.|...
T Consensus 20 ~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~-------~~~--~~~~~~l~~~~~~~p-lf~~~kvvii~~~~~kl 89 (343)
T 1jr3_D 20 AYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFS-------IDP--NTDWNAIFSLCQAMS-LFASRQTLLLLLPENGP 89 (343)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEE-------CCT--TCCHHHHHHHHHHHH-HCCSCEEEEEECCSSCC
T ss_pred EEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEE-------ecC--CCCHHHHHHHhcCcC-CccCCeEEEEECCCCCC
Confidence 67899999999999999998865 32 212221 112 234677777775432 13567899999998722
Q ss_pred CCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCC------CCccccCCCCCCCcceecCCC
Q 020787 131 GRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDF------STIYAPLIRDGRMEKFYWQPN 204 (321)
Q Consensus 131 ~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNrp------~~LDpALlRpGRfDr~i~~Pd 204 (321)
.+ . ....|+..+.+| .+.+.+|.+|+.+ ..+.+++.-.|.. -.++.|+
T Consensus 90 ~~----~-------~~~aLl~~le~p--------------~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~-~~~~~l~ 143 (343)
T 1jr3_D 90 NA----A-------INEQLLTLTGLL--------------HDDLLLIVRGNKLSKAQENAAWFTALANRSVQ-VTCQTPE 143 (343)
T ss_dssp CT----T-------HHHHHHHHHTTC--------------BTTEEEEEEESCCCTTTTTSHHHHHHTTTCEE-EEECCCC
T ss_pred Ch----H-------HHHHHHHHHhcC--------------CCCeEEEEEcCCCChhhHhhHHHHHHHhCceE-EEeeCCC
Confidence 11 0 112355555543 2355566555554 3467776654421 1223467
Q ss_pred HHHHHHHHHHHhhcCC--CCHHHHHHhhhCCCC
Q 020787 205 LEDILNIVHRMYEKDG--ITKDEVGSIVKTFPN 235 (321)
Q Consensus 205 ~~~R~~Il~~~~~~~~--l~~~dl~~L~d~f~g 235 (321)
..+....++..++..+ ++.+.+..|+....|
T Consensus 144 ~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g 176 (343)
T 1jr3_D 144 QAQLPRWVAARAKQLNLELDDAANQVLCYCYEG 176 (343)
T ss_dssp TTHHHHHHHHHHHHTTCEECHHHHHHHHHSSTT
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhch
Confidence 7888888877777665 566777777766555
No 177
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.33 E-value=0.00031 Score=64.77 Aligned_cols=22 Identities=18% Similarity=-0.005 Sum_probs=20.3
Q ss_pred HhccccCCCCcHHHHHHHHHHH
Q 020787 55 SLCIWGGKGQGKSFQTELIFQA 76 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e 76 (321)
+..|+||||+|||.+|..+|..
T Consensus 100 i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 100 VTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7889999999999999998876
No 178
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.33 E-value=7.8e-05 Score=64.87 Aligned_cols=35 Identities=29% Similarity=0.503 Sum_probs=28.1
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeecccccc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELES 91 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s 91 (321)
.+.|.||||||||++|+++|+++|+.++.+ ++++.
T Consensus 7 ~I~l~G~~GsGKsT~a~~La~~l~~~~i~~--d~li~ 41 (217)
T 3be4_A 7 NLILIGAPGSGKGTQCEFIKKEYGLAHLST--GDMLR 41 (217)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHCCEEEEH--HHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCceEEeh--hHHHH
Confidence 357899999999999999999999776654 44443
No 179
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=97.32 E-value=0.00058 Score=58.72 Aligned_cols=48 Identities=21% Similarity=0.337 Sum_probs=30.6
Q ss_pred Hhhhhhhcc-CccccchhhhhHhccccCCCCcHHHHHHHHHH----HcCCceEEeec
Q 020787 35 VTRSFEYLQ-GDYYIAPVFMASLCIWGGKGQGKSFQTELIFQ----AMGIEPVIMSA 86 (321)
Q Consensus 35 ~~~~~~~~~-~~~~~~p~f~~iLgL~GPPGcGKTllaravA~----e~g~~~i~vs~ 86 (321)
+...++.+- ||+ ||- .+..|+||||+|||.+|-.+|. +.+-+.+.++.
T Consensus 15 Gi~~LD~~l~GGl--~~G--~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~ 67 (251)
T 2zts_A 15 GIPGFDELIEGGF--PEG--TTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp SCTTTGGGTTTSE--ETT--CEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CcHHHHHhhcCCC--CCC--eEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecc
Confidence 445566655 454 222 3678999999999999876543 33555555543
No 180
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.32 E-value=8.6e-05 Score=65.28 Aligned_cols=34 Identities=18% Similarity=0.309 Sum_probs=28.3
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeeccccc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELE 90 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~ 90 (321)
.+.|.||||||||++|+++|+++++.++. ..+++
T Consensus 18 ~I~l~G~~GsGKsT~a~~La~~l~~~~i~--~d~li 51 (233)
T 1ak2_A 18 RAVLLGPPGAGKGTQAPKLAKNFCVCHLA--TGDML 51 (233)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCEEEE--HHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceec--HHHHH
Confidence 57889999999999999999999977655 34444
No 181
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=97.31 E-value=9.6e-05 Score=62.37 Aligned_cols=29 Identities=24% Similarity=0.260 Sum_probs=26.5
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEE
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVI 83 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~ 83 (321)
+++|.||||||||++++++|+.+|++++.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d 32 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLS 32 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceec
Confidence 57899999999999999999999987765
No 182
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.31 E-value=7.2e-05 Score=66.86 Aligned_cols=36 Identities=25% Similarity=0.290 Sum_probs=29.1
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeeccccccc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESE 92 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~ 92 (321)
+++|.||||+|||++|+.+++++|+..+ +.++++.+
T Consensus 31 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i--s~~~~~r~ 66 (243)
T 3tlx_A 31 RYIFLGAPGSGKGTQSLNLKKSHCYCHL--STGDLLRE 66 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCEEE--EHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEE--ecHHHHHH
Confidence 5789999999999999999999986554 55555443
No 183
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.31 E-value=7.9e-05 Score=65.19 Aligned_cols=23 Identities=17% Similarity=0.231 Sum_probs=21.1
Q ss_pred HhccccCCCCcHHHHHHHHHHHc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM 77 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~ 77 (321)
+++|.||+|||||++++.++..+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 46899999999999999999876
No 184
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.30 E-value=0.00015 Score=66.85 Aligned_cols=36 Identities=17% Similarity=0.326 Sum_probs=30.2
Q ss_pred hHhccccCCCCcHHHHHHHHHHHcCCceEEeecccc
Q 020787 54 ASLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGEL 89 (321)
Q Consensus 54 ~iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL 89 (321)
.++.|.||||||||++|++++++++...++||+-.+
T Consensus 34 ~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~ 69 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTF 69 (287)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHh
Confidence 378899999999999999999999666677776444
No 185
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=97.29 E-value=0.00042 Score=66.26 Aligned_cols=33 Identities=15% Similarity=0.235 Sum_probs=29.7
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeecc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAG 87 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~ 87 (321)
++.|.||+|||||++++++|++++..+|.+..-
T Consensus 7 ~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~ 39 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMALADALPCELISVDSA 39 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHSCEEEEEECTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEeccch
Confidence 578999999999999999999999999888653
No 186
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.28 E-value=9.9e-05 Score=61.84 Aligned_cols=28 Identities=32% Similarity=0.450 Sum_probs=25.4
Q ss_pred hccccCCCCcHHHHHHHHHHHcCCceEE
Q 020787 56 LCIWGGKGQGKSFQTELIFQAMGIEPVI 83 (321)
Q Consensus 56 LgL~GPPGcGKTllaravA~e~g~~~i~ 83 (321)
+.|.||||||||++++++|+.++..++.
T Consensus 3 I~i~G~~GsGKsT~~~~L~~~l~~~~~~ 30 (205)
T 2jaq_A 3 IAIFGTVGAGKSTISAEISKKLGYEIFK 30 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHCCEEEC
T ss_pred EEEECCCccCHHHHHHHHHHhcCCcEEc
Confidence 5789999999999999999999987664
No 187
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.28 E-value=0.00081 Score=80.17 Aligned_cols=136 Identities=15% Similarity=0.139 Sum_probs=86.8
Q ss_pred ccccCCCCcHHHHHHHHHHHcCCceEEeeccccccccCCCcHHHHHHHHHHHHhhhhhcCCceEEEeecccccCCCCCCC
Q 020787 57 CIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNT 136 (321)
Q Consensus 57 gL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~~gaPcILFIDEIDAg~~r~~~t 136 (321)
.+.||+|||||-+++.+|+.+|..++++++++=++ .+.+-.+|.-+.+. -+...|||++.+-.. .
T Consensus 608 ~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d------~~~~g~i~~G~~~~------GaW~cfDEfNrl~~~---v 672 (3245)
T 3vkg_A 608 NPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFD------LQAMSRIFVGLCQC------GAWGCFDEFNRLEER---I 672 (3245)
T ss_dssp EEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCC------HHHHHHHHHHHHHH------TCEEEEETTTSSCHH---H
T ss_pred CCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCC------HHHHHHHHhhHhhc------CcEEEehhhhcCCHH---H
Confidence 47899999999999999999999999999987665 46677788777643 345567999986321 1
Q ss_pred ccchhhHHHHHHHHhhcCCCCccccC-ccccccCCCCCccEEEeeC----CCCCccccCCCCCCCcce-ecCCCHHHHHH
Q 020787 137 QMTVNNQIVVGTLMNLSDNPTRVSIG-QDWRESDITNRIPIIFTGN----DFSTIYAPLIRDGRMEKF-YWQPNLEDILN 210 (321)
Q Consensus 137 ~~~v~~q~V~~tLl~llD~~~~vql~-g~~~~~~~~~~V~VIaaTN----rp~~LDpALlRpGRfDr~-i~~Pd~~~R~~ 210 (321)
-+ +-.+.+......+.++...+.+. |. .-...+..-|++|-| .-..|+.+|.. ||=-. +-+||.+...+
T Consensus 673 LS-vv~~qi~~I~~a~~~~~~~~~~~~G~--~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~--lFr~v~m~~Pd~~~i~e 747 (3245)
T 3vkg_A 673 LS-AVSQQIQTIQVALKENSKEVELLGGK--NISLHQDMGIFVTMNPGYAGRSNLPDNLKK--LFRSMAMIKPDREMIAQ 747 (3245)
T ss_dssp HH-HHHHHHHHHHHHHHHTCSEECCC-----CEECCTTCEEEECBCCCGGGCCCSCHHHHT--TEEEEECCSCCHHHHHH
T ss_pred HH-HHHHHHHHHHHHHHcCCCeEEecCCC--EEeecCCeEEEEEeCCCccCcccChHHHHh--hcEEEEEeCCCHHHHHH
Confidence 11 11122222222233455555555 41 122245677888888 34577777776 54221 22599887777
Q ss_pred HH
Q 020787 211 IV 212 (321)
Q Consensus 211 Il 212 (321)
|+
T Consensus 748 i~ 749 (3245)
T 3vkg_A 748 VM 749 (3245)
T ss_dssp HH
T ss_pred HH
Confidence 75
No 188
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.28 E-value=0.00038 Score=58.53 Aligned_cols=35 Identities=11% Similarity=0.121 Sum_probs=27.1
Q ss_pred HhccccCCCCcHHHHHHHHHHHcC---CceEEeecccc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMG---IEPVIMSAGEL 89 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g---~~~i~vs~~eL 89 (321)
++.|.|+||||||++++++|..++ ..++.+++..+
T Consensus 15 ~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~ 52 (186)
T 2yvu_A 15 VVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWA 52 (186)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHH
Confidence 567899999999999999999875 33555555444
No 189
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.28 E-value=9.9e-05 Score=63.79 Aligned_cols=29 Identities=24% Similarity=0.450 Sum_probs=25.6
Q ss_pred hccccCCCCcHHHHHHHHHHHcCCceEEe
Q 020787 56 LCIWGGKGQGKSFQTELIFQAMGIEPVIM 84 (321)
Q Consensus 56 LgL~GPPGcGKTllaravA~e~g~~~i~v 84 (321)
+.|.||||||||++|+.+|+++|+.++.+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 57899999999999999999999776554
No 190
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.27 E-value=0.00028 Score=69.41 Aligned_cols=21 Identities=29% Similarity=0.275 Sum_probs=19.1
Q ss_pred HhccccCCCCcHHHHHHHHHH
Q 020787 55 SLCIWGGKGQGKSFQTELIFQ 75 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~ 75 (321)
.++|+||+|+|||.||+.++.
T Consensus 149 ~v~I~G~~GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 149 WVTIHGMAGCGKSVLAAEAVR 169 (591)
T ss_dssp EEEEECCTTSSHHHHHHHHHC
T ss_pred eEEEEcCCCCCHHHHHHHHHh
Confidence 578999999999999999875
No 191
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.27 E-value=0.00017 Score=62.58 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=22.7
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGI 79 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~ 79 (321)
+++|.||+|+|||+++++++..+..
T Consensus 10 ~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred EEEEECcCCCCHHHHHHHHHhhCCC
Confidence 6789999999999999999998853
No 192
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=97.26 E-value=9e-05 Score=67.74 Aligned_cols=35 Identities=31% Similarity=0.576 Sum_probs=29.3
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeecccccc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELES 91 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s 91 (321)
.|||.||||+|||++|+.+|+++|+..| +.++++.
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~g~~~i--s~gdllR 44 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKFGIPQI--STGDMLR 44 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCCEE--CHHHHHH
T ss_pred ceeeECCCCCCHHHHHHHHHHHhCCCee--echHHHH
Confidence 5899999999999999999999987765 5555554
No 193
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.25 E-value=0.00013 Score=61.07 Aligned_cols=34 Identities=18% Similarity=0.271 Sum_probs=29.7
Q ss_pred HhccccCCCCcHHHHHHHHHHHc---CCceEEeeccc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM---GIEPVIMSAGE 88 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~---g~~~i~vs~~e 88 (321)
+++|.|++|||||+++++++..+ |.+++.+.+-.
T Consensus 7 ~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~ 43 (179)
T 2pez_A 7 TVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDN 43 (179)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChH
Confidence 46799999999999999999998 99998887543
No 194
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.25 E-value=0.00062 Score=66.33 Aligned_cols=31 Identities=19% Similarity=0.094 Sum_probs=23.9
Q ss_pred HhccccCCCCcHHHHHHHHHHHc----CCceEEee
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM----GIEPVIMS 85 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~----g~~~i~vs 85 (321)
..+|.||||+|||++|..+|..+ |.+.+.++
T Consensus 205 liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s 239 (454)
T 2r6a_A 205 LIIVAARPSVGKTAFALNIAQNVATKTNENVAIFS 239 (454)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 77899999999999998877643 54555544
No 195
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.24 E-value=0.00012 Score=64.80 Aligned_cols=35 Identities=29% Similarity=0.424 Sum_probs=28.9
Q ss_pred hHhccccCCCCcHHHHHHHHHHHcCCceEEeeccccc
Q 020787 54 ASLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELE 90 (321)
Q Consensus 54 ~iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~ 90 (321)
.+++|.||||||||++++++|+++|...+ +.+++.
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La~~lg~~~~--~~G~i~ 62 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIAQNFGLQHL--SSGHFL 62 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCCCCE--EHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeEe--cHHHHH
Confidence 47899999999999999999999998654 344443
No 196
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=97.23 E-value=0.00029 Score=70.74 Aligned_cols=68 Identities=21% Similarity=0.371 Sum_probs=45.4
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCC--ceEEeeccccccccCCCcHHHHHHHHHHH------------------------
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGI--EPVIMSAGELESERAGEPGKLIRERYRTA------------------------ 108 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~--~~i~vs~~eL~s~~~GEser~IR~~F~~A------------------------ 108 (321)
.++|+||||||||+|+..++..... ..+++.+ -.||-.+.+++++++-
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~V~~------~iGerttev~el~~~l~~~~~l~~tvvv~~~~~d~pg~r~ 226 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHNIAQEHGGISVFA------GVGERTREGNDLYHEMKDSGVISKTAMVFGQMNEPPGARM 226 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHHHHHHTCCCEEEE------EESSCHHHHHHHHHHHHHTSGGGGEEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCccHHHHHHHhhhhhccCcEEEEe------eeccCchHHHHHHHHhhhcCCcceeEEEEEcCCCCHHHHH
Confidence 7899999999999999988776432 2333322 1456565555555411
Q ss_pred ---------Hhhhhh-cCCceEEEeecccc
Q 020787 109 ---------SQVVQN-QGKMSCLMINDIDA 128 (321)
Q Consensus 109 ---------~~~~~~-~gaPcILFIDEIDA 128 (321)
++..+. +|+-.+||+|+|-.
T Consensus 227 ~~~~~~ltiAEyFrd~~G~~VLl~~D~itR 256 (473)
T 1sky_E 227 RVALTGLTMAEYFRDEQGQDGLLFIDNIFR 256 (473)
T ss_dssp HHHHHHHHHHHHHHHHSCCEEEEEEECTHH
T ss_pred HHHHHHHHHHHHHHHhcCCcEEEEeccHHH
Confidence 122233 68999999999975
No 197
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=97.22 E-value=0.00016 Score=64.36 Aligned_cols=38 Identities=29% Similarity=0.359 Sum_probs=33.1
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCce--------EEeeccccccc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEP--------VIMSAGELESE 92 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~--------i~vs~~eL~s~ 92 (321)
+++|.||||||||++|+.+++.+|+++ +.++..++...
T Consensus 24 iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~~ 69 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRV 69 (252)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccccc
Confidence 689999999999999999999999873 47888888764
No 198
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.21 E-value=0.00042 Score=59.84 Aligned_cols=35 Identities=11% Similarity=0.164 Sum_probs=28.2
Q ss_pred HhccccCCCCcHHHHHHHHHHHcC----CceEEeecccc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMG----IEPVIMSAGEL 89 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g----~~~i~vs~~eL 89 (321)
++.|.||||||||+++++++..++ .+++.+++..+
T Consensus 27 ~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~ 65 (211)
T 1m7g_A 27 TIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 65 (211)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHH
Confidence 567899999999999999998764 55777775444
No 199
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=97.20 E-value=0.00014 Score=63.73 Aligned_cols=35 Identities=26% Similarity=0.478 Sum_probs=28.0
Q ss_pred hccccCCCCcHHHHHHHHHHHcCCceEEeeccccccc
Q 020787 56 LCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESE 92 (321)
Q Consensus 56 LgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~ 92 (321)
+.|.||||||||++|+.+++.+|+.+ ++.++++.+
T Consensus 3 I~l~G~~GsGKsT~a~~La~~lg~~~--i~~dd~~r~ 37 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQGNLVKDKYSLAH--IESGGIFRE 37 (223)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTCEE--EEHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeE--EchHHHHHH
Confidence 57899999999999999999998654 555555543
No 200
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.20 E-value=0.0001 Score=63.88 Aligned_cols=34 Identities=35% Similarity=0.443 Sum_probs=27.5
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeeccccc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELE 90 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~ 90 (321)
.+.|.||||||||++++.+|++++..+ ++.++++
T Consensus 7 ~I~l~G~~GsGKsT~~~~La~~l~~~~--i~~d~~~ 40 (222)
T 1zak_A 7 KVMISGAPASGKGTQCELIKTKYQLAH--ISAGDLL 40 (222)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHHCCEE--CCHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCce--ecHHHHH
Confidence 467899999999999999999999755 4444444
No 201
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.19 E-value=0.00028 Score=59.92 Aligned_cols=24 Identities=29% Similarity=0.409 Sum_probs=21.8
Q ss_pred HhccccCCCCcHHHHHHHHHHHcC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMG 78 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g 78 (321)
+++|.||+|||||+++++++....
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 578999999999999999998764
No 202
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.18 E-value=8.4e-05 Score=63.06 Aligned_cols=27 Identities=22% Similarity=0.243 Sum_probs=23.4
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCce
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEP 81 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~ 81 (321)
+++|.||||||||++++.++++++...
T Consensus 11 ~I~l~G~~GsGKsT~~~~L~~~l~~~~ 37 (215)
T 1nn5_A 11 LIVLEGVDRAGKSTQSRKLVEALCAAG 37 (215)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 578999999999999999999876443
No 203
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.14 E-value=0.00016 Score=60.76 Aligned_cols=33 Identities=27% Similarity=0.296 Sum_probs=27.1
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeeccccc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELE 90 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~ 90 (321)
+++|.||||||||++++.+|+. |+.++ +..++.
T Consensus 10 ~I~i~G~~GsGKST~~~~La~~-g~~~i--d~d~~~ 42 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVAALLRSW-GYPVL--DLDALA 42 (203)
T ss_dssp EEEEEECTTSCHHHHHHHHHHT-TCCEE--EHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHC-CCEEE--cccHHH
Confidence 6899999999999999999998 76665 444444
No 204
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=97.13 E-value=0.0016 Score=68.00 Aligned_cols=22 Identities=27% Similarity=0.332 Sum_probs=20.0
Q ss_pred HhccccCCCCcHHHHHHHHHHH
Q 020787 55 SLCIWGGKGQGKSFQTELIFQA 76 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e 76 (321)
+++|||++|+|||.||+.++.+
T Consensus 149 ~v~i~G~gG~GKTtLa~~~~~~ 170 (1249)
T 3sfz_A 149 WVTIYGMAGCGKSVLAAEAVRD 170 (1249)
T ss_dssp EEEEECSTTSSHHHHHHHHTCC
T ss_pred EEEEEeCCCCCHHHHHHHHhcC
Confidence 5789999999999999999876
No 205
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=97.10 E-value=0.00019 Score=62.87 Aligned_cols=29 Identities=28% Similarity=0.326 Sum_probs=26.3
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEE
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVI 83 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~ 83 (321)
++||.|++|||||++++.+++.+|+++|.
T Consensus 14 iIgltG~~GSGKSTva~~L~~~lg~~vid 42 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNKYGAHVVN 42 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCEEEE
Confidence 68999999999999999999998987665
No 206
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.09 E-value=0.0002 Score=64.31 Aligned_cols=34 Identities=15% Similarity=0.291 Sum_probs=29.4
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeeccccc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELE 90 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~ 90 (321)
+++|-||+|||||++++++|+++|..++ +.+++.
T Consensus 29 ~I~I~G~~GsGKSTl~k~La~~Lg~~~~--d~g~i~ 62 (252)
T 4e22_A 29 VITVDGPSGAGKGTLCKALAESLNWRLL--DSGAIY 62 (252)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTCEEE--EHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCCcC--CCCcee
Confidence 7899999999999999999999998665 555554
No 207
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=97.07 E-value=0.001 Score=49.95 Aligned_cols=54 Identities=19% Similarity=0.105 Sum_probs=43.5
Q ss_pred CCCHHHHHHHHHHHhhcCCCC-HHHHHHhhhCCCCCcchhhHHHHHhHhHHHHHHHHHh
Q 020787 202 QPNLEDILNIVHRMYEKDGIT-KDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDD 259 (321)
Q Consensus 202 ~Pd~~~R~~Il~~~~~~~~l~-~~dl~~L~d~f~gq~idf~gAlra~~~d~~~~~~i~~ 259 (321)
+||.++|.+||+.++++.+++ ..|+..|+..+ -+|+||....++.++....+.+
T Consensus 2 lPd~~~R~~Il~~~l~~~~~~~~~dl~~la~~t----~G~SGADi~~l~~eA~~~a~~~ 56 (78)
T 3kw6_A 2 PPNEEARLDILKIHSRKMNLTRGINLRKIAELM----PGASGAEVKGVCTEAGMYALRE 56 (78)
T ss_dssp CCCHHHHHHHHHHHHTTSEECTTCCHHHHHHTC----TTCCHHHHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHc----CCCCHHHHHHHHHHHHHHHHHh
Confidence 599999999999999988764 45777777644 3588898899999998877766
No 208
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=97.06 E-value=0.00025 Score=60.84 Aligned_cols=29 Identities=17% Similarity=0.171 Sum_probs=26.3
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEE
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVI 83 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~ 83 (321)
+++|.||||||||++++.+|+.+|++++.
