BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020794
(321 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3O1L|A Chain A, Crystal Structure Of A Formyltetrahydrofolate Deformylase
(Pspto_4314) From Pseudomonas Syringae Pv. Tomato Str.
Dc3000 At 2.20 A Resolution
pdb|3O1L|B Chain B, Crystal Structure Of A Formyltetrahydrofolate Deformylase
(Pspto_4314) From Pseudomonas Syringae Pv. Tomato Str.
Dc3000 At 2.20 A Resolution
Length = 302
Score = 144 bits (362), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 96/266 (36%), Positives = 123/266 (46%), Gaps = 43/266 (16%)
Query: 46 VFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDED 105
V CPD VGIVAK+S +AS G I A F+ R E D + + + E
Sbjct: 26 VIACPDRVGIVAKVSNFLASHNGWITEASHHSDNLSGWFFXRHEIRADTLPFDLDGFREA 85
Query: 106 FFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNH 165
F +++ F+ R+ D K +V + AS++ HCL D L+ W +L +I CVISNH
Sbjct: 86 FTPIAEEFSXD---WRITDSAQKKRVVLXASRESHCLADLLHRWHSDELDCDIACVISNH 142
Query: 166 DRGPNSHVIRFLERHGIPYHYLCAKXXXXXXXXXXXVQ-----NTDFLVLARYMQPVPLQ 220
+ +E H IPY+++ + D +VLARY Q +P Q
Sbjct: 143 -----QDLRSXVEWHDIPYYHVPVDPKDKEPAFAEVSRLVGHHQADVVVLARYXQILPPQ 197
Query: 221 KEAXXXXXXXXXXXXXXXXXXXFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAF 280
R Y VINIHH LPSF G KP QA
Sbjct: 198 ------------------------------LCREYAHQVINIHHSFLPSFVGAKPYHQAS 227
Query: 281 DAGVKLIGATSHFVTEELDAGPIIEQ 306
GVKLIGAT H+VTEELDAGPIIEQ
Sbjct: 228 LRGVKLIGATCHYVTEELDAGPIIEQ 253
>pdb|3OBI|A Chain A, Crystal Structure Of A Formyltetrahydrofolate Deformylase
(Np_949368) From Rhodopseudomonas Palustris Cga009 At
1.95 A Resolution
pdb|3OBI|B Chain B, Crystal Structure Of A Formyltetrahydrofolate Deformylase
(Np_949368) From Rhodopseudomonas Palustris Cga009 At
1.95 A Resolution
pdb|3OBI|C Chain C, Crystal Structure Of A Formyltetrahydrofolate Deformylase
(Np_949368) From Rhodopseudomonas Palustris Cga009 At
1.95 A Resolution
pdb|3OBI|D Chain D, Crystal Structure Of A Formyltetrahydrofolate Deformylase
(Np_949368) From Rhodopseudomonas Palustris Cga009 At
1.95 A Resolution
Length = 288
Score = 123 bits (308), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 89/269 (33%), Positives = 120/269 (44%), Gaps = 42/269 (15%)
Query: 49 CPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK 108
CPD GIV+ +S + G NIL A + + F+ R F P + F
Sbjct: 13 CPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFXRVVFNAAAKVIPLASLRTGFGV 72
Query: 109 LSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRG 168
++ F D + + KV +L S+ +HCL D LY W+ G L T ++SNH R
Sbjct: 73 IAAKFTXG---WHXRDRETRRKVXLLVSQSDHCLADILYRWRVGDLHXIPTAIVSNHPRE 129
Query: 169 PNSHVIRFLERHGIP-YHYLCAKXXXXXXXXXXXV----QNTDFLVLARYMQPVPLQKEA 223
S + IP YH+ K +TD +VLARY Q + + A
Sbjct: 130 TFSG----FDFGDIPFYHFPVNKDTRRQQEAAITALIAQTHTDLVVLARYXQILSDEXSA 185
Query: 224 XXXXXXXXXXXXXXXXXXXFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAG 283
L+G+ INIHH LP FKG KP QAFD G
Sbjct: 186 R----------------------LAGR--------CINIHHSFLPGFKGAKPYHQAFDRG 215
Query: 284 VKLIGATSHFVTEELDAGPIIEQMLELLA 312
VKLIGAT+H+VT LD GPII+Q +E ++
Sbjct: 216 VKLIGATAHYVTSALDEGPIIDQDVERIS 244
>pdb|3NRB|A Chain A, Crystal Structure Of A Formyltetrahydrofolate Deformylase
(Puru, Pp_1943) From Pseudomonas Putida Kt2440 At 2.05 A
Resolution
pdb|3NRB|B Chain B, Crystal Structure Of A Formyltetrahydrofolate Deformylase
