Query 020791
Match_columns 321
No_of_seqs 214 out of 347
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 08:14:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020791.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020791hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zc1_A Ubiquitin fusion degrad 100.0 2.3E-80 7.7E-85 563.2 17.6 184 10-193 18-208 (208)
2 2yuj_A Ubiquitin fusion degrad 100.0 9.9E-76 3.4E-80 526.7 19.4 173 11-183 14-190 (190)
3 3qwz_A Transitional endoplasmi 99.5 7.6E-13 2.6E-17 120.3 14.5 145 33-182 39-188 (211)
4 1cz4_A VCP-like ATPase; double 99.5 5.5E-13 1.9E-17 118.5 12.8 143 33-182 21-173 (185)
5 3tiw_A Transitional endoplasmi 99.5 1.8E-12 6.1E-17 115.8 15.8 144 33-181 36-184 (187)
6 1wlf_A PEX1, peroxisome biogen 99.1 2.5E-10 8.7E-15 100.9 10.0 147 32-183 23-177 (179)
7 3cf2_A TER ATPase, transitiona 97.7 0.00038 1.3E-08 73.9 13.5 142 34-179 37-184 (806)
8 2jv2_A Putative uncharacterize 97.3 0.00078 2.7E-08 53.0 8.3 68 109-181 11-79 (83)
9 1ypw_A Transitional endoplasmi 97.1 0.0047 1.6E-07 64.9 13.9 137 34-174 37-178 (806)
10 3hu3_A Transitional endoplasmi 96.6 0.079 2.7E-06 52.7 17.5 143 33-180 36-183 (489)
11 1yfb_A Transition state regula 90.5 0.67 2.3E-05 34.0 6.1 39 77-119 19-57 (59)
12 2glw_A PHS018, 92AA long hypot 90.2 1 3.4E-05 35.7 7.4 68 78-152 13-84 (92)
13 1cz4_A VCP-like ATPase; double 89.0 0.31 1.1E-05 42.8 4.0 83 79-175 21-103 (185)
14 3tiw_A Transitional endoplasmi 88.0 0.35 1.2E-05 42.9 3.6 71 78-153 35-105 (187)
15 1qcs_A N-ethylmaleimide sensit 87.5 2.1 7.2E-05 38.1 8.5 88 78-165 60-157 (211)
16 1cr5_A SEC18P (residues 22 - 2 86.1 3 0.0001 36.6 8.5 88 78-165 54-154 (189)
17 2l66_A SSO7C4, transcriptional 85.5 0.66 2.2E-05 32.7 3.3 38 77-118 9-46 (53)
18 3qwz_A Transitional endoplasmi 85.0 0.57 1.9E-05 42.2 3.4 85 78-175 38-122 (211)
19 2glw_A PHS018, 92AA long hypot 78.3 6.5 0.00022 30.9 6.9 72 30-104 11-84 (92)
20 3cf2_A TER ATPase, transitiona 76.9 2.3 7.8E-05 45.2 5.0 86 78-176 35-120 (806)
21 3hu3_A Transitional endoplasmi 73.6 3.3 0.00011 41.1 4.9 104 51-179 20-123 (489)
22 3cgm_A SLYD, peptidyl-prolyl C 64.7 53 0.0018 27.7 10.0 94 73-188 27-124 (158)
23 1wlf_A PEX1, peroxisome biogen 64.4 3.4 0.00012 36.0 2.5 74 75-151 19-93 (179)
24 1mvf_D MAZE protein, PEMI-like 61.0 13 0.00045 27.8 5.0 37 79-119 12-48 (82)
25 2kfw_A FKBP-type peptidyl-prol 58.1 18 0.00061 31.9 6.0 94 73-188 32-128 (196)
26 1s3s_G P47 protein; AAA ATPase 55.1 2.8 9.7E-05 34.5 0.3 16 213-228 4-19 (127)
27 2w1t_A Spovt, stage V sporulat 53.1 11 0.00039 33.2 3.9 41 76-119 10-50 (178)
28 2k8i_A SLYD, peptidyl-prolyl C 53.0 54 0.0019 28.0 8.2 92 73-186 32-126 (171)
29 1eik_A RNA polymerase subunit 49.3 21 0.00071 27.6 4.4 31 86-116 43-73 (77)
30 1ypw_A Transitional endoplasmi 47.9 12 0.00042 39.1 3.8 87 50-153 19-105 (806)
31 1hmj_A RPB5, protein (subunit 45.0 20 0.00068 27.8 3.7 30 87-116 42-71 (78)
32 2oyn_A Hypothetical protein MJ 43.9 20 0.00067 30.8 3.8 29 70-105 105-133 (146)
33 1a62_A RHO; transcription term 41.3 19 0.00066 29.8 3.3 30 79-109 76-105 (130)
34 2ki8_A Tungsten formylmethanof 40.4 21 0.00072 29.6 3.4 29 78-106 51-79 (146)
35 3o27_A Putative uncharacterize 35.6 33 0.0011 26.0 3.4 26 79-104 24-49 (68)
36 2fhd_A RAD9 homolog, DNA repai 35.5 11 0.00037 32.7 0.9 31 84-116 54-84 (153)
37 3fdr_A Tudor and KH domain-con 34.9 57 0.0019 24.7 4.9 34 140-173 26-61 (94)
38 2k52_A Uncharacterized protein 34.1 60 0.002 23.8 4.8 54 92-151 1-55 (80)
39 1ss6_A P47, NSFL1 cofactor P47 33.8 9.2 0.00031 30.8 0.1 14 215-228 81-94 (102)
40 3db3_A E3 ubiquitin-protein li 33.3 48 0.0016 29.0 4.6 32 134-165 85-123 (161)
41 1yle_A Arginine N-succinyltran 32.9 40 0.0014 32.5 4.4 44 57-103 292-338 (342)
42 4duh_A DNA gyrase subunit B; s 32.5 41 0.0014 30.0 4.2 48 106-153 160-208 (220)
43 2z0t_A Putative uncharacterize 32.4 20 0.00067 29.2 1.9 39 125-165 15-55 (109)
44 3ttz_A DNA gyrase subunit B; p 32.4 43 0.0015 29.3 4.3 47 107-153 134-181 (198)
45 4ayb_H DNA-directed RNA polyme 31.8 56 0.0019 25.4 4.4 31 86-116 49-79 (84)
46 3idw_A Actin cytoskeleton-regu 31.7 2.7 9.2E-05 32.3 -3.1 16 87-102 42-57 (72)
47 2ln7_A LPXTG-SITE transpeptida 30.9 54 0.0019 27.1 4.5 26 140-165 74-99 (147)
48 2ylm_A Ubiquitin carboxyl-term 28.6 1E+02 0.0034 30.9 6.7 84 57-154 135-218 (530)
49 4emv_A DNA topoisomerase IV, B 28.1 48 0.0016 29.8 3.9 47 107-153 168-214 (226)
50 2kr7_A FKBP-type peptidyl-prol 27.9 2E+02 0.0069 23.7 7.5 92 73-186 37-131 (151)
51 3k3s_A Altronate hydrolase; st 27.7 18 0.00061 29.5 0.9 32 84-115 17-48 (105)
52 4dt4_A FKBP-type 16 kDa peptid 26.6 1.9E+02 0.0066 24.6 7.3 92 72-185 54-149 (169)
53 1b12_A Signal peptidase I; ser 26.2 82 0.0028 27.9 5.1 46 136-181 44-93 (248)
54 1t2w_A Sortase; transpeptidase 24.3 91 0.0031 25.4 4.7 24 141-164 74-97 (145)
55 2ozi_A Hypothetical protein RP 24.3 25 0.00087 27.0 1.2 53 95-151 12-72 (98)
56 3ntk_A Maternal protein tudor; 24.3 2E+02 0.0067 24.0 6.9 37 140-176 46-84 (169)
57 2loj_A Putative cytoplasmic pr 24.0 92 0.0031 23.2 4.1 22 142-163 34-55 (63)
58 3dlm_A Histone-lysine N-methyl 22.3 1.7E+02 0.006 26.4 6.4 63 114-176 124-193 (213)
59 3m7n_A Putative uncharacterize 21.8 38 0.0013 29.0 1.9 92 53-152 19-122 (179)
60 2jra_A Protein RPA2121; domain 20.9 1E+02 0.0035 23.3 3.8 22 142-163 38-59 (67)
61 4dni_A Fusion protein of RNA-e 20.8 65 0.0022 29.7 3.3 56 119-176 190-257 (257)
62 1fr3_A MOP, molybdate/tungstat 20.4 81 0.0028 21.5 3.1 22 83-104 37-58 (67)
No 1
>1zc1_A Ubiquitin fusion degradation protein 1; UFD1, double-PSI-beta-barrel, protein turnover; NMR {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.3e-80 Score=563.17 Aligned_cols=184 Identities=51% Similarity=0.933 Sum_probs=180.1
Q ss_pred CCccceeeEEeecccc----cCCCCCCCCeEecCHHHHHHHHhCCCCCCeeEEEEeCCCCCEEEEEEeeeEeCCCeEecc
Q 020791 10 GTSFEQSYRCYPASFI----EKPQIESGDKIIMPPSALDRLASLHIDYPMLFELRNNAAERVSHCGVLEFIAEEGMIYMP 85 (321)
Q Consensus 10 ~~~F~~~yrcyp~s~~----~k~~~~~GdKIiLPpSaL~~L~~l~i~~PmlFel~n~~~~r~thcGVLEF~A~EG~i~LP 85 (321)
.++|+++|||||++|+ +|+++++||||+||||||++|+++|++|||+|+|+|..++++||||||||+|+||+||||
T Consensus 18 ~~~f~~~~rc~~~~~~p~~~~r~~~~~GdKIiLP~SaL~~L~~~~i~~Pm~F~l~n~~~~~~th~GVlEF~A~EG~v~lP 97 (208)
T 1zc1_A 18 PQTFEEFFRCYPIAMMNDRIRKDDANFGGKIFLPPSALSKLSMLNIRYPMLFKLTANETGRVTHGGVLEFIAEEGRVYLP 97 (208)
T ss_dssp CEEEEEEEEEEEGGGSCTTTSCHHHHHSSEEEECHHHHHHHHHTTCCSSCCEEEECTTTCCEEEEEEEEECCSSCEEEEC
T ss_pred cccccceEEEEEEEeccCcccccccCCCCeEECCHHHHHHHHHCCCCcCEEEEEEeCCCCCEEEEEEEEEEcCCCeEEcC
Confidence 3789999999999996 888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCCeEEEEEeecCCcceEEEeeCCcCcCCccccHHHHHhhcccceecccCCEEEEEECCEEEEEEEEEec
Q 020791 86 YWMMENLLLQEGDIVRVKNVTLPKGTYVKLQPHTKDFLDISNPKAILETTLRNYSCLTTGDSIMVAYNNKKYYIDIIETK 165 (321)
Q Consensus 86 ~WMm~~L~l~egd~V~v~~~~LPkGt~vkLqP~s~~FldIsnpKavLE~~LRnys~LT~GD~I~I~yn~k~Y~l~V~e~k 165 (321)
+|||++|+|++||+|+|++++||||||||||||+.+|++|+|||||||++||||+|||+||+|.|+||++.|+|+|+|+|
T Consensus 98 ~wmm~~L~l~~gd~V~i~~~~LPkgt~vklqP~~~~Fldi~npKavLE~~LRnfstLT~Gd~I~i~~~~~~y~l~V~e~k 177 (208)
T 1zc1_A 98 QWMMETLGIQPGSLLQISSTDVPLGQFVKLEPQSVDFLDISDPKAVLENVLRNFSTLTVDDVIEISYNGKTFKIKILEVK 177 (208)
T ss_dssp HHHHHHHTCCTTCEEEEEEEECCCCSEEEEECCHHHHHTSSCHHHHHHHHHHHCSCEESSSEEEEEETTEEEEEEEEEEE
T ss_pred HHHHHhcCCCCCCEEEEEEeEcCCCCEEEEeECccccccccCHHHHHHHHhhcCccccCCCEEEEEeCCEEEEEEEEEEc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC---eeEEEeCceeeeecCCCCCCCCCCc
Q 020791 166 PSN---AISIIETDCEVDFAPPLDYKEPEKP 193 (321)
Q Consensus 166 P~~---aVsIIeTDleVDF~pPldy~ep~~~ 193 (321)
|++ |||||||||+|||+||+||+||+++
T Consensus 178 P~~~~~aV~IidTDleVDf~~p~~y~ep~~~ 208 (208)
T 1zc1_A 178 PESSSKSICVIETDLVTDFAPPVGYVEPDYK 208 (208)
T ss_dssp CSSTTCEECCSSSCSEEEECCCCCCCCCCCC
T ss_pred CCCCCceEEEEeCceEEEecCCCCCcCCCCC
Confidence 998 9999999999999999999999864
No 2
>2yuj_A Ubiquitin fusion degradation 1-like; ubiquitin-dependent proteolytic, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=100.00 E-value=9.9e-76 Score=526.65 Aligned_cols=173 Identities=55% Similarity=1.051 Sum_probs=169.4
Q ss_pred CccceeeEEeecccc----cCCCCCCCCeEecCHHHHHHHHhCCCCCCeeEEEEeCCCCCEEEEEEeeeEeCCCeEeccH
Q 020791 11 TSFEQSYRCYPASFI----EKPQIESGDKIIMPPSALDRLASLHIDYPMLFELRNNAAERVSHCGVLEFIAEEGMIYMPY 86 (321)
Q Consensus 11 ~~F~~~yrcyp~s~~----~k~~~~~GdKIiLPpSaL~~L~~l~i~~PmlFel~n~~~~r~thcGVLEF~A~EG~i~LP~ 86 (321)
.+|+++|||||+||+ +|+++++||||+||||||++|+++|++|||+|+|+|..++|+||||||||+|+||+||||+
T Consensus 14 ~~f~~~~~cy~~s~~~~~~~r~~~~~GdKI~LP~SaL~~L~~~~i~~Pm~F~l~n~~~~r~th~GVlEFsA~EG~i~lP~ 93 (190)
T 2yuj_A 14 NRFSTQYRCFSVSMLAGPNDRSDVEKGGKIIMPPSALDQLSRLNITYPMLFKLTNKNSDRMTHCGVLEFVADEGICYLPH 93 (190)
T ss_dssp SSCEEEEEEECSTTSSSSSCCSTTTTTTEEECCHHHHHHHHHTTCCSSCEEEEEETTTTEEEEEEEEECCCBTTBEECCS
T ss_pred ccccceEEEEehhHcCCcccccccCCCCeEECcHHHHHHHHHCCCCcCeEEEEecCCCCceEEEEEEEEecCCCeEEeCH
Confidence 349999999999997 4799999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCCeEEEEEeecCCcceEEEeeCCcCcCCccccHHHHHhhcccceecccCCEEEEEECCEEEEEEEEEecC
Q 020791 87 WMMENLLLQEGDIVRVKNVTLPKGTYVKLQPHTKDFLDISNPKAILETTLRNYSCLTTGDSIMVAYNNKKYYIDIIETKP 166 (321)
Q Consensus 87 WMm~~L~l~egd~V~v~~~~LPkGt~vkLqP~s~~FldIsnpKavLE~~LRnys~LT~GD~I~I~yn~k~Y~l~V~e~kP 166 (321)
|||++|+|++||.|+|++++||||||||||||+++|++|+|||||||++||||+|||+||+|.|+||++.|+|+|+|+||
T Consensus 94 wmm~~L~l~~gd~V~v~~~~LPkgt~vklqP~~~~Fl~i~npKavLE~~LrnfstLT~Gd~I~I~~~~~~y~l~V~e~kP 173 (190)
T 2yuj_A 94 WMMQNLLLEEGGLVQVESVNLQVATYSKFQPQSPDFLDITNPKAVLENALRNFACLTTGDVIAINYNEKIYELRVMETKP 173 (190)
T ss_dssp HHHHHHTCCTTEEEEEEEECCCCCSEEEEEESSHHHHHSSCHHHHHHHHHTTCCEECTTCEEEEESSSCEEEEEEEEESS
T ss_pred HHHHhcCCCCCCEEEEEEeecCCCcEEEEEECCccccccccHHHHHHHHHhcCcccccCCEEEEEeCCEEEEEEEEEEcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeEEEeCceeeeecC
Q 020791 167 SNAISIIETDCEVDFAP 183 (321)
Q Consensus 167 ~~aVsIIeTDleVDF~p 183 (321)
++|||||||||+|||+|
T Consensus 174 ~~aV~IidTDl~vDf~p 190 (190)
T 2yuj_A 174 DKAVSIIECDMNVDFDA 190 (190)
T ss_dssp SSSEECSSCCCEEEECC
T ss_pred CCeEEEEeCCEEEEecC
Confidence 99999999999999986
No 3
>3qwz_A Transitional endoplasmic reticulum ATPase; UBX, P97 binding, transport protein; HET: MLY; 2.00A {Homo sapiens} PDB: 2pjh_B
Probab=99.46 E-value=7.6e-13 Score=120.28 Aligned_cols=145 Identities=19% Similarity=0.281 Sum_probs=121.1
Q ss_pred CCeEecCHHHHHHHHhCCCCCCeeEEEEeCCCCCEEEEEEeee-EeCCCeEeccHHHHHHcCCCCCCeEEEEEe-ecCCc
Q 020791 33 GDKIIMPPSALDRLASLHIDYPMLFELRNNAAERVSHCGVLEF-IAEEGMIYMPYWMMENLLLQEGDIVRVKNV-TLPKG 110 (321)
Q Consensus 33 GdKIiLPpSaL~~L~~l~i~~PmlFel~n~~~~r~thcGVLEF-~A~EG~i~LP~WMm~~L~l~egd~V~v~~~-~LPkG 110 (321)
.+.+.|+|+++++|.-. .==+.+|+. ...+.|+|-|+.. ..++|.|.|..|+++||++..||.|.|+-+ .++.|
T Consensus 39 rgivrl~p~~m~~Lgl~---~GD~V~I~G-kr~k~Tva~v~~~~~~~~g~Irid~~~R~N~gV~iGD~V~V~~~~~v~~A 114 (211)
T 3qwz_A 39 NSVVSLSQPKMDELQLF---RGDTVLLKG-XKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYG 114 (211)
T ss_dssp TTEEEECHHHHHHHTCC---BTCEEEEEC-STTCEEEEEEEECTTSCTTEEEECHHHHHHTTCCTTCEEEEEECTTCCBC
T ss_pred CcEEEECHHHHHHcCCC---CCCEEEEeC-CCCCcEEEEEEeCCCCCCCEEEeCHHHHhhcCCCCCCEEEEEECCCCCCc
Confidence 77899999999877533 222678884 3344899999864 456899999999999999999999999999 89999
Q ss_pred ceEEEeeCCcCcCCccc--cHHHHHhhcc-cceecccCCEEEEEECCEEEEEEEEEecCCCeeEEEeCceeeeec
Q 020791 111 TYVKLQPHTKDFLDISN--PKAILETTLR-NYSCLTTGDSIMVAYNNKKYYIDIIETKPSNAISIIETDCEVDFA 182 (321)
Q Consensus 111 t~vkLqP~s~~FldIsn--pKavLE~~LR-nys~LT~GD~I~I~yn~k~Y~l~V~e~kP~~aVsIIeTDleVDF~ 182 (321)
+.|.|.|.+..+-.|+. ....|...|. +|-.|++||+|.|.+.++.++|.|++++|. .+|+|..|-+|++.
