Query 020792
Match_columns 321
No_of_seqs 260 out of 2606
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 08:15:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020792.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020792hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 100.0 3.7E-30 1.3E-34 235.3 25.3 269 34-308 7-313 (491)
2 1pw4_A Glycerol-3-phosphate tr 99.9 6.2E-27 2.1E-31 211.4 16.3 265 35-318 24-299 (451)
3 3o7q_A L-fucose-proton symport 99.9 2.4E-26 8.2E-31 206.8 17.9 238 45-318 32-306 (438)
4 2gfp_A EMRD, multidrug resista 99.9 1.6E-24 5.4E-29 191.2 12.8 234 45-317 6-245 (375)
5 4aps_A DI-OR tripeptide H+ sym 99.9 1.3E-20 4.5E-25 172.0 20.4 140 68-207 48-194 (491)
6 2xut_A Proton/peptide symporte 99.8 3.4E-18 1.1E-22 157.3 19.1 146 63-208 37-197 (524)
7 2cfq_A Lactose permease; trans 99.7 1.1E-17 3.8E-22 149.6 0.9 149 64-212 33-190 (417)
8 1pw4_A Glycerol-3-phosphate tr 99.6 1.2E-14 4E-19 130.8 14.5 145 65-209 279-433 (451)
9 4gc0_A D-xylose-proton symport 99.5 2.6E-13 8.8E-18 123.6 15.5 152 60-212 298-466 (491)
10 2cfq_A Lactose permease; trans 99.5 1E-13 3.5E-18 123.8 10.0 142 72-213 257-404 (417)
11 3o7q_A L-fucose-proton symport 99.4 3.5E-13 1.2E-17 120.7 10.8 141 65-208 286-431 (438)
12 4aps_A DI-OR tripeptide H+ sym 99.4 1E-12 3.5E-17 119.6 11.4 145 65-209 310-471 (491)
13 2gfp_A EMRD, multidrug resista 99.2 2.2E-11 7.6E-16 106.8 5.5 127 65-194 226-361 (375)
14 2xut_A Proton/peptide symporte 98.9 2.7E-09 9.3E-14 97.8 8.3 134 75-208 336-501 (524)
15 2g9p_A Antimicrobial peptide l 74.4 1.6 5.5E-05 20.2 1.4 14 93-106 2-15 (26)
16 3hd6_A Ammonium transporter RH 35.8 1.3E+02 0.0045 26.7 7.8 23 159-181 340-362 (490)
17 4dve_A Biotin transporter BIOY 35.6 93 0.0032 23.9 6.1 25 80-104 99-123 (198)
18 3arc_T Photosystem II reaction 32.6 43 0.0015 17.1 2.5 11 204-214 18-28 (32)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.97 E-value=3.7e-30 Score=235.29 Aligned_cols=269 Identities=27% Similarity=0.453 Sum_probs=212.1
Q ss_pred hHHHHHHHHHHHHHHHHHhhcccccccchhccccccCC--------ChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchH
Q 020792 34 TSAVVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGL--------SVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRG 105 (321)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~ 105 (321)
.+..+.+.++++++.+.++++.++++..+|.+.++++. +..+.|++.+.+.+|.++|++++|+++||+|||+
T Consensus 7 ~~y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~ 86 (491)
T 4gc0_A 7 SSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRD 86 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred hHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 35566677777888999999999999888888776643 2345789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH------------------HhhhhHHHHHHHHHHhhhhhhhcchhhhhhhccCCCccchhHHhH
Q 020792 106 TMGFSDIVCIIGWVIIV------------------FSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTV 167 (321)
Q Consensus 106 ~l~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 167 (321)
+++++.+++.++.++++ +++|++.++++|+++|++.|...+..+.+++|+.|+++|++..++
T Consensus 87 ~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~ 166 (491)
T 4gc0_A 87 SLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSF 166 (491)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHh
Confidence 99999999999999988 478999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcch------------hhHHHHHHhHHHHHHHHHHhhcccCChHHHHhcCChHHHHHHHHHHhCC
Q 020792 168 HQLMICIGVSMTYLIGAFL------------NWRILALIGTIPCLVQLIGLCFIPESPRWLAKTGKGIESEAALQRLRGA 235 (321)
Q Consensus 168 ~~~~~~~g~~~~~~i~~~~------------~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 235 (321)
.+.+..+|..+++.++... .||..+.+..+..++.++..+++||+|+|+..+++.+++.+.+++...+
T Consensus 167 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~ 246 (491)
T 4gc0_A 167 NQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGN 246 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCC
Confidence 9999999988887776432 5888888888888888888888999999999999999999888876544
Q ss_pred CcchHHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHHHHHHHHHhhChhhHHHcHHHHHhhcCCCCch
Q 020792 236 DADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGVNGIAFYASSIFISAGFSGSI 308 (321)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~ 308 (321)
+...++..+..+...++ ++....... ...++..+......+++..+.+.+.+|.|.+.+..+.+...