(Puru, Pp_1943) From Pseudomonas Putida Kt2440 At 2.05 A
Resolution
pdb|3NRB|C Chain C, Crystal Structure Of A Formyltetrahydrofolate Deformylase
(Puru, Pp_1943) From Pseudomonas Putida Kt2440 At 2.05 A
Resolution
pdb|3NRB|D Chain D, Crystal Structure Of A Formyltetrahydrofolate Deformylase
(Puru, Pp_1943) From Pseudomonas Putida Kt2440 At 2.05 A
Resolution
Length = 287
Score = 115 bits (289), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 92/266 (34%), Positives = 123/266 (46%), Gaps = 44/266 (16%)
Query: 49 CPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK 108
C D GIV+++S + + G NI+ A+ F E + F+ R P+ + + F K
Sbjct: 14 CQDAPGIVSEVSTFLFNNGANIVEAEQFNDEDSSKFFXRVSVEI-PVAGVND-FNSAFGK 71
Query: 109 LSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRG 168
+ + +NA P D K KV + SK +HCL D LY + G+L E+ +ISNH R
Sbjct: 72 VVEKYNAEWWFR--PRTDRK-KVVIXVSKFDHCLGDLLYRHRLGELDXEVVGIISNHPRE 128
Query: 169 PNSHVIRFLERHGIPYHYL----CAKXXXXXXXXXXXVQN-TDFLVLARYMQPVPLQKEA 223
S + IP+HYL K Q+ D +VLARY Q +
Sbjct: 129 ALSVSLV----GDIPFHYLPVTPATKAAQESQIKNIVTQSQADLIVLARYXQILS----- 179
Query: 224 XXXXXXXXXXXXXXXXXXXFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAG 283
+ LSG+ INIHH LP FKG KP QA G
Sbjct: 180 -----------------DDLSAFLSGR--------CINIHHSFLPGFKGAKPYHQAHTRG 214
Query: 284 VKLIGATSHFVTEELDAGPIIEQMLE 309
VKLIGAT+HFVT +LD GPII Q +E
Sbjct: 215 VKLIGATAHFVTADLDEGPIIAQDVE 240
>pdb|3LOU|A Chain A, Crystal Structure Of Formyltetrahydrofolate Deformylase
(yp_105254.1) From Burkholderia Mallei Atcc 23344 At
1.90 A Resolution
pdb|3LOU|B Chain B, Crystal Structure Of Formyltetrahydrofolate Deformylase
(yp_105254.1) From Burkholderia Mallei Atcc 23344 At
1.90 A Resolution
pdb|3LOU|C Chain C, Crystal Structure Of Formyltetrahydrofolate Deformylase
(yp_105254.1) From Burkholderia Mallei Atcc 23344 At
1.90 A Resolution
pdb|3LOU|D Chain D, Crystal Structure Of Formyltetrahydrofolate Deformylase
(yp_105254.1) From Burkholderia Mallei Atcc 23344 At
1.90 A Resolution
Length = 292
Score = 112 bits (279), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 85/281 (30%), Positives = 124/281 (44%), Gaps = 47/281 (16%)
Query: 49 CPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEF--IFDPIKWPREQMDEDF 106
CP G VA + + + VF + F+ R F D + + +F
Sbjct: 17 CPSAAGQVAAVVGLLDRHRCYVDELTVFDDDLSARFFVRCVFHATDDADALRVDALRREF 76
Query: 107 FKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNH- 165
+++ F R + D+ + KV + SK EHCL D L+ W+ G+L +I ++SNH
Sbjct: 77 EPIAERF---RXQWAIHDVAARPKVLIXVSKLEHCLADLLFRWKXGELKXDIVGIVSNHP 133
Query: 166 DRGPNSHVIRFLERHGIPYHY--LCAKXXXXXXXXXXXVQNT---DFLVLARYMQPVPLQ 220
D P +HG+P+ + + A V T + ++LARY Q
Sbjct: 134 DFAP------LAAQHGLPFRHFPITADTKAQQEAQWLDVFETSGAELVILARYXQ----- 182
Query: 221 KEAXXXXXXXXXXXXXXXXXXXFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAF 280
+LS + INIHH LP FKG KP QA
Sbjct: 183 -------------------------VLSPEASARLANRAINIHHSFLPGFKGAKPYHQAH 217
Query: 281 DAGVKLIGATSHFVTEELDAGPIIEQMLELLAISFATELML 321
GVKLIGAT+HFVT++LD GPIIEQ++E + S+ E +L
Sbjct: 218 ARGVKLIGATAHFVTDDLDEGPIIEQVVERVDHSYRPEQLL 258
>pdb|3N0V|A Chain A, Crystal Structure Of A Formyltetrahydrofolate Deformylase
(Pp_0327) From Pseudomonas Putida Kt2440 At 2.25 A
Resolution
pdb|3N0V|B Chain B, Crystal Structure Of A Formyltetrahydrofolate Deformylase
(Pp_0327) From Pseudomonas Putida Kt2440 At 2.25 A
Resolution
