BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020791
(321 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9ES53|UFD1_RAT Ubiquitin fusion degradation protein 1 homolog OS=Rattus norvegicus
GN=Ufd1l PE=1 SV=1
Length = 307
Score = 254 bits (648), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 119/231 (51%), Positives = 158/231 (68%), Gaps = 5/231 (2%)
Query: 13 FEQSYRCYPASFIEKPQ----IESGDKIIMPPSALDRLASLHIDYPMLFELRNNAAERVS 68
F YRC+ S + P +E G KIIMPPSALD+L+ L+I YPMLF+L N ++R++
Sbjct: 19 FSTQYRCFSVSMLAGPNDRSDVEKGGKIIMPPSALDQLSRLNITYPMLFKLTNKNSDRMT 78
Query: 69 HCGVLEFIAEEGMIYMPYWMMENLLLQEGDIVRVKNVTLPKGTYVKLQPHTKDFLDISNP 128
HCGVLEF+A+EG+ Y+P+WMM+NLLL+EG +V+V++V L TY K QP + DFLDI+NP
Sbjct: 79 HCGVLEFVADEGICYLPHWMMQNLLLEEGGLVQVESVNLQVATYSKFQPQSPDFLDITNP 138
Query: 129 KAILETTLRNYSCLTTGDSIMVAYNNKKYYIDIIETKPSNAISIIETDCEVDFAPPLDYK 188
KA+LE LRN++CLTTGD I + YN K Y + ++ETKP A+SIIE D VDF PL YK
Sbjct: 139 KAVLENALRNFACLTTGDVIAINYNEKIYELRVMETKPDKAVSIIECDMNVDFDAPLGYK 198
Query: 189 EPEKPIASASSRATAKAEEASVETEPKFSPFTGVARRLDGKPLTYQPPPVP 239
EPE+P+ S +A+ + E F F+G RLDGK +P P P
Sbjct: 199 EPERPVQHEES-IEGEADHSGYAGEVGFRAFSGSGNRLDGKKKGVEPSPSP 248
>sp|P70362|UFD1_MOUSE Ubiquitin fusion degradation protein 1 homolog OS=Mus musculus
GN=Ufd1l PE=1 SV=2
Length = 307
Score = 254 bits (648), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 119/231 (51%), Positives = 158/231 (68%), Gaps = 5/231 (2%)
Query: 13 FEQSYRCYPASFIEKPQ----IESGDKIIMPPSALDRLASLHIDYPMLFELRNNAAERVS 68
F YRC+ S + P +E G KIIMPPSALD+L+ L+I YPMLF+L N ++R++
Sbjct: 19 FSTQYRCFSVSMLAGPNDRSDVEKGGKIIMPPSALDQLSRLNITYPMLFKLTNKNSDRMT 78
Query: 69 HCGVLEFIAEEGMIYMPYWMMENLLLQEGDIVRVKNVTLPKGTYVKLQPHTKDFLDISNP 128
HCGVLEF+A+EG+ Y+P+WMM+NLLL+EG +V+V++V L TY K QP + DFLDI+NP
Sbjct: 79 HCGVLEFVADEGICYLPHWMMQNLLLEEGGLVQVESVNLQVATYSKFQPQSPDFLDITNP 138
Query: 129 KAILETTLRNYSCLTTGDSIMVAYNNKKYYIDIIETKPSNAISIIETDCEVDFAPPLDYK 188
KA+LE LRN++CLTTGD I + YN K Y + ++ETKP A+SIIE D VDF PL YK
Sbjct: 139 KAVLENALRNFACLTTGDVIAINYNEKIYELRVMETKPDKAVSIIECDMNVDFDAPLGYK 198
Query: 189 EPEKPIASASSRATAKAEEASVETEPKFSPFTGVARRLDGKPLTYQPPPVP 239
EPE+P+ S +A+ + E F F+G RLDGK +P P P
Sbjct: 199 EPERPVQHEES-IEGEADHSGYAGEVGFRAFSGSGNRLDGKKKGVEPSPSP 248
>sp|Q92890|UFD1_HUMAN Ubiquitin fusion degradation protein 1 homolog OS=Homo sapiens
GN=UFD1L PE=1 SV=3
Length = 307
Score = 251 bits (641), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 118/231 (51%), Positives = 157/231 (67%), Gaps = 5/231 (2%)
Query: 13 FEQSYRCYPASFIEKPQ----IESGDKIIMPPSALDRLASLHIDYPMLFELRNNAAERVS 68
F YRC+ S + P +E G KIIMPPSALD+L+ L+I YPMLF+L N ++R++
Sbjct: 19 FSTQYRCFSVSMLAGPNDRSDVEKGGKIIMPPSALDQLSRLNITYPMLFKLTNKNSDRMT 78
Query: 69 HCGVLEFIAEEGMIYMPYWMMENLLLQEGDIVRVKNVTLPKGTYVKLQPHTKDFLDISNP 128
