BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020794
(321 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O34990|PURU_BACSU Formyltetrahydrofolate deformylase OS=Bacillus subtilis (strain
168) GN=purU PE=3 SV=2
Length = 300
Score = 152 bits (385), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 92/267 (34%), Positives = 143/267 (53%), Gaps = 44/267 (16%)
Query: 49 CPDEVGIVAKLSECIASRGGNILAADVFVPE-KKNVFYSRSEFIFDPIKWPREQMDEDFF 107
CPD+ GIV+ +S + G NI+ ++ + + + F+ R EF I+ + + F
Sbjct: 26 CPDQPGIVSAVSAFLFEHGANIIESNQYTTDPEGGRFFLRIEFDCAGIREKKSSLQAAFA 85
Query: 108 KLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDR 167
+++ F+ S+ ++ +VA+ SK+ HCL + ++ WQ G L EI VISNH+
Sbjct: 86 SVAEKFDMTWSLTLASELK---RVAIFVSKELHCLHELIWEWQTGNLMAEIAVVISNHEE 142
Query: 168 GPNSHVIRFLERHGIPYHYLCAKENER---EEELLELVQ--NTDFLVLARYMQPVPLQKE 222
+ER IP+HY+ A ++ R E++ LEL++ + D +VLARYMQ
Sbjct: 143 AR-----ELVERLNIPFHYMKANKDIRAEVEKKQLELLEQYDVDVIVLARYMQ------- 190
Query: 223 AYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDA 282
IL+ F+ ++ +INIHH LP+F G P K+A++
Sbjct: 191 -----------------------ILTPDFVSAHPNRIINIHHSFLPAFIGANPYKRAYER 227
Query: 283 GVKLIGATSHFVTEELDAGPIIEQMLE 309
GVKLIGATSH+VT +LD GPIIEQ +E
Sbjct: 228 GVKLIGATSHYVTNDLDEGPIIEQDIE 254
>sp|Q55135|PURU_SYNY3 Formyltetrahydrofolate deformylase OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=purU PE=3 SV=1
Length = 284
Score = 138 bits (348), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 89/263 (33%), Positives = 136/263 (51%), Gaps = 44/263 (16%)
Query: 49 CPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK 108
CPD+ GIVA++++ I GNI+ AD +F +R E+ D + R ++ + +
Sbjct: 12 CPDQPGIVAQIAQFIYQNQGNIIHADQHTDFSSGLFLNRVEWQLDNFRLSRPELLSAWSQ 71
Query: 109 LSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRG 168
L++ A + D P+ +A+ SKQ+HCL+D L+ W+ G+L EI +ISNH
Sbjct: 72 LAEQLQATWQI-HFSDQLPR--LALWVSKQDHCLLDILWRWRSGELRCEIPLIISNH--- 125
Query: 169 PNSHVIRFLERHGIPYHYL-CAKENEREEELLELV----QNTDFLVLARYMQPVPLQKEA 223
P+ I ++ GI +H L KEN+ +E EL D +VLA+Y+Q
Sbjct: 126 PDLKSIA--DQFGIDFHCLPITKENKLAQETAELALLKQYQIDLVVLAKYLQ-------- 175
Query: 224 YLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAG 283
IL+ F+ + ++INIHH LP+F G P +A + G
Sbjct: 176 ----------------------ILTTDFVVQF-PNIINIHHSFLPAFPGANPYHRAHERG 212
Query: 284 VKLIGATSHFVTEELDAGPIIEQ 306
VK+IGAT+H+ T +LD GPIIEQ
Sbjct: 213 VKIIGATAHYATAQLDEGPIIEQ 235
>sp|P0A5T6|PURU_MYCTU Formyltetrahydrofolate deformylase OS=Mycobacterium tuberculosis
GN=purU PE=3 SV=1
Length = 310
Score = 131 bits (330), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 92/269 (34%), Positives = 135/269 (50%), Gaps = 48/269 (17%)
Query: 46 VFHCPDEVGIVAKLSECIASRGGNILAADVF--VPEKKNVFYSRSEFIFDPIKWPREQMD 103
+ C D GI+A +S +A G NI++ D PE F R+ F + +++
Sbjct: 34 LLRCHDRPGIIAAVSTFLARAGANIISLDQHSTAPEG-GTFLQRAIFHLPGLTAAVDELQ 92
Query: 104 EDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVIS 163
DF S + + R + +VA++AS ++HCL+D L+ + G+L + + VI+
Sbjct: 93 RDFG--STVADKFGIDYRFAEAAKPKRVAIMASTEDHCLLDLLWRNRRGELEMSVVMVIA 150
Query: 164 NHDRGPN--SHVIRFLERHGIPYHYLCAKENEREE----ELLELVQNTDFLVLARYMQPV 217
NH P+ +HV F G+P+ ++ A + R E +L L N D +VLARYMQ
Sbjct: 151 NH---PDLAAHVRPF----GVPFIHIPATRDTRTEAEQRQLQLLSGNVDLVVLARYMQ-- 201
Query: 218 PLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAK 277
ILS FL + G +INIHH LP+F G P +
Sbjct: 202 ----------------------------ILSPGFLEAIGCPLINIHHSFLPAFTGAAPYQ 233
Query: 278 QAFDAGVKLIGATSHFVTEELDAGPIIEQ 306
+A + GVKLIGAT+H+VTE LD GPIIEQ
Sbjct: 234 RARERGVKLIGATAHYVTEVLDEGPIIEQ 262
>sp|P0A5T7|PURU_MYCBO Formyltetrahydrofolate deformylase OS=Mycobacterium bovis (strain
ATCC BAA-935 / AF2122/97) GN=purU PE=3 SV=1
Length = 310
Score = 131 bits (330), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 92/269 (34%), Positives = 135/269 (50%), Gaps = 48/269 (17%)
Query: 46 VFHCPDEVGIVAKLSECIASRGGNILAADVF--VPEKKNVFYSRSEFIFDPIKWPREQMD 103
+ C D GI+A +S +A G NI++ D PE F R+ F + +++
Sbjct: 34 LLRCHDRPGIIAAVSTFLARAGANIISLDQHSTAPEG-GTFLQRAIFHLPGLTAAVDELQ 92
Query: 104 EDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVIS 163
DF S + + R + +VA++AS ++HCL+D L+ + G+L + + VI+
Sbjct: 93 RDFG--STVADKFGIDYRFAEAAKPKRVAIMASTEDHCLLDLLWRNRRGELEMSVVMVIA 150
Query: 164 NHDRGPN--SHVIRFLERHGIPYHYLCAKENEREE----ELLELVQNTDFLVLARYMQPV 217
