Your job contains 1 sequence.
>020791
MFFDGYGYHGTSFEQSYRCYPASFIEKPQIESGDKIIMPPSALDRLASLHIDYPMLFELR
NNAAERVSHCGVLEFIAEEGMIYMPYWMMENLLLQEGDIVRVKNVTLPKGTYVKLQPHTK
DFLDISNPKAILETTLRNYSCLTTGDSIMVAYNNKKYYIDIIETKPSNAISIIETDCEVD
FAPPLDYKEPEKPIASASSRATAKAEEASVETEPKFSPFTGVARRLDGKPLTYQPPPVPS
LGSKDKQPATSNGTGQPSAGSTSQNAARQSQGKLVFGSNASLHPKETQKPVAEKEIKQEL
PEKKEEPKFRPFTGKKYSLKG
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 020791
(321 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2050054 - symbol:UFD1 "AT2G21270" species:3702... 1236 7.8e-126 1
TAIR|locus:2120247 - symbol:AT4G38930 "AT4G38930" species... 1153 4.9e-117 1
TAIR|locus:2066122 - symbol:AT2G29070 species:3702 "Arabi... 968 2.0e-97 1
DICTYBASE|DDB_G0271122 - symbol:ufd1 "ubiquitin fusion de... 595 1.7e-67 3
MGI|MGI:109353 - symbol:Ufd1l "ubiquitin fusion degradati... 629 1.6e-61 1
RGD|619822 - symbol:Ufd1l "ubiquitin fusion degradation 1... 629 1.6e-61 1
ZFIN|ZDB-GENE-040718-150 - symbol:ufd1l "ubiquitin fusion... 629 1.6e-61 1
UNIPROTKB|J9NYF2 - symbol:UFD1L "Uncharacterized protein"... 625 4.3e-61 1
UNIPROTKB|F1RK61 - symbol:UFD1L "Uncharacterized protein"... 625 4.3e-61 1
UNIPROTKB|Q92890 - symbol:UFD1L "Ubiquitin fusion degrada... 621 1.2e-60 1
UNIPROTKB|F1NVD8 - symbol:UFD1L "Uncharacterized protein"... 613 8.1e-60 1
UNIPROTKB|F1PAI5 - symbol:UFD1L "Uncharacterized protein"... 604 7.3e-59 1
FB|FBgn0036136 - symbol:Ufd1-like "Ubiquitin fusion-degra... 577 5.3e-56 1
UNIPROTKB|Q0P568 - symbol:UFD1L "Ubiquitin fusion degrada... 576 6.8e-56 1
UNIPROTKB|A6NJ11 - symbol:UFD1L "Ubiquitin fusion degrada... 545 1.3e-52 1
GENEDB_PFALCIPARUM|PF14_0178 - symbol:PF14_0178 "hypothet... 544 1.7e-52 1
UNIPROTKB|Q8ILR6 - symbol:UFD1 "Ubiquitin fusion degradat... 544 1.7e-52 1
POMBASE|SPBC16A3.09c - symbol:ufd1 "Cdc48-Ufd1-Npl4 compl... 509 8.5e-49 1
SGD|S000003280 - symbol:UFD1 "Substrate-recruiting cofact... 489 8.7e-49 2
UNIPROTKB|G4NAF1 - symbol:MGG_03175 "Ubiquitin fusion deg... 467 1.2e-47 2
UNIPROTKB|C9IZG3 - symbol:UFD1L "Ubiquitin fusion degrada... 491 6.9e-47 1
CGD|CAL0002326 - symbol:orf19.5833 species:5476 "Candida ... 487 1.8e-46 1
WB|WBGene00006733 - symbol:ufd-1 species:6239 "Caenorhabd... 439 2.2e-41 1
UNIPROTKB|C9JNP9 - symbol:UFD1L "Ubiquitin fusion degrada... 384 1.5e-35 1
UNIPROTKB|C9J6N9 - symbol:UFD1L "Ubiquitin fusion degrada... 376 1.1e-34 1
TAIR|locus:2130120 - symbol:AT4G15420 species:3702 "Arabi... 285 2.4e-24 1
UNIPROTKB|C9J7C8 - symbol:UFD1L "Ubiquitin fusion degrada... 227 6.5e-19 1
ASPGD|ASPL0000066677 - symbol:AN10877 species:162425 "Eme... 187 2.9e-13 2
TAIR|locus:2116787 - symbol:AT4G31880 species:3702 "Arabi... 98 0.00069 2
>TAIR|locus:2050054 [details] [associations]
symbol:UFD1 "AT2G21270" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=IEA;ISS]
[GO:0009507 "chloroplast" evidence=ISM] [GO:0005829 "cytosol"
evidence=IDA] InterPro:IPR004854 Pfam:PF03152 GO:GO:0005829
EMBL:CP002685 EMBL:AC006841 GO:GO:0006511 eggNOG:COG5140
HOGENOM:HOG000212737 KO:K14016 PANTHER:PTHR12555 EMBL:AK317375
IPI:IPI00846355 RefSeq:NP_001077933.1 UniGene:At.39582
ProteinModelPortal:A8MQW3 SMR:A8MQW3 PaxDb:A8MQW3 PRIDE:A8MQW3
EnsemblPlants:AT2G21270.3 GeneID:816666 KEGG:ath:AT2G21270
TAIR:At2g21270 OMA:AERTSHC PhylomeDB:A8MQW3 ProtClustDB:CLSN2688302
Genevestigator:A8MQW3 Uniprot:A8MQW3
Length = 340
Score = 1236 (440.2 bits), Expect = 7.8e-126, P = 7.8e-126
Identities = 237/322 (73%), Positives = 264/322 (81%)
Query: 1 MFFDGYGYHGTSFEQSYRCYPASFIEKPQIESGDKIIMPPSALDRLASLHIDYPMLFELR 60
MFFDGY YHGT+FEQSYRCYPASFI+KPQ+ESGDKIIMPPSALDRLASLHIDYPMLFELR
Sbjct: 22 MFFDGYHYHGTTFEQSYRCYPASFIDKPQLESGDKIIMPPSALDRLASLHIDYPMLFELR 81
Query: 61 NNAAERVSHCGVLEFIAEEGMIYMPYWMMENLLLQEGDIVRVKNVTLPKGTYVKLQPHTK 120
N ERV+HCGVLEFIAEEGMIYMPYWMM+NLLLQEGDIVRV+NVTLPKGTYVKLQPHT
Sbjct: 82 NAGIERVTHCGVLEFIAEEGMIYMPYWMMQNLLLQEGDIVRVRNVTLPKGTYVKLQPHTT 141
Query: 121 DFLDISNPKAILETTLRNYSCLTTGDSIMVAYNNKKYYIDIIETKPSNAISIIETDCEVD 180
DFLDISNPKAILET LRNYSCLT+GDSIMV YNNKKY+IDI+ETKP+NAISIIETDCEVD
Sbjct: 142 DFLDISNPKAILETALRNYSCLTSGDSIMVPYNNKKYFIDIVETKPANAISIIETDCEVD 201
Query: 181 FAPPLDYKEPEKPIASASSRATAKAEEASVETEPKFSPFTGVARRLDGKPLTYQPPPVPS 240
FAPPLDYKEPE+P A ++++ AKAEE E EPKF+PFTG RRLDG+PL Y+P P S
Sbjct: 202 FAPPLDYKEPERPTAPSAAKGPAKAEEVVDEPEPKFNPFTGSGRRLDGRPLAYEPAPASS 261
Query: 241 LGSKDKQPATSNGTGQPSAGSTSQNAARQSQGKLVFGSNASLHPKETQKPV-AXXXXXXX 299
SK KQP +NG GQ S S+S+ A R +QGKLVFG+N + PKE V A
Sbjct: 262 --SKGKQPVVANGNGQSSVASSSEKATR-AQGKLVFGANGNRAPKEAAPKVGAAKETKKE 318
Query: 300 XXXXXXXXXFRPFTGKKYSLKG 321
F+ F+GKKYSL+G
Sbjct: 319 EQEKKDEPKFQAFSGKKYSLRG 340
>TAIR|locus:2120247 [details] [associations]
symbol:AT4G38930 "AT4G38930" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0006511 "ubiquitin-dependent protein
catabolic process" evidence=IEA;ISS] InterPro:IPR004854
Pfam:PF03152 EMBL:CP002687 GO:GO:0006511 EMBL:AL035679
EMBL:AL161594 HOGENOM:HOG000212737 KO:K14016 PANTHER:PTHR12555
OMA:NQTNEAS IPI:IPI00528563 PIR:T06053 RefSeq:NP_974709.1
UniGene:At.2837 UniGene:At.67000 ProteinModelPortal:Q9SVK0
SMR:Q9SVK0 PRIDE:Q9SVK0 DNASU:830048 EnsemblPlants:AT4G38930.2
GeneID:830048 KEGG:ath:AT4G38930 TAIR:At4g38930 InParanoid:Q9SVK0
PhylomeDB:Q9SVK0 ProtClustDB:CLSN2917686 ArrayExpress:Q9SVK0
Genevestigator:Q9SVK0 Uniprot:Q9SVK0
Length = 315
Score = 1153 (410.9 bits), Expect = 4.9e-117, P = 4.9e-117
Identities = 224/325 (68%), Positives = 257/325 (79%)
Query: 1 MFFDGYGYHGTSFEQSYRCYPASFIEKPQIESGDKIIMPPSALDRLASLHIDYPMLFELR 60
MF+DGY YHGT+FEQ+YRCYP+SFI+KPQIESGDKIIMPPSALDRLASL IDYPMLFELR
Sbjct: 1 MFYDGYAYHGTTFEQTYRCYPSSFIDKPQIESGDKIIMPPSALDRLASLQIDYPMLFELR 60
Query: 61 NNAAERVSHCGVLEFIAEEGMIYMPYWMMENLLLQEGDIVRVKNVTLPKGTYVKLQPHTK 120
N + + SHCGVLEFIAEEG+IY+PYWMM+NLLLQEGD+VRV+NVTLPKGTYVKLQPHT
Sbjct: 61 NASTDSFSHCGVLEFIAEEGVIYIPYWMMQNLLLQEGDMVRVRNVTLPKGTYVKLQPHTT 120
Query: 121 DFLDISNPKAILETTLRNYSCLTTGDSIMVAYNNKKYYIDIIETKPSNAISIIETDCEVD 180
DFLDI+NPKAILET LRNYSCLT GDSIMV YNNKKY+IDI+E KPSN ISIIETDCEVD
Sbjct: 121 DFLDIANPKAILETALRNYSCLTVGDSIMVPYNNKKYFIDIVEAKPSNGISIIETDCEVD 180
Query: 181 FAPPLDYKEPEKPIASASSRATAKAEEASV-ETEPKFSPFTGVARRLDGKPLTYQPPPVP 239
FAPPLDYKEPE+P+A A ++ AKA+E V E EPKF+PFTG RRLDG+PL+Y+P P
Sbjct: 181 FAPPLDYKEPERPVAPAPAKGEAKAKEVDVAEAEPKFNPFTGSGRRLDGRPLSYEPQP-- 238
Query: 240 SLGSKDKQPATSNGTGQPSAGSTS---QNAARQSQGKLVFGSNASLHPKETQKPVAXXXX 296
G+ A SNG P A S+S + A +Q++GKLVFGSN KET K V