T Consensus 5 ~i~i~G~~gsGkst~~~~l~~~~g~~~~~ 33 (219)
T 2h92_A 5 NIALDGPAAAGKSTIAKRVASELSMIYVD 33 (219)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceec
Confidence 57899999999999999999999987655
No 209
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=97.06 E-value=0.0011 Score=59.10 Aligned_cols=37 Identities=19% Similarity=0.265 Sum_probs=30.4
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeecc-cccc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAG-ELES 91 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~-eL~s 91 (321)
-.+|.||+|+|||+++.+++.+++...+.+... +|..
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~~~L~~ 147 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVPTLALAE 147 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHSCSCEEEEESSHHHHH
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCCHHHHH
Confidence 478899999999999999999998777777665 5543
No 210
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.05 E-value=8.7e-05 Score=62.98 Aligned_cols=29 Identities=24% Similarity=0.229 Sum_probs=24.9
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEE
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVI 83 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~ 83 (321)
+++|.||||||||+++++++++++...+.
T Consensus 12 ~I~l~G~~GsGKST~~~~L~~~l~~~~~~ 40 (212)
T 2wwf_A 12 FIVFEGLDRSGKSTQSKLLVEYLKNNNVE 40 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCc
Confidence 57899999999999999999988765443
No 211
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.04 E-value=0.00029 Score=59.40 Aligned_cols=34 Identities=18% Similarity=0.246 Sum_probs=27.1
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeeccccc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELE 90 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~ 90 (321)
+++|.||+|||||+++++++.... .+.+.+..+.
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~~~--~~~~~~~~~~ 42 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKALA--EIKISISHTT 42 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHSS--SEEECCCEEC
T ss_pred EEEEECcCCCCHHHHHHHHHhhCC--CeEEeceecc
Confidence 689999999999999999999863 4555554443
No 212
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.04 E-value=8.1e-05 Score=72.39 Aligned_cols=29 Identities=24% Similarity=0.267 Sum_probs=26.8
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEE
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVI 83 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~ 83 (321)
.++|+||||||||++++++|+.++.+|+.
T Consensus 26 ~i~l~G~~G~GKTTl~~~la~~l~~~f~~ 54 (359)
T 2ga8_A 26 CVILVGSPGSGKSTIAEELCQIINEKYHT 54 (359)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 47899999999999999999999999865
No 213
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=97.02 E-value=0.00025 Score=62.41 Aligned_cols=34 Identities=24% Similarity=0.383 Sum_probs=28.6
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeeccccc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELE 90 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~ 90 (321)
+++|.||||||||++++.+|+++|++++ +.+++.
T Consensus 18 ~i~i~G~~gsGKst~~~~l~~~lg~~~~--d~d~~~ 51 (236)
T 1q3t_A 18 QIAIDGPASSGKSTVAKIIAKDFGFTYL--DTGAMY 51 (236)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHHCCEEE--EHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcee--cCCCee
Confidence 6899999999999999999999997765 445444
No 214
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.01 E-value=0.00027 Score=64.34 Aligned_cols=34 Identities=24% Similarity=0.359 Sum_probs=28.6
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeeccccc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELE 90 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~ 90 (321)
++.|.||||||||++++++|+++|..+ ++.+++.
T Consensus 11 ~i~i~G~~GsGKsTla~~la~~lg~~~--~d~g~~~ 44 (233)
T 3r20_A 11 VVAVDGPAGTGKSSVSRGLARALGARY--LDTGAMY 44 (233)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCEE--EEHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCc--ccCCcHH
Confidence 678999999999999999999999765 4555554
No 215
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.99 E-value=0.00034 Score=62.31 Aligned_cols=24 Identities=21% Similarity=0.405 Sum_probs=22.1
Q ss_pred HhccccCCCCcHHHHHHHHHHHcC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMG 78 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g 78 (321)
++.|.||+|||||+|++++++...
T Consensus 21 ~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 21 TLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEEECcCCCCHHHHHHHHHhhCC
Confidence 678999999999999999998875
No 216
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.97 E-value=0.00017 Score=61.78 Aligned_cols=34 Identities=15% Similarity=0.173 Sum_probs=27.1
Q ss_pred HhccccCCCCcHHHHHHHHHHHc-CCceEEeeccccc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM-GIEPVIMSAGELE 90 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~-g~~~i~vs~~eL~ 90 (321)
+++|.||||||||++++++++.+ ++.++ +..++.
T Consensus 23 ~i~i~G~~GsGKSTl~~~L~~~~~~~~~i--~~D~~~ 57 (207)
T 2qt1_A 23 IIGISGVTNSGKTTLAKNLQKHLPNCSVI--SQDDFF 57 (207)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSTTEEEE--EGGGGB
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCcEEE--eCCccc
Confidence 78999999999999999999988 65544 444443
No 217
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.97 E-value=0.0015 Score=63.37 Aligned_cols=32 Identities=25% Similarity=0.080 Sum_probs=23.9
Q ss_pred HhccccCCCCcHHHHHHHHHHHc----CCceEEeec
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM----GIEPVIMSA 86 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~----g~~~i~vs~ 86 (321)
+..|.||||+|||.+|..+|... |.+.+.++.
T Consensus 202 l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl 237 (444)
T 2q6t_A 202 LNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL 237 (444)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 67899999999999998777543 545555443
No 218
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.95 E-value=0.00036 Score=58.70 Aligned_cols=34 Identities=18% Similarity=0.183 Sum_probs=26.0
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeecccc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGEL 89 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL 89 (321)
+++|.||||||||++++++++..+.. +.+++-++
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~~g~-~~i~~d~~ 37 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQLDNS-AYIEGDII 37 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSSE-EEEEHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhcccCCe-EEEcccch
Confidence 57899999999999999999866532 44555443
No 219
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.94 E-value=0.00032 Score=60.47 Aligned_cols=28 Identities=29% Similarity=0.450 Sum_probs=24.3
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEE
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVI 83 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~ 83 (321)
+++|.||+|||||++++.+++ +|.+++.
T Consensus 6 ~I~i~G~~GSGKST~~~~L~~-lg~~~id 33 (218)
T 1vht_A 6 IVALTGGIGSGKSTVANAFAD-LGINVID 33 (218)
T ss_dssp EEEEECCTTSCHHHHHHHHHH-TTCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHH-cCCEEEE
Confidence 578999999999999999998 8876554
No 220
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.94 E-value=0.00032 Score=64.07 Aligned_cols=41 Identities=20% Similarity=0.290 Sum_probs=32.3
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeeccccccccC-CCc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERA-GEP 97 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~~~-GEs 97 (321)
++.|.||||||||++++++|+.+|..++-. .++..... |.+
T Consensus 50 ~i~l~G~~GsGKSTl~~~La~~lg~~~~d~--d~~~~~~~~g~~ 91 (250)
T 3nwj_A 50 SMYLVGMMGSGKTTVGKIMARSLGYTFFDC--DTLIEQAMKGTS 91 (250)
T ss_dssp CEEEECSTTSCHHHHHHHHHHHHTCEEEEH--HHHHHHHSTTSC
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCcEEeC--cHHHHHHhcCcc
Confidence 789999999999999999999999887764 44444444 443
No 221
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.92 E-value=0.0014 Score=61.67 Aligned_cols=66 Identities=15% Similarity=0.248 Sum_probs=42.8
Q ss_pred HhccccCCCCcHHHHHHHHHHHc---CCceEEeeccccc---------------------cccCCCcHHHHHHHHHHHHh
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM---GIEPVIMSAGELE---------------------SERAGEPGKLIRERYRTASQ 110 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~---g~~~i~vs~~eL~---------------------s~~~GEser~IR~~F~~A~~ 110 (321)
+++|.||+|||||+++..+|..+ |-.+..+.+ +.. +..-|++.+.+.+....|.
T Consensus 106 vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~-D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~~a~- 183 (306)
T 1vma_A 106 VIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAA-DTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAHAL- 183 (306)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEE-CTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHHHHH-
T ss_pred EEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcc-ccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHHH-
Confidence 78999999999999999998765 434443332 221 1123456565555555553
Q ss_pred hhhhcCCceEEEeecc
Q 020787 111 VVQNQGKMSCLMINDI 126 (321)
Q Consensus 111 ~~~~~gaPcILFIDEI 126 (321)
...|.+|+||+-
T Consensus 184 ----~~~~dvvIiDtp 195 (306)
T 1vma_A 184 ----ARNKDVVIIDTA 195 (306)
T ss_dssp ----HTTCSEEEEEEC
T ss_pred ----hcCCCEEEEECC
Confidence 237899999964
No 222
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=96.92 E-value=0.0014 Score=61.75 Aligned_cols=24 Identities=25% Similarity=0.318 Sum_probs=21.4
Q ss_pred HhccccCCCCcHHHHHHHHHHHcC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMG 78 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g 78 (321)
+.+|.||+|||||++.+|++.-++
T Consensus 62 ~~~lvG~NGaGKStLl~aI~~l~~ 85 (415)
T 4aby_A 62 FCAFTGETGAGKSIIVDALGLLLG 85 (415)
T ss_dssp EEEEEESHHHHHHHHTHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHhC
Confidence 779999999999999999976665
No 223
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.91 E-value=0.00046 Score=66.78 Aligned_cols=33 Identities=21% Similarity=0.180 Sum_probs=27.6
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeecccc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGEL 89 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL 89 (321)
++.|.||||||||++|+++++++++.+ ++..++
T Consensus 260 lIil~G~pGSGKSTla~~L~~~~~~~~--i~~D~~ 292 (416)
T 3zvl_A 260 VVVAVGFPGAGKSTFIQEHLVSAGYVH--VNRDTL 292 (416)
T ss_dssp EEEEESCTTSSHHHHHHHHTGGGTCEE--CCGGGS
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCcEE--EccchH
Confidence 788999999999999999999998654 455444
No 224
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.90 E-value=0.00028 Score=60.20 Aligned_cols=29 Identities=21% Similarity=0.401 Sum_probs=25.2
Q ss_pred HhccccCCCCcHHHHHHHHHHHcC--CceEE
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMG--IEPVI 83 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g--~~~i~ 83 (321)
+++|.||+|||||+++++++..++ +.++.
T Consensus 8 ~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~ 38 (211)
T 3asz_A 8 VIGIAGGTASGKTTLAQALARTLGERVALLP 38 (211)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHGGGEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeEEEe
Confidence 689999999999999999999988 55443
No 225
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=96.89 E-value=0.00059 Score=53.08 Aligned_cols=55 Identities=20% Similarity=0.157 Sum_probs=42.9
Q ss_pred CCCHHHHHHHHHHHhhcCCCC-HHHHHHhhhCCCCCcchhhHHHHHhHhHHHHHHHHHhc
Q 020787 202 QPNLEDILNIVHRMYEKDGIT-KDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDI 260 (321)
Q Consensus 202 ~Pd~~~R~~Il~~~~~~~~l~-~~dl~~L~d~f~gq~idf~gAlra~~~d~~~~~~i~~~ 260 (321)
.||.++|.+||+.++++.+++ ..|+..|+..++ +|+||..+.+|.++....+.+.
T Consensus 10 ~Pd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~T~----G~SGADL~~l~~eAa~~alr~~ 65 (86)
T 2krk_A 10 HPNEEARLDILKIHSRKMNLTRGINLRKIAELMP----GASGAEVKGVCTEAGMYALRER 65 (86)
T ss_dssp CCCHHHHHHHHHHHTTTSEECTTCCCHHHHHTCS----SCCHHHHHHHHHHHHHHHHHTT
T ss_pred CcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcC----CCCHHHHHHHHHHHHHHHHHHc
Confidence 599999999999999987654 456666665443 4788888899999888777664
No 226
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.88 E-value=0.0011 Score=63.88 Aligned_cols=33 Identities=21% Similarity=0.195 Sum_probs=29.7
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeecc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAG 87 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~ 87 (321)
++.|.||+|+|||.|+..+|++++..+|....-
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~ 74 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAAHFPLEVINSDKM 74 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHTTSCEEEEECCSS
T ss_pred eEEEECCCCCCHHHHHHHHHHHCCCcEEccccc
Confidence 678999999999999999999999998886554
No 227
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.83 E-value=0.00055 Score=65.60 Aligned_cols=66 Identities=17% Similarity=0.308 Sum_probs=41.2
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCC----ceEEeeccccc-----------cccCCCcHHHHHHHHHHHHhhhhhcCCce
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGI----EPVIMSAGELE-----------SERAGEPGKLIRERYRTASQVVQNQGKMS 119 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~----~~i~vs~~eL~-----------s~~~GEser~IR~~F~~A~~~~~~~gaPc 119 (321)
+++|.||+|||||++.++++..... .++.+.. .+. +..+|.....++...+.|. +..|.
T Consensus 138 ~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~-~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L-----~~~pd 211 (372)
T 2ewv_A 138 LILVTGPTGSGKSTTIASMIDYINQTKSYHIITIED-PIEYVFKHKKSIVNQREVGEDTKSFADALRAAL-----REDPD 211 (372)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEES-SCCSCCCCSSSEEEEEEBTTTBSCSHHHHHHHT-----TSCCS
T ss_pred EEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecc-cHhhhhccCceEEEeeecCCCHHHHHHHHHHHh-----hhCcC
Confidence 7899999999999999999986532 3333321 111 1112222233444454444 23799
Q ss_pred EEEeecc
Q 020787 120 CLMINDI 126 (321)
Q Consensus 120 ILFIDEI 126 (321)
+|++||+
T Consensus 212 ~illdE~ 218 (372)
T 2ewv_A 212 VIFVGEM 218 (372)
T ss_dssp EEEESCC
T ss_pred EEEECCC
Confidence 9999998
No 228
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.81 E-value=0.00033 Score=59.00 Aligned_cols=23 Identities=26% Similarity=0.374 Sum_probs=21.5
Q ss_pred HhccccCCCCcHHHHHHHHHHHc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM 77 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~ 77 (321)
+++|.||||||||+++++++...
T Consensus 8 ~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp EEEEECSTTSCHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhh
Confidence 67899999999999999999887
No 229
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.81 E-value=0.00028 Score=60.94 Aligned_cols=24 Identities=25% Similarity=0.379 Sum_probs=22.6
Q ss_pred HhccccCCCCcHHHHHHHHHHHcC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMG 78 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g 78 (321)
+++|.||+|||||+++++++..+.
T Consensus 24 ~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 24 LVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp EEEEECCTTSCTHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 789999999999999999999885
No 230
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=96.70 E-value=0.00058 Score=61.40 Aligned_cols=38 Identities=18% Similarity=0.229 Sum_probs=29.8
Q ss_pred hhhh----HhccccCCCCcHHHHHHHHHHHcCCceEEeecccccc
Q 020787 51 VFMA----SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELES 91 (321)
Q Consensus 51 ~f~~----iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s 91 (321)
+||. ++.|.|++|||||++++.+|+++|++++- ++++.
T Consensus 8 ~~m~~~~~iI~i~g~~gsGk~~i~~~la~~lg~~~~d---~~~~~ 49 (223)
T 3hdt_A 8 RFMGNKNLIITIEREYGSGGRIVGKKLAEELGIHFYD---DDILK 49 (223)
T ss_dssp ----CCCEEEEEEECTTSCHHHHHHHHHHHHTCEEEC---HHHHH
T ss_pred cccCCCCeEEEEeCCCCCCHHHHHHHHHHHcCCcEEc---HHHHH
Confidence 5665 89999999999999999999999999854 55543
No 231
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.70 E-value=0.00059 Score=62.49 Aligned_cols=29 Identities=24% Similarity=0.194 Sum_probs=25.4
Q ss_pred hHhccccCCCCcHHHHHHHHHHHcCCceEE
Q 020787 54 ASLCIWGGKGQGKSFQTELIFQAMGIEPVI 83 (321)
Q Consensus 54 ~iLgL~GPPGcGKTllaravA~e~g~~~i~ 83 (321)
.+++|.||||||||++|+.++ ++|+++|.
T Consensus 76 ~iI~I~G~~GSGKSTva~~La-~lg~~~id 104 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLK-NLGAYIID 104 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHH-HHTCEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHH-HCCCcEEe
Confidence 389999999999999999999 68876654
No 232
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.69 E-value=0.0027 Score=58.98 Aligned_cols=31 Identities=16% Similarity=-0.065 Sum_probs=23.4
Q ss_pred HhccccCCCCcHHHHHHHHHHHc---CCceEEee
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM---GIEPVIMS 85 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~---g~~~i~vs 85 (321)
..+|.|+||+|||.+|..+|... |.+.+.++
T Consensus 70 l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~s 103 (315)
T 3bh0_A 70 FVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS 103 (315)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 67889999999999998888654 33444444
No 233
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=96.66 E-value=0.0007 Score=59.28 Aligned_cols=36 Identities=22% Similarity=0.172 Sum_probs=30.8
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeecccccccc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESER 93 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~s~~ 93 (321)
++.|.||+|||||++++++|+++|++|+ + ++++...
T Consensus 8 iI~i~g~~GsGk~ti~~~la~~lg~~~~--D-~~~~~~~ 43 (201)
T 3fdi_A 8 IIAIGREFGSGGHLVAKKLAEHYNIPLY--S-KELLDEV 43 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTCCEE--C-HHHHHHT
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhCcCEE--C-HHHHHHH
Confidence 6789999999999999999999999988 3 6665433
No 234
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.66 E-value=0.00093 Score=63.03 Aligned_cols=69 Identities=10% Similarity=0.142 Sum_probs=45.8
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCC--ceEEeecccccc-----c---cCCCcHHHHHHHHHHHHhhhhhcCCceEEEee
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGI--EPVIMSAGELES-----E---RAGEPGKLIRERYRTASQVVQNQGKMSCLMIN 124 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~--~~i~vs~~eL~s-----~---~~GEser~IR~~F~~A~~~~~~~gaPcILFID 124 (321)
+++|.||+|||||++.++++..... -.|.+.+..... . ++..+....|...+.|. ...|.+|++|
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL-----~~~p~ilild 247 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCL-----RMRPDRIILG 247 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHT-----TSCCSEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHh-----hhCCCEEEEc
Confidence 8899999999999999999988653 356665542211 1 11002233445555554 3489999999
Q ss_pred cccc
Q 020787 125 DIDA 128 (321)
Q Consensus 125 EIDA 128 (321)
|.-+
T Consensus 248 E~~~ 251 (330)
T 2pt7_A 248 ELRS 251 (330)
T ss_dssp CCCS
T ss_pred CCCh
Confidence 9765
No 235
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.64 E-value=0.001 Score=57.20 Aligned_cols=33 Identities=24% Similarity=0.268 Sum_probs=26.8
Q ss_pred hHhccccCCCCcHHHHHHHHHHHc---CCceEEeec
Q 020787 54 ASLCIWGGKGQGKSFQTELIFQAM---GIEPVIMSA 86 (321)
Q Consensus 54 ~iLgL~GPPGcGKTllaravA~e~---g~~~i~vs~ 86 (321)
.+++|.||+|||||+++++++..+ +..++..+.
T Consensus 23 ~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~ 58 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHM 58 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEG
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEecc
Confidence 378999999999999999999875 655555543
No 236
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.63 E-value=0.0027 Score=56.90 Aligned_cols=73 Identities=10% Similarity=0.175 Sum_probs=51.3
Q ss_pred HhccccCCCCcHHHHHHHHHHH---cCCceEEe---ecc------cccccc-----------CCC------cHHHHHHHH
Q 020787 55 SLCIWGGKGQGKSFQTELIFQA---MGIEPVIM---SAG------ELESER-----------AGE------PGKLIRERY 105 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e---~g~~~i~v---s~~------eL~s~~-----------~GE------ser~IR~~F 105 (321)
.+.+|+++|.|||+.|-++|-. .|.....+ +++ +++... .-+ -+...+..+
T Consensus 30 ~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~~l 109 (196)
T 1g5t_A 30 IIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMAVW 109 (196)
T ss_dssp CEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHHHH
Confidence 6789999999999999666543 35555555 442 344443 111 246778899
Q ss_pred HHHHhhhhhcCCceEEEeecccc
Q 020787 106 RTASQVVQNQGKMSCLMINDIDA 128 (321)
Q Consensus 106 ~~A~~~~~~~gaPcILFIDEIDA 128 (321)
..|++... .+...+|++|||=-
T Consensus 110 ~~a~~~l~-~~~yDlvILDEi~~ 131 (196)
T 1g5t_A 110 QHGKRMLA-DPLLDMVVLDELTY 131 (196)
T ss_dssp HHHHHHTT-CTTCSEEEEETHHH
T ss_pred HHHHHHHh-cCCCCEEEEeCCCc
Confidence 99988864 57899999999955
No 237
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.60 E-value=0.0007 Score=60.98 Aligned_cols=28 Identities=21% Similarity=0.234 Sum_probs=23.4
Q ss_pred HhccccCCCCcHHHHHHHHHHHc-CCceE
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM-GIEPV 82 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~-g~~~i 82 (321)
++.|.||||||||+++++++++. |+.++
T Consensus 4 ~I~l~G~~GsGKST~a~~L~~~~~~~~~i 32 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFIAKNPGFYNI 32 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHSTTEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhCCCcEEe
Confidence 46789999999999999999974 65544
No 238
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.58 E-value=0.00072 Score=58.28 Aligned_cols=24 Identities=17% Similarity=0.185 Sum_probs=22.5
Q ss_pred HhccccCCCCcHHHHHHHHHHHcC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMG 78 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g 78 (321)
+++|.||+|||||+++++++....
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHST
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 889999999999999999999874
No 239
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.57 E-value=0.0028 Score=62.22 Aligned_cols=32 Identities=13% Similarity=-0.020 Sum_probs=24.7
Q ss_pred HhccccCCCCcHHHHHHHHHHHc----CCceEEeec
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM----GIEPVIMSA 86 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~----g~~~i~vs~ 86 (321)
+.+|.||||+|||.+|-.+|..+ |.+.+.++.
T Consensus 244 l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~ 279 (503)
T 1q57_A 244 VIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAML 279 (503)
T ss_dssp EEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEES
T ss_pred EEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEec
Confidence 66899999999999998887765 445555554
No 240
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.55 E-value=0.00081 Score=57.69 Aligned_cols=24 Identities=21% Similarity=0.375 Sum_probs=22.1
Q ss_pred HhccccCCCCcHHHHHHHHHHHcC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMG 78 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g 78 (321)
++.|.||||+|||+++++++..++
T Consensus 14 ~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 14 PLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhCc
Confidence 568899999999999999999985
No 241
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.52 E-value=0.00084 Score=56.76 Aligned_cols=24 Identities=17% Similarity=0.386 Sum_probs=21.8
Q ss_pred HhccccCCCCcHHHHHHHHHHHcC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMG 78 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g 78 (321)
+++|.||+|||||++++++++...
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 578999999999999999999764
No 242
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=96.45 E-value=0.0025 Score=63.84 Aligned_cols=36 Identities=14% Similarity=0.334 Sum_probs=28.4
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCC---ceEEeeccccc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGI---EPVIMSAGELE 90 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~---~~i~vs~~eL~ 90 (321)
++.|.|+||+|||++|+.+|+.++. ....++..++.
T Consensus 37 lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r 75 (520)
T 2axn_A 37 VIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYR 75 (520)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHH
Confidence 6788999999999999999999854 44456665543
No 243
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.45 E-value=0.00097 Score=59.06 Aligned_cols=26 Identities=31% Similarity=0.466 Sum_probs=24.1
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIE 80 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~ 80 (321)
++||.||+|||||+++++++..+|..