T Consensus 247 ~~~~~~~~~~~~~~~~~---~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (491)
T 4gc0_A 247 TLATQAVQEIKHSLDHG---RKTGGRLLM---FGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDI 313 (491)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHTTHHHH---SCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHH
T ss_pred chhHHHHHHHHHHHHhh---hhhhhHHHH---hcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccc
Confidence 32222221111111111 111111111 22344556667777778888899999999999888876653
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.95 E-value=6.2e-27 Score=211.37 Aligned_cols=265 Identities=11% Similarity=0.038 Sum_probs=193.2
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccccchhccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHH
Q 020792 35 SAVVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVC 114 (321)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~ 114 (321)
+..+..+....+..+..+.......+.+|.+.+++ .+..+.+++.+++.++..++++++|+++||+|||++++++.++.
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~ 102 (451)
T 1pw4_A 24 RLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILA 102 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHH
Confidence 34455566666667777777777788899999999 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH----hhhhHHHHHHHHHHhhhhhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcch----
Q 020792 115 IIGWVIIVF----SKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL---- 186 (321)
Q Consensus 115 ~~~~~~~~~----~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~---- 186 (321)
+++.+++++ +++++.++++|++.|++.+...+...+++.|++|+++|+++.++.+.+..+|..++|.+++.+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~ 182 (451)
T 1pw4_A 103 AAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWF 182 (451)
T ss_dssp HHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHT
T ss_pred HHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999 999999999999999999999999999999999999999999999999999999999888764
Q ss_pred h-hHHHHHHhHHHHHHHHHHh-hcccCChHHHHhcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhcccccchhhh
Q 020792 187 N-WRILALIGTIPCLVQLIGL-CFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILEL 264 (321)
Q Consensus 187 ~-w~~~~~~~~~~~~~~~~~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (321)
+ ||+.|++.+++.++..+.. +++||+|+....+..++. .++.+++. ++..+++...++...++.
T Consensus 183 g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~---~~~~~~~~~~~~~~~~~~ 248 (451)
T 1pw4_A 183 NDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEY-----------KNDYPDDY---NEKAEQELTAKQIFMQYV 248 (451)
T ss_dssp CCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTT-----------CCC----------------CCTHHHHHHT
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhh-----------cccccccc---hhhhhcccccccchHHHH
Confidence 7 9999999888777655544 567887653211111000 00000000 000000111111113445
Q ss_pred hhhhhhhHHHHHHHHHHHHHhhChhhHHHcHHHHHhhc-CCCCchHHHHHHHHHH
Q 020792 265 FQRKYAHSLIVGVGLMVLQQFGGVNGIAFYASSIFISA-GFSGSIGMIAMVVIQV 318 (321)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~s~~~~~~~~~~~~i 318 (321)
++++..+...+ ..+......+.+..+.|.++++. |+++...+...++..+
T Consensus 249 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 299 (451)
T 1pw4_A 249 LPNKLLWYIAI----ANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEY 299 (451)
T ss_dssp SSCHHHHHHHH----HHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHH
T ss_pred HcCHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 55544433333 33333334667888999999884 9998866665555443
No 3
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.94 E-value=2.4e-26 Score=206.82 Aligned_cols=238 Identities=11% Similarity=0.066 Sum_probs=182.8
Q ss_pred HHHHHHHhhcccccccchhccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHH---
Q 020792 45 VCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVII--- 121 (321)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~--- 121 (321)
.+..+..++......+..|.+.+++|++..+.+++.+++.++..++.+++|+++||+|||++++++.++.+++.+++
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~ 111 (438)
T 3o7q_A 32 CSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPA 111 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhc
Confidence 33344444555566778888999999999999999999999999999999999999999999999999999999998
Q ss_pred HHhhhhHHHHHHHHHHhhhhhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcchh--------------
Q 020792 122 VFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFLN-------------- 187 (321)
Q Consensus 122 ~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~-------------- 187 (321)
+++++++.++++|++.|++.+...+...++++|++|+++|+++.++.+.+..+|..++|.+++.+.