T Consensus 115 ~~V~LaP~~~~i~~i~~~~~~~~lk~~l~~~~rPV~~GD~i~v~~~~~~v~f~Vv~t~P~-g~viV~~~T~I~~~ 188 (211)
T 3qwz_A 115 KRIHVLPIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFXVVETDPS-PYCIVAPDTVIHCE 188 (211)
T ss_dssp SEEEEEEBGGGCTTCCSCHHHHTTHHHHTTCCEEEETTCEEECCCTTSCCEEEEEEEESS-SEEEECTTCEEECC
T ss_pred eEEEEeccCcchhccCchhHHHHHHHHHhhCCceeecCCEEEEccCCcEEEEEEEeecCC-CCEEECCCcEEEEc
Confidence 99999998655544543 3677888887 489999999999999999999999999997 58899888888884
No 4
>1cz4_A VCP-like ATPase; double-PSI beta-barrel, beta-CLAM, substrate recognition DOM hydrolase; NMR {Thermoplasma acidophilum} SCOP: b.52.2.3 d.31.1.1 PDB: 1cz5_A
Probab=99.45 E-value=5.5e-13 Score=118.50 Aligned_cols=143 Identities=17% Similarity=0.180 Sum_probs=119.1
Q ss_pred CCeEecCHHHHHHHHhCCCCCCeeEEEEeCCCCCEEEEEEee-eEeC--CCeEeccHHHHHHcCCCCCCeEEEEEeecCC
Q 020791 33 GDKIIMPPSALDRLASLHIDYPMLFELRNNAAERVSHCGVLE-FIAE--EGMIYMPYWMMENLLLQEGDIVRVKNVTLPK 109 (321)
Q Consensus 33 GdKIiLPpSaL~~L~~l~i~~PmlFel~n~~~~r~thcGVLE-F~A~--EG~i~LP~WMm~~L~l~egd~V~v~~~~LPk 109 (321)
-+.+.|+|++|++|. +..==+.+|+ ..|.|+|-|+. +..+ .|.|.|..|+++|+++..||.|.|+-+.++.
T Consensus 21 r~ivrl~p~~m~~Lg---l~~GD~V~I~---G~r~t~a~v~~~~~ed~~~g~Irid~~~R~N~gv~iGD~V~V~~~~~~~ 94 (185)
T 1cz4_A 21 MSRVRLDESSRRLLD---AEIGDVVEIE---KVRKTVGRVYRARPEDENKGIVRIDSVMRNNCGASIGDKVKVRKVRTEI 94 (185)
T ss_dssp SSEEEECHHHHHTTC---CCTTCEEEEE---SSSEEEEEEEECSSTTTTTSEEECCHHHHHHHTCCTTCEEEEEEECCCB
T ss_pred CCEEEECHHHHHHcC---CCCCCEEEEE---cCCeEEEEEEEcCcCcCCCCEEEeCHHHHhccCCCCCCEEEEEECCCCC
Confidence 356999999998665 3332347776 35789999986 3334 6899999999999999999999999999999
Q ss_pred cceEEEeeCC---cCcCCccccHHHHHhhcccceecccCCEEEEEE---CCE-EEEEEEEEecCCCeeEEEeCceeeeec
Q 020791 110 GTYVKLQPHT---KDFLDISNPKAILETTLRNYSCLTTGDSIMVAY---NNK-KYYIDIIETKPSNAISIIETDCEVDFA 182 (321)
Q Consensus 110 Gt~vkLqP~s---~~FldIsnpKavLE~~LRnys~LT~GD~I~I~y---n~k-~Y~l~V~e~kP~~aVsIIeTDleVDF~ 182 (321)
|+.|.|.|.+ ..+.-..|....|...|+++. |++||+|.+.+ .++ ...|.|++++|+.++|+|..|-+|++.
T Consensus 95 A~~V~l~P~~~~~~~~~~~~~~~~~l~~~l~~rp-v~~Gd~v~v~~~~~~g~~~~~f~Vv~t~P~~~~v~Vt~~T~I~i~ 173 (185)
T 1cz4_A 95 AKKVTLAPIIRKDQRLKFGEGIEEYVQRALIRRP-MLEQDNISVPGLTLAGQTGLLFKVVKTLPSKVPVEIGEETKIEIR 173 (185)
T ss_dssp CSEEEEEEECSTTCCSCCCSSHHHHHHHHHTTCE-ECTTCEECCSSCCCSSCCCCEEEEEEESSSSSCEECCTTCEEEEC
T ss_pred ccEEEEecccccccccccccchHHHHHHHHCCCc-ccCCCEEEEeeeccCCCeEEEEEEEEEcCCCceEEEcCCeEEEEC
Confidence 9999999985 444323577888999999985 99999999986 667 899999999998878899999999985
No 5
>3tiw_A Transitional endoplasmic reticulum ATPase; beta-barrel alpha-helix, transport protein ATPase ubiquitin ubiquitin, phosphorylation; 1.80A {Homo sapiens} PDB: 3qq8_A 3qq7_A 3qc8_A
Probab=99.45 E-value=1.8e-12 Score=115.82 Aligned_cols=144 Identities=19% Similarity=0.284 Sum_probs=115.5
Q ss_pred CCeEecCHHHHHHHHhCCCCCCeeEEEEeCCCCCEEEEEEeee-EeCCCeEeccHHHHHHcCCCCCCeEEEEEe-ecCCc
Q 020791 33 GDKIIMPPSALDRLASLHIDYPMLFELRNNAAERVSHCGVLEF-IAEEGMIYMPYWMMENLLLQEGDIVRVKNV-TLPKG 110 (321)
Q Consensus 33 GdKIiLPpSaL~~L~~l~i~~PmlFel~n~~~~r~thcGVLEF-~A~EG~i~LP~WMm~~L~l~egd~V~v~~~-~LPkG 110 (321)
.+.+.|+|+++++|.-. .==+.+|+. ...+.|+|-|+.- ..++|.|.|..|+.+||++..||.|.|+-+ .++.|
T Consensus 36 ~givrl~p~~m~~Lgl~---~GD~V~I~G-kr~k~Tva~v~~~~~~~~g~Irid~~~R~N~gV~iGD~V~V~~~~~v~~A 111 (187)
T 3tiw_A 36 NSVVSLSQPKMDELQLF---RGDTVLLKG-KKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYG 111 (187)
T ss_dssp TTEEEECHHHHHHHTCC---TTCEEEEEC-STTCEEEEEEEECTTSCTTEEEECHHHHHHTTCCTTCEEEEEECTTCEEC
T ss_pred CcEEEECHHHHHHcCCC---CCCEEEEEC-CCCCeEEEEEEECCCCCCCEEEeCHHHHhhcCCCCCCEEEEEECCCCCCc
Confidence 67899999999987633 222578874 2345899999875 456899999999999999999999999999 89999
Q ss_pred ceEEEeeCCcCcCCccc--cHHHHHhhcc-cceecccCCEEEEEECCEEEEEEEEEecCCCeeEEEeCceeeee
Q 020791 111 TYVKLQPHTKDFLDISN--PKAILETTLR-NYSCLTTGDSIMVAYNNKKYYIDIIETKPSNAISIIETDCEVDF 181 (321)
Q Consensus 111 t~vkLqP~s~~FldIsn--pKavLE~~LR-nys~LT~GD~I~I~yn~k~Y~l~V~e~kP~~aVsIIeTDleVDF 181 (321)
+.|.|.|.+...-.|+. ....|...|. +|-.+++||+|.|.+.++.++|.|++++|+ .+|+|..|-+|..
T Consensus 112 ~~V~LaP~~~~i~~i~~~~~~~~lk~~l~~~~rpV~~GD~i~v~~~~~~v~f~Vv~t~P~-~~v~V~~~T~I~~ 184 (187)
T 3tiw_A 112 KRIHVLPIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPS-PYCIVAPDTVIHC 184 (187)
T ss_dssp SEEEEEECCCC-----CCHHHHTHHHHHTTTCCEEETTCEEEEECSSSEEEEEEEEEESS-SEEECCTTCEEEC
T ss_pred eEEEEeccccchhhccchhHHHHHHHHhccCCceeeCCCEEEEccCCCEEEEEEEEecCC-CCEEECCCcEEEe
Confidence 99999998644323442 3677888888 499999999999999999999999999997 6677766666654
No 6
>1wlf_A PEX1, peroxisome biogenesis factor 1; N-terminal domain, protein transport; 2.05A {Mus musculus} SCOP: b.52.2.3 d.31.1.1
Probab=99.11 E-value=2.5e-10 Score=100.88 Aligned_cols=147 Identities=16% Similarity=0.165 Sum_probs=121.5
Q ss_pred CCCeEecCHHHHHHHHhCCCCCCeeEEEEeCCCCCEEEEEEeeeEe----CCCeEeccHHHHHHcCCCCCCeEEEEE-ee
Q 020791 32 SGDKIIMPPSALDRLASLHIDYPMLFELRNNAAERVSHCGVLEFIA----EEGMIYMPYWMMENLLLQEGDIVRVKN-VT 106 (321)
Q Consensus 32 ~GdKIiLPpSaL~~L~~l~i~~PmlFel~n~~~~r~thcGVLEF~A----~EG~i~LP~WMm~~L~l~egd~V~v~~-~~ 106 (321)
..+-+-||++++++|. +..=-.-+|+- ..++.++|...+.. ..+.|-|..-+.+||++..||.|.|+- ..