HCGVLEF+A+EG+ Y+P+WMM+NLLL+EG +V+V++V L TY K QP + DFLDI+NP
Sbjct: 79 HCGVLEFVADEGICYLPHWMMQNLLLEEGGLVQVESVNLQVATYSKFQPQSPDFLDITNP 138
Query: 129 KAILETTLRNYSCLTTGDSIMVAYNNKKYYIDIIETKPSNAISIIETDCEVDFAPPLDYK 188
KA+LE LRN++CLTTGD I + YN K Y + ++ETKP A+SIIE D VDF PL YK
Sbjct: 139 KAVLENALRNFACLTTGDVIAINYNEKIYELRVMETKPDKAVSIIECDMNVDFDAPLGYK 198
Query: 189 EPEKPIASASSRATAKAEEASVETEPKFSPFTGVARRLDGKPLTYQPPPVP 239
EPE+ + S +A+ + E F F+G RLDGK +P P P
Sbjct: 199 EPERQVQHEES-TEGEADHSGYAGELGFRAFSGSGNRLDGKKKGVEPSPSP 248
>sp|Q55BK0|UFD1_DICDI Ubiquitin fusion degradation protein 1 homolog OS=Dictyostelium
discoideum GN=ufd1 PE=3 SV=1
Length = 330
Score = 241 bits (614), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 124/262 (47%), Positives = 166/262 (63%), Gaps = 34/262 (12%)
Query: 8 YHGT--SFEQSYRCYPASFI--EKPQIESGDKIIMPPSALDRLASLHIDYPMLFELRNNA 63
+HG +EQ ++ +P SF+ EK +ESG KI++PPSAL+ L+ L+I YPMLFE+ N
Sbjct: 18 HHGGPGRYEQKFKAFPISFLPKEKHSLESGGKILLPPSALNALSRLNIQYPMLFEISNPI 77
Query: 64 AERVSHCGVLEFIAEEGMIYMPYWMMENLLLQEGDIVRVKNVTLPKGTYVKLQPHTKDFL 123
+ + SHCGVLEFIAEEG+ Y+P WMM+NL L+EG+ + +KN TL KGT+VK+QP T +F+
Sbjct: 78 SGKKSHCGVLEFIAEEGICYLPLWMMQNLQLKEGEFIDIKNATLAKGTFVKIQPRTSNFI 137
Query: 124 DISNPKAILETTLRNYSCLTTGDSIMVAYNNKKYYIDIIETKPSNAISIIETDCEVDFAP 183
DISNPKA+LE +LR ++ LT D IM+ YNN KYY+ ++E KP+NAISIIE D VDFAP
Sbjct: 138 DISNPKAVLENSLRKFATLTKDDEIMIDYNNTKYYLKVVELKPANAISIIEADVSVDFAP 197
Query: 184 PLDYKE---------------PEKPIASASSRATA------------KAEEASVETEPKF 216
P+D KE P K + + +A ++ + EPKF
Sbjct: 198 PMDSKEATSPSTSSPGSHVSGPSKGLTFGPASTSAKPIPGGKKKKDESDSDSDSDDEPKF 257
Query: 217 SPFTGVARRLDGK---PLTYQP 235
F G RLDGK PL P
Sbjct: 258 KAFAGTGARLDGKVGTPLGTSP 279
>sp|Q9VTF9|UFD1_DROME Ubiquitin fusion degradation protein 1 homolog OS=Drosophila
melanogaster GN=Ufd1-like PE=2 SV=1
Length = 316
Score = 235 bits (600), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 118/243 (48%), Positives = 155/243 (63%), Gaps = 14/243 (5%)
Query: 1 MF-FDGYGY---HGTSFEQSYRCYPASFI---EKPQIESGDKIIMPPSALDRLASLHIDY 53
MF F G+ G +F +Y+C+ S + E+ +E G KIIMPPSALD L L+++Y
Sbjct: 1 MFHFSGFNMMFPEGRNFHANYKCFSVSMLPGNERTDVEKGGKIIMPPSALDTLTRLNVEY 60
Query: 54 PMLFELRNNAAERVSHCGVLEFIAEEGMIYMPYWMMENLLLQEGDIVRVKNVTLPKGTYV 113
PMLF+L N R SH GVLEF+A+EG Y+P+WMMENLLL EGDI+ +++V+LP T+
Sbjct: 61 PMLFKLTNVKKSRSSHAGVLEFVADEGKCYLPHWMMENLLLGEGDILNIESVSLPVATFS 120
Query: 114 KLQPHTKDFLDISNPKAILETTLRNYSCLTTGDSIMVAYNNKKYYIDIIETKPSNAISII 173
K QPH+ DFLDI+NPKA+LE LRN++CLT GD I + YN K Y + ++ETKP NA+SII
Sbjct: 121 KFQPHSTDFLDITNPKAVLENALRNFACLTRGDVIAIKYNKKVYELCVLETKPGNAVSII 180
Query: 174 ETDCEVDFAPPLDYKEPEKPIASASSR----ATAKAEEASVET---EPKFSPFTGVARRL 226
E D V+F P+ YK+ + AS S + T E A E F G RL
Sbjct: 181 ECDMNVEFEAPVGYKDHSETQASGSGQQGAAGTVGGEIAGATNAILEEVVETFKGSGVRL 240