T Consensus 112 ~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~ 191 (438)
T 3o7q_A 112 AEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDK 191 (438)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHH
T ss_pred cccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccc
Confidence 888999999999999999999999999999999999999999999999999999999999887662
Q ss_pred ----------------hHHHHHHhHHHHHHHHHHhhc--ccCChHHHHhcCChHHHHHHHHHHhCCCcchHHHHHHHHHH
Q 020792 188 ----------------WRILALIGTIPCLVQLIGLCF--IPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREY 249 (321)
Q Consensus 188 ----------------w~~~~~~~~~~~~~~~~~~~~--~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (321)
||+.|++.+++.++..+..++ .||+++. +.++ +
T Consensus 192 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~---~~~~-------------~------------- 242 (438)
T 3o7q_A 192 MSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSD---NHSD-------------A------------- 242 (438)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTT---CCCC-------------S-------------
T ss_pred CCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccccc---cccc-------------c-------------
Confidence 999998877766655554433 3554321 0000 0
Q ss_pred HHHHhcccccchhhhhhhhhhhHHHHHHHHHHHHHhhChhhHHHcHHHH-Hhhc-CCCCchHHHHHHHHHH
Q 020792 250 TETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGVNGIAFYASSI-FISA-GFSGSIGMIAMVVIQV 318 (321)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-g~s~~~~~~~~~~~~i 318 (321)
++.....+++++++++..+...+..++... ....+..|.|.| +++. |+++..++...++..+
T Consensus 243 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 306 (438)
T 3o7q_A 243 ---KQGSFSASLSRLARIRHWRWAVLAQFCYVG----AQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMV 306 (438)
T ss_dssp ---STTSHHHHHHHHTTCSHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHH
T ss_pred ---cccchhhhHHHHHhChHHHHHHHHHHHHHH----HHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHH
Confidence 000111234566676665554444333333 345677888888 8887 9998876666555443
No 4
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.91 E-value=1.6e-24 Score=191.19 Aligned_cols=234 Identities=15% Similarity=0.149 Sum_probs=183.2
Q ss_pred HHHHHHHhhcccccccchhccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHh
Q 020792 45 VCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFS 124 (321)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~ 124 (321)
++..+..........+..|.+.+++|.+..+.+++.+...++..++++++|+++||+|||+++.++.++.+++.++.+++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~ 85 (375)
T 2gfp_A 6 VLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTT 85 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHh
Confidence 34444455555556778888999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHhhhhhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcch----hhHHHHHHhHHHHH
Q 020792 125 KAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCL 200 (321)
Q Consensus 125 ~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~~~~~~~~~~ 200 (321)
++++.+++.|++.|++.+...+...+++.|++|+++|+++.+..+.+..+|..++|.+++.+ +||+.|++.+++.+
T Consensus 86 ~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 165 (375)
T 2gfp_A 86 SSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCA 165 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999888765 89999998888877
Q ss_pred HHHHH-hhcccCChHHHHhcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHHHH
Q 020792 201 VQLIG-LCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGL 279 (321)
Q Consensus 201 ~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (321)
+..+. .+++||+++.. ++ +++...++++.+|++..+...+..++
T Consensus 166 ~~~~~~~~~~~~~~~~~---~~--------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (375)
T 2gfp_A 166 GVTFSMARWMPETRPVD---AP--------------------------------RTRLLTSYKTLFGNSGFNCYLLMLIG 210 (375)
T ss_dssp HHHCCCCCSSCCCSTTT---CC--------------------------------CCCTTTCSTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCcccCCCC---cc--------------------------------cccHHHHHHHHhcCcchHHHHHHHHH
Confidence 76663 35567764310 00 01122345566666655444433333
Q ss_pred HHHHHhhChhhHHHcHHHHHhh-cCCCCchHHHHHHHHH
Q 020792 280 MVLQQFGGVNGIAFYASSIFIS-AGFSGSIGMIAMVVIQ 317 (321)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~ 317 (321)
.. .....+..+.|.++++ .|.++...+...++..