T Consensus 23 ~~~~vrL~~~~~~~L~---~~~gd~VeI~g--~~~t~~~~w~~~~~~~d~~~~~I~Id~~~r~n~gv~~Gd~V~V~~~~~ 97 (179)
T 1wlf_A 23 RDCFLHLPRRLVAQLH---LLQNQAIEVAS--DHQPTYLSWVEGRHFNDQSENVAEINRQVGQKLGLSSGDQVFLRPCSH 97 (179)
T ss_dssp SSSCEEECHHHHHHTT---CCTTCCEEEES--SSCCEEECEEECSSCC---CCEEEEEHHHHHHTTCCTTCEEEEEECSC
T ss_pred CCcEEECCHHHHHHcC---CCCCcEEEEEe--CCeeEEEEEECCCCcccCCCCEEEECHHHHhHCCCCCCCEEEEEECCC
Confidence 5567899999998875 33334678873 34577888888765 478999999999999999999999998 79
Q ss_pred cCCcceEEEeeCCcCcCCc-cccHHHHHhhccc-ceecccCCEEEEEECC-EEEEEEEEEecCCCeeEEEeCceeeeecC
Q 020791 107 LPKGTYVKLQPHTKDFLDI-SNPKAILETTLRN-YSCLTTGDSIMVAYNN-KKYYIDIIETKPSNAISIIETDCEVDFAP 183 (321)
Q Consensus 107 LPkGt~vkLqP~s~~FldI-snpKavLE~~LRn-ys~LT~GD~I~I~yn~-k~Y~l~V~e~kP~~aVsIIeTDleVDF~p 183 (321)
.+.|+-|.|.|.+.|-++| .+.-..||..|.+ +-++++||+|.|+..+ ....|.|+.+.|...+++|..|-+|.++|
T Consensus 98 ~~~A~~V~laP~~~dD~ei~e~~a~~le~~Ll~QiR~v~~G~~i~v~~~g~~~i~f~V~~~~P~~~~v~It~~TeI~v~p 177 (179)
T 1wlf_A 98 VVSCQQVEVEPLSADDWEILELHAISLEQHLLDQIRIVFPKAVVPIWVDQQTYIFIQIVTLMPAAPYGRLETNTKLLIQP 177 (179)
T ss_dssp CEECSEEEEEESSHHHHHHHHHSCSSHHHHHHHHCCEECTTCEEEEESSSSCEEEEEEEEEESCCSSEECCTTCEEEECC
T ss_pred CccceEEEEEcCCcCCeEEehhHHHHHHHHHhcCceeccCCCEEEEEecCCeEEEEEEEEeeCCCCeEEECCCcEEEEec
Confidence 9999999999998764554 5556678888885 8899999999999766 88999999999977789999999998865
No 7
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.66 E-value=0.00038 Score=73.85 Aligned_cols=142 Identities=18% Similarity=0.244 Sum_probs=100.3
Q ss_pred CeEecCHHHHHHHHhCCCCCCeeEEEEeCCCCCEEEEEEee-eEeCCCeEeccHHHHHHcCCCCCCeEEEEEe-ecCCcc
Q 020791 34 DKIIMPPSALDRLASLHIDYPMLFELRNNAAERVSHCGVLE-FIAEEGMIYMPYWMMENLLLQEGDIVRVKNV-TLPKGT 111 (321)
Q Consensus 34 dKIiLPpSaL~~L~~l~i~~PmlFel~n~~~~r~thcGVLE-F~A~EG~i~LP~WMm~~L~l~egd~V~v~~~-~LPkGt 111 (321)
.-|.|.|..+++|. +..==+-+|+... .+.+.|-++. =..+.|.|.|..-+.+||++..||.|.|+-+ .++.++
T Consensus 37 ~~~~~~~~~~~~l~---~~~gd~v~i~g~~-~~~~~~~~~~~~~~~~~~i~~~~~~r~n~~v~~gd~V~v~~~~~~~~a~ 112 (806)
T 3cf2_A 37 SVVSLSQPKMDELQ---LFRGDTVLLKGKK-RREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGK 112 (806)
T ss_dssp TEEEECHHHHHHTT---CCSSCEEEEECGG-GCBCCEEEEECTTSBTTBCEECHHHHHTTTCCTTCEEEEEECCCCCBCS
T ss_pred CEEEECHHHHHHcC---CCCCCEEEEEcCC-CceEEEEEcCCCCCCCCEEEeCHHHHHhcCCCCCCEEEEEECCCCCcCC
Confidence 45889999998765 3322245665322 2233343331 1345799999999999999999999999988 799999
Q ss_pred eEEEeeCCcCcCCc--cccHHHHHhhcc-cceecccCCEEEEEECCEEEEEEEEEecCCCeeEEE-eCceee
Q 020791 112 YVKLQPHTKDFLDI--SNPKAILETTLR-NYSCLTTGDSIMVAYNNKKYYIDIIETKPSNAISII-ETDCEV 179 (321)
Q Consensus 112 ~vkLqP~s~~FldI--snpKavLE~~LR-nys~LT~GD~I~I~yn~k~Y~l~V~e~kP~~aVsII-eTDleV 179 (321)
.|.|.|.+...-.+ ......|...|. .+-.+++||+|.|.+.+....|.|++++|...+.|- +|.+.+
T Consensus 113 ~v~l~p~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~gd~~~v~~~~~~~~f~V~~~~P~~~~~v~~~T~i~~ 184 (806)
T 3cf2_A 113 RIHVLPIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHC 184 (806)
T ss_dssp BEEEEEBTTTSTTCCSCHHHHTHHHHHTTTCCEEETTCEEEECCTTSCEEEEEEEESSSSEEECCTTSBCCB
T ss_pred EEEEeccccchhccchhHHHHHHHHHHHhcCCcccCCCEEEEecCCcEEEEEEEEEeCCCCeEECCCcEEEE
Confidence 99999975332222 223444555554 467899999999999999999999999998754433 344443
No 8
>2jv2_A Putative uncharacterized protein PH1500; AAA ATPase NC-domain-like, unknown function; NMR {Pyrococcus horikoshii}
Probab=97.35 E-value=0.00078 Score=53.01 Aligned_cols=68 Identities=18% Similarity=0.301 Sum_probs=55.0
Q ss_pred CcceEEEeeCCcCcCCc-cccHHHHHhhcccceecccCCEEEEEECCEEEEEEEEEecCCCeeEEEeCceeeee
Q 020791 109 KGTYVKLQPHTKDFLDI-SNPKAILETTLRNYSCLTTGDSIMVAYNNKKYYIDIIETKPSNAISIIETDCEVDF 181 (321)
Q Consensus 109 kGt~vkLqP~s~~FldI-snpKavLE~~LRnys~LT~GD~I~I~yn~k~Y~l~V~e~kP~~aVsIIeTDleVDF 181 (321)
-|+-|.|.|.+ -+.+ .|.-..|-+.|+++. +++||+|.|..-++...|.|++++|. +++|.-|-++++
T Consensus 11 ~A~kVvLAP~~--~i~~~~~~~~~lk~~L~grP-V~~GD~I~i~~~G~~i~F~Vv~t~P~--~V~Vt~~T~I~i 79 (83)
T 2jv2_A 11 IMSELKLKPLP--KVELPPDFVDVIRIKLQGKT-VRTGDVIGISILGKEVKFKVVQAYPS--PLRVEDRTKITL 79 (83)
T ss_dssp CCCEEEEEESS--SCCCCHHHHHHHHHHHTTSE-ECTTCEEEEEETTEEEEEEEEEEESS--SEECCTTSEEEE
T ss_pred EEEEEEEcCCC--ceecCccHHHHHHHHHCCCC-ccCCCEEEEeeCCCEEEEEEEEecCc--cEEECCCcEEEE
Confidence 47889999984 2334 455667778888855 99999999998889999999999998 778877777776
No 9
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.13 E-value=0.0047 Score=64.88 Aligned_cols=137 Identities=18% Similarity=0.257 Sum_probs=99.2
Q ss_pred CeEecCHHHHHHHHhCCCCCCeeEEEEeCCCCCEEEEEEee-eEeCCCeEeccHHHHHHcCCCCCCeEEEEEe-ecCCcc
Q 020791 34 DKIIMPPSALDRLASLHIDYPMLFELRNNAAERVSHCGVLE-FIAEEGMIYMPYWMMENLLLQEGDIVRVKNV-TLPKGT 111 (321)
Q Consensus 34 dKIiLPpSaL~~L~~l~i~~PmlFel~n~~~~r~thcGVLE-F~A~EG~i~LP~WMm~~L~l~egd~V~v~~~-~LPkGt 111 (321)
+.+.|.|.++++|. +..==+-+|+... .+.|.|-|+- -..+.|.|.|...+.+|+++..||.|.|+-+ .++.|+
T Consensus 37 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 112 (806)
T 1ypw_A 37 SVVSLSQPKMDELQ---LFRGDTVLLKGKK-RREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGK 112 (806)
T ss_dssp SCEEECHHHHHHHT---CCTTCEEEEEETT-TEECCEEEEECSSSCTTEEECCHHHHTTTTCCTTCEEEEEECTTCCBCS
T ss_pred CEEEECHHHHHHcC---CCCCCEEEEecCc-cCcEEEEEecCCCCCCCeEEecHHHHhhcCCCCCCEEEEEECCCCCcCc
Confidence 89999999998775 3332345676432 2346676653 2345789999999999999999999999999 799999
Q ss_pred eEEEeeCCcCcCCccc--cHHHHHhhcc-cceecccCCEEEEEECCEEEEEEEEEecCCCeeEEEe
Q 020791 112 YVKLQPHTKDFLDISN--PKAILETTLR-NYSCLTTGDSIMVAYNNKKYYIDIIETKPSNAISIIE 174 (321)
Q Consensus 112 ~vkLqP~s~~FldIsn--pKavLE~~LR-nys~LT~GD~I~I~yn~k~Y~l~V~e~kP~~aVsIIe 174 (321)
.|.|.|-+...-.+.. ....|...|. .+-.|++||++.+......+.|.|+++.|...+.|..
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~~~p~~~~~v~~ 178 (806)
T 1ypw_A 113 RIHVLPIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAP 178 (806)
T ss_dssp EEEEEECTTTSSSCCSCCTTTTTGGGTTTTCCBCCTTCEEEECCSSSCEEEEEEEETTTTCCBCCS
T ss_pred EEEEeCCccchhhcccchHHHHHHHHhccCCccccCCCEEEecCCCcceEEEEEeccCCCCceecC
Confidence 9999997533221221 1122333333 2456999999999888889999999999987665553
No 10
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=96.65 E-value=0.079 Score=52.66 Aligned_cols=143 Identities=18% Similarity=0.267 Sum_probs=102.8
Q ss_pred CCeEecCHHHHHHHHhCCCCCCeeEEEEeCCCCCEEEEEEee-eEeCCCeEeccHHHHHHcCCCCCCeEEEEEe-ecCCc
Q 020791 33 GDKIIMPPSALDRLASLHIDYPMLFELRNNAAERVSHCGVLE-FIAEEGMIYMPYWMMENLLLQEGDIVRVKNV-TLPKG 110 (321)
Q Consensus 33 GdKIiLPpSaL~~L~~l~i~~PmlFel~n~~~~r~thcGVLE-F~A~EG~i~LP~WMm~~L~l~egd~V~v~~~-~LPkG 110 (321)
.+.|.|.|+++++|. +..==+-+|.. ...+.|.|.|+- -.-+.|.|-|..-+.+|+++.-||.|.|+-+ .+|.|
T Consensus 36 ~~~~~~~~~~~~~l~---~~~gd~v~~~g-~~~~~~~~~~~~~~~~~~~~i~~~~~~r~n~~~~~gd~v~v~~~~~~~~a 111 (489)
T 3hu3_A 36 NSVVSLSQPKMDELQ---LFRGDTVLLKG-KKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYG 111 (489)
T ss_dssp TTEEEECHHHHHHHT---CCTTCEEEEEC-STTCEEEEEEEECTTSCTTEEECCHHHHHHTTCCTTCEEEEEECTTCCBC
T ss_pred CCEEEECHHHHHHcC---CCCCCEEEEec-CccCcEEEEEeeCCCCCCCEEEecHHHHhhcCCCCCCEEEEEECCCCCcc
Confidence 489999999998775 33333456663 334578999862 2234789999999999999999999999999 99999
Q ss_pred ceEEEeeCCcCcCCcccc-HHHHHhhc--ccceecccCCEEEEEECCEEEEEEEEEecCCCeeEEEeCceeee
Q 020791 111 TYVKLQPHTKDFLDISNP-KAILETTL--RNYSCLTTGDSIMVAYNNKKYYIDIIETKPSNAISIIETDCEVD 180 (321)
Q Consensus 111 t~vkLqP~s~~FldIsnp-KavLE~~L--Rnys~LT~GD~I~I~yn~k~Y~l~V~e~kP~~aVsIIeTDleVD 180 (321)
+-|.|.|-+..--.+..- -..|+.-+ ..+-.+..||.+.+.-..+.+++.+++++|...+ ++..+-.+.
T Consensus 112 ~~v~~~~~~~av~a~~~ga~d~~~Kp~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~t~~~ 183 (489)
T 3hu3_A 112 KRIHVLPIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVHGGMRAVEFKVVETDPSPYC-IVAPDTVIH 183 (489)
T ss_dssp SEEEEEEBGGGSSSCCSCHHHHTHHHHHTTTCEEEETTCEEEEEETTEEEEEEEEEEESSSEE-EECTTCEEE
T ss_pred CEEEEcCCCcccccccchhHHHHhHHHHhhcCcccccCCEEEecCCCceEEEEEEeecCCCce-EEcCCeEEE
Confidence 999999976543223221 11222222 1366778899999999999999999999986543 333343333
No 11
>1yfb_A Transition state regulatory protein ABRB; , homodimer, bioinformatics, swapped-hairpin barrel, transcription; NMR {Bacillus subtilis} SCOP: b.129.1.3 PDB: 1ysf_A 2k1n_A* 1z0r_A 2ro4_A 2fy9_A 2ro3_A
Probab=90.47 E-value=0.67 Score=33.95 Aligned_cols=39 Identities=18% Similarity=0.198 Sum_probs=32.5
Q ss_pred eCCCeEeccHHHHHHcCCCCCCeEEEEEeecCCcceEEEeeCC
Q 020791 77 AEEGMIYMPYWMMENLLLQEGDIVRVKNVTLPKGTYVKLQPHT 119 (321)
Q Consensus 77 A~EG~i~LP~WMm~~L~l~egd~V~v~~~~LPkGt~vkLqP~s 119 (321)
...|.|.||.=+.+.|+|++||.|.|... +.-+.|+|..
T Consensus 19 ~~kGqItIPkeiR~~Lgi~~Gd~l~i~~~----~~~IiL~p~~ 57 (59)
T 1yfb_A 19 DELGRVVIPIELRRTLGIAEKDALEIYVD----DEKIILKKYK 57 (59)
T ss_dssp CTTCEEECCHHHHHHTTCCTTCEEEEEEE----TTEEEEEECC
T ss_pred CCCCEEEeCHHHHHHcCCCCCCEEEEEEE----CCEEEEEECC
Confidence 46799999999999999999999988764 2358888864
No 12
>2glw_A PHS018, 92AA long hypothetical protein; RIFT barrel, bioinformatics, transcription; NMR {Pyrococcus horikoshii}
Probab=90.19 E-value=1 Score=35.67 Aligned_cols=68 Identities=21% Similarity=0.230 Sum_probs=47.8
Q ss_pred CCCeEeccHHHHHHcCCCCCCeEEEEEeecCCcc----eEEEeeCCcCcCCccccHHHHHhhcccceecccCCEEEEEE
Q 020791 78 EEGMIYMPYWMMENLLLQEGDIVRVKNVTLPKGT----YVKLQPHTKDFLDISNPKAILETTLRNYSCLTTGDSIMVAY 152 (321)
Q Consensus 78 ~EG~i~LP~WMm~~L~l~egd~V~v~~~~LPkGt----~vkLqP~s~~FldIsnpKavLE~~LRnys~LT~GD~I~I~y 152 (321)
..|.|-+|..+-+.|+|.+||.|.++.+.+..|. +....= +.--+|.=||.+-|. --|..||.+.+.-
T Consensus 13 ~~gqvtiP~~iR~~LgI~~GD~V~v~~i~~~~g~~~~~~~~~~v--~~kGqitIPkeiR~~-----lgi~~Gd~l~~~~ 84 (92)
T 2glw_A 13 RIGRIIIPAGTRKFYGIEQGDFVEIKIVKYEGEEPKEGTFTARV--GEQGSVIIPKALRDV-----IGIKPGEVIEVLL 84 (92)
T ss_dssp GGGEEECCHHHHHHHTCCTTCEEEEEEEEEETTEEEEEEEEEEC--CGGGEEECCHHHHHH-----HTCCTTCEEEEEE
T ss_pred CCCEEEecHHHHHHcCCCCCCEEEEEEEEecCCccceeEEEEEE--CcCceEECcHHHHHH-----cCCCCCCEEEEEE
Confidence 4799999999999999999999999876666555 111110 122345667765443 4788999998864
No 13
>1cz4_A VCP-like ATPase; double-PSI beta-barrel, beta-CLAM, substrate recognition DOM hydrolase; NMR {Thermoplasma acidophilum} SCOP: b.52.2.3 d.31.1.1 PDB: 1cz5_A
Probab=89.03 E-value=0.31 Score=42.83 Aligned_cols=83 Identities=14% Similarity=0.195 Sum_probs=59.4
Q ss_pred CCeEeccHHHHHHcCCCCCCeEEEEEeecCCcceEEEeeCCcCcCCccccHHHHHhhcccceecccCCEEEEEECCEEEE
Q 020791 79 EGMIYMPYWMMENLLLQEGDIVRVKNVTLPKGTYVKLQPHTKDFLDISNPKAILETTLRNYSCLTTGDSIMVAYNNKKYY 158 (321)
Q Consensus 79 EG~i~LP~WMm~~L~l~egd~V~v~~~~LPkGt~vkLqP~s~~FldIsnpKavLE~~LRnys~LT~GD~I~I~yn~k~Y~ 158 (321)
-|.|+|+.=.|+.|+|.+||.|.|+. .+.+.++.-|...+ ++.+-.--|-..+|+-.-+..||.+.|.-
T Consensus 21 r~ivrl~p~~m~~Lgl~~GD~V~I~G---~r~t~a~v~~~~~e--d~~~g~Irid~~~R~N~gv~iGD~V~V~~------ 89 (185)
T 1cz4_A 21 MSRVRLDESSRRLLDAEIGDVVEIEK---VRKTVGRVYRARPE--DENKGIVRIDSVMRNNCGASIGDKVKVRK------ 89 (185)
T ss_dssp SSEEEECHHHHHTTCCCTTCEEEEES---SSEEEEEEEECSST--TTTTSEEECCHHHHHHHTCCTTCEEEEEE------
T ss_pred CCEEEECHHHHHHcCCCCCCEEEEEc---CCeEEEEEEEcCcC--cCCCCEEEeCHHHHhccCCCCCCEEEEEE------
Confidence 37799999999999999999999975 56788888886322 11111222345566667789999999863
Q ss_pred EEEEEecCCCeeEEEeC
Q 020791 159 IDIIETKPSNAISIIET 175 (321)
Q Consensus 159 l~V~e~kP~~aVsIIeT 175 (321)
.+++++.-|.+--+
T Consensus 90 ---~~~~~A~~V~l~P~ 103 (185)
T 1cz4_A 90 ---VRTEIAKKVTLAPI 103 (185)
T ss_dssp ---ECCCBCSEEEEEEE
T ss_pred ---CCCCCccEEEEecc
Confidence 35777777766533
No 14
>3tiw_A Transitional endoplasmic reticulum ATPase; beta-barrel alpha-helix, transport protein ATPase ubiquitin ubiquitin, phosphorylation; 1.80A {Homo sapiens} PDB: 3qq8_A 3qq7_A 3qc8_A
Probab=88.03 E-value=0.35 Score=42.85 Aligned_cols=71 Identities=20% Similarity=0.242 Sum_probs=53.0
Q ss_pred CCCeEeccHHHHHHcCCCCCCeEEEEEeecCCcceEEEeeCCcCcCCccccHHHHHhhcccceecccCCEEEEEEC
Q 020791 78 EEGMIYMPYWMMENLLLQEGDIVRVKNVTLPKGTYVKLQPHTKDFLDISNPKAILETTLRNYSCLTTGDSIMVAYN 153 (321)
Q Consensus 78 ~EG~i~LP~WMm~~L~l~egd~V~v~~~~LPkGt~vkLqP~s~~FldIsnpKavLE~~LRnys~LT~GD~I~I~yn 153 (321)
+.|.+.|+.-.|+.|+|.+||.|.|+..+ -+-|.++..|.. + ...-+--|-..+|+-..+..||.+.|.--
T Consensus 35 D~givrl~p~~m~~Lgl~~GD~V~I~Gkr-~k~Tva~v~~~~-~---~~~g~Irid~~~R~N~gV~iGD~V~V~~~ 105 (187)
T 3tiw_A 35 DNSVVSLSQPKMDELQLFRGDTVLLKGKK-RREAVCIVLSDD-T---CSDEKIRMNRVVRNNLRVRLGDVISIQPC 105 (187)
T ss_dssp CTTEEEECHHHHHHHTCCTTCEEEEECST-TCEEEEEEEECT-T---SCTTEEEECHHHHHHTTCCTTCEEEEEEC
T ss_pred CCcEEEECHHHHHHcCCCCCCEEEEECCC-CCeEEEEEEECC-C---CCCCEEEeCHHHHhhcCCCCCCEEEEEEC
Confidence 47899999999999999999999999742 124777888763 2 22222334566777788999999998643
No 15
>1qcs_A N-ethylmaleimide sensitive factor (NSF-N); double-PSI beta barrel alpha beta roll, fusion protein; 1.90A {Cricetulus griseus} SCOP: b.52.2.3 d.31.1.1 PDB: 1qdn_A
Probab=87.50 E-value=2.1 Score=38.11 Aligned_cols=88 Identities=13% Similarity=0.222 Sum_probs=62.1
Q ss_pred CCCeEeccHHHHHHcCCCCCCeEEEEEeecCCc-ceEEEeeCCcCcCC--c-----cccHHHHHhhcccce--ecccCCE
Q 020791 78 EEGMIYMPYWMMENLLLQEGDIVRVKNVTLPKG-TYVKLQPHTKDFLD--I-----SNPKAILETTLRNYS--CLTTGDS 147 (321)
Q Consensus 78 ~EG~i~LP~WMm~~L~l~egd~V~v~~~~LPkG-t~vkLqP~s~~Fld--I-----snpKavLE~~LRnys--~LT~GD~ 147 (321)
+.|+|.|-.-.-+.+++.-||.|.|+.-..+.. .|+-.-=.+.||+. - -|-..+-..-+++|. .||.|..