NH P+ +HV F G+P+ ++ A + R E +L L N D +VLARYMQ
Sbjct: 151 NH---PDLAAHVRPF----GVPFIHIPATRDTRTEAEQRQLQLLSGNVDLVVLARYMQ-- 201
Query: 218 PLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAK 277
ILS FL + G +INIHH LP+F G P +
Sbjct: 202 ----------------------------ILSPGFLEAIGCPLINIHHSFLPAFTGAAPYQ 233
Query: 278 QAFDAGVKLIGATSHFVTEELDAGPIIEQ 306
+A + GVKLIGAT+H+VTE LD GPIIEQ
Sbjct: 234 RARERGVKLIGATAHYVTEVLDEGPIIEQ 262
>sp|Q03432|PURU_HAEIN Formyltetrahydrofolate deformylase OS=Haemophilus influenzae
(strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=purU PE=3
SV=2
Length = 278
Score = 123 bits (309), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 92/282 (32%), Positives = 138/282 (48%), Gaps = 56/282 (19%)
Query: 49 CPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEF--IFDPIKWPREQMDEDF 106
CPD+ G++AK++ NIL + FV + F+ R+E IF+ + ED
Sbjct: 11 CPDDKGLIAKITNICYKHQLNILHNNEFVDFETKHFFMRTELEGIFN-----EATLLEDL 65
Query: 107 -FKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNH 165
+ L + N R+ K ++ +L +K+ HCL D L G L VEI VI NH
Sbjct: 66 KYSLPEETNC-----RLIGTQRK-RIVILVTKEAHCLGDILMKNYYGALDVEIAAVIGNH 119
Query: 166 DRGPNSHVIRFLERHGIPYHYLCAKEN----EREEELLELVQ--NTDFLVLARYMQPVPL 219
D ++ +ER IP+H L + EN E ++ L E + D++VLA+YM+
Sbjct: 120 D-----NLRELVERFNIPFH-LVSHENLTRVEHDKLLAEKIDEYTPDYIVLAKYMR---- 169
Query: 220 QKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQA 279
+L+ +F+ Y VINIHH LP+F G KP +QA
Sbjct: 170 --------------------------VLNPEFVARYPNRVINIHHSFLPAFIGAKPYQQA 203
Query: 280 FDAGVKLIGATSHFVTEELDAGPIIEQMLELLAISFATELML 321
+ GVK+IGAT+HF+ ELD GPII Q + + ++ E M+
Sbjct: 204 YKRGVKIIGATAHFINNELDQGPIIMQNVINVDHTYNAEAMM 245
>sp|P37051|PURU_ECOLI Formyltetrahydrofolate deformylase OS=Escherichia coli (strain K12)
GN=purU PE=1 SV=1
Length = 280
Score = 122 bits (306), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 79/283 (27%), Positives = 136/283 (48%), Gaps = 58/283 (20%)
Query: 49 CPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK 108
CPD+ G++A+++ NI+ + FV + F+ R+E E F
Sbjct: 13 CPDQKGLIARITNICYKHELNIVQNNEFVDHRTGRFFMRTEL-------------EGIFN 59
Query: 109 LSKMFNAMRSVV---RVPDIDP--KYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVIS 163
S + + S + V +++P + ++ +L +K+ HCL D L G L VEI VI
Sbjct: 60 DSTLLADLDSALPEGSVRELNPAGRRRIVILVTKEAHCLGDLLMKANYGGLDVEIAAVIG 119
Query: 164 NHDRGPNSHVIRFLERHGIPYHYLCAK---ENEREEELLELVQ--NTDFLVLARYMQPVP 218
NHD + +ER IP+ + + NE ++++ + + D++VLA+YM+
Sbjct: 120 NHDT-----LRSLVERFDIPFELVSHEGLTRNEHDQKMADAIDAYQPDYVVLAKYMR--- 171
Query: 219 LQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQ 278
+L+ +F+ + +INIHH LP+F G +P Q
Sbjct: 172 ---------------------------VLTPEFVARFPNKIINIHHSFLPAFIGARPYHQ 204
Query: 279 AFDAGVKLIGATSHFVTEELDAGPIIEQMLELLAISFATELML 321
A++ GVK+IGAT+H+V + LD GPII Q + + ++ E M+
Sbjct: 205 AYERGVKIIGATAHYVNDNLDEGPIIMQDVIHVDHTYTAEDMM 247
>sp|P0A441|PURU_SHIFL Formyltetrahydrofolate deformylase OS=Shigella flexneri GN=purU
PE=3 SV=1
Length = 280
Score = 122 bits (305), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 79/283 (27%), Positives = 136/283 (48%), Gaps = 58/283 (20%)
Query: 49 CPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK 108
CPD+ G++A+++ NI+ + FV + F+ R+E E F
Sbjct: 13 CPDQKGLIARITNICYKHELNIVQNNEFVDHRTGRFFMRTEL-------------EGIFN 59
Query: 109 LSKMFNAMRSVV---RVPDIDP--KYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVIS 163
S + + S + V +++P + ++ +L +K+ HCL D L G L VEI VI
Sbjct: 60 DSTLLADLDSALPEGSVRELNPAGRRRIVILVTKEAHCLGDLLMKANYGGLDVEIAAVIG 119
Query: 164 NHDRGPNSHVIRFLERHGIPYHYLCAK---ENEREEELLELVQ--NTDFLVLARYMQPVP 218
NHD + +ER IP+ + + NE ++++ + + D++VLA+YM+
Sbjct: 120 NHDT-----LRSLVERFDIPFELVSHEGLSRNEHDQKMADAIDAYQPDYVVLAKYMR--- 171
Query: 219 LQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQ 278
+L+ +F+ + +INIHH LP+F G +P Q
Sbjct: 172 ---------------------------VLTPEFVARFPNKIINIHHSFLPAFIGARPYHQ 204
Query: 279 AFDAGVKLIGATSHFVTEELDAGPIIEQMLELLAISFATELML 321
A++ GVK+IGAT+H+V + LD GPII Q + + ++ E M+
Sbjct: 205 AYERGVKIIGATAHYVNDNLDEGPIIMQDVIHVDHTYTAEDMM 247
>sp|P0A440|PURU_ECOL6 Formyltetrahydrofolate deformylase OS=Escherichia coli O6:H1
(strain CFT073 / ATCC 700928 / UPEC) GN=purU PE=3 SV=1
Length = 280
Score = 122 bits (305), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 79/283 (27%), Positives = 136/283 (48%), Gaps = 58/283 (20%)