pdb|3N0V|C Chain C, Crystal Structure Of A Formyltetrahydrofolate Deformylase
(Pp_0327) From Pseudomonas Putida Kt2440 At 2.25 A
Resolution
pdb|3N0V|D Chain D, Crystal Structure Of A Formyltetrahydrofolate Deformylase
(Pp_0327) From Pseudomonas Putida Kt2440 At 2.25 A
Resolution
Length = 286
Score = 103 bits (257), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 79/281 (28%), Positives = 123/281 (43%), Gaps = 50/281 (17%)
Query: 49 CPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK 108
CP +G V ++ + + + F + F+ R EF + P + DE F+
Sbjct: 15 CPSXLGTVDVVTRYLFEQRCYVTEHHSFDDRQSGRFFIRVEF-----RQP-DDFDEAGFR 68
Query: 109 --LSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNH- 165
L++ A + + + KV + SK +HCL D LY + G+L ++ V+SNH
Sbjct: 69 AGLAERSEAFGXAFELTAPNHRPKVVIXVSKADHCLNDLLYRQRIGQLGXDVVAVVSNHP 128
Query: 166 DRGPNSHVIRFLERHGIPYHYLCAKXXXXXXXXXXXVQ-----NTDFLVLARYMQPVPLQ 220
D P +H H IPY++ +Q + ++LARY Q
Sbjct: 129 DLEPLAHW------HKIPYYHFALDPKDKPGQERKVLQVIEETGAELVILARYXQ----- 177
Query: 221 KEAXXXXXXXXXXXXXXXXXXXFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAF 280
+LS + R INIHH LLP FKG KP QA+
Sbjct: 178 -------------------------VLSPELCRRLDGWAINIHHSLLPGFKGAKPYHQAY 212
Query: 281 DAGVKLIGATSHFVTEELDAGPIIEQMLELLAISFATELML 321
+ GVK +GAT+H++ +LD GPII Q +E++ S E ++
Sbjct: 213 NKGVKXVGATAHYINNDLDEGPIIAQGVEVVDHSHYPEDLI 253
>pdb|3KCQ|A Chain A, Crystal Structure Of Phosphoribosylglycinamide
Formyltransferase From Anaplasma Phagocytophilum
pdb|3KCQ|B Chain B, Crystal Structure Of Phosphoribosylglycinamide
Formyltransferase From Anaplasma Phagocytophilum
pdb|3KCQ|C Chain C, Crystal Structure Of Phosphoribosylglycinamide
Formyltransferase From Anaplasma Phagocytophilum
pdb|3KCQ|D Chain D, Crystal Structure Of Phosphoribosylglycinamide
Formyltransferase From Anaplasma Phagocytophilum
Length = 215
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/64 (54%), Positives = 43/64 (67%)
Query: 243 FNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGP 302
F IL KF+ + +INIH LLPSFKG +QA+ AGVK+ G T H+V +ELDAGP
Sbjct: 91 FMSILPEKFVTDWHHKIINIHPSLLPSFKGLNAQEQAYKAGVKIAGCTLHYVYQELDAGP 150
Query: 303 IIEQ 306
II Q
Sbjct: 151 IIMQ 154
>pdb|1ZLY|A Chain A, The Structure Of Human Glycinamide Ribonucleotide
Transformylase In Complex With Alpha,beta-n-
(hydroxyacetyl)-d-ribofuranosylamine And 10-formyl-5,8,
Dideazafolate
Length = 203
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 42/64 (65%)
Query: 243 FNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGP 302
F ILSG F++ + ++NIH LLPSFKG +QA + GV + G T HFV E++DAG
Sbjct: 88 FMRILSGPFVQKWNGKMLNIHPSLLPSFKGSNAHEQALETGVTVTGCTVHFVAEDVDAGQ 147
Query: 303 IIEQ 306
II Q
Sbjct: 148 IILQ 151
>pdb|1MEO|A Chain A, Human Glycinamide Ribonucleotide Transformylase At Ph 4.2
pdb|1NJS|A Chain A, Human Gar Tfase In Complex With Hydrolyzed Form Of 10-
Trifluoroacetyl-5,10-Dideaza-Acyclic-5,6,7,8-
Tetrahydrofolic Acid
pdb|1NJS|B Chain B, Human Gar Tfase In Complex With Hydrolyzed Form Of 10-
Trifluoroacetyl-5,10-Dideaza-Acyclic-5,6,7,8-
Tetrahydrofolic Acid
pdb|1RBM|A Chain A, Human Gar Tfase Complex Structure With Polyglutamated 10-
(Trifluoroacetyl)-5,10-Dideazaacyclic-5,6,7,8-
Tetrahydrofolic Acid
pdb|1RBM|B Chain B, Human Gar Tfase Complex Structure With Polyglutamated 10-
(Trifluoroacetyl)-5,10-Dideazaacyclic-5,6,7,8-
Tetrahydrofolic Acid
