Query 020794
Match_columns 321
No_of_seqs 273 out of 2312
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 05:12:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020794.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020794hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0788 PurU Formyltetrahydrof 100.0 6.4E-66 1.4E-70 479.3 27.3 247 36-320 1-252 (287)
2 TIGR00655 PurU formyltetrahydr 100.0 2.1E-65 4.5E-70 485.1 31.0 240 43-320 1-246 (280)
3 PRK13010 purU formyltetrahydro 100.0 2.4E-64 5.2E-69 479.7 30.6 245 38-320 5-255 (289)
4 PRK13011 formyltetrahydrofolat 100.0 1.2E-61 2.6E-66 460.6 31.6 246 36-320 1-251 (286)
5 PRK06027 purU formyltetrahydro 100.0 2.3E-61 5E-66 458.5 31.3 244 39-320 3-251 (286)
6 PLN02828 formyltetrahydrofolat 100.0 3.2E-61 7E-66 453.6 28.8 232 59-320 1-233 (268)
7 COG0299 PurN Folate-dependent 100.0 3.8E-44 8.2E-49 322.0 18.3 159 129-320 1-165 (200)
8 TIGR00639 PurN phosphoribosylg 100.0 7.5E-41 1.6E-45 301.3 20.5 159 129-320 1-165 (190)
9 PLN02331 phosphoribosylglycina 100.0 2.3E-40 5E-45 302.0 20.4 158 130-320 1-169 (207)
10 PRK05647 purN phosphoribosylgl 100.0 9.1E-40 2E-44 296.3 19.3 160 128-320 1-166 (200)
11 KOG3076 5'-phosphoribosylglyci 100.0 2.1E-39 4.5E-44 289.0 16.8 161 127-320 5-173 (206)
12 PLN02285 methionyl-tRNA formyl 100.0 7.7E-38 1.7E-42 303.2 18.3 166 125-320 3-179 (334)
13 PF00551 Formyl_trans_N: Formy 100.0 4.1E-37 8.8E-42 273.4 17.2 159 129-320 1-165 (181)
14 COG0223 Fmt Methionyl-tRNA for 100.0 6.4E-35 1.4E-39 279.4 16.2 154 128-320 1-165 (307)
15 PRK06988 putative formyltransf 100.0 8.9E-34 1.9E-38 272.3 17.6 154 128-320 2-163 (312)
16 TIGR00460 fmt methionyl-tRNA f 100.0 2.5E-33 5.3E-38 269.1 17.7 153 129-320 1-164 (313)
17 PRK00005 fmt methionyl-tRNA fo 100.0 2.7E-33 5.8E-38 268.2 17.2 153 129-320 1-164 (309)
18 PRK08125 bifunctional UDP-gluc 100.0 1E-30 2.2E-35 271.9 18.1 153 129-320 1-161 (660)
19 PRK07579 hypothetical protein; 100.0 2.6E-29 5.7E-34 234.3 15.7 145 128-320 1-148 (245)
20 KOG3082 Methionyl-tRNA formylt 99.8 6.8E-20 1.5E-24 174.1 7.6 152 128-320 6-168 (338)
21 cd04893 ACT_GcvR_1 ACT domains 99.8 3.6E-18 7.8E-23 132.5 9.2 70 42-115 1-70 (77)
22 COG3830 ACT domain-containing 99.7 7.5E-18 1.6E-22 134.9 5.9 75 40-116 1-75 (90)
23 KOG2452 Formyltetrahydrofolate 99.7 6.3E-17 1.4E-21 161.3 6.6 157 129-320 1-163 (881)
24 cd04875 ACT_F4HF-DF N-terminal 99.6 8.4E-16 1.8E-20 117.5 9.6 72 44-115 1-72 (74)
25 cd04872 ACT_1ZPV ACT domain pr 99.6 2.4E-15 5.1E-20 118.9 9.1 72 42-115 1-72 (88)
26 PF13740 ACT_6: ACT domain; PD 99.6 2.7E-15 5.9E-20 116.0 7.0 71 41-115 1-71 (76)
27 cd04870 ACT_PSP_1 CT domains f 99.6 7E-15 1.5E-19 113.0 8.4 69 44-115 1-69 (75)
28 PRK00194 hypothetical protein; 99.6 4E-15 8.6E-20 117.6 6.9 74 41-116 2-75 (90)
29 PRK11589 gcvR glycine cleavage 99.5 3.7E-14 8.1E-19 128.3 11.8 98 38-140 4-107 (190)
30 cd04869 ACT_GcvR_2 ACT domains 99.5 7E-14 1.5E-18 107.6 9.3 71 44-115 1-75 (81)
31 PRK11589 gcvR glycine cleavage 99.1 4.5E-10 9.7E-15 101.8 8.6 74 42-116 95-172 (190)
32 cd04871 ACT_PSP_2 ACT domains 99.0 5.2E-10 1.1E-14 88.6 4.1 69 44-116 1-79 (84)
33 PF01842 ACT: ACT domain; Int 98.6 8.4E-08 1.8E-12 69.9 6.6 65 43-110 1-65 (66)
34 COG2716 GcvR Glycine cleavage 98.5 3E-07 6.5E-12 82.1 8.2 71 41-115 4-74 (176)
35 cd04925 ACT_ACR_2 ACT domain-c 98.3 4.1E-06 9E-11 64.4 7.8 46 44-91 2-47 (74)
36 COG2716 GcvR Glycine cleavage 98.1 4.6E-06 1E-10 74.5 6.3 105 3-115 57-168 (176)
37 PF13291 ACT_4: ACT domain; PD 98.1 2E-05 4.3E-10 60.7 8.2 68 39-110 3-70 (80)
38 cd04873 ACT_UUR-ACR-like ACT d 98.0 6.2E-05 1.3E-09 55.3 8.5 49 44-94 2-50 (70)
39 PRK08577 hypothetical protein; 97.9 7.1E-05 1.5E-09 63.9 9.3 76 34-109 48-123 (136)
40 CHL00100 ilvH acetohydroxyacid 97.8 4.9E-05 1.1E-09 68.3 7.3 73 41-115 1-73 (174)
41 PRK04435 hypothetical protein; 97.8 8.6E-05 1.9E-09 64.7 8.4 57 37-94 64-120 (147)
42 cd04888 ACT_PheB-BS C-terminal 97.8 8E-05 1.7E-09 56.0 7.0 50 44-94 2-51 (76)
43 cd04899 ACT_ACR-UUR-like_2 C-t 97.7 0.00031 6.7E-09 52.1 9.2 48 44-93 2-49 (70)
44 cd04886 ACT_ThrD-II-like C-ter 97.7 0.00028 6.1E-09 51.4 8.7 61 45-109 1-64 (73)
45 cd04874 ACT_Af1403 N-terminal 97.7 0.00023 5E-09 52.0 7.5 61 44-108 2-62 (72)
46 cd04887 ACT_MalLac-Enz ACT_Mal 97.7 0.0004 8.8E-09 52.1 8.8 62 45-111 2-63 (74)
47 cd04902 ACT_3PGDH-xct C-termin 97.6 0.00015 3.3E-09 53.8 6.3 60 45-108 2-61 (73)
48 cd04909 ACT_PDH-BS C-terminal 97.6 0.00028 6E-09 52.5 6.9 35 43-77 2-36 (69)
49 PRK03381 PII uridylyl-transfer 97.6 0.0016 3.5E-08 70.4 15.4 69 40-110 597-666 (774)
50 cd04881 ACT_HSDH-Hom ACT_HSDH_ 97.5 0.00064 1.4E-08 50.3 8.5 64 44-111 2-65 (79)
51 cd04928 ACT_TyrKc Uncharacteri 97.5 0.00086 1.9E-08 51.6 9.1 64 43-108 2-65 (68)
52 cd04878 ACT_AHAS N-terminal AC 97.5 0.0004 8.6E-09 50.5 6.6 48 45-92 3-50 (72)
53 cd04876 ACT_RelA-SpoT ACT dom 97.4 0.00048 1E-08 48.3 6.1 49 45-94 1-49 (71)
54 cd04879 ACT_3PGDH-like ACT_3PG 97.4 0.00094 2E-08 48.2 7.6 60 45-108 2-61 (71)
55 cd04927 ACT_ACR-like_2 Second 97.4 0.0019 4.1E-08 50.0 9.6 35 43-77 1-35 (76)
56 cd04900 ACT_UUR-like_1 ACT dom 97.3 0.0027 5.8E-08 48.3 9.0 34 44-77 3-36 (73)
57 cd04903 ACT_LSD C-terminal ACT 97.2 0.0018 4E-08 46.9 7.3 60 45-108 2-61 (71)
58 PRK06737 acetolactate synthase 97.2 0.0015 3.1E-08 51.4 6.8 66 41-108 1-66 (76)
59 cd04877 ACT_TyrR N-terminal AC 97.1 0.0028 6.2E-08 48.2 7.8 57 45-110 3-59 (74)
60 cd04889 ACT_PDH-BS-like C-term 97.1 0.0014 3.1E-08 46.9 5.8 46 45-91 1-46 (56)
61 cd04901 ACT_3PGDH C-terminal A 97.1 0.00088 1.9E-08 49.3 4.4 57 45-107 2-58 (69)
62 cd04883 ACT_AcuB C-terminal AC 97.1 0.0056 1.2E-07 45.5 8.8 61 44-108 3-63 (72)
63 cd04897 ACT_ACR_3 ACT domain-c 97.0 0.0013 2.8E-08 51.5 5.3 44 43-86 2-47 (75)
64 cd04884 ACT_CBS C-terminal ACT 97.0 0.0038 8.2E-08 47.0 7.5 33 45-77 2-34 (72)
65 cd02116 ACT ACT domains are co 97.0 0.0045 9.8E-08 40.9 6.9 34 45-78 1-34 (60)
66 PRK11895 ilvH acetolactate syn 97.0 0.0031 6.7E-08 56.1 7.6 67 41-109 1-67 (161)
67 cd04926 ACT_ACR_4 C-terminal 96.9 0.0077 1.7E-07 45.8 8.7 34 44-77 3-36 (72)
68 cd04895 ACT_ACR_1 ACT domain-c 96.9 0.0051 1.1E-07 47.8 7.3 34 43-76 2-35 (72)
69 PRK11152 ilvM acetolactate syn 96.9 0.0059 1.3E-07 47.9 7.6 67 40-109 1-67 (76)
70 cd04882 ACT_Bt0572_2 C-termina 96.8 0.005 1.1E-07 44.5 6.7 58 44-107 1-58 (65)
71 cd04908 ACT_Bt0572_1 N-termina 96.8 0.0088 1.9E-07 44.4 7.9 57 44-108 3-59 (66)
72 cd04905 ACT_CM-PDT C-terminal 96.7 0.012 2.6E-07 45.3 8.2 64 45-111 4-68 (80)
73 cd04880 ACT_AAAH-PDT-like ACT 96.7 0.0097 2.1E-07 45.1 7.5 31 46-76 3-33 (75)
74 TIGR00119 acolac_sm acetolacta 96.7 0.0068 1.5E-07 53.7 7.5 66 42-109 1-66 (157)
75 PRK13562 acetolactate synthase 96.7 0.0068 1.5E-07 48.6 6.7 51 41-91 1-51 (84)
76 TIGR01693 UTase_glnD [Protein- 96.5 0.0045 9.8E-08 67.4 6.7 57 36-92 773-831 (850)
77 cd04894 ACT_ACR-like_1 ACT dom 96.4 0.016 3.5E-07 44.2 7.0 63 44-109 2-67 (69)
78 PRK08178 acetolactate synthase 96.2 0.022 4.7E-07 46.8 7.4 66 40-108 6-71 (96)