Query: 49 CPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK 108
CPD+ G++A+++ NI+ + FV + F+ R+E E F
Sbjct: 13 CPDQKGLIARITNICYKHELNIVQNNEFVDHRTGRFFMRTEL-------------EGIFN 59
Query: 109 LSKMFNAMRSVV---RVPDIDP--KYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVIS 163
S + + S + V +++P + ++ +L +K+ HCL D L G L VEI VI
Sbjct: 60 DSTLLADLDSALPEGSVRELNPAGRRRIVILVTKEAHCLGDLLMKANYGGLDVEIAAVIG 119
Query: 164 NHDRGPNSHVIRFLERHGIPYHYLCAK---ENEREEELLELVQ--NTDFLVLARYMQPVP 218
NHD + +ER IP+ + + NE ++++ + + D++VLA+YM+
Sbjct: 120 NHDT-----LRSLVERFDIPFELVSHEGLSRNEHDQKMADAIDAYQPDYVVLAKYMR--- 171
Query: 219 LQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQ 278
+L+ +F+ + +INIHH LP+F G +P Q
Sbjct: 172 ---------------------------VLTPEFVARFPNKIINIHHSFLPAFIGARPYHQ 204
Query: 279 AFDAGVKLIGATSHFVTEELDAGPIIEQMLELLAISFATELML 321
A++ GVK+IGAT+H+V + LD GPII Q + + ++ E M+
Sbjct: 205 AYERGVKIIGATAHYVNDNLDEGPIIMQDVIHVDHTYTAEDMM 247
>sp|Q46339|PURU_CORS1 Formyltetrahydrofolate deformylase OS=Corynebacterium sp. (strain
P-1) GN=purU PE=3 SV=1
Length = 286
Score = 120 bits (300), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 85/268 (31%), Positives = 130/268 (48%), Gaps = 43/268 (16%)
Query: 46 VFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDED 105
CP+ +GIV ++ + I+ + + R +F D + + +
Sbjct: 10 TLQCPEGIGIVHAVTGFLVRHQRTIVELKQYDDMSAGRLFLRVDFAGDSAPDLLDALRSE 69
Query: 106 FFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNH 165
F +++ F+ M +R + K KV ++ SK EHCL D L+ G LP+E+ V SNH
Sbjct: 70 FSEVAAKFD-MDWQLR--ERGQKTKVLIMVSKFEHCLQDLLFRMHSGDLPIEVVGVASNH 126
Query: 166 DRGPNSHVIRFLERHGIPYHYLCAKENER---EEELLELVQNT--DFLVLARYMQPVPLQ 220
P+ + +E +GI +H++ ++ + E LLEL+ T + +VLARYMQ
Sbjct: 127 ---PDHRSL--VEWYGIGFHHIPISKDTKPRAEAALLELIDQTGAELVVLARYMQ----- 176
Query: 221 KEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAF 280
L+ + L+GK INIHH LPSFKG KP QA+
Sbjct: 177 -----------------VLSDHLASELTGK--------TINIHHSFLPSFKGAKPYHQAW 211
Query: 281 DAGVKLIGATSHFVTEELDAGPIIEQML 308
+ GVK +GAT+H+V ELD GPII Q +
Sbjct: 212 ERGVKTVGATAHYVNSELDEGPIIAQQV 239
>sp|P21872|PUR2_CHICK Trifunctional purine biosynthetic protein adenosine-3 OS=Gallus
gallus GN=GART PE=2 SV=1
Length = 1003
Score = 72.8 bits (177), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 78/179 (43%), Gaps = 27/179 (15%)
Query: 128 KYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYL 187
K KVAVL S L + ++ EI V+SN +R ER GIP +
Sbjct: 803 KVKVAVLISGTGTNLEALINSTKKPTSFAEIVLVVSNK---AGVEGLRKAERAGIPTRVI 859
Query: 188 CAKENEREEELLELVQNTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMIL 247
K+ E V ++LE S + + F IL
Sbjct: 860 DHKQYGSRTEFDSAVD------------------------RVLEEFSVELICLAGFMRIL 895
Query: 248 SGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGPIIEQ 306
SG F++ + ++NIH LLPSFKG K +AGV++ G T HFV EE+DAG II Q
Sbjct: 896 SGPFVKKWEGKILNIHPSLLPSFKGANAHKLVLEAGVRVTGCTVHFVAEEVDAGAIIFQ 954
>sp|Q59A32|PUR2_BOVIN Trifunctional purine biosynthetic protein adenosine-3 OS=Bos taurus
GN=GART PE=2 SV=1
Length = 1010
Score = 72.8 bits (177), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 49/79 (62%)
Query: 228 KLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLI 287
++LE S+ + F ILSG F+R + ++NIH LLPSFKG +Q DAGV +
Sbjct: 880 EVLEEFSTDIVCLAGFMRILSGPFVRKWNGKMLNIHPSLLPSFKGSNAHEQVLDAGVTVT 939
Query: 288 GATSHFVTEELDAGPIIEQ 306
G T HFV E++DAG II Q
Sbjct: 940 GCTVHFVAEDVDAGQIILQ 958
>sp|Q64737|PUR2_MOUSE Trifunctional purine biosynthetic protein adenosine-3 OS=Mus
musculus GN=Gart PE=2 SV=3
Length = 1010
Score = 68.9 bits (167), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 47/78 (60%)
Query: 229 LLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIG 288
+LE S + F ILSG F+R + ++NIH LLPSFKG +Q +AGV + G
Sbjct: 881 VLEEFSVDIVCLAGFMRILSGPFVRKWDGKMLNIHPSLLPSFKGSNAHEQVLEAGVTITG 940
Query: 289 ATSHFVTEELDAGPIIEQ 306
T HFV E++DAG II Q
Sbjct: 941 CTVHFVAEDVDAGQIILQ 958
>sp|P22102|PUR2_HUMAN Trifunctional purine biosynthetic protein adenosine-3 OS=Homo
sapiens GN=GART PE=1 SV=1
Length = 1010
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 47/78 (60%)
Query: 229 LLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIG 288
+LE S + F ILSG F++ + ++NIH LLPSFKG +QA + GV + G
Sbjct: 881 VLEEFSIDIVCLAGFMRILSGPFVQKWNGKMLNIHPSLLPSFKGSNAHEQALETGVTVTG 940
Query: 289 ATSHFVTEELDAGPIIEQ 306
T HFV E++DAG II Q