Sbjct: 239 --GA-----ANSNGQSHPVASSSSSGSEKATQQNRGKLVFGSNVERSTKETTK-VGAGKD 290
Query: 297 XXXXXXXXXXXXFRPFTGKKYSLKG 321
F+ F+GKKYSL+G
Sbjct: 291 RKQEEEAEKEAKFQAFSGKKYSLRG 315
>TAIR|locus:2066122 [details] [associations]
symbol:AT2G29070 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=IEA;ISS]
[GO:0009507 "chloroplast" evidence=ISM] InterPro:IPR004854
Pfam:PF03152 EMBL:CP002685 GO:GO:0006511 HOGENOM:HOG000212737
KO:K14016 OMA:IDKAHLE PANTHER:PTHR12555 EMBL:BT011682 EMBL:BT012260
IPI:IPI00519577 RefSeq:NP_973557.1 UniGene:At.43163
ProteinModelPortal:Q6NLS0 SMR:Q6NLS0 EnsemblPlants:AT2G29070.2
GeneID:817455 KEGG:ath:AT2G29070 TAIR:At2g29070 InParanoid:Q6NLS0
PhylomeDB:Q6NLS0 ProtClustDB:CLSN2918124 Genevestigator:Q6NLS0
Uniprot:Q6NLS0
Length = 312
Score = 968 (345.8 bits), Expect = 2.0e-97, P = 2.0e-97
Identities = 187/315 (59%), Positives = 228/315 (72%)
Query: 10 GTSFEQSYRCYPASFIEKPQIESGDKIIMPPSALDRLASLHIDYPMLFELRNNAAERVSH 69
G+SFEQ YRCYP +FI+K +E GDKIIMPPSALDRLASLHI+YPMLF+L N + E+ SH
Sbjct: 5 GSSFEQCYRCYPVTFIDKAHLEKGDKIIMPPSALDRLASLHIEYPMLFQLSNVSVEKTSH 64
Query: 70 CGVLEFIAEEGMIYMPYWMMENLLLQEGDIVRVKNVTLPKGTYVKLQPHTKDFLDISNPK 129
CGVLEF A+EG++Y+PYWMM+N+ L+EGD+++VKN++L KGTY+KLQPHT+DFLDISNPK
Sbjct: 65 CGVLEFTADEGLVYLPYWMMQNMSLEEGDVMQVKNISLVKGTYIKLQPHTQDFLDISNPK 124
Query: 130 AILETTLRNYSCLTTGDSIMVAYNNKKYYIDIIETKPSNAISIIETDCEVDFAPPLDYKE 189
AILETTLR+YSCLTTGD+IMV YNNK+YYI+++E KPS+A+SIIETDCEVDFAPPLDYKE
Sbjct: 125 AILETTLRSYSCLTTGDTIMVPYNNKQYYINVVEAKPSSAVSIIETDCEVDFAPPLDYKE 184
Query: 190 PEKP--IASASSRAT-AKAEEASVETEPKFSPFTGVARRLDGKPLTYQPPPVPSLGSKDK 246
PEKP + ++ R K EE PKF+PFTG +RLDGK T P +K +
Sbjct: 185 PEKPQKLTPSNKRPLQVKEEEEPASKVPKFTPFTGSGKRLDGKAQTQTEPE----DTKQQ 240
Query: 247 QPATSNGTGQPSAGSTSQNAARQSQGKLVFGSNASLHPKETQKPVAXXXXXXXXXXXXXX 306
+ T NG T+ RQ GKLVFGSN+ KET K
Sbjct: 241 EKPTENGKDDEKLSVTTP---RQISGKLVFGSNSKSAAKETAKVDDPKNIVQESSTKSDE 297
Query: 307 XXFRPFTGKKYSLKG 321
F+ FTGKKYSL G
Sbjct: 298 AKFKVFTGKKYSLNG 312
>DICTYBASE|DDB_G0271122 [details] [associations]
symbol:ufd1 "ubiquitin fusion degradation protein
UFD1 family protein" species:44689 "Dictyostelium discoideum"
[GO:0006511 "ubiquitin-dependent protein catabolic process"
evidence=IEA;ISS] [GO:0005789 "endoplasmic reticulum membrane"
evidence=ISS] [GO:0043161 "proteasomal ubiquitin-dependent protein
catabolic process" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR004854 Pfam:PF03152 UniPathway:UPA00144
dictyBase:DDB_G0271122 GO:GO:0043161 GenomeReviews:CM000151_GR
EMBL:AAFI02000006 GO:GO:0006511 eggNOG:COG5140 KO:K14016
PANTHER:PTHR12555 RefSeq:XP_645814.1 HSSP:P53044
ProteinModelPortal:Q55BK0 SMR:Q55BK0 STRING:Q55BK0
EnsemblProtists:DDB0238023 GeneID:8617805 KEGG:ddi:DDB_G0271122
OMA:NQTNEAS Uniprot:Q55BK0
Length = 330
Score = 595 (214.5 bits), Expect = 1.7e-67, Sum P(3) = 1.7e-67
Identities = 109/194 (56%), Positives = 146/194 (75%)
Query: 8 YHGTS--FEQSYRCYPASFI--EKPQIESGDKIIMPPSALDRLASLHIDYPMLFELRNNA 63
+HG +EQ ++ +P SF+ EK +ESG KI++PPSAL+ L+ L+I YPMLFE+ N
Sbjct: 18 HHGGPGRYEQKFKAFPISFLPKEKHSLESGGKILLPPSALNALSRLNIQYPMLFEISNPI 77
Query: 64 AERVSHCGVLEFIAEEGMIYMPYWMMENLLLQEGDIVRVKNVTLPKGTYVKLQPHTKDFL 123
+ + SHCGVLEFIAEEG+ Y+P WMM+NL L+EG+ + +KN TL KGT+VK+QP T +F+
Sbjct: 78 SGKKSHCGVLEFIAEEGICYLPLWMMQNLQLKEGEFIDIKNATLAKGTFVKIQPRTSNFI 137
Query: 124 DISNPKAILETTLRNYSCLTTGDSIMVAYNNKKYYIDIIETKPSNAISIIETDCEVDFAP 183
DISNPKA+LE +LR ++ LT D IM+ YNN KYY+ ++E KP+NAISIIE D VDFAP
Sbjct: 138 DISNPKAVLENSLRKFATLTKDDEIMIDYNNTKYYLKVVELKPANAISIIEADVSVDFAP 197
Query: 184 PLDYKEPEKPIASA 197
P+D KE P S+
Sbjct: 198 PMDSKEATSPSTSS 211
Score = 83 (34.3 bits), Expect = 1.7e-67, Sum P(3) = 1.7e-67
Identities = 20/85 (23%), Positives = 34/85 (40%)
Query: 192 KPIASASSRATAKAEEASVETEPKFSPFTGVARRLDGK---PLTYQPPPVPSLGSKDKQP 248
KPI + ++ + EPKF F G RLDGK PL P + + + +
Sbjct: 233 KPIPGGKKKKDESDSDSDSDDEPKFKAFAGTGARLDGKVGTPLGTSPKTLNTNNNNNNNN 292
Query: 249 ATSNGTGQPSAGSTSQNAARQSQGK 273
+N + +++ N + K
Sbjct: 293 NNNNNNNNNNNNNSNNNNTKNEDTK 317
Score = 38 (18.4 bits), Expect = 1.7e-67, Sum P(3) = 1.7e-67
Identities = 7/12 (58%), Positives = 10/12 (83%)
Query: 309 FRPFTGKKYSLK 320
F+ F+GK +SLK
Sbjct: 318 FKSFSGKGHSLK 329
>MGI|MGI:109353 [details] [associations]
symbol:Ufd1l "ubiquitin fusion degradation 1 like"
species:10090 "Mus musculus" [GO:0005102 "receptor binding"
evidence=ISO] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006511 "ubiquitin-dependent protein
catabolic process" evidence=IEA] [GO:0032403 "protein complex
binding" evidence=ISO] InterPro:IPR004854 Pfam:PF03152
UniPathway:UPA00144 MGI:MGI:109353 GO:GO:0005829 GO:GO:0005634
GO:GO:0005737 GO:GO:0043161 EMBL:CH466521 eggNOG:COG5140
GeneTree:ENSGT00390000002408 HOGENOM:HOG000212737 KO:K14016
PANTHER:PTHR12555 CTD:7353 HOVERGEN:HBG001266 OrthoDB:EOG4H9XKW
EMBL:U64445 EMBL:AK147138 EMBL:AK169062 EMBL:BC006630
IPI:IPI00656165 RefSeq:NP_035802.3 UniGene:Mm.237594
ProteinModelPortal:P70362 SMR:P70362 STRING:P70362
PhosphoSite:P70362 REPRODUCTION-2DPAGE:P70362 PaxDb:P70362
PRIDE:P70362 Ensembl:ENSMUST00000005394 Ensembl:ENSMUST00000115578
GeneID:22230 KEGG:mmu:22230 InParanoid:Q923C4 OMA:IRNSRPQ
NextBio:302271 Bgee:P70362 CleanEx:MM_UFD1L Genevestigator:P70362
GermOnline:ENSMUSG00000005262 Uniprot:P70362
Length = 307
Score = 629 (226.5 bits), Expect = 1.6e-61, P = 1.6e-61
Identities = 119/231 (51%), Positives = 158/231 (68%)
Query: 13 FEQSYRCYPASFIEKPQ----IESGDKIIMPPSALDRLASLHIDYPMLFELRNNAAERVS 68
F YRC+ S + P +E G KIIMPPSALD+L+ L+I YPMLF+L N ++R++
Sbjct: 19 FSTQYRCFSVSMLAGPNDRSDVEKGGKIIMPPSALDQLSRLNITYPMLFKLTNKNSDRMT 78
Query: 69 HCGVLEFIAEEGMIYMPYWMMENLLLQEGDIVRVKNVTLPKGTYVKLQPHTKDFLDISNP 128
HCGVLEF+A+EG+ Y+P+WMM+NLLL+EG +V+V++V L TY K QP + DFLDI+NP
Sbjct: 79 HCGVLEFVADEGICYLPHWMMQNLLLEEGGLVQVESVNLQVATYSKFQPQSPDFLDITNP 138
Query: 129 KAILETTLRNYSCLTTGDSIMVAYNNKKYYIDIIETKPSNAISIIETDCEVDFAPPLDYK 188
KA+LE LRN++CLTTGD I + YN K Y + ++ETKP A+SIIE D VDF PL YK
Sbjct: 139 KAVLENALRNFACLTTGDVIAINYNEKIYELRVMETKPDKAVSIIECDMNVDFDAPLGYK 198
Query: 189 EPEKPIASASSRATAKAEEASVETEPKFSPFTGVARRLDGKPLTYQPPPVP 239
EPE+P+ S +A+ + E F F+G RLDGK +P P P
Sbjct: 199 EPERPVQHEES-IEGEADHSGYAGEVGFRAFSGSGNRLDGKKKGVEPSPSP 248
>RGD|619822 [details] [associations]
symbol:Ufd1l "ubiquitin fusion degradation 1 like (yeast)"
species:10116 "Rattus norvegicus" [GO:0005102 "receptor binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005829 "cytosol" evidence=IEA]