T Consensus 27 iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 27 LIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhchh
Confidence 79999999999999999999998754
No 244
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=96.44 E-value=0.0051 Score=66.12 Aligned_cols=20 Identities=25% Similarity=0.165 Sum_probs=19.1
Q ss_pred HhccccCCCCcHHHHHHHHH
Q 020787 55 SLCIWGGKGQGKSFQTELIF 74 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA 74 (321)
+++|.||+|+|||++.|.++
T Consensus 675 i~~ItGPNGaGKSTlLr~i~ 694 (918)
T 3thx_B 675 VMIITGPNMGGKSSYIKQVA 694 (918)
T ss_dssp EEEEESCCCHHHHHHHHHHH
T ss_pred EEEEECCCCCchHHHHHHHH
Confidence 89999999999999999987
No 245
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.43 E-value=0.0017 Score=62.19 Aligned_cols=47 Identities=9% Similarity=0.011 Sum_probs=30.3
Q ss_pred hhhhhhccCccccchhhhhHhccccCCCCcHHHHHHHHHHH---cCCceEEeec
Q 020787 36 TRSFEYLQGDYYIAPVFMASLCIWGGKGQGKSFQTELIFQA---MGIEPVIMSA 86 (321)
Q Consensus 36 ~~~~~~~~~~~~~~p~f~~iLgL~GPPGcGKTllaravA~e---~g~~~i~vs~ 86 (321)
+..++.+.+|+.-- +..+|.|+||+|||.+|..+|.. .|.+.+.+|.
T Consensus 33 ~~~LD~~~gGl~~G----~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSl 82 (338)
T 4a1f_A 33 FVQLDNYTSGFNKG----SLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSL 82 (338)
T ss_dssp CHHHHHHHCSBCTT----CEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred ChHHHHHhcCCCCC----cEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 33445555543211 36789999999999999888765 3555544443
No 246
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.42 E-value=0.0089 Score=59.24 Aligned_cols=34 Identities=21% Similarity=0.193 Sum_probs=24.2
Q ss_pred HhccccCCCCcHHHHHHH--HHHHc--CCceEEeeccc
Q 020787 55 SLCIWGGKGQGKSFQTEL--IFQAM--GIEPVIMSAGE 88 (321)
Q Consensus 55 iLgL~GPPGcGKTllara--vA~e~--g~~~i~vs~~e 88 (321)
+++|.||||||||+|+++ ++... +-.-+.+++.+
T Consensus 41 ~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~ 78 (525)
T 1tf7_A 41 STLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEE 78 (525)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeC
Confidence 789999999999999999 34332 34455555533
No 247
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.39 E-value=0.0012 Score=63.57 Aligned_cols=32 Identities=16% Similarity=0.101 Sum_probs=28.4
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeec
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSA 86 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~ 86 (321)
+++|.||+|+|||++|+.+|.++++.+|.+..
T Consensus 9 lI~I~GptgSGKTtla~~La~~l~~~iis~Ds 40 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKKFNGEIISGDS 40 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTEEEEECCS
T ss_pred eEEEECCCcCcHHHHHHHHHHHcCCceecccc
Confidence 67899999999999999999999987776654
No 248
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.38 E-value=0.001 Score=61.64 Aligned_cols=25 Identities=20% Similarity=0.244 Sum_probs=23.2
Q ss_pred hHhccccCCCCcHHHHHHHHHHHcC
Q 020787 54 ASLCIWGGKGQGKSFQTELIFQAMG 78 (321)
Q Consensus 54 ~iLgL~GPPGcGKTllaravA~e~g 78 (321)
.++||.||+|||||+++++++..++
T Consensus 81 ~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3899999999999999999999876
No 249
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.32 E-value=0.0074 Score=59.96 Aligned_cols=73 Identities=15% Similarity=0.177 Sum_probs=44.9
Q ss_pred HhccccCCCCcHHHHHHHHHHHc-----CCceEEeecc---------------ccccccCCCcH-HHHHH---HHHHHHh
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM-----GIEPVIMSAG---------------ELESERAGEPG-KLIRE---RYRTASQ 110 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~-----g~~~i~vs~~---------------eL~s~~~GEse-r~IR~---~F~~A~~ 110 (321)
.++|.||||||||.|++.+|+.. ++..|.+--+ .++..-.-+|. ..++- ....|.
T Consensus 176 r~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~I~~lIGER~~Ev~~~~~~~~~~vV~atadep~~~r~~~a~~alt~AE- 254 (422)
T 3ice_A 176 RGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAK- 254 (422)
T ss_dssp EEEEECCSSSSHHHHHHHHHHHHHHHCTTSEEEEEEESSCHHHHHHHHTTCSSEEEEECTTSCHHHHHHHHHHHHHHHH-
T ss_pred EEEEecCCCCChhHHHHHHHHHHhhcCCCeeEEEEEecCChHHHHHHHHHhCeEEEEeCCCCCHHHHHHHHHHHHHHHH-
Confidence 78999999999999999998754 4544443222 12222233333 22221 112232
Q ss_pred hhhhcCCceEEEeecccc
Q 020787 111 VVQNQGKMSCLMINDIDA 128 (321)
Q Consensus 111 ~~~~~gaPcILFIDEIDA 128 (321)
..+.+|+..+||+|+|-.
T Consensus 255 yfrd~G~dVLil~DslTR 272 (422)
T 3ice_A 255 RLVEHKKDVIILLDSITR 272 (422)
T ss_dssp HHHHTSCEEEEEEECHHH
T ss_pred HHHhcCCCEEEEEeCchH
Confidence 223478999999999986
No 250
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=96.29 E-value=0.0076 Score=59.74 Aligned_cols=21 Identities=29% Similarity=0.401 Sum_probs=20.0
Q ss_pred HhccccCCCCcHHHHHHHHHH
Q 020787 55 SLCIWGGKGQGKSFQTELIFQ 75 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~ 75 (321)
+++|||++|+|||.||+.+++
T Consensus 154 vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 154 FLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 678999999999999999997
No 251
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=96.28 E-value=0.0042 Score=64.32 Aligned_cols=33 Identities=18% Similarity=0.270 Sum_probs=29.6
Q ss_pred HhccccCCCCcHHHHHHHHHHHc---CCceEEeecc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM---GIEPVIMSAG 87 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~---g~~~i~vs~~ 87 (321)
++.|.|+||+|||++++++++.+ |.+++.+++-
T Consensus 54 lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD 89 (630)
T 1x6v_B 54 TVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGD 89 (630)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechH
Confidence 47889999999999999999999 9999988753
No 252
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.27 E-value=0.01 Score=58.25 Aligned_cols=32 Identities=16% Similarity=-0.075 Sum_probs=24.3
Q ss_pred HhccccCCCCcHHHHHHHHHHHc---CCceEEeec
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM---GIEPVIMSA 86 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~---g~~~i~vs~ 86 (321)
...|.|+||+|||.+|-.+|... |.+.+.+|.
T Consensus 199 liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSl 233 (444)
T 3bgw_A 199 FVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 233 (444)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECS
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEEC
Confidence 67899999999999997776554 555555543
No 253
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=96.26 E-value=0.00052 Score=52.05 Aligned_cols=53 Identities=11% Similarity=0.002 Sum_probs=40.9
Q ss_pred CHHHHHHHHHHHhhcCCCC-HHHHHHhhhCCCCCcchhhHHHHHhHhHHHHHHHHHhc
Q 020787 204 NLEDILNIVHRMYEKDGIT-KDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDI 260 (321)
Q Consensus 204 d~~~R~~Il~~~~~~~~l~-~~dl~~L~d~f~gq~idf~gAlra~~~d~~~~~~i~~~ 260 (321)
|.++|.+||+.++++.+++ ..|+..|+..+. +|+||..+.++.++....+.+.
T Consensus 2 d~~~R~~Il~~~l~~~~~~~~vdl~~la~~t~----G~SGADi~~l~~eA~~~a~~~~ 55 (83)
T 3aji_B 2 DRRQKRLIFSTITSKMNLSEEVDLEDYVARPD----KISGADINSICQESGMLAVREN 55 (83)
T ss_dssp CHHHHHHHHHHHHTTSCBCTTCCTHHHHTSSC----CCCHHHHHHHHHHHHHGGGTSC
T ss_pred CHHHHHHHHHHHhCCCCCCcccCHHHHHHHcC----CCCHHHHHHHHHHHHHHHHHhc
Confidence 5789999999999988764 467777776444 5888999999998876665543
No 254
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.25 E-value=0.00065 Score=57.61 Aligned_cols=25 Identities=28% Similarity=0.263 Sum_probs=22.2
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGI 79 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~ 79 (321)
++.|.||||||||++++.+++.++.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 3578999999999999999999864
No 255
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=96.24 E-value=0.0074 Score=46.67 Aligned_cols=53 Identities=17% Similarity=0.018 Sum_probs=41.6
Q ss_pred CHHHHHHHHHHHhhcCCCC-HHHHHHhhhCCCCCcchhhHHHHHhHhHHHHHHHHHhc
Q 020787 204 NLEDILNIVHRMYEKDGIT-KDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDI 260 (321)
Q Consensus 204 d~~~R~~Il~~~~~~~~l~-~~dl~~L~d~f~gq~idf~gAlra~~~d~~~~~~i~~~ 260 (321)
|.++|.+||+.++++.+++ ..|+..|+..++ +|+||..+.+|.++....+.+.
T Consensus 2 d~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~----G~SGADl~~l~~eAa~~a~r~~ 55 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMSVERGIRWELISRLCP----NSTGAELRSVCTEAGMFAIRAR 55 (88)
T ss_dssp CSSHHHHHHHHHHTTSCBCSCCCHHHHHHTCS----SCCHHHHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHCCCCCCCccCHHHHHHHcC----CCcHHHHHHHHHHHHHHHHHhc
Confidence 5679999999999988765 467777776443 5788988999999888777764
No 256
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.22 E-value=0.0016 Score=57.19 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=21.8
Q ss_pred HhccccCCCCcHHHHHHHHHHHc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM 77 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~ 77 (321)
+++|.||+|||||+++++++...
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 78999999999999999999977
No 257
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.21 E-value=0.0012 Score=61.17 Aligned_cols=36 Identities=17% Similarity=0.275 Sum_probs=27.0
Q ss_pred HhccccCCCCcHHHHHHHHHHHcC---CceEEeeccccc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMG---IEPVIMSAGELE 90 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g---~~~i~vs~~eL~ 90 (321)
+++|.||+|||||++|+.+++.+| .++..++..++.
T Consensus 7 iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~ 45 (290)
T 1a7j_A 7 IISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH 45 (290)
T ss_dssp EEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhh
Confidence 589999999999999999999876 456667766665
No 258
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.20 E-value=0.0021 Score=61.58 Aligned_cols=36 Identities=11% Similarity=0.200 Sum_probs=30.8
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeeccccc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELE 90 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~ 90 (321)
++.|.||+|+|||.++..+|++++..+|++.+-.+.
T Consensus 12 ~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~qvY 47 (316)
T 3foz_A 12 AIFLMGPTASGKTALAIELRKILPVELISVDSALIY 47 (316)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHSCEEEEECCTTTTB
T ss_pred EEEEECCCccCHHHHHHHHHHhCCCcEEeccccccc
Confidence 567899999999999999999999988887664443
No 259
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.18 E-value=0.0032 Score=56.05 Aligned_cols=29 Identities=14% Similarity=0.312 Sum_probs=24.3
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCC--ceEE
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGI--EPVI 83 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~--~~i~ 83 (321)
.+.|.||||||||++++.+++.++. .++.
T Consensus 28 ~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~ 58 (229)
T 4eaq_A 28 FITFEGPEGSGKTTVINEVYHRLVKDYDVIM 58 (229)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTTTSCEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHhcCCCcee
Confidence 4678999999999999999999973 4443
No 260
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.17 E-value=0.0018 Score=55.13 Aligned_cols=23 Identities=26% Similarity=0.382 Sum_probs=22.1
Q ss_pred HhccccCCCCcHHHHHHHHHHHc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM 77 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~ 77 (321)
+++|.||.|||||+++++++..+
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 78999999999999999999987
No 261
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.13 E-value=0.0052 Score=53.94 Aligned_cols=25 Identities=28% Similarity=0.340 Sum_probs=21.3
Q ss_pred hccccCCCCcHHHHHHHHHHHcCCc
Q 020787 56 LCIWGGKGQGKSFQTELIFQAMGIE 80 (321)
Q Consensus 56 LgL~GPPGcGKTllaravA~e~g~~ 80 (321)
+.|.||+|+|||+|++.+.++..-.
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~~ 28 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPDS 28 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTT
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCC
Confidence 4689999999999999999887543
No 262
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=96.13 E-value=0.013 Score=58.96 Aligned_cols=24 Identities=29% Similarity=0.419 Sum_probs=22.1
Q ss_pred HhccccCCCCcHHHHHHHHHHHcC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMG 78 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g 78 (321)
+++|.||+|||||+++++++....
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~~~ 394 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRFYD 394 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTTTC
T ss_pred EEEEECCCCCCHHHHHHHHhhccC
Confidence 899999999999999999998764
No 263
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.12 E-value=0.0018 Score=61.60 Aligned_cols=24 Identities=21% Similarity=0.259 Sum_probs=22.6
Q ss_pred HhccccCCCCcHHHHHHHHHHHcC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMG 78 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g 78 (321)
++||-||+|||||+++++++..++
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 789999999999999999999876
No 264
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.11 E-value=0.0034 Score=55.09 Aligned_cols=20 Identities=30% Similarity=0.421 Sum_probs=16.8
Q ss_pred HhccccCCCCcHHHHHHHHH
Q 020787 55 SLCIWGGKGQGKSFQTELIF 74 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA 74 (321)
.+++.||+|||||++..+..
T Consensus 78 ~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 78 VVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCcHHhHHHHH
Confidence 68999999999998766554
No 265
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.09 E-value=0.0024 Score=65.48 Aligned_cols=23 Identities=26% Similarity=0.329 Sum_probs=21.6
Q ss_pred HhccccCCCCcHHHHHHHHHHHc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM 77 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~ 77 (321)
+++|-||+|||||+|.++++...
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 89999999999999999999765
No 266
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.08 E-value=0.0045 Score=58.82 Aligned_cols=69 Identities=14% Similarity=0.183 Sum_probs=43.9
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCC--ceEEeecc-ccccc-------cC-------CC-cHHHHHHHHHHHHhhhhhcC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGI--EPVIMSAG-ELESE-------RA-------GE-PGKLIRERYRTASQVVQNQG 116 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~--~~i~vs~~-eL~s~-------~~-------GE-ser~IR~~F~~A~~~~~~~g 116 (321)
+++|.||+|||||+++++++..... -.|.+.+. |+.-. ++ |. ..-.+++..+.|.. .
T Consensus 177 ~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~-----~ 251 (361)
T 2gza_A 177 VIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLR-----M 251 (361)
T ss_dssp CEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCCTTCSSEEEEECC----------CCHHHHHHHHTT-----S
T ss_pred EEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCccccCCEEEEeecCccccccccccCHHHHHHHHHh-----c
Confidence 8899999999999999999987753 34555432 22110 11 11 22235566666643 3
Q ss_pred CceEEEeecccc
Q 020787 117 KMSCLMINDIDA 128 (321)
Q Consensus 117 aPcILFIDEIDA 128 (321)
.|.+++++|+-.
T Consensus 252 ~pd~~l~~e~r~ 263 (361)
T 2gza_A 252 KPTRILLAELRG 263 (361)
T ss_dssp CCSEEEESCCCS
T ss_pred CCCEEEEcCchH
Confidence 799999998753
No 267
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.07 E-value=0.0012 Score=57.66 Aligned_cols=23 Identities=17% Similarity=0.241 Sum_probs=15.3
Q ss_pred HhccccCCCCcHHHHHHHHH-HHc
Q 020787 55 SLCIWGGKGQGKSFQTELIF-QAM 77 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA-~e~ 77 (321)
+++|.||+|||||+++++++ ...
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp EEEEECSCC----CHHHHHHC---
T ss_pred EEEEECCCCCCHHHHHHHHHhcCC
Confidence 78999999999999999999 765
No 268
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.07 E-value=0.0099 Score=59.07 Aligned_cols=67 Identities=13% Similarity=0.200 Sum_probs=45.5
Q ss_pred HhccccCCCCcHHHHHHHHHHHc---CCceEEeeccc-------------------cccc-cCCCcHHHHHHHHHHHHhh
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM---GIEPVIMSAGE-------------------LESE-RAGEPGKLIRERYRTASQV 111 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~---g~~~i~vs~~e-------------------L~s~-~~GEser~IR~~F~~A~~~ 111 (321)
++++.||||+|||+++..+|..+ |..+..+++.- ++.. ...++...+++..+.|...
T Consensus 102 vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a~~~ 181 (443)
T 3dm5_A 102 ILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYFKSK 181 (443)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHHHHT
T ss_pred EEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHHHhC
Confidence 78899999999999998888644 66666655321 1221 2235666777777777642
Q ss_pred hhhcCCceEEEeecc
Q 020787 112 VQNQGKMSCLMINDI 126 (321)
Q Consensus 112 ~~~~gaPcILFIDEI 126 (321)
.+.+++||..
T Consensus 182 -----~~DvVIIDTa 191 (443)
T 3dm5_A 182 -----GVDIIIVDTA 191 (443)
T ss_dssp -----TCSEEEEECC
T ss_pred -----CCCEEEEECC
Confidence 5788998853
No 269
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.04 E-value=0.0029 Score=63.50 Aligned_cols=68 Identities=15% Similarity=0.187 Sum_probs=45.0
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCC--ceEEeeccc-cccc---c--------CCCcHHHHHHHHHHHHhhhhhcCCceE
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGI--EPVIMSAGE-LESE---R--------AGEPGKLIRERYRTASQVVQNQGKMSC 120 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~--~~i~vs~~e-L~s~---~--------~GEser~IR~~F~~A~~~~~~~gaPcI 120 (321)
+++|.||+|||||++.++++....- ..+.+.+.. +.-. | .+..+-.+++..+.+..+ .|.+
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~~~LR~-----~PD~ 336 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLRAALRQ-----RPDY 336 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHHTTGGG-----CCSE
T ss_pred EEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHHHhhcc-----CCCe
Confidence 7899999999999999999988753 456665543 3210 0 122222344454444433 7999
Q ss_pred EEeeccc
Q 020787 121 LMINDID 127 (321)
Q Consensus 121 LFIDEID 127 (321)
|++.|+=
T Consensus 337 iivgEir 343 (511)
T 2oap_1 337 IIVGEVR 343 (511)
T ss_dssp EEESCCC
T ss_pred EEeCCcC
Confidence 9999984
No 270
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.04 E-value=0.0041 Score=56.96 Aligned_cols=32 Identities=16% Similarity=0.218 Sum_probs=23.5
Q ss_pred HhccccCCCCcHHHHHHHHHHH---cCCceEEeec
Q 020787 55 SLCIWGGKGQGKSFQTELIFQA---MGIEPVIMSA 86 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e---~g~~~i~vs~ 86 (321)
.+.+.|+||||||+++-.+|.. .|...+.+..
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~ 42 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVV 42 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEe
Confidence 3678999999999998777755 3666554444
No 271
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=96.01 E-value=0.0073 Score=60.71 Aligned_cols=25 Identities=28% Similarity=0.347 Sum_probs=22.5
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGI 79 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~ 79 (321)
+++|.||+|||||+++++++.....
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g~~~p 393 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPRFYDV 393 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTTSSCC
T ss_pred EEEEECCCCChHHHHHHHHhcCCCC
Confidence 8999999999999999999987643
No 272
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.01 E-value=0.0026 Score=61.07 Aligned_cols=33 Identities=15% Similarity=0.142 Sum_probs=28.7
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeecc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAG 87 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~ 87 (321)
++.|.||+|+|||.++..+|++++..+|+..+-
T Consensus 5 ~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~ 37 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSM 37 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHTTTEEEEECCGG
T ss_pred EEEEECCCcCCHHHHHHHHHHhCccceeecCcc
Confidence 467899999999999999999999888776654
No 273
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=96.01 E-value=0.01 Score=62.67 Aligned_cols=22 Identities=27% Similarity=0.068 Sum_probs=20.3
Q ss_pred HhccccCCCCcHHHHHHHHHHH
Q 020787 55 SLCIWGGKGQGKSFQTELIFQA 76 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e 76 (321)
+++|.||+|+|||++.|+++.-
T Consensus 609 i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 609 MLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCChHHHHHHHHHH
Confidence 8999999999999999999853
No 274
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.99 E-value=0.016 Score=50.82 Aligned_cols=31 Identities=16% Similarity=-0.011 Sum_probs=24.2
Q ss_pred HhccccCCCCcHHHHHHHHHHHc---CCceEEee
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM---GIEPVIMS 85 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~---g~~~i~vs 85 (321)
+..++||+|+|||+.+--+|..+ |...+.+.
T Consensus 10 i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k 43 (191)
T 1xx6_A 10 VEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFK 43 (191)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 66889999999998887777665 66666664
No 275
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=95.97 E-value=0.0023 Score=60.22 Aligned_cols=35 Identities=20% Similarity=0.344 Sum_probs=28.8
Q ss_pred ccchhhh----hHhccccCCCCcHHHHHHHHHHHcCCce
Q 020787 47 YIAPVFM----ASLCIWGGKGQGKSFQTELIFQAMGIEP 81 (321)
Q Consensus 47 ~~~p~f~----~iLgL~GPPGcGKTllaravA~e~g~~~ 81 (321)
+||+.+- ..++|.||+|||||+|+++++......-
T Consensus 160 ~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~ 198 (365)
T 1lw7_A 160 FIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTS 198 (365)
T ss_dssp GSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEE
T ss_pred hCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCc
Confidence 5666544 4899999999999999999999987653
No 276
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=95.94 E-value=0.0043 Score=63.02 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=18.9
Q ss_pred HhccccCCCCcHHHHHHHHHHHc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM 77 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~ 77 (321)
.+.|.||||||||+++..+...+
T Consensus 166 ~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 166 ISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp EEEEECCTTSTHHHHHHHHHHHH
T ss_pred CEEEEeCCCCCHHHHHHHHHHHH
Confidence 67899999999999887766543
No 277
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=95.91 E-value=0.016 Score=62.44 Aligned_cols=20 Identities=25% Similarity=-0.056 Sum_probs=18.9
Q ss_pred HhccccCCCCcHHHHHHHHH
Q 020787 55 SLCIWGGKGQGKSFQTELIF 74 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA 74 (321)
+++|.||+|+|||++.|.+|
T Consensus 664 i~~ItGpNGsGKSTlLr~ia 683 (934)
T 3thx_A 664 FHIITGPNMGGKSTYIRQTG 683 (934)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 79999999999999999984
No 278
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.91 E-value=0.012 Score=54.75 Aligned_cols=33 Identities=18% Similarity=0.247 Sum_probs=25.1
Q ss_pred hHhccccCCCCcHHHHHHHHHHHc---CCceEEeec
Q 020787 54 ASLCIWGGKGQGKSFQTELIFQAM---GIEPVIMSA 86 (321)
Q Consensus 54 ~iLgL~GPPGcGKTllaravA~e~---g~~~i~vs~ 86 (321)
.++++.||+|+|||+++..+|..+ |-....+..
T Consensus 99 ~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~ 134 (297)
T 1j8m_F 99 YVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGA 134 (297)
T ss_dssp EEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEec
Confidence 477788999999999999988665 555554443
No 279
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=95.89 E-value=0.023 Score=62.79 Aligned_cols=25 Identities=24% Similarity=0.453 Sum_probs=23.2
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGI 79 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~ 79 (321)
..+|.||.|||||++++++.+.+..
T Consensus 446 ~vaivG~sGsGKSTll~ll~~~~~~ 470 (1321)
T 4f4c_A 446 TVALVGSSGCGKSTIISLLLRYYDV 470 (1321)
T ss_dssp EEEEEECSSSCHHHHHHHHTTSSCC
T ss_pred EEEEEecCCCcHHHHHHHhcccccc
Confidence 7899999999999999999988765
No 280
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.87 E-value=0.013 Score=59.33 Aligned_cols=25 Identities=20% Similarity=0.444 Sum_probs=22.5
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGI 79 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~ 79 (321)
+++|.||+|||||+++++++.....
T Consensus 383 ~~~ivG~sGsGKSTll~~l~g~~~p 407 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVNLLMRFYDV 407 (598)
T ss_dssp EEEEECCTTSSTTHHHHHHTTSSCC
T ss_pred EEEEECCCCCcHHHHHHHHhcCcCC
Confidence 8999999999999999999987643
No 281
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=95.85 E-value=0.021 Score=58.60 Aligned_cols=33 Identities=18% Similarity=0.363 Sum_probs=26.6
Q ss_pred HhccccCCCCcHHHHHHHHHHHc-------CCceEEeecc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM-------GIEPVIMSAG 87 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~-------g~~~i~vs~~ 87 (321)
-+++.|.+|+|||.+.+.+...+ .+.|+.+...