T Consensus 60 ~~G~Igls~~QR~wa~lsl~~~v~V~~y~~~~~~~~l~si~lEidf~~k~~~~~~~~D~dela~~f~~~F~~Qift~gQ~ 139 (211)
T 1qcs_A 60 VPGSVAFSLPQRKWAGLSIGQEIEVALYSFDKAKQCIGTMTIEIDFLQKKNIDSNPYDTDKMAAEFIQQFNNQAFSVGQQ 139 (211)
T ss_dssp CTTEEEECHHHHHHHTCCTTCEEEEEEECCCHHHHBEEEEEEEEEESCGGGCCCCEEEHHHHHHHHHHHHTTCEEETTCE
T ss_pred CCCEeecCHHHHhhhcccCCCcEEEEEecCCCCCceEEEEEEEEEehhcCCCCCcccCHHHHHHHHHHHHcCCCCCCCCE
Confidence 689999998888888999999999987654421 23322223345542 1 233444444555666 5999999
Q ss_pred EEEEECCEEEEEEEEEec
Q 020791 148 IMVAYNNKKYYIDIIETK 165 (321)
Q Consensus 148 I~I~yn~k~Y~l~V~e~k 165 (321)
|.+.|++..|.|.|.+++
T Consensus 140 l~f~~~g~~l~l~V~~v~ 157 (211)
T 1qcs_A 140 LVFSFNDKLFGLLVKDIE 157 (211)
T ss_dssp EEEEETTEEEEEEEEEEE
T ss_pred EEEEECCcEEEEEEeEEE
Confidence 999999999999888754
No 16
>1cr5_A SEC18P (residues 22 - 210); double-PSI beta barrel, vesicle fusion, endocytosis/exocytosis complex; 2.30A {Saccharomyces cerevisiae} SCOP: b.52.2.3 d.31.1.1
Probab=86.05 E-value=3 Score=36.56 Aligned_cols=88 Identities=13% Similarity=0.102 Sum_probs=61.5
Q ss_pred CCCeEeccHHHHHHcCCCCCCeEEEEEeecC----CcceEEEeeCCcCcCC------c-cccHHHHHhhcccce--eccc
Q 020791 78 EEGMIYMPYWMMENLLLQEGDIVRVKNVTLP----KGTYVKLQPHTKDFLD------I-SNPKAILETTLRNYS--CLTT 144 (321)
Q Consensus 78 ~EG~i~LP~WMm~~L~l~egd~V~v~~~~LP----kGt~vkLqP~s~~Fld------I-snpKavLE~~LRnys--~LT~ 144 (321)
+.|+|.|-.-.-+.+++.-||.|.|+.-..| ...++-.-=.+.+|+. . -|-..+-..-+++|. .||.
T Consensus 54 ~~G~I~ls~~QR~wa~lsl~~~v~V~~y~p~~~~~~~~~l~si~lEidf~~k~~~~~~~~D~dela~~f~~~F~~Qift~ 133 (189)
T 1cr5_A 54 PPGTIGFNGNQRTWGGWSLNQDVQAKAFDLFKYSGKQSYLGSIDIDISFRARGKAVSTVFDQDELAKQFVRCYESQIFSP 133 (189)
T ss_dssp CTTEEEECHHHHHHHTCCTTCEEEEEECCHHHHHTTCCEEEEEEEEEEECC-------CCCHHHHHHHHHHHHTTCEECT
T ss_pred CCCEEecCHHHHHhhcccCCCeEEEEEeCCccCCCCcceEEEEEEEEEehhcCCCCCCccCHHHHHHHHHHHHcCCCCCC
Confidence 6899999988888889999999999977542 1133322223334441 1 234444445555666 6999
Q ss_pred CCEEEEEECCEEEEEEEEEec
Q 020791 145 GDSIMVAYNNKKYYIDIIETK 165 (321)
Q Consensus 145 GD~I~I~yn~k~Y~l~V~e~k 165 (321)
|..|.+.|++..|.|.|.++.
T Consensus 134 gQ~l~f~~~g~~l~l~V~~i~ 154 (189)
T 1cr5_A 134 TQYLIMEFQGHFFDLKIRNVQ 154 (189)
T ss_dssp TCEEEEEETTEEEEEEEEEEE
T ss_pred CCEEEEEECCcEEEEEEEEEE
Confidence 999999999999999987764
No 17
>2l66_A SSO7C4, transcriptional regulator, ABRB family; DNA binding protein, transcription regulator; NMR {Sulfolobus solfataricus}
Probab=85.54 E-value=0.66 Score=32.73 Aligned_cols=38 Identities=16% Similarity=0.263 Sum_probs=30.4
Q ss_pred eCCCeEeccHHHHHHcCCCCCCeEEEEEeecCCcceEEEeeC
Q 020791 77 AEEGMIYMPYWMMENLLLQEGDIVRVKNVTLPKGTYVKLQPH 118 (321)
Q Consensus 77 A~EG~i~LP~WMm~~L~l~egd~V~v~~~~LPkGt~vkLqP~ 118 (321)
...|.|.+|.=+.+.|+|++||.|.+... .+. +.|+|.
T Consensus 9 ~~kgqi~IPk~ir~~lgi~~Gd~v~i~~~---~~~-ivl~p~ 46 (53)
T 2l66_A 9 SRNYQVTIPAKVRQKFQIKEGDLVKVTFD---ESE-GVVKIQ 46 (53)
T ss_dssp CSSSCBCCCHHHHHHSCCCTTCEEEEEEC---SSS-CCEEEE
T ss_pred CCCCEEEeCHHHHHHcCcCCCCEEEEEEE---CCE-EEEEEC
Confidence 46799999999999999999999988753 232 666664
No 18
>3qwz_A Transitional endoplasmic reticulum ATPase; UBX, P97 binding, transport protein; HET: MLY; 2.00A {Homo sapiens} PDB: 2pjh_B
Probab=84.96 E-value=0.57 Score=42.25 Aligned_cols=85 Identities=19% Similarity=0.254 Sum_probs=60.0
Q ss_pred CCCeEeccHHHHHHcCCCCCCeEEEEEeecCCcceEEEeeCCcCcCCccccHHHHHhhcccceecccCCEEEEEECCEEE
Q 020791 78 EEGMIYMPYWMMENLLLQEGDIVRVKNVTLPKGTYVKLQPHTKDFLDISNPKAILETTLRNYSCLTTGDSIMVAYNNKKY 157 (321)
Q Consensus 78 ~EG~i~LP~WMm~~L~l~egd~V~v~~~~LPkGt~vkLqP~s~~FldIsnpKavLE~~LRnys~LT~GD~I~I~yn~k~Y 157 (321)
+.|.|.|+.-.|+.|+|.+||.|.|+..+ -+-|.+...|.. + ...-+--|-..+|+-..+..||.+.|.--.
T Consensus 38 Drgivrl~p~~m~~Lgl~~GD~V~I~Gkr-~k~Tva~v~~~~-~---~~~g~Irid~~~R~N~gV~iGD~V~V~~~~--- 109 (211)
T 3qwz_A 38 DNSVVSLSQPKMDELQLFRGDTVLLKGXK-RREAVCIVLSDD-T---CSDEKIRMNRVVRNNLRVRLGDVISIQPCP--- 109 (211)
T ss_dssp CTTEEEECHHHHHHHTCCBTCEEEEECST-TCEEEEEEEECT-T---SCTTEEEECHHHHHHTTCCTTCEEEEEECT---
T ss_pred CCcEEEECHHHHHHcCCCCCCEEEEeCCC-CCcEEEEEEeCC-C---CCCCEEEeCHHHHhhcCCCCCCEEEEEECC---
Confidence 47899999999999999999999999742 224777777753 2 222223345667777889999999986321
Q ss_pred EEEEEEecCCCeeEEEeC
Q 020791 158 YIDIIETKPSNAISIIET 175 (321)
Q Consensus 158 ~l~V~e~kP~~aVsIIeT 175 (321)
+++++.-|.+.=+
T Consensus 110 -----~v~~A~~V~LaP~ 122 (211)
T 3qwz_A 110 -----DVKYGKRIHVLPI 122 (211)
T ss_dssp -----TCCBCSEEEEEEB
T ss_pred -----CCCCceEEEEecc
Confidence 4566666666544
No 19
>2glw_A PHS018, 92AA long hypothetical protein; RIFT barrel, bioinformatics, transcription; NMR {Pyrococcus horikoshii}
Probab=78.29 E-value=6.5 Score=30.91 Aligned_cols=72 Identities=15% Similarity=0.323 Sum_probs=46.0
Q ss_pred CCCCCeEecCHHHHHHHHhCCCCCCeeEE-EEeCCCCCEEEEEEeee-EeCCCeEeccHHHHHHcCCCCCCeEEEEE
Q 020791 30 IESGDKIIMPPSALDRLASLHIDYPMLFE-LRNNAAERVSHCGVLEF-IAEEGMIYMPYWMMENLLLQEGDIVRVKN 104 (321)
Q Consensus 30 ~~~GdKIiLPpSaL~~L~~l~i~~PmlFe-l~n~~~~r~thcGVLEF-~A~EG~i~LP~WMm~~L~l~egd~V~v~~ 104 (321)
+...++|.+|.++-+.|.-..-++ +.++ +.-....+ ....... +...|.|.+|.-+.+.|+|++||.|.+..
T Consensus 11 v~~~gqvtiP~~iR~~LgI~~GD~-V~v~~i~~~~g~~--~~~~~~~~v~~kGqitIPkeiR~~lgi~~Gd~l~~~~ 84 (92)
T 2glw_A 11 VHRIGRIIIPAGTRKFYGIEQGDF-VEIKIVKYEGEEP--KEGTFTARVGEQGSVIIPKALRDVIGIKPGEVIEVLL 84 (92)
T ss_dssp CBGGGEEECCHHHHHHHTCCTTCE-EEEEEEEEETTEE--EEEEEEEECCGGGEEECCHHHHHHHTCCTTCEEEEEE
T ss_pred EeCCCEEEecHHHHHHcCCCCCCE-EEEEEEEecCCcc--ceeEEEEEECcCceEECcHHHHHHcCCCCCCEEEEEE
Confidence 556789999999988775221122 2232 11011111 2222223 26689999999999999999999988764
No 20
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=76.92 E-value=2.3 Score=45.24 Aligned_cols=86 Identities=22% Similarity=0.283 Sum_probs=56.6
Q ss_pred CCCeEeccHHHHHHcCCCCCCeEEEEEeecCCcceEEEeeCCcCcCCccccHHHHHhhcccceecccCCEEEEEECCEEE
Q 020791 78 EEGMIYMPYWMMENLLLQEGDIVRVKNVTLPKGTYVKLQPHTKDFLDISNPKAILETTLRNYSCLTTGDSIMVAYNNKKY 157 (321)
Q Consensus 78 ~EG~i~LP~WMm~~L~l~egd~V~v~~~~LPkGt~vkLqP~s~~FldIsnpKavLE~~LRnys~LT~GD~I~I~yn~k~Y 157 (321)
+.+.|+|..-.|+.|+|.+||+|.|+..+--.+.-+.+.+.+ +.+-..-|-..+|.-..+..||.|.|.-
T Consensus 35 d~~~~~~~~~~~~~l~~~~gd~v~i~g~~~~~~~~~~~~~~~-----~~~~~i~~~~~~r~n~~v~~gd~V~v~~----- 104 (806)
T 3cf2_A 35 DNSVVSLSQPKMDELQLFRGDTVLLKGKKRREAVCIVLSDDT-----CSDEKIRMNRVVRNNLRVRLGDVISIQP----- 104 (806)
T ss_dssp CTTEEEECHHHHHHTTCCSSCEEEEECGGGCBCCEEEEECTT-----SBTTBCEECHHHHHTTTCCTTCEEEEEE-----
T ss_pred CCCEEEECHHHHHHcCCCCCCEEEEEcCCCceEEEEEcCCCC-----CCCCEEEeCHHHHHhcCCCCCCEEEEEE-----
Confidence 467899999999999999999999987653222222233321 2222222445667777889999999963
Q ss_pred EEEEEEecCCCeeEEEeCc
Q 020791 158 YIDIIETKPSNAISIIETD 176 (321)
Q Consensus 158 ~l~V~e~kP~~aVsIIeTD 176 (321)
+.+++++..|.|..++
T Consensus 105 ---~~~~~~a~~v~l~p~~ 120 (806)
T 3cf2_A 105 ---CPDVKYGKRIHVLPID 120 (806)
T ss_dssp ---CCCCCBCSBEEEEEBT
T ss_pred ---CCCCCcCCEEEEeccc
Confidence 2245666777665544
No 21
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=73.63 E-value=3.3 Score=41.05 Aligned_cols=104 Identities=19% Similarity=0.234 Sum_probs=68.0
Q ss_pred CCCCeeEEEEeCCCCCEEEEEEeeeEeCCCeEeccHHHHHHcCCCCCCeEEEEEeecCCcceEEEeeCCcCcCCccccHH
Q 020791 51 IDYPMLFELRNNAAERVSHCGVLEFIAEEGMIYMPYWMMENLLLQEGDIVRVKNVTLPKGTYVKLQPHTKDFLDISNPKA 130 (321)
Q Consensus 51 i~~PmlFel~n~~~~r~thcGVLEF~A~EG~i~LP~WMm~~L~l~egd~V~v~~~~LPkGt~vkLqP~s~~FldIsnpKa 130 (321)
...|.-|.+...... +.|.|+|..-.|+.|+|.+||+|.|+..+ .+.+.+...|... +..-..