T Consensus 211 ~~----~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~ 245 (375)
T 2gfp_A 211 GL----AGIAAFEACSGVLMGAVLGLSSMTVSILFILPI 245 (375)
T ss_dssp HH----HHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHH
T ss_pred HH----HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 22 2355677777888777 4887776655554443
No 5
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.86 E-value=1.3e-20 Score=172.00 Aligned_cols=140 Identities=18% Similarity=0.239 Sum_probs=128.4
Q ss_pred ccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhh-ccchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhcc
Q 020792 68 DLGLSVAEYSLFGSILTIGAMIGAIMSGKIADY-IGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSY 146 (321)
Q Consensus 68 ~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr-~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~ 146 (321)
++|++..+.+++.+++.++..++++++|+++|| +|||+++.++.++.+++.++++++++++.++++|++.|++.+...+
T Consensus 48 ~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~ 127 (491)
T 4aps_A 48 DLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKP 127 (491)
T ss_dssp SCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccc
Confidence 399999999999999999999999999999999 8999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhccCCCcc--chhHHhHHHHHHHHHHHHHHHhhcch----hhHHHHHHhHHHHHHHHHHhh
Q 020792 147 VVPVYIAEITPKNL--RGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLIGLC 207 (321)
Q Consensus 147 ~~~~~~~~~~~~~~--r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~~~~~~~~~~~~~~~~~ 207 (321)
...++++|++|+++ |+.+.+.++.+..+|..++|.+++.+ +||+.|++.++..++..+..+
T Consensus 128 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~ 194 (491)
T 4aps_A 128 NVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYY 194 (491)
T ss_dssp HHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988 67788889999999999999888775 899999998777666655543
No 6
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.79 E-value=3.4e-18 Score=157.31 Aligned_cols=146 Identities=16% Similarity=0.159 Sum_probs=131.4
Q ss_pred hccccccC------CChhhHHHHHHHHHHHHHHHHHhHHHhhhhc-cchHHHHHHHHHHHHHHHHHHHhh-hhHHHHHHH
Q 020792 63 SGITNDLG------LSVAEYSLFGSILTIGAMIGAIMSGKIADYI-GRRGTMGFSDIVCIIGWVIIVFSK-AAWWLDLGR 134 (321)
Q Consensus 63 ~~~~~~~~------~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~-Grr~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 134 (321)
+++.+++| ++..+.+++.+++.++..++.+++|+++||+ |||+++.++.++.+++.+++++++ +++.+++.|
T Consensus 37 ~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (524)
T 2xut_A 37 PFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGL 116 (524)
T ss_dssp HHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHH
T ss_pred HHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 34777888 9999999999999999999999999999999 999999999999999999999998 999999999
Q ss_pred HHHhhhhhhhcchhhhhhhccCCCccchhHHhH---HHHHHHHHHHHHHHhhcch----hhHHHHHHhHHHHHHHHHHhh
Q 020792 135 LLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTV---HQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLIGLC 207 (321)
Q Consensus 135 ~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~---~~~~~~~g~~~~~~i~~~~----~w~~~~~~~~~~~~~~~~~~~ 207 (321)
++.|++.+...+...+++.|++|+++|+++.+. .+.+..+|..++|.+++.+ +|++.|++.+++.++..+..+
T Consensus 117 ~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~ 196 (524)
T 2xut_A 117 FLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFW 196 (524)
T ss_dssp HHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999876666 8888999999999888765 899999988877766655544
Q ss_pred c
Q 020792 208 F 208 (321)
Q Consensus 208 ~ 208 (321)
+
T Consensus 197 ~ 197 (524)
T 2xut_A 197 L 197 (524)