pdb|1RBQ|A Chain A, Human Gar Tfase Complex Structure With
10-(Trifluoroacetyl)-
5,10-Dideazaacyclic-5,6,7,8-Tetrahydrofolic Acid
pdb|1RBQ|B Chain B, Human Gar Tfase Complex Structure With
10-(Trifluoroacetyl)-
5,10-Dideazaacyclic-5,6,7,8-Tetrahydrofolic Acid
pdb|1RBQ|C Chain C, Human Gar Tfase Complex Structure With
10-(Trifluoroacetyl)-
5,10-Dideazaacyclic-5,6,7,8-Tetrahydrofolic Acid
pdb|1RBQ|D Chain D, Human Gar Tfase Complex Structure With
10-(Trifluoroacetyl)-
5,10-Dideazaacyclic-5,6,7,8-Tetrahydrofolic Acid
pdb|1RBY|A Chain A, Human Gar Tfase Complex Structure With
10-(trifluoroacetyl)-
5,10-dideazaacyclic-5,6,7,8-tetrahydrofolic Acid And
Substrate Beta-gar
pdb|1RBY|B Chain B, Human Gar Tfase Complex Structure With
10-(trifluoroacetyl)-
5,10-dideazaacyclic-5,6,7,8-tetrahydrofolic Acid And
Substrate Beta-gar
pdb|1RBY|C Chain C, Human Gar Tfase Complex Structure With
10-(trifluoroacetyl)-
5,10-dideazaacyclic-5,6,7,8-tetrahydrofolic Acid And
Substrate Beta-gar
pdb|1RBY|D Chain D, Human Gar Tfase Complex Structure With
10-(trifluoroacetyl)-
5,10-dideazaacyclic-5,6,7,8-tetrahydrofolic Acid And
Substrate Beta-gar
pdb|1RBZ|A Chain A, Human Gar Tfase Complex Structure With Polyglutamated 10-
(Trifluoroacetyl)-5,10-Dideazaacyclic-5,6,7,8-
Tetrahydrofolic Acid
pdb|1RBZ|B Chain B, Human Gar Tfase Complex Structure With Polyglutamated 10-
(Trifluoroacetyl)-5,10-Dideazaacyclic-5,6,7,8-
Tetrahydrofolic Acid
pdb|1RC0|A Chain A, Human Gar Tfase Complex Structure With Polyglutamated 10-
(trifluoroacetyl)-5,10-dideazaacyclic-5,6,7,8-
Tetrahydrofolic Acid
pdb|1RC0|B Chain B, Human Gar Tfase Complex Structure With Polyglutamated 10-
(trifluoroacetyl)-5,10-dideazaacyclic-5,6,7,8-
Tetrahydrofolic Acid
pdb|1RC1|A Chain A, Human Gar Tfase Complex Structure With Polyglutamated 10-
(Trifluoroacetyl)-5,10-Dideazaacyclic-5,6,7,8-
Tetrahydrofolic Acid
pdb|1RC1|B Chain B, Human Gar Tfase Complex Structure With Polyglutamated 10-
(Trifluoroacetyl)-5,10-Dideazaacyclic-5,6,7,8-
Tetrahydrofolic Acid
Length = 209
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 42/64 (65%)
Query: 243 FNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGP 302
F ILSG F++ + ++NIH LLPSFKG +QA + GV + G T HFV E++DAG
Sbjct: 88 FMRILSGPFVQKWNGKMLNIHPSLLPSFKGSNAHEQALETGVTVTGCTVHFVAEDVDAGQ 147
Query: 303 IIEQ 306
II Q
Sbjct: 148 IILQ 151
>pdb|1ZLX|A Chain A, The Apo Structure Of Human Glycinamide Ribonucleotide
Transformylase
Length = 203
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 41/64 (64%)
Query: 243 FNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGP 302
F ILSG F++ + +NIH LLPSFKG +QA + GV + G T HFV E++DAG
Sbjct: 88 FXRILSGPFVQKWNGKXLNIHPSLLPSFKGSNAHEQALETGVTVTGCTVHFVAEDVDAGQ 147
Query: 303 IIEQ 306
II Q
Sbjct: 148 IILQ 151
>pdb|1MEJ|B Chain B, Human Glycinamide Ribonucleotide Transformylase Domain At
Ph 8.5
pdb|1MEJ|A Chain A, Human Glycinamide Ribonucleotide Transformylase Domain At
Ph 8.5
pdb|1MEJ|C Chain C, Human Glycinamide Ribonucleotide Transformylase Domain At
Ph 8.5
pdb|1MEN|A Chain A, Complex Structure Of Human Gar Tfase And Substrate
Beta-Gar
pdb|1MEN|B Chain B, Complex Structure Of Human Gar Tfase And Substrate
Beta-Gar
pdb|1MEN|C Chain C, Complex Structure Of Human Gar Tfase And Substrate
Beta-Gar
Length = 223
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 42/64 (65%)