79 TIGR00719 sda_beta L-serine de 96.0 0.028 6E-07 51.6 7.9 65 24-92 134-198 (208)
80 cd04896 ACT_ACR-like_3 ACT dom 96.0 0.071 1.5E-06 41.8 8.9 42 44-85 2-47 (75)
81 PF13840 ACT_7: ACT domain ; P 95.9 0.032 6.9E-07 41.9 6.6 33 42-74 6-42 (65)
82 PRK07334 threonine dehydratase 95.8 0.06 1.3E-06 53.8 9.9 67 40-110 324-393 (403)
83 PRK10872 relA (p)ppGpp synthet 95.6 0.071 1.5E-06 57.7 10.1 71 40-114 664-734 (743)
84 PF13710 ACT_5: ACT domain; PD 95.6 0.043 9.2E-07 41.2 6.1 57 51-109 1-57 (63)
85 COG4492 PheB ACT domain-contai 95.6 0.052 1.1E-06 47.2 7.2 65 42-107 72-136 (150)
86 PRK05092 PII uridylyl-transfer 95.5 0.041 8.8E-07 60.8 8.0 73 36-110 726-804 (931)
87 cd04885 ACT_ThrD-I Tandem C-te 95.3 0.069 1.5E-06 40.0 6.4 30 46-76 2-31 (68)
88 TIGR00691 spoT_relA (p)ppGpp s 95.3 0.087 1.9E-06 56.5 9.5 68 40-112 608-675 (683)
89 PRK11092 bifunctional (p)ppGpp 95.3 0.1 2.2E-06 56.2 9.9 67 40-111 624-690 (702)
90 PF00185 OTCace: Aspartate/orn 94.9 0.15 3.3E-06 44.7 8.3 118 128-272 2-125 (158)
91 COG1707 ACT domain-containing 94.8 0.12 2.6E-06 46.8 7.4 62 44-109 4-66 (218)
92 cd04913 ACT_AKii-LysC-BS-like_ 94.8 0.18 3.9E-06 36.8 7.3 66 44-114 3-69 (75)
93 PRK03381 PII uridylyl-transfer 94.8 0.14 3.1E-06 55.6 9.4 41 38-78 703-743 (774)
94 PRK11790 D-3-phosphoglycerate 94.7 0.071 1.5E-06 53.7 6.4 65 39-109 335-399 (409)
95 cd04931 ACT_PAH ACT domain of 94.4 0.5 1.1E-05 38.1 9.6 67 45-115 17-84 (90)
96 COG0317 SpoT Guanosine polypho 94.2 0.28 6E-06 52.8 9.8 69 38-111 623-691 (701)
97 PRK05092 PII uridylyl-transfer 93.9 0.27 5.9E-06 54.5 9.4 38 40-77 841-878 (931)
98 TIGR01127 ilvA_1Cterm threonin 93.9 0.23 5E-06 49.0 8.0 39 38-76 301-339 (380)
99 PRK13581 D-3-phosphoglycerate 93.7 0.088 1.9E-06 54.6 4.9 64 25-92 439-502 (526)
100 TIGR01327 PGDH D-3-phosphoglyc 93.4 0.081 1.8E-06 54.9 4.2 64 25-92 438-501 (525)
101 PLN02342 ornithine carbamoyltr 93.4 0.5 1.1E-05 47.0 9.5 59 199-272 254-312 (348)
102 cd04892 ACT_AK-like_2 ACT doma 93.1 0.92 2E-05 31.7 8.1 34 44-77 2-38 (65)
103 cd04904 ACT_AAAH ACT domain of 93.0 0.37 8E-06 36.8 6.3 60 47-111 5-65 (74)
104 PRK09436 thrA bifunctional asp 93.0 1.2 2.7E-05 48.8 12.7 104 39-162 393-504 (819)
105 PRK03059 PII uridylyl-transfer 93.0 0.92 2E-05 50.0 11.6 41 37-77 781-821 (856)
106 PRK04374 PII uridylyl-transfer 92.9 0.23 5E-06 54.7 6.9 42 37-78 791-832 (869)
107 PRK08198 threonine dehydratase 92.7 0.29 6.2E-06 48.8 6.6 40 37-76 322-361 (404)
108 PRK04374 PII uridylyl-transfer 92.6 0.48 1E-05 52.3 8.7 46 37-83 685-730 (869)
109 PRK01759 glnD PII uridylyl-tra 92.5 0.72 1.6E-05 50.8 10.1 53 37-90 672-724 (854)
110 PRK05007 PII uridylyl-transfer 92.4 0.78 1.7E-05 50.7 10.1 46 38-84 697-742 (884)
111 COG0440 IlvH Acetolactate synt 92.1 1.5 3.3E-05 39.3 9.7 74 40-115 2-75 (163)
112 PRK08818 prephenate dehydrogen 92.0 0.71 1.5E-05 46.2 8.5 57 45-105 298-355 (370)
113 PRK05007 PII uridylyl-transfer 92.0 0.25 5.4E-06 54.5 5.7 49 38-86 804-854 (884)
114 cd04922 ACT_AKi-HSDH-ThrA_2 AC 91.9 1.9 4.1E-05 30.9 8.6 35 43-77 2-39 (66)
115 PRK04284 ornithine carbamoyltr 91.7 1.8 4E-05 42.6 10.9 31 242-274 250-281 (332)
116 PRK00275 glnD PII uridylyl-tra 91.6 0.96 2.1E-05 50.1 9.7 49 41-90 703-751 (895)
117 PRK06382 threonine dehydratase 91.5 0.69 1.5E-05 46.4 7.8 39 38-76 326-364 (406)
118 COG4747 ACT domain-containing 91.3 6.6 0.00014 33.9 12.3 121 44-185 5-134 (142)
119 PRK01759 glnD PII uridylyl-tra 91.2 0.31 6.8E-06 53.6 5.4 48 38-85 779-828 (854)
120 KOG2663 Acetolactate synthase, 91.0 0.33 7.1E-06 46.5 4.6 69 40-110 75-143 (309)
121 COG2150 Predicted regulator of 91.0 0.58 1.3E-05 41.9 5.9 57 35-91 86-144 (167)
122 PRK00275 glnD PII uridylyl-tra 91.0 1.1 2.3E-05 49.7 9.3 39 40-78 812-850 (895)
123 PRK10820 DNA-binding transcrip 90.7 0.51 1.1E-05 48.9 6.2 90 44-152 2-92 (520)
124 cd04930 ACT_TH ACT domain of t 90.6 2.6 5.6E-05 35.4 9.3 64 41-111 42-106 (115)
125 TIGR01693 UTase_glnD [Protein- 90.6 1.6 3.4E-05 48.0 10.1 42 40-82 666-707 (850)
126 cd04937 ACT_AKi-DapG-BS_2 ACT 90.5 2.3 5.1E-05 31.1 8.0 58 43-113 2-62 (64)
127 PRK06545 prephenate dehydrogen 90.4 0.66 1.4E-05 45.6 6.4 52 41-94 289-340 (359)
128 PRK03059 PII uridylyl-transfer 90.3 1.7 3.8E-05 47.9 10.2 46 37-83 673-718 (856)
129 cd04919 ACT_AK-Hom3_2 ACT doma 90.3 2.7 5.9E-05 30.3 8.2 35 43-77 2-39 (66)
130 cd04924 ACT_AK-Arch_2 ACT doma 90.0 2.9 6.2E-05 29.9 8.0 60 43-113 2-64 (66)
131 cd04929 ACT_TPH ACT domain of 89.7 3.6 7.8E-05 31.8 8.7 58 49-111 7-65 (74)
132 PRK10696 tRNA 2-thiocytidine b 89.5 3.1 6.6E-05 39.1 9.8 79 101-188 11-94 (258)
133 cd04932 ACT_AKiii-LysC-EC_1 AC 89.4 2 4.3E-05 33.1 7.1 33 44-76 3-38 (75)
134 PRK01713 ornithine carbamoyltr 89.3 3.8 8.3E-05 40.4 10.7 29 243-273 252-281 (334)
135 cd04906 ACT_ThrD-I_1 First of 89.2 1.4 3.1E-05 34.4 6.3 31 44-76 3-33 (85)
136 cd04918 ACT_AK1-AT_2 ACT domai 89.1 4.1 9E-05 30.0 8.4 61 42-113 1-63 (65)
137 TIGR00670 asp_carb_tr aspartat 88.8 4.5 9.7E-05 39.4 10.7 27 243-273 241-267 (301)
138 PRK09466 metL bifunctional asp 88.8 6.1 0.00013 43.6 12.8 103 39-163 388-499 (810)
139 cd04912 ACT_AKiii-LysC-EC-like 88.1 2.8 6E-05 31.9 7.0 33 43-75 2-37 (75)
140 PRK08526 threonine dehydratase 87.7 1.8 4E-05 43.5 7.5 40 38-77 322-361 (403)
141 TIGR00658 orni_carb_tr ornithi 87.7 7.6 0.00016 37.7 11.5 29 242-272 241-269 (304)
142 PRK02255 putrescine carbamoylt 87.3 4.2 9.1E-05 40.2 9.6 28 243-272 249-277 (338)
143 PRK04523 N-acetylornithine car 87.2 8.5 0.00018 38.0 11.6 60 199-273 239-300 (335)
144 PRK11899 prephenate dehydratas 87.2 5.9 0.00013 38.2 10.3 64 43-111 197-261 (279)
145 PRK00779 ornithine carbamoyltr 87.1 7.4 0.00016 37.9 11.0 29 243-273 243-271 (304)
146 PRK13376 pyrB bifunctional asp 87.0 5.6 0.00012 41.8 10.8 29 243-273 271-299 (525)
147 cd04916 ACT_AKiii-YclM-BS_2 AC 86.8 6.8 0.00015 27.9 8.2 35 43-77 2-39 (66)
148 COG2102 Predicted ATPases of P 86.5 5.9 0.00013 37.3 9.5 80 129-211 1-93 (223)
149 PRK06349 homoserine dehydrogen 86.4 3.7 7.9E-05 41.6 8.9 68 39-111 345-412 (426)
150 PRK13814 pyrB aspartate carbam 85.6 3.8 8.2E-05 40.1 8.2 118 139-273 136-270 (310)
151 cd04868 ACT_AK-like ACT domain 85.3 1.9 4.2E-05 29.3 4.5 34 44-77 2-38 (60)
152 cd04915 ACT_AK-Ectoine_2 ACT d 84.6 9.9 0.00021 28.3 8.3 60 43-113 3-64 (66)
153 cd04936 ACT_AKii-LysC-BS-like_ 84.3 11 0.00023 26.4 8.2 33 44-76 2-37 (63)
154 PRK08192 aspartate carbamoyltr 84.2 19 0.00041 35.7 12.4 27 244-272 252-279 (338)
155 cd04891 ACT_AK-LysC-DapG-like_ 83.8 4 8.7E-05 28.1 5.6 28 50-77 9-36 (61)
156 TIGR01761 thiaz-red thiazoliny 83.6 2.2 4.8E-05 42.3 5.6 52 127-185 2-53 (343)
157 PLN02527 aspartate carbamoyltr 82.8 11 0.00024 36.7 10.1 24 243-266 244-267 (306)
158 cd04923 ACT_AK-LysC-DapG-like_ 82.5 14 0.00031 25.8 8.3 33 44-76 2-37 (63)
159 PRK14805 ornithine carbamoyltr 82.3 8.3 0.00018 37.5 9.0 56 202-273 212-267 (302)
160 PRK03515 ornithine carbamoyltr 82.2 12 0.00026 37.0 10.2 30 242-273 251-281 (336)
161 PRK06291 aspartate kinase; Pro 81.5 29 0.00064 35.5 13.0 84 42-137 321-407 (465)