T Consensus 216 HlLIaG~TGSGKS~~L~tlI~sLl~~~sP~ev~lilIDpK 255 (574)
T 2iut_A 216 HLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIMIDPK 255 (574)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECSS
T ss_pred eeEEECCCCCCHHHHHHHHHHHHHHhCCCcceEEEEeCCC
Confidence 79999999999999999877654 3467777654
No 282
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.85 E-value=0.0029 Score=54.56 Aligned_cols=24 Identities=29% Similarity=0.429 Sum_probs=21.6
Q ss_pred HhccccCCCCcHHHHHHHHHHHcC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMG 78 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g 78 (321)
+++|.||+|+|||+++++++....
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHhhCc
Confidence 578999999999999999998764
No 283
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.81 E-value=0.01 Score=58.59 Aligned_cols=31 Identities=16% Similarity=0.244 Sum_probs=24.6
Q ss_pred HhccccCCCCcHHHHHHHHHHHc---CCceEEee
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM---GIEPVIMS 85 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~---g~~~i~vs 85 (321)
++++.||||+|||+++..+|..+ |-.+..+.
T Consensus 99 vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~ 132 (433)
T 3kl4_A 99 IIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVA 132 (433)
T ss_dssp EEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 77888999999999998888544 66665555
No 284
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.80 E-value=0.0029 Score=59.36 Aligned_cols=24 Identities=17% Similarity=0.245 Sum_probs=22.4
Q ss_pred HhccccCCCCcHHHHHHHHHHHcC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMG 78 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g 78 (321)
+++|.||+|||||+++++++..+.
T Consensus 92 ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 92 IIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCchHHHHHHHHHhhcc
Confidence 899999999999999999999774
No 285
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=95.77 E-value=0.0047 Score=68.25 Aligned_cols=24 Identities=29% Similarity=0.360 Sum_probs=21.7
Q ss_pred HhccccCCCCcHHHHHHHHHHHcC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMG 78 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g 78 (321)
.++|.||.|||||+++++++.-..
T Consensus 1107 ~vaIVG~SGsGKSTL~~lL~rl~~ 1130 (1321)
T 4f4c_A 1107 TLALVGPSGCGKSTVVALLERFYD 1130 (1321)
T ss_dssp EEEEECSTTSSTTSHHHHHTTSSC
T ss_pred EEEEECCCCChHHHHHHHHhcCcc
Confidence 789999999999999999987654
No 286
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=95.75 E-value=0.0028 Score=59.83 Aligned_cols=23 Identities=22% Similarity=0.355 Sum_probs=22.2
Q ss_pred HhccccCCCCcHHHHHHHHHHHc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM 77 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~ 77 (321)
+++|.||+|||||+|+++++.-+
T Consensus 128 ~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhhhc
Confidence 89999999999999999999987
No 287
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=95.75 E-value=0.0034 Score=52.23 Aligned_cols=25 Identities=32% Similarity=0.379 Sum_probs=22.7
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGI 79 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~ 79 (321)
+.+|+||.|||||++.+|++.-++.
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~~ 52 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLGG 52 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred cEEEECCCCCCHHHHHHHHHHHHcC
Confidence 6799999999999999999988764
No 288
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.75 E-value=0.02 Score=52.97 Aligned_cols=24 Identities=17% Similarity=0.153 Sum_probs=20.5
Q ss_pred hHhccccCCCCcHHHHHHHHHHHc
Q 020787 54 ASLCIWGGKGQGKSFQTELIFQAM 77 (321)
Q Consensus 54 ~iLgL~GPPGcGKTllaravA~e~ 77 (321)
.++++.||+|+|||+++..+|..+
T Consensus 99 ~~i~i~g~~G~GKTT~~~~la~~~ 122 (295)
T 1ls1_A 99 NLWFLVGLQGSGKTTTAAKLALYY 122 (295)
T ss_dssp EEEEEECCTTTTHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 377788999999999999988654
No 289
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=95.74 E-value=0.0079 Score=61.12 Aligned_cols=36 Identities=8% Similarity=0.134 Sum_probs=30.1
Q ss_pred HhccccCCCCcHHHHHHHHHHHcC----CceEEeeccccc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMG----IEPVIMSAGELE 90 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g----~~~i~vs~~eL~ 90 (321)
++.|.|+||+|||++|++++++++ .+++.+++..+-
T Consensus 398 ~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ir 437 (573)
T 1m8p_A 398 TIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVR 437 (573)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHHH
T ss_pred EEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHHH
Confidence 578999999999999999999987 677777765443
No 290
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=95.68 E-value=0.0029 Score=56.00 Aligned_cols=22 Identities=18% Similarity=0.176 Sum_probs=20.7
Q ss_pred HhccccCCCCcHHHHHHHHHHH
Q 020787 55 SLCIWGGKGQGKSFQTELIFQA 76 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e 76 (321)
+++|.||+|||||+|.++++..
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7899999999999999999975
No 291
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.64 E-value=0.009 Score=55.51 Aligned_cols=31 Identities=13% Similarity=0.268 Sum_probs=24.4
Q ss_pred HhccccCCCCcHHHHHHHHHHHc----CCceEEee
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM----GIEPVIMS 85 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~----g~~~i~vs 85 (321)
+++|.||+|+|||+++..+|..+ |-.+..+.
T Consensus 107 vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~ 141 (296)
T 2px0_A 107 YIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFIT 141 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 88899999999999999998654 44554444
No 292
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=95.62 E-value=0.014 Score=64.45 Aligned_cols=32 Identities=19% Similarity=0.131 Sum_probs=25.1
Q ss_pred HhccccCCCCcHHHHHHHHHHHc--------CCceEEeec
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM--------GIEPVIMSA 86 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~--------g~~~i~vs~ 86 (321)
+++|+||+|.|||+||+.++... ++-++.++.
T Consensus 152 VV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~ 191 (1221)
T 1vt4_I 152 NVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKN 191 (1221)
T ss_dssp EEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCC
T ss_pred EEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCC
Confidence 67899999999999999998643 345555543
No 293
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.60 E-value=0.011 Score=58.00 Aligned_cols=25 Identities=24% Similarity=0.231 Sum_probs=23.0
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGI 79 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~ 79 (321)
+++|.||+|+|||++.++++..+..
T Consensus 169 ii~I~GpnGSGKTTlL~allg~l~~ 193 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQELNS 193 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHCC
T ss_pred eEEEECCCCCCHHHHHHHHHhhcCC
Confidence 7899999999999999999998754
No 294
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=95.60 E-value=0.0028 Score=56.31 Aligned_cols=24 Identities=25% Similarity=0.205 Sum_probs=21.7
Q ss_pred HhccccCCCCcHHHHHHHHHHHcC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMG 78 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g 78 (321)
+++|.||+|||||+|.++++.-..
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~~ 55 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLDA 55 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 899999999999999999987654
No 295
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.59 E-value=0.0041 Score=55.32 Aligned_cols=24 Identities=17% Similarity=0.193 Sum_probs=22.3
Q ss_pred HhccccCCCCcHHHHHHHHHHHcC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMG 78 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g 78 (321)
+++|.||+|+|||+|+++++....
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhccCC
Confidence 788999999999999999999875
No 296
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=95.59 E-value=0.0037 Score=56.49 Aligned_cols=30 Identities=27% Similarity=0.341 Sum_probs=25.1
Q ss_pred cccchhhhhHhccccCCCCcHHHHHHHHHHHcC
Q 020787 46 YYIAPVFMASLCIWGGKGQGKSFQTELIFQAMG 78 (321)
Q Consensus 46 ~~~~p~f~~iLgL~GPPGcGKTllaravA~e~g 78 (321)
+-+++ ++++|.||+|||||+|.++++.-..
T Consensus 20 l~i~~---e~~~liG~nGsGKSTLl~~l~Gl~~ 49 (240)
T 2onk_A 20 FEMGR---DYCVLLGPTGAGKSVFLELIAGIVK 49 (240)
T ss_dssp EEECS---SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEECC---EEEEEECCCCCCHHHHHHHHhCCCC
Confidence 44554 6899999999999999999998654
No 297
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=95.57 E-value=0.028 Score=56.74 Aligned_cols=32 Identities=19% Similarity=0.391 Sum_probs=25.2
Q ss_pred HhccccCCCCcHHHHHHHHHHHc-------CCceEEeec
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM-------GIEPVIMSA 86 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~-------g~~~i~vs~ 86 (321)
-+++.|++|+|||.+++++...+ .+.++.+..
T Consensus 169 HlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDp 207 (512)
T 2ius_A 169 HLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDP 207 (512)
T ss_dssp SEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECC
Confidence 89999999999999999987643 345666654
No 298
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=95.55 E-value=0.0059 Score=54.86 Aligned_cols=29 Identities=28% Similarity=0.386 Sum_probs=25.4
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEe
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIM 84 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~v 84 (321)
-+||.|..|||||+.++.+++ +|+++|..
T Consensus 11 ~iglTGgigsGKStv~~~l~~-~g~~vida 39 (210)
T 4i1u_A 11 AIGLTGGIGSGKTTVADLFAA-RGASLVDT 39 (210)
T ss_dssp EEEEECCTTSCHHHHHHHHHH-TTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcEEEC
Confidence 479999999999999999987 99887653
No 299
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.52 E-value=0.0043 Score=57.61 Aligned_cols=25 Identities=28% Similarity=0.428 Sum_probs=23.2
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGI 79 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~ 79 (321)
+++|.||+|||||+++++++..++.
T Consensus 33 ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 33 FIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhh
Confidence 7899999999999999999998874
No 300
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=95.52 E-value=0.014 Score=52.16 Aligned_cols=32 Identities=16% Similarity=0.046 Sum_probs=26.1
Q ss_pred HhccccCCCCcHH-HHHHHHHH--HcCCceEEeec
Q 020787 55 SLCIWGGKGQGKS-FQTELIFQ--AMGIEPVIMSA 86 (321)
Q Consensus 55 iLgL~GPPGcGKT-llaravA~--e~g~~~i~vs~ 86 (321)
++.+|||.|+||| .|.+++.+ +.+...+.+++
T Consensus 22 l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp 56 (195)
T 1w4r_A 22 IQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKY 56 (195)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEcc
Confidence 8899999999999 88888865 45667777763
No 301
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=95.50 E-value=0.0084 Score=60.52 Aligned_cols=34 Identities=15% Similarity=0.177 Sum_probs=27.1
Q ss_pred HhccccCCCCcHHHHHHHHHHHcC---CceEEeeccc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMG---IEPVIMSAGE 88 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g---~~~i~vs~~e 88 (321)
++.|.|+||||||++|+++++.++ .++..+++-.
T Consensus 374 ~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~ 410 (546)
T 2gks_A 374 CVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDV 410 (546)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHH
T ss_pred EEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchH
Confidence 678999999999999999999875 3555565543
No 302
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=95.49 E-value=0.0035 Score=56.16 Aligned_cols=25 Identities=28% Similarity=0.185 Sum_probs=22.2
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGI 79 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~ 79 (321)
+++|.||+|||||+|.++++.-...
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl~~p 57 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCLDKP 57 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCC
Confidence 8999999999999999999876543
No 303
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=95.45 E-value=0.0036 Score=57.04 Aligned_cols=25 Identities=28% Similarity=0.191 Sum_probs=22.3
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGI 79 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~ 79 (321)
+++|.||+|||||+|.++++.-...
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl~~p 58 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFLEKP 58 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 8999999999999999999876543
No 304
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=95.45 E-value=0.004 Score=60.20 Aligned_cols=24 Identities=25% Similarity=0.200 Sum_probs=21.9
Q ss_pred HhccccCCCCcHHHHHHHHHHHcC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMG 78 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g 78 (321)
+++|.||+|||||+|.|++|.-..
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~~ 55 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFEQ 55 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCchHHHHHHHHhcCCC
Confidence 889999999999999999998653
No 305
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=95.41 E-value=0.0038 Score=56.54 Aligned_cols=24 Identities=29% Similarity=0.300 Sum_probs=21.8
Q ss_pred HhccccCCCCcHHHHHHHHHHHcC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMG 78 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g 78 (321)
+++|.||+|||||+|.++++.-..
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~~ 58 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFLK 58 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 899999999999999999987654
No 306
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=95.41 E-value=0.018 Score=54.30 Aligned_cols=23 Identities=26% Similarity=0.263 Sum_probs=21.2
Q ss_pred HhccccCCCCcHHHHHHHHHHHc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM 77 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~ 77 (321)
+++|.||||+|||++.++++..+
T Consensus 57 ~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 57 RVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhh
Confidence 78999999999999999999754
No 307
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=95.39 E-value=0.0061 Score=60.22 Aligned_cols=32 Identities=25% Similarity=0.215 Sum_probs=28.0
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeec
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSA 86 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~ 86 (321)
++.|.||+|+|||.++..+|+.++..+|++.+
T Consensus 4 ~i~i~GptgsGKttla~~La~~~~~~iis~Ds 35 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSIQLAQKFNGEVINSDS 35 (409)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHTEEEEECCT
T ss_pred EEEEECcchhhHHHHHHHHHHHCCCeEeecCc
Confidence 46789999999999999999999988777644
No 308
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=95.39 E-value=0.019 Score=62.24 Aligned_cols=21 Identities=19% Similarity=-0.005 Sum_probs=19.1
Q ss_pred hHhccccCCCCcHHHHHHHHH
Q 020787 54 ASLCIWGGKGQGKSFQTELIF 74 (321)
Q Consensus 54 ~iLgL~GPPGcGKTllaravA 74 (321)
.+++|.||+|+|||++.|+++
T Consensus 790 ~i~~ItGpNgsGKSTlLr~iG 810 (1022)
T 2o8b_B 790 YCVLVTGPNMGGKSTLMRQAG 810 (1022)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHHH
Confidence 478999999999999999984
No 309
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=95.38 E-value=0.004 Score=55.86 Aligned_cols=23 Identities=26% Similarity=0.335 Sum_probs=21.4
Q ss_pred HhccccCCCCcHHHHHHHHHHHc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM 77 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~ 77 (321)
+++|.||+|||||+|.++++...
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 89999999999999999998764
No 310
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=95.37 E-value=0.014 Score=52.57 Aligned_cols=31 Identities=19% Similarity=0.292 Sum_probs=22.0
Q ss_pred HhccccCCCCcHHHHHHHHHHHc-------CCceEEee
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM-------GIEPVIMS 85 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~-------g~~~i~vs 85 (321)
.+.|-||+|||||++++.+++.+ |.+.+...
T Consensus 27 ~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~r 64 (227)
T 3v9p_A 27 FITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTR 64 (227)
T ss_dssp EEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeeec
Confidence 45678999999999999999988 55555444
No 311
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=95.37 E-value=0.0047 Score=59.64 Aligned_cols=24 Identities=21% Similarity=0.252 Sum_probs=21.9
Q ss_pred HhccccCCCCcHHHHHHHHHHHcC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMG 78 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g 78 (321)
+++|.||+|||||+|.+++|.-..
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~~ 54 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLEE 54 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCcHHHHHHHHHHcCCC
Confidence 889999999999999999997654
No 312
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=95.36 E-value=0.0047 Score=59.56 Aligned_cols=24 Identities=25% Similarity=0.224 Sum_probs=21.9
Q ss_pred HhccccCCCCcHHHHHHHHHHHcC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMG 78 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g 78 (321)
+++|.||+|||||+|.+++|.-..
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~~ 54 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIYK 54 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCchHHHHHHHHhcCCC
Confidence 889999999999999999998654
No 313
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=95.35 E-value=0.012 Score=56.05 Aligned_cols=28 Identities=25% Similarity=0.429 Sum_probs=25.3
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceE
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPV 82 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i 82 (321)
+++|.||+|||||+|.+.+++.......
T Consensus 73 ~~gIiG~nGaGKTTLl~~I~g~~~~~~g 100 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLGMICNGASADII 100 (347)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHSCCSEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCEE
Confidence 8999999999999999999999876543
No 314
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=95.35 E-value=0.0048 Score=60.14 Aligned_cols=24 Identities=25% Similarity=0.185 Sum_probs=22.0
Q ss_pred HhccccCCCCcHHHHHHHHHHHcC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMG 78 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g 78 (321)
+++|.||+|||||+|.+++|.-..
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~~ 54 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLET 54 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEEcCCCchHHHHHHHHHcCCC
Confidence 899999999999999999998654
No 315
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=95.34 E-value=0.006 Score=61.87 Aligned_cols=33 Identities=27% Similarity=0.435 Sum_probs=21.5
Q ss_pred HhccccCCCCcHHHH-HHHHHH--HcCCceEEeecc
Q 020787 55 SLCIWGGKGQGKSFQ-TELIFQ--AMGIEPVIMSAG 87 (321)
Q Consensus 55 iLgL~GPPGcGKTll-aravA~--e~g~~~i~vs~~ 87 (321)
+.+|+||||||||.. +.+|+. +.|..++.++.+
T Consensus 207 ~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~T 242 (646)
T 4b3f_X 207 LAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPS 242 (646)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCc
Confidence 678999999999964 444433 235555555543
No 316
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=95.34 E-value=0.0049 Score=59.40 Aligned_cols=24 Identities=17% Similarity=0.225 Sum_probs=21.8
Q ss_pred HhccccCCCCcHHHHHHHHHHHcC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMG 78 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g 78 (321)
+++|.||+|||||+|.+++|.-..
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~~ 54 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGIYK 54 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSSC
T ss_pred EEEEEcCCCchHHHHHHHHHCCCC
Confidence 789999999999999999997653
No 317
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=95.34 E-value=0.005 Score=55.53 Aligned_cols=22 Identities=23% Similarity=0.333 Sum_probs=20.8
Q ss_pred HhccccCCCCcHHHHHHHHHHH
Q 020787 55 SLCIWGGKGQGKSFQTELIFQA 76 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e 76 (321)
+++|.||+|||||+|.++++.-
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 8999999999999999999875
No 318
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=95.31 E-value=0.005 Score=59.27 Aligned_cols=24 Identities=25% Similarity=0.268 Sum_probs=21.9
Q ss_pred HhccccCCCCcHHHHHHHHHHHcC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMG 78 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g 78 (321)
+++|.||+|||||+|.+++|.-..
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~~ 66 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLER 66 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 889999999999999999997654
No 319
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.30 E-value=0.0044 Score=55.60 Aligned_cols=24 Identities=21% Similarity=0.303 Sum_probs=21.8
Q ss_pred HhccccCCCCcHHHHHHHHHHHcC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMG 78 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g 78 (321)
+++|.||+|||||+|.++++.-..
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~~ 57 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLVR 57 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 889999999999999999987654
No 320
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=95.29 E-value=0.0051 Score=59.52 Aligned_cols=24 Identities=25% Similarity=0.284 Sum_probs=21.8
Q ss_pred HhccccCCCCcHHHHHHHHHHHcC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMG 78 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g 78 (321)
+++|.||+|||||+|.+++|.-..
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl~~ 62 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGLEE 62 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCChHHHHHHHHHcCCC
Confidence 889999999999999999997653
No 321
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=95.27 E-value=0.018 Score=51.49 Aligned_cols=29 Identities=17% Similarity=0.319 Sum_probs=24.3
Q ss_pred hccccCCCCcHHHHHHHHHHHcCCceEEe
Q 020787 56 LCIWGGKGQGKSFQTELIFQAMGIEPVIM 84 (321)
Q Consensus 56 LgL~GPPGcGKTllaravA~e~g~~~i~v 84 (321)
+.+.||+|||||++++.+++.++.....+
T Consensus 8 i~~eG~~g~GKst~~~~l~~~l~~~~~~~ 36 (216)
T 3tmk_A 8 ILIEGLDRTGKTTQCNILYKKLQPNCKLL 36 (216)
T ss_dssp EEEEECSSSSHHHHHHHHHHHHCSSEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhcccceEE
Confidence 45789999999999999999999744333
No 322
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=95.27 E-value=0.0054 Score=56.04 Aligned_cols=22 Identities=27% Similarity=0.312 Sum_probs=20.9
Q ss_pred HhccccCCCCcHHHHHHHHHHH
Q 020787 55 SLCIWGGKGQGKSFQTELIFQA 76 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e 76 (321)
+++|.||+|||||+|.++++.-
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 8999999999999999999975
No 323
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=95.26 E-value=0.005 Score=55.61 Aligned_cols=26 Identities=27% Similarity=0.298 Sum_probs=23.5
Q ss_pred hHhccccCCCCcHHHHHHHHHHHcCC
Q 020787 54 ASLCIWGGKGQGKSFQTELIFQAMGI 79 (321)
Q Consensus 54 ~iLgL~GPPGcGKTllaravA~e~g~ 79 (321)
.+++|.||+|||||++.++++.-+..
T Consensus 28 ~~~~i~GpnGsGKSTll~~i~g~~~~ 53 (227)
T 1qhl_A 28 LVTTLSGGNGAGKSTTMAAFVTALIP 53 (227)
T ss_dssp HHHHHHSCCSHHHHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhccccc
Confidence 58899999999999999999988754
No 324
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.21 E-value=0.0077 Score=52.87 Aligned_cols=25 Identities=28% Similarity=0.274 Sum_probs=22.1
Q ss_pred hccccCCCCcHHHHHHHHHHHc-CCc
Q 020787 56 LCIWGGKGQGKSFQTELIFQAM-GIE 80 (321)
Q Consensus 56 LgL~GPPGcGKTllaravA~e~-g~~ 80 (321)
+.|.|++|||||++++.+++.+ ++.
T Consensus 5 i~~~G~~g~GKtt~~~~l~~~l~~~~ 30 (241)
T 2ocp_A 5 LSIEGNIAVGKSTFVKLLTKTYPEWH 30 (241)
T ss_dssp EEEEECTTSSHHHHHHHHHHHCTTSE
T ss_pred EEEEcCCCCCHHHHHHHHHHHcCCCe
Confidence 4689999999999999999999 543
No 325
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=95.19 E-value=0.0049 Score=56.45 Aligned_cols=24 Identities=29% Similarity=0.379 Sum_probs=22.0
Q ss_pred HhccccCCCCcHHHHHHHHHHHcC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMG 78 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g 78 (321)
+++|.||+|||||+|.++++.-..
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl~~ 62 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGYLS 62 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSSSC
T ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Confidence 899999999999999999998654
No 326
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=95.19 E-value=0.0042 Score=59.52 Aligned_cols=24 Identities=33% Similarity=0.358 Sum_probs=21.8
Q ss_pred HhccccCCCCcHHHHHHHHHHHcC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMG 78 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g 78 (321)
+++|.||+|||||+|.+++|.-..
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~~ 51 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFHV 51 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSSC
T ss_pred EEEEECCCCccHHHHHHHHHcCCC
Confidence 889999999999999999997653
No 327
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=95.18 E-value=0.014 Score=64.30 Aligned_cols=25 Identities=24% Similarity=0.379 Sum_probs=22.7
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGI 79 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~ 79 (321)
.++|.||+|||||+++++++.....
T Consensus 418 ~~~ivG~sGsGKSTl~~ll~g~~~~ 442 (1284)
T 3g5u_A 418 TVALVGNSGCGKSTTVQLMQRLYDP 442 (1284)
T ss_dssp EEEEECCSSSSHHHHHHHTTTSSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 8999999999999999999887654
No 328
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.16 E-value=0.019 Score=50.85 Aligned_cols=30 Identities=23% Similarity=0.391 Sum_probs=23.9
Q ss_pred hccccCCCCcHHHHHHHHHHHcC---CceEEee
Q 020787 56 LCIWGGKGQGKSFQTELIFQAMG---IEPVIMS 85 (321)
Q Consensus 56 LgL~GPPGcGKTllaravA~e~g---~~~i~vs 85 (321)
+.|-||+|||||++++.+++.+. .+.+...