T Consensus 20 ~~~~~~~~v~~~~~~------------d~~~~~~~~~~~~~l~~~~gd~v~~~g~~-~~~~~~~~~~~~~----~~~~~i 82 (489)
T 3hu3_A 20 KNRPNRLIVDEAINE------------DNSVVSLSQPKMDELQLFRGDTVLLKGKK-RREAVCIVLSDDT----CSDEKI 82 (489)
T ss_dssp CCCTTEEEEECCTTC------------CTTEEEECHHHHHHHTCCTTCEEEEECST-TCEEEEEEEECTT----SCTTEE
T ss_pred ccCCCeeEEccCCCC------------cCCEEEECHHHHHHcCCCCCCEEEEecCc-cCcEEEEEeeCCC----CCCCEE
Confidence 456666666643221 34999999999999999999999999642 1346677766521 222223
Q ss_pred HHHhhcccceecccCCEEEEEECCEEEEEEEEEecCCCeeEEEeCceee
Q 020791 131 ILETTLRNYSCLTTGDSIMVAYNNKKYYIDIIETKPSNAISIIETDCEV 179 (321)
Q Consensus 131 vLE~~LRnys~LT~GD~I~I~yn~k~Y~l~V~e~kP~~aVsIIeTDleV 179 (321)
.+-..+|+-..+..||.|.|.--. +++++..|.|...|..|
T Consensus 83 ~~~~~~r~n~~~~~gd~v~v~~~~--------~~~~a~~v~~~~~~~av 123 (489)
T 3hu3_A 83 RMNRVVRNNLRVRLGDVISIQPCP--------DVKYGKRIHVLPIDDTV 123 (489)
T ss_dssp ECCHHHHHHTTCCTTCEEEEEECT--------TCCBCSEEEEEEBGGGS
T ss_pred EecHHHHhhcCCCCCCEEEEEECC--------CCCccCEEEEcCCCccc
Confidence 356677888889999999986331 44455555555444333
No 22
>3cgm_A SLYD, peptidyl-prolyl CIS-trans isomerase; chaperone function, two domain P rotamase; 2.41A {Thermus thermophilus} PDB: 3cgn_A 3luo_A*
Probab=64.67 E-value=53 Score=27.68 Aligned_cols=94 Identities=15% Similarity=0.230 Sum_probs=62.8
Q ss_pred eeeEeCCCeEeccHHHHHHcCCCCCCeEEEEEeecCCcceEEEeeCCcCcCCccccHHHHHhhcccce---ecccCCEEE
Q 020791 73 LEFIAEEGMIYMPYWMMENLLLQEGDIVRVKNVTLPKGTYVKLQPHTKDFLDISNPKAILETTLRNYS---CLTTGDSIM 149 (321)
Q Consensus 73 LEF~A~EG~i~LP~WMm~~L~l~egd~V~v~~~~LPkGt~vkLqP~s~~FldIsnpKavLE~~LRnys---~LT~GD~I~ 149 (321)
++|.-..|.+ +|.|--.=++++.|+...|... |. .+|- -.|+..|.+-.+..|. .+..|+.+.
T Consensus 27 ~~f~~G~g~v-ipG~e~aL~Gm~~Ge~~~v~ip-----------p~-~aYG-~~~~~lv~~v~~~~f~~~~~~~~G~~~~ 92 (158)
T 3cgm_A 27 LSYLHGHRNL-IPGLEEALEGREEGEAFQAHVP-----------AE-KAYG-PHDPEGVQVVPLSAFPEDAEVVPGAQFY 92 (158)
T ss_dssp EEEETTSSSS-CHHHHHHHTTCBTTCEEEEEEC-----------GG-GTTC-CCCGGGEEEEEGGGSCTTSCCCTTCEEE
T ss_pred EEEEECCCCc-ChHHHHHHcCCCCCCEEEEEEC-----------cH-HHcC-CCCcceEEEEEHHHCCCCCCCccCCEEE
Confidence 8888777765 8999999999999998876532 11 1222 2345555444455554 588899998
Q ss_pred EEECC-EEEEEEEEEecCCCeeEEEeCceeeeecCCCCCC
Q 020791 150 VAYNN-KKYYIDIIETKPSNAISIIETDCEVDFAPPLDYK 188 (321)
Q Consensus 150 I~yn~-k~Y~l~V~e~kP~~aVsIIeTDleVDF~pPldy~ 188 (321)
+.-.+ +.+...|+++ -++.+.|||.-||-=+
T Consensus 93 ~~~~~G~~~~~~V~~v--------~~~~v~vD~NHPLAGk 124 (158)
T 3cgm_A 93 AQDMEGNPMPLTVVAV--------EGEEVTVDFNHPLAGK 124 (158)
T ss_dssp EEETTTEEEEEEEEEE--------ETTEEEEECSCTTTTC
T ss_pred EECCCCCEEEEEEEEE--------CCCEEEEeCCccccCC
Confidence 87653 5555556554 4667778888876533
No 23
>1wlf_A PEX1, peroxisome biogenesis factor 1; N-terminal domain, protein transport; 2.05A {Mus musculus} SCOP: b.52.2.3 d.31.1.1
Probab=64.44 E-value=3.4 Score=35.97 Aligned_cols=74 Identities=20% Similarity=0.333 Sum_probs=45.4
Q ss_pred eE-eCCCeEeccHHHHHHcCCCCCCeEEEEEeecCCcceEEEeeCCcCcCCccccHHHHHhhcccceecccCCEEEEE
Q 020791 75 FI-AEEGMIYMPYWMMENLLLQEGDIVRVKNVTLPKGTYVKLQPHTKDFLDISNPKAILETTLRNYSCLTTGDSIMVA 151 (321)
Q Consensus 75 F~-A~EG~i~LP~WMm~~L~l~egd~V~v~~~~LPkGt~vkLqP~s~~FldIsnpKavLE~~LRnys~LT~GD~I~I~ 151 (321)
|+ ...|.+-||.-.|+.|++.+||.|.|+..+ +..|+-..... ++-+...-.--+-..+|+-.-|..||.+.|.
T Consensus 19 ~~~~~~~~vrL~~~~~~~L~~~~gd~VeI~g~~--~t~~~~w~~~~-~~~d~~~~~I~Id~~~r~n~gv~~Gd~V~V~ 93 (179)
T 1wlf_A 19 FTNARDCFLHLPRRLVAQLHLLQNQAIEVASDH--QPTYLSWVEGR-HFNDQSENVAEINRQVGQKLGLSSGDQVFLR 93 (179)
T ss_dssp EECCSSSCEEECHHHHHHTTCCTTCCEEEESSS--CCEEECEEECS-SCC---CCEEEEEHHHHHHTTCCTTCEEEEE
T ss_pred EECCCCcEEECCHHHHHHcCCCCCcEEEEEeCC--eeEEEEEECCC-CcccCCCCEEEECHHHHhHCCCCCCCEEEEE
Confidence 44 346899999999999999999999999753 22233222222 1111111111122456665669999999886
No 24
>1mvf_D MAZE protein, PEMI-like protein 1; plasmid addiction, camel antibody, addiction antidote, immun; 1.65A {Escherichia coli} SCOP: b.129.1.1 PDB: 1ub4_C
Probab=61.03 E-value=13 Score=27.77 Aligned_cols=37 Identities=22% Similarity=0.306 Sum_probs=29.9
Q ss_pred CCeEeccHHHHHHcCCCCCCeEEEEEeecCCcceEEEeeCC
Q 020791 79 EGMIYMPYWMMENLLLQEGDIVRVKNVTLPKGTYVKLQPHT 119 (321)
Q Consensus 79 EG~i~LP~WMm~~L~l~egd~V~v~~~~LPkGt~vkLqP~s 119 (321)
.+.|.||.=+.+.|+|.+||.|.|... +.-+.|.|..
T Consensus 12 s~~v~iPk~~~~~lgl~~gd~v~i~~~----~~~iii~p~~ 48 (82)
T 1mvf_D 12 SPAVRIPATLMQALNLNIDDEVKIDLV----DGKLIIEPVR 48 (82)
T ss_dssp EEEEECCHHHHHHTTCCTTCBEEEEEE----TTEEEEEEC-
T ss_pred ccEEEECHHHHHHcCCCCCCEEEEEEE----CCEEEEEECC
Confidence 357899999999999999999998653 3458888874
No 25
>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein, cobalt, copper, cytoplasm, metal- binding, nickel, rotamase, zinc; NMR {Escherichia coli}
Probab=58.06 E-value=18 Score=31.93 Aligned_cols=94 Identities=12% Similarity=0.101 Sum_probs=58.9
Q ss_pred eeeEeCCCeEeccHHHHHHcCCCCCCeEEEEEeecCCcceEEEeeCCcCcCCccccHHHHHhhcccce---ecccCCEEE
Q 020791 73 LEFIAEEGMIYMPYWMMENLLLQEGDIVRVKNVTLPKGTYVKLQPHTKDFLDISNPKAILETTLRNYS---CLTTGDSIM 149 (321)
Q Consensus 73 LEF~A~EG~i~LP~WMm~~L~l~egd~V~v~~~~LPkGt~vkLqP~s~~FldIsnpKavLE~~LRnys---~LT~GD~I~ 149 (321)
++|..-.|. ++|-|--.=++++.|+.+.|.. |. ..+|-+ .|+..|.+-.+..|. .|..|++|.
T Consensus 32 ~~f~lG~g~-vipG~eeaL~Gm~vGe~~~v~I---pp---------e~aYGe-~~~~lV~~vp~~~f~~~~~~~~G~~~~ 97 (196)
T 2kfw_A 32 LDYLHGHGS-LISGLETALEGHEVGDKFDVAV---GA---------NDAYGQ-YDENLVQRVPKDVFMGVDELQVGMRFL 97 (196)
T ss_dssp CEEESSSSS-SCHHHHHHHSSSCTTCEEEEEC---ST---------TTTSSC-CCTTTCEEECGGGCCCSSCCCTTCEEE
T ss_pred EEEEECCCC-cchHHHHHHcCCCCCCEEEEEe---Cc---------HHhcCC-CChhhEEEEEHHHCCCccCcccCCEEE
Confidence 345444444 5899999999999999887653 21 112221 344444444444454 488999999
Q ss_pred EEECCEEEEEEEEEecCCCeeEEEeCceeeeecCCCCCC
Q 020791 150 VAYNNKKYYIDIIETKPSNAISIIETDCEVDFAPPLDYK 188 (321)
Q Consensus 150 I~yn~k~Y~l~V~e~kP~~aVsIIeTDleVDF~pPldy~ 188 (321)
+.-.+..+...|+++. +..+.|||.-||-=+
T Consensus 98 ~~~~~G~~~~~V~~v~--------~~~V~vD~NHPLAGk 128 (196)
T 2kfw_A 98 AETDQGPVPVEITAVE--------DDHVVVDGNHMLAGQ 128 (196)
T ss_dssp EEETTEEEEEEBCCCC--------SSSEEECCCCTTSCC
T ss_pred EECCCCcEEEEEEEEc--------CCEEEEeCCCCCCCC
Confidence 8876655555555554 556778888887533
No 26
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=55.08 E-value=2.8 Score=34.52 Aligned_cols=16 Identities=31% Similarity=0.625 Sum_probs=9.7
Q ss_pred CCcccceeeeccccCC
Q 020791 213 EPKFSPFTGVARRLDG 228 (321)
Q Consensus 213 ~~~~~~F~G~G~rLdG 228 (321)
.+++.+|+|.|+||.+
T Consensus 4 ~~~~~~F~G~G~~Lgs 19 (127)
T 1s3s_G 4 KGAFKAFTGEGQKLGS 19 (127)
T ss_dssp ------CCSCCCCCCS
T ss_pred CCCCCCceecCeECCC
Confidence 3468899999999988
No 27
>2w1t_A Spovt, stage V sporulation protein T; transcription, transcription regulation, repressor, activator, DNA-binding; 2.60A {Bacillus subtilis} PDB: 2w1t_B 2ro5_A
Probab=53.14 E-value=11 Score=33.16 Aligned_cols=41 Identities=24% Similarity=0.341 Sum_probs=33.0
Q ss_pred EeCCCeEeccHHHHHHcCCCCCCeEEEEEeecCCcceEEEeeCC
Q 020791 76 IAEEGMIYMPYWMMENLLLQEGDIVRVKNVTLPKGTYVKLQPHT 119 (321)
Q Consensus 76 ~A~EG~i~LP~WMm~~L~l~egd~V~v~~~~LPkGt~vkLqP~s 119 (321)
+...|.|.+|.=+-+.|+|++||.|.|.. -+.|. +.|+|..
T Consensus 10 V~~kGqItIPkeiR~~LgI~~GD~l~~~~--~~dG~-Iil~~~~ 50 (178)
T 2w1t_A 10 IDDLGRVVIPKEIRRTLRIREGDPLEIFV--DRDGD-VILKKYS 50 (178)
T ss_dssp CCTTSEEECCHHHHHHTTCCTTCEEEEEE--CTTSC-EEEEECC
T ss_pred ECCCceEEEcHHHHHHcCcCCCCEEEEEE--eCCCE-EEEEECC
Confidence 34679999999999999999999998864 34444 7778874
No 28
>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone, rotamase; NMR {Escherichia coli}
Probab=52.97 E-value=54 Score=28.03 Aligned_cols=92 Identities=12% Similarity=0.106 Sum_probs=55.5
Q ss_pred eeeEeCCCeEeccHHHHHHcCCCCCCeEEEEEeecCCcceEEEeeCCcCcCCccccHHHHHhhcccc---eecccCCEEE
Q 020791 73 LEFIAEEGMIYMPYWMMENLLLQEGDIVRVKNVTLPKGTYVKLQPHTKDFLDISNPKAILETTLRNY---SCLTTGDSIM 149 (321)
Q Consensus 73 LEF~A~EG~i~LP~WMm~~L~l~egd~V~v~~~~LPkGt~vkLqP~s~~FldIsnpKavLE~~LRny---s~LT~GD~I~ 149 (321)
++|.-..|. ++|.|--.=++++.|+.+.|... |. .+|- -.|+..|.+-.+..| ..|..|+++.
T Consensus 32 ~~f~lG~g~-vipG~eeaL~Gm~~Ge~~~v~ip--pe----------~aYG-~~~~~~v~~v~~~~f~~~~~~~~G~~~~ 97 (171)
T 2k8i_A 32 LDYLHGHGS-LISGLETALEGHEVGDKFDVAVG--AN----------DAYG-QYDENLVQRVPKDVFMGVDELQVGMRFL 97 (171)
T ss_dssp EEEETTSCS-SCSHHHHHHTTCCTTCEEEEEEE--TT----------TSSC-CCCTTSEEEEEGGGGTTSSCCCTTCEEE
T ss_pred EEEEECCCC-cchHHHHHHcCCCCCCEEEEEEC--cH----------HhcC-CCChhhEEEeeHHHCCcccCccCCcEEE
Confidence 445544444 58999999999999998887643 11 1121 122222222222233 2588999999
Q ss_pred EEECCEEEEEEEEEecCCCeeEEEeCceeeeecCCCC
Q 020791 150 VAYNNKKYYIDIIETKPSNAISIIETDCEVDFAPPLD 186 (321)
Q Consensus 150 I~yn~k~Y~l~V~e~kP~~aVsIIeTDleVDF~pPld 186 (321)
+.-.+..+...|+++. +..+.|||.-||-
T Consensus 98 ~~~~~G~~~~~V~~v~--------~~~V~vD~NHPLA 126 (171)
T 2k8i_A 98 AETDQGPVPVEITAVE--------DDHVVVDGNHMLA 126 (171)
T ss_dssp EEETTEEEEEEEEEEC--------SSEEEEESCCSSC
T ss_pred EECCCCcEEEEEEEEc--------CCEEEEeCCCCCC
Confidence 8876654555555543 5566788877764
No 29
>1eik_A RNA polymerase subunit RPB5; RPBH, OCSP, NESG, protein structure initiative, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: d.78.1.1
Probab=49.30 E-value=21 Score=27.58 Aligned_cols=31 Identities=16% Similarity=0.240 Sum_probs=27.4
Q ss_pred HHHHHHcCCCCCCeEEEEEeecCCcceEEEe
Q 020791 86 YWMMENLLLQEGDIVRVKNVTLPKGTYVKLQ 116 (321)
Q Consensus 86 ~WMm~~L~l~egd~V~v~~~~LPkGt~vkLq 116 (321)
.-+.+.+|+++||.|.|..-+--.|.||..+
T Consensus 43 DPvar~~G~k~GdVvkI~R~S~taG~~v~YR 73 (77)
T 1eik_A 43 DPVAKAIGAKRGDIVKIIRKSPTAEEFVTYR 73 (77)
T ss_dssp SHHHHGGGCCTTCEEEEEEEETTTEEEEEEE
T ss_pred CHhhHHhCCCCCCEEEEEECCCCCCCcEEEE
Confidence 4589999999999999999999999998765
No 30
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=47.92 E-value=12 Score=39.10 Aligned_cols=87 Identities=18% Similarity=0.211 Sum_probs=58.6
Q ss_pred CCCCCeeEEEEeCCCCCEEEEEEeeeEeCCCeEeccHHHHHHcCCCCCCeEEEEEeecCCcceEEEeeCCcCcCCccccH
Q 020791 50 HIDYPMLFELRNNAAERVSHCGVLEFIAEEGMIYMPYWMMENLLLQEGDIVRVKNVTLPKGTYVKLQPHTKDFLDISNPK 129 (321)
Q Consensus 50 ~i~~PmlFel~n~~~~r~thcGVLEF~A~EG~i~LP~WMm~~L~l~egd~V~v~~~~LPkGt~vkLqP~s~~FldIsnpK 129 (321)
....|..+.+...... +-|.|.|..-.|+.|+|.+||.|.|+..+- +.|.++..|.... ..-.