162 cd04921 ACT_AKi-HSDH-ThrA-like 81.1 18 0.00038 27.1 8.7 34 43-76 2-38 (80)
163 TIGR00289 conserved hypothetic 81.0 14 0.00031 34.5 9.7 79 129-211 1-92 (222)
164 cd04935 ACT_AKiii-DAPDC_1 ACT 80.9 5.2 0.00011 30.7 5.7 27 49-75 11-37 (75)
165 PF01902 ATP_bind_4: ATP-bindi 80.8 7.4 0.00016 36.2 7.7 78 129-210 1-91 (218)
166 PRK10622 pheA bifunctional cho 80.3 12 0.00026 37.7 9.6 68 40-112 297-365 (386)
167 TIGR02079 THD1 threonine dehyd 79.8 7 0.00015 39.3 7.8 41 36-76 319-359 (409)
168 cd01994 Alpha_ANH_like_IV This 79.6 17 0.00036 33.0 9.5 55 130-188 1-65 (194)
169 cd04933 ACT_AK1-AT_1 ACT domai 79.5 9.1 0.0002 30.0 6.7 27 49-75 11-37 (78)
170 TIGR03316 ygeW probable carbam 79.4 39 0.00085 33.8 12.8 87 176-273 225-320 (357)
171 PF01408 GFO_IDH_MocA: Oxidore 79.3 4.6 9.9E-05 32.4 5.2 68 129-214 1-72 (120)
172 PRK08639 threonine dehydratase 79.3 7.3 0.00016 39.3 7.7 42 35-76 329-370 (420)
173 COG0077 PheA Prephenate dehydr 79.2 14 0.0003 35.9 9.2 70 37-111 191-261 (279)
174 COG1570 XseA Exonuclease VII, 79.1 64 0.0014 33.4 14.3 137 73-215 82-234 (440)
175 COG3978 Acetolactate synthase 78.9 15 0.00033 29.4 7.7 67 40-109 1-67 (86)
176 COG2844 GlnD UTP:GlnB (protein 78.9 3.4 7.4E-05 45.4 5.4 46 40-85 789-836 (867)
177 TIGR00290 MJ0570_dom MJ0570-re 78.7 15 0.00032 34.4 9.0 78 129-210 1-91 (223)
178 PRK06635 aspartate kinase; Rev 78.2 11 0.00024 37.4 8.6 35 41-75 339-376 (404)
179 COG2061 ACT-domain-containing 78.1 52 0.0011 29.6 12.5 114 39-160 2-118 (170)
180 COG0078 ArgF Ornithine carbamo 77.5 39 0.00085 33.3 11.8 119 127-272 152-275 (310)
181 PRK14804 ornithine carbamoyltr 77.3 13 0.00029 36.2 8.7 28 242-273 249-276 (311)
182 cd04920 ACT_AKiii-DAPDC_2 ACT 76.6 19 0.00041 26.4 7.4 57 44-113 2-61 (63)
183 PRK00856 pyrB aspartate carbam 75.8 16 0.00035 35.6 8.7 120 139-273 135-268 (305)
184 PRK08300 acetaldehyde dehydrog 75.6 13 0.00027 36.5 7.9 72 127-212 3-78 (302)
185 PRK06635 aspartate kinase; Rev 74.7 45 0.00096 33.1 11.8 36 43-78 263-299 (404)
186 PRK08841 aspartate kinase; Val 74.5 15 0.00032 37.1 8.3 63 40-115 316-378 (392)
187 PRK02102 ornithine carbamoyltr 74.1 25 0.00054 34.8 9.6 26 242-269 249-275 (331)
188 cd04890 ACT_AK-like_1 ACT doma 74.1 11 0.00025 26.9 5.6 31 45-75 3-36 (62)
189 COG2844 GlnD UTP:GlnB (protein 72.6 19 0.00042 39.8 9.1 41 41-82 683-723 (867)
190 PRK00227 glnD PII uridylyl-tra 72.4 30 0.00066 37.6 10.5 66 40-108 544-611 (693)
191 PRK12562 ornithine carbamoyltr 72.1 48 0.001 32.8 11.1 59 199-271 220-279 (334)
192 TIGR03215 ac_ald_DH_ac acetald 71.8 26 0.00057 33.9 9.0 70 128-212 1-72 (285)
193 PRK07200 aspartate/ornithine c 70.7 57 0.0012 33.2 11.5 29 241-271 305-334 (395)
194 PLN02551 aspartokinase 70.7 70 0.0015 33.6 12.5 86 42-137 366-454 (521)
195 PRK05447 1-deoxy-D-xylulose 5- 70.3 47 0.001 33.7 10.7 56 129-188 2-57 (385)
196 PRK06552 keto-hydroxyglutarate 70.1 89 0.0019 28.8 11.8 120 44-210 15-135 (213)
197 cd04934 ACT_AK-Hom3_1 CT domai 70.0 13 0.00028 28.5 5.3 25 52-76 14-38 (73)
198 PF01171 ATP_bind_3: PP-loop f 69.5 17 0.00038 31.9 6.8 58 130-188 1-65 (182)
199 COG0673 MviM Predicted dehydro 69.5 18 0.00039 34.2 7.4 72 127-212 2-75 (342)
200 TIGR00656 asp_kin_monofn aspar 69.2 24 0.00052 35.0 8.4 62 40-114 335-399 (401)
201 PLN02696 1-deoxy-D-xylulose-5- 68.3 24 0.00051 36.6 8.3 79 127-211 56-156 (454)
202 COG3603 Uncharacterized conser 68.2 7.2 0.00016 33.5 3.8 35 43-77 64-101 (128)
203 PF03054 tRNA_Me_trans: tRNA m 67.9 14 0.0003 37.0 6.4 118 129-254 1-163 (356)
204 COG3283 TyrR Transcriptional r 67.8 28 0.00061 35.7 8.4 89 45-152 3-92 (511)
205 PRK09181 aspartate kinase; Val 67.6 1E+02 0.0022 32.0 12.8 82 41-138 328-412 (475)
206 PF03807 F420_oxidored: NADP o 67.3 31 0.00068 26.5 7.1 71 130-215 1-72 (96)
207 PRK07431 aspartate kinase; Pro 67.0 52 0.0011 34.6 10.7 99 44-150 441-544 (587)
208 PLN02819 lysine-ketoglutarate 66.2 1.8E+02 0.0039 33.4 15.2 161 41-212 462-656 (1042)
209 PRK11898 prephenate dehydratas 65.9 37 0.00079 32.7 8.7 67 42-111 196-264 (283)
210 TIGR03590 PseG pseudaminic aci 65.8 38 0.00083 32.0 8.7 70 139-214 15-90 (279)
211 PRK09034 aspartate kinase; Rev 65.4 59 0.0013 33.3 10.5 32 43-74 309-343 (454)
212 PRK10660 tilS tRNA(Ile)-lysidi 65.0 25 0.00053 35.9 7.7 61 128-188 15-82 (436)
213 PRK08210 aspartate kinase I; R 64.9 33 0.00072 34.2 8.5 63 39-114 336-401 (403)
214 COG4569 MhpF Acetaldehyde dehy 64.1 25 0.00055 33.3 6.9 53 127-186 3-57 (310)
215 cd04917 ACT_AKiii-LysC-EC_2 AC 63.7 53 0.0011 23.6 7.8 58 43-113 2-62 (64)
216 PRK09436 thrA bifunctional asp 62.8 1.2E+02 0.0026 33.6 12.9 38 40-77 313-353 (819)
217 COG0313 Predicted methyltransf 62.7 23 0.00049 34.4 6.5 74 134-215 55-139 (275)
218 TIGR03759 conj_TIGR03759 integ 62.5 56 0.0012 30.3 8.7 59 127-188 108-166 (200)
219 PRK15385 magnesium transport p 62.5 78 0.0017 29.9 9.9 80 40-121 140-221 (225)
220 TIGR00237 xseA exodeoxyribonuc 62.0 1.9E+02 0.0041 29.5 15.8 145 65-215 65-228 (432)
221 PF10686 DUF2493: Protein of u 60.7 19 0.00041 27.7 4.6 59 128-189 3-65 (71)
222 cd01992 PP-ATPase N-terminal d 60.4 57 0.0012 28.1 8.3 57 130-187 1-64 (185)
223 PRK12483 threonine dehydratase 60.3 40 0.00086 35.4 8.3 40 36-77 339-378 (521)
224 TIGR00656 asp_kin_monofn aspar 59.3 1.9E+02 0.0041 28.6 12.7 35 42-76 260-297 (401)
225 PRK09181 aspartate kinase; Val 58.5 49 0.0011 34.3 8.6 64 40-114 400-465 (475)
226 PRK11891 aspartate carbamoyltr 58.2 85 0.0019 32.3 10.1 27 242-270 331-358 (429)
227 TIGR02432 lysidine_TilS_N tRNA 57.7 27 0.00057 30.5 5.7 58 130-188 1-65 (189)
228 PRK07431 aspartate kinase; Pro 57.0 51 0.0011 34.7 8.6 86 44-138 272-358 (587)
229 PRK06291 aspartate kinase; Pro 56.9 60 0.0013 33.3 8.8 64 40-114 396-462 (465)
230 cd04914 ACT_AKi-DapG-BS_1 ACT 56.5 28 0.00061 25.9 4.9 34 43-76 2-36 (67)
231 COG0482 TrmU Predicted tRNA(5- 56.0 36 0.00078 34.2 6.8 87 127-218 2-130 (356)
232 PRK09224 threonine dehydratase 56.0 46 0.00099 34.6 7.9 68 37-108 323-391 (504)
233 PRK14664 tRNA-specific 2-thiou 55.5 40 0.00086 33.8 7.1 57 127-188 4-62 (362)
234 PRK00143 mnmA tRNA-specific 2- 55.4 95 0.0021 30.6 9.7 55 129-188 1-70 (346)
235 TIGR01921 DAP-DH diaminopimela 55.3 75 0.0016 31.5 8.9 34 128-165 3-37 (324)
236 TIGR00657 asp_kinases aspartat 55.1 51 0.0011 33.3 8.0 37 39-75 375-414 (441)
237 PRK13600 putative ribosomal pr 55.0 20 0.00044 28.7 4.0 45 143-189 19-63 (84)
238 PRK00907 hypothetical protein; 54.9 90 0.002 25.4 7.8 66 42-111 17-84 (92)
239 PLN02317 arogenate dehydratase 54.6 68 0.0015 32.6 8.6 34 41-76 284-317 (382)
240 PLN02550 threonine dehydratase 54.2 42 0.00091 35.9 7.4 40 36-77 411-450 (591)
241 COG4747 ACT domain-containing 54.1 48 0.001 28.7 6.3 62 42-110 69-130 (142)
242 PLN02551 aspartokinase 53.7 67 0.0014 33.8 8.7 64 39-113 442-507 (521)
243 PRK14561 hypothetical protein; 53.6 28 0.00061 31.4 5.3 54 129-188 1-57 (194)
244 TIGR00512 salvage_mtnA S-methy 53.2 1.2E+02 0.0027 30.0 10.1 72 130-210 147-231 (331)