Query: 243 FNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGP 302
F ILSG F++ + ++NIH LLPSFKG +QA + GV + G T HFV E++DAG
Sbjct: 99 FMRILSGPFVQKWNGKMLNIHPSLLPSFKGSNAHEQALETGVTVTGCTVHFVAEDVDAGQ 158
Query: 303 IIEQ 306
II Q
Sbjct: 159 IILQ 162
>pdb|3P9X|A Chain A, Crystal Structure Of Phosphoribosylglycinamide
Formyltransferase From Bacillus Halodurans
pdb|3P9X|B Chain B, Crystal Structure Of Phosphoribosylglycinamide
Formyltransferase From Bacillus Halodurans
Length = 211
Score = 64.3 bits (155), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 76/183 (41%), Gaps = 39/183 (21%)
Query: 130 KVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCA 189
+VA+ AS + + G+LP E+ +I++ P + V+ ++ H IP L
Sbjct: 4 RVAIFASGSGTNAEAIIQSQKAGQLPCEVALLITDK---PGAKVVERVKVHEIPVCALDP 60
Query: 190 KXXXXXXXXXXXV------QNTDFLVLARYMQPVPLQKEAXXXXXXXXXXXXXXXXXXXF 243
K V + DF+VLA YM+
Sbjct: 61 KTYPSKEAYEIEVVQQLKEKQIDFVVLAGYMR---------------------------- 92
Query: 244 NMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGPI 303
++ L +Y ++NIH LLP+F G +QA A VK+ G T H+V E +D GPI
Sbjct: 93 --LVGPTLLGAYEGRIVNIHPSLLPAFPGLHAIEQAIRANVKVTGVTIHYVDEGMDTGPI 150
Query: 304 IEQ 306
I Q
Sbjct: 151 IAQ 153
>pdb|2YWR|A Chain A, Crystal Structure Of Gar Transformylase From Aquifex
Aeolicus
Length = 216
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 41/66 (62%)
Query: 243 FNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGP 302
F ILS FL+ + VINIH L+P+F+G KQA + GVK G T H V E +DAGP
Sbjct: 89 FXRILSHNFLKYFPNKVINIHPSLIPAFQGLHAQKQAVEFGVKFSGCTVHIVDESVDAGP 148
Query: 303 IIEQML 308
+I Q +
Sbjct: 149 VIVQAV 154
>pdb|3AUF|A Chain A, Crystal Structure Of Glycinamide Ribonucleotide
Transformylase 1 From Symbiobacterium Toebii
Length = 229
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 74/183 (40%), Gaps = 39/183 (21%)
Query: 130 KVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGI------P 183
++ VL S L L G +EG++P + VIS+ +++ + R G+ P
Sbjct: 24 RIGVLISGSGTNLQAILDGCREGRIPGRVAVVISDR---ADAYGLERARRAGVDALHMDP 80
Query: 184 YHYLCAKXXXXXXXXXXXVQNTDFLVLARYMQPVPLQKEAXXXXXXXXXXXXXXXXXXXF 243
Y D + LA YM+
Sbjct: 81 AAYPSRTAFDAALAERLQAYGVDLVCLAGYMR---------------------------- 112
Query: 244 NMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGPI 303
++ G L ++ ++NIH LLP+F G + +QA + GVK+ G T HFVT +D GPI
Sbjct: 113 --LVRGPMLTAFPNRILNIHPSLLPAFPGLEAQRQALEHGVKVAGCTVHFVTAGVDEGPI 170
Query: 304 IEQ 306
I Q
Sbjct: 171 ILQ 173
>pdb|4DS3|A Chain A, Crystal Structure Of Phosphoribosylglycinamide
Formyltransferase From Brucella Melitensis
Length = 209
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/61 (49%), Positives = 40/61 (65%)
Query: 246 ILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGPIIE 305
+LSG+F+ Y ++NIH LLP F G ++A DAG+KL G T H VTE +D GPI+
Sbjct: 98 LLSGRFIAPYEGRILNIHPSLLPLFPGLHTHQRALDAGMKLAGCTVHLVTEGMDEGPILA 157
Query: 306 Q 306
Q
Sbjct: 158 Q 158
>pdb|1CDD|A Chain A, Structures Of Apo And Complexed Escherichia Coli
Glycinamide Ribonucleotide Transformylase
pdb|1CDD|B Chain B, Structures Of Apo And Complexed Escherichia Coli
Glycinamide Ribonucleotide Transformylase
Length = 212
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 38/64 (59%)
Query: 243 FNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGP 302
F ILS F+ Y ++NIH LLP + G +QA + G + G + HFVT+ELD GP
Sbjct: 88 FMRILSPAFVSHYAGRLLNIHPSLLPKYPGLHTHRQALENGDEEHGTSVHFVTDELDGGP 147