T Consensus 19 ~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~----~~~~ 81 (806)
T 1ypw_A 19 QKNRPNRLIVDEAINE------------DNSVVSLSQPKMDELQLFRGDTVLLKGKKR-REAVCIVLSDDTC----SDEK 81 (806)
T ss_dssp CCCCTTEEEEECCSSC------------CSSCEEECHHHHHHHTCCTTCEEEEEETTT-EECCEEEEECSSS----CTTE
T ss_pred ccCCCceEEEccCcCC------------cCCEEEECHHHHHHcCCCCCCEEEEecCcc-CcEEEEEecCCCC----CCCe
Confidence 3566777777643221 338999999999999999999999997632 2355655554211 1112
Q ss_pred HHHHhhcccceecccCCEEEEEEC
Q 020791 130 AILETTLRNYSCLTTGDSIMVAYN 153 (321)
Q Consensus 130 avLE~~LRnys~LT~GD~I~I~yn 153 (321)
..+-...|+-..+..||+|.|.--
T Consensus 82 ~~~~~~~~~~~~~~~~~~v~~~~~ 105 (806)
T 1ypw_A 82 IRMNRVVRNNLRVRLGDVISIQPC 105 (806)
T ss_dssp EECCHHHHTTTTCCTTCEEEEEEC
T ss_pred EEecHHHHhhcCCCCCCEEEEEEC
Confidence 224456677788999999998643
No 31
>1hmj_A RPB5, protein (subunit H); RNA polymerase, archaea; NMR {Methanocaldococcus jannaschii} SCOP: d.78.1.1
Probab=45.01 E-value=20 Score=27.77 Aligned_cols=30 Identities=23% Similarity=0.381 Sum_probs=26.3
Q ss_pred HHHHHcCCCCCCeEEEEEeecCCcceEEEe
Q 020791 87 WMMENLLLQEGDIVRVKNVTLPKGTYVKLQ 116 (321)
Q Consensus 87 WMm~~L~l~egd~V~v~~~~LPkGt~vkLq 116 (321)
-+++.+|+++||.|.|...+--.|.||..+
T Consensus 42 Pvar~~G~k~GdVvkI~R~S~taG~~v~YR 71 (78)
T 1hmj_A 42 PVIQEIGAKEGDVVRVIRKSPTAGVSIAYR 71 (78)
T ss_pred HhhHHhCCCCCCEEEEEECCCCCCCcEEEE
Confidence 488999999999999998888889888655
No 32
>2oyn_A Hypothetical protein MJ0056; structural genomics, unknown function, PSI-2, protein structure initiative; HET: CDP; 1.85A {Methanocaldococcus jannaschii DSM2661} SCOP: b.43.5.2 PDB: 2p3m_A 2vbs_A 2vbt_A* 2vbu_A* 2vbv_A*
Probab=43.88 E-value=20 Score=30.80 Aligned_cols=29 Identities=24% Similarity=0.483 Sum_probs=23.6
Q ss_pred EEEeeeEeCCCeEeccHHHHHHcCCCCCCeEEEEEe
Q 020791 70 CGVLEFIAEEGMIYMPYWMMENLLLQEGDIVRVKNV 105 (321)
Q Consensus 70 cGVLEF~A~EG~i~LP~WMm~~L~l~egd~V~v~~~ 105 (321)
-.|+|++|+.. +=+.|+|+.||.|.|+-.
T Consensus 105 ~~vlEIIAp~~-------LR~~L~LkDGD~V~I~v~ 133 (146)
T 2oyn_A 105 SEIIEIIAPMK-------LREQFNLKDGDVIKILIK 133 (146)
T ss_dssp EEEEEEECSSC-------HHHHHTCCTTCEEEEEEE
T ss_pred CCEEEEEcCcc-------hhhhcCCCCCCEEEEEEe
Confidence 46888887754 788999999999998753
No 33
>1a62_A RHO; transcription termination, termination, RNA binding domain, transcription regulation, OB fold, F1-ATPase; 1.55A {Escherichia coli BL21} SCOP: a.140.3.1 b.40.4.5 PDB: 1a63_A 2a8v_A 1a8v_A
Probab=41.33 E-value=19 Score=29.80 Aligned_cols=30 Identities=27% Similarity=0.310 Sum_probs=25.0
Q ss_pred CCeEeccHHHHHHcCCCCCCeEEEEEeecCC
Q 020791 79 EGMIYMPYWMMENLLLQEGDIVRVKNVTLPK 109 (321)
Q Consensus 79 EG~i~LP~WMm~~L~l~egd~V~v~~~~LPk 109 (321)
+.-||+|...++..+|..||.|...-. -|+
T Consensus 76 ~~DiyVs~~~irrf~lr~GD~V~g~vr-~~~ 105 (130)
T 1a62_A 76 PDDIYVSPSQIRRFNLRTGDTISGKIR-PPK 105 (130)
T ss_dssp TTCEEECHHHHHHTTCCTTCEEEEEEE-CCC
T ss_pred CCCEEECHHHHhHhCCCCCCEEEEEEe-CCC
Confidence 457999999999999999999988744 344
No 34
>2ki8_A Tungsten formylmethanofuran dehydrogenase, subunit D (FWDD-2); beta-barrel, structural genomics, PSI-2, protein structure initiative; NMR {Archaeoglobus fulgidus}
Probab=40.40 E-value=21 Score=29.61 Aligned_cols=29 Identities=31% Similarity=0.162 Sum_probs=25.5
Q ss_pred CCCeEeccHHHHHHcCCCCCCeEEEEEee
Q 020791 78 EEGMIYMPYWMMENLLLQEGDIVRVKNVT 106 (321)
Q Consensus 78 ~EG~i~LP~WMm~~L~l~egd~V~v~~~~ 106 (321)
++..|.|-.=-++.|||++||.|+|.+..
T Consensus 51 ~~~~v~inp~dA~~lGI~dGd~V~V~s~~ 79 (146)
T 2ki8_A 51 AVNYAEINEEDWNALGLQEGDRVKVKTEF 79 (146)
T ss_dssp SSSEEEECHHHHHHHTCCTTCEEEEECSS
T ss_pred CCCEEEECHHHHHHcCCCCCCEEEEEeCC
Confidence 46789999999999999999999998753
No 35
>3o27_A Putative uncharacterized protein; swapped-hairpin fold, transcription factor, DNA binding PROT; 2.80A {Sulfolobus islandicus}
Probab=35.57 E-value=33 Score=26.01 Aligned_cols=26 Identities=15% Similarity=0.147 Sum_probs=22.1
Q ss_pred CCeEeccHHHHHHcCCCCCCeEEEEE
Q 020791 79 EGMIYMPYWMMENLLLQEGDIVRVKN 104 (321)
Q Consensus 79 EG~i~LP~WMm~~L~l~egd~V~v~~ 104 (321)
.=.+.+|.=+.+.|+|++||.+.++.
T Consensus 24 tyYInIPaeI~kaLgIk~gD~fel~v 49 (68)
T 3o27_A 24 TFYLLIPKDIAEALDIKPDDTFILNM 49 (68)
T ss_dssp CEEEEECHHHHHHTTCCTTCCEEEEE
T ss_pred EEEEeCcHHHHHHhCCCCCCEEEEEE
Confidence 34688999999999999999877654
No 36
>2fhd_A RAD9 homolog, DNA repair protein RHP9/CRB2; tamdem tudor domains, cell cycle; HET: DNA MSE PO4; 2.40A {Schizosaccharomyces pombe}
Probab=35.52 E-value=11 Score=32.74 Aligned_cols=31 Identities=19% Similarity=0.299 Sum_probs=25.5
Q ss_pred ccHHHHHHcCCCCCCeEEEEEeecCCcceEEEe
Q 020791 84 MPYWMMENLLLQEGDIVRVKNVTLPKGTYVKLQ 116 (321)
Q Consensus 84 LP~WMm~~L~l~egd~V~v~~~~LPkGt~vkLq 116 (321)
+.---|+.|.|+.||.|.|. .+||.+++-.-
T Consensus 54 V~~~~vk~LeLRiGD~VKVd--~vpK~~hiVvG 84 (153)
T 2fhd_A 54 VNSNQIKRFFLKKGDVVQST--RLGKIKHTVVK 84 (153)
T ss_dssp EETTSEEESCCCTTCEEEET--TSTTCCEEEEE
T ss_pred cChhhceeeeeecCCEEEEC--CCCCccEEEEE
Confidence 33445678999999999999 99999998653
No 37
>3fdr_A Tudor and KH domain-containing protein; TDRD2, structural genomics, structural genomics consortium, SGC, alternative splicing, RNA-binding; 1.75A {Homo sapiens} SCOP: b.34.9.1
Probab=34.86 E-value=57 Score=24.65 Aligned_cols=34 Identities=15% Similarity=0.279 Sum_probs=26.4
Q ss_pred eecccCCEEEEEE--CCEEEEEEEEEecCCCeeEEE
Q 020791 140 SCLTTGDSIMVAY--NNKKYYIDIIETKPSNAISII 173 (321)
Q Consensus 140 s~LT~GD~I~I~y--n~k~Y~l~V~e~kP~~aVsII 173 (321)
..+.+||.....| +++-|.-.|+++.+...+.|.
T Consensus 26 ~~~~~G~~c~a~~~~d~~wyRA~I~~~~~~~~~~V~ 61 (94)
T 3fdr_A 26 LTVHVGDIVAAPLPTNGSWYRARVLGTLENGNLDLY 61 (94)
T ss_dssp CCCCTTCEEEEEETTTTEEEEEEEEEECTTSCEEEE
T ss_pred CCCCCCCEEEEEECCCCeEEEEEEEEECCCCeEEEE
Confidence 3578999999998 789999999998754444333
No 38
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}
Probab=34.08 E-value=60 Score=23.76 Aligned_cols=54 Identities=17% Similarity=0.289 Sum_probs=37.0
Q ss_pred cCCCCCCeEEEEEe-ecCCcceEEEeeCCcCcCCccccHHHHHhhcccceecccCCEEEEE
Q 020791 92 LLLQEGDIVRVKNV-TLPKGTYVKLQPHTKDFLDISNPKAILETTLRNYSCLTTGDSIMVA 151 (321)
Q Consensus 92 L~l~egd~V~v~~~-~LPkGt~vkLqP~s~~FldIsnpKavLE~~LRnys~LT~GD~I~I~ 151 (321)
|.++.|+.+.-+-. -.+-|-||.|.+.-..|+-+++... ..+..+..||.|.+.
T Consensus 1 m~~~~G~iv~G~V~~v~~~G~fV~l~~~~~Gllh~sel~~------~~~~~~~~Gd~V~v~ 55 (80)
T 2k52_A 1 MDVEPGKFYKGVVTRIEKYGAFINLNEQVRGLLRPRDMIS------LRLENLNVGDEIIVQ 55 (80)
T ss_dssp CCCCTTCEEEEEEEEEETTEEEEEEETTEEEEECGGGCSS------CCGGGCCTTCEEEEE
T ss_pred CCCCCCCEEEEEEEEEeCCEEEEEECCCCEEEEEHHHCCc------ccceeeCCCCEEEEE
Confidence 45678998876654 4789999999876666765554310 011578999999864
No 39
>1ss6_A P47, NSFL1 cofactor P47, P47 protein, P97; , SEP, signaling protein; NMR {Homo sapiens} SCOP: d.245.1.1
Probab=33.75 E-value=9.2 Score=30.78 Aligned_cols=14 Identities=36% Similarity=0.724 Sum_probs=12.1
Q ss_pred cccceeeeccccCC
Q 020791 215 KFSPFTGVARRLDG 228 (321)
Q Consensus 215 ~~~~F~G~G~rLdG 228 (321)
.+.+|+|.|+||++
T Consensus 81 ~~~~F~G~G~~LGs 94 (102)
T 1ss6_A 81 AFKAFTGEGQKLGS 94 (102)
T ss_dssp SSTTSCSSSSSGGG
T ss_pred cccCCcccCeECCC
Confidence 46789999999985
No 40
>3db3_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, tandem tudor domains, LI metal binding, DNA replication; HET: M3L; 2.40A {Homo sapiens} PDB: 3db4_A 2l3r_A*
Probab=33.25 E-value=48 Score=28.96 Aligned_cols=32 Identities=25% Similarity=0.432 Sum_probs=24.1
Q ss_pred hhcccceecccCCEEEEEEC-------CEEEEEEEEEec
Q 020791 134 TTLRNYSCLTTGDSIMVAYN-------NKKYYIDIIETK 165 (321)
Q Consensus 134 ~~LRnys~LT~GD~I~I~yn-------~k~Y~l~V~e~k 165 (321)
+++-.+.-|.+|+.++|+|| +--|...|.+.+
T Consensus 85 Rt~l~w~~L~vGqvVMvNYN~d~PkerGfWYDaeI~~~~ 123 (161)
T 3db3_A 85 RTIIKWQDLEVGQVVMLNYNPDNPKERGFWYDAEISRKR 123 (161)
T ss_dssp CCBCCGGGCCTTCEEEEEECSSSTTSCCEEEEEEEEEEE
T ss_pred EEeccHHHCCcCcEEEEecCCCCccccceeEEEEEeeeh
Confidence 34446788999999999999 346777777654
No 41
>1yle_A Arginine N-succinyltransferase, alpha chain; structural genomics, acyltransferase, arginine metabolism, protein structure initiative; 1.70A {Pseudomonas aeruginosa} SCOP: d.108.1.8
Probab=32.89 E-value=40 Score=32.51 Aligned_cols=44 Identities=25% Similarity=0.254 Sum_probs=32.7
Q ss_pred EEEEeCCC--CCEEEEEEeeeEeCCCe-EeccHHHHHHcCCCCCCeEEEE
Q 020791 57 FELRNNAA--ERVSHCGVLEFIAEEGM-IYMPYWMMENLLLQEGDIVRVK 103 (321)
Q Consensus 57 Fel~n~~~--~r~thcGVLEF~A~EG~-i~LP~WMm~~L~l~egd~V~v~ 103 (321)
+-|.|..- =|.| +.+...+.+. +.|+.-+++.|++++||.|++-
T Consensus 292 ~lv~n~~~~~FRa~---~~~~~~~~~~~~~l~~~~a~aL~v~~Gd~vr~~ 338 (342)
T 1yle_A 292 YLVTNGQLQDFRAV---VLDLDWAPGKPVALSVEAAEALGVGEGASVRLV 338 (342)
T ss_dssp EEEECCCSTTCCEE---EEEECCCTTSCEEECHHHHHHHTCCTTCEEEEE
T ss_pred EEEECCCccCeeEE---EeccccCCCCeEecCHHHHHhcCCCCCCEEEEE
Confidence 55666543 2433 4565666677 8999999999999999999874
No 42
>4duh_A DNA gyrase subunit B; structure-based drug design, antibacterial, DNA gyrase B, GY isomerase-isomerase inhibitor complex; HET: DNA RLI; 1.50A {Escherichia coli} PDB: 1aj6_A* 1kzn_A* 3g7e_A*
Probab=32.48 E-value=41 Score=30.03 Aligned_cols=48 Identities=31% Similarity=0.408 Sum_probs=40.8
Q ss_pred ecCCcceEEEeeCCcCcCCc-cccHHHHHhhcccceecccCCEEEEEEC
Q 020791 106 TLPKGTYVKLQPHTKDFLDI-SNPKAILETTLRNYSCLTTGDSIMVAYN 153 (321)
Q Consensus 106 ~LPkGt~vkLqP~s~~FldI-snpKavLE~~LRnys~LT~GD~I~I~yn 153 (321)
.-+.||-|.|+|--.-|... .---..|...||.++-|..|=.|.+...