Sbjct: 941 CTVHFVAEDVDAGQIILQ 958
>sp|P12040|PUR3_BACSU Phosphoribosylglycinamide formyltransferase OS=Bacillus subtilis
(strain 168) GN=purN PE=3 SV=2
Length = 195
Score = 65.9 bits (159), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Query: 238 SLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEE 297
+L Y +I L++YG +INIH LLP+F G QAF AGVK+ G T H+V E
Sbjct: 85 ALAGYMRLI-GDTLLQAYGGKIINIHPSLLPAFPGIDAVGQAFRAGVKVAGITVHYVDEG 143
Query: 298 LDAGPIIEQ 306
+D GPII Q
Sbjct: 144 MDTGPIIAQ 152
>sp|P43846|PUR3_HAEIN Phosphoribosylglycinamide formyltransferase OS=Haemophilus
influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
GN=purN PE=3 SV=1
Length = 212
Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 77/183 (42%), Gaps = 39/183 (21%)
Query: 130 KVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCA 189
K+AVL S Q L + G +P +I CVISN +++ + ++ IP
Sbjct: 3 KIAVLISGQGTNLQTIIDACHSGDIPAKIACVISNK---ADAYGLVRAKQAQIPQAVFLR 59
Query: 190 KENEREEELLELVQN------TDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYF 243
K E+ + + + D +VLA YM+
Sbjct: 60 KNFSNNLEMDDAIGDYLQSLAVDLIVLAGYMK---------------------------- 91
Query: 244 NMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGPI 303
IL+ KF + + ++NIH LLP + G ++A +AG G T HFV EE+D G I
Sbjct: 92 --ILTPKFTQRFAGKILNIHPSLLPKYAGLNTYQRAIEAGDNEHGTTVHFVNEEVDGGAI 149
Query: 304 IEQ 306
+ Q
Sbjct: 150 VLQ 152
>sp|Q5HH12|PUR3_STAAC Phosphoribosylglycinamide formyltransferase OS=Staphylococcus
aureus (strain COL) GN=purN PE=3 SV=1
Length = 188
Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 83/184 (45%), Gaps = 40/184 (21%)
Query: 130 KVAVLASKQEHCLVDFLYGWQEGKLP-VEITCVISNHDRGPNSHVIRFLERHGIPYHYLC 188
K+A+ AS + + + GKL +E+T + ++H N+ I ++H IP +
Sbjct: 3 KIAIFASGSGSNFENIVEHVESGKLENIEVTALYTDHQ---NAFCIDRAKKHDIPVYINE 59
Query: 189 AKENER----EEELLELVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSY 242
K+ + E+ L+ L+ ++++LA YM+ +G LL S K
Sbjct: 60 PKQFDSKAAYEQHLVTLLNEDKVEWIILAGYMR--------LIGPDLLASFEGK------ 105
Query: 243 FNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGP 302
++NIH LLP +KG QA+ +G + G+T H+V +D G
Sbjct: 106 ----------------ILNIHPSLLPKYKGIDAIGQAYHSGDTITGSTVHYVDSGMDTGE 149
Query: 303 IIEQ 306
IIEQ
Sbjct: 150 IIEQ 153
>sp|B1HQE4|FMT_LYSSC Methionyl-tRNA formyltransferase OS=Lysinibacillus sphaericus
(strain C3-41) GN=fmt PE=3 SV=1
Length = 313
Score = 55.8 bits (133), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 53/110 (48%), Gaps = 15/110 (13%)
Query: 212 RYMQPVPLQKEAY-LGYKLLESLSSKGS--------------LTSYFNMILSGKFLRSYG 256
R + P P++ A LG +++ +GS +T+ F IL + L +
Sbjct: 42 RILTPPPVKAAALELGLPIIQPEKLRGSEELQQILSLQPDIVITAAFGQILPKELLDAPS 101
Query: 257 KDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGPIIEQ 306
IN+H LLP ++GG P QA G K G T ++ E+LDAG II Q
Sbjct: 102 LGCINVHASLLPKYRGGAPIHQAIIDGEKETGVTIMYMAEKLDAGDIISQ 151
>sp|Q6GI12|PUR3_STAAR Phosphoribosylglycinamide formyltransferase OS=Staphylococcus
aureus (strain MRSA252) GN=purN PE=3 SV=1
Length = 188
Score = 55.8 bits (133), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 82/184 (44%), Gaps = 40/184 (21%)
Query: 130 KVAVLASKQEHCLVDFLYGWQEGKLP-VEITCVISNHDRGPNSHVIRFLERHGIPYHYLC 188
K+A+ AS + + + GKL +E+T + ++H N+ I ++H IP +
Sbjct: 3 KIAIFASGSGSNFENIVEHVESGKLENIEVTALYTDHQ---NAFCIDRAKKHDIPVYINE 59
Query: 189 AKE----NEREEELLELVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSY 242
K+ E+ L+ L+ ++++LA YM+ +G LL S K
Sbjct: 60 PKQFGSKAAYEQHLVTLLNEDKVEWIILAGYMR--------LIGPDLLASFEGK------ 105
Query: 243 FNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGP 302
++NIH LLP +KG QA+ +G + G+T H+V +D G
Sbjct: 106 ----------------ILNIHPSLLPKYKGIDAIGQAYHSGDTITGSTVHYVDSGMDTGE 149
Query: 303 IIEQ 306
IIEQ
Sbjct: 150 IIEQ 153
>sp|Q8NX89|PUR3_STAAW Phosphoribosylglycinamide formyltransferase OS=Staphylococcus
aureus (strain MW2) GN=purN PE=3 SV=1
Length = 188
Score = 55.1 bits (131), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 83/184 (45%), Gaps = 40/184 (21%)
Query: 130 KVAVLASKQEHCLVDFLYGWQEGKLP-VEITCVISNHDRGPNSHVIRFLERHGIPYHYLC 188
K+A+ AS + + + GKL +E+T + ++H N+ I ++H IP +
Sbjct: 3 KIAIFASGSGSNFENIVEHVESGKLENIEVTALYTDHQ---NAFCIDRAKKHDIPVYINE 59
Query: 189 AKENER----EEELLELVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSY 242
K+ + E+ L+ L+ ++++LA YM+ +G LL S K