[GO:0032403 "protein complex binding" evidence=IPI] [GO:0043161
"proteasomal ubiquitin-dependent protein catabolic process"
evidence=IEA] InterPro:IPR004854 Pfam:PF03152 UniPathway:UPA00144
RGD:619822 GO:GO:0005829 GO:GO:0005634 GO:GO:0043161 EMBL:CH473999
KO:K14016 PANTHER:PTHR12555 HSSP:P53044 CTD:7353 EMBL:AF234601
EMBL:BC161818 IPI:IPI00195248 RefSeq:NP_445870.1 UniGene:Rn.11946
ProteinModelPortal:Q9ES53 SMR:Q9ES53 IntAct:Q9ES53
PhosphoSite:Q9ES53 PRIDE:Q9ES53 GeneID:84478 KEGG:rno:84478
NextBio:616986 Genevestigator:Q9ES53 Uniprot:Q9ES53
Length = 307
Score = 629 (226.5 bits), Expect = 1.6e-61, P = 1.6e-61
Identities = 119/231 (51%), Positives = 158/231 (68%)
Query: 13 FEQSYRCYPASFIEKPQ----IESGDKIIMPPSALDRLASLHIDYPMLFELRNNAAERVS 68
F YRC+ S + P +E G KIIMPPSALD+L+ L+I YPMLF+L N ++R++
Sbjct: 19 FSTQYRCFSVSMLAGPNDRSDVEKGGKIIMPPSALDQLSRLNITYPMLFKLTNKNSDRMT 78
Query: 69 HCGVLEFIAEEGMIYMPYWMMENLLLQEGDIVRVKNVTLPKGTYVKLQPHTKDFLDISNP 128
HCGVLEF+A+EG+ Y+P+WMM+NLLL+EG +V+V++V L TY K QP + DFLDI+NP
Sbjct: 79 HCGVLEFVADEGICYLPHWMMQNLLLEEGGLVQVESVNLQVATYSKFQPQSPDFLDITNP 138
Query: 129 KAILETTLRNYSCLTTGDSIMVAYNNKKYYIDIIETKPSNAISIIETDCEVDFAPPLDYK 188
KA+LE LRN++CLTTGD I + YN K Y + ++ETKP A+SIIE D VDF PL YK
Sbjct: 139 KAVLENALRNFACLTTGDVIAINYNEKIYELRVMETKPDKAVSIIECDMNVDFDAPLGYK 198
Query: 189 EPEKPIASASSRATAKAEEASVETEPKFSPFTGVARRLDGKPLTYQPPPVP 239
EPE+P+ S +A+ + E F F+G RLDGK +P P P
Sbjct: 199 EPERPVQHEES-IEGEADHSGYAGEVGFRAFSGSGNRLDGKKKGVEPSPSP 248
>ZFIN|ZDB-GENE-040718-150 [details] [associations]
symbol:ufd1l "ubiquitin fusion degradation 1-like"
species:7955 "Danio rerio" [GO:0006511 "ubiquitin-dependent protein
catabolic process" evidence=IEA] [GO:0042221 "response to chemical
stimulus" evidence=IDA] InterPro:IPR004854 Pfam:PF03152
ZFIN:ZDB-GENE-040718-150 GO:GO:0042221 GO:GO:0006511 EMBL:BX323451
GeneTree:ENSGT00390000002408 HOGENOM:HOG000212737 KO:K14016
PANTHER:PTHR12555 CTD:7353 HOVERGEN:HBG001266 OMA:IRNSRPQ
EMBL:FP085395 EMBL:BC076020 EMBL:BC153586 EMBL:AY648824
IPI:IPI00489675 RefSeq:NP_001002451.1 UniGene:Dr.79033 SMR:Q6DRD5
STRING:Q6DRD5 Ensembl:ENSDART00000034968 GeneID:436724
KEGG:dre:436724 InParanoid:Q6DRD5 NextBio:20831165 Uniprot:Q6DRD5
Length = 308
Score = 629 (226.5 bits), Expect = 1.6e-61, P = 1.6e-61
Identities = 118/231 (51%), Positives = 157/231 (67%)
Query: 13 FEQSYRCYPASFIEKPQ----IESGDKIIMPPSALDRLASLHIDYPMLFELRNNAAERVS 68
F YRCY S + P +E G KIIMPPSALD+L+ L+I YPMLF+L N ++R++
Sbjct: 19 FSTQYRCYSVSMLAGPNDRSDVEKGGKIIMPPSALDQLSRLNITYPMLFKLTNKNSDRMT 78
Query: 69 HCGVLEFIAEEGMIYMPYWMMENLLLQEGDIVRVKNVTLPKGTYVKLQPHTKDFLDISNP 128
HCGVLEF+A+EG Y+P+WMM+NLLL+EG +V+V++V L TY K QP + DFLDI+NP
Sbjct: 79 HCGVLEFVADEGFCYLPHWMMQNLLLEEGGLVQVESVNLMVATYSKFQPQSPDFLDITNP 138
Query: 129 KAILETTLRNYSCLTTGDSIMVAYNNKKYYIDIIETKPSNAISIIETDCEVDFAPPLDYK 188
KA+LE LRN++CLTTGD I + YN K Y + ++ETKP A+SIIE D VDF PL YK
Sbjct: 139 KAVLENALRNFACLTTGDVIAINYNEKIYELRVMETKPDKAVSIIECDMNVDFDAPLGYK 198
Query: 189 EPEKPIASASSRATAKAEEASVETEPKFSPFTGVARRLDGKPLTYQPPPVP 239
EPE+ + A + + ++ + + F FTG RLDGK +P P P
Sbjct: 199 EPERHMQHPEEPAEEETDPSNYDMDLGFRAFTGSGNRLDGKKKGIEPSPAP 249
>UNIPROTKB|J9NYF2 [details] [associations]
symbol:UFD1L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006511 "ubiquitin-dependent protein
catabolic process" evidence=IEA] InterPro:IPR004854 Pfam:PF03152
GO:GO:0006511 GeneTree:ENSGT00390000002408 KO:K14016
PANTHER:PTHR12555 CTD:7353 EMBL:AAEX03014865 EMBL:AAEX03014866
RefSeq:XP_850373.3 Ensembl:ENSCAFT00000047839 GeneID:608300
KEGG:cfa:608300 Uniprot:J9NYF2
Length = 307
Score = 625 (225.1 bits), Expect = 4.3e-61, P = 4.3e-61
Identities = 119/231 (51%), Positives = 158/231 (68%)
Query: 13 FEQSYRCYPASFIEKPQ----IESGDKIIMPPSALDRLASLHIDYPMLFELRNNAAERVS 68
F YRC+ S + P +E G KIIMPPSALD+L+ L+I YPMLF+L N ++R++
Sbjct: 19 FSTQYRCFSVSMLAGPNDRSDVEKGGKIIMPPSALDQLSRLNITYPMLFKLTNKNSDRMT 78
Query: 69 HCGVLEFIAEEGMIYMPYWMMENLLLQEGDIVRVKNVTLPKGTYVKLQPHTKDFLDISNP 128
HCGVLEF+A+EG+ Y+P+WMM+NLLL+EG +V+V++V L TY K QP + DFLDI+NP
Sbjct: 79 HCGVLEFVADEGICYLPHWMMQNLLLEEGGLVQVESVNLQVATYSKFQPQSPDFLDITNP 138
Query: 129 KAILETTLRNYSCLTTGDSIMVAYNNKKYYIDIIETKPSNAISIIETDCEVDFAPPLDYK 188
KA+LE LRN++CLTTGD I + YN K Y + ++ETKP A+SIIE D VDF PL YK
Sbjct: 139 KAVLENALRNFACLTTGDVIAINYNEKIYELRVMETKPDKAVSIIECDMNVDFDAPLGYK 198
Query: 189 EPEKPIASASSRATAKAEEASVETEPKFSPFTGVARRLDGKPLTYQPPPVP 239
EPE+ + S A +A+ + E F F+G RLDGK +P P P
Sbjct: 199 EPERQVQHEES-AEGEADHSGYAGELGFRAFSGSGNRLDGKKKGVEPSPSP 248
>UNIPROTKB|F1RK61 [details] [associations]
symbol:UFD1L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=IEA]
InterPro:IPR004854 Pfam:PF03152 GO:GO:0005737 GO:GO:0006511
GeneTree:ENSGT00390000002408 PANTHER:PTHR12555 OMA:IRNSRPQ
EMBL:CU468637 EMBL:CU618331 Ensembl:ENSSSCT00000011082
Uniprot:F1RK61
Length = 307
Score = 625 (225.1 bits), Expect = 4.3e-61, P = 4.3e-61
Identities = 120/231 (51%), Positives = 157/231 (67%)
Query: 13 FEQSYRCYPASFIEKPQ----IESGDKIIMPPSALDRLASLHIDYPMLFELRNNAAERVS 68
F YRC+ S + P +E G KIIMPPSALD+L+ L+I YPMLF+L N ++R++
Sbjct: 19 FSTQYRCFSVSMLAGPNDRSDVEKGGKIIMPPSALDQLSRLNITYPMLFKLTNKNSDRMT 78
Query: 69 HCGVLEFIAEEGMIYMPYWMMENLLLQEGDIVRVKNVTLPKGTYVKLQPHTKDFLDISNP 128
HCGVLEF+A+EG+ Y+P+WMM+NLLL+EG +V+V++V L TY K QP + DFLDI+NP
Sbjct: 79 HCGVLEFVADEGICYLPHWMMQNLLLEEGGLVQVESVNLQVATYSKFQPQSPDFLDITNP 138
Query: 129 KAILETTLRNYSCLTTGDSIMVAYNNKKYYIDIIETKPSNAISIIETDCEVDFAPPLDYK 188
KA+LE LRN++CLTTGD I + YN K Y + ++ETKP A+SIIE D VDF PL YK
Sbjct: 139 KAVLENALRNFACLTTGDVIAINYNEKIYELRVMETKPDKAVSIIECDMNVDFDAPLGYK 198
Query: 189 EPEKPIASASSRATAKAEEASVETEPKFSPFTGVARRLDGKPLTYQPPPVP 239
EPE+ I S A +A+ E F F+G RLDGK +P P P
Sbjct: 199 EPERQIQHEES-AEGEADHGGYAGELGFRAFSGSGNRLDGKKKGVEPSPSP 248
>UNIPROTKB|Q92890 [details] [associations]
symbol:UFD1L "Ubiquitin fusion degradation protein 1
homolog" species:9606 "Homo sapiens" [GO:0005102 "receptor binding"
evidence=IEA] [GO:0032403 "protein complex binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0043161 "proteasomal ubiquitin-dependent protein
catabolic process" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0001501 "skeletal system development"
evidence=TAS] [GO:0004843 "ubiquitin-specific protease activity"
evidence=TAS] [GO:0006511 "ubiquitin-dependent protein catabolic
process" evidence=TAS] InterPro:IPR004854 Pfam:PF03152
UniPathway:UPA00144 GO:GO:0005829 GO:GO:0005634 GO:GO:0005737
GO:GO:0043161 GO:GO:0001501 GO:GO:0006511 Orphanet:567