T ss_dssp S
T ss_pred H
Confidence 3
No 7
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.65 E-value=1.1e-17 Score=149.63 Aligned_cols=149 Identities=13% Similarity=0.153 Sum_probs=102.6
Q ss_pred ccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHH---HHHHhhhh-HHHHHHHHHHhh
Q 020792 64 GITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWV---IIVFSKAA-WWLDLGRLLVGY 139 (321)
Q Consensus 64 ~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~l~G~ 139 (321)
++++++|++..+.|++.+...++..++++++|+++||+|||++++++.++.+++.. ...+.+.. ..+...+.+.|+
T Consensus 33 ~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (417)
T 2cfq_A 33 WLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGI 112 (417)
T ss_dssp HHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGS
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36777999999999999999999999999999999999999999988877654321 11222211 123445666666
Q ss_pred hhhhhcchhhhhhhccCCC--ccchhHHhHHHHHHHHHHHHHHHhhcch---hhHHHHHHhHHHHHHHHHHhhcccCC
Q 020792 140 GMGLLSYVVPVYIAEITPK--NLRGGFTTVHQLMICIGVSMTYLIGAFL---NWRILALIGTIPCLVQLIGLCFIPES 212 (321)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~--~~r~~~~~~~~~~~~~g~~~~~~i~~~~---~w~~~~~~~~~~~~~~~~~~~~~~e~ 212 (321)
+.+..++.....+.++.++ ++|+...+....+..+|..++|.+++++ +|++.|++.++..++..+..++.+|+
T Consensus 113 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 190 (417)
T 2cfq_A 113 YLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLFFAKTD 190 (417)
T ss_dssp STTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHHHCSHHHHTTTTTTTTTHHHHSCSSCCC
T ss_pred HHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHcCcc
Confidence 6655555555555555443 3446666777666777777888777665 79999988776655555444444443
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.60 E-value=1.2e-14 Score=130.84 Aligned_cols=145 Identities=14% Similarity=0.186 Sum_probs=123.6
Q ss_pred cccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhc--cchHHHHHHHHHHH-HHHHHHHHh--hhhHHHHHHHHHHhh
Q 020792 65 ITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYI--GRRGTMGFSDIVCI-IGWVIIVFS--KAAWWLDLGRLLVGY 139 (321)
Q Consensus 65 ~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~--Grr~~l~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~l~G~ 139 (321)
+++.+|.+..+.+++.++..++..++.++.|++.||+ |||+.+.++.++.. ++.++..+. .+.+.+.+..++.|+
T Consensus 279 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 358 (451)
T 1pw4_A 279 LKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGF 358 (451)
T ss_dssp BTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHH
Confidence 4555899999999999999999999999999999999 99999888877766 666665555 367777788888999
Q ss_pred hhhhhcchhhhhhhccCCCccchhHHhHHHHHHHH-HHHHHHHhhcch----hhHHHHHHhHHHHHHHHHHhhcc
Q 020792 140 GMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICI-GVSMTYLIGAFL----NWRILALIGTIPCLVQLIGLCFI 209 (321)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~i~~~~----~w~~~~~~~~~~~~~~~~~~~~~ 209 (321)
+.+...+....++.|.+|+++|+++.++.+....+ |..++|.+.+.+ +|+..|++.+++.++..+..+++
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 359 LIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888899999999999999999999999999 999999888765 78999998888877776665544
No 9
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.51 E-value=2.6e-13 Score=123.56 Aligned_cols=152 Identities=14% Similarity=0.078 Sum_probs=110.5
Q ss_pred cchhccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHH-
Q 020792 60 PAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSK----AAWWLDLGR- 134 (321)
Q Consensus 60 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~~- 134 (321)
.+.+.+.+..+.+............+...++.++.+++.||+|||+.++.+....+++.+..+... +.+..++..