Sbjct: 60 PKQFDSKAAYEQHLVSLLNEDKVEWIILAGYMR--------LIGPDLLASFEGK------ 105
Query: 243 FNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGP 302
++NIH LLP +KG QA+ +G + G+T H+V +D G
Sbjct: 106 ----------------ILNIHPSLLPKYKGIDAIGQAYHSGDTITGSTVHYVDCGMDTGE 149
Query: 303 IIEQ 306
IIEQ
Sbjct: 150 IIEQ 153
>sp|Q6GAE1|PUR3_STAAS Phosphoribosylglycinamide formyltransferase OS=Staphylococcus
aureus (strain MSSA476) GN=purN PE=3 SV=1
Length = 188
Score = 55.1 bits (131), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 83/184 (45%), Gaps = 40/184 (21%)
Query: 130 KVAVLASKQEHCLVDFLYGWQEGKLP-VEITCVISNHDRGPNSHVIRFLERHGIPYHYLC 188
K+A+ AS + + + GKL +E+T + ++H N+ I ++H IP +
Sbjct: 3 KIAIFASGSGSNFENIVEHVESGKLENIEVTALYTDHQ---NAFCIDRAKKHDIPVYINE 59
Query: 189 AKENER----EEELLELVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSY 242
K+ + E+ L+ L+ ++++LA YM+ +G LL S K
Sbjct: 60 PKQFDSKAAYEQHLVSLLNEDKVEWIILAGYMR--------LIGPDLLASFEGK------ 105
Query: 243 FNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGP 302
++NIH LLP +KG QA+ +G + G+T H+V +D G
Sbjct: 106 ----------------ILNIHPSLLPKYKGIDAIGQAYHSGDTITGSTVHYVDCGMDTGE 149
Query: 303 IIEQ 306
IIEQ
Sbjct: 150 IIEQ 153
>sp|P99162|PUR3_STAAN Phosphoribosylglycinamide formyltransferase OS=Staphylococcus
aureus (strain N315) GN=purN PE=1 SV=1
Length = 188
Score = 55.1 bits (131), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 83/184 (45%), Gaps = 40/184 (21%)
Query: 130 KVAVLASKQEHCLVDFLYGWQEGKLP-VEITCVISNHDRGPNSHVIRFLERHGIPYHYLC 188
K+A+ AS + + + GKL +E+T + ++H N+ I ++H IP +
Sbjct: 3 KIAIFASGSGSNFENIVEHVESGKLENIEVTALYTDHQ---NAFCIDRAKKHDIPVYINE 59
Query: 189 AKENER----EEELLELVQN--TDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSY 242
K+ + E+ L+ L+ ++++LA YM+ +G LL S K
Sbjct: 60 PKQFDSKAAYEQHLVTLLNKDKVEWIILAGYMR--------LIGPDLLASFEGK------ 105
Query: 243 FNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGP 302
++NIH LLP +KG QA+ +G + G+T H+V +D G
Sbjct: 106 ----------------ILNIHPSLLPKYKGIDAIGQAYHSGDTITGSTVHYVDCGMDTGE 149
Query: 303 IIEQ 306
IIEQ
Sbjct: 150 IIEQ 153
>sp|P65897|PUR3_STAAM Phosphoribosylglycinamide formyltransferase OS=Staphylococcus
aureus (strain Mu50 / ATCC 700699) GN=purN PE=1 SV=1
Length = 188
Score = 55.1 bits (131), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 83/184 (45%), Gaps = 40/184 (21%)
Query: 130 KVAVLASKQEHCLVDFLYGWQEGKLP-VEITCVISNHDRGPNSHVIRFLERHGIPYHYLC 188
K+A+ AS + + + GKL +E+T + ++H N+ I ++H IP +
Sbjct: 3 KIAIFASGSGSNFENIVEHVESGKLENIEVTALYTDHQ---NAFCIDRAKKHDIPVYINE 59
Query: 189 AKENER----EEELLELVQN--TDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSY 242
K+ + E+ L+ L+ ++++LA YM+ +G LL S K
Sbjct: 60 PKQFDSKAAYEQHLVTLLNKDKVEWIILAGYMR--------LIGPDLLASFEGK------ 105
Query: 243 FNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGP 302
++NIH LLP +KG QA+ +G + G+T H+V +D G
Sbjct: 106 ----------------ILNIHPSLLPKYKGIDAIGQAYHSGDTITGSTVHYVDCGMDTGE 149
Query: 303 IIEQ 306
IIEQ
Sbjct: 150 IIEQ 153
>sp|P08179|PUR3_ECOLI Phosphoribosylglycinamide formyltransferase OS=Escherichia coli
(strain K12) GN=purN PE=1 SV=1
Length = 212
Score = 55.1 bits (131), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 38/64 (59%)
Query: 243 FNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGP 302
F ILS F+ Y ++NIH LLP + G +QA + G + G + HFVT+ELD GP
Sbjct: 88 FMRILSPAFVSHYAGRLLNIHPSLLPKYPGLHTHRQALENGDEEHGTSVHFVTDELDGGP 147
Query: 303 IIEQ 306
+I Q
Sbjct: 148 VILQ 151
>sp|P00967|PUR2_DROME Trifunctional purine biosynthetic protein adenosine-3 OS=Drosophila
melanogaster GN=ade3 PE=1 SV=2
Length = 1353
Score = 54.7 bits (130), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 37/64 (57%)
Query: 243 FNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGP 302
F +LS F+R + ++NIH LLP + G KQA +AG K G T HFV E +D G
Sbjct: 1243 FMRVLSAPFVREWRGRLVNIHPSLLPKYPGLHVQKQALEAGEKESGCTVHFVDEGVDTGA 1302
Query: 303 IIEQ 306
II Q
Sbjct: 1303 IIVQ 1306
>sp|Q8CT28|PUR3_STAES Phosphoribosylglycinamide formyltransferase OS=Staphylococcus
epidermidis (strain ATCC 12228) GN=purN PE=3 SV=1
Length = 188
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 44/79 (55%)
Query: 228 KLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLI 287
KLL S + + + + ++ L++Y ++NIH LLP FKG QA ++G +
Sbjct: 75 KLLSSEEVQWIVLAGYMRLVGQDLLQAYEGRILNIHPSLLPKFKGLDAIGQALESGDTVT 134
Query: 288 GATSHFVTEELDAGPIIEQ 306