GO:GO:0004843 EMBL:AC000087 eggNOG:COG5140 HOGENOM:HOG000212737
KO:K14016 PANTHER:PTHR12555 EMBL:U64444 EMBL:AF141201 EMBL:CR456607
EMBL:AK225877 EMBL:AC000068 EMBL:BC001049 EMBL:BC005087
IPI:IPI00218292 IPI:IPI00655754 IPI:IPI00852988
RefSeq:NP_001030324.2 RefSeq:NP_005650.2 UniGene:Hs.474213 PDB:2YUJ
PDBsum:2YUJ ProteinModelPortal:Q92890 SMR:Q92890 DIP:DIP-45954N
IntAct:Q92890 MINT:MINT-2837704 STRING:Q92890 PhosphoSite:Q92890
DMDM:160332310 OGP:Q92890 PaxDb:Q92890 PRIDE:Q92890 DNASU:7353
Ensembl:ENST00000263202 Ensembl:ENST00000399523 GeneID:7353
KEGG:hsa:7353 UCSC:uc002zpm.2 CTD:7353 GeneCards:GC22M019437
HGNC:HGNC:12520 HPA:HPA030287 MIM:601754 neXtProt:NX_Q92890
PharmGKB:PA37167 HOVERGEN:HBG001266 OrthoDB:EOG4H9XKW ChiTaRS:UFD1L
EvolutionaryTrace:Q92890 GenomeRNAi:7353 NextBio:28788
ArrayExpress:Q92890 Bgee:Q92890 CleanEx:HS_UFD1L
Genevestigator:Q92890 Uniprot:Q92890
Length = 307
Score = 621 (223.7 bits), Expect = 1.2e-60, P = 1.2e-60
Identities = 118/231 (51%), Positives = 157/231 (67%)
Query: 13 FEQSYRCYPASFIEKPQ----IESGDKIIMPPSALDRLASLHIDYPMLFELRNNAAERVS 68
F YRC+ S + P +E G KIIMPPSALD+L+ L+I YPMLF+L N ++R++
Sbjct: 19 FSTQYRCFSVSMLAGPNDRSDVEKGGKIIMPPSALDQLSRLNITYPMLFKLTNKNSDRMT 78
Query: 69 HCGVLEFIAEEGMIYMPYWMMENLLLQEGDIVRVKNVTLPKGTYVKLQPHTKDFLDISNP 128
HCGVLEF+A+EG+ Y+P+WMM+NLLL+EG +V+V++V L TY K QP + DFLDI+NP
Sbjct: 79 HCGVLEFVADEGICYLPHWMMQNLLLEEGGLVQVESVNLQVATYSKFQPQSPDFLDITNP 138
Query: 129 KAILETTLRNYSCLTTGDSIMVAYNNKKYYIDIIETKPSNAISIIETDCEVDFAPPLDYK 188
KA+LE LRN++CLTTGD I + YN K Y + ++ETKP A+SIIE D VDF PL YK
Sbjct: 139 KAVLENALRNFACLTTGDVIAINYNEKIYELRVMETKPDKAVSIIECDMNVDFDAPLGYK 198
Query: 189 EPEKPIASASSRATAKAEEASVETEPKFSPFTGVARRLDGKPLTYQPPPVP 239
EPE+ + S +A+ + E F F+G RLDGK +P P P
Sbjct: 199 EPERQVQHEES-TEGEADHSGYAGELGFRAFSGSGNRLDGKKKGVEPSPSP 248
>UNIPROTKB|F1NVD8 [details] [associations]
symbol:UFD1L "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0006511 "ubiquitin-dependent protein catabolic process"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR004854 Pfam:PF03152 GO:GO:0005737 GO:GO:0006511
GeneTree:ENSGT00390000002408 PANTHER:PTHR12555 OMA:IRNSRPQ
EMBL:AADN02034776 IPI:IPI00589702 Ensembl:ENSGALT00000034831
Uniprot:F1NVD8
Length = 307
Score = 613 (220.8 bits), Expect = 8.1e-60, P = 8.1e-60
Identities = 116/231 (50%), Positives = 157/231 (67%)
Query: 13 FEQSYRCYPASFIEKPQ----IESGDKIIMPPSALDRLASLHIDYPMLFELRNNAAERVS 68
F YRC+ S + P +E G KIIMPPSALD+L+ L+I YPMLF+L N ++R++
Sbjct: 19 FSTQYRCFSVSMLAGPNDRSDVEKGGKIIMPPSALDQLSRLNITYPMLFKLTNKNSDRMT 78
Query: 69 HCGVLEFIAEEGMIYMPYWMMENLLLQEGDIVRVKNVTLPKGTYVKLQPHTKDFLDISNP 128
HCGVLEF+A+EG+ Y+P+WMM+NLLL+EG +V+V++V L TY K QP + DFLDI+NP
Sbjct: 79 HCGVLEFVADEGICYLPHWMMQNLLLEEGGLVQVESVNLQVATYSKFQPQSPDFLDITNP 138
Query: 129 KAILETTLRNYSCLTTGDSIMVAYNNKKYYIDIIETKPSNAISIIETDCEVDFAPPLDYK 188
KA+LE LR+++CLTTGD I + YN K Y + ++ETKP A+SIIE D VDF PL YK
Sbjct: 139 KAVLENALRSFACLTTGDVIAINYNEKIYELRVMETKPDKAVSIIECDMNVDFDAPLGYK 198
Query: 189 EPEKPIASASSRATAKAEEASVETEPKFSPFTGVARRLDGKPLTYQPPPVP 239
EPE+ A +A+ + ++ F F+G RLDGK +P P P
Sbjct: 199 EPERS-AQHEETTDVEADHSGYVSDVGFRAFSGSGNRLDGKKKGVEPSPSP 248
>UNIPROTKB|F1PAI5 [details] [associations]
symbol:UFD1L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006511 "ubiquitin-dependent protein
catabolic process" evidence=IEA] InterPro:IPR004854 Pfam:PF03152
GO:GO:0006511 GeneTree:ENSGT00390000002408 PANTHER:PTHR12555
OMA:IRNSRPQ EMBL:AAEX03014865 EMBL:AAEX03014866
Ensembl:ENSCAFT00000023194 Uniprot:F1PAI5
Length = 310
Score = 604 (217.7 bits), Expect = 7.3e-59, P = 7.3e-59
Identities = 119/235 (50%), Positives = 159/235 (67%)
Query: 13 FEQSYRCYPASFIEKPQ----IESGDKIIMPPSALDRLASLHIDYPMLFELRNNAAERVS 68
F YRC+ S + P +E G KIIMPPSALD+L+ L+I YPMLF+L N ++R++
Sbjct: 18 FSTQYRCFSVSMLAGPNDRSDVEKGGKIIMPPSALDQLSRLNITYPMLFKLTNKNSDRMT 77
Query: 69 HCGVLEFIAEEGMIYMPYW-MMENLLLQEGDIVRVKNVTLPKGTYVKLQPHTKDFLDISN 127
HCGVLEF+A+EG+ Y+P+W MM+NLLL+EG +V+V++V L TY K QP + DFLDI+N
Sbjct: 78 HCGVLEFVADEGICYLPHWWMMQNLLLEEGGLVQVESVNLQVATYSKFQPQSPDFLDITN 137
Query: 128 PKAILETTLRNYSCLTTGDSIMVAYNNKKYYIDIIETKPSNAISIIETDC---EVDFAPP 184
PKA+LE LRN++CLTTGD I + YN K Y + ++ETKP A+SIIE D +VDF P
Sbjct: 138 PKAVLENALRNFACLTTGDVIAINYNEKIYELRVMETKPDKAVSIIECDMNGPKVDFDAP 197
Query: 185 LDYKEPEKPIASASSRATAKAEEASVETEPKFSPFTGVARRLDGKPLTYQPPPVP 239
L YKEPE+ + S A +A+ + E F F+G RLDGK +P P P
Sbjct: 198 LGYKEPERQVQHEES-AEGEADHSGYAGELGFRAFSGSGNRLDGKKKGVEPSPSP 251
>FB|FBgn0036136 [details] [associations]
symbol:Ufd1-like "Ubiquitin fusion-degradation 1-like"
species:7227 "Drosophila melanogaster" [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=IMP;NAS]
[GO:0006508 "proteolysis" evidence=IMP] [GO:0032436 "positive
regulation of proteasomal ubiquitin-dependent protein catabolic
process" evidence=IMP] [GO:0000502 "proteasome complex"
evidence=NAS] InterPro:IPR004854 Pfam:PF03152 EMBL:AE014296
GO:GO:0000502 GO:GO:0006511 GO:GO:0032436 eggNOG:COG5140
GeneTree:ENSGT00390000002408 KO:K14016 PANTHER:PTHR12555
EMBL:AF228282 EMBL:AF228283 EMBL:AY060735 RefSeq:NP_524023.1
UniGene:Dm.927 ProteinModelPortal:Q9VTF9 SMR:Q9VTF9 DIP:DIP-21844N
IntAct:Q9VTF9 MINT:MINT-755529 STRING:Q9VTF9 PaxDb:Q9VTF9
PRIDE:Q9VTF9 EnsemblMetazoa:FBtr0076223 GeneID:39254
KEGG:dme:Dmel_CG6233 CTD:39254 FlyBase:FBgn0036136
InParanoid:Q9VTF9 OMA:YKCFSVS OrthoDB:EOG463XTR PhylomeDB:Q9VTF9
GenomeRNAi:39254 NextBio:812728 Bgee:Q9VTF9 GermOnline:CG6233
Uniprot:Q9VTF9
Length = 316
Score = 577 (208.2 bits), Expect = 5.3e-56, P = 5.3e-56
Identities = 118/243 (48%), Positives = 155/243 (63%)
Query: 1 MF-FDGYGY---HGTSFEQSYRCYPASFI---EKPQIESGDKIIMPPSALDRLASLHIDY 53
MF F G+ G +F +Y+C+ S + E+ +E G KIIMPPSALD L L+++Y
Sbjct: 1 MFHFSGFNMMFPEGRNFHANYKCFSVSMLPGNERTDVEKGGKIIMPPSALDTLTRLNVEY 60
Query: 54 PMLFELRNNAAERVSHCGVLEFIAEEGMIYMPYWMMENLLLQEGDIVRVKNVTLPKGTYV 113
PMLF+L N R SH GVLEF+A+EG Y+P+WMMENLLL EGDI+ +++V+LP T+
Sbjct: 61 PMLFKLTNVKKSRSSHAGVLEFVADEGKCYLPHWMMENLLLGEGDILNIESVSLPVATFS 120
Query: 114 KLQPHTKDFLDISNPKAILETTLRNYSCLTTGDSIMVAYNNKKYYIDIIETKPSNAISII 173
K QPH+ DFLDI+NPKA+LE LRN++CLT GD I + YN K Y + ++ETKP NA+SII
Sbjct: 121 KFQPHSTDFLDITNPKAVLENALRNFACLTRGDVIAIKYNKKVYELCVLETKPGNAVSII 180
Query: 174 ETDCEVDFAPPLDYKEPEKPIASASSR----ATAKAEEASVET---EPKFSPFTGVARRL 226
E D V+F P+ YK+ + AS S + T E A E F G RL
Sbjct: 181 ECDMNVEFEAPVGYKDHSETQASGSGQQGAAGTVGGEIAGATNAILEEVVETFKGSGVRL 240
Query: 227 DGK 229
DGK
Sbjct: 241 DGK 243