245 PRK09034 aspartate kinase; Rev 52.6 77 0.0017 32.4 8.8 66 37-113 380-448 (454)
246 PF10727 Rossmann-like: Rossma 52.1 21 0.00044 30.5 3.9 36 125-165 7-43 (127)
247 TIGR03693 ocin_ThiF_like putat 51.9 58 0.0013 35.2 7.9 78 127-213 128-213 (637)
248 PF00448 SRP54: SRP54-type pro 51.9 88 0.0019 28.2 8.2 84 130-215 2-94 (196)
249 COG3961 Pyruvate decarboxylase 51.3 44 0.00096 35.3 6.8 60 155-215 212-287 (557)
250 PRK10126 tyrosine phosphatase; 51.1 68 0.0015 27.4 7.1 81 128-214 2-85 (147)
251 PRK13304 L-aspartate dehydroge 50.9 65 0.0014 30.4 7.5 69 129-214 2-71 (265)
252 TIGR01124 ilvA_2Cterm threonin 50.9 40 0.00088 35.1 6.5 40 35-76 318-357 (499)
253 PRK14449 acylphosphatase; Prov 50.6 75 0.0016 25.3 6.7 58 102-163 18-75 (90)
254 COG0527 LysC Aspartokinases [A 50.4 1.7E+02 0.0037 30.2 10.9 86 40-138 305-393 (447)
255 PRK00286 xseA exodeoxyribonucl 50.2 2.9E+02 0.0062 27.9 14.6 145 65-215 71-233 (438)
256 PRK07634 pyrroline-5-carboxyla 50.0 55 0.0012 29.7 6.7 69 128-212 4-74 (245)
257 KOG2805 tRNA (5-methylaminomet 49.7 61 0.0013 32.5 7.1 57 127-188 4-74 (377)
258 TIGR00657 asp_kinases aspartat 49.2 2.6E+02 0.0057 28.2 12.0 38 40-77 300-339 (441)
259 COG0394 Wzb Protein-tyrosine-p 49.1 44 0.00095 28.8 5.5 79 128-214 2-86 (139)
260 PRK13602 putative ribosomal pr 49.0 31 0.00066 27.1 4.2 50 134-189 12-61 (82)
261 cd05017 SIS_PGI_PMI_1 The memb 48.9 93 0.002 25.3 7.3 55 128-190 43-99 (119)
262 PF02670 DXP_reductoisom: 1-de 48.8 99 0.0022 26.6 7.6 52 131-188 1-54 (129)
263 TIGR01268 Phe4hydrox_tetr phen 48.2 1.4E+02 0.003 31.0 9.7 65 41-111 17-82 (436)
264 PF00708 Acylphosphatase: Acyl 48.1 70 0.0015 25.1 6.2 58 102-163 19-76 (91)
265 PLN02891 IMP cyclohydrolase 47.6 27 0.00059 36.9 4.7 42 32-76 14-55 (547)
266 PRK08306 dipicolinate synthase 47.4 88 0.0019 30.1 7.9 66 127-211 151-217 (296)
267 TIGR01270 Trp_5_monoox tryptop 46.7 1.2E+02 0.0026 31.6 9.1 67 40-112 31-98 (464)
268 PRK06015 keto-hydroxyglutarate 46.5 2.4E+02 0.0052 26.0 12.0 112 49-210 11-123 (201)
269 PRK02047 hypothetical protein; 46.1 1.3E+02 0.0029 24.1 7.5 65 42-111 16-83 (91)
270 PF00205 TPP_enzyme_M: Thiamin 45.7 26 0.00056 29.1 3.5 44 171-214 29-87 (137)
271 PRK03868 glucose-6-phosphate i 45.5 76 0.0017 32.3 7.4 59 127-189 110-174 (410)
272 PRK00341 hypothetical protein; 45.2 1.5E+02 0.0032 23.9 7.7 65 42-111 17-83 (91)
273 PRK00726 murG undecaprenyldiph 45.1 1.6E+02 0.0034 28.0 9.2 79 129-214 2-101 (357)
274 TIGR01182 eda Entner-Doudoroff 44.8 2.6E+02 0.0055 25.8 12.1 115 46-210 12-127 (204)
275 PRK06683 hypothetical protein; 44.8 34 0.00073 27.0 3.8 50 134-189 12-61 (82)
276 PRK14423 acylphosphatase; Prov 44.4 85 0.0018 25.1 6.2 58 102-163 20-77 (92)
277 PF01081 Aldolase: KDPG and KH 44.3 2.5E+02 0.0055 25.7 11.8 117 44-210 10-127 (196)
278 PRK14422 acylphosphatase; Prov 44.0 1E+02 0.0022 24.8 6.5 58 102-163 21-78 (93)
279 PRK08210 aspartate kinase I; R 43.9 48 0.001 33.0 5.7 36 41-76 270-306 (403)
280 PRK13302 putative L-aspartate 43.4 1.2E+02 0.0026 28.7 8.1 71 127-213 5-76 (271)
281 PF10087 DUF2325: Uncharacteri 42.5 1.2E+02 0.0025 24.1 6.7 33 156-188 49-82 (97)
282 COG3007 Uncharacterized paraqu 42.4 1.9E+02 0.0042 28.9 9.3 97 123-221 36-150 (398)
283 TIGR00486 YbgI_SA1388 dinuclea 42.4 1.9E+02 0.0041 27.1 9.1 92 96-203 138-233 (249)
284 PRK14430 acylphosphatase; Prov 42.3 1E+02 0.0022 24.7 6.4 58 103-164 20-77 (92)
285 TIGR03646 YtoQ_fam YtoQ family 42.0 1.9E+02 0.0042 25.4 8.3 109 133-267 3-114 (144)
286 PRK14429 acylphosphatase; Prov 41.6 1.2E+02 0.0025 24.2 6.5 59 102-164 17-75 (90)
287 COG0345 ProC Pyrroline-5-carbo 41.5 1E+02 0.0022 29.7 7.2 71 128-214 1-72 (266)
288 PF01250 Ribosomal_S6: Ribosom 40.4 82 0.0018 24.6 5.5 53 52-107 18-79 (92)
289 cd01993 Alpha_ANH_like_II This 40.3 1E+02 0.0022 26.4 6.5 59 130-188 1-67 (185)
290 COG0037 MesJ tRNA(Ile)-lysidin 40.0 2.2E+02 0.0047 26.6 9.2 58 128-188 21-85 (298)
291 PRK13601 putative L7Ae-like ri 40.0 42 0.00091 26.6 3.7 49 134-188 9-57 (82)
292 PRK07114 keto-hydroxyglutarate 39.9 3.2E+02 0.0069 25.5 11.9 121 44-210 17-138 (222)
293 PRK00453 rpsF 30S ribosomal pr 39.9 1.8E+02 0.004 23.6 7.6 42 52-94 19-69 (108)
294 TIGR00243 Dxr 1-deoxy-D-xylulo 39.6 1.7E+02 0.0038 29.8 8.8 54 129-188 2-57 (389)
295 PRK14447 acylphosphatase; Prov 39.6 91 0.002 25.1 5.7 59 102-163 19-77 (95)
296 PRK14436 acylphosphatase; Prov 39.6 1.3E+02 0.0028 24.1 6.5 59 102-164 19-77 (91)
297 PRK14440 acylphosphatase; Prov 39.5 1.2E+02 0.0026 24.2 6.3 58 102-163 18-75 (90)
298 PRK08293 3-hydroxybutyryl-CoA 39.0 3E+02 0.0065 25.9 10.0 69 198-270 78-148 (287)
299 TIGR00511 ribulose_e2b2 ribose 38.6 1.8E+02 0.0039 28.3 8.5 54 133-188 119-173 (301)
300 PF05088 Bac_GDH: Bacterial NA 38.6 93 0.002 37.1 7.5 74 39-112 14-106 (1528)
301 TIGR01133 murG undecaprenyldip 38.4 1.4E+02 0.0029 28.0 7.6 53 129-188 1-56 (348)
302 PRK14665 mnmA tRNA-specific 2- 38.3 1.5E+02 0.0032 29.7 8.1 58 127-189 4-68 (360)
303 CHL00123 rps6 ribosomal protei 38.3 2.1E+02 0.0046 23.0 9.4 42 52-94 23-73 (97)
304 PRK14431 acylphosphatase; Prov 38.3 1.1E+02 0.0024 24.3 6.0 57 103-164 18-75 (89)
305 PRK14433 acylphosphatase; Prov 38.1 1.2E+02 0.0025 24.1 6.0 59 102-164 16-74 (87)
306 PRK13820 argininosuccinate syn 38.1 1E+02 0.0022 31.4 6.9 58 128-189 2-64 (394)
307 PRK14426 acylphosphatase; Prov 37.9 1.4E+02 0.0029 23.9 6.4 59 102-164 19-78 (92)
308 PF02601 Exonuc_VII_L: Exonucl 37.4 2.8E+02 0.0061 26.5 9.7 92 123-215 9-116 (319)
309 PRK00124 hypothetical protein; 37.2 2.9E+02 0.0063 24.5 8.9 85 86-186 1-91 (151)
310 PRK10124 putative UDP-glucose 37.0 3.1E+02 0.0068 28.1 10.4 60 127-188 142-210 (463)
311 PF04007 DUF354: Protein of un 36.6 2.7E+02 0.0058 27.6 9.5 77 129-212 1-91 (335)
312 PRK14444 acylphosphatase; Prov 36.5 1.5E+02 0.0032 23.7 6.4 57 102-162 19-75 (92)
313 TIGR00166 S6 ribosomal protein 36.4 1.7E+02 0.0037 23.1 6.7 41 53-94 18-67 (93)
314 PRK13936 phosphoheptose isomer 36.3 2.9E+02 0.0063 24.8 9.0 55 155-212 111-166 (197)
315 PRK14445 acylphosphatase; Prov 36.3 1.2E+02 0.0026 24.1 5.9 59 102-164 19-77 (91)
316 PRK14427 acylphosphatase; Prov 36.1 1.3E+02 0.0029 24.1 6.1 58 102-163 21-78 (94)
317 PRK14437 acylphosphatase; Prov 35.9 1.3E+02 0.0029 25.0 6.2 58 102-163 38-95 (109)
318 PRK11391 etp phosphotyrosine-p 35.7 1.4E+02 0.003 25.6 6.6 79 129-213 3-84 (144)
319 PRK10886 DnaA initiator-associ 35.5 2.6E+02 0.0056 25.4 8.6 54 156-212 110-164 (196)
320 PF14257 DUF4349: Domain of un 35.4 1.8E+02 0.0038 27.2 7.8 62 44-107 53-115 (262)
321 PRK14438 acylphosphatase; Prov 35.3 1.3E+02 0.0029 23.9 5.9 58 103-164 19-76 (91)
322 PRK06372 translation initiatio 35.2 1.7E+02 0.0037 28.0 7.7 69 132-210 89-157 (253)
323 PRK09084 aspartate kinase III; 35.1 2.3E+02 0.005 29.0 9.1 35 42-76 306-343 (448)
324 PF06057 VirJ: Bacterial virul 35.0 1.3E+02 0.0028 27.7 6.6 66 54-142 16-81 (192)
325 PF11071 DUF2872: Protein of u 35.0 1.6E+02 0.0035 25.8 6.7 99 143-267 12-111 (141)