T Consensus 9 i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~ 41 (213)
T 4edh_A 9 VTLEGPEGAGKSTNRDYLAERLRERGIEVQLTR 41 (213)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCccccc
Confidence 46789999999999999998875 4555443
No 329
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=95.15 E-value=0.03 Score=56.66 Aligned_cols=32 Identities=19% Similarity=0.278 Sum_probs=27.4
Q ss_pred HhccccCCCCcHHHH-HHHHHHHcCCceEEeec
Q 020787 55 SLCIWGGKGQGKSFQ-TELIFQAMGIEPVIMSA 86 (321)
Q Consensus 55 iLgL~GPPGcGKTll-aravA~e~g~~~i~vs~ 86 (321)
..||.||+|||||.| ...+++..+..+++|-+
T Consensus 164 R~~Ifg~~g~GKT~Lal~~I~~~~~~dv~~V~~ 196 (502)
T 2qe7_A 164 RELIIGDRQTGKTTIAIDTIINQKGQDVICIYV 196 (502)
T ss_dssp BCEEEECSSSCHHHHHHHHHHGGGSCSEEEEEE
T ss_pred EEEEECCCCCCchHHHHHHHHHhhcCCcEEEEE
Confidence 789999999999999 67999999888765544
No 330
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=95.15 E-value=0.0053 Score=54.67 Aligned_cols=24 Identities=21% Similarity=0.231 Sum_probs=21.8
Q ss_pred HhccccCCCCcHHHHHHHHHHHcC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMG 78 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g 78 (321)
+++|.||+|||||+|.++++.-..
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~~ 60 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYLK 60 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 899999999999999999987654
No 331
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=95.12 E-value=0.0053 Score=56.31 Aligned_cols=24 Identities=21% Similarity=0.194 Sum_probs=22.0
Q ss_pred HhccccCCCCcHHHHHHHHHHHcC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMG 78 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g 78 (321)
+++|.||+|||||+|.++++.-..
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl~~ 75 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLLED 75 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEEcCCCCcHHHHHHHHHcCCC
Confidence 899999999999999999987654
No 332
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=95.10 E-value=0.0054 Score=56.69 Aligned_cols=24 Identities=29% Similarity=0.322 Sum_probs=21.8
Q ss_pred HhccccCCCCcHHHHHHHHHHHcC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMG 78 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g 78 (321)
+++|-||+|||||+|.++++.-..
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl~~ 59 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGILK 59 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC
Confidence 899999999999999999987653
No 333
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.10 E-value=0.033 Score=55.97 Aligned_cols=32 Identities=19% Similarity=0.281 Sum_probs=25.3
Q ss_pred HhccccCCCCcHHHHHHHHHHHc---CCceEEeec
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM---GIEPVIMSA 86 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~---g~~~i~vs~ 86 (321)
++.|.|+||+|||+++..+|..+ |-.+..|++
T Consensus 103 vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 56778999999999999999655 666666654
No 334
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.09 E-value=0.039 Score=52.19 Aligned_cols=23 Identities=17% Similarity=0.221 Sum_probs=21.3
Q ss_pred HhccccCCCCcHHHHHHHHHHHc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM 77 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~ 77 (321)
+++|.||+|||||++++.+|..+
T Consensus 131 vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 131 VIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 88999999999999999999765
No 335
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=95.08 E-value=0.0056 Score=54.53 Aligned_cols=24 Identities=25% Similarity=0.396 Sum_probs=22.1
Q ss_pred HhccccCCCCcHHHHHHHHHHHcC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMG 78 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g 78 (321)
+++|.||+|||||+|.++++....
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGELE 59 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 889999999999999999998764
No 336
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=95.04 E-value=0.0034 Score=55.96 Aligned_cols=28 Identities=29% Similarity=0.268 Sum_probs=23.7
Q ss_pred HhccccCCCCcHHHHHHHHHHHc-CCceE
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM-GIEPV 82 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~-g~~~i 82 (321)
.+.|.|++|||||++++.+++.+ ++.++
T Consensus 26 ~I~ieG~~GsGKST~~~~L~~~l~~~~~i 54 (263)
T 1p5z_B 26 KISIEGNIAAGKSTFVNILKQLCEDWEVV 54 (263)
T ss_dssp EEEEECSTTSSHHHHHTTTGGGCTTEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCCEEE
Confidence 56889999999999999999998 54333
No 337
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=95.03 E-value=0.0059 Score=54.78 Aligned_cols=24 Identities=25% Similarity=0.229 Sum_probs=21.8
Q ss_pred HhccccCCCCcHHHHHHHHHHHcC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMG 78 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g 78 (321)
+++|.||+|||||+|.++++.-..
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERFYQ 53 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 899999999999999999987653
No 338
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=95.03 E-value=0.027 Score=57.21 Aligned_cols=68 Identities=15% Similarity=0.204 Sum_probs=46.9
Q ss_pred HhccccCCCCcHHHH-HHHHHHHcCCceEEeeccccccccCCCcHHHHHHHHHHH-------------------------
Q 020787 55 SLCIWGGKGQGKSFQ-TELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTA------------------------- 108 (321)
Q Consensus 55 iLgL~GPPGcGKTll-aravA~e~g~~~i~vs~~eL~s~~~GEser~IR~~F~~A------------------------- 108 (321)
..||.||+|||||.| ...+++..+..+++|-+. +||-.+-+++..++-
T Consensus 177 R~~I~g~~g~GKT~Lal~~I~~~~~~dv~~V~~~------IGeR~~Ev~e~~~~~~~~g~m~rtvvV~atad~p~~~r~~ 250 (515)
T 2r9v_A 177 RELIIGDRQTGKTAIAIDTIINQKGQGVYCIYVA------IGQKKSAIARIIDKLRQYGAMEYTTVVVASASDPASLQYI 250 (515)
T ss_dssp BEEEEEETTSSHHHHHHHHHHTTTTTTEEEEEEE------ESCCHHHHHHHHHHHHHTTGGGGEEEEEECTTSCHHHHHH
T ss_pred EEEEEcCCCCCccHHHHHHHHHhhcCCcEEEEEE------cCCCcHHHHHHHHHHHhCCCcceeEEEEECCCCCHHHHHH
Confidence 789999999999999 579999998887655442 344444444433221
Q ss_pred --------HhhhhhcCCceEEEeecccc
Q 020787 109 --------SQVVQNQGKMSCLMINDIDA 128 (321)
Q Consensus 109 --------~~~~~~~gaPcILFIDEIDA 128 (321)
+|..+.+|+-.+|++|++-.
T Consensus 251 a~~~a~tiAEyfrd~G~dVLli~DslTr 278 (515)
T 2r9v_A 251 APYAGCAMGEYFAYSGRDALVVYDDLSK 278 (515)
T ss_dssp HHHHHHHHHHHHHTTTCEEEEEEETHHH
T ss_pred HHHHHHHHHHHHHHcCCcEEEEeccHHH
Confidence 12234568899999998764
No 339
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=95.03 E-value=0.004 Score=59.67 Aligned_cols=24 Identities=25% Similarity=0.237 Sum_probs=21.8
Q ss_pred HhccccCCCCcHHHHHHHHHHHcC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMG 78 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g 78 (321)
+++|.||+|||||+|.+++|.-..
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~~ 56 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLDV 56 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 889999999999999999997653
No 340
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=95.02 E-value=0.028 Score=56.94 Aligned_cols=47 Identities=17% Similarity=0.256 Sum_probs=35.0
Q ss_pred HhccccCCCCcHHHH-HHHHHHHcCCceEEeeccccccccCCCcHHHHHHHHHH
Q 020787 55 SLCIWGGKGQGKSFQ-TELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRT 107 (321)
Q Consensus 55 iLgL~GPPGcGKTll-aravA~e~g~~~i~vs~~eL~s~~~GEser~IR~~F~~ 107 (321)
..||.||+|||||.+ ...+++..+..+++|-+. +||-.+-+++..++
T Consensus 165 R~~Ifg~~g~GKT~Lal~~I~~~~~~dv~~V~~~------iGeR~~Ev~~~~~~ 212 (507)
T 1fx0_A 165 RELIIGDRQTGKTAVATDTILNQQGQNVICVYVA------IGQKASSVAQVVTN 212 (507)
T ss_dssp BCBEEESSSSSHHHHHHHHHHTCCTTTCEEEEEE------ESCCHHHHHHHHHH
T ss_pred EEEEecCCCCCccHHHHHHHHHhhcCCcEEEEEE------cCCCchHHHHHHHH
Confidence 789999999999999 589999998876655442 45555555555444
No 341
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=95.01 E-value=0.006 Score=55.10 Aligned_cols=24 Identities=38% Similarity=0.356 Sum_probs=22.0
Q ss_pred HhccccCCCCcHHHHHHHHHHHcC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMG 78 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g 78 (321)
+++|.||+|||||+|.++++.-..
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~~ 60 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFYI 60 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 899999999999999999988754
No 342
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=95.00 E-value=0.0061 Score=55.58 Aligned_cols=24 Identities=25% Similarity=0.386 Sum_probs=21.7
Q ss_pred HhccccCCCCcHHHHHHHHHHHcC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMG 78 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g 78 (321)
+++|.||+|||||+|.++++.-..
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl~~ 58 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGLIE 58 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 899999999999999999987653
No 343
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=95.00 E-value=0.006 Score=56.34 Aligned_cols=24 Identities=17% Similarity=0.255 Sum_probs=22.0
Q ss_pred HhccccCCCCcHHHHHHHHHHHcC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMG 78 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g 78 (321)
+++|.||+|||||+|.++++.-..
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~~ 72 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYEP 72 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 899999999999999999987654
No 344
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.95 E-value=0.0063 Score=55.51 Aligned_cols=24 Identities=21% Similarity=0.332 Sum_probs=21.8
Q ss_pred HhccccCCCCcHHHHHHHHHHHcC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMG 78 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g 78 (321)
+++|.||+|||||+|.++++.-..
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl~~ 66 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTLIK 66 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 899999999999999999987654
No 345
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=94.95 E-value=0.0063 Score=55.29 Aligned_cols=24 Identities=25% Similarity=0.228 Sum_probs=21.8
Q ss_pred HhccccCCCCcHHHHHHHHHHHcC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMG 78 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g 78 (321)
+++|.||+|||||+|.++++.-..
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 789999999999999999987654
No 346
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=94.89 E-value=0.0067 Score=55.60 Aligned_cols=24 Identities=25% Similarity=0.313 Sum_probs=22.0
Q ss_pred HhccccCCCCcHHHHHHHHHHHcC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMG 78 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g 78 (321)
+++|.||+|||||+|.++++.-..
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl~~ 70 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNLYQ 70 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 899999999999999999988654
No 347
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=94.89 E-value=0.0094 Score=57.87 Aligned_cols=23 Identities=30% Similarity=0.497 Sum_probs=21.0
Q ss_pred HhccccCCCCcHHHHHHHHHHHc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM 77 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~ 77 (321)
.++|.||||||||+++.+++..+
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 67999999999999999998776
No 348
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.88 E-value=0.0066 Score=55.01 Aligned_cols=35 Identities=20% Similarity=0.117 Sum_probs=29.2
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeeccccc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELE 90 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~ 90 (321)
.++|.||+|+|||.+|.+++++.. .+|....-.+.
T Consensus 36 ~ilI~GpsGsGKStLA~~La~~g~-~iIsdDs~~v~ 70 (205)
T 2qmh_A 36 GVLITGDSGVGKSETALELVQRGH-RLIADDRVDVY 70 (205)
T ss_dssp EEEEECCCTTTTHHHHHHHHTTTC-EEEESSEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhCC-eEEecchhhee
Confidence 678999999999999999998876 77766665554
No 349
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=94.86 E-value=0.034 Score=55.83 Aligned_cols=47 Identities=13% Similarity=0.058 Sum_probs=34.7
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCc-----eEEeeccccccccCCCcHHHHHHHHHH
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIE-----PVIMSAGELESERAGEPGKLIRERYRT 107 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~-----~i~vs~~eL~s~~~GEser~IR~~F~~ 107 (321)
.+||.|++|+|||.|...+|+...++ +++|-+. +||-.+-+++.+++
T Consensus 154 r~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~------iGER~~Ev~e~~~~ 205 (469)
T 2c61_A 154 KLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAA------MGITNEEAQYFMSD 205 (469)
T ss_dssp BCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEE------EEECHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEE------ccCCcHHHHHHHHH
Confidence 77899999999999999999999873 5555442 45555555555443
No 350
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=94.86 E-value=0.0068 Score=55.02 Aligned_cols=24 Identities=29% Similarity=0.418 Sum_probs=21.9
Q ss_pred HhccccCCCCcHHHHHHHHHHHcC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMG 78 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g 78 (321)
+++|.||+|||||+|.++++.-..
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIHR 56 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 899999999999999999998653
No 351
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=94.85 E-value=0.007 Score=55.06 Aligned_cols=23 Identities=26% Similarity=0.485 Sum_probs=21.4
Q ss_pred HhccccCCCCcHHHHHHHHHHHc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM 77 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~ 77 (321)
+++|.||+|||||+|.++++.-.
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 89999999999999999998764
No 352
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=94.85 E-value=0.0076 Score=58.66 Aligned_cols=22 Identities=23% Similarity=0.356 Sum_probs=20.7
Q ss_pred HhccccCCCCcHHHHHHHHHHH
Q 020787 55 SLCIWGGKGQGKSFQTELIFQA 76 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e 76 (321)
+++|-||+|||||++.+++|.-
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCChHHHHHHHHhCC
Confidence 8999999999999999999964
No 353
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=94.78 E-value=0.0098 Score=60.02 Aligned_cols=25 Identities=4% Similarity=-0.031 Sum_probs=23.5
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGI 79 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~ 79 (321)
.+.|.|++|||||++++++|++++.
T Consensus 397 ~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 397 SIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp EEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred EEEecccCCCCHHHHHHHHHHHHHH
Confidence 6788999999999999999999985
No 354
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=94.74 E-value=0.01 Score=55.53 Aligned_cols=37 Identities=19% Similarity=0.204 Sum_probs=27.3
Q ss_pred hHhccccCCCCcHHHHHHHHHHHcCC--ceEEeeccccc
Q 020787 54 ASLCIWGGKGQGKSFQTELIFQAMGI--EPVIMSAGELE 90 (321)
Q Consensus 54 ~iLgL~GPPGcGKTllaravA~e~g~--~~i~vs~~eL~ 90 (321)
.+++|.||+|||||++++.+|..+.. --+.+.+.++.
T Consensus 103 ~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~ 141 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTF 141 (304)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCS
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCC
Confidence 47889999999999999999976532 23445555543
No 355
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=94.69 E-value=0.051 Score=55.31 Aligned_cols=22 Identities=23% Similarity=0.314 Sum_probs=20.3
Q ss_pred hccccCCCCcHHHHHHHHHHHc
Q 020787 56 LCIWGGKGQGKSFQTELIFQAM 77 (321)
Q Consensus 56 LgL~GPPGcGKTllaravA~e~ 77 (321)
++|.||+|||||++.++++...
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSCC
T ss_pred EEEECCCCChHHHHHHHHhCCC
Confidence 8999999999999999999753
No 356
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=94.69 E-value=0.083 Score=58.27 Aligned_cols=24 Identities=29% Similarity=0.411 Sum_probs=22.0
Q ss_pred HhccccCCCCcHHHHHHHHHHHcC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMG 78 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g 78 (321)
+++|.||.|||||+++++++.-..
T Consensus 1061 ~v~ivG~sGsGKSTl~~~l~g~~~ 1084 (1284)
T 3g5u_A 1061 TLALVGSSGCGKSTVVQLLERFYD 1084 (1284)
T ss_dssp EEEEECSSSTTHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCcC
Confidence 899999999999999999997654
No 357
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=94.68 E-value=0.061 Score=50.58 Aligned_cols=23 Identities=30% Similarity=0.261 Sum_probs=20.9
Q ss_pred HhccccCCCCcHHHHHHHHHHHc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM 77 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~ 77 (321)
+++|.|+||+|||+++.+++..+
T Consensus 81 ~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 81 RVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998775
No 358
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=94.65 E-value=0.041 Score=57.97 Aligned_cols=73 Identities=16% Similarity=0.117 Sum_probs=41.2
Q ss_pred hHhccccCCCCcHHHHHHHHHHH-----cCCce--------------EEeeccccccccCCCcHHHHHHHHHHHHhhhhh
Q 020787 54 ASLCIWGGKGQGKSFQTELIFQA-----MGIEP--------------VIMSAGELESERAGEPGKLIRERYRTASQVVQN 114 (321)
Q Consensus 54 ~iLgL~GPPGcGKTllaravA~e-----~g~~~--------------i~vs~~eL~s~~~GEser~IR~~F~~A~~~~~~ 114 (321)
++++|.||+|+|||++.|+++.- .|..+ -.++..+-+ ..|.|.- .+++.+.|... ..
T Consensus 577 ~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~vpa~~~~i~~v~~i~~~~~~~d~l--~~g~S~~-~~e~~~la~il-~~ 652 (765)
T 1ewq_A 577 ELVLITGPNMAGKSTFLRQTALIALLAQVGSFVPAEEAHLPLFDGIYTRIGASDDL--AGGKSTF-MVEMEEVALIL-KE 652 (765)
T ss_dssp CEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCSEEEEECCC--------CCSHH-HHHHHHHHHHH-HH
T ss_pred cEEEEECCCCCChHHHHHHHHhhhhhcccCceeehhccceeeHHHhhccCCHHHHH--HhcccHH-HHHHHHHHHHH-Hh
Confidence 37999999999999999999853 33210 011111111 1233332 23344444322 11
Q ss_pred cCCceEEEeecccccC
Q 020787 115 QGKMSCLMINDIDAGL 130 (321)
Q Consensus 115 ~gaPcILFIDEIDAg~ 130 (321)
...|++|++||+=+|.
T Consensus 653 a~~p~LlLLDEpgrGT 668 (765)
T 1ewq_A 653 ATENSLVLLDEVGRGT 668 (765)
T ss_dssp CCTTEEEEEESTTTTS
T ss_pred ccCCCEEEEECCCCCC
Confidence 4589999999986554
No 359
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=94.59 E-value=0.016 Score=56.87 Aligned_cols=28 Identities=18% Similarity=0.378 Sum_probs=25.1
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceE
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPV 82 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i 82 (321)
+++|.||+|||||+|.+++|+.......
T Consensus 159 ~~~IvG~sGsGKSTLl~~Iag~~~~~~G 186 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMARYTRADVI 186 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHSCCSEE
T ss_pred EEEEECCCCCCHHHHHHHHhcccCCCeE
Confidence 8899999999999999999999876543
No 360
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=94.59 E-value=0.0089 Score=54.82 Aligned_cols=24 Identities=25% Similarity=0.333 Sum_probs=21.9
Q ss_pred hHhccccCCCCcHHHHHHHHHHHc
Q 020787 54 ASLCIWGGKGQGKSFQTELIFQAM 77 (321)
Q Consensus 54 ~iLgL~GPPGcGKTllaravA~e~ 77 (321)
++++|.||+|||||+|.++++...
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 478999999999999999999875
No 361
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=94.58 E-value=0.044 Score=55.70 Aligned_cols=68 Identities=15% Similarity=0.243 Sum_probs=46.5
Q ss_pred HhccccCCCCcHHHHH-HHHHHHcCCceEEeeccccccccCCCcHHHHHHHHHHH-------------------------
Q 020787 55 SLCIWGGKGQGKSFQT-ELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTA------------------------- 108 (321)
Q Consensus 55 iLgL~GPPGcGKTlla-ravA~e~g~~~i~vs~~eL~s~~~GEser~IR~~F~~A------------------------- 108 (321)
..||.|++|||||.++ .++++..+..+++|-+. +||-.+-+++..++-
T Consensus 164 R~~Ifg~~g~GKT~l~l~~I~n~~~~dv~~V~~~------IGeR~~ev~e~~~~l~~~g~m~~tvvV~atad~p~~~r~~ 237 (513)
T 3oaa_A 164 RELIIGDRQTGKTALAIDAIINQRDSGIKCIYVA------IGQKASTISNVVRKLEEHGALANTIVVVATASESAALQYL 237 (513)
T ss_dssp BCEEEESSSSSHHHHHHHHHHTTSSSSCEEEEEE------ESCCHHHHHHHHHHHHHHSCSTTEEEEEECTTSCHHHHHH
T ss_pred EEEeecCCCCCcchHHHHHHHhhccCCceEEEEE------ecCChHHHHHHHHHHhhcCcccceEEEEECCCCChHHHHH
Confidence 7899999999999995 89999888877655442 344444444443331
Q ss_pred --------HhhhhhcCCceEEEeecccc
Q 020787 109 --------SQVVQNQGKMSCLMINDIDA 128 (321)
Q Consensus 109 --------~~~~~~~gaPcILFIDEIDA 128 (321)
.|..+.+|+-.+|++|++=.
T Consensus 238 a~~~a~tiAEyfrd~G~dVLli~Dsltr 265 (513)
T 3oaa_A 238 APYAGCAMGEYFRDRGEDALIIYDDLSK 265 (513)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEETHHH
T ss_pred HHHHHHHHHHHHHhcCCCEEEEecChHH
Confidence 12223468888999998864
No 362
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=94.52 E-value=0.012 Score=54.87 Aligned_cols=36 Identities=25% Similarity=0.321 Sum_probs=26.8
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCC--ceEEeeccccc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGI--EPVIMSAGELE 90 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~--~~i~vs~~eL~ 90 (321)
+++|.||+|||||++++.+|..+.. --+.+.+.++.
T Consensus 102 vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~ 139 (302)
T 3b9q_A 102 VIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTF 139 (302)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCS
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeeccc
Confidence 8999999999999999999987531 22444454443
No 363
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=94.48 E-value=0.13 Score=49.97 Aligned_cols=84 Identities=13% Similarity=0.151 Sum_probs=54.2
Q ss_pred ceEEEeecccccCCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCC-------------CC
Q 020787 118 MSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGND-------------FS 184 (321)
Q Consensus 118 PcILFIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VIaaTNr-------------p~ 184 (321)
|.|+||||+|... ......|+..|..| ...+ +|.+||+ |.
T Consensus 296 ~~VliIDEa~~l~------------~~a~~aLlk~lEe~--------------~~~~-~il~tn~~~~~i~~~~~~~~~~ 348 (456)
T 2c9o_A 296 PGVLFVDEVHMLD------------IECFTYLHRALESS--------------IAPI-VIFASNRGNCVIRGTEDITSPH 348 (456)
T ss_dssp ECEEEEESGGGCB------------HHHHHHHHHHTTST--------------TCCE-EEEEECCSEEECBTTSSCEEET
T ss_pred ceEEEEechhhcC------------HHHHHHHHHHhhcc--------------CCCE-EEEecCCccccccccccccccc
Confidence 6799999999973 12344566666532 2234 4445544 66
Q ss_pred CccccCCCCCCCcceec-CCCHHHHHHHHHHHhhcC--CCCHHHHHHhh
Q 020787 185 TIYAPLIRDGRMEKFYW-QPNLEDILNIVHRMYEKD--GITKDEVGSIV 230 (321)
Q Consensus 185 ~LDpALlRpGRfDr~i~-~Pd~~~R~~Il~~~~~~~--~l~~~dl~~L~ 230 (321)
.|+|.|+- |+-.+.+ .|+.++..+||+...+.. .++.+.+..++
T Consensus 349 ~l~~~i~s--R~~~~~~~~~~~~e~~~iL~~~~~~~~~~~~~~~~~~i~ 395 (456)
T 2c9o_A 349 GIPLDLLD--RVMIIRTMLYTPQEMKQIIKIRAQTEGINISEEALNHLG 395 (456)
T ss_dssp TCCHHHHT--TEEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHH
T ss_pred cCChhHHh--hcceeeCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 77777776 6665433 379999999998776533 45666655555
No 364
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=94.47 E-value=0.015 Score=48.84 Aligned_cols=23 Identities=22% Similarity=0.245 Sum_probs=20.3
Q ss_pred HhccccCCCCcHHHHHHHHHHHc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM 77 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~ 77 (321)
.++|.||+|+|||+|.++++...
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 46889999999999999999863
No 365
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=94.47 E-value=0.0074 Score=55.12 Aligned_cols=27 Identities=19% Similarity=0.260 Sum_probs=24.6
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCce
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEP 81 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~ 81 (321)
++||.|+||||||+.++.++.++|++.