T Consensus 160 ~~~~GT~V~F~Pd~~~F~~~~~~~~~~l~~rlrelA~ln~gv~i~l~de 208 (220)
T 4duh_A 160 TEKTGTMVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDK 208 (220)
T ss_dssp CSCCEEEEEEEECTTTCCSSCSCCHHHHHHHHHHHHHHCTTSEEEEEET
T ss_pred cCCCCcEEEEEECHHHhCCcccCCHHHHHHHHHHHHhcCCCCEEEEEcc
Confidence 46899999999998889865 5566789999999999999988887754
No 43
>2z0t_A Putative uncharacterized protein PH0355; alpha/beta protein, RNA binding protein, structural genomics, NPPSFA; 1.80A {Pyrococcus horikoshii} PDB: 1s04_A
Probab=32.43 E-value=20 Score=29.21 Aligned_cols=39 Identities=21% Similarity=0.283 Sum_probs=26.8
Q ss_pred ccccHHHHHhhcc--cceecccCCEEEEEECCEEEEEEEEEec
Q 020791 125 ISNPKAILETTLR--NYSCLTTGDSIMVAYNNKKYYIDIIETK 165 (321)
Q Consensus 125 IsnpKavLE~~LR--nys~LT~GD~I~I~yn~k~Y~l~V~e~k 165 (321)
|.+=+...|-+|. +|..+.+||+|.+ +++.....|++++
T Consensus 15 I~~G~KtiEiRlnd~k~~~ikvGD~I~f--~~~~l~~~V~~v~ 55 (109)
T 2z0t_A 15 IKAGKKKIEGRLYDEKRRQIKPGDIIIF--EGGKLKVKVKGIR 55 (109)
T ss_dssp HHTTSCCEEEEECCTTGGGCCTTCEEEE--GGGTEEEEEEEEE
T ss_pred HHcCCCEEEEEecchhhhcCCCCCEEEE--CCCEEEEEEEEEE
Confidence 3333344455555 6999999999999 5656777777764
No 44
>3ttz_A DNA gyrase subunit B; protein-inhibitor complex, ATP-binding, structure-based drug antimicrobial, isomerase-isomerase inhibitor complex; HET: DNA 07N; 1.63A {Staphylococcus aureus} PDB: 3u2d_A* 3u2k_A* 3g75_A* 3g7b_A*
Probab=32.42 E-value=43 Score=29.31 Aligned_cols=47 Identities=17% Similarity=0.239 Sum_probs=39.3
Q ss_pred cCCcceEEEeeCCcCcC-CccccHHHHHhhcccceecccCCEEEEEEC
Q 020791 107 LPKGTYVKLQPHTKDFL-DISNPKAILETTLRNYSCLTTGDSIMVAYN 153 (321)
Q Consensus 107 LPkGt~vkLqP~s~~Fl-dIsnpKavLE~~LRnys~LT~GD~I~I~yn 153 (321)
-+.||-|.|+|--.-|+ ...---..|...||.++.|..|=.|.+...
T Consensus 134 ~~~GT~V~F~Pd~~iF~~~~~~~~~~l~~rlrelA~ln~gv~i~l~de 181 (198)
T 3ttz_A 134 DKTGTVIRFKADGEIFTETTVYNYETLQQRIRELAFLNKGIQITLRDE 181 (198)
T ss_dssp SCCEEEEEEEECTTTCCSCCCCCHHHHHHHHHHHHHHSTTCEEEEEEC
T ss_pred CCCCcEEEEEECHHHhccCCccCHHHHHHHHHHHhhcCCCCEEEEEee
Confidence 48999999999998995 444456779999999999999988888754
No 45
>4ayb_H DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_H 2y0s_H 2waq_H 4b1o_H 4b1p_Z 2pmz_H 3hkz_H
Probab=31.84 E-value=56 Score=25.38 Aligned_cols=31 Identities=19% Similarity=0.245 Sum_probs=25.6
Q ss_pred HHHHHHcCCCCCCeEEEEEeecCCcceEEEe
Q 020791 86 YWMMENLLLQEGDIVRVKNVTLPKGTYVKLQ 116 (321)
Q Consensus 86 ~WMm~~L~l~egd~V~v~~~~LPkGt~vkLq 116 (321)
.-+.+.+|+++||+|.|.-.+---|.++-.+
T Consensus 49 DPva~~~g~k~GdVvkI~R~S~tag~~~~YR 79 (84)
T 4ayb_H 49 DPVARSINAKPGDIIRIIRKSQLYGEVVSYR 79 (84)
T ss_dssp SHHHHHHTCCTTCEEEEEEEETTTEEEEEEE
T ss_pred CHhHHhhCCCCCCEEEEEEcCCCCCccEEEE
Confidence 3488899999999999998887788877543
No 46
>3idw_A Actin cytoskeleton-regulatory complex protein SLA; clathrin adaptor, endocytosis, SAM domain, yeast, actin-BIND membrane, endosome; 1.85A {Saccharomyces cerevisiae}
Probab=31.73 E-value=2.7 Score=32.34 Aligned_cols=16 Identities=63% Similarity=0.837 Sum_probs=14.1
Q ss_pred HHHHHcCCCCCCeEEE
Q 020791 87 WMMENLLLQEGDIVRV 102 (321)
Q Consensus 87 WMm~~L~l~egd~V~v 102 (321)
=+++.|||.+||+|+|
T Consensus 42 ~~Lr~LGi~eGDIIrV 57 (72)
T 3idw_A 42 SMLRTLGLREGDIVRV 57 (72)
T ss_dssp HHHHHTTCCHHHHHHH
T ss_pred HHHHHcCCchhhHHHH
Confidence 4899999999999876
No 47
>2ln7_A LPXTG-SITE transpeptidase family protein; sortase, sortase family D, enzyme, protein binding; NMR {Bacillus anthracis}
Probab=30.87 E-value=54 Score=27.10 Aligned_cols=26 Identities=27% Similarity=0.482 Sum_probs=21.7
Q ss_pred eecccCCEEEEEECCEEEEEEEEEec
Q 020791 140 SCLTTGDSIMVAYNNKKYYIDIIETK 165 (321)
Q Consensus 140 s~LT~GD~I~I~yn~k~Y~l~V~e~k 165 (321)
.-|..||.|.|...++.|...|.+++
T Consensus 74 ~~l~~GD~i~v~~~~~~~~Y~V~~~~ 99 (147)
T 2ln7_A 74 GQLKEKDTLVLEYDNKTYTYEIQKIW 99 (147)
T ss_dssp HHSSTTCEEEEEETTEEEEEEEEEEE
T ss_pred hcccCCCEEEEEECCcEEEEEEEeEE
Confidence 34779999999999999988887653
No 48
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=28.56 E-value=1e+02 Score=30.92 Aligned_cols=84 Identities=13% Similarity=0.167 Sum_probs=58.4
Q ss_pred EEEEeCCCCCEEEEEEeeeEeCCCeEeccHHHHHHcCCCCCCeEEEEEeecCCcceEEEeeCCcCcCCccccHHHHHhhc
Q 020791 57 FELRNNAAERVSHCGVLEFIAEEGMIYMPYWMMENLLLQEGDIVRVKNVTLPKGTYVKLQPHTKDFLDISNPKAILETTL 136 (321)
Q Consensus 57 Fel~n~~~~r~thcGVLEF~A~EG~i~LP~WMm~~L~l~egd~V~v~~~~LPkGt~vkLqP~s~~FldIsnpKavLE~~L 136 (321)
|+.-.+.+++.++||-.-+....-..-|=..|.+.||+.++..+++- =.++|.. .-.|.|++.-|+.+|
T Consensus 135 lK~yDp~~q~L~~~G~~~v~~~~kv~~l~~~i~~~~g~p~dt~l~ly---------EEi~~~~--ie~l~~~~~t~~~~~ 203 (530)
T 2ylm_A 135 LKMYDPKTRSLNYCGHIYTPISCKIRDLLPVMCDRAGFIQDTSLILY---------EEVKPNL--TERIQDYDVSLDKAL 203 (530)
T ss_dssp EEEEETTTTEEEEEEEEEEETTCBGGGTHHHHHHHHTCCTTCCEEEE---------EEEETTE--EEECCCSSSBHHHHS
T ss_pred EEeeCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHcCCCCCCceEEE---------EecCCCc--eeEcccccccHHHHH
Confidence 46666777888999999998776666677889999999998777662 2333321 112344555555554
Q ss_pred ccceecccCCEEEEEECC
Q 020791 137 RNYSCLTTGDSIMVAYNN 154 (321)
Q Consensus 137 Rnys~LT~GD~I~I~yn~ 154 (321)
..|..||+|.+.-.+
T Consensus 204 ---~eL~~GdII~fQ~~~ 218 (530)
T 2ylm_A 204 ---DELMDGDIIVFQKDD 218 (530)
T ss_dssp ---TTCCTTEEEEEEECC
T ss_pred ---hcccCCCEEEEEecC
Confidence 578899999987543
No 49
>4emv_A DNA topoisomerase IV, B subunit; protein-inhibitor complex, ATP binding, structure-based drug antimicrobial, virtual screen; HET: DNA 0R9; 1.70A {Streptococcus pneumoniae GA47373} PDB: 4em7_A*
Probab=28.12 E-value=48 Score=29.76 Aligned_cols=47 Identities=15% Similarity=0.157 Sum_probs=39.6
Q ss_pred cCCcceEEEeeCCcCcCCccccHHHHHhhcccceecccCCEEEEEEC
Q 020791 107 LPKGTYVKLQPHTKDFLDISNPKAILETTLRNYSCLTTGDSIMVAYN 153 (321)
Q Consensus 107 LPkGt~vkLqP~s~~FldIsnpKavLE~~LRnys~LT~GD~I~I~yn 153 (321)
-+.||.|.|.|--.-|-...--...|...||.++.|..|=.|.+...
T Consensus 168 ~~~GT~V~F~PD~~iF~~~~~~~~~l~~rlrelA~ln~gv~i~l~de 214 (226)
T 4emv_A 168 SKTGTKVTFMPDATIFSTTDFKYNTISERLNESAFLLKNVTLSLTDK 214 (226)
T ss_dssp TCCEEEEEEEECTTTCSCCCCCHHHHHHHHHHHHHHHCSCEEEEEET
T ss_pred CCCCeEEEEEECHHHcCCCCcCHHHHHHHHHHHhhcCCCCEEEEEec
Confidence 67999999999888886555557789999999999999988877654
No 50
>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein, rotamase; NMR {Helicobacter pylori}
Probab=27.93 E-value=2e+02 Score=23.68 Aligned_cols=92 Identities=21% Similarity=0.174 Sum_probs=51.5
Q ss_pred eeeEeCCCeEeccHHHHHHcCCCCCCeEEEEEeecCCcceEEEeeCCcCcCCccccHHHHHhhcccc--eecccCCEEEE
Q 020791 73 LEFIAEEGMIYMPYWMMENLLLQEGDIVRVKNVTLPKGTYVKLQPHTKDFLDISNPKAILETTLRNY--SCLTTGDSIMV 150 (321)
Q Consensus 73 LEF~A~EG~i~LP~WMm~~L~l~egd~V~v~~~~LPkGt~vkLqP~s~~FldIsnpKavLE~~LRny--s~LT~GD~I~I 150 (321)
++|.--.|. ++|.|=-.=++++.|+...|..- . ..+|-+ .|+..|.+-....| ..|..|+.+.+
T Consensus 37 ~~f~~G~g~-vipg~e~aL~gm~~Ge~~~v~ip---p---------~~aYG~-~~~~~v~~v~~~~f~~~~~~~G~~~~~ 102 (151)
T 2kr7_A 37 LEFIIGTNQ-IIAGLEKAVLKAQIGEWEEVVIA---P---------EEAYGV-YESSYLQEVPRDQFEGIELEKGMSVFG 102 (151)
T ss_dssp EEEETTCCC-SCHHHHHHHTTCCBTCEEEEEEC---G---------GGTTCS-SCSCEEEEEEGGGGTTSCCCTTCEEEE
T ss_pred EEEEECCCC-ccHHHHHHHcCCCCCCEEEEEEe---c---------HHHcCC-CCcceEEEEcHHHcCCCCCccCCEEEE
Confidence 455554454 58999999999999998887642 1 111211 12222222222222 24777888877
Q ss_pred EEC-CEEEEEEEEEecCCCeeEEEeCceeeeecCCCC
Q 020791 151 AYN-NKKYYIDIIETKPSNAISIIETDCEVDFAPPLD 186 (321)
Q Consensus 151 ~yn-~k~Y~l~V~e~kP~~aVsIIeTDleVDF~pPld 186 (321)
.-. +..+...|+++. +..+.|||--||-
T Consensus 103 ~~~~G~~~~~~V~~v~--------~~~v~vD~NHPLA 131 (151)
T 2kr7_A 103 QTEDNQTIQAIIKDFS--------ATHVMVDYNHPLA 131 (151)
T ss_dssp EETTTEEEEEEEEEEC--------SSEEEEEECCTTS
T ss_pred ECCCCCEEEEEEEEEC--------CCEEEEECCCcCC
Confidence 653 344555555544 4455677776653
No 51
>3k3s_A Altronate hydrolase; structural genomics, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 2.15A {Shigella flexneri 2a str}
Probab=27.70 E-value=18 Score=29.49 Aligned_cols=32 Identities=25% Similarity=0.267 Sum_probs=25.6
Q ss_pred ccHHHHHHcCCCCCCeEEEEEeecCCcceEEE
Q 020791 84 MPYWMMENLLLQEGDIVRVKNVTLPKGTYVKL 115 (321)
Q Consensus 84 LP~WMm~~L~l~egd~V~v~~~~LPkGt~vkL 115 (321)
|=..||+.|.|.+.|.|.|-...|++|+-+.+
T Consensus 17 ~~~~~m~~I~i~p~DNVaVAl~~L~aG~~v~~ 48 (105)
T 3k3s_A 17 LYFQGMQYIKIHALDNVAVALADLAEGTEVSV 48 (105)
T ss_dssp ----CCSEECCSTTCSEEEESSCBCTTCEEEE
T ss_pred hhhhcCCEEEcCCCCCEEEecCccCCCCEEee
Confidence 44579999999999999999889999998764
No 52
>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli}
Probab=26.61 E-value=1.9e+02 Score=24.64 Aligned_cols=92 Identities=18% Similarity=0.098 Sum_probs=53.6
Q ss_pred EeeeEeCCCeEeccHHHHHHcCCCCCCeEEEEEeecCCcceEEEeeCCcCcCCccccHHHHHhhcccce---ecccCCEE
Q 020791 72 VLEFIAEEGMIYMPYWMMENLLLQEGDIVRVKNVTLPKGTYVKLQPHTKDFLDISNPKAILETTLRNYS---CLTTGDSI 148 (321)
Q Consensus 72 VLEF~A~EG~i~LP~WMm~~L~l~egd~V~v~~~~LPkGt~vkLqP~s~~FldIsnpKavLE~~LRnys---~LT~GD~I 148 (321)
-++|.--.|. ++|-|--.=++++.|+...|..- -...|-+ .|+..|.+--...|. .|..|+.|
T Consensus 54 P~~f~lG~g~-vipG~eeaL~gm~~Ge~~~v~Ip------------p~~AYG~-~~~~lv~~vp~~~f~~~~~~~~G~~~ 119 (169)
T 4dt4_A 54 PALFRLGDAS-LSEGLEQHLLGLKVGDKTTFSLE------------PDAAFGV-PSPDLIQYFSRREFMDAGEPEIGAIM 119 (169)
T ss_dssp CEEEETTSSS-SCHHHHHHHTTCCTTCEEEEEEC------------GGGTTCC-CCGGGEEEEEGGGGTTTCCCCTTCEE
T ss_pred CEEEEECCCC-ccHHHHHHHcCCCCCCEEEEEEC------------hHHhcCC-CChHHEEEeCHHHCCCcCCCCCCcEE