326 PRK14451 acylphosphatase; Prov 34.9 1.5E+02 0.0033 23.5 6.2 59 102-164 18-76 (89)
327 PRK14441 acylphosphatase; Prov 34.9 1.4E+02 0.0031 23.9 6.1 58 102-163 20-77 (93)
328 PF01784 NIF3: NIF3 (NGG1p int 34.8 1.1E+02 0.0024 28.4 6.3 84 89-190 135-221 (241)
329 PRK14450 acylphosphatase; Prov 34.7 1.5E+02 0.0032 23.6 6.1 59 102-163 17-75 (91)
330 PF01890 CbiG_C: Cobalamin syn 34.5 1.8E+02 0.0038 24.4 6.9 55 134-188 6-65 (121)
331 smart00226 LMWPc Low molecular 34.3 1.2E+02 0.0026 25.2 5.9 76 133-214 2-81 (140)
332 cd01988 Na_H_Antiporter_C The 34.2 2.3E+02 0.005 22.2 9.2 43 173-215 61-105 (132)
333 PF00763 THF_DHG_CYH: Tetrahyd 34.2 1.6E+02 0.0035 24.4 6.5 31 173-203 50-80 (117)
334 PF09419 PGP_phosphatase: Mito 34.0 2E+02 0.0044 25.7 7.5 70 142-212 64-143 (168)
335 TIGR02853 spore_dpaA dipicolin 34.0 3E+02 0.0066 26.3 9.3 65 128-211 151-216 (287)
336 PRK01018 50S ribosomal protein 34.0 54 0.0012 26.6 3.6 48 134-187 17-64 (99)
337 PRK05234 mgsA methylglyoxal sy 33.9 3.1E+02 0.0068 23.7 10.6 33 38-71 2-36 (142)
338 PRK04148 hypothetical protein; 33.9 2.9E+02 0.0064 23.9 8.2 51 127-188 16-66 (134)
339 PRK14428 acylphosphatase; Prov 33.0 1.9E+02 0.004 23.6 6.5 58 103-164 24-81 (97)
340 PF10741 T2SM_b: Type II secre 32.9 2.2E+02 0.0048 23.0 7.1 56 54-112 17-73 (110)
341 PF10087 DUF2325: Uncharacteri 32.9 1.6E+02 0.0035 23.2 6.1 42 170-211 12-55 (97)
342 PRK14425 acylphosphatase; Prov 32.9 1.9E+02 0.004 23.3 6.5 58 102-163 21-78 (94)
343 PF01008 IF-2B: Initiation fac 32.9 1.1E+02 0.0024 28.7 6.0 74 132-213 110-185 (282)
344 TIGR00268 conserved hypothetic 32.8 1.3E+02 0.0028 28.0 6.4 55 129-188 13-72 (252)
345 PRK00973 glucose-6-phosphate i 32.8 1.1E+02 0.0023 31.7 6.2 58 128-189 132-197 (446)
346 TIGR00420 trmU tRNA (5-methyla 32.8 94 0.002 30.8 5.7 55 129-188 1-70 (352)
347 TIGR03679 arCOG00187 arCOG0018 32.5 3E+02 0.0065 25.2 8.6 18 172-189 47-64 (218)
348 PRK07714 hypothetical protein; 32.5 1.7E+02 0.0037 23.5 6.2 58 134-202 19-76 (100)
349 COG1921 SelA Selenocysteine sy 32.4 2E+02 0.0043 29.4 7.9 82 130-213 134-222 (395)
350 PRK13530 arsenate reductase; P 32.2 3.1E+02 0.0067 23.1 8.5 77 128-212 3-82 (133)
351 COG1184 GCD2 Translation initi 32.2 2.5E+02 0.0055 27.6 8.4 66 138-211 128-194 (301)
352 PRK08535 translation initiatio 32.1 2.5E+02 0.0053 27.4 8.4 54 133-188 124-178 (310)
353 PRK08961 bifunctional aspartat 32.1 5.1E+02 0.011 28.9 11.7 34 43-76 323-359 (861)
354 cd06281 PBP1_LacI_like_5 Ligan 32.0 2.8E+02 0.0062 24.7 8.3 73 98-188 13-86 (269)
355 PRK07027 cobalamin biosynthesi 31.3 1E+02 0.0022 26.1 4.9 40 149-188 27-67 (126)
356 PRK14448 acylphosphatase; Prov 31.2 2.3E+02 0.005 22.5 6.7 58 102-163 17-74 (90)
357 PTZ00345 glycerol-3-phosphate 30.9 1.2E+02 0.0027 30.3 6.2 84 127-213 10-102 (365)
358 PRK08335 translation initiatio 30.9 2.6E+02 0.0057 27.0 8.2 65 138-210 119-183 (275)
359 PRK00536 speE spermidine synth 30.8 76 0.0016 30.4 4.5 43 126-180 71-113 (262)
360 PLN02748 tRNA dimethylallyltra 30.8 2.9E+02 0.0063 28.8 9.0 108 28-149 8-131 (468)
361 PRK14420 acylphosphatase; Prov 30.5 1.8E+02 0.0038 23.0 5.9 58 103-164 18-75 (91)
362 cd00532 MGS-like MGS-like doma 30.4 1.1E+02 0.0024 24.9 4.9 30 43-73 2-31 (112)
363 PRK14435 acylphosphatase; Prov 30.4 1.8E+02 0.0039 23.1 6.0 59 102-164 17-75 (90)
364 COG1254 AcyP Acylphosphatases 30.2 3E+02 0.0064 22.3 7.2 58 102-163 19-76 (92)
365 PRK14442 acylphosphatase; Prov 30.2 1.8E+02 0.0039 23.2 5.9 59 102-164 19-77 (91)
366 TIGR02689 ars_reduc_gluta arse 30.1 1.5E+02 0.0033 24.5 5.8 76 129-212 1-79 (126)
367 PRK06407 ornithine cyclodeamin 29.6 2E+02 0.0044 27.7 7.3 101 127-274 116-222 (301)
368 PRK14452 acylphosphatase; Prov 29.6 2.3E+02 0.0049 23.6 6.6 59 102-164 35-93 (107)
369 TIGR00524 eIF-2B_rel eIF-2B al 29.4 2.4E+02 0.0052 27.5 7.7 64 139-210 137-203 (303)
370 PF01451 LMWPc: Low molecular 29.3 1.7E+02 0.0036 24.2 5.9 42 167-213 44-85 (138)
371 PF01262 AlaDh_PNT_C: Alanine 29.1 1.7E+02 0.0037 25.3 6.2 78 124-212 16-110 (168)
372 PRK06823 ornithine cyclodeamin 29.0 3.5E+02 0.0076 26.4 8.8 104 127-274 127-232 (315)
373 PRK06079 enoyl-(acyl carrier p 28.9 1.9E+02 0.0041 26.2 6.7 68 43-114 8-82 (252)
374 PF01248 Ribosomal_L7Ae: Ribos 28.6 75 0.0016 24.8 3.5 26 173-203 50-75 (95)
375 cd01424 MGS_CPS_II Methylglyox 28.3 1.2E+02 0.0025 24.4 4.7 30 43-73 3-32 (110)
376 PF08660 Alg14: Oligosaccharid 28.1 3.4E+02 0.0075 24.0 8.0 138 131-273 1-164 (170)
377 PTZ00106 60S ribosomal protein 28.0 80 0.0017 26.2 3.6 48 134-187 26-73 (108)
378 PRK14421 acylphosphatase; Prov 27.8 2.7E+02 0.0059 22.7 6.7 59 102-164 19-77 (99)
379 TIGR03022 WbaP_sugtrans Undeca 27.6 4.8E+02 0.01 26.2 9.9 37 127-165 124-161 (456)
380 COG0527 LysC Aspartokinases [A 27.6 2.8E+02 0.006 28.7 8.2 38 38-75 379-419 (447)
381 COG2910 Putative NADH-flavin r 27.2 2.2E+02 0.0047 26.7 6.5 32 129-166 1-35 (211)
382 COG0240 GpsA Glycerol-3-phosph 27.1 1.8E+02 0.004 29.0 6.5 72 128-211 1-78 (329)
383 PRK14432 acylphosphatase; Prov 27.0 2.6E+02 0.0057 22.4 6.4 58 102-163 17-75 (93)
384 smart00851 MGS MGS-like domain 26.5 1.4E+02 0.0031 23.0 4.7 38 144-185 46-89 (90)
385 PRK12326 preprotein translocas 26.4 1.1E+02 0.0023 33.9 5.1 126 63-201 336-471 (764)
386 PF06877 RraB: Regulator of ri 26.2 1.3E+02 0.0028 23.9 4.5 71 44-115 27-97 (104)
387 PRK04998 hypothetical protein; 26.1 3.3E+02 0.0072 21.5 7.6 66 42-112 15-81 (88)
388 cd05298 GH4_GlvA_pagL_like Gly 25.7 1.1E+02 0.0024 31.3 5.0 75 129-211 1-81 (437)
389 PLN02840 tRNA dimethylallyltra 25.6 5E+02 0.011 26.8 9.5 97 38-148 17-129 (421)
390 PRK14443 acylphosphatase; Prov 25.5 2.8E+02 0.0062 22.4 6.3 58 103-164 20-78 (93)
391 PRK14446 acylphosphatase; Prov 25.2 2E+02 0.0044 22.9 5.4 57 104-164 19-75 (88)
392 PF01210 NAD_Gly3P_dh_N: NAD-d 25.1 1.7E+02 0.0037 25.0 5.4 75 130-215 1-80 (157)
393 cd01422 MGS Methylglyoxal synt 25.1 1.3E+02 0.0028 24.8 4.4 39 144-186 61-106 (115)
394 cd00115 LMWPc Substituted upda 24.9 2.1E+02 0.0045 23.9 5.7 81 129-215 1-87 (141)
395 TIGR03590 PseG pseudaminic aci 24.9 3.9E+02 0.0084 25.1 8.2 79 128-213 170-250 (279)
396 PF02603 Hpr_kinase_N: HPr Ser 24.8 19 0.00042 30.3 -0.6 57 128-189 48-113 (127)
397 PLN03194 putative disease resi 24.7 1E+02 0.0022 28.3 4.0 35 36-70 22-57 (187)
398 cd05015 SIS_PGI_1 Phosphogluco 24.6 1.3E+02 0.0028 26.0 4.5 58 127-189 72-138 (158)
399 COG2179 Predicted hydrolase of 24.5 2.5E+02 0.0054 25.7 6.3 67 141-213 50-118 (175)
400 PRK12439 NAD(P)H-dependent gly 24.4 1.4E+02 0.0029 29.2 5.1 24 125-148 4-28 (341)
401 PRK04175 rpl7ae 50S ribosomal 24.2 1.2E+02 0.0026 25.6 4.1 58 134-203 31-90 (122)
402 PRK05925 aspartate kinase; Pro 24.1 3.3E+02 0.0072 27.9 8.0 61 40-113 370-432 (440)
403 PLN02688 pyrroline-5-carboxyla 24.1 2.9E+02 0.0062 25.4 7.0 66 129-212 1-69 (266)
404 PRK05718 keto-hydroxyglutarate 24.1 5.7E+02 0.012 23.6 12.7 117 44-210 17-134 (212)
405 PRK07283 hypothetical protein; 23.9 2.6E+02 0.0057 22.5 5.9 64 134-211 19-84 (98)
406 PF02826 2-Hacid_dh_C: D-isome 23.9 2.8E+02 0.006 24.2 6.6 116 127-295 35-155 (178)