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 377 (491)
T 4gc0_A 298 YYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSML 377 (491)
T ss_dssp HHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred hcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHH
Confidence 345567777888888888888888899999999999999999999999999888888776655421 112222222
Q ss_pred -HHHhhhhhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcch----------hhHHHHHHhHHHHHHHH
Q 020792 135 -LLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----------NWRILALIGTIPCLVQL 203 (321)
Q Consensus 135 -~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----------~w~~~~~~~~~~~~~~~ 203 (321)
+..+++ ....+..+.+.+|.+|++.|+++.++......+|..+++.+...+ ++.+.|++.++++++..
T Consensus 378 ~~~~~~~-~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~ 456 (491)
T 4gc0_A 378 FYVAAFA-MSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAA 456 (491)
T ss_dssp HHHHHHH-TTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHH-hHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 222222 233466778999999999999999999988888887776554332 34456777777777766
Q ss_pred HHh-hcccCC
Q 020792 204 IGL-CFIPES 212 (321)
Q Consensus 204 ~~~-~~~~e~ 212 (321)
+.. +++||+
T Consensus 457 i~~~~~~PET 466 (491)
T 4gc0_A 457 LFMWKFVPET 466 (491)
T ss_dssp HHHHHHCCCC
T ss_pred HHHHheecCC
Confidence 654 678999
No 10
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.48 E-value=1e-13 Score=123.85 Aligned_cols=142 Identities=8% Similarity=0.037 Sum_probs=114.6
Q ss_pred ChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhcchhhhh
Q 020792 72 SVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVY 151 (321)
Q Consensus 72 s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~ 151 (321)
+....++..++..++..++.++.|+++||+|||+++..+.++.+++.++.++.++.+.+++..++.+++.+...+....+
T Consensus 257 ~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 336 (417)
T 2cfq_A 257 GTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKY 336 (417)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556788888888999999999999999999999998888888877777777777777777777787776666777889
Q ss_pred hhccCCCccchhHHhH-HHHHHHHHHHHHHHhhcch----hhHHHHHHhHHHHHHHHHHhh-cccCCh
Q 020792 152 IAEITPKNLRGGFTTV-HQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLIGLC-FIPESP 213 (321)
Q Consensus 152 ~~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~i~~~~----~w~~~~~~~~~~~~~~~~~~~-~~~e~~ 213 (321)
+.|.+|++.|+++.+. ++....+|..++|.+++.+ +++..|.+.+++.++..+..+ +.||++
T Consensus 337 ~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 337 ITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp HHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred HHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 9999999999998888 4777888888888888765 677888888877777666543 456553
No 11
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.44 E-value=3.5e-13 Score=120.74 Aligned_cols=141 Identities=12% Similarity=0.023 Sum_probs=114.1
Q ss_pred cccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhh
Q 020792 65 ITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLL 144 (321)
Q Consensus 65 ~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~ 144 (321)
+++.+|.+..+.++..+...++..++.++.|+++||+|||+++.++.++.+++.++..+.++.+.+.. -++.|++.+..