G+T H+V +D G IIEQ
Sbjct: 135 GSTVHYVDSGMDTGEIIEQ 153
>sp|Q5HQ98|PUR3_STAEQ Phosphoribosylglycinamide formyltransferase OS=Staphylococcus
epidermidis (strain ATCC 35984 / RP62A) GN=purN PE=3
SV=1
Length = 188
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 44/79 (55%)
Query: 228 KLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLI 287
KLL S + + + + ++ L++Y ++NIH LLP FKG QA ++G +
Sbjct: 75 KLLSSEEVQWIVLAGYMRLVGQDLLQAYEGRILNIHPSLLPKFKGLDAIGQALESGDTVT 134
Query: 288 GATSHFVTEELDAGPIIEQ 306
G+T H+V +D G IIEQ
Sbjct: 135 GSTVHYVDSGMDTGEIIEQ 153
>sp|P16340|PUR2_DROPS Trifunctional purine biosynthetic protein adenosine-3 OS=Drosophila
pseudoobscura pseudoobscura GN=ade3 PE=3 SV=2
Length = 1364
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 82/192 (42%), Gaps = 49/192 (25%)
Query: 127 PKYKVAVLASKQE---HCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERH--- 180
P+ +VAVL S + L+D + +G + EI VISN + LER
Sbjct: 1154 PRKRVAVLISGKGSNLQALIDAIRDSAQG-VYAEIVLVISNKAG------VLGLERAAKA 1206
Query: 181 GIPYHYLCAKE-NEREEELLELVQN-----TDFLVLARYMQPVPLQKEAYLGYKLLESLS 234
GIP + K+ RE +EL ++ +F+ LA +M+
Sbjct: 1207 GIPSMVISHKDFPSREVYDVELTRHLKTARVEFICLAGFMR------------------- 1247
Query: 235 SKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFV 294
ILS F+R + +INIH LLP F G KQA +AG G T H+V
Sbjct: 1248 -----------ILSVPFVREWRGRLINIHPSLLPKFPGLHVQKQALEAGETESGCTVHYV 1296
Query: 295 TEELDAGPIIEQ 306
E +D G II Q
Sbjct: 1297 DEGVDTGAIIVQ 1308
>sp|Q9K9Y6|FMT_BACHD Methionyl-tRNA formyltransferase OS=Bacillus halodurans (strain
ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)
GN=fmt PE=3 SV=1
Length = 317
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 48/94 (51%), Gaps = 2/94 (2%)
Query: 214 MQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGG 273
+QP ++ EA L + L S +T+ F IL L IN+H LLP ++GG
Sbjct: 60 LQPEKIRDEAEL--ERLFSFEPDLIVTAAFGQILPNALLEYPKHGCINVHASLLPKYRGG 117
Query: 274 KPAKQAFDAGVKLIGATSHFVTEELDAGPIIEQM 307
P QA G K G T ++ E+LDAG I+ Q+
Sbjct: 118 APIHQAIIDGEKETGITIMYMAEKLDAGDILTQV 151
>sp|B9DPM5|FMT_STACT Methionyl-tRNA formyltransferase OS=Staphylococcus carnosus (strain
TM300) GN=fmt PE=3 SV=1
Length = 310
Score = 52.0 bits (123), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 59/128 (46%), Gaps = 16/128 (12%)
Query: 195 EEELLELVQNTDFLV-LARYMQPVPLQK-------EAYLGYKLLES--------LSSKGS 238
EE+++ +V D V R M P P+++ E Y K+ +S +
Sbjct: 23 EEDVIAVVTQPDRPVGRKRVMTPPPVKEVALENGIEVYQPEKISQSDDLQTLIDMEPDLI 82
Query: 239 LTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEEL 298
+T+ F IL L + IN+H LLP ++GG P QA G K G T ++ +L
Sbjct: 83 VTAAFGQILPKSLLDAPKLGAINVHASLLPKYRGGAPIHQAIIDGEKETGVTIMYMAPKL 142
Query: 299 DAGPIIEQ 306
DAG II Q
Sbjct: 143 DAGDIISQ 150
>sp|B5YIL6|FMT_THEYD Methionyl-tRNA formyltransferase OS=Thermodesulfovibrio
yellowstonii (strain ATCC 51303 / DSM 11347 / YP87)
GN=fmt PE=3 SV=1
Length = 308
Score = 51.6 bits (122), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 49/92 (53%), Gaps = 2/92 (2%)
Query: 215 QPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGK 274
QP ++ + ++ K L+SL+ + ++ + IL + L IN+H LLP ++G
Sbjct: 63 QPEKMKDDNFI--KKLKSLNPEFAIVVAYGKILPKEILEIPKHGCINLHASLLPKYRGAA 120
Query: 275 PAKQAFDAGVKLIGATSHFVTEELDAGPIIEQ 306
P + A G K+ G T+ + E LD GPI+ Q
Sbjct: 121 PIQWALINGEKITGVTTMIIDEGLDTGPILLQ 152
>sp|Q5HPX5|FMT_STAEQ Methionyl-tRNA formyltransferase OS=Staphylococcus epidermidis
(strain ATCC 35984 / RP62A) GN=fmt PE=3 SV=1
Length = 310
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 42/78 (53%)
Query: 229 LLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIG 288
+L SL S +T+ F +L L + IN+H LLP ++GG P QA G + G
Sbjct: 73 VLLSLESDLIVTAAFGQLLPESLLNAPKLGAINVHASLLPKYRGGAPIHQAIIDGEEETG 132
Query: 289 ATSHFVTEELDAGPIIEQ 306
T ++ ++LDAG II Q
Sbjct: 133 ITIMYMVKKLDAGNIISQ 150
>sp|P71554|PUR3_MYCTU Phosphoribosylglycinamide formyltransferase OS=Mycobacterium
tuberculosis GN=purN PE=1 SV=2
Length = 215
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Query: 239 LTSYFNMILSGKFL-RSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEE 297
+++ F IL +FL R YG+ +N H LLP+F G A GVK+ GAT H V
Sbjct: 94 VSAGFMRILGPQFLSRFYGR-TLNTHPALLPAFPGTHGVADALAYGVKVTGATVHLVDAG 152
Query: 298 LDAGPIIEQ 306
D GPI+ Q
Sbjct: 153 TDTGPILAQ 161
>sp|B2S3Z5|FMT_TREPS Methionyl-tRNA formyltransferase OS=Treponema pallidum subsp.