Query: 303 IIEQ 306
+I Q
Sbjct: 148 VILQ 151
>pdb|1GRC|A Chain A, Crystal Structure Of Glycinamide Ribonucleotide
Transformylase From Escherichia Coli At 3.0 Angstroms
Resolution: A Target Enzyme For Chemotherapy
pdb|1GRC|B Chain B, Crystal Structure Of Glycinamide Ribonucleotide
Transformylase From Escherichia Coli At 3.0 Angstroms
Resolution: A Target Enzyme For Chemotherapy
pdb|1GAR|A Chain A, Towards Structure-Based Drug Design: Crystal Structure Of
A Multisubstrate Adduct Complex Of Glycinamide
Ribonucleotide Transformylase At 1.96 Angstroms
Resolution
pdb|1GAR|B Chain B, Towards Structure-Based Drug Design: Crystal Structure Of
A Multisubstrate Adduct Complex Of Glycinamide
Ribonucleotide Transformylase At 1.96 Angstroms
Resolution
pdb|1C2T|A Chain A, New Insights Into Inhibitor Design From The Crystal
Structure And Nmr Studies Of E. Coli Gar Transformylase
In Complex With Beta-Gar And
10-Formyl-5,8,10-Trideazafolic Acid.
pdb|1C2T|B Chain B, New Insights Into Inhibitor Design From The Crystal
Structure And Nmr Studies Of E. Coli Gar Transformylase
In Complex With Beta-Gar And
10-Formyl-5,8,10-Trideazafolic Acid.
pdb|1JKX|A Chain A, Unexpected Formation Of An Epoxide-Derived Multisubstrate
Adduct Inhibitor On The Active Site Of Gar
Transformylase
pdb|1JKX|B Chain B, Unexpected Formation Of An Epoxide-Derived Multisubstrate
Adduct Inhibitor On The Active Site Of Gar
Transformylase
pdb|1JKX|C Chain C, Unexpected Formation Of An Epoxide-Derived Multisubstrate
Adduct Inhibitor On The Active Site Of Gar
Transformylase
pdb|1JKX|D Chain D, Unexpected Formation Of An Epoxide-Derived Multisubstrate
Adduct Inhibitor On The Active Site Of Gar
Transformylase
pdb|1CDE|A Chain A, Structures Of Apo And Complexed Escherichia Coli
Glycinamide Ribonucleotide Transformylase
pdb|1CDE|B Chain B, Structures Of Apo And Complexed Escherichia Coli
Glycinamide Ribonucleotide Transformylase
pdb|1CDE|C Chain C, Structures Of Apo And Complexed Escherichia Coli
Glycinamide Ribonucleotide Transformylase
pdb|1CDE|D Chain D, Structures Of Apo And Complexed Escherichia Coli
Glycinamide Ribonucleotide Transformylase
Length = 212
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 38/64 (59%)
Query: 243 FNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGP 302
F ILS F+ Y ++NIH LLP + G +QA + G + G + HFVT+ELD GP
Sbjct: 88 FMRILSPAFVSHYAGRLLNIHPSLLPKYPGLHTHRQALENGDEEHGTSVHFVTDELDGGP 147
Query: 303 IIEQ 306
+I Q
Sbjct: 148 VILQ 151
>pdb|2GAR|A Chain A, A Ph-dependent Stablization Of An Active Site Loop
Observed From Low And High Ph Crystal Structures Of
Mutant Monomeric Glycinamide Ribonucleotide
Transformylase
pdb|3GAR|A Chain A, A Ph-dependent Stablization Of An Active Site Loop
Observed From Low And High Ph Crystal Structures Of
Mutant Monomeric Glycinamide Ribonucleotide
Transformylase
Length = 212
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 38/64 (59%)
Query: 243 FNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGP 302
F ILS F+ Y ++NIH LLP + G +QA + G + G + HFVT+ELD GP
Sbjct: 88 FMRILSPAFVSHYAGRLLNIHPSLLPKYPGLHTHRQALENGDEEHGTSVHFVTDELDGGP 147
Query: 303 IIEQ 306
+I Q
Sbjct: 148 VILQ 151
>pdb|1C3E|A Chain A, New Insights Into Inhibitor Design From The Crystal
Structure And Nmr Studies Of E. Coli Gar Transformylate
In Complex With Beta-Gar And
10-Formyl-5,8,10-Trideazafolic Acid.