T Consensus 3 ~i~ltG~~~sGK~tv~~~l~~~~g~~~ 29 (241)
T 1dek_A 3 LIFLSGVKRSGKDTTADFIMSNYSAVK 29 (241)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHSCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCeE
Confidence 679999999999999999999999764
No 366
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=94.46 E-value=0.011 Score=57.21 Aligned_cols=24 Identities=21% Similarity=0.166 Sum_probs=21.8
Q ss_pred HhccccCCCCcHHHHHHHHHHHcC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMG 78 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g 78 (321)
+++|.||+|||||+|.++++.-..
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL~~ 79 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLLER 79 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEEcCCCchHHHHHHHHhcCCC
Confidence 899999999999999999997553
No 367
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=94.43 E-value=0.033 Score=58.30 Aligned_cols=23 Identities=22% Similarity=0.225 Sum_probs=19.2
Q ss_pred HhccccCCCCcHHHHHHHHHHHc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM 77 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~ 77 (321)
.+++.||+|||||+++.+++.+.
T Consensus 111 ~vii~gpTGSGKTtllp~ll~~~ 133 (773)
T 2xau_A 111 IMVFVGETGSGKTTQIPQFVLFD 133 (773)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 68899999999999877776553
No 368
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=94.40 E-value=0.03 Score=55.83 Aligned_cols=21 Identities=19% Similarity=0.109 Sum_probs=18.9
Q ss_pred HhccccCCCCcHHHHHHHHHH
Q 020787 55 SLCIWGGKGQGKSFQTELIFQ 75 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~ 75 (321)
+.+++||||||||++....+.
T Consensus 163 v~~I~G~aGsGKTt~I~~~~~ 183 (446)
T 3vkw_A 163 VVLVDGVPGCGKTKEILSRVN 183 (446)
T ss_dssp EEEEEECTTSCHHHHHHHHCC
T ss_pred EEEEEcCCCCCHHHHHHHHhc
Confidence 789999999999999988765
No 369
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=94.38 E-value=0.044 Score=53.44 Aligned_cols=27 Identities=11% Similarity=0.238 Sum_probs=23.3
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCce
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEP 81 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~ 81 (321)
.+.|.|.||+|||++++.+|+.++..+
T Consensus 41 ~IvlvGlpGsGKSTia~~La~~l~~~~ 67 (469)
T 1bif_A 41 LIVMVGLPARGKTYISKKLTRYLNFIG 67 (469)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhccC
Confidence 578899999999999999999876433
No 370
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=94.37 E-value=0.016 Score=52.24 Aligned_cols=29 Identities=24% Similarity=0.350 Sum_probs=24.0
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCC----ceEE
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGI----EPVI 83 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~----~~i~ 83 (321)
.+.|.|++|||||++++.+++.++. +.+.
T Consensus 23 ~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~ 55 (223)
T 3ld9_A 23 FITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVV 55 (223)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhccCceeeE
Confidence 4567899999999999999998665 5555
No 371
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=94.35 E-value=0.049 Score=47.86 Aligned_cols=28 Identities=14% Similarity=0.376 Sum_probs=22.6
Q ss_pred cccCCCCcHHHHHHHHHHHc--CCceEEee
Q 020787 58 IWGGKGQGKSFQTELIFQAM--GIEPVIMS 85 (321)
Q Consensus 58 L~GPPGcGKTllaravA~e~--g~~~i~vs 85 (321)
|-|+.|||||++++.+++.+ |.+.+...
T Consensus 7 ~EG~dGsGKsTq~~~L~~~L~~~~~v~~~~ 36 (205)
T 4hlc_A 7 FEGPEGSGKTTVINEVYHRLVKDYDVIMTR 36 (205)
T ss_dssp EECCTTSCHHHHHHHHHHHHTTTSCEEEEE
T ss_pred EECCCCCcHHHHHHHHHHHHHCCCCEEEee
Confidence 56999999999999999988 44555544
No 372
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=94.35 E-value=0.024 Score=57.47 Aligned_cols=35 Identities=14% Similarity=0.135 Sum_probs=27.4
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCC----ceEEeecccc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGI----EPVIMSAGEL 89 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~----~~i~vs~~eL 89 (321)
+++|.||+|||||++++++|+.++. .+..+.+-++
T Consensus 371 iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 371 TVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIV 409 (552)
T ss_dssp EEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHH
T ss_pred EEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHH
Confidence 6899999999999999999999863 2333555444
No 373
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=94.35 E-value=0.015 Score=48.87 Aligned_cols=23 Identities=22% Similarity=0.245 Sum_probs=20.9
Q ss_pred HhccccCCCCcHHHHHHHHHHHc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM 77 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~ 77 (321)
.++|.||+|+|||+|++.++...
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 67899999999999999999864
No 374
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=94.34 E-value=0.009 Score=55.59 Aligned_cols=24 Identities=25% Similarity=0.396 Sum_probs=21.9
Q ss_pred HhccccCCCCcHHHHHHHHHHHcC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMG 78 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g 78 (321)
+++|.||+|||||+|.++++....
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl~~ 89 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGELE 89 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Confidence 899999999999999999987653
No 375
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=94.33 E-value=0.014 Score=53.39 Aligned_cols=23 Identities=26% Similarity=0.482 Sum_probs=20.7
Q ss_pred HhccccCCCCcHHHHHHHHHHHc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM 77 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~ 77 (321)
.++|.||+|+|||++.+++++..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 36899999999999999999865
No 376
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=94.32 E-value=0.0071 Score=52.04 Aligned_cols=37 Identities=19% Similarity=0.048 Sum_probs=25.0
Q ss_pred hHhccccCCCCcHHHHHHHHHHHcCC-----ceEEeeccccc
Q 020787 54 ASLCIWGGKGQGKSFQTELIFQAMGI-----EPVIMSAGELE 90 (321)
Q Consensus 54 ~iLgL~GPPGcGKTllaravA~e~g~-----~~i~vs~~eL~ 90 (321)
.+++|.||+|||||+++++++..+.. -.|.+.+.++.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~ 44 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDF 44 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccc
Confidence 36789999999999999999988643 34555555543
No 377
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=94.29 E-value=0.014 Score=59.22 Aligned_cols=23 Identities=26% Similarity=0.329 Sum_probs=18.5
Q ss_pred HhccccCCCCcHHHHHHHHHHHc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM 77 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~ 77 (321)
..+|+||||||||+.+..++..+
T Consensus 197 ~~li~GppGTGKT~~~~~~i~~l 219 (624)
T 2gk6_A 197 LSLIQGPPGTGKTVTSATIVYHL 219 (624)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEECCCCCCHHHHHHHHHHHH
Confidence 56899999999999876666543
No 378
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=94.24 E-value=0.055 Score=54.89 Aligned_cols=24 Identities=21% Similarity=0.232 Sum_probs=20.8
Q ss_pred HhccccCCCCcHHHH-HHHHHHHcC
Q 020787 55 SLCIWGGKGQGKSFQ-TELIFQAMG 78 (321)
Q Consensus 55 iLgL~GPPGcGKTll-aravA~e~g 78 (321)
..||.||+|||||.| ...+++..+
T Consensus 164 R~~I~g~~g~GKT~Lal~~I~~q~~ 188 (510)
T 2ck3_A 164 RELIIGDRQTGKTSIAIDTIINQKR 188 (510)
T ss_dssp BCEEEESTTSSHHHHHHHHHHHTHH
T ss_pred EEEEecCCCCCchHHHHHHHHHHHh
Confidence 789999999999999 567777766
No 379
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=94.22 E-value=0.087 Score=47.09 Aligned_cols=21 Identities=14% Similarity=0.175 Sum_probs=18.8
Q ss_pred hccccCCCCcHHHHHHHHHHH
Q 020787 56 LCIWGGKGQGKSFQTELIFQA 76 (321)
Q Consensus 56 LgL~GPPGcGKTllaravA~e 76 (321)
++|.|+||||||+|..++.+.
T Consensus 6 i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 6 VALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEECSSSSHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 578999999999999999764
No 380
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=94.21 E-value=0.017 Score=58.62 Aligned_cols=31 Identities=29% Similarity=0.482 Sum_probs=24.5
Q ss_pred HhccccCCCCcHHHHHHHHHHH---cCCceEEee
Q 020787 55 SLCIWGGKGQGKSFQTELIFQA---MGIEPVIMS 85 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e---~g~~~i~vs 85 (321)
.++|.||||||||+++.+++.. .|..++.+.
T Consensus 206 ~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~A 239 (574)
T 3e1s_A 206 LVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCA 239 (574)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEec
Confidence 6889999999999999998874 455555543
No 381
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=94.17 E-value=0.11 Score=51.58 Aligned_cols=73 Identities=10% Similarity=0.052 Sum_probs=44.7
Q ss_pred HhccccCCCCcHHHHHHHHHHHc-----CCceEEeecc---------------ccccccCCCcHHH-HHHHH---HHHHh
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM-----GIEPVIMSAG---------------ELESERAGEPGKL-IRERY---RTASQ 110 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~-----g~~~i~vs~~---------------eL~s~~~GEser~-IR~~F---~~A~~ 110 (321)
..||.||||||||.|+..+|+.. ++..|.+--+ +++..-.-+|.-. ++-.| ..| +
T Consensus 177 R~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~~V~~lIGER~~EV~d~~~~~~G~VV~atadep~~~r~~~a~~altiA-E 255 (427)
T 3l0o_A 177 RGMIVAPPKAGKTTILKEIANGIAENHPDTIRIILLIDERPEEVTDIRESTNAIVIAAPFDMPPDKQVKVAELTLEMA-K 255 (427)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHHHHCTTSEEEEEECSCCHHHHSSSSSSCCSEEEECCTTSCHHHHHHHHHHHHHHH-H
T ss_pred eEEEecCCCCChhHHHHHHHHHHhhcCCCeEEEEEEeccCcchHHHHHHHhCCeEEEECCCCCHHHHHHHHHHHHHHH-H
Confidence 77999999999999999888753 4444433222 2333333344432 22222 122 2
Q ss_pred hhhhcCCceEEEeecccc
Q 020787 111 VVQNQGKMSCLMINDIDA 128 (321)
Q Consensus 111 ~~~~~gaPcILFIDEIDA 128 (321)
..+.+|+-.+|++|+|-.
T Consensus 256 yfrd~G~dVLil~DslTR 273 (427)
T 3l0o_A 256 RLVEFNYDVVILLDSLTR 273 (427)
T ss_dssp HHHHTTCEEEEEEECHHH
T ss_pred HHHHcCCCEEEecccchH
Confidence 223478999999999875
No 382
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=94.09 E-value=0.015 Score=57.52 Aligned_cols=23 Identities=22% Similarity=0.322 Sum_probs=21.2
Q ss_pred HhccccCCCCcHHHHHHHHHHHc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM 77 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~ 77 (321)
+++|.||+|||||+|+|+++.-.
T Consensus 140 ~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 140 RVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp CEEEEESTTSSHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCcc
Confidence 88999999999999999999754
No 383
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.01 E-value=0.019 Score=49.58 Aligned_cols=24 Identities=21% Similarity=0.243 Sum_probs=21.0
Q ss_pred hHhccccCCCCcHHHHHHHHHHHc
Q 020787 54 ASLCIWGGKGQGKSFQTELIFQAM 77 (321)
Q Consensus 54 ~iLgL~GPPGcGKTllaravA~e~ 77 (321)
.+++|.||+|+|||++++.++..+
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhc
Confidence 367899999999999999998764
No 384
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=93.99 E-value=0.072 Score=47.36 Aligned_cols=23 Identities=30% Similarity=0.371 Sum_probs=19.8
Q ss_pred HhccccCCCCcHHHHHHHHHHHc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM 77 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~ 77 (321)
.++|.|+||+|||++..++...-
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 57899999999999999987543
No 385
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=93.93 E-value=0.017 Score=57.18 Aligned_cols=23 Identities=17% Similarity=0.299 Sum_probs=21.1
Q ss_pred HhccccCCCCcHHHHHHHHHHHc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM 77 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~ 77 (321)
+++|.||||||||++++++|...
T Consensus 283 i~~i~G~~GsGKSTLl~~l~g~~ 305 (525)
T 1tf7_A 283 IILATGATGTGKTLLVSRFVENA 305 (525)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 88999999999999999998754
No 386
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=93.82 E-value=0.024 Score=49.90 Aligned_cols=34 Identities=18% Similarity=0.331 Sum_probs=28.5
Q ss_pred hccccCCCCcHHHHHHHHHHHcCCceEEeeccccc
Q 020787 56 LCIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELE 90 (321)
Q Consensus 56 LgL~GPPGcGKTllaravA~e~g~~~i~vs~~eL~ 90 (321)
.+++||+|+|||.+|+.+|.+ +.+.+.+..+.-.
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~~~ 35 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQIL 35 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCCC-
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCCCC
Confidence 578999999999999999988 8888887776543
No 387
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=93.78 E-value=0.12 Score=50.68 Aligned_cols=32 Identities=19% Similarity=0.227 Sum_probs=24.6
Q ss_pred HhccccCCCCcHHHHHHHHHHHc----CCceEEeec
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM----GIEPVIMSA 86 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~----g~~~i~vs~ 86 (321)
++.+.|++|+|||+++-.+|..+ |-.+..+++
T Consensus 102 vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~ 137 (433)
T 2xxa_A 102 VVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSA 137 (433)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEec
Confidence 56677999999999998888554 666666555
No 388
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=93.77 E-value=0.019 Score=57.67 Aligned_cols=31 Identities=23% Similarity=0.243 Sum_probs=26.5
Q ss_pred cccchhhhhHhccccCCCCcHHHHHHHHHHHcCC
Q 020787 46 YYIAPVFMASLCIWGGKGQGKSFQTELIFQAMGI 79 (321)
Q Consensus 46 ~~~~p~f~~iLgL~GPPGcGKTllaravA~e~g~ 79 (321)
+-|++ ++++|.||+|||||+|.++++.-...
T Consensus 25 l~i~~---e~~~liG~nGsGKSTLl~~l~Gl~~p 55 (483)
T 3euj_A 25 FDFDE---LVTTLSGGNGAGKSTTMAGFVTALIP 55 (483)
T ss_dssp EECCS---SEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred EEEcc---ceEEEECCCCCcHHHHHHHHhcCCCC
Confidence 44666 79999999999999999999987644
No 389
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=93.72 E-value=0.018 Score=50.41 Aligned_cols=22 Identities=23% Similarity=0.225 Sum_probs=20.6
Q ss_pred HhccccCCCCcHHHHHHHHHHH
Q 020787 55 SLCIWGGKGQGKSFQTELIFQA 76 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e 76 (321)
+++|-||.|||||+++++++..
T Consensus 22 ~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 22 TVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp EEEEECSTTSCHHHHHHTTGGG
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 6789999999999999999987
No 390
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=93.67 E-value=0.024 Score=49.24 Aligned_cols=31 Identities=23% Similarity=0.114 Sum_probs=24.0
Q ss_pred HhccccCCCCcHHHHHHHHHHHc---CCceEEee
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM---GIEPVIMS 85 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~---g~~~i~vs 85 (321)
+++|.||+|+|||++++.++..+ |..+-.++
T Consensus 6 ~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik 39 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK 39 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEE
Confidence 57899999999999999998764 44444443
No 391
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=93.65 E-value=0.027 Score=46.82 Aligned_cols=23 Identities=30% Similarity=0.359 Sum_probs=20.7
Q ss_pred HhccccCCCCcHHHHHHHHHHHc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM 77 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~ 77 (321)
+-+|+||.|+|||.+.+|++--+
T Consensus 25 ~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 67899999999999999998655
No 392
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=93.64 E-value=0.023 Score=54.73 Aligned_cols=36 Identities=25% Similarity=0.305 Sum_probs=27.0
Q ss_pred HhccccCCCCcHHHHHHHHHHHcC--CceEEeeccccc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMG--IEPVIMSAGELE 90 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g--~~~i~vs~~eL~ 90 (321)
+++|.||+|||||++++.+|..+. ---|.+.+.++.
T Consensus 159 vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~ 196 (359)
T 2og2_A 159 VIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTF 196 (359)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCS
T ss_pred EEEEEcCCCChHHHHHHHHHhhccccCCEEEEeccccc
Confidence 899999999999999999998753 123444555544
No 393
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=93.62 E-value=0.25 Score=46.12 Aligned_cols=22 Identities=32% Similarity=0.468 Sum_probs=20.0
Q ss_pred HhccccCCCCcHHHHHHHHHHH
Q 020787 55 SLCIWGGKGQGKSFQTELIFQA 76 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e 76 (321)
.+.|.|++|+|||++.+++...
T Consensus 36 ~I~vvG~~~sGKSSLln~l~g~ 57 (360)
T 3t34_A 36 AIAVVGGQSSGKSSVLESIVGK 57 (360)
T ss_dssp EEEEECBTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 6788999999999999999873
No 394
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=93.57 E-value=0.16 Score=51.77 Aligned_cols=101 Identities=17% Similarity=0.173 Sum_probs=0.0
Q ss_pred HhccccCCCCcHHHHH---------------------HHHHHHcCCc---------eEEeecccc---------------
Q 020787 55 SLCIWGGKGQGKSFQT---------------------ELIFQAMGIE---------PVIMSAGEL--------------- 89 (321)
Q Consensus 55 iLgL~GPPGcGKTlla---------------------ravA~e~g~~---------~i~vs~~eL--------------- 89 (321)
+++|-||+|||||+|+ +.++.-.... .+.+.+.++
T Consensus 46 ~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~~~~~~~~ig~v~q~~ 125 (670)
T 3ux8_A 46 LVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTTSRNPRSTVGTVTEIY 125 (670)
T ss_dssp EEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC-----CCBHHHHTTCC
T ss_pred EEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchhhccchhceeeeechh
Q ss_pred ----------------------------------------------------------------------ccccCCCcHH
Q 020787 90 ----------------------------------------------------------------------ESERAGEPGK 99 (321)
Q Consensus 90 ----------------------------------------------------------------------~s~~~GEser 99 (321)
.++++++=--
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSG 205 (670)
T 3ux8_A 126 DYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQNVGLDYLTLSRSAGTLSG 205 (670)
T ss_dssp -------------------------CC--------------------------CHHHHHHHHHTTCTTCCTTCBGGGSCH
T ss_pred hhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHHHHcCCchhhhcCCcccCCH
Q ss_pred HHHHHHHHHHhhhhhcCCce--EEEeecccccCCCCCCCccchhhHHHHHHHHhhcCCCCccccCccccccCCCCCccEE
Q 020787 100 LIRERYRTASQVVQNQGKMS--CLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPII 177 (321)
Q Consensus 100 ~IR~~F~~A~~~~~~~gaPc--ILFIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~~~~vql~g~~~~~~~~~~V~VI 177 (321)
=-|++-.-|+..+. .|. +|++||-=++. +...+.....++..+. ..+.-||
T Consensus 206 Ge~QRv~iArAL~~---~p~~~lLlLDEPtsgL--------D~~~~~~l~~~l~~l~----------------~~g~tvi 258 (670)
T 3ux8_A 206 GEAQRIRLATQIGS---RLTGVLYVLDEPSIGL--------HQRDNDRLIATLKSMR----------------DLGNTLI 258 (670)
T ss_dssp HHHHHHHHHHHHHT---CCCSCEEEEECTTTTC--------CGGGHHHHHHHHHHHH----------------HTTCEEE
T ss_pred HHHHHHHHHHHHhh---CCCCCEEEEECCccCC--------CHHHHHHHHHHHHHHH----------------HcCCEEE
Q ss_pred EeeCC
Q 020787 178 FTGND 182 (321)
Q Consensus 178 aaTNr 182 (321)
+.|.+
T Consensus 259 ~vtHd 263 (670)
T 3ux8_A 259 VVEHD 263 (670)
T ss_dssp EECCC
T ss_pred EEeCC
No 395
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=93.37 E-value=0.014 Score=54.99 Aligned_cols=25 Identities=36% Similarity=0.555 Sum_probs=22.4
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGI 79 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~ 79 (321)
+++|.||+|||||+|+++++.-...
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl~~p 106 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRFYDI 106 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTSSCC
T ss_pred EEEEECCCCchHHHHHHHHHcCCCC
Confidence 8999999999999999999876543
No 396
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=93.26 E-value=0.23 Score=48.17 Aligned_cols=22 Identities=27% Similarity=0.179 Sum_probs=19.4
Q ss_pred HhccccCCCCcHHHHHHHHHHH
Q 020787 55 SLCIWGGKGQGKSFQTELIFQA 76 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e 76 (321)
.+.|.|+||+|||+|..++...
T Consensus 25 ~V~lvG~~nvGKSTL~n~l~~~ 46 (456)
T 4dcu_A 25 VVAIVGRPNVGKSTIFNRIAGE 46 (456)
T ss_dssp EEEEECSSSSSHHHHHHHHEEE
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 6889999999999999988653
No 397
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=93.26 E-value=0.035 Score=43.79 Aligned_cols=22 Identities=23% Similarity=0.235 Sum_probs=19.3
Q ss_pred hccccCCCCcHHHHHHHHHHHc
Q 020787 56 LCIWGGKGQGKSFQTELIFQAM 77 (321)
Q Consensus 56 LgL~GPPGcGKTllaravA~e~ 77 (321)
+++.|++|+|||++++.++..-
T Consensus 4 i~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 4 VVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 5788999999999999998754
No 398
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=93.17 E-value=0.037 Score=43.53 Aligned_cols=22 Identities=27% Similarity=0.354 Sum_probs=19.0
Q ss_pred hccccCCCCcHHHHHHHHHHHc
Q 020787 56 LCIWGGKGQGKSFQTELIFQAM 77 (321)
Q Consensus 56 LgL~GPPGcGKTllaravA~e~ 77 (321)
+++.|+||+|||+|+.++....
T Consensus 6 i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 6 VVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 5789999999999999988653
No 399
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=93.17 E-value=0.034 Score=45.19 Aligned_cols=21 Identities=19% Similarity=0.234 Sum_probs=18.8
Q ss_pred hccccCCCCcHHHHHHHHHHH
Q 020787 56 LCIWGGKGQGKSFQTELIFQA 76 (321)
Q Consensus 56 LgL~GPPGcGKTllaravA~e 76 (321)
++|.|+||+|||+|.+++++.
T Consensus 6 v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 6 IALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 678999999999999999863
No 400
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=93.16 E-value=0.028 Score=46.55 Aligned_cols=20 Identities=30% Similarity=0.511 Sum_probs=18.2
Q ss_pred hccccCCCCcHHHHHHHHHH
Q 020787 56 LCIWGGKGQGKSFQTELIFQ 75 (321)
Q Consensus 56 LgL~GPPGcGKTllaravA~ 75 (321)
+.|.|+||||||+|++.++.
T Consensus 5 v~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 5 LMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEESCTTSSHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 57899999999999999886
No 401
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=93.15 E-value=0.038 Score=43.80 Aligned_cols=21 Identities=19% Similarity=0.252 Sum_probs=18.8
Q ss_pred hccccCCCCcHHHHHHHHHHH
Q 020787 56 LCIWGGKGQGKSFQTELIFQA 76 (321)
Q Consensus 56 LgL~GPPGcGKTllaravA~e 76 (321)
+++.|+||+|||+++.+++..
T Consensus 8 i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 8 MVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEECSTTSSHHHHHHHHHHC
T ss_pred EEEECcCCCCHHHHHHHHHcC
Confidence 578899999999999999874
No 402
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=93.15 E-value=0.035 Score=43.50 Aligned_cols=22 Identities=36% Similarity=0.407 Sum_probs=19.4
Q ss_pred hccccCCCCcHHHHHHHHHHHc
Q 020787 56 LCIWGGKGQGKSFQTELIFQAM 77 (321)
Q Consensus 56 LgL~GPPGcGKTllaravA~e~ 77 (321)
+++.|++|+|||+++.+++...
T Consensus 6 i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 6 LVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHHhCc
Confidence 5789999999999999998753
No 403
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=93.13 E-value=0.028 Score=56.48 Aligned_cols=24 Identities=21% Similarity=0.266 Sum_probs=22.1
Q ss_pred HhccccCCCCcHHHHHHHHHHHcC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMG 78 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g 78 (321)
+++|.||.|||||+|+++++....