pallidum (strain SS14) GN=fmt PE=3 SV=1
Length = 319
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 40/80 (50%)
Query: 227 YKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKL 286
Y +E+L + + I +FL + + IN+H LLP ++G P A AG
Sbjct: 78 YDAVEALRPDVLVCFAYGKIFGPRFLALFPRGAINVHPSLLPRWRGSTPVPAAILAGDCE 137
Query: 287 IGATSHFVTEELDAGPIIEQ 306
G T ++ EE+DAG I+ Q
Sbjct: 138 TGVTLQYIGEEMDAGDILAQ 157
>sp|O83737|FMT_TREPA Methionyl-tRNA formyltransferase OS=Treponema pallidum (strain
Nichols) GN=fmt PE=3 SV=1
Length = 319
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 40/80 (50%)
Query: 227 YKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKL 286
Y +E+L + + I +FL + + IN+H LLP ++G P A AG
Sbjct: 78 YDAVEALRPDVLVCFAYGKIFGPRFLALFPRGAINVHPSLLPRWRGSTPVPAAILAGDCE 137
Query: 287 IGATSHFVTEELDAGPIIEQ 306
G T ++ EE+DAG I+ Q
Sbjct: 138 TGVTLQYIGEEMDAGDILAQ 157
>sp|Q92AI5|FMT_LISIN Methionyl-tRNA formyltransferase OS=Listeria innocua serovar 6a
(strain CLIP 11262) GN=fmt PE=3 SV=1
Length = 312
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 50/110 (45%), Gaps = 15/110 (13%)
Query: 212 RYMQPVPLQKEA-------YLGYKL--------LESLSSKGSLTSYFNMILSGKFLRSYG 256
R + P P++K A Y KL L SL + +T+ + IL L S
Sbjct: 41 RILTPPPVKKAALELGIPVYQPEKLRTSSELEELISLEADLLVTAAYGQILPNTLLESPK 100
Query: 257 KDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGPIIEQ 306
IN+H LLP ++GG P A G G T ++ E+LDAG +I Q
Sbjct: 101 HGAINVHASLLPEYRGGAPVHYALLDGKTETGVTIMYMVEKLDAGDMISQ 150
>sp|O67890|FMT_AQUAE Methionyl-tRNA formyltransferase OS=Aquifex aeolicus (strain VF5)
GN=fmt PE=3 SV=1
Length = 303
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 39/78 (50%)
Query: 229 LLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIG 288
L+E L + + IL + L IN+H LLP ++G P ++A AG K G
Sbjct: 71 LVEELKPDCIVVVAYGKILPKEVLDLPPYKTINLHASLLPKYRGAAPIQRAIMAGEKETG 130
Query: 289 ATSHFVTEELDAGPIIEQ 306
T V EE+DAG I+ Q
Sbjct: 131 NTVMLVNEEMDAGDILAQ 148
>sp|A1A0U2|FMT_BIFAA Methionyl-tRNA formyltransferase OS=Bifidobacterium adolescentis
(strain ATCC 15703 / DSM 20083 / NCTC 11814 / E194a)
GN=fmt PE=3 SV=1
Length = 320
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 70/155 (45%), Gaps = 15/155 (9%)
Query: 181 GIPYHYLCAKENEREEELLELVQNTDFLVLARYMQPVPLQKEAY-LGYKLLESLSSKGSL 239
+P L A++ E E + L + R + P+++ A LG ++ES S+ +
Sbjct: 13 AVPSLKLLAQDTEHFEVVAVLTRPDAPTGRGRKLVANPVKQAALELGLPVIESDPSEETF 72
Query: 240 TS-------------YFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKL 286
S + IL L + N+H LLP ++G P +++ AG K+
Sbjct: 73 VSELAATGAQAAAVVAYGKILKQDVLDALPMGWYNLHFSLLPQWRGAAPVQRSIWAGEKV 132
Query: 287 IGATSHFVTEELDAGPIIEQ-MLELLAISFATELM 320
GAT + +DAGPI+ Q +E+ A A EL+
Sbjct: 133 TGATVFRIVRAMDAGPILAQSTVEIGAHETAGELL 167
>sp|B8DDS9|FMT_LISMH Methionyl-tRNA formyltransferase OS=Listeria monocytogenes serotype
4a (strain HCC23) GN=fmt PE=3 SV=1
Length = 312
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 35/68 (51%)
Query: 239 LTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEEL 298
+T+ + IL L S IN+H LLP ++GG P A G G T ++ E+L
Sbjct: 83 VTAAYGQILPNSLLESPKHGAINVHASLLPEYRGGAPVHYALLDGKTETGVTIMYMVEKL 142
Query: 299 DAGPIIEQ 306
DAG +I Q
Sbjct: 143 DAGDMISQ 150
>sp|Q71YJ3|FMT_LISMF Methionyl-tRNA formyltransferase OS=Listeria monocytogenes serotype
4b (strain F2365) GN=fmt PE=3 SV=1
Length = 312
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 35/68 (51%)
Query: 239 LTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEEL 298
+T+ + IL L S IN+H LLP ++GG P A G G T ++ E+L
Sbjct: 83 VTAAYGQILPNSLLESPKHGAINVHASLLPEYRGGAPVHYALLDGKTETGVTIMYMVEKL 142
Query: 299 DAGPIIEQ 306
DAG +I Q
Sbjct: 143 DAGDMISQ 150
>sp|C1KWC2|FMT_LISMC Methionyl-tRNA formyltransferase OS=Listeria monocytogenes serotype
4b (strain CLIP80459) GN=fmt PE=3 SV=1
Length = 312
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 35/68 (51%)
Query: 239 LTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEEL 298
+T+ + IL L S IN+H LLP ++GG P A G G T ++ E+L
Sbjct: 83 VTAAYGQILPNSLLESPKHGAINVHASLLPEYRGGAPVHYALLDGKTETGVTIMYMVEKL 142
Query: 299 DAGPIIEQ 306
DAG +I Q
Sbjct: 143 DAGDMISQ 150
>sp|A0AJS8|FMT_LISW6 Methionyl-tRNA formyltransferase OS=Listeria welshimeri serovar 6b
(strain ATCC 35897 / DSM 20650 / SLCC5334) GN=fmt PE=3
SV=1
Length = 312
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 35/68 (51%)
Query: 239 LTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEEL 298
+T+ + IL L S IN+H LLP ++GG P A G G T ++ E+L
Sbjct: 83 VTAAYGQILPNSLLESPKHGAINVHASLLPEYRGGAPVHYALLDGKTETGVTIMYMVEKL 142
Query: 299 DAGPIIEQ 306
DAG +I Q
Sbjct: 143 DAGDMISQ 150
>sp|Q8Y676|FMT_LISMO Methionyl-tRNA formyltransferase OS=Listeria monocytogenes serovar
1/2a (strain ATCC BAA-679 / EGD-e) GN=fmt PE=3 SV=1
Length = 312
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 35/68 (51%)
Query: 239 LTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEEL 298
+T+ + IL L S IN+H LLP ++GG P A G G T ++ E+L
Sbjct: 83 VTAAYGQILPNSLLESPKHGAINVHASLLPEYRGGAPVHYALLDGKTETGVTIMYMVEKL 142
Query: 299 DAGPIIEQ 306
DAG +I Q
Sbjct: 143 DAGDMISQ 150
>sp|Q26255|PUR2_CHITE Trifunctional purine biosynthetic protein adenosine-3 OS=Chironomus