Query: 227 DGK 229
DGK
Sbjct: 241 DGK 243
>sp|O42915|UFD1_SCHPO Ubiquitin fusion degradation protein 1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=ufd1 PE=2 SV=4
Length = 342
Score = 207 bits (527), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 99/234 (42%), Positives = 148/234 (63%), Gaps = 11/234 (4%)
Query: 13 FEQSYRCYPASFI---EKPQIESGDKIIMPPSALDRLASLHIDYPMLFELRNNAAERVSH 69
F+ YRCYP + I E+P + G K+I+PPSAL++L+ L++ YPMLF+ N AAE+ +H
Sbjct: 32 FDTRYRCYPVAMIPGEERPNVNYGGKVILPPSALEKLSRLNVSYPMLFDFENEAAEKKTH 91
Query: 70 CGVLEFIAEEGMIYMPYWMMENLLLQEGDIVRVKNVTLPKGTYVKLQPHTKDFLDISNPK 129
GVLEFIAEEG +Y+PYWMM L L+ GD+VRV N + +G+YVKLQP + +FLDI++ +
Sbjct: 92 GGVLEFIAEEGRVYLPYWMMTTLSLEPGDLVRVINTDIAQGSYVKLQPQSVNFLDITDHR 151
Query: 130 AILETTLRNYSCLTTGDSIMVAYNNKKYYIDIIETKPSNA---ISIIETDCEVDFAPPLD 186
A+LE LRN+S LT D + YN++ Y I +I+ +P ++ +S++ETD VDF PP+
Sbjct: 152 AVLENALRNFSTLTKSDIFEILYNDQVYQIKVIDVQPDDSRHVVSVVETDLVVDFDPPIG 211
Query: 187 YKEP-----EKPIASASSRATAKAEEASVETEPKFSPFTGVARRLDGKPLTYQP 235
Y+E ++ IA K + + + G +L+GK + P
Sbjct: 212 YEESLQKNKQQNIAGVQGTMVTKIGYDELVRQGDSNLMKGTGTKLNGKEVAEVP 265
>sp|P53044|UFD1_YEAST Ubiquitin fusion degradation protein 1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=UFD1 PE=1 SV=1
Length = 361
Score = 201 bits (511), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 95/187 (50%), Positives = 128/187 (68%), Gaps = 7/187 (3%)
Query: 12 SFEQSYRCYPASF----IEKPQIESGDKIIMPPSALDRLASLHIDYPMLFELRNNAAERV 67
+FE+ +RCYP + I K G KI +PPSAL +L+ L+I YPMLF+L N RV
Sbjct: 20 TFEEFFRCYPIAMMNDRIRKDDANFGGKIFLPPSALSKLSMLNIRYPMLFKLTANETGRV 79
Query: 68 SHCGVLEFIAEEGMIYMPYWMMENLLLQEGDIVRVKNVTLPKGTYVKLQPHTKDFLDISN 127
+H GVLEFIAEEG +Y+P WMME L +Q G ++++ + +P G +VKL+P + DFLDIS+
Sbjct: 80 THGGVLEFIAEEGRVYLPQWMMETLGIQPGSLLQISSTDVPLGQFVKLEPQSVDFLDISD 139
Query: 128 PKAILETTLRNYSCLTTGDSIMVAYNNKKYYIDIIETKP---SNAISIIETDCEVDFAPP 184
PKA+LE LRN+S LT D I ++YN K + I I+E KP S +I +IETD DFAPP
Sbjct: 140 PKAVLENVLRNFSTLTVDDVIEISYNGKTFKIKILEVKPESSSKSICVIETDLVTDFAPP 199
Query: 185 LDYKEPE 191
+ Y EP+
Sbjct: 200 VGYVEPD 206
>sp|Q19584|UFD1_CAEEL Ubiquitin fusion degradation protein 1 homolog OS=Caenorhabditis
elegans GN=ufd-1 PE=2 SV=1
Length = 342
Score = 187 bits (474), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 100/248 (40%), Positives = 141/248 (56%), Gaps = 25/248 (10%)
Query: 7 GYHGT-------SFEQSYRCYPASFI------EKPQIESGDKIIMPPSALDRLASLHIDY 53
G HG +++Q++ Y F+ + +I G KI++P SAL+ L +I
Sbjct: 8 GLHGMQMGGRVGNYDQTFVVYGPVFLPNATQSKISEINYGGKILLPSSALNLLMQYNIPM 67
Query: 54 PMLFELRNNAAERVSHCGVLEFIAEEGMIYMPYWMMENLLLQEGDIVRVKNVTLPKGTYV 113
PMLF+L N A +RV+HCGVLEF A EG +P WMM+ L L +GD +R+++ TLPK T+
Sbjct: 68 PMLFKLTNMAVQRVTHCGVLEFSAPEGQAILPLWMMQQLGLDDGDTIRIESATLPKATFA 127