pdb|1C3E|B Chain B, New Insights Into Inhibitor Design From The Crystal
Structure And Nmr Studies Of E. Coli Gar Transformylate
In Complex With Beta-Gar And
10-Formyl-5,8,10-Trideazafolic Acid
Length = 209
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 38/64 (59%)
Query: 243 FNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGP 302
F ILS F+ Y ++NIH LLP + G +QA + G + G + HFVT+ELD GP
Sbjct: 88 FMRILSPAFVSHYAGRLLNIHPSLLPKYPGLHTHRQALENGDEEHGTSVHFVTDELDGGP 147
Query: 303 IIEQ 306
+I Q
Sbjct: 148 VILQ 151
>pdb|3AV3|A Chain A, Crystal Structure Of Glycinamide Ribonucleotide
Transformylase 1 From Geobacillus Kaustophilus
Length = 212
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 36/66 (54%)
Query: 243 FNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGP 302
+ ++ L +Y ++NIH LLP+F G QA+ AGV G T H+V E D GP
Sbjct: 91 YXRLIGPTLLSAYEGKIVNIHPSLLPAFPGKDAIGQAYRAGVSETGVTVHYVDEGXDTGP 150
Query: 303 IIEQML 308
+I Q +
Sbjct: 151 VIAQRV 156
>pdb|3TQR|A Chain A, Structure Of The Phosphoribosylglycinamide
Formyltransferase (Purn) In Complex With Ches From
Coxiella Burnetii
Length = 215
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 35/64 (54%)
Query: 243 FNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGP 302
F L F+ Y INIH LLP + G ++A AG G + H+VTE+LDAGP
Sbjct: 92 FXRKLGKAFVSHYSGRXINIHPSLLPKYTGLNTHERALAAGETEHGVSVHYVTEDLDAGP 151
Query: 303 IIEQ 306
+I Q
Sbjct: 152 LICQ 155
>pdb|3DA8|A Chain A, Crystal Structure Of Purn From Mycobacterium Tuberculosis
pdb|3DA8|B Chain B, Crystal Structure Of Purn From Mycobacterium Tuberculosis
pdb|3DCJ|A Chain A, Crystal Structure Of Glycinamide Formyltransferase (Purn)
From Mycobacterium Tuberculosis In Complex With
5-Methyl-5, 6,7,8-Tetrahydrofolic Acid Derivative
pdb|3DCJ|B Chain B, Crystal Structure Of Glycinamide Formyltransferase (Purn)
From Mycobacterium Tuberculosis In Complex With
5-Methyl-5, 6,7,8-Tetrahydrofolic Acid Derivative
Length = 215
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 243 FNMILSGKFL-RSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAG 301
F IL +FL R YG+ +N H LLP+F G A GVK+ GAT H V D G
Sbjct: 98 FMRILGPQFLSRFYGR-TLNTHPALLPAFPGTHGVADALAYGVKVTGATVHLVDAGTDTG 156
Query: 302 PIIEQ 306
PI+ Q
Sbjct: 157 PILAQ 161
>pdb|4IQF|A Chain A, Crystal Structure Of Methyionyl-trna Formyltransferase
From Bacillus Anthracis
pdb|4IQF|B Chain B, Crystal Structure Of Methyionyl-trna Formyltransferase
From Bacillus Anthracis
pdb|4IQF|C Chain C, Crystal Structure Of Methyionyl-trna Formyltransferase
From Bacillus Anthracis
pdb|4IQF|D Chain D, Crystal Structure Of Methyionyl-trna Formyltransferase
From Bacillus Anthracis
Length = 317
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 33/65 (50%)
Query: 243 FNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGP 302
F I+ + L + IN+H LLP +GG P A G + G T + E+LDAG
Sbjct: 91 FGQIVPNEILEAPKYGCINVHASLLPELRGGAPIHYAIXEGKEKTGITIXYXVEKLDAGD 150
Query: 303 IIEQM 307
I+ Q+
Sbjct: 151 ILTQV 155
>pdb|3TQQ|A Chain A, Structure Of The Methionyl-Trna Formyltransferase (Fmt)
From Coxiella Burnetii
Length = 314
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 34/64 (53%)
Query: 243 FNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGP 302
+ +IL K L ++ +N+H LLP ++G P ++A AG + G + E LD G
Sbjct: 89 YGLILPKKALNAFRLGCVNVHASLLPRWRGAAPIQRAILAGDRETGISIXQXNEGLDTGD 148
Query: 303 IIEQ 306
++ +
Sbjct: 149 VLAK 152
>pdb|1Z7E|A Chain A, Crystal Structure Of Full Length Arna
pdb|1Z7E|B Chain B, Crystal Structure Of Full Length Arna
pdb|1Z7E|C Chain C, Crystal Structure Of Full Length Arna
pdb|1Z7E|D Chain D, Crystal Structure Of Full Length Arna