T Consensus 286 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~ 364 (438)
T 3o7q_A 286 VEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIA-LTLCSAFMSIQ 364 (438)
T ss_dssp HHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH-HHHHHHHHTTH
T ss_pred hhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHHH-HHHHHHHHHHH
Confidence 45566999999999999999999999999999999999999999999999998888888877765444 48888998989
Q ss_pred cchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcch----h-hHHHHHHhHHHHHHHHHHhhc
Q 020792 145 SYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----N-WRILALIGTIPCLVQLIGLCF 208 (321)
Q Consensus 145 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~-w~~~~~~~~~~~~~~~~~~~~ 208 (321)
++...++..|.+|++ |+.+.++.. ...+|..++|.+.+.+ + ++..|++.+++.++..+..++
T Consensus 365 ~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 431 (438)
T 3o7q_A 365 YPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIFARF 431 (438)
T ss_dssp HHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999976 777777766 4458888888877765 5 777777765555444443333
No 12
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.41 E-value=1e-12 Score=119.64 Aligned_cols=145 Identities=14% Similarity=0.107 Sum_probs=116.0
Q ss_pred cccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHH-----HHHHHHHHHHHHHHHhh---------hhHHH
Q 020792 65 ITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMG-----FSDIVCIIGWVIIVFSK---------AAWWL 130 (321)
Q Consensus 65 ~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~-----~~~~~~~~~~~~~~~~~---------~~~~~ 130 (321)
..+.++.+..+.++..+...++..++.++.|++.||+|||+... .+.++.+++.++..+.. +.+.+
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (491)
T 4aps_A 310 AAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWL 389 (491)
T ss_dssp HHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHH
T ss_pred HHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHH
Confidence 45556766677788888899999999999999999999987655 67777777766655533 66777
Q ss_pred HHHHHHHhhhhhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcch---hhHHHHHHhHHHHHHHHHHhh
Q 020792 131 DLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL---NWRILALIGTIPCLVQLIGLC 207 (321)
Q Consensus 131 ~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~---~w~~~~~~~~~~~~~~~~~~~ 207 (321)
.+..++.|++.+...+....++.|.+|+++|+++.++.+....+|..+++.+.+.+ ++...|.+.+++.++..+..+
T Consensus 390 ~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (491)
T 4aps_A 390 VGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAKSEVAYFSYFGLGSVVLGIVLV 469 (491)
T ss_dssp HHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGSSTTHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 78888999999998999999999999999999999999999999999999998877 566777777777666665554
Q ss_pred cc
Q 020792 208 FI 209 (321)
Q Consensus 208 ~~ 209 (321)
++
T Consensus 470 ~~ 471 (491)
T 4aps_A 470 FL 471 (491)
T ss_dssp HC
T ss_pred HH
Confidence 33
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.16 E-value=2.2e-11 Score=106.83 Aligned_cols=127 Identities=22% Similarity=0.191 Sum_probs=98.4
Q ss_pred cccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHH-HHHHHH--HHHH--hhhhHHHHHHHHHHhh
Q 020792 65 ITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIV-CIIGWV--IIVF--SKAAWWLDLGRLLVGY 139 (321)
Q Consensus 65 ~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~-~~~~~~--~~~~--~~~~~~~~~~~~l~G~ 139 (321)
+++.+|.+..+.+++.+...++..++.++.+++.||+|++. ..+... ...+.. .... .++.+.+.+..++.|+
T Consensus 226 ~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ 303 (375)
T 2gfp_A 226 MGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLM--WQSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFF 303 (375)
T ss_dssp SHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHH--HHHHHHHHHTSSSSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHH
Confidence 44458999999999999999999999999999999999833 233222 222222 2222 2466777788889999
Q ss_pred hhhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcch----hhHHHHHH
Q 020792 140 GMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALI 194 (321)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~~~~ 194 (321)
+.+...+....++.|.+| ++|+++.++.+....+|..++|.+.+.+ +|+..+++
T Consensus 304 ~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~ 361 (375)
T 2gfp_A 304 GAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLM 361 (375)
T ss_dssp HHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHH
Confidence 999999999999999998 7899999999999999999888888776 45444444
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.90 E-value=2.7e-09 Score=97.77 Aligned_cols=134 Identities=14% Similarity=0.208 Sum_probs=96.4
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHhh----hhccc----hHHHHHHHHHHHHHHHHHHHh---------hhhHHHHHHHHHH
Q 020792 75 EYSLFGSILTIGAMIGAIMSGKIA----DYIGR----RGTMGFSDIVCIIGWVIIVFS---------KAAWWLDLGRLLV 137 (321)
Q Consensus 75 ~~~~~~~~~~~~~~i~~~~~g~l~----dr~Gr----r~~l~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~l~ 137 (321)
..+.+.....++..++.++.+++. ||.|+ ++.+.++.++.+++.++.++. .+.+.+++..++.