407 TIGR03023 WcaJ_sugtrans Undeca 23.7 6.9E+02 0.015 25.1 10.2 60 127-188 127-198 (451)
408 PF02441 Flavoprotein: Flavopr 23.5 1.2E+02 0.0026 25.2 3.9 35 129-165 1-37 (129)
409 PHA00771 head assembly protein 23.3 1.1E+02 0.0025 26.7 3.8 49 259-307 62-114 (151)
410 PF07485 DUF1529: Domain of Un 23.3 4E+02 0.0087 22.7 7.1 49 55-108 69-118 (123)
411 cd01997 GMP_synthase_C The C-t 23.3 2.3E+02 0.005 27.5 6.4 56 130-189 1-62 (295)
412 TIGR03677 rpl7ae 50S ribosomal 23.1 1.5E+02 0.0033 24.7 4.5 28 171-203 59-86 (117)
413 COG1412 Uncharacterized protei 22.8 1.3E+02 0.0029 26.1 4.2 26 158-188 99-124 (136)
414 TIGR00096 probable S-adenosylm 22.7 7E+02 0.015 24.1 9.9 65 142-215 62-134 (276)
415 cd01965 Nitrogenase_MoFe_beta_ 22.6 5.4E+02 0.012 25.8 9.1 112 96-215 254-382 (428)
416 COG0528 PyrH Uridylate kinase 22.6 2.8E+02 0.006 26.5 6.5 17 172-188 200-216 (238)
417 PF04592 SelP_N: Selenoprotein 22.4 4.8E+02 0.01 25.0 8.0 68 142-215 48-121 (238)
418 COG1748 LYS9 Saccharopine dehy 22.3 2.7E+02 0.0058 28.4 6.8 73 128-212 1-76 (389)
419 PRK14424 acylphosphatase; Prov 22.3 3.6E+02 0.0077 21.8 6.3 58 102-163 22-79 (94)
420 PF01113 DapB_N: Dihydrodipico 22.2 1.3E+02 0.0028 24.9 3.9 34 129-166 1-36 (124)
421 cd05565 PTS_IIB_lactose PTS_II 22.2 1.7E+02 0.0036 24.0 4.4 36 172-211 19-54 (99)
422 cd03466 Nitrogenase_NifN_2 Nit 22.2 8.2E+02 0.018 24.7 10.9 94 45-187 303-396 (429)
423 PF07085 DRTGG: DRTGG domain; 22.0 89 0.0019 24.9 2.8 31 158-188 62-92 (105)
424 PF01206 TusA: Sulfurtransfera 22.0 1.9E+02 0.0041 21.1 4.4 40 44-88 29-68 (70)
425 COG1671 Uncharacterized protei 21.8 5.8E+02 0.012 22.8 8.8 84 86-185 2-89 (150)
426 PRK05294 carB carbamoyl phosph 21.8 7.6E+02 0.016 28.2 10.9 30 157-186 1004-1037(1066)
427 PRK09536 btuD corrinoid ABC tr 21.8 4.6E+02 0.01 26.5 8.4 71 138-214 275-348 (402)
428 cd05197 GH4_glycoside_hydrolas 21.8 1E+02 0.0023 31.4 3.8 75 129-211 1-81 (425)
429 TIGR00963 secA preprotein tran 21.7 1.3E+02 0.0029 33.2 4.8 138 63-209 314-458 (745)
430 PRK09977 putative Mg(2+) trans 21.7 5.6E+02 0.012 23.9 8.3 60 43-107 145-204 (215)
431 COG0303 MoeA Molybdopterin bio 21.7 1.8E+02 0.0039 29.7 5.4 73 127-215 175-253 (404)
432 cd01545 PBP1_SalR Ligand-bindi 21.6 5.5E+02 0.012 22.6 8.2 74 98-189 13-88 (270)
433 PRK10799 metal-binding protein 21.5 6.6E+02 0.014 23.4 9.3 134 53-203 76-231 (247)
434 PF00154 RecA: recA bacterial 21.2 6.9E+02 0.015 24.7 9.3 23 204-227 131-153 (322)
435 PRK10887 glmM phosphoglucosami 21.1 8.1E+02 0.018 24.7 10.1 123 44-188 173-302 (443)
436 COG0421 SpeE Spermidine syntha 21.1 2.6E+02 0.0055 27.1 6.2 77 129-215 78-160 (282)
437 KOG2741 Dimeric dihydrodiol de 21.0 2.8E+02 0.006 28.0 6.5 52 126-183 4-56 (351)
438 cd01713 PAPS_reductase This do 20.9 3.3E+02 0.0072 22.3 6.2 58 130-189 1-63 (173)
439 COG3967 DltE Short-chain dehyd 20.8 7.2E+02 0.016 23.8 8.8 120 181-301 51-188 (245)
440 cd01976 Nitrogenase_MoFe_alpha 20.8 8.7E+02 0.019 24.5 12.3 184 50-280 181-415 (421)
441 PRK05583 ribosomal protein L7A 20.8 4.2E+02 0.0092 21.7 6.6 65 134-211 18-84 (104)
442 TIGR01284 alt_nitrog_alph nitr 20.7 8.1E+02 0.017 25.1 10.1 162 42-215 199-406 (457)
443 PRK06141 ornithine cyclodeamin 20.5 2.8E+02 0.0061 26.7 6.4 72 127-215 124-200 (314)
444 TIGR02371 ala_DH_arch alanine 20.5 2.4E+02 0.0053 27.4 6.0 71 127-214 127-202 (325)
445 PRK09466 metL bifunctional asp 20.5 3.1E+02 0.0067 30.5 7.4 82 42-138 317-401 (810)
446 PRK14174 bifunctional 5,10-met 20.1 3E+02 0.0064 26.9 6.4 30 174-203 53-82 (295)
447 COG0027 PurT Formate-dependent 20.1 4.9E+02 0.011 26.4 7.8 70 125-209 9-80 (394)
No 1
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=100.00 E-value=6.4e-66 Score=479.31 Aligned_cols=247 Identities=43% Similarity=0.713 Sum_probs=232.7
Q ss_pred CCCCcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHHHHHhhh
Q 020794 36 VSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNA 115 (321)
Q Consensus 36 ~~~~~~~~Iltv~G~Dr~GIVA~VS~~La~~G~NI~d~~q~~~~l~g~F~Mr~~v~~~~~~~~~~~L~~~L~~la~~lg~ 115 (321)
|++.+++++||+.|||++||||+||++|+++||||++++|+.|...|+||||+++.....+.+.++|+++|++++++|||
T Consensus 1 m~~~~~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~D~~~g~FFmR~~f~~~~~~~~~~~l~~~f~~~a~~f~m 80 (287)
T COG0788 1 MSNEPDTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFDDPETGRFFMRVEFEGEGGPLDREALRAAFAPLAEEFGM 80 (287)
T ss_pred CCCCccceEEEEecCCCCCcHHHHHHHHHHcCCceeecccccccccCeEEEEEEEecCCCcccHHHHHHHHHHHHHhhCc
Confidence 45666899999999999999999999999999999999999988899999999999888778899999999999999996
Q ss_pred ccceeeeCCCCCCeeEEEEEeCCchhHHHHHHhhhcCCcCeeEEEEEeCCCCCCCchHHHHHHHcCCCEEEEc-CCcc--
Q 020794 116 MRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC-AKEN-- 192 (321)
Q Consensus 116 ~~~~~r~~~~~~~~rIavl~S~~g~~l~~lL~~~~~~~l~~~i~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~-~~~~-- 192 (321)
.|++.+.+.++||++|+|+++|||.+||.+|+.|+|+++|++|||||+ .+...++++|||+++++ .+++
T Consensus 81 ---~~~~~~~~~~~ri~i~VSK~~HCL~DLL~r~~~g~L~~eI~~VIsNH~-----dl~~~v~~~~IPfhhip~~~~~k~ 152 (287)
T COG0788 81 ---DWRLHDAAQRKRIAILVSKEDHCLGDLLYRWRIGELPAEIVAVISNHD-----DLRPLVERFDIPFHHIPVTKENKA 152 (287)
T ss_pred ---eeEEeccccCceEEEEEechHHHHHHHHHHHhcCCcCCceEEEEcCCH-----HHHHHHHHcCCCeeeccCCCCcch
Confidence 478889999999999999999999999999999999999999999996 47899999999999999 4554
Q ss_pred hhHHHHHHHhc--CCCEEEEEeeccccchhhHhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeEEecCCCCCCC
Q 020794 193 EREEELLELVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSF 270 (321)
Q Consensus 193 ~~~~~~~~~l~--~~Dlivlag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~l~~~~~~~INiHpslLP~y 270 (321)
+.++.++++++ ++|++|||+||| ||+++|++++++++|||||||||+|
T Consensus 153 e~E~~~~~ll~~~~~DlvVLARYMq------------------------------ILS~d~~~~~~g~iINIHHSFLPaF 202 (287)
T COG0788 153 EAEARLLELLEEYGADLVVLARYMQ------------------------------ILSPDFVERFPGKIINIHHSFLPAF 202 (287)
T ss_pred HHHHHHHHHHHHhCCCEEeehhhHh------------------------------hCCHHHHHhccCcEEEecccccccC
Confidence 34567888887 799999999999 9999999999999999999999999
Q ss_pred CCChHHHHHHHhCCCeeEEEEEEecCCCCCCCeEEEEEEecCCCCChhhh
Q 020794 271 KGGKPAKQAFDAGVKLIGATSHFVTEELDAGPIIEQMLELLAISFATELM 320 (321)
Q Consensus 271 rG~~pi~~Ai~~G~~~~G~TvH~v~~~~D~G~Ii~Q~~~~I~~~~t~~~L 320 (321)
+|++||+||.++|+|.+|+|.|||++++|+||||.|..++++|.+|+++|
T Consensus 203 ~GA~PY~QA~eRGVKlIGATAHYVT~dLDeGPIIeQdv~rV~H~~s~ed~ 252 (287)
T COG0788 203 IGANPYHQAYERGVKLIGATAHYVTADLDEGPIIEQDVIRVDHAYSVEDL 252 (287)
T ss_pred CCCChHHHHHhcCCeEeeeeeeeccCCCCCCCceeeeeeecCccCCHHHH
Confidence 99999999999999999999999999999999999999999999999997
No 2
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=100.00 E-value=2.1e-65 Score=485.09 Aligned_cols=240 Identities=42% Similarity=0.732 Sum_probs=222.4
Q ss_pred EEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHH-HHHHhhhccceee
Q 020794 43 GIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK-LSKMFNAMRSVVR 121 (321)