>UNIPROTKB|Q0P568 [details] [associations]
symbol:UFD1L "Ubiquitin fusion degradation 1 like"
species:9913 "Bos taurus" [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006511 "ubiquitin-dependent protein catabolic process"
evidence=IEA] InterPro:IPR004854 Pfam:PF03152 GO:GO:0005737
GO:GO:0006511 eggNOG:COG5140 GeneTree:ENSGT00390000002408
HOGENOM:HOG000212737 KO:K14016 PANTHER:PTHR12555 CTD:7353
HOVERGEN:HBG001266 OrthoDB:EOG4H9XKW EMBL:DAAA02045760
EMBL:BC120441 IPI:IPI00907531 RefSeq:NP_001068768.1
UniGene:Bt.11225 SMR:Q0P568 STRING:Q0P568
Ensembl:ENSBTAT00000056937 GeneID:507124 KEGG:bta:507124
OMA:AISIIEC NextBio:20867911 Uniprot:Q0P568
Length = 231
Score = 576 (207.8 bits), Expect = 6.8e-56, P = 6.8e-56
Identities = 116/223 (52%), Positives = 152/223 (68%)
Query: 13 FEQSYRCYPASFIEKPQ----IESGDKIIMPPSALDRLASLHIDYPMLFELRNNAAERVS 68
F YRC+ S + P +E G KIIMPPSALD+L+ L+I YPMLF+L N ++RV+
Sbjct: 19 FSTQYRCFSVSMLAGPNDRSDVEKGGKIIMPPSALDQLSRLNITYPMLFKLTNKNSDRVT 78
Query: 69 HCGVLEFIAEEGMIYMPYWMMENLLLQEGDIVRVKNVTLPKGTYVKLQPHTKDFLDISNP 128
HCGVLEF+A+EG+ Y+P+WMM+NLLL+EG +V+V++V L TY K QP + DFLDI+NP
Sbjct: 79 HCGVLEFVADEGICYLPHWMMQNLLLEEGGLVQVESVNLQVATYSKFQPQSPDFLDITNP 138
Query: 129 KAILETTLRNYSCLTTGDSIMVAYNNKKYYIDIIETKPSNAISIIETDCEVDFAPPLDYK 188
KA+LE LRN++CLTTGD I + YN K Y + ++ETKP A+SIIE D VDF PL YK
Sbjct: 139 KAVLENALRNFACLTTGDVIAINYNEKIYELRVMETKPDKAVSIIECDMNVDFDAPLGYK 198
Query: 189 EPEKPIASASSRATAKAEEASVETEPKFSPFTG-VARRLDGKP 230
EPE+ A+ EE S E E S +TG + R+ P
Sbjct: 199 EPERQ---------AQHEE-SAEGETDHSGYTGELGFRVSAAP 231
>UNIPROTKB|A6NJ11 [details] [associations]
symbol:UFD1L "Ubiquitin fusion degradation protein 1
homolog" species:9606 "Homo sapiens" [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=IEA]
InterPro:IPR004854 Pfam:PF03152 GO:GO:0006511 EMBL:AC000087
HOGENOM:HOG000212737 PANTHER:PTHR12555 EMBL:AC000068
HGNC:HGNC:12520 HOVERGEN:HBG001266 ChiTaRS:UFD1L IPI:IPI00654779
ProteinModelPortal:A6NJ11 SMR:A6NJ11 STRING:A6NJ11 PRIDE:A6NJ11
Ensembl:ENST00000360834 ArrayExpress:A6NJ11 Bgee:A6NJ11
Uniprot:A6NJ11
Length = 296
Score = 545 (196.9 bits), Expect = 1.3e-52, P = 1.3e-52
Identities = 107/227 (47%), Positives = 145/227 (63%)
Query: 13 FEQSYRCYPASFIEKPQIESGDKIIMPPSALDRLASLHIDYPMLFELRNNAAERVSHCGV 72
F YRC+ S + P D+ + RL +I YPMLF+L N ++R++HCGV
Sbjct: 19 FSTQYRCFSVSMLAGPN----DRSDVEKGGKSRL---NITYPMLFKLTNKNSDRMTHCGV 71
Query: 73 LEFIAEEGMIYMPYWMMENLLLQEGDIVRVKNVTLPKGTYVKLQPHTKDFLDISNPKAIL 132
LEF+A+EG+ Y+P+WMM+NLLL+EG +V+V++V L TY K QP + DFLDI+NPKA+L
Sbjct: 72 LEFVADEGICYLPHWMMQNLLLEEGGLVQVESVNLQVATYSKFQPQSPDFLDITNPKAVL 131
Query: 133 ETTLRNYSCLTTGDSIMVAYNNKKYYIDIIETKPSNAISIIETDCEVDFAPPLDYKEPEK 192
E LRN++CLTTGD I + YN K Y + ++ETKP A+SIIE D VDF PL YKEPE+
Sbjct: 132 ENALRNFACLTTGDVIAINYNEKIYELRVMETKPDKAVSIIECDMNVDFDAPLGYKEPER 191
Query: 193 PIASASSRATAKAEEASVETEPKFSPFTGVARRLDGKPLTYQPPPVP 239
+ S +A+ + E F F+G RLDGK +P P P
Sbjct: 192 QVQHEES-TEGEADHSGYAGELGFRAFSGSGNRLDGKKKGVEPSPSP 237
>GENEDB_PFALCIPARUM|PF14_0178 [details] [associations]
symbol:PF14_0178 "hypothetical protein"
species:5833 "Plasmodium falciparum" [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR004854 Pfam:PF03152
EMBL:AE014187 GO:GO:0006511 GenomeReviews:AE014187_GR KO:K14016
PANTHER:PTHR12555 RefSeq:XP_001348351.2 ProteinModelPortal:Q8ILR6
MINT:MINT-1732927 PRIDE:Q8ILR6 EnsemblProtists:PF14_0178:mRNA
GeneID:811759 KEGG:pfa:PF14_0178 EuPathDB:PlasmoDB:PF3D7_1418000
ProtClustDB:CLSZ2428901 Uniprot:Q8ILR6
Length = 282
Score = 544 (196.6 bits), Expect = 1.7e-52, P = 1.7e-52
Identities = 109/217 (50%), Positives = 151/217 (69%)
Query: 13 FEQSYRCYPASFIEKPQIESGDKIIMPPSALDRLASLHIDYPMLFELRNNAAERVSHCGV 72
F++ Y CYP SFI K +E+G+KII+P +AL+ LA HI +PMLFE+ N ++ +H GV
Sbjct: 22 FQEEYTCYPVSFIGKDDMENGNKIILPQTALNALARRHISWPMLFEVSNPYTDKRTHSGV 81
Query: 73 LEFIAEEGMIYMPYWMMENLLLQEGDIVRVKNVTLPKGTYVKLQPHTKDFLDISNPKAIL 132
LEFI++EG +MPYWMM+ L L+EGDIVRV +V+LPKGT+VKL+P +KDF+++SN +A+L
Sbjct: 82 LEFISDEGTCHMPYWMMQQLNLKEGDIVRVTSVSLPKGTFVKLKPCSKDFMELSNHRAVL 141
Query: 133 ETTLRNYSCLTTGDSIMVAYNNKKYYIDIIETKPSNAISIIETDCEVDFAPPLDYKEPEK 192
ET LRNY+ LT GD+I++ Y K Y I I++ KP+ A +IIETD EV+F P+D+ EP +
Sbjct: 142 ETALRNYATLTIGDNIVIHYLGKTYEIKIVDLKPAFACTIIETDVEVEFEEPIDHSEPVQ 201
Query: 193 PIASASSRATAKAEEASVETEPKFSPFTGVARRLDGK 229
+ E E E KF G +R DGK
Sbjct: 202 YVT-----------EIVPEEENKFK---GKGQRTDGK 224
>UNIPROTKB|Q8ILR6 [details] [associations]
symbol:UFD1 "Ubiquitin fusion degradation protein UFD1,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR004854 Pfam:PF03152
EMBL:AE014187 GO:GO:0006511 GenomeReviews:AE014187_GR KO:K14016
PANTHER:PTHR12555 RefSeq:XP_001348351.2 ProteinModelPortal:Q8ILR6
MINT:MINT-1732927 PRIDE:Q8ILR6 EnsemblProtists:PF14_0178:mRNA
GeneID:811759 KEGG:pfa:PF14_0178 EuPathDB:PlasmoDB:PF3D7_1418000
ProtClustDB:CLSZ2428901 Uniprot:Q8ILR6
Length = 282
Score = 544 (196.6 bits), Expect = 1.7e-52, P = 1.7e-52
Identities = 109/217 (50%), Positives = 151/217 (69%)
Query: 13 FEQSYRCYPASFIEKPQIESGDKIIMPPSALDRLASLHIDYPMLFELRNNAAERVSHCGV 72
F++ Y CYP SFI K +E+G+KII+P +AL+ LA HI +PMLFE+ N ++ +H GV
Sbjct: 22 FQEEYTCYPVSFIGKDDMENGNKIILPQTALNALARRHISWPMLFEVSNPYTDKRTHSGV 81
Query: 73 LEFIAEEGMIYMPYWMMENLLLQEGDIVRVKNVTLPKGTYVKLQPHTKDFLDISNPKAIL 132
LEFI++EG +MPYWMM+ L L+EGDIVRV +V+LPKGT+VKL+P +KDF+++SN +A+L
Sbjct: 82 LEFISDEGTCHMPYWMMQQLNLKEGDIVRVTSVSLPKGTFVKLKPCSKDFMELSNHRAVL 141
Query: 133 ETTLRNYSCLTTGDSIMVAYNNKKYYIDIIETKPSNAISIIETDCEVDFAPPLDYKEPEK 192
ET LRNY+ LT GD+I++ Y K Y I I++ KP+ A +IIETD EV+F P+D+ EP +
Sbjct: 142 ETALRNYATLTIGDNIVIHYLGKTYEIKIVDLKPAFACTIIETDVEVEFEEPIDHSEPVQ 201
Query: 193 PIASASSRATAKAEEASVETEPKFSPFTGVARRLDGK 229
+ E E E KF G +R DGK
Sbjct: 202 YVT-----------EIVPEEENKFK---GKGQRTDGK 224
>POMBASE|SPBC16A3.09c [details] [associations]
symbol:ufd1 "Cdc48-Ufd1-Npl4 complex subunit Ufd1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003674
"molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005783 "endoplasmic reticulum" evidence=ISO]
[GO:0005829 "cytosol" evidence=IDA] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=ISO]
[GO:0030433 "ER-associated protein catabolic process" evidence=ISS]
[GO:0033554 "cellular response to stress" evidence=IEP] [GO:0034098
"Cdc48p-Npl4p-Ufd1p AAA ATPase complex" evidence=ISO]
InterPro:IPR004854 Pfam:PF03152 PomBase:SPBC16A3.09c GO:GO:0005829
GO:GO:0005634 GO:GO:0033554 EMBL:CU329671 GenomeReviews:CU329671_GR