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 415 (524)
T 2xut_A 336 EPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALL 415 (524)
T ss_dssp CHHHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHH
Confidence 456666666677777777777664 55543 356677777777777766653 3566777888999
Q ss_pred hhhhhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcch------hh---------HHHHHHhHHHHHHH
Q 020792 138 GYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL------NW---------RILALIGTIPCLVQ 202 (321)
Q Consensus 138 G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~------~w---------~~~~~~~~~~~~~~ 202 (321)
|++.+...+....++.|..|+++|++++++.+....+|..++|.+.+.+ +| +..|++.+++.++.
T Consensus 416 g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (524)
T 2xut_A 416 TFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILA 495 (524)
T ss_dssp HHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999888765 24 33366666666665
Q ss_pred HHHhhc
Q 020792 203 LIGLCF 208 (321)
Q Consensus 203 ~~~~~~ 208 (321)
.+..++
T Consensus 496 ~~~~~~ 501 (524)
T 2xut_A 496 AIVFAL 501 (524)
T ss_dssp HHHHC-
T ss_pred HHHHHH
Confidence 555443
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=74.42 E-value=1.6 Score=20.25 Aligned_cols=14 Identities=29% Similarity=0.598 Sum_probs=11.6
Q ss_pred hHHHhhhhccchHH
Q 020792 93 MSGKIADYIGRRGT 106 (321)
Q Consensus 93 ~~g~l~dr~Grr~~ 106 (321)
++|.+..+||||.+
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 46889999999974
No 16
>3hd6_A Ammonium transporter RH type C; ammonia, channel, rhesus, glycoprotein, membran structural genomics, PSI-2, protein structure initiative; HET: BOG; 2.10A {Homo sapiens}
Probab=35.84 E-value=1.3e+02 Score=26.72 Aligned_cols=23 Identities=17% Similarity=0.151 Sum_probs=12.6
Q ss_pred ccchhHHhHHHHHHHHHHHHHHH
Q 020792 159 NLRGGFTTVHQLMICIGVSMTYL 181 (321)
Q Consensus 159 ~~r~~~~~~~~~~~~~g~~~~~~ 181 (321)
+.---+.+....+..+|.+...+
T Consensus 340 DD~lgv~~vHGv~Gi~G~l~~gl 362 (490)
T 3hd6_A 340 QDTCGINNLHGIPGIIGGIVGAV 362 (490)
T ss_dssp CCTTCHHHHTHHHHHHHHHHHHH
T ss_pred CccccchHHhhHHHHHHHHHHHH
Confidence 33344566666666666655443
No 17
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=35.63 E-value=93 Score=23.87 Aligned_cols=25 Identities=8% Similarity=0.037 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHhHHHhhhhccch
Q 020792 80 GSILTIGAMIGAIMSGKIADYIGRR 104 (321)
Q Consensus 80 ~~~~~~~~~i~~~~~g~l~dr~Grr 104 (321)
+.-+.+|+.++..+.|++.||..++
T Consensus 99 TgGYLiGF~~aA~v~G~l~~~~~~~ 123 (198)
T 4dve_A 99 SGGYRIAWLFTPFLIGFFLKKLKIT 123 (198)
T ss_dssp THHHHHHHHHHHHHHHHHHHHTTGG
T ss_pred hhHHHHHHHHHHHHHHHHHHHcccc
Confidence 3456677777888888888887543
No 18
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=32.61 E-value=43 Score=17.12 Aligned_cols=11 Identities=36% Similarity=0.513 Sum_probs=6.7
Q ss_pred HHhhcccCChH
Q 020792 204 IGLCFIPESPR 214 (321)
Q Consensus 204 ~~~~~~~e~~~ 214 (321)
....+++|+|+
T Consensus 18 FFAI~FRePPr 28 (32)
T 3arc_T 18 FFAIFFREPPR 28 (32)
T ss_dssp HHHHHTSCCCC
T ss_pred HHhhhhcCCCC
Confidence 33456788774
Done!