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl~~ 337 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGVEE 337 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 899999999999999999998653
No 404
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=93.12 E-value=0.03 Score=56.64 Aligned_cols=36 Identities=19% Similarity=0.313 Sum_probs=26.6
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCC--ceEEeeccccc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGI--EPVIMSAGELE 90 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~--~~i~vs~~eL~ 90 (321)
+++|.||+|||||++++.+|..+.. --|.+.+.+..
T Consensus 295 VI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~ 332 (503)
T 2yhs_A 295 VILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTF 332 (503)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTT
T ss_pred EEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCccc
Confidence 7899999999999999999986532 23444444443
No 405
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.09 E-value=0.037 Score=46.67 Aligned_cols=23 Identities=26% Similarity=0.289 Sum_probs=20.5
Q ss_pred HhccccCCCCcHHHHHHHHHHHc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM 77 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~ 77 (321)
.++|.||||+|||+++.+++...
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 46899999999999999998865
No 406
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=93.03 E-value=0.025 Score=57.03 Aligned_cols=24 Identities=21% Similarity=0.368 Sum_probs=22.0
Q ss_pred HhccccCCCCcHHHHHHHHHHHcC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMG 78 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g 78 (321)
+++|.||+|||||+|+++++....
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~~ 319 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEIT 319 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 899999999999999999998653
No 407
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=93.02 E-value=0.13 Score=45.73 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=20.5
Q ss_pred HhccccCCCCcHHHHHHHHHHHc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM 77 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~ 77 (321)
.++|.|++|+|||+++.++..+-
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998765
No 408
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=93.01 E-value=0.032 Score=50.55 Aligned_cols=24 Identities=25% Similarity=0.408 Sum_probs=20.9
Q ss_pred HhccccCCCCcHHHHHHHHHHHcC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMG 78 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g 78 (321)
.+.|.||||+|||++++.++..+.
T Consensus 29 ~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 29 FIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp EEEEEESTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 457899999999999999998764
No 409
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=92.99 E-value=0.013 Score=49.17 Aligned_cols=23 Identities=17% Similarity=0.187 Sum_probs=19.7
Q ss_pred HhccccCCCCcHHHHHHHHHHHc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM 77 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~ 77 (321)
.++|.||||+|||+|.++++...
T Consensus 28 ~v~lvG~~g~GKSTLl~~l~g~~ 50 (210)
T 1pui_A 28 EVAFAGRSNAGKSSALNTLTNQK 50 (210)
T ss_dssp EEEEEECTTSSHHHHHTTTCCC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999887543
No 410
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=92.98 E-value=0.042 Score=43.27 Aligned_cols=22 Identities=27% Similarity=0.250 Sum_probs=19.1
Q ss_pred hccccCCCCcHHHHHHHHHHHc
Q 020787 56 LCIWGGKGQGKSFQTELIFQAM 77 (321)
Q Consensus 56 LgL~GPPGcGKTllaravA~e~ 77 (321)
+++.|++|+|||+|+.+++..-
T Consensus 7 i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 7 VIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHhCc
Confidence 5788999999999999998653
No 411
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.92 E-value=0.043 Score=43.44 Aligned_cols=22 Identities=23% Similarity=0.166 Sum_probs=19.0
Q ss_pred hccccCCCCcHHHHHHHHHHHc
Q 020787 56 LCIWGGKGQGKSFQTELIFQAM 77 (321)
Q Consensus 56 LgL~GPPGcGKTllaravA~e~ 77 (321)
+++.|++|+|||+++.++....
T Consensus 6 i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 6 LVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 5788999999999999988654
No 412
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=92.92 E-value=0.24 Score=41.21 Aligned_cols=21 Identities=19% Similarity=0.246 Sum_probs=19.2
Q ss_pred HhccccCCCCcHHHHHHHHHH
Q 020787 55 SLCIWGGKGQGKSFQTELIFQ 75 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~ 75 (321)
.++|.|+||+|||++++.++.
T Consensus 25 ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 25 KLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 468999999999999999987
No 413
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=92.90 E-value=0.042 Score=45.22 Aligned_cols=23 Identities=26% Similarity=0.289 Sum_probs=20.4
Q ss_pred HhccccCCCCcHHHHHHHHHHHc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM 77 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~ 77 (321)
.++|.|++|+|||+++.+++...
T Consensus 50 ~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 50 SIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998754
No 414
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=92.85 E-value=0.032 Score=56.01 Aligned_cols=23 Identities=26% Similarity=0.411 Sum_probs=21.4
Q ss_pred HhccccCCCCcHHHHHHHHHHHc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM 77 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~ 77 (321)
+++|.||+|||||+|.++++...
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 89999999999999999999864
No 415
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=92.85 E-value=0.035 Score=45.32 Aligned_cols=22 Identities=18% Similarity=0.226 Sum_probs=19.6
Q ss_pred HhccccCCCCcHHHHHHHHHHH
Q 020787 55 SLCIWGGKGQGKSFQTELIFQA 76 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e 76 (321)
.++|.|++|+|||+|.++++..
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4689999999999999999874
No 416
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=92.85 E-value=0.025 Score=42.83 Aligned_cols=51 Identities=10% Similarity=0.079 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhhcCCCC-HHHHHHhhhCCCCCcchhhHHHHHhHhHHHHHHHHHhc
Q 020787 206 EDILNIVHRMYEKDGIT-KDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDI 260 (321)
Q Consensus 206 ~~R~~Il~~~~~~~~l~-~~dl~~L~d~f~gq~idf~gAlra~~~d~~~~~~i~~~ 260 (321)
++|.+||+.++++.+++ ..|+..|+..++ +|+||..+.+|.++....+.+.
T Consensus 1 ~~R~~Il~~~l~~~~~~~~vdl~~lA~~t~----G~SGADi~~l~~eAa~~ai~~~ 52 (82)
T 2dzn_B 1 MERRLIFGTIASKMSLAPEADLDSLIIRND----SLSGAVIAAIMQEAGLRAVRKN 52 (82)
T ss_dssp -------------CEECTTCCSTTTTTSSC----CCCHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHcCCCCCCcCCHHHHHHHcC----CCCHHHHHHHHHHHHHHHHHhc
Confidence 47999999999887754 457777775444 5889999999999988887763
No 417
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=92.83 E-value=0.034 Score=58.63 Aligned_cols=23 Identities=26% Similarity=0.329 Sum_probs=18.5
Q ss_pred HhccccCCCCcHHHHHHHHHHHc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM 77 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~ 77 (321)
..+|+||||||||+++..++..+
T Consensus 373 ~~lI~GppGTGKT~ti~~~i~~l 395 (800)
T 2wjy_A 373 LSLIQGPPGTGKTVTSATIVYHL 395 (800)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHHHHH
Confidence 56899999999998876666543
No 418
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=92.83 E-value=0.044 Score=44.00 Aligned_cols=23 Identities=22% Similarity=0.276 Sum_probs=19.6
Q ss_pred HhccccCCCCcHHHHHHHHHHHc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM 77 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~ 77 (321)
.+++.|++|+|||+|+..+....
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 36788999999999999987653
No 419
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=92.83 E-value=0.027 Score=51.93 Aligned_cols=24 Identities=25% Similarity=0.152 Sum_probs=21.4
Q ss_pred HhccccCCCCcHHHHHHHHHHHcC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMG 78 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g 78 (321)
+++|.||+|||||+|.++++....
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~~ 194 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGLK 194 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTCC
T ss_pred eEEEECCCCCcHHHHHHHhccccc
Confidence 789999999999999999987554
No 420
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=92.81 E-value=0.045 Score=43.46 Aligned_cols=22 Identities=27% Similarity=0.435 Sum_probs=19.5
Q ss_pred hccccCCCCcHHHHHHHHHHHc
Q 020787 56 LCIWGGKGQGKSFQTELIFQAM 77 (321)
Q Consensus 56 LgL~GPPGcGKTllaravA~e~ 77 (321)
+++.|+||+|||++++++....
T Consensus 9 i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 9 VCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHHcCC
Confidence 5788999999999999998764
No 421
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=92.77 E-value=0.035 Score=51.33 Aligned_cols=23 Identities=22% Similarity=0.108 Sum_probs=20.6
Q ss_pred HhccccCCCCcHHHHHHHHHHHcC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMG 78 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g 78 (321)
+++|-||+|+|||+|.++++ ...
T Consensus 167 i~~l~G~sG~GKSTLln~l~-~~~ 189 (302)
T 2yv5_A 167 ICILAGPSGVGKSSILSRLT-GEE 189 (302)
T ss_dssp EEEEECSTTSSHHHHHHHHH-SCC
T ss_pred EEEEECCCCCCHHHHHHHHH-Hhh
Confidence 78999999999999999998 543
No 422
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=92.76 E-value=0.042 Score=43.92 Aligned_cols=21 Identities=24% Similarity=0.384 Sum_probs=18.4
Q ss_pred hccccCCCCcHHHHHHHHHHH
Q 020787 56 LCIWGGKGQGKSFQTELIFQA 76 (321)
Q Consensus 56 LgL~GPPGcGKTllaravA~e 76 (321)
++|.|+||+|||+|++++...
T Consensus 7 i~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 7 VVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEECCTTSSHHHHHHHHHCC
T ss_pred EEEECCCCccHHHHHHHHhcC
Confidence 578999999999999998754
No 423
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=92.76 E-value=0.31 Score=41.26 Aligned_cols=47 Identities=13% Similarity=0.083 Sum_probs=30.2
Q ss_pred HhccccCCCCcHHHHHHHHHHHc------CCceEEeeccccccccCCCcHHHHHHHHHHHHhh
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM------GIEPVIMSAGELESERAGEPGKLIRERYRTASQV 111 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~------g~~~i~vs~~eL~s~~~GEser~IR~~F~~A~~~ 111 (321)
-+++.+|+|+|||+.+-..+-+. +...+.+... -.++.+.+++..+.
T Consensus 53 ~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt----------~~L~~q~~~~~~~~ 105 (220)
T 1t6n_A 53 DVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHT----------RELAFQISKEYERF 105 (220)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSC----------HHHHHHHHHHHHHH
T ss_pred CEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCC----------HHHHHHHHHHHHHH
Confidence 47889999999999877766554 2244444433 23445566666554
No 424
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=92.76 E-value=0.045 Score=43.97 Aligned_cols=21 Identities=24% Similarity=0.292 Sum_probs=18.7
Q ss_pred hccccCCCCcHHHHHHHHHHH
Q 020787 56 LCIWGGKGQGKSFQTELIFQA 76 (321)
Q Consensus 56 LgL~GPPGcGKTllaravA~e 76 (321)
+++.|+||+|||+++..+...
T Consensus 10 i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 10 VILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 578999999999999999864
No 425
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=92.71 E-value=0.15 Score=45.85 Aligned_cols=20 Identities=15% Similarity=0.142 Sum_probs=18.2
Q ss_pred hccccCCCCcHHHHHHHHHH
Q 020787 56 LCIWGGKGQGKSFQTELIFQ 75 (321)
Q Consensus 56 LgL~GPPGcGKTllaravA~ 75 (321)
++|.|+||||||+|..++..
T Consensus 8 I~lvG~~nvGKTsL~n~l~g 27 (258)
T 3a1s_A 8 VALAGCPNVGKTSLFNALTG 27 (258)
T ss_dssp EEEECCTTSSHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHC
Confidence 57889999999999999976
No 426
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=92.69 E-value=0.047 Score=43.43 Aligned_cols=21 Identities=14% Similarity=0.112 Sum_probs=18.9
Q ss_pred hccccCCCCcHHHHHHHHHHH
Q 020787 56 LCIWGGKGQGKSFQTELIFQA 76 (321)
Q Consensus 56 LgL~GPPGcGKTllaravA~e 76 (321)
+++.|+||+|||++++++...
T Consensus 9 i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 9 VVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEECCTTSCHHHHHHHHHHC
T ss_pred EEEECcCCCCHHHHHHHHHcC
Confidence 578899999999999999865
No 427
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=92.68 E-value=0.23 Score=43.59 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=20.1
Q ss_pred HhccccCCCCcHHHHHHHHHHHc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM 77 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~ 77 (321)
.++|.|+||+|||++..++...-
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998653
No 428
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=92.65 E-value=0.045 Score=43.45 Aligned_cols=21 Identities=24% Similarity=0.333 Sum_probs=18.5
Q ss_pred hccccCCCCcHHHHHHHHHHH
Q 020787 56 LCIWGGKGQGKSFQTELIFQA 76 (321)
Q Consensus 56 LgL~GPPGcGKTllaravA~e 76 (321)
+++.|+||+|||+++.++...
T Consensus 6 i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 6 ILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECcCCCCHHHHHHHHHhC
Confidence 578899999999999998854
No 429
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=92.65 E-value=0.049 Score=43.08 Aligned_cols=21 Identities=24% Similarity=0.267 Sum_probs=18.6
Q ss_pred hccccCCCCcHHHHHHHHHHH
Q 020787 56 LCIWGGKGQGKSFQTELIFQA 76 (321)
Q Consensus 56 LgL~GPPGcGKTllaravA~e 76 (321)
++|.|+||+|||+++.++...
T Consensus 9 i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 9 LVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 578899999999999999863
No 430
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=92.62 E-value=0.14 Score=46.75 Aligned_cols=21 Identities=24% Similarity=0.333 Sum_probs=18.8
Q ss_pred hccccCCCCcHHHHHHHHHHH
Q 020787 56 LCIWGGKGQGKSFQTELIFQA 76 (321)
Q Consensus 56 LgL~GPPGcGKTllaravA~e 76 (321)
+.|.|+||||||+|..++...
T Consensus 6 I~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 6 IALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp EEEECCTTSSHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHHCC
Confidence 578999999999999999864
No 431
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=92.57 E-value=0.054 Score=42.97 Aligned_cols=22 Identities=14% Similarity=0.028 Sum_probs=19.0
Q ss_pred hccccCCCCcHHHHHHHHHHHc
Q 020787 56 LCIWGGKGQGKSFQTELIFQAM 77 (321)
Q Consensus 56 LgL~GPPGcGKTllaravA~e~ 77 (321)
+++.|+||+|||+|+..+...-
T Consensus 3 i~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 4688999999999999998653
No 432
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=92.56 E-value=0.05 Score=44.01 Aligned_cols=22 Identities=18% Similarity=0.167 Sum_probs=19.4
Q ss_pred HhccccCCCCcHHHHHHHHHHH
Q 020787 55 SLCIWGGKGQGKSFQTELIFQA 76 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e 76 (321)
-++|.|+||+|||+|+.++...
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4678999999999999999864
No 433
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=92.54 E-value=0.052 Score=42.95 Aligned_cols=21 Identities=38% Similarity=0.458 Sum_probs=18.7
Q ss_pred hccccCCCCcHHHHHHHHHHH
Q 020787 56 LCIWGGKGQGKSFQTELIFQA 76 (321)
Q Consensus 56 LgL~GPPGcGKTllaravA~e 76 (321)
+++.|+||+|||+|++++...
T Consensus 6 i~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 6 LVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEECSTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 578899999999999999864
No 434
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=92.53 E-value=0.29 Score=44.22 Aligned_cols=31 Identities=16% Similarity=0.068 Sum_probs=23.7
Q ss_pred HhccccCCCCcHHHHHHHHHHH---cCCceEEee
Q 020787 55 SLCIWGGKGQGKSFQTELIFQA---MGIEPVIMS 85 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e---~g~~~i~vs 85 (321)
+..++||.|+|||+.+--.+.. .|...+.+.
T Consensus 30 l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k 63 (214)
T 2j9r_A 30 IEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFK 63 (214)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 6778999999999888666544 466777665
No 435
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=92.51 E-value=0.042 Score=43.54 Aligned_cols=21 Identities=24% Similarity=0.411 Sum_probs=18.5
Q ss_pred hccccCCCCcHHHHHHHHHHH
Q 020787 56 LCIWGGKGQGKSFQTELIFQA 76 (321)
Q Consensus 56 LgL~GPPGcGKTllaravA~e 76 (321)
+++.|+||+|||+++.++...
T Consensus 6 i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 6 VAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEECCTTSSHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 568899999999999999863
No 436
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=92.47 E-value=0.045 Score=44.05 Aligned_cols=21 Identities=24% Similarity=0.330 Sum_probs=18.3
Q ss_pred hccccCCCCcHHHHHHHHHHH
Q 020787 56 LCIWGGKGQGKSFQTELIFQA 76 (321)
Q Consensus 56 LgL~GPPGcGKTllaravA~e 76 (321)
++|.|+||+|||+|+.++...
T Consensus 9 i~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 9 IVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHGG
T ss_pred EEEECcCCCCHHHHHHHHHhC
Confidence 578899999999999998753
No 437
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=92.44 E-value=0.098 Score=45.45 Aligned_cols=30 Identities=30% Similarity=0.380 Sum_probs=24.3
Q ss_pred cccCCCCcHHHHHHHHHHHc---CCceEEeecc
Q 020787 58 IWGGKGQGKSFQTELIFQAM---GIEPVIMSAG 87 (321)
Q Consensus 58 L~GPPGcGKTllaravA~e~---g~~~i~vs~~ 87 (321)
|-|+.|||||++++++++.+ |.+++...-+
T Consensus 5 ~EG~DGsGKsTq~~~L~~~L~~~g~~v~~treP 37 (197)
T 3hjn_A 5 FEGIDGSGKSTQIQLLAQYLEKRGKKVILKREP 37 (197)
T ss_dssp EECSTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred EECCCCCCHHHHHHHHHHHHHHCCCcEEEEECC
Confidence 56999999999999999776 6777766544
No 438
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=92.41 E-value=0.053 Score=43.92 Aligned_cols=22 Identities=18% Similarity=0.151 Sum_probs=19.7
Q ss_pred HhccccCCCCcHHHHHHHHHHH
Q 020787 55 SLCIWGGKGQGKSFQTELIFQA 76 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e 76 (321)
-++|.|+||+|||+|+.++...
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3678999999999999999876
No 439
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=92.39 E-value=0.052 Score=47.16 Aligned_cols=25 Identities=28% Similarity=0.254 Sum_probs=22.3
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGI 79 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~ 79 (321)
+-+|+||.|+|||++..|+.--++.
T Consensus 25 ~~~I~G~NgsGKStil~ai~~~l~g 49 (203)
T 3qks_A 25 INLIIGQNGSGKSSLLDAILVGLYW 49 (203)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 6789999999999999999877765
No 440
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=92.32 E-value=0.054 Score=48.08 Aligned_cols=22 Identities=23% Similarity=0.486 Sum_probs=19.6
Q ss_pred hccccCCCCcHHHHHHHHHHHc
Q 020787 56 LCIWGGKGQGKSFQTELIFQAM 77 (321)
Q Consensus 56 LgL~GPPGcGKTllaravA~e~ 77 (321)
+.|-||+|||||++++.+++.+
T Consensus 6 i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 6 IVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp EEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 4578999999999999999876
No 441
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=92.31 E-value=0.3 Score=43.13 Aligned_cols=33 Identities=12% Similarity=0.382 Sum_probs=27.5
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeecc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAG 87 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~ 87 (321)
-+++.+|+|+|||+.+-+.+.+.+...+.+...
T Consensus 33 ~~lv~~~TGsGKT~~~~~~~~~~~~~~liv~P~ 65 (337)
T 2z0m_A 33 NVVVRAKTGSGKTAAYAIPILELGMKSLVVTPT 65 (337)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHTCCEEEECSS
T ss_pred CEEEEcCCCCcHHHHHHHHHHhhcCCEEEEeCC
Confidence 578999999999999888888888777777654
No 442
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=92.25 E-value=0.054 Score=43.36 Aligned_cols=22 Identities=18% Similarity=0.232 Sum_probs=18.9
Q ss_pred HhccccCCCCcHHHHHHHHHHH
Q 020787 55 SLCIWGGKGQGKSFQTELIFQA 76 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e 76 (321)
-++|.|++|+|||+|+.+++..
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3577899999999999999854
No 443
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=92.18 E-value=0.056 Score=43.06 Aligned_cols=20 Identities=25% Similarity=0.228 Sum_probs=17.5
Q ss_pred hccccCCCCcHHHHHHHHHH
Q 020787 56 LCIWGGKGQGKSFQTELIFQ 75 (321)
Q Consensus 56 LgL~GPPGcGKTllaravA~ 75 (321)
++|.|+||+|||+|+..+..
T Consensus 5 i~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 46889999999999999863
No 444
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=92.15 E-value=0.17 Score=45.58 Aligned_cols=21 Identities=19% Similarity=0.183 Sum_probs=18.7
Q ss_pred hccccCCCCcHHHHHHHHHHH
Q 020787 56 LCIWGGKGQGKSFQTELIFQA 76 (321)
Q Consensus 56 LgL~GPPGcGKTllaravA~e 76 (321)
+.|.|+||||||+|..++...
T Consensus 4 I~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 4 ALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp EEEEESTTSSHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHCC
Confidence 578899999999999999765
No 445
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=92.13 E-value=0.046 Score=52.75 Aligned_cols=24 Identities=21% Similarity=0.158 Sum_probs=21.4
Q ss_pred HhccccCCCCcHHHHHHHHHHHcC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMG 78 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g 78 (321)
+++|.||||+|||+|.++++....
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCccHHHHHHHHhcccc
Confidence 789999999999999999986544
No 446
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=92.11 E-value=0.27 Score=48.42 Aligned_cols=31 Identities=19% Similarity=0.331 Sum_probs=23.3
Q ss_pred HhccccCCCCcHHHHHHHHHHHc---CCceEEee
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM---GIEPVIMS 85 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~---g~~~i~vs 85 (321)
++++.||+|+|||+++..+|..+ |-.+..+.
T Consensus 100 vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd 133 (425)
T 2ffh_A 100 LWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVA 133 (425)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEee
Confidence 67778999999999999988765 33444443
No 447
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=92.11 E-value=0.062 Score=43.30 Aligned_cols=23 Identities=26% Similarity=0.241 Sum_probs=19.8
Q ss_pred HhccccCCCCcHHHHHHHHHHHc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM 77 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~ 77 (321)
-++|.|++|+|||+|+++++..-
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhhCC
Confidence 46788999999999999998643
No 448
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=92.07 E-value=0.063 Score=42.92 Aligned_cols=23 Identities=26% Similarity=0.254 Sum_probs=20.1
Q ss_pred HhccccCCCCcHHHHHHHHHHHc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM 77 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~ 77 (321)
-+++.|++|+|||++++++....
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 46788999999999999998654
No 449
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=92.06 E-value=0.064 Score=42.70 Aligned_cols=21 Identities=24% Similarity=0.222 Sum_probs=18.7
Q ss_pred hccccCCCCcHHHHHHHHHHH
Q 020787 56 LCIWGGKGQGKSFQTELIFQA 76 (321)
Q Consensus 56 LgL~GPPGcGKTllaravA~e 76 (321)
+++.|+||+|||+|+.++...
T Consensus 10 i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 10 ILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 578999999999999999764
No 450
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=92.03 E-value=0.058 Score=50.29 Aligned_cols=29 Identities=21% Similarity=0.319 Sum_probs=22.8
Q ss_pred cCCCCCCCcceecCCCHHHHHHHHHHHhhcC
Q 020787 189 PLIRDGRMEKFYWQPNLEDILNIVHRMYEKD 219 (321)
Q Consensus 189 ALlRpGRfDr~i~~Pd~~~R~~Il~~~~~~~ 219 (321)
.+++.|.+|+++..| ++|..|+..++.-.
T Consensus 136 ~~i~Qg~~~~il~~~--~eR~~ll~~l~~~~ 164 (339)
T 3qkt_A 136 IYIRQGQIDAILESD--EAREKVVREVLNLD 164 (339)
T ss_dssp TEECTTCTTGGGSCT--THHHHHHHHHHTTC
T ss_pred eEecchhHHHHHhCh--HHHHHHHHHHhCch
Confidence 578999999987656 68899998776544
No 451
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=91.97 E-value=0.053 Score=43.10 Aligned_cols=20 Identities=25% Similarity=0.346 Sum_probs=17.4
Q ss_pred hccccCCCCcHHHHHHHHHH
Q 020787 56 LCIWGGKGQGKSFQTELIFQ 75 (321)
Q Consensus 56 LgL~GPPGcGKTllaravA~ 75 (321)
++|.|+||+|||+|++++.+
T Consensus 5 i~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 5 VLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEESTTSSHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHcC
Confidence 46889999999999998853
No 452
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=91.97 E-value=0.041 Score=55.44 Aligned_cols=23 Identities=22% Similarity=0.382 Sum_probs=21.4
Q ss_pred HhccccCCCCcHHHHHHHHHHHc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM 77 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~ 77 (321)
+++|.||+|||||+|.++++...