pdb|1Z7E|E Chain E, Crystal Structure Of Full Length Arna
pdb|1Z7E|F Chain F, Crystal Structure Of Full Length Arna
Length = 660
Score = 35.4 bits (80), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 23/47 (48%)
Query: 261 NIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGPIIEQM 307
N+H LLP ++G P G G T H + + DAG I+ Q+
Sbjct: 102 NLHGSLLPKYRGRAPLNWVLVNGETETGVTLHRMVKRADAGAIVAQL 148
>pdb|2BLN|A Chain A, N-Terminal Formyltransferase Domain Of Arna In Complex
With N-5-Formyltetrahydrofolate And Ump
pdb|2BLN|B Chain B, N-Terminal Formyltransferase Domain Of Arna In Complex
With N-5-Formyltetrahydrofolate And Ump
Length = 305
Score = 34.7 bits (78), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 23/47 (48%)
Query: 261 NIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGPIIEQM 307
N+H LLP ++G P G G T H + + DAG I+ Q+
Sbjct: 102 NLHGSLLPKYRGRAPLNWVLVNGETETGVTLHRMVKRADAGAIVAQL 148
>pdb|1YRW|A Chain A, Crystal Structure Of E.Coli Arna Transformylase Domain
Length = 302
Score = 34.7 bits (78), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 23/47 (48%)
Query: 261 NIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGPIIEQM 307
N+H LLP ++G P G G T H + + DAG I+ Q+
Sbjct: 102 NLHGSLLPKYRGRAPLNWVLVNGETETGVTLHRMVKRADAGAIVAQL 148
>pdb|3R8X|A Chain A, Crystal Structure Of Methionyl-Trna Formyltransferase From
Yersinia Pestis Complexed With L-Methionine
Length = 318
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 32/65 (49%)
Query: 243 FNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGP 302
+ +IL L IN+H LLP ++G P +++ AG + G T + LD G
Sbjct: 94 YGLILPAAVLAMPRLGCINVHGSLLPRWRGAAPIQRSVWAGDEKTGITIMQMDIGLDTGA 153
Query: 303 IIEQM 307
++ ++
Sbjct: 154 MLHKI 158
>pdb|1FMT|A Chain A, Methionyl-Trnafmet Formyltransferase From Escherichia Coli
pdb|1FMT|B Chain B, Methionyl-Trnafmet Formyltransferase From Escherichia Coli
pdb|2FMT|A Chain A, Methionyl-Trnafmet Formyltransferase Complexed With
Formyl- Methionyl-Trnafmet
pdb|2FMT|B Chain B, Methionyl-Trnafmet Formyltransferase Complexed With
Formyl- Methionyl-Trnafmet
Length = 314
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 31/65 (47%)
Query: 243 FNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGP 302
+ +IL L IN+H LLP ++G P +++ AG G T + LD G
Sbjct: 90 YGLILPKAVLEMPRLGCINVHGSLLPRWRGAAPIQRSLWAGDAETGVTIMQMDVGLDTGD 149
Query: 303 IIEQM 307
++ ++
Sbjct: 150 MLYKL 154
>pdb|3Q0I|A Chain A, Methionyl-Trna Formyltransferase From Vibrio Cholerae
Length = 318
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 27/59 (45%)
Query: 243 FNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAG 301
+ ++L L + IN+H +LP ++G P +++ AG G T LD G
Sbjct: 94 YGLLLPKVVLDTPKLGCINVHGSILPRWRGAAPIQRSIWAGDSETGVTIXQXDVGLDTG 152
>pdb|1QRI|A Chain A, X-Ray Structure Of The Dna-Eco Ri Endonuclease Complexes
With An E144d Mutation At 2.7 A
Length = 261
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Query: 256 GKDVINIHHGLLPSFKGGK---PAKQAFDAGVKLIGATSHFVTEE 297
GKD+INI +GLL +G + A A D K I ++F+ E
Sbjct: 100 GKDIINIRNGLLVGKRGDQDLMAAGNAIDRSHKNISEIANFMLSE 144
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.139 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,478,468
Number of Sequences: 62578
Number of extensions: 321132
Number of successful extensions: 680
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 640
Number of HSP's gapped (non-prelim): 36
length of query: 321
length of database: 14,973,337
effective HSP length: 99
effective length of query: 222
effective length of database: 8,778,115
effective search space: 1948741530
effective search space used: 1948741530
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.3 bits)