Q Consensus 43 ~Iltv~G~Dr~GIVA~VS~~La~~G~NI~d~~q~~~~l~g~F~Mr~~v~~~~~~~~~~~L~~~L~~-la~~lg~~~~~~r 121 (321)
+|||++|||||||||+||++|+++||||+|++|+++..+|.|+||+++++++...+.++|+++|++ +++++|| .|+
T Consensus 1 ~~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~~~~~~~~~~l~~~l~~~~~~~~~l---~i~ 77 (280)
T TIGR00655 1 GILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLEGFRLEESSLLAAFKSALAEKFEM---TWE 77 (280)
T ss_pred CEEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHHHHhCC---EEE
Confidence 489999999999999999999999999999999998788999999999998755789999999999 9999997 467
Q ss_pred eCCCCCCeeEEEEEeCCchhHHHHHHhhhcCCcCeeEEEEEeCCCCCCCchHHHHHHHcCCCEEEEcCCcc---hhHHHH
Q 020794 122 VPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKEN---EREEEL 198 (321)
Q Consensus 122 ~~~~~~~~rIavl~S~~g~~l~~lL~~~~~~~l~~~i~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~~~~~---~~~~~~ 198 (321)
+.+.++++|||||+||+||||++|+++++.|+++++|++|+||+++ +..+|+++|||+++++.+.. ..++++
T Consensus 78 l~~~~~~~ki~vl~Sg~g~nl~~l~~~~~~g~l~~~i~~visn~~~-----~~~~A~~~gIp~~~~~~~~~~~~~~e~~~ 152 (280)
T TIGR00655 78 LILADKLKRVAILVSKEDHCLGDLLWRWYSGELDAEIALVISNHED-----LRSLVERFGIPFHYIPATKDNRVEHEKRQ 152 (280)
T ss_pred EecCCCCcEEEEEEcCCChhHHHHHHHHHcCCCCcEEEEEEEcChh-----HHHHHHHhCCCEEEcCCCCcchhhhHHHH
Confidence 8888899999999999999999999999999999999999999953 45579999999998875322 224577
Q ss_pred HHHhc--CCCEEEEEeeccccchhhHhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeEEecCCCCCCCCCChHH
Q 020794 199 LELVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPA 276 (321)
Q Consensus 199 ~~~l~--~~Dlivlag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~l~~~~~~~INiHpslLP~yrG~~pi 276 (321)
+++++ ++|++|+||||| |||++|++.|++++||+||||||+|||++|+
T Consensus 153 ~~~l~~~~~Dlivlagym~------------------------------il~~~~l~~~~~~iINiHpSLLP~f~G~~p~ 202 (280)
T TIGR00655 153 LELLKQYQVDLVVLAKYMQ------------------------------ILSPDFVKRYPNKIINIHHSFLPAFIGANPY 202 (280)
T ss_pred HHHHHHhCCCEEEEeCchh------------------------------hCCHHHHhhccCCEEEecCCcCCCCCCcCHH
Confidence 88776 899999999999 9999999999999999999999999999999
Q ss_pred HHHHHhCCCeeEEEEEEecCCCCCCCeEEEEEEecCCCCChhhh
Q 020794 277 KQAFDAGVKLIGATSHFVTEELDAGPIIEQMLELLAISFATELM 320 (321)
Q Consensus 277 ~~Ai~~G~~~~G~TvH~v~~~~D~G~Ii~Q~~~~I~~~~t~~~L 320 (321)
+||+.+|++.+|+|+|+|++++|+||||.|+.+||.++||+++|
T Consensus 203 ~~ai~~G~k~tG~TvH~V~e~lD~GpII~Q~~v~I~~~dt~~~L 246 (280)
T TIGR00655 203 QRAYERGVKIIGATAHYVTEELDEGPIIEQDVVRVDHTDNVEDL 246 (280)
T ss_pred HHHHHcCCCeEEEEEEEEcCCCcCCCeEEEEEEEcCCCCCHHHH
Confidence 99999999999999999999999999999999999999999987
No 3
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=100.00 E-value=2.4e-64 Score=479.69 Aligned_cols=245 Identities=36% Similarity=0.641 Sum_probs=222.6
Q ss_pred CCcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeC-CCCCChHHHHHHHHHHHHHhhhc
Q 020794 38 PTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFD-PIKWPREQMDEDFFKLSKMFNAM 116 (321)
Q Consensus 38 ~~~~~~Iltv~G~Dr~GIVA~VS~~La~~G~NI~d~~q~~~~l~g~F~Mr~~v~~~-~~~~~~~~L~~~L~~la~~lg~~ 116 (321)
|.+.++|||++|||||||||+||++|+++|+||+|++|+.+...|.||||+++... ....+.++|+++|+++++++|+.
T Consensus 5 ~~m~~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~~d~~~~~ffm~i~~~~~~~~~~~~~~l~~~l~~l~~~l~l~ 84 (289)
T PRK13010 5 PRSPSYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQFDDDESGRFFMRVSFHAQSAEAASVDTFRQEFQPVAEKFDMQ 84 (289)
T ss_pred ccccCEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccccccccCcEEEEEEEEcCCCCCCCHHHHHHHHHHHHHHhCCe
Confidence 34567899999999999999999999999999999999877778999999998833 23568999999999999999973
Q ss_pred cceeeeCCCCCCeeEEEEEeCCchhHHHHHHhhhcCCcCeeEEEEEeCCCCCCCchHHHHHHHcCCCEEEEcCCcc---h
Q 020794 117 RSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKEN---E 193 (321)
Q Consensus 117 ~~~~r~~~~~~~~rIavl~S~~g~~l~~lL~~~~~~~l~~~i~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~~~~~---~ 193 (321)
|++...++++|||||+||+||||++|++++++|+++++|++|+||++ .+.++|+++|||+++++.+.. .
T Consensus 85 ---~~i~~~~~~~kiavl~Sg~g~nl~al~~~~~~~~l~~~i~~visn~~-----~~~~~A~~~gIp~~~~~~~~~~~~~ 156 (289)
T PRK13010 85 ---WAIHPDGQRPKVVIMVSKFDHCLNDLLYRWRMGELDMDIVGIISNHP-----DLQPLAVQHDIPFHHLPVTPDTKAQ 156 (289)
T ss_pred ---EEEecCCCCeEEEEEEeCCCccHHHHHHHHHCCCCCcEEEEEEECCh-----hHHHHHHHcCCCEEEeCCCcccccc
Confidence 55677778999999999999999999999999999999999999995 357999999999999875422 2
Q ss_pred hHHHHHHHhc--CCCEEEEEeeccccchhhHhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeEEecCCCCCCCC
Q 020794 194 REEELLELVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFK 271 (321)
Q Consensus 194 ~~~~~~~~l~--~~Dlivlag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~l~~~~~~~INiHpslLP~yr 271 (321)
.+.+++++++ ++|++|+||||| |||+.|++.|++++||+||||||+||
T Consensus 157 ~~~~~~~~l~~~~~Dlivlagym~------------------------------il~~~~l~~~~~~iiNiHpSlLP~f~ 206 (289)
T PRK13010 157 QEAQILDLIETSGAELVVLARYMQ------------------------------VLSDDLSRKLSGRAINIHHSFLPGFK 206 (289)
T ss_pred hHHHHHHHHHHhCCCEEEEehhhh------------------------------hCCHHHHhhccCCceeeCcccCCCCC
Confidence 2456788786 899999999999 99999999999999999999999999
Q ss_pred CChHHHHHHHhCCCeeEEEEEEecCCCCCCCeEEEEEEecCCCCChhhh
Q 020794 272 GGKPAKQAFDAGVKLIGATSHFVTEELDAGPIIEQMLELLAISFATELM 320 (321)
Q Consensus 272 G~~pi~~Ai~~G~~~~G~TvH~v~~~~D~G~Ii~Q~~~~I~~~~t~~~L 320 (321)
|++|++||+.+|++.+|+|+|+|++++|+||||.|+.+||.++||+++|
T Consensus 207 G~~~~~~ai~~G~k~tG~TvH~v~~~lD~GpII~Q~~v~V~~~dt~e~L 255 (289)
T PRK13010 207 GARPYHQAHARGVKLIGATAHFVTDDLDEGPIIEQDVERVDHSYSPEDL 255 (289)
T ss_pred CCCHHHHHHHcCCCeEEEEEEEEcCCCCCCCceEEEEEEcCCCCCHHHH
Confidence 9999999999999999999999999999999999999999999999987
No 4
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=100.00 E-value=1.2e-61 Score=460.57 Aligned_cols=246 Identities=37% Similarity=0.644 Sum_probs=224.2
Q ss_pred CCCCcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHHHHHhhh
Q 020794 36 VSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNA 115 (321)
Q Consensus 36 ~~~~~~~~Iltv~G~Dr~GIVA~VS~~La~~G~NI~d~~q~~~~l~g~F~Mr~~v~~~~~~~~~~~L~~~L~~la~~lg~ 115 (321)
||.-++++++|++|+|||||||+||++|+++|+||+|++|+.+..++.|+|++++++|. ..+.++|+++|+++++++++
T Consensus 1 ~~~~m~~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~~p~-~~~~~~L~~~L~~l~~~l~l 79 (286)
T PRK13011 1 MSRRPDTFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFHSEE-GLDEDALRAGFAPIAARFGM 79 (286)
T ss_pred CCCCCceEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEecCC-CCCHHHHHHHHHHHHHHhCc
Confidence 45667789999999999999999999999999999999999777899999999999886 46799999999999999987
Q ss_pred ccceeeeCCCCCCeeEEEEEeCCchhHHHHHHhhhcCCcCeeEEEEEeCCCCCCCchHHHHHHHcCCCEEEEcCCcch--
Q 020794 116 MRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENE-- 193 (321)
Q Consensus 116 ~~~~~r~~~~~~~~rIavl~S~~g~~l~~lL~~~~~~~l~~~i~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~-- 193 (321)
. +++....+++|||||+||+|+||++|+++++.|+++++|++|+||+++ +..+|+++|||+++++.+...