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 89999999999999999999864
No 453
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=91.97 E-value=0.048 Score=55.78 Aligned_cols=24 Identities=21% Similarity=0.266 Sum_probs=22.0
Q ss_pred HhccccCCCCcHHHHHHHHHHHcC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMG 78 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g 78 (321)
+++|.||+|||||+|.++++....
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~~ 407 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVEE 407 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 899999999999999999998653
No 454
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=91.93 E-value=0.058 Score=43.22 Aligned_cols=21 Identities=33% Similarity=0.281 Sum_probs=18.3
Q ss_pred HhccccCCCCcHHHHHHHHHH
Q 020787 55 SLCIWGGKGQGKSFQTELIFQ 75 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~ 75 (321)
-++|.|+||+|||+|+.++..
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 357899999999999999864
No 455
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=91.90 E-value=0.067 Score=43.12 Aligned_cols=22 Identities=27% Similarity=0.342 Sum_probs=19.3
Q ss_pred HhccccCCCCcHHHHHHHHHHH
Q 020787 55 SLCIWGGKGQGKSFQTELIFQA 76 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e 76 (321)
-++|.|+||+|||+|+.++...
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4678899999999999999865
No 456
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=91.89 E-value=0.057 Score=50.78 Aligned_cols=30 Identities=20% Similarity=0.279 Sum_probs=23.7
Q ss_pred HhccccCCCCcHHHHHHHHHHHc---CCceEEe
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM---GIEPVIM 84 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~---g~~~i~v 84 (321)
++++.||+|+|||+++..+|..+ |-.++.+
T Consensus 107 vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVlli 139 (320)
T 1zu4_A 107 IFMLVGVNGTGKTTSLAKMANYYAELGYKVLIA 139 (320)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 78899999999999999888654 4444444
No 457
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=91.88 E-value=0.059 Score=56.81 Aligned_cols=32 Identities=19% Similarity=0.177 Sum_probs=21.5
Q ss_pred HhccccCCCCcHHHHHHHHHHH----cCCceEEeec
Q 020787 55 SLCIWGGKGQGKSFQTELIFQA----MGIEPVIMSA 86 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e----~g~~~i~vs~ 86 (321)
..+|+||||||||+.+..++.. .+..++.+..
T Consensus 377 ~~lI~GppGTGKT~~i~~~i~~l~~~~~~~ILv~a~ 412 (802)
T 2xzl_A 377 LSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAP 412 (802)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEEcC
Confidence 5789999999999876555433 2444444443
No 458
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=91.85 E-value=0.064 Score=43.60 Aligned_cols=24 Identities=17% Similarity=0.333 Sum_probs=20.4
Q ss_pred HhccccCCCCcHHHHHHHHHHHcC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMG 78 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g 78 (321)
-++|.|+||+|||+|++.+.....
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHhhcc
Confidence 467899999999999998887654
No 459
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=91.81 E-value=0.069 Score=44.57 Aligned_cols=23 Identities=22% Similarity=0.196 Sum_probs=20.0
Q ss_pred HhccccCCCCcHHHHHHHHHHHc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM 77 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~ 77 (321)
.+++++|+|+|||+.+-+++.++
T Consensus 50 ~~li~~~tGsGKT~~~~~~~~~~ 72 (216)
T 3b6e_A 50 NIIICLPTGSGKTRVAVYIAKDH 72 (216)
T ss_dssp CEEEECSCHHHHHHHHHHHHHHH
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999998888764
No 460
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=91.80 E-value=0.07 Score=43.98 Aligned_cols=23 Identities=17% Similarity=0.222 Sum_probs=19.9
Q ss_pred HhccccCCCCcHHHHHHHHHHHc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM 77 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~ 77 (321)
-++|.|+||+|||+|+.++...-
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 46889999999999999998743
No 461
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=91.79 E-value=0.064 Score=44.10 Aligned_cols=21 Identities=14% Similarity=0.238 Sum_probs=18.9
Q ss_pred hccccCCCCcHHHHHHHHHHH
Q 020787 56 LCIWGGKGQGKSFQTELIFQA 76 (321)
Q Consensus 56 LgL~GPPGcGKTllaravA~e 76 (321)
+++.|+||+|||+|++.++..
T Consensus 10 i~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 10 IVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 578899999999999999875
No 462
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=91.75 E-value=0.044 Score=53.70 Aligned_cols=21 Identities=24% Similarity=0.314 Sum_probs=20.1
Q ss_pred HhccccCCCCcHHHHHHHHHH
Q 020787 55 SLCIWGGKGQGKSFQTELIFQ 75 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~ 75 (321)
+++|.||+|+|||++.++++.
T Consensus 71 ~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 789999999999999999998
No 463
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=91.73 E-value=0.061 Score=44.29 Aligned_cols=22 Identities=23% Similarity=0.158 Sum_probs=19.4
Q ss_pred hccccCCCCcHHHHHHHHHHHc
Q 020787 56 LCIWGGKGQGKSFQTELIFQAM 77 (321)
Q Consensus 56 LgL~GPPGcGKTllaravA~e~ 77 (321)
++|.|+||+|||+|.++++...
T Consensus 7 i~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 7 VVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp EEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 5789999999999999998753
No 464
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=91.72 E-value=0.066 Score=42.88 Aligned_cols=22 Identities=41% Similarity=0.515 Sum_probs=19.6
Q ss_pred HhccccCCCCcHHHHHHHHHHH
Q 020787 55 SLCIWGGKGQGKSFQTELIFQA 76 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e 76 (321)
.++|.|++|+|||+|++++...
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4678899999999999999876
No 465
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=91.72 E-value=0.042 Score=54.34 Aligned_cols=21 Identities=29% Similarity=0.455 Sum_probs=19.9
Q ss_pred hccccCCCCcHHHHHHHHHHH
Q 020787 56 LCIWGGKGQGKSFQTELIFQA 76 (321)
Q Consensus 56 LgL~GPPGcGKTllaravA~e 76 (321)
++|.||+|+|||+|.++++..
T Consensus 45 vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 45 ILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp EEEECSTTSSSHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhCc
Confidence 899999999999999999875
No 466
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=91.71 E-value=0.073 Score=42.97 Aligned_cols=21 Identities=14% Similarity=0.053 Sum_probs=18.5
Q ss_pred hccccCCCCcHHHHHHHHHHH
Q 020787 56 LCIWGGKGQGKSFQTELIFQA 76 (321)
Q Consensus 56 LgL~GPPGcGKTllaravA~e 76 (321)
+++.|+||+|||+|++.+...
T Consensus 8 i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 8 CVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 578899999999999998864
No 467
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=91.71 E-value=0.07 Score=45.18 Aligned_cols=25 Identities=28% Similarity=0.484 Sum_probs=21.8
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGI 79 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~ 79 (321)
.+.|.|+||+|||+++..++..+..
T Consensus 32 ~i~i~G~~g~GKTTl~~~l~~~~~~ 56 (221)
T 2wsm_A 32 AVNIMGAIGSGKTLLIERTIERIGN 56 (221)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhcc
Confidence 5788899999999999999988643
No 468
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=91.65 E-value=0.051 Score=54.55 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=22.1
Q ss_pred HhccccCCCCcHHHHHHHHHHHcC
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMG 78 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g 78 (321)
+++|.||+|||||+++++++....
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~~ 394 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRFYD 394 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 899999999999999999998764
No 469
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=91.63 E-value=0.074 Score=43.56 Aligned_cols=23 Identities=35% Similarity=0.391 Sum_probs=20.0
Q ss_pred HhccccCCCCcHHHHHHHHHHHc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM 77 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~ 77 (321)
-+++.|++|+|||+++.+++...
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 46788999999999999998754
No 470
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=91.63 E-value=0.49 Score=45.50 Aligned_cols=21 Identities=29% Similarity=0.203 Sum_probs=18.5
Q ss_pred hccccCCCCcHHHHHHHHHHH
Q 020787 56 LCIWGGKGQGKSFQTELIFQA 76 (321)
Q Consensus 56 LgL~GPPGcGKTllaravA~e 76 (321)
+.|.|+||+|||+|...++++
T Consensus 6 V~ivG~~nvGKStL~n~l~~~ 26 (436)
T 2hjg_A 6 VAIVGRPNVGKSTIFNRIAGE 26 (436)
T ss_dssp EEEECSTTSSHHHHHHHHEEE
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 578999999999999988754
No 471
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=91.62 E-value=0.075 Score=43.02 Aligned_cols=22 Identities=36% Similarity=0.431 Sum_probs=19.2
Q ss_pred hccccCCCCcHHHHHHHHHHHc
Q 020787 56 LCIWGGKGQGKSFQTELIFQAM 77 (321)
Q Consensus 56 LgL~GPPGcGKTllaravA~e~ 77 (321)
++|.|+||+|||+|+.++....
T Consensus 7 i~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 7 LVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 5788999999999999998654
No 472
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=91.60 E-value=0.059 Score=53.87 Aligned_cols=39 Identities=21% Similarity=0.129 Sum_probs=27.3
Q ss_pred HhccccCCCCcHHHHHHHHHHHc----------CCceEEeecccccccc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM----------GIEPVIMSAGELESER 93 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~----------g~~~i~vs~~eL~s~~ 93 (321)
-.+|++|.|+|||+.+-+++.++ +-.+|.+...+|...|
T Consensus 24 ~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~ 72 (699)
T 4gl2_A 24 NIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQL 72 (699)
T ss_dssp CEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHH
T ss_pred CEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHH
Confidence 46899999999999998887664 4444444444565555
No 473
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=91.58 E-value=0.07 Score=43.32 Aligned_cols=23 Identities=22% Similarity=0.351 Sum_probs=19.5
Q ss_pred HhccccCCCCcHHHHHHHHHHHc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM 77 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~ 77 (321)
-++|.|++|+|||+|++++...-
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 35788999999999999988653
No 474
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=91.57 E-value=0.072 Score=42.79 Aligned_cols=21 Identities=24% Similarity=0.284 Sum_probs=18.5
Q ss_pred HhccccCCCCcHHHHHHHHHH
Q 020787 55 SLCIWGGKGQGKSFQTELIFQ 75 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~ 75 (321)
.++|.|++|+|||+++.++..
T Consensus 10 ~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 10 VVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp EEEEESCTTTTHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 367899999999999999875
No 475
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=91.56 E-value=0.077 Score=42.78 Aligned_cols=22 Identities=14% Similarity=-0.000 Sum_probs=19.1
Q ss_pred HhccccCCCCcHHHHHHHHHHH
Q 020787 55 SLCIWGGKGQGKSFQTELIFQA 76 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e 76 (321)
-+++.|++|+|||++++.+...
T Consensus 10 ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3678899999999999998864
No 476
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=91.53 E-value=0.057 Score=55.32 Aligned_cols=23 Identities=30% Similarity=0.489 Sum_probs=21.4
Q ss_pred HhccccCCCCcHHHHHHHHHHHc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM 77 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~ 77 (321)
|++|.||.|||||+|.++++...
T Consensus 380 iv~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 380 ILVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp EEEEESCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 69999999999999999999865
No 477
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=91.53 E-value=0.04 Score=49.45 Aligned_cols=36 Identities=22% Similarity=0.319 Sum_probs=27.8
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCc-eEEeeccccc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIE-PVIMSAGELE 90 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~-~i~vs~~eL~ 90 (321)
|+||.|-|||||++.|+.+.+.+|.. +..++-|+.+
T Consensus 13 II~itGk~~SGKd~va~~l~~~~g~~~~~vv~msD~i 49 (202)
T 3ch4_B 13 VLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPL 49 (202)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHCTTTEEEECTHHHH
T ss_pred EEEEECCCCCChHHHHHHHHHHcCCCCceEEEccHHH
Confidence 89999999999999999998888643 3344444433
No 478
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=91.51 E-value=0.065 Score=50.59 Aligned_cols=23 Identities=26% Similarity=0.284 Sum_probs=20.7
Q ss_pred HhccccCCCCcHHHHHHHHHHHc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM 77 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~ 77 (321)
.++|.||||+|||+|..+++...
T Consensus 76 ~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 76 RVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 57899999999999999999754
No 479
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=91.49 E-value=0.061 Score=50.37 Aligned_cols=23 Identities=30% Similarity=0.254 Sum_probs=20.7
Q ss_pred HhccccCCCCcHHHHHHHHHHHc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM 77 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~ 77 (321)
+++|.||||+|||+++.+++..+
T Consensus 58 ~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 58 RLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 67899999999999999998764
No 480
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=91.46 E-value=0.061 Score=51.64 Aligned_cols=38 Identities=21% Similarity=0.217 Sum_probs=27.9
Q ss_pred HhhhhhhccCccccchhhhhHhccccCCCCcHHHHHHHHHHHc
Q 020787 35 VTRSFEYLQGDYYIAPVFMASLCIWGGKGQGKSFQTELIFQAM 77 (321)
Q Consensus 35 ~~~~~~~~~~~~~~~p~f~~iLgL~GPPGcGKTllaravA~e~ 77 (321)
.+|+|.++ .+-++|. +.+|+||+|+|||.+.+|++.-+
T Consensus 13 ~~~~~~~~--~~~~~~g---~~~i~G~nG~GKttll~ai~~~~ 50 (359)
T 2o5v_A 13 NYRNLAPG--TLNFPEG---VTGIYGENGAGKTNLLEAAYLAL 50 (359)
T ss_dssp SBTTCCSE--EEECCSE---EEEEECCTTSSHHHHHHHHHHHH
T ss_pred Cccceeee--EEEEcCC---eEEEECCCCCChhHHHHHHHHhc
Confidence 35556543 2334443 78999999999999999998654
No 481
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=91.43 E-value=0.081 Score=43.33 Aligned_cols=23 Identities=26% Similarity=0.255 Sum_probs=20.0
Q ss_pred HhccccCCCCcHHHHHHHHHHHc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM 77 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~ 77 (321)
-++|.|++|+|||+|+.++....
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 46889999999999999998743
No 482
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=91.41 E-value=0.082 Score=42.55 Aligned_cols=23 Identities=17% Similarity=0.219 Sum_probs=19.7
Q ss_pred HhccccCCCCcHHHHHHHHHHHc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM 77 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~ 77 (321)
-++|.|+||+|||+|+.++....
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 46788999999999999988654
No 483
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=91.38 E-value=0.06 Score=43.83 Aligned_cols=23 Identities=22% Similarity=0.291 Sum_probs=20.1
Q ss_pred HhccccCCCCcHHHHHHHHHHHc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM 77 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~ 77 (321)
.++|.|++|+|||+++.++...-
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 57889999999999999998663
No 484
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=91.38 E-value=0.082 Score=43.52 Aligned_cols=23 Identities=17% Similarity=0.065 Sum_probs=20.1
Q ss_pred HhccccCCCCcHHHHHHHHHHHc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM 77 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~ 77 (321)
-++|.|+||+|||+|+.++...-
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 57889999999999999998654
No 485
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=91.37 E-value=0.086 Score=50.19 Aligned_cols=37 Identities=19% Similarity=0.265 Sum_probs=31.0
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEEeecc-cccc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVIMSAG-ELES 91 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~vs~~-eL~s 91 (321)
..+|++|.|+|||+++-+++.+++...+.+... +|..
T Consensus 110 ~~ll~~~TGsGKT~~~l~~i~~~~~~~Lvl~P~~~L~~ 147 (472)
T 2fwr_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVPTLALAE 147 (472)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCSCEEEEESSHHHHH
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEECCHHHHH
Confidence 378999999999999999999998888888776 5543
No 486
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=91.34 E-value=0.23 Score=49.91 Aligned_cols=48 Identities=15% Similarity=0.113 Sum_probs=34.8
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCc------------eEEeeccccccccCCCcHHHHHHHHHHH
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIE------------PVIMSAGELESERAGEPGKLIRERYRTA 108 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~------------~i~vs~~eL~s~~~GEser~IR~~F~~A 108 (321)
.+||.|++|+|||.|+..+|+...++ +++|-+. +||-.+-+++.+++-
T Consensus 149 r~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~------iGeR~~Ev~e~~~~l 208 (464)
T 3gqb_B 149 KLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAA------MGITQRELSYFIQEF 208 (464)
T ss_dssp BCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEE------EEECHHHHHHHHHHH
T ss_pred EEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEE------ecCchHHHHHHHHHh
Confidence 68999999999999999999998773 3444432 456566666655543
No 487
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=91.30 E-value=0.085 Score=42.82 Aligned_cols=22 Identities=41% Similarity=0.484 Sum_probs=19.5
Q ss_pred HhccccCCCCcHHHHHHHHHHH
Q 020787 55 SLCIWGGKGQGKSFQTELIFQA 76 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e 76 (321)
-++|.|++|+|||+|+.++...
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4678999999999999999865
No 488
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=91.27 E-value=0.16 Score=52.47 Aligned_cols=29 Identities=21% Similarity=0.273 Sum_probs=25.7
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEE
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVI 83 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~ 83 (321)
.++|.||+|||||.|+..+|+...+..++
T Consensus 234 r~~Ifgg~g~GKT~L~~~ia~~~~~~v~V 262 (600)
T 3vr4_A 234 AAAVPGPFGAGKTVVQHQIAKWSDVDLVV 262 (600)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHSSCSEEE
T ss_pred EEeeecCCCccHHHHHHHHHhccCCCEEE
Confidence 78999999999999999999998876544
No 489
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=91.19 E-value=0.33 Score=43.84 Aligned_cols=21 Identities=14% Similarity=0.226 Sum_probs=18.7
Q ss_pred hccccCCCCcHHHHHHHHHHH
Q 020787 56 LCIWGGKGQGKSFQTELIFQA 76 (321)
Q Consensus 56 LgL~GPPGcGKTllaravA~e 76 (321)
++|.|+||||||+|..++.+.
T Consensus 6 I~lvG~~n~GKSTLin~l~g~ 26 (274)
T 3i8s_A 6 IGLIGNPNSGKTTLFNQLTGS 26 (274)
T ss_dssp EEEEECTTSSHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 578999999999999999764
No 490
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=91.17 E-value=0.27 Score=49.35 Aligned_cols=48 Identities=13% Similarity=0.036 Sum_probs=34.7
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCC--c---eEEeeccccccccCCCcHHHHHHHHHHH
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGI--E---PVIMSAGELESERAGEPGKLIRERYRTA 108 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~--~---~i~vs~~eL~s~~~GEser~IR~~F~~A 108 (321)
.+||+|++|+|||.|+..+|+...+ . +++|-+. +||-.+-+++.+++-
T Consensus 153 r~~Ifgg~G~GKt~L~~~Ia~~~~~~~d~~~~~~V~~~------iGeR~~Ev~e~~~~~ 205 (465)
T 3vr4_D 153 KLPVFSGSGLPHKELAAQIARQATVLDSSDDFAVVFAA------IGITFEEAEFFMEDF 205 (465)
T ss_dssp BCCEEECTTSCHHHHHHHHHHHCBCSSCSSCEEEEEEE------EEECHHHHHHHHHHH
T ss_pred EEEEeCCCCcChHHHHHHHHHHHHhccCCCceEEEEEE------ecCCcHHHHHHHHHH
Confidence 6799999999999999999999876 2 3444332 456666666655543
No 491
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=91.15 E-value=0.065 Score=44.00 Aligned_cols=22 Identities=18% Similarity=0.244 Sum_probs=19.5
Q ss_pred HhccccCCCCcHHHHHHHHHHH
Q 020787 55 SLCIWGGKGQGKSFQTELIFQA 76 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e 76 (321)
.++|.|++|+|||++..++...
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 25 EIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999998754
No 492
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=91.14 E-value=0.12 Score=44.93 Aligned_cols=31 Identities=16% Similarity=0.170 Sum_probs=24.6
Q ss_pred HhccccCCCCcHHHHHHHHHHHc--CCceEEee
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM--GIEPVIMS 85 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~--g~~~i~vs 85 (321)
+..+.|.+|+|||+++..+|..+ |-....++
T Consensus 16 i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd 48 (262)
T 1yrb_A 16 IVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVN 48 (262)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEE
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEe
Confidence 77889999999999999998765 54554444
No 493
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.06 E-value=0.09 Score=43.63 Aligned_cols=22 Identities=32% Similarity=0.442 Sum_probs=19.6
Q ss_pred HhccccCCCCcHHHHHHHHHHH
Q 020787 55 SLCIWGGKGQGKSFQTELIFQA 76 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e 76 (321)
-++|.|+||+|||+|++.+...
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4678999999999999999875
No 494
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.06 E-value=0.089 Score=43.48 Aligned_cols=23 Identities=22% Similarity=0.094 Sum_probs=20.4
Q ss_pred HhccccCCCCcHHHHHHHHHHHc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM 77 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~ 77 (321)
-++|.|++|+|||+|+..+...-
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 57889999999999999998765
No 495
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=91.05 E-value=0.077 Score=43.11 Aligned_cols=21 Identities=19% Similarity=0.091 Sum_probs=18.5
Q ss_pred hccccCCCCcHHHHHHHHHHH
Q 020787 56 LCIWGGKGQGKSFQTELIFQA 76 (321)
Q Consensus 56 LgL~GPPGcGKTllaravA~e 76 (321)
+++.|+||+|||+++..+...
T Consensus 4 i~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 4 IIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhCc
Confidence 568899999999999998864
No 496
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=91.03 E-value=0.093 Score=42.78 Aligned_cols=23 Identities=26% Similarity=0.215 Sum_probs=19.9
Q ss_pred HhccccCCCCcHHHHHHHHHHHc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM 77 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~ 77 (321)
.++|.|+||+|||+|+.++....
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 46789999999999999998753
No 497
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=91.03 E-value=0.12 Score=53.28 Aligned_cols=29 Identities=24% Similarity=0.289 Sum_probs=25.4
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCceEE
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIEPVI 83 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~~i~ 83 (321)
..||.||+|||||.|+..+|+...+..++
T Consensus 229 r~~I~g~~g~GKT~L~~~ia~~~~~~~~V 257 (588)
T 3mfy_A 229 TAAIPGPAGSGKTVTQHQLAKWSDAQVVI 257 (588)
T ss_dssp EEEECSCCSHHHHHHHHHHHHHSSCSEEE
T ss_pred eEEeecCCCCCHHHHHHHHHhccCCCEEE
Confidence 78999999999999999999987776444
No 498
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=90.97 E-value=0.09 Score=50.44 Aligned_cols=26 Identities=31% Similarity=0.401 Sum_probs=23.1
Q ss_pred HhccccCCCCcHHHHHHHHHHHcCCc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAMGIE 80 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~g~~ 80 (321)
+.+|.||.|||||.+.+|++.-++..
T Consensus 28 ~~~i~G~nG~GKstll~ai~~~~~~~ 53 (430)
T 1w1w_A 28 FTSIIGPNGSGKSNMMDAISFVLGVR 53 (430)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTC-
T ss_pred EEEEECCCCCCHHHHHHHHHhhhccc
Confidence 78899999999999999999887764
No 499
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=90.97 E-value=0.17 Score=46.79 Aligned_cols=23 Identities=22% Similarity=0.170 Sum_probs=20.8
Q ss_pred HhccccCCCCcHHHHHHHHHHHc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM 77 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~ 77 (321)
+++|.||.|+|||++.+.+++..
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHSC
T ss_pred EEEEEecCCCCHHHHHHHHHhhc
Confidence 67899999999999999999764
No 500
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=90.87 E-value=0.089 Score=43.64 Aligned_cols=23 Identities=30% Similarity=0.460 Sum_probs=20.3
Q ss_pred HhccccCCCCcHHHHHHHHHHHc
Q 020787 55 SLCIWGGKGQGKSFQTELIFQAM 77 (321)
Q Consensus 55 iLgL~GPPGcGKTllaravA~e~ 77 (321)
-++|.|++|+|||+|+..++...
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 67889999999999999998654
Done!