GO:GO:0030433 GO:GO:0034098 eggNOG:COG5140 HOGENOM:HOG000212737
KO:K14016 PANTHER:PTHR12555 EMBL:AJ005825 EMBL:AJ005824
EMBL:AF034137 PIR:T43554 PIR:T43667 RefSeq:NP_596780.1
ProteinModelPortal:O42915 SMR:O42915 STRING:O42915
EnsemblFungi:SPBC16A3.09c.1 GeneID:2539623 KEGG:spo:SPBC16A3.09c
OMA:ARRNITW OrthoDB:EOG4BP4N3 NextBio:20800779 Uniprot:O42915
Length = 342
Score = 509 (184.2 bits), Expect = 8.5e-49, P = 8.5e-49
Identities = 103/249 (41%), Positives = 155/249 (62%)
Query: 13 FEQSYRCYPASFI---EKPQIESGDKIIMPPSALDRLASLHIDYPMLFELRNNAAERVSH 69
F+ YRCYP + I E+P + G K+I+PPSAL++L+ L++ YPMLF+ N AAE+ +H
Sbjct: 32 FDTRYRCYPVAMIPGEERPNVNYGGKVILPPSALEKLSRLNVSYPMLFDFENEAAEKKTH 91
Query: 70 CGVLEFIAEEGMIYMPYWMMENLLLQEGDIVRVKNVTLPKGTYVKLQPHTKDFLDISNPK 129
GVLEFIAEEG +Y+PYWMM L L+ GD+VRV N + +G+YVKLQP + +FLDI++ +
Sbjct: 92 GGVLEFIAEEGRVYLPYWMMTTLSLEPGDLVRVINTDIAQGSYVKLQPQSVNFLDITDHR 151
Query: 130 AILETTLRNYSCLTTGDSIMVAYNNKKYYIDIIETKPSNA---ISIIETDCEVDFAPPLD 186
A+LE LRN+S LT D + YN++ Y I +I+ +P ++ +S++ETD VDF PP+
Sbjct: 152 AVLENALRNFSTLTKSDIFEILYNDQVYQIKVIDVQPDDSRHVVSVVETDLVVDFDPPIG 211
Query: 187 YKEP-----EKPIASASSRATAKAEEASVETEPKFSPFTGVARRLDGKPLTYQPPPVPSL 241
Y+E ++ IA K + + + G +L+GK + + P + L
Sbjct: 212 YEESLQKNKQQNIAGVQGTMVTKIGYDELVRQGDSNLMKGTGTKLNGKEVA-EVPKINLL 270
Query: 242 G-SKDKQPA 249
K + PA
Sbjct: 271 DVEKQECPA 279
>SGD|S000003280 [details] [associations]
symbol:UFD1 "Substrate-recruiting cofactor of the
Cdc48p-Npl4p-Ufd1p segregase" species:4932 "Saccharomyces
cerevisiae" [GO:0071712 "ER-associated misfolded protein catabolic
process" evidence=IMP] [GO:0006511 "ubiquitin-dependent protein
catabolic process" evidence=IEA] [GO:0030433 "ER-associated protein
catabolic process" evidence=IMP] [GO:0030970 "retrograde protein
transport, ER to cytosol" evidence=IMP] [GO:1900182 "positive
regulation of protein localization to nucleus" evidence=IMP]
[GO:0034098 "Cdc48p-Npl4p-Ufd1p AAA ATPase complex" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0043161 "proteasomal
ubiquitin-dependent protein catabolic process" evidence=IMP]
[GO:0043130 "ubiquitin binding" evidence=IDA] [GO:0031593
"polyubiquitin binding" evidence=IDA] [GO:0071629
"cytoplasm-associated proteasomal ubiquitin-dependent protein
catabolic process" evidence=IMP] InterPro:IPR004854 Pfam:PF03152
SGD:S000003280 GO:GO:0005634 EMBL:BK006941 GO:GO:0031593
GO:GO:0034098 GO:GO:0030970 GO:GO:0071629 GO:GO:0071712
GO:GO:1900182 EMBL:DQ115391 EMBL:Z72833 eggNOG:COG5140
GeneTree:ENSGT00390000002408 HOGENOM:HOG000212737 KO:K14016
PANTHER:PTHR12555 OrthoDB:EOG4BP4N3 EMBL:U22153 EMBL:U17264
EMBL:AY692806 PIR:S59814 RefSeq:NP_011562.1 PDB:1ZC1 PDBsum:1ZC1
ProteinModelPortal:P53044 SMR:P53044 DIP:DIP-1476N IntAct:P53044
MINT:MINT-393265 STRING:P53044 PaxDb:P53044 PeptideAtlas:P53044
EnsemblFungi:YGR048W GeneID:852939 KEGG:sce:YGR048W CYGD:YGR048w
OMA:RCYPIAM EvolutionaryTrace:P53044 NextBio:972678
Genevestigator:P53044 GermOnline:YGR048W Uniprot:P53044
Length = 361
Score = 489 (177.2 bits), Expect = 8.7e-49, Sum P(2) = 8.7e-49
Identities = 95/187 (50%), Positives = 128/187 (68%)
Query: 12 SFEQSYRCYPASF----IEKPQIESGDKIIMPPSALDRLASLHIDYPMLFELRNNAAERV 67
+FE+ +RCYP + I K G KI +PPSAL +L+ L+I YPMLF+L N RV
Sbjct: 20 TFEEFFRCYPIAMMNDRIRKDDANFGGKIFLPPSALSKLSMLNIRYPMLFKLTANETGRV 79
Query: 68 SHCGVLEFIAEEGMIYMPYWMMENLLLQEGDIVRVKNVTLPKGTYVKLQPHTKDFLDISN 127
+H GVLEFIAEEG +Y+P WMME L +Q G ++++ + +P G +VKL+P + DFLDIS+
Sbjct: 80 THGGVLEFIAEEGRVYLPQWMMETLGIQPGSLLQISSTDVPLGQFVKLEPQSVDFLDISD 139
Query: 128 PKAILETTLRNYSCLTTGDSIMVAYNNKKYYIDIIETKP---SNAISIIETDCEVDFAPP 184
PKA+LE LRN+S LT D I ++YN K + I I+E KP S +I +IETD DFAPP
Sbjct: 140 PKAVLENVLRNFSTLTVDDVIEISYNGKTFKIKILEVKPESSSKSICVIETDLVTDFAPP 199
Query: 185 LDYKEPE 191
+ Y EP+
Sbjct: 200 VGYVEPD 206
Score = 37 (18.1 bits), Expect = 8.7e-49, Sum P(2) = 8.7e-49
Identities = 22/78 (28%), Positives = 32/78 (41%)
Query: 215 KFSPFTGVARRLDGKPLTYQPPPVPSLGSKDKQPATSNGTGQPSAGSTSQNAARQSQGKL 274
K S F G + + GK P P KD + T +G +P+ + G+L
Sbjct: 254 KLSKFVGQGQNISGKA----PKAEPKQDIKDMK-ITFDG--EPAKLDLPE-------GQL 299
Query: 275 VFGSNASLHPKETQKPVA 292
FG L PKE ++ A
Sbjct: 300 FFGFPMVL-PKEDEESAA 316
>UNIPROTKB|G4NAF1 [details] [associations]
symbol:MGG_03175 "Ubiquitin fusion degradation protein 1"
species:242507 "Magnaporthe oryzae 70-15" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR004854 Pfam:PF03152 GO:GO:0006511
EMBL:CM001234 KO:K14016 PANTHER:PTHR12555 RefSeq:XP_003716815.1
ProteinModelPortal:G4NAF1 SMR:G4NAF1 EnsemblFungi:MGG_03175T0
GeneID:2677027 KEGG:mgr:MGG_03175 Uniprot:G4NAF1
Length = 379
Score = 467 (169.5 bits), Expect = 1.2e-47, Sum P(2) = 1.2e-47
Identities = 87/199 (43%), Positives = 131/199 (65%)
Query: 13 FEQSYRCYPASFI---EKPQIESGDKIIMPPSALDRLASLHIDYPMLFELRNNAAERVSH 69
F++ YRCYP + E+P++ G KII+PPSAL++++ LH+ +P+L EL N ++ +H
Sbjct: 17 FDEYYRCYPMIMVPGAERPELNHGSKIILPPSALEKVSKLHVQWPLLMELINGENDKHTH 76
Query: 70 CGVLEFIAEEGMIYMPYWMMENLLLQEGDIVRVKNVTLPKGTYVKLQPHTKDFLDISNPK 129
GVLEF+AEEG Y+P WMM+ L L GD++++K+ +L VKLQP + FLDIS+P+
Sbjct: 77 SGVLEFVAEEGRAYLPQWMMQTLQLDVGDMIQIKSTSLELARMVKLQPQSAKFLDISDPR 136
Query: 130 AILETTLRNYSCLTTGDSIMVAYNNKKYYIDIIETKPSNA---ISIIETDCEVDFAPPLD 186
A+LE RN++ LT GD YN+ Y + +++ KP +S+IETD VDFA P+
Sbjct: 137 AVLEKAFRNFATLTKGDVFSFEYNDDVYEMAVLDVKPETTKMGVSMIETDVSVDFAAPVG 196
Query: 187 YKEPEKPIASASSRATAKA 205
Y EPE+ A S +T ++
Sbjct: 197 YVEPERQ-AKGSGTSTPRS 214
Score = 48 (22.0 bits), Expect = 1.2e-47, Sum P(2) = 1.2e-47
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 230 PLTYQPPPVPSLGSKDKQPATSNGTGQPSAGST-SQNAARQS 270
P+ Y P + GS P ++ G G P+ G SQ Q+
Sbjct: 194 PVGYVEPERQAKGSGTSTPRSTRGGGLPAGGLLHSQGGMAQA 235
Score = 40 (19.1 bits), Expect = 8.6e-47, Sum P(2) = 8.6e-47
Identities = 12/29 (41%), Positives = 14/29 (48%)
Query: 201 ATAKAEEASVETEPKFSPFTGVARRLDGK 229
A K +E P+ P G RRLDGK
Sbjct: 352 AKRKGDENEQLPTPEKRP--GEGRRLDGK 378
>UNIPROTKB|C9IZG3 [details] [associations]
symbol:UFD1L "Ubiquitin fusion degradation protein 1
homolog" species:9606 "Homo sapiens" [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=IEA]
InterPro:IPR004854 Pfam:PF03152 GO:GO:0006511 EMBL:AC000087
HOGENOM:HOG000212737 PANTHER:PTHR12555 EMBL:AC000068
HGNC:HGNC:12520 ChiTaRS:UFD1L IPI:IPI00654779
ProteinModelPortal:C9IZG3 SMR:C9IZG3 STRING:C9IZG3
Ensembl:ENST00000421968 UCSC:uc010grq.2 ArrayExpress:C9IZG3
Bgee:C9IZG3 Uniprot:C9IZG3
Length = 190