Confidence 3556655554 57999999999999998876542 1112221 233333322222332 36778888
Q ss_pred EEEEC-CEEEEEEEEEecCCCeeEEEeCceeeeecCCC
Q 020791 149 MVAYN-NKKYYIDIIETKPSNAISIIETDCEVDFAPPL 185 (321)
Q Consensus 149 ~I~yn-~k~Y~l~V~e~kP~~aVsIIeTDleVDF~pPl 185 (321)
.+.-. +..+...|+++. +..+.|||.-||
T Consensus 120 ~~~~~~G~~~~~~V~~v~--------~~~V~vD~NHPL 149 (169)
T 4dt4_A 120 LFTAMDGSEMPGVIREIN--------GDSITVDFNHPL 149 (169)
T ss_dssp EEECTTSCEEEEEEEEEE--------TTEEEEECSCTT
T ss_pred EEECCCCCEEEEEEEEEc--------CCEEEEeCCCcc
Confidence 87653 345555665543 455667776665
No 53
>1b12_A Signal peptidase I; serine proteinase, serine-dependant hydrolase, signal peptid processing, protein translocation; HET: 1PN; 1.95A {Escherichia coli} SCOP: b.87.1.2 PDB: 3s04_A* 1t7d_A* 3iiq_A* 1kn9_A*
Probab=26.21 E-value=82 Score=27.90 Aligned_cols=46 Identities=17% Similarity=0.234 Sum_probs=31.4
Q ss_pred cccceecccCCEEEEEECC--EEEEEEEEEecCCCeeEEEeC--ceeeee
Q 020791 136 LRNYSCLTTGDSIMVAYNN--KKYYIDIIETKPSNAISIIET--DCEVDF 181 (321)
Q Consensus 136 LRnys~LT~GD~I~I~yn~--k~Y~l~V~e~kP~~aVsIIeT--DleVDF 181 (321)
|..+..+..||+|.+.+.. ..+.++-+---|++.|+|.+- -+-|+=
T Consensus 44 l~~~~~~~rGDIvvf~~p~~~~~~~iKRViglpGD~v~i~~~~~~l~ING 93 (248)
T 1b12_A 44 LIETGHPKRGDIVVFKYPEDPKLDYIKRAVGLPGDKVTYDPVSKELTIQP 93 (248)
T ss_dssp EEEECCCCTTCEEEEECTTCTTSEEEEEEEECTTCEEEEETTTTEEEEET
T ss_pred ccccCCCCCCcEEEEEeCCCCCceEEEEEEeeCCCEEEEEcCceEEEECC
Confidence 3345568899999999852 345555444469999999888 555553
No 54
>1t2w_A Sortase; transpeptidase, beta barrel, hydrolase; 1.80A {Staphylococcus aureus} SCOP: b.100.1.1 PDB: 1t2o_A 1ija_A 2kid_A* 1t2p_A
Probab=24.33 E-value=91 Score=25.43 Aligned_cols=24 Identities=8% Similarity=0.135 Sum_probs=20.5
Q ss_pred ecccCCEEEEEECCEEEEEEEEEe
Q 020791 141 CLTTGDSIMVAYNNKKYYIDIIET 164 (321)
Q Consensus 141 ~LT~GD~I~I~yn~k~Y~l~V~e~ 164 (321)
-|.+||.|.|...++.|...|.++
T Consensus 74 ~l~~Gd~i~v~~~~~~~~Y~V~~~ 97 (145)
T 1t2w_A 74 AAKKGSMVYFKVGNETRKYKMTSI 97 (145)
T ss_dssp GCCTTCEEEEEETTEEEEEEEEEE
T ss_pred hCCCCCEEEEEECCEEEEEEEEEE
Confidence 356999999999999998888765
No 55
>2ozi_A Hypothetical protein RPA4178; APC6210, putative protein RPA4178, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.15A {Rhodopseudomonas palustris CGA009} PDB: 3lag_A*
Probab=24.31 E-value=25 Score=27.04 Aligned_cols=53 Identities=25% Similarity=0.355 Sum_probs=34.1
Q ss_pred CCCCeEEEEEeecCCcceEEEeeCCcCcCCccccHHHHHhhccc--------ceecccCCEEEEE
Q 020791 95 QEGDIVRVKNVTLPKGTYVKLQPHTKDFLDISNPKAILETTLRN--------YSCLTTGDSIMVA 151 (321)
Q Consensus 95 ~egd~V~v~~~~LPkGt~vkLqP~s~~FldIsnpKavLE~~LRn--------ys~LT~GD~I~I~ 151 (321)
-+++.++|..++|+.|...-..-|..+|.=+ .+++-.|+- -..|..||++.+.
T Consensus 12 ~~~~~v~v~~~~l~PG~~~~~H~H~~~~~iv----~v~~G~~~~~~~dG~~~~~~l~aGd~~~~p 72 (98)
T 2ozi_A 12 IDNDEVRVTEWRLPPGSATGHHTHGMDYVVV----PMADGEMTIVAPDGTRSLAQLKTGRSYARK 72 (98)
T ss_dssp EESSSEEEEEEEECTTEECCSEECCSCEEEE----ESSCBC-CEECTTSCEECCCBCTTCCEEEC
T ss_pred EeCCcEEEEEEEECCCCccCcEeCCCCEEEE----EEeeEEEEEEeCCCcEEEEEECCCCEEEEC
Confidence 4578899999999999987666665554211 112333331 2368899988874
No 56
>3ntk_A Maternal protein tudor; tudor domain, OB-fold, GERM cell formation, transcription; 1.80A {Drosophila melanogaster} PDB: 3nth_A* 3nti_A*
Probab=24.27 E-value=2e+02 Score=23.96 Aligned_cols=37 Identities=16% Similarity=0.161 Sum_probs=28.5
Q ss_pred eecccCCEEEEEE--CCEEEEEEEEEecCCCeeEEEeCc
Q 020791 140 SCLTTGDSIMVAY--NNKKYYIDIIETKPSNAISIIETD 176 (321)
Q Consensus 140 s~LT~GD~I~I~y--n~k~Y~l~V~e~kP~~aVsIIeTD 176 (321)
.....||.....| +++-|.-.|+++.+.+.+.|.=.|
T Consensus 46 ~~~~~G~~c~A~~~~d~~wyRa~I~~~~~~~~~~V~fvD 84 (169)
T 3ntk_A 46 SDLKEGALCVAQFPEDEVFYRAQIRKVLDDGKCEVHFID 84 (169)
T ss_dssp CCCCTTCEEEEEETTTTEEEEEEEEEECSTTCEEEEETT
T ss_pred CCCCCCCEEEEEECCCCcEEEEEEEEECCCCEEEEEEEe
Confidence 4678999999998 579999999999886645444333
No 57
>2loj_A Putative cytoplasmic protein; pathogenic bacterial protein, PSI-biology, northeast structu genomics consortium (NESG); NMR {Salmonella enterica subsp}
Probab=23.99 E-value=92 Score=23.21 Aligned_cols=22 Identities=14% Similarity=0.391 Sum_probs=18.8
Q ss_pred cccCCEEEEEECCEEEEEEEEE
Q 020791 142 LTTGDSIMVAYNNKKYYIDIIE 163 (321)
Q Consensus 142 LT~GD~I~I~yn~k~Y~l~V~e 163 (321)
|--+..|.|.|++..|.|++..
T Consensus 34 l~g~~~v~I~H~G~~Y~LR~Tr 55 (63)
T 2loj_A 34 LGPDGKVIIDHNGQEYLLRKTQ 55 (63)
T ss_dssp STTTCEEEEEETTEEEEEEEET
T ss_pred hCCCCEEEEEeCCeEEEeEEcc
Confidence 5567899999999999999864
No 58
>3dlm_A Histone-lysine N-methyltransferase setdb1; setdb1_human, structural genomics, structural genomics consortium, SGC, alternative splicing; 1.77A {Homo sapiens}
Probab=22.27 E-value=1.7e+02 Score=26.43 Aligned_cols=63 Identities=19% Similarity=0.270 Sum_probs=46.8
Q ss_pred EEeeCCcCcCCccc--cHHHHHhhcccce-----ecccCCEEEEEECCEEEEEEEEEecCCCeeEEEeCc
Q 020791 114 KLQPHTKDFLDISN--PKAILETTLRNYS-----CLTTGDSIMVAYNNKKYYIDIIETKPSNAISIIETD 176 (321)
Q Consensus 114 kLqP~s~~FldIsn--pKavLE~~LRnys-----~LT~GD~I~I~yn~k~Y~l~V~e~kP~~aVsIIeTD 176 (321)
.-+|...-+-||.+ -+.+....|+.|+ -|..|..|.++.|++-+.-.|+++.=+=+.-.-++|
T Consensus 124 Vc~~s~~vW~di~~~~~r~FIk~YL~~yP~rpmv~~~~GQ~i~~E~~g~w~~~~V~~vD~SLv~v~f~~d 193 (213)
T 3dlm_A 124 ICRPLKKTWEDIEDISCRDFIEEYVTAYPNRPMVLLKSGQLIKTEWEGTWWKSRVEEVDGSLVRILFLDD 193 (213)
T ss_dssp BSSCCSSGGGGCSCHHHHHHHHHHHHHTTCCCCCCCCTTCEEEEEETTEEEEEEEEEEETTEEEEEETTT
T ss_pred EEEcccchhhhcCcchhHHHHHHHHHhCCCCceEEcCCCCEEEEEecCcEEEEEEEEEcceeEEEEEcCC
Confidence 34444433447886 3899999999766 389999999999999999999998755554444544
No 59
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=21.84 E-value=38 Score=29.03 Aligned_cols=92 Identities=12% Similarity=0.034 Sum_probs=54.0
Q ss_pred CCeeEEEEeCCCCCEEEEEEeeeEeCCCeEec-cHHHHHHcCCCCCCeEEEEEee-cCCcceEEEee----------CCc
Q 020791 53 YPMLFELRNNAAERVSHCGVLEFIAEEGMIYM-PYWMMENLLLQEGDIVRVKNVT-LPKGTYVKLQP----------HTK 120 (321)
Q Consensus 53 ~PmlFel~n~~~~r~thcGVLEF~A~EG~i~L-P~WMm~~L~l~egd~V~v~~~~-LPkGt~vkLqP----------~s~ 120 (321)
.|=+|.. ...-+.+.+|+++.. ...+.+ |. --.....+ ||+|.-+-++ -+.|-||.|.+ .-.
T Consensus 19 G~Gty~~--~~~i~as~~G~v~~~--~~~v~V~~~-~~~~y~p~-GdiV~G~V~~V~~~ga~V~I~~v~~~~~~~~~~~~ 92 (179)
T 3m7n_A 19 GEGVYEE--GGELFAAVAGKLIIK--DRVAKVESI-SPIPEIVK-GDVVLGRVVDLRNSIALIEVSSKKGENRGPSNRGI 92 (179)
T ss_dssp CTTEEEE--TTEEEESSSEEEEEE--TTEEEEEES-SCCCCCCT-TCEEEEEEEEECSSEEEEEEEEETTCCSCCTTCEE
T ss_pred cCCEEEe--CCEEEEEEEEEEEEe--CCEEEEEEC-CCCcccCC-CCEEEEEEEEEeCCcEEEEEccccCcccccccCee
Confidence 3445543 223345678999983 334432 31 00113346 9999877654 68999999988 334
Q ss_pred CcCCccccHHHHHhhcccceecccCCEEEEEE
Q 020791 121 DFLDISNPKAILETTLRNYSCLTTGDSIMVAY 152 (321)
Q Consensus 121 ~FldIsnpKavLE~~LRnys~LT~GD~I~I~y 152 (321)
.++.+++...- ....-..+|..||.|....
T Consensus 93 Gll~isei~~~--~~~~~~~~~~~GD~V~akV 122 (179)
T 3m7n_A 93 GILHVSNVDEG--YVKEISEAVGYLDILKARV 122 (179)
T ss_dssp EEEEGGGTTSS--CCSSGGGTCCTTCEEEEEE
T ss_pred EEEEHHHcCcc--hhhCHhhcCCCCCEEEEEE
Confidence 45555554321 1122367899999998753
No 60
>2jra_A Protein RPA2121; domain-swapped dimer, structural genomics, PSI, protein STRU initiative, northeast structural genomics consortium; NMR {Rhodopseudomonas palustris}
Probab=20.85 E-value=1e+02 Score=23.28 Aligned_cols=22 Identities=18% Similarity=0.457 Sum_probs=18.7
Q ss_pred cccCCEEEEEECCEEEEEEEEE
Q 020791 142 LTTGDSIMVAYNNKKYYIDIIE 163 (321)
Q Consensus 142 LT~GD~I~I~yn~k~Y~l~V~e 163 (321)
|.-+..|.|.|++..|.|++..
T Consensus 38 l~g~~ev~I~H~G~~Y~LR~Tr 59 (67)
T 2jra_A 38 FTVDREIVIAHGDDRYRLRLTS 59 (67)
T ss_dssp TTSSSEEEEEETTEEEEEEECT
T ss_pred hCCCCEEEEEeCCeEEEeEEcc
Confidence 4567899999999999999753
No 61
>4dni_A Fusion protein of RNA-editing complex proteins MP MP18; krepa3, krepa6, editosome, protein/RNA binding, protein BIND binding protein; 2.55A {Trypanosoma brucei}
Probab=20.76 E-value=65 Score=29.70 Aligned_cols=56 Identities=21% Similarity=0.436 Sum_probs=41.4
Q ss_pred CcCcCCccccHHHHHhhcccceecccCCEEEEE-------E----CCEEEEEEEEEecC-CCeeEEEeCc
Q 020791 119 TKDFLDISNPKAILETTLRNYSCLTTGDSIMVA-------Y----NNKKYYIDIIETKP-SNAISIIETD 176 (321)
Q Consensus 119 s~~FldIsnpKavLE~~LRnys~LT~GD~I~I~-------y----n~k~Y~l~V~e~kP-~~aVsIIeTD 176 (321)
.++|+++.=|...|=..+.+| |.+|+.|.|. | .++.|...|+.+.| ...|.+++.|
T Consensus 190 ~Tdw~~Vv~wgk~~~AEi~~~--L~KG~~V~VeGrL~tr~~~D~~G~kr~~~~vI~V~~~~g~v~~l~~~ 257 (257)
T 4dni_A 190 EKDHHTIRCFGELFSAEVKQK--VKEGNVVCVNGRLRLSPQLEPSCNKHFYFPYIQVQPPHGQVAVIHGD 257 (257)
T ss_dssp EEEEEEEEEESHHHHHHHHHH--CCTTCEEEEEEEEEEEEEECSSSSCEEEEEEEEECTTTCEEEECCCC
T ss_pred ceEEEEEEEECCccHHHHHhh--CCCCCEEEEEEEEEeeeEEcCCCCEEEEEEEEEEECCCCEEEEecCC
Confidence 467888888877621125666 9999999995 3 25789999999986 4678887765
No 62
>1fr3_A MOP, molybdate/tungstate binding protein; molybdate homeostasis, metal binding protein; 1.50A {Sporomusa ovata} SCOP: b.40.6.1
Probab=20.42 E-value=81 Score=21.47 Aligned_cols=22 Identities=23% Similarity=0.110 Sum_probs=19.3
Q ss_pred eccHHHHHHcCCCCCCeEEEEE
Q 020791 83 YMPYWMMENLLLQEGDIVRVKN 104 (321)
Q Consensus 83 ~LP~WMm~~L~l~egd~V~v~~ 104 (321)
.++.|-.+.|+|.+|+.|.+..
T Consensus 37 ~it~~s~~~l~L~~G~~V~~~i 58 (67)
T 1fr3_A 37 AITIDSVADLDLVPGDKVTALV 58 (67)
T ss_dssp EEEHHHHHHHTCCTTCEEEEEE
T ss_pred EeCHHHHHhCCCCCCCEEEEEE
Confidence 4799999999999999998764
Done!