tentans GN=GART PE=3 SV=1
Length = 1371
Score = 49.3 bits (116), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 35/64 (54%)
Query: 243 FNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGP 302
F IL+ F+ + ++NIH LLP +KG K A ++G G T HFV E +D G
Sbjct: 1259 FMRILTPCFVNKWKGKLLNIHPSLLPKYKGITAQKDALESGDNESGCTVHFVDENVDTGA 1318
Query: 303 IIEQ 306
II Q
Sbjct: 1319 IIVQ 1322
>sp|Q8ER25|FMT_OCEIH Methionyl-tRNA formyltransferase OS=Oceanobacillus iheyensis
(strain DSM 14371 / JCM 11309 / KCTC 3954 / HTE831)
GN=fmt PE=3 SV=1
Length = 313
Score = 49.3 bits (116), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 41/81 (50%)
Query: 227 YKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKL 286
YK + L +T+ + IL + L IN+H LLP +GG P A G ++
Sbjct: 70 YKKITDLKPDLIVTAAYGQILPKEILEIPTFGCINVHASLLPELRGGAPIHYAIMQGKEV 129
Query: 287 IGATSHFVTEELDAGPIIEQM 307
G T ++ E+LDAG I+ Q+
Sbjct: 130 TGVTIMYMAEKLDAGDILTQV 150
>sp|Q049P0|FMT_LACDB Methionyl-tRNA formyltransferase OS=Lactobacillus delbrueckii
subsp. bulgaricus (strain ATCC BAA-365) GN=fmt PE=3 SV=1
Length = 315
Score = 49.3 bits (116), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 48/92 (52%), Gaps = 2/92 (2%)
Query: 215 QPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGK 274
QPV L K L +LL+ L + +T+ F L KFL+S +N+H LLP ++GG
Sbjct: 62 QPVRLSKSDELD-ELLQ-LDADFIITAAFGQFLPTKFLKSAKIAAVNVHGSLLPKYRGGA 119
Query: 275 PAKQAFDAGVKLIGATSHFVTEELDAGPIIEQ 306
P + A G G T + +E+DAG + Q
Sbjct: 120 PIQYAVRNGDAETGVTIMEMVKEMDAGDMYAQ 151
>sp|B9KBC2|FMT_THENN Methionyl-tRNA formyltransferase OS=Thermotoga neapolitana (strain
ATCC 49049 / DSM 4359 / NS-E) GN=fmt PE=3 SV=1
Length = 313
Score = 49.3 bits (116), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 48/93 (51%), Gaps = 2/93 (2%)
Query: 214 MQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGG 273
+QP + ++ L + L S++ + + + IL K L NIH LLP ++G
Sbjct: 60 IQPESINRKEAL--EFLHSVNPDVLIVASYGKILGEKVLSLPKHGCYNIHPSLLPKYRGA 117
Query: 274 KPAKQAFDAGVKLIGATSHFVTEELDAGPIIEQ 306
P ++A + G K G T + + +ELDAGPI Q
Sbjct: 118 SPIQRALENGEKKTGVTIYRMVKELDAGPIALQ 150
>sp|Q8CSW1|FMT_STAES Methionyl-tRNA formyltransferase OS=Staphylococcus epidermidis
(strain ATCC 12228) GN=fmt PE=3 SV=1
Length = 310
Score = 48.9 bits (115), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 37/68 (54%)
Query: 239 LTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEEL 298
+T+ F +L L + IN+H LLP ++GG P QA G + G T ++ ++L
Sbjct: 83 VTAAFGQLLPESLLNAPKLGAINVHASLLPKYRGGAPIHQAIIDGEEETGITIMYMVKKL 142
Query: 299 DAGPIIEQ 306
DAG II Q
Sbjct: 143 DAGNIISQ 150
>sp|A6LJK9|FMT_THEM4 Methionyl-tRNA formyltransferase OS=Thermosipho melanesiensis
(strain BI429 / DSM 12029) GN=fmt PE=3 SV=1
Length = 303
Score = 48.5 bits (114), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 45/89 (50%), Gaps = 5/89 (5%)
Query: 215 QPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGK 274
QP L KE G K++E+L + + +L FL + + N+H LLPS++G
Sbjct: 61 QPKKLNKE---GLKIIENLKPDIGIVVAYGKLLKPPFLNTL--EFYNVHASLLPSYRGAA 115
Query: 275 PAKQAFDAGVKLIGATSHFVTEELDAGPI 303
P ++ + G K G T + E +D GPI
Sbjct: 116 PIQRVLENGEKRTGITIFKIGEGMDDGPI 144
>sp|A8Z3Q2|FMT_STAAT Methionyl-tRNA formyltransferase OS=Staphylococcus aureus (strain
USA300 / TCH1516) GN=fmt PE=3 SV=1
Length = 311
Score = 48.5 bits (114), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 50/111 (45%), Gaps = 17/111 (15%)
Query: 212 RYMQPVPLQKEAYLGYKLL----ESLSSKGSL------------TSYFNMILSGKFLRSY 255
R M P P++K A + Y L E LS L T+ F +L L
Sbjct: 41 RVMTPPPVKKVA-MKYDLPVYQPEKLSGSEELEQLLQLDVDLIVTAAFGQLLPESLLALP 99
Query: 256 GKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGPIIEQ 306
IN+H LLP ++GG P QA G + G T ++ ++LDAG II Q
Sbjct: 100 NLGAINVHASLLPKYRGGAPIHQAIIDGEQETGITIMYMVKKLDAGNIISQ 150
>sp|A6QGB6|FMT_STAAE Methionyl-tRNA formyltransferase OS=Staphylococcus aureus (strain
Newman) GN=fmt PE=3 SV=1
Length = 311
Score = 48.5 bits (114), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 50/111 (45%), Gaps = 17/111 (15%)
Query: 212 RYMQPVPLQKEAYLGYKLL----ESLSSKGSL------------TSYFNMILSGKFLRSY 255
R M P P++K A + Y L E LS L T+ F +L L
Sbjct: 41 RVMTPPPVKKVA-MKYDLPVYQPEKLSGSEELEQLLQLDVDLIVTAAFGQLLPESLLALP 99
Query: 256 GKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGPIIEQ 306
IN+H LLP ++GG P QA G + G T ++ ++LDAG II Q
Sbjct: 100 NLGAINVHASLLPKYRGGAPIHQAIIDGEQETGITIMYMVKKLDAGNIISQ 150
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.138 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 118,984,010
Number of Sequences: 539616
Number of extensions: 5103523
Number of successful extensions: 13163
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 680
Number of HSP's successfully gapped in prelim test: 57
Number of HSP's that attempted gapping in prelim test: 12444
Number of HSP's gapped (non-prelim): 755
length of query: 321
length of database: 191,569,459
effective HSP length: 117
effective length of query: 204
effective length of database: 128,434,387
effective search space: 26200614948
effective search space used: 26200614948
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)