Score = 491 (177.9 bits), Expect = 6.9e-47, P = 6.9e-47
Identities = 93/179 (51%), Positives = 124/179 (69%)
Query: 13 FEQSYRCYPASFIEKPQIESGDKIIMPPSALDRLASLHIDYPMLFELRNNAAERVSHCGV 72
F YRC+ S + P D+ + RL +I YPMLF+L N ++R++HCGV
Sbjct: 19 FSTQYRCFSVSMLAGPN----DRSDVEKGGKSRL---NITYPMLFKLTNKNSDRMTHCGV 71
Query: 73 LEFIAEEGMIYMPYWMMENLLLQEGDIVRVKNVTLPKGTYVKLQPHTKDFLDISNPKAIL 132
LEF+A+EG+ Y+P+WMM+NLLL+EG +V+V++V L TY K QP + DFLDI+NPKA+L
Sbjct: 72 LEFVADEGICYLPHWMMQNLLLEEGGLVQVESVNLQVATYSKFQPQSPDFLDITNPKAVL 131
Query: 133 ETTLRNYSCLTTGDSIMVAYNNKKYYIDIIETKPSNAISIIETDCEVDFAPPLDYKEPE 191
E LRN++CLTTGD I + YN K Y + ++ETKP A+SIIE D VDF PL YKEPE
Sbjct: 132 ENALRNFACLTTGDVIAINYNEKIYELRVMETKPDKAVSIIECDMNVDFDAPLGYKEPE 190
>CGD|CAL0002326 [details] [associations]
symbol:orf19.5833 species:5476 "Candida albicans" [GO:0034098
"Cdc48p-Npl4p-Ufd1p AAA ATPase complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0071629 "cytoplasm-associated proteasomal ubiquitin-dependent
protein catabolic process" evidence=IEA] [GO:1900182 "positive
regulation of protein localization to nucleus" evidence=IEA]
[GO:0030970 "retrograde protein transport, ER to cytosol"
evidence=IEA] [GO:0071712 "ER-associated misfolded protein
catabolic process" evidence=IEA] [GO:0031593 "polyubiquitin
binding" evidence=IEA] InterPro:IPR004854 Pfam:PF03152
CGD:CAL0002326 GO:GO:0006511 EMBL:AACQ01000088 EMBL:AACQ01000087
eggNOG:COG5140 KO:K14016 PANTHER:PTHR12555 RefSeq:XP_715308.1
RefSeq:XP_715373.1 ProteinModelPortal:Q5A0H8 SMR:Q5A0H8
STRING:Q5A0H8 GeneID:3643035 GeneID:3643074 KEGG:cal:CaO19.13255
KEGG:cal:CaO19.5833 Uniprot:Q5A0H8
Length = 363
Score = 487 (176.5 bits), Expect = 1.8e-46, P = 1.8e-46
Identities = 97/199 (48%), Positives = 127/199 (63%)
Query: 3 FDGYGYHGTSFEQSYRCYPASF----IEKPQIESGDKIIMPPSALDRLASLHIDYPMLFE 58
F G+ FE+ +RCYP + I K G KI +PPSAL++L LHI YPMLFE
Sbjct: 14 FGSSGFPSNKFEEYFRCYPIAMMPDLIRKDDANYGGKIFLPPSALNKLTMLHIRYPMLFE 73
Query: 59 LRNNAAERVSHCGVLEFIAEEGMIYMPYWMMENLLLQEGDIVRVKNVTLPKGTYVKLQPH 118
++N E+++H GVLEFIAEEG Y+P WMM L L G ++++ N L G +VK++P
Sbjct: 74 IKNEQNEKLTHSGVLEFIAEEGRTYLPQWMMNTLELTPGSLIKITNCDLNLGKFVKIEPQ 133
Query: 119 TKDFLDISNPKAILETTLRNYSCLTTGDSIMVAYNNKKYYIDIIETKP---SNAISIIET 175
+ DFLDIS+PKA+LE LR +S LT D I V YN+ Y I ++E KP S I ++ET
Sbjct: 134 SVDFLDISDPKAVLENVLRKFSTLTVNDIIEVNYNDAIYGIRVLEVKPDSTSKGICVVET 193
Query: 176 DCEVDFAPPLDYKEPE-KP 193
D E DFAP + Y EPE KP
Sbjct: 194 DLETDFAPLVGYVEPEYKP 212
>WB|WBGene00006733 [details] [associations]
symbol:ufd-1 species:6239 "Caenorhabditis elegans"
[GO:0006511 "ubiquitin-dependent protein catabolic process"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0040011 "locomotion" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0008340 "determination of
adult lifespan" evidence=IMP] [GO:0034098 "Cdc48p-Npl4p-Ufd1p AAA
ATPase complex" evidence=IPI] [GO:0071712 "ER-associated misfolded
protein catabolic process" evidence=IMP] [GO:0005634 "nucleus"
evidence=IDA] InterPro:IPR004854 Pfam:PF03152 GO:GO:0005634
GO:GO:0008340 GO:GO:0009792 GO:GO:0040007 GO:GO:0040010
GO:GO:0002119 GO:GO:0040011 GO:GO:0034098 GO:GO:0071712 EMBL:Z69635
PIR:T21108 RefSeq:NP_502348.1 ProteinModelPortal:Q19584 SMR:Q19584
DIP:DIP-26847N IntAct:Q19584 MINT:MINT-1079679 STRING:Q19584
PaxDb:Q19584 PRIDE:Q19584 EnsemblMetazoa:F19B6.2a GeneID:3565860
KEGG:cel:CELE_F19B6.2 UCSC:F19B6.2b CTD:3565860 WormBase:F19B6.2a
eggNOG:COG5140 GeneTree:ENSGT00390000002408 HOGENOM:HOG000212737
InParanoid:Q19584 KO:K14016 OMA:IDKAHLE NextBio:958135
ArrayExpress:Q19584 PANTHER:PTHR12555 Uniprot:Q19584
Length = 342
Score = 439 (159.6 bits), Expect = 2.2e-41, P = 2.2e-41
Identities = 94/213 (44%), Positives = 128/213 (60%)
Query: 29 QIESGDKIIMPPSALDRLASLHIDYPMLFELRNNAAERVSHCGVLEFIAEEGMIYMPYWM 88
+I G KI++P SAL+ L +I PMLF+L N A +RV+HCGVLEF A EG +P WM
Sbjct: 43 EINYGGKILLPSSALNLLMQYNIPMPMLFKLTNMAVQRVTHCGVLEFSAPEGQAILPLWM 102
Query: 89 MENLLLQEGDIVRVKNVTLPKGTYVKLQPHTKDFLDISNPKAILETTLRNYSCLTTGDSI 148
M+ L L +GD +R+++ TLPK T+ KL+P + +FL+I+NPKA+LE LR Y+CLT D I
Sbjct: 103 MQQLGLDDGDTIRIESATLPKATFAKLKPMSLEFLNITNPKAVLEVELRKYACLTKNDRI 162
Query: 149 MVAYNNKKYYIDIIETKPSNAISIIETDCEVDFAPPLDYKE------------PEKPIAS 196
+Y + +++ KP+N++ IIE D +DF PP Y E P P AS
Sbjct: 163 PTSYAGQTLEFLVVDLKPANSVCIIECDVNLDFDPPEGYVEQPRQVTPAVTAKPPAPDAS 222
Query: 197 ASSRATAKAEEASVETEPKFSPFTGVARRLDGK 229
A A KA + + S F G RRLDGK
Sbjct: 223 AFIGAGQKAGGSGGTGQNATSVFGGAGRRLDGK 255
>UNIPROTKB|C9JNP9 [details] [associations]
symbol:UFD1L "Ubiquitin fusion degradation protein 1
homolog" species:9606 "Homo sapiens" [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=IEA]
InterPro:IPR004854 Pfam:PF03152 GO:GO:0006511 EMBL:AC000087
HOGENOM:HOG000212737 PANTHER:PTHR12555 EMBL:AC000068
HGNC:HGNC:12520 ChiTaRS:UFD1L IPI:IPI01011883
ProteinModelPortal:C9JNP9 SMR:C9JNP9 STRING:C9JNP9
Ensembl:ENST00000447868 ArrayExpress:C9JNP9 Bgee:C9JNP9
Uniprot:C9JNP9
Length = 159
Score = 384 (140.2 bits), Expect = 1.5e-35, P = 1.5e-35
Identities = 76/152 (50%), Positives = 99/152 (65%)
Query: 88 MMENLLLQEGDIVRVKNVTLPKGTYVKLQPHTKDFLDISNPKAILETTLRNYSCLTTGDS 147
MM+NLLL+EG +V+V++V L TY K QP + DFLDI+NPKA+LE LRN++CLTTGD
Sbjct: 2 MMQNLLLEEGGLVQVESVNLQVATYSKFQPQSPDFLDITNPKAVLENALRNFACLTTGDV 61
Query: 148 IMVAYNNKKYYIDIIETKPSNAISIIETDCEVDFAPPLDYKEPEKPIASASSRATAKAEE 207
I + YN K Y + ++ETKP A+SIIE D VDF PL YKEPE+ + S +A+
Sbjct: 62 IAINYNEKIYELRVMETKPDKAVSIIECDMNVDFDAPLGYKEPERQVQHEES-TEGEADH 120
Query: 208 ASVETEPKFSPFTGVARRLDGKPLTYQPPPVP 239
+ E F F+G RLDGK +P P P
Sbjct: 121 SGYAGELGFRAFSGSGNRLDGKKKGVEPSPSP 152
>UNIPROTKB|C9J6N9 [details] [associations]
symbol:UFD1L "Ubiquitin fusion degradation protein 1
homolog" species:9606 "Homo sapiens" [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=IEA]
[GO:0005102 "receptor binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0032403 "protein complex binding"
evidence=IEA] InterPro:IPR004854 Pfam:PF03152 GO:GO:0005737
GO:GO:0006511 EMBL:AC000087 HOGENOM:HOG000212737 PANTHER:PTHR12555
EMBL:AC000068 HGNC:HGNC:12520 ChiTaRS:UFD1L IPI:IPI01010945
ProteinModelPortal:C9J6N9 SMR:C9J6N9 STRING:C9J6N9
Ensembl:ENST00000494054 ArrayExpress:C9J6N9 Bgee:C9J6N9
Uniprot:C9J6N9
Length = 136
Score = 376 (137.4 bits), Expect = 1.1e-34, P = 1.1e-34
Identities = 68/123 (55%), Positives = 93/123 (75%)
Query: 13 FEQSYRCYPASFIEKPQ----IESGDKIIMPPSALDRLASLHIDYPMLFELRNNAAERVS 68
F YRC+ S + P +E G KIIMPPSALD+L+ L+I YPMLF+L N ++R++