T Consensus 80 ~---i~i~~~~~~~ri~vl~Sg~g~nl~al~~~~~~~~~~~~i~~visn~~~-----~~~lA~~~gIp~~~~~~~~~~~~ 151 (286)
T PRK13011 80 Q---WELHDPAARPKVLIMVSKFDHCLNDLLYRWRIGELPMDIVGVVSNHPD-----LEPLAAWHGIPFHHFPITPDTKP 151 (286)
T ss_pred E---EEEeecccCceEEEEEcCCcccHHHHHHHHHcCCCCcEEEEEEECCcc-----HHHHHHHhCCCEEEeCCCcCchh
Confidence 3 556667789999999999999999999999999999999999999852 566699999999988643222
Q ss_pred -hHHHHHHHhc--CCCEEEEEeeccccchhhHhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeEEecCCCCCCC
Q 020794 194 -REEELLELVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSF 270 (321)
Q Consensus 194 -~~~~~~~~l~--~~Dlivlag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~l~~~~~~~INiHpslLP~y 270 (321)
.++++.++++ ++|++|++|||+ |||++|++.|++++||+||||||+|
T Consensus 152 ~~~~~~~~~l~~~~~Dlivlagy~~------------------------------il~~~~l~~~~~~iiNiHpSLLP~~ 201 (286)
T PRK13011 152 QQEAQVLDVVEESGAELVVLARYMQ------------------------------VLSPELCRKLAGRAINIHHSFLPGF 201 (286)
T ss_pred hhHHHHHHHHHHhCcCEEEEeChhh------------------------------hCCHHHHhhccCCeEEeccccCCCC
Confidence 2446777776 899999999999 9999999999999999999999999
Q ss_pred CCChHHHHHHHhCCCeeEEEEEEecCCCCCCCeEEEEEEecCCCCChhhh
Q 020794 271 KGGKPAKQAFDAGVKLIGATSHFVTEELDAGPIIEQMLELLAISFATELM 320 (321)
Q Consensus 271 rG~~pi~~Ai~~G~~~~G~TvH~v~~~~D~G~Ii~Q~~~~I~~~~t~~~L 320 (321)
||++|++||+.+|++.+|+|+|+|++++|+||||.|+.+||.++||+++|
T Consensus 202 rG~~~~~~ai~~G~~~tG~TvH~v~~~~D~G~Ii~Q~~v~I~~~dt~~~L 251 (286)
T PRK13011 202 KGAKPYHQAYERGVKLIGATAHYVTDDLDEGPIIEQDVERVDHAYSPEDL 251 (286)
T ss_pred CCCcHHHHHHHCCCCeEEEEEEEEcCCCcCCCcEEEEEEEcCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999987
No 5
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=100.00 E-value=2.3e-61 Score=458.55 Aligned_cols=244 Identities=44% Similarity=0.746 Sum_probs=222.6
Q ss_pred CcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHHHHHhhhccc
Q 020794 39 TLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRS 118 (321)
Q Consensus 39 ~~~~~Iltv~G~Dr~GIVA~VS~~La~~G~NI~d~~q~~~~l~g~F~Mr~~v~~~~~~~~~~~L~~~L~~la~~lg~~~~ 118 (321)
.++++++|++|+||||||++||++|+++||||+|++|+....+|.|+|++.+++++.+.+.++|+++|+++++++++.
T Consensus 3 ~~~~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~~~~~~~~~~~L~~~L~~l~~~l~l~-- 80 (286)
T PRK06027 3 MMQRYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFEGDGLIFNLETLRADFAALAEEFEMD-- 80 (286)
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHHHhCCE--
Confidence 346899999999999999999999999999999999998557899999999999444567999999999999999873
Q ss_pred eeeeCCCCCCeeEEEEEeCCchhHHHHHHhhhcCCcCeeEEEEEeCCCCCCCchHHHHHHHcCCCEEEEcCCc-c--hhH
Q 020794 119 VVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKE-N--ERE 195 (321)
Q Consensus 119 ~~r~~~~~~~~rIavl~S~~g~~l~~lL~~~~~~~l~~~i~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~~~~-~--~~~ 195 (321)
+++.+..+++|||||+||+|+||++|+++++.|.++++|++|+||++ .+..+|+++|||++.++.+. + ..+
T Consensus 81 -i~l~~~~~~~ri~vl~Sg~gsnl~al~~~~~~~~~~~~i~~visn~~-----~~~~lA~~~gIp~~~~~~~~~~~~~~~ 154 (286)
T PRK06027 81 -WRLLDSAERKRVVILVSKEDHCLGDLLWRWRSGELPVEIAAVISNHD-----DLRSLVERFGIPFHHVPVTKETKAEAE 154 (286)
T ss_pred -EEEcccccCcEEEEEEcCCCCCHHHHHHHHHcCCCCcEEEEEEEcCh-----hHHHHHHHhCCCEEEeccCccccchhH
Confidence 56777889999999999999999999999999999999999999985 35667999999999887542 2 234
Q ss_pred HHHHHHhc--CCCEEEEEeeccccchhhHhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeEEecCCCCCCCCCC
Q 020794 196 EELLELVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGG 273 (321)
Q Consensus 196 ~~~~~~l~--~~Dlivlag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~l~~~~~~~INiHpslLP~yrG~ 273 (321)
.++.++++ ++|++|++|||+ |||++|++.|++++||+||||||+|||+
T Consensus 155 ~~~~~~l~~~~~Dlivlagy~~------------------------------il~~~~l~~~~~~iiNiHpSLLP~yrG~ 204 (286)
T PRK06027 155 ARLLELIDEYQPDLVVLARYMQ------------------------------ILSPDFVARFPGRIINIHHSFLPAFKGA 204 (286)
T ss_pred HHHHHHHHHhCCCEEEEecchh------------------------------hcCHHHHhhccCCceecCcccCCCCCCC
Confidence 56778776 899999999999 9999999999999999999999999999
Q ss_pred hHHHHHHHhCCCeeEEEEEEecCCCCCCCeEEEEEEecCCCCChhhh
Q 020794 274 KPAKQAFDAGVKLIGATSHFVTEELDAGPIIEQMLELLAISFATELM 320 (321)
Q Consensus 274 ~pi~~Ai~~G~~~~G~TvH~v~~~~D~G~Ii~Q~~~~I~~~~t~~~L 320 (321)
+|++||+.+|++.+|+|+|+|++++|+||||.|+.+||.++||.++|
T Consensus 205 ~~~~~ai~~G~~~tG~TiH~v~~~~D~G~Ii~Q~~v~i~~~dt~~~L 251 (286)
T PRK06027 205 KPYHQAYERGVKLIGATAHYVTADLDEGPIIEQDVIRVDHRDTAEDL 251 (286)
T ss_pred CHHHHHHHCCCCeEEEEEEEEcCCCcCCCcEEEEEEEcCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999987
No 6
>PLN02828 formyltetrahydrofolate deformylase
Probab=100.00 E-value=3.2e-61 Score=453.59 Aligned_cols=232 Identities=77% Similarity=1.290 Sum_probs=217.1
Q ss_pred HHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHHHHHhhhccceeeeCCCCCCeeEEEEEeCC
Q 020794 59 LSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQ 138 (321)
Q Consensus 59 VS~~La~~G~NI~d~~q~~~~l~g~F~Mr~~v~~~~~~~~~~~L~~~L~~la~~lg~~~~~~r~~~~~~~~rIavl~S~~ 138 (321)
||++|+++||||++++|+.|...|.||||++++.+....+.++|+++|++++++|+|.+|.|++.+.++++|||||+||+
T Consensus 1 ~~~~~~~~~~ni~~~~~~~d~~~~~ff~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~riavlvSg~ 80 (268)
T PLN02828 1 LSDCIASRGGNILGVDVFVPENKNVFYSRSEFIFDPVKWPRAQMDEDFQEISKHFKALKSVVRVPGLDPKYKIAVLASKQ 80 (268)
T ss_pred CcHHHHhCCCCEeEcccccCCCCCeeEEEEEEEeCCCCCCHHHHHHHHHHHHHhcCCcceEEEEccCCCCcEEEEEEcCC
Confidence 57899999999999999999999999999999987544578999999999999999766689999999999999999999
Q ss_pred chhHHHHHHhhhcCCcCeeEEEEEeCCCCCCCchHHHHHHHcCCCEEEEcCC-cchhHHHHHHHhcCCCEEEEEeecccc
Q 020794 139 EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAK-ENEREEELLELVQNTDFLVLARYMQPV 217 (321)
Q Consensus 139 g~~l~~lL~~~~~~~l~~~i~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~~~-~~~~~~~~~~~l~~~Dlivlag~~~~~ 217 (321)
||||++||+++++|+++++|++|+||+++++.+++.++|+++|||+++++.+ .+.++++++++++++|++|+|||||
T Consensus 81 g~nl~~ll~~~~~g~l~~eI~~ViSn~~~~~~a~~~~~A~~~gIP~~~~~~~~~~~~e~~~~~~l~~~DliVLAgym~-- 158 (268)
T PLN02828 81 DHCLIDLLHRWQDGRLPVDITCVISNHERGPNTHVMRFLERHGIPYHYLPTTKENKREDEILELVKGTDFLVLARYMQ-- 158 (268)
T ss_pred ChhHHHHHHhhhcCCCCceEEEEEeCCCCCCCchHHHHHHHcCCCEEEeCCCCCCCHHHHHHHHHhcCCEEEEeeehH--
Confidence 9999999999999999999999999998767789999999999999988853 3445667788777899999999999
Q ss_pred chhhHhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeEEecCCCCCCCCCChHHHHHHHhCCCeeEEEEEEecCC
Q 020794 218 PLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEE 297 (321)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~l~~~~~~~INiHpslLP~yrG~~pi~~Ai~~G~~~~G~TvH~v~~~ 297 (321)
|||++|++.|++++|||||||||+|||++|++||+++|++.+|+|+|+|+++
T Consensus 159 ----------------------------IL~~~~l~~~~~riINIHpSlLP~f~Ga~p~~~Ai~~Gvk~tG~TvH~V~~~ 210 (268)
T PLN02828 159 ----------------------------ILSGNFLKGYGKDIINIHHGLLPSFKGGNPSKQAFDAGVKLIGATSHFVTEE 210 (268)
T ss_pred ----------------------------hCCHHHHhhccCCEEEecCccCCCCCCCcHHHHHHHcCCCeEEEEEEEEcCC
Confidence 9999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCeEEEEEEecCCCCChhhh
Q 020794 298 LDAGPIIEQMLELLAISFATELM 320 (321)
Q Consensus 298 ~D~G~Ii~Q~~~~I~~~~t~~~L 320 (321)
+|+||||.|+.++|.++||+++|
T Consensus 211 lD~GpII~Q~~v~V~~~dt~~~L 233 (268)
T PLN02828 211 LDAGPIIEQMVERVSHRDNLRSF 233 (268)
T ss_pred CCCCCeeEEEEEecCCCCCHHHH
Confidence 99999999999999999999997
No 7
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=100.00 E-value=3.8e-44 Score=322.00 Aligned_cols=159 Identities=38% Similarity=0.549 Sum_probs=149.5
Q ss_pred eeEEEEEeCCchhHHHHHHhhhcCCcCeeEEEEEeCCCCCCCchHHHHHHHcCCCEEEEcCCcch----hHHHHHHHhc-
Q 020794 129 YKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENE----REEELLELVQ- 203