Query: 114 KLQPHTKDFLDISNPKAILETTLRNYSCLTTGDSIMVAYNNKKYYIDIIETKPSNAISII 173
KL+P + +FL+I+NPKA+LE LR Y+CLT D I +Y + +++ KP+N++ II
Sbjct: 128 KLKPMSLEFLNITNPKAVLEVELRKYACLTKNDRIPTSYAGQTLEFLVVDLKPANSVCII 187
Query: 174 ETDCEVDFAPPLDYKE------------PEKPIASASSRATAKAEEASVETEPKFSPFTG 221
E D +DF PP Y E P P ASA A KA + + S F G
Sbjct: 188 ECDVNLDFDPPEGYVEQPRQVTPAVTAKPPAPDASAFIGAGQKAGGSGGTGQNATSVFGG 247
Query: 222 VARRLDGK 229
RRLDGK
Sbjct: 248 AGRRLDGK 255
>sp|P08F94|PKHD1_HUMAN Fibrocystin OS=Homo sapiens GN=PKHD1 PE=1 SV=1
Length = 4074
Score = 33.9 bits (76), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 101 RVKNVTLPKGTYVKLQPHTKDFLDISNPKAILETTLRNYSCLTTGDSIMVAYNNKKYYID 160
R+ NVT+ +G Y + P ++ NP ++ T RN S + G+++++ Y D
Sbjct: 1081 RIVNVTVIRGDYSAVLPRAFTYVSSLNP--VIVTLSRNISNIAGGETLVIGVARLMNYTD 1138
Query: 161 I-IETKPSNAISIIET 175
+ +E +A++ + T
Sbjct: 1139 LDVEVHVQDALAPVHT 1154
>sp|Q24168|ORC2_DROME Origin recognition complex subunit 2 OS=Drosophila melanogaster
GN=Orc2 PE=1 SV=2
Length = 618
Score = 32.7 bits (73), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 3/66 (4%)
Query: 32 SGDKIIMPPSALDRLASLHIDYPMLFELRNNAAERVSHCGVLEFIAEEGMIYMPYWMMEN 91
+ KI+ LDRL + + +F L + H G + I EE Y P WM
Sbjct: 288 ASSKILTSDHTLDRLKNPRLAADRVFSLLSEIKTSAEHEGSINAIMEEYRSYFPKWM--- 344
Query: 92 LLLQEG 97
+L EG
Sbjct: 345 CILNEG 350
>sp|A6URC0|DHYS_METVS Probable deoxyhypusine synthase OS=Methanococcus vannielii (strain
SB / ATCC 35089 / DSM 1224) GN=dys PE=3 SV=1
Length = 335
Score = 32.3 bits (72), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 23/43 (53%)
Query: 87 WMMENLLLQEGDIVRVKNVTLPKGTYVKLQPHTKDFLDISNPK 129
W + +L+E I R+ NV +P Y++ + + F DI + K
Sbjct: 122 WNLNGAILREKGINRIGNVFVPNDRYIEFETYMTRFFDILSKK 164
>sp|Q9Y2I9|TBC30_HUMAN TBC1 domain family member 30 OS=Homo sapiens GN=TBC1D30 PE=1 SV=2
Length = 924
Score = 32.0 bits (71), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 176 DCEVDFAPPLDYKEPEKPIASASSRATAKAEEASVETEPKFSPFTGV 222
+ E+ PP PE P A ++AT+KA + S P FSPF V
Sbjct: 832 ETELRVHPPCQRHCPEPPSAPEENKATSKAPQGSNSKTPIFSPFPSV 878
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.132 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 127,776,084
Number of Sequences: 539616
Number of extensions: 5537127
Number of successful extensions: 15865
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 162
Number of HSP's that attempted gapping in prelim test: 15734
Number of HSP's gapped (non-prelim): 286
length of query: 321
length of database: 191,569,459
effective HSP length: 117
effective length of query: 204
effective length of database: 128,434,387
effective search space: 26200614948
effective search space used: 26200614948
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (28.1 bits)