Sbjct: 14 FSTQYRCFSVSMLAGPNDRSDVEKGGKIIMPPSALDQLSRLNITYPMLFKLTNKNSDRMT 73
Query: 69 HCGVLEFIAEEGMIYMPYWMMENLLLQEGDIVRVKNVTLPKGTYVKLQPHTKDFLDISNP 128
HCGVLEF+A+EG+ Y+P+WMM+NLLL+EG +V+V++V L TY K QP + DFLDI+NP
Sbjct: 74 HCGVLEFVADEGICYLPHWMMQNLLLEEGGLVQVESVNLQVATYSKFQPQSPDFLDITNP 133
Query: 129 KAI 131
KA+
Sbjct: 134 KAV 136
>TAIR|locus:2130120 [details] [associations]
symbol:AT4G15420 species:3702 "Arabidopsis thaliana"
[GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006511 "ubiquitin-dependent protein catabolic
process" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR004854 InterPro:IPR015880 Pfam:PF03152 SMART:SM00355
EMBL:CP002687 GO:GO:0008270 GO:GO:0005622 GO:GO:0006511
InterPro:IPR007280 Pfam:PF04151 PANTHER:PTHR12555 EMBL:AF446353
EMBL:AY086035 EMBL:AY143927 EMBL:DQ778953 IPI:IPI00544100
RefSeq:NP_567465.1 UniGene:At.4344 UniGene:At.71880
ProteinModelPortal:Q8W1E7 SMR:Q8W1E7 STRING:Q8W1E7 PRIDE:Q8W1E7
EnsemblPlants:AT4G15420.1 GeneID:827213 KEGG:ath:AT4G15420
InParanoid:Q8W1E7 OMA:FHEPLQC ProtClustDB:PLN03086
Genevestigator:Q8W1E7 Uniprot:Q8W1E7
Length = 561
Score = 285 (105.4 bits), Expect = 2.4e-24, P = 2.4e-24
Identities = 70/190 (36%), Positives = 108/190 (56%)
Query: 32 SGDKIIMPPSALDRLASLH-IDY-PMLFELR--NNAA-ERVSHCGVLEFIAEEGMIYMPY 86
+GDKI +PPS L+ D P+ FEL ++A ++ +H GVLEF AE+G I +P
Sbjct: 90 NGDKIKLPPSCFTELSDQGAFDKGPLYFELSVVDHADNKKTTHSGVLEFTAEDGTIGLPP 149
Query: 87 WMMENLLLQEG--DI--VRVKNVTLPKGTYVKLQPHTKDFLDISNPKAILETTLRNYSCL 142
+ NL D+ V ++ + LPKG+Y KLQP F D+ N KAILET LR ++ L
Sbjct: 150 HVWSNLFSTHDPMDVPLVEIRYIRLPKGSYAKLQPDNLGFSDLPNHKAILETILRQHATL 209
Query: 143 TTGDSIMVAYNNKKYYIDIIETKPSNAISIIETDCEVDF-APPLDYKEPEKPIASASSRA 201
+ D ++V Y Y + ++E +P+ +IS++ETD EVD +P + +P + +
Sbjct: 210 SLDDVLLVNYGQVSYKLQVLELRPATSISVLETDIEVDIVSPDIVSDQPNQHVLKPLQYG 269
Query: 202 TAKAEEASVE 211
K+E +VE
Sbjct: 270 --KSESGTVE 277
>UNIPROTKB|C9J7C8 [details] [associations]
symbol:UFD1L "Ubiquitin fusion degradation protein 1
homolog" species:9606 "Homo sapiens" [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=IEA]
[GO:0005102 "receptor binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0032403 "protein complex binding"
evidence=IEA] InterPro:IPR004854 Pfam:PF03152 GO:GO:0005737
GO:GO:0006511 EMBL:AC000087 PANTHER:PTHR12555 EMBL:AC000068
HGNC:HGNC:12520 ChiTaRS:UFD1L IPI:IPI00945833
ProteinModelPortal:C9J7C8 SMR:C9J7C8 STRING:C9J7C8
Ensembl:ENST00000474226 ArrayExpress:C9J7C8 Bgee:C9J7C8
Uniprot:C9J7C8
Length = 69
Score = 227 (85.0 bits), Expect = 6.5e-19, P = 6.5e-19
Identities = 39/69 (56%), Positives = 56/69 (81%)
Query: 55 MLFELRNNAAERVSHCGVLEFIAEEGMIYMPYWMMENLLLQEGDIVRVKNVTLPKGTYVK 114
MLF+L N ++R++HCGVLEF+A+EG+ Y+P+WMM+NLLL+EG +V+V++V L TY K
Sbjct: 1 MLFKLTNKNSDRMTHCGVLEFVADEGICYLPHWMMQNLLLEEGGLVQVESVNLQVATYSK 60
Query: 115 LQPHTKDFL 123
QP + DFL
Sbjct: 61 FQPQSPDFL 69
>ASPGD|ASPL0000066677 [details] [associations]
symbol:AN10877 species:162425 "Emericella nidulans"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0006511 "ubiquitin-dependent
protein catabolic process" evidence=IEA] InterPro:IPR004854
Pfam:PF03152 EMBL:BN001304 GO:GO:0006511 PANTHER:PTHR12555
EnsemblFungi:CADANIAT00000493 OMA:GIREFSA Uniprot:C8VCB5
Length = 756
Score = 187 (70.9 bits), Expect = 2.9e-13, Sum P(2) = 2.9e-13
Identities = 59/165 (35%), Positives = 88/165 (53%)
Query: 51 IDYPMLFELRNNAAERVSHCGVLEFIAEEGMIYMPYWMMENL-LLQEGD-----IVRVKN 104
+ +P+ F L N RV + G+ EF A E I + + E L + QEG IV V
Sbjct: 87 LPHPLTFRLVNTQNSRVIYAGIREFSARENEIGLSASLREALDISQEGGDADAPIVTVHA 146
Query: 105 VTLPKGTYVKLQPHTKDFLDISNPKAILETTLR-NYSCLTTGDSIMVAYNNK---KYYID 160
LPKGTYV+L+P + D + KA+LE LR NY+ LTTG+++ V + K+ +D
Sbjct: 147 EQLPKGTYVRLRPLEAGY-DTDDWKALLERHLRSNYTTLTTGETLTVPRGQEESFKFLVD 205
Query: 161 IIETKPSNAISIIETDCEVDFAPPLDYKEPE---KPIASASSRAT 202
+E + I +++TD EVD + + E K +A AS RA+
Sbjct: 206 KVEPQ-GEGICVVDTDLEVDIVALTEEQARETLHKRLARAS-RAS 248
Score = 54 (24.1 bits), Expect = 2.9e-13, Sum P(2) = 2.9e-13
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 14 EQSYRCYPASF-IEKPQIE---SGDKIIMPPSALDRL 46
EQ + + F + PQ SGD+II+P SAL++L
Sbjct: 4 EQDQLRWSSQFTVTPPQYTQKLSGDRIILPQSALEQL 40
>TAIR|locus:2116787 [details] [associations]
symbol:AT4G31880 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0009507 "chloroplast"
evidence=IDA] [GO:0005829 "cytosol" evidence=RCA;IDA] [GO:0006312
"mitotic recombination" evidence=RCA] [GO:0007062 "sister chromatid
cohesion" evidence=RCA] [GO:0009560 "embryo sac egg cell
differentiation" evidence=RCA] [GO:0009630 "gravitropism"
evidence=RCA] [GO:0031048 "chromatin silencing by small RNA"
evidence=RCA] [GO:0045132 "meiotic chromosome segregation"
evidence=RCA] GO:GO:0005829 GO:GO:0009507 EMBL:CP002687
GenomeReviews:CT486007_GR eggNOG:NOG12793 UniGene:At.31705
EMBL:BT002315 IPI:IPI00525095 RefSeq:NP_194916.2 PaxDb:Q8GUP3
PRIDE:Q8GUP3 EnsemblPlants:AT4G31880.1 GeneID:829318
KEGG:ath:AT4G31880 TAIR:At4g31880 HOGENOM:HOG000148306
InParanoid:Q8GUP3 OMA:IATEEVS PhylomeDB:Q8GUP3
ProtClustDB:CLSN2716612 Genevestigator:Q8GUP3 Uniprot:Q8GUP3
Length = 873
Score = 98 (39.6 bits), Expect = 0.00069, Sum P(2) = 0.00069
Identities = 43/141 (30%), Positives = 65/141 (46%)
Query: 153 NNKKYYIDIIETKPSNAISIIETDCEVDFAPPLDYKEPEKPIASASSRATAKAEEASVET 212
N K + I+ +K S ET V +P + + PE+ + + A K +E+S E
Sbjct: 413 NEKNKSVQILPSKTSGD----ET-ANVS-SPSMAEELPEQSVPKKT--ANQKKKESSTE- 463
Query: 213 EPKFSPFTGVA-RRLDGKPLTYQPPPVPSLGSKDKQPATSNGTGQPSAGSTSQN-AARQS 270
E K P +A + +P T +P G K + + T PS STS+ A+QS
Sbjct: 464 EVK--PSASIATEEVSEEPNTSEPQVTKKSGKKVASSSKTKPTVPPSKKSTSETKVAKQS 521
Query: 271 QGKLVFGSNA--SLHPKETQK 289
+ K+V NA S PKE +K
Sbjct: 522 EKKVVGSDNAQESTKPKEEKK 542
Score = 65 (27.9 bits), Expect = 0.00069, Sum P(2) = 0.00069
Identities = 13/24 (54%), Positives = 18/24 (75%)
Query: 25 IEKPQIESGDKIIMPPSALDRLAS 48
+E IE+G+K+I PPS+LD L S
Sbjct: 8 LENQIIEAGEKLIDPPSSLDELLS 31
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.314 0.132 0.387 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 321 305 0.00098 115 3 11 23 0.45 34
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 29
No. of states in DFA: 595 (63 KB)
Total size of DFA: 203 KB (2114 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 31.84u 0.11s 31.95t Elapsed: 00:00:02
Total cpu time: 31.85u 0.11s 31.96t Elapsed: 00:00:02
Start: Fri May 10 08:47:11 2013 End: Fri May 10 08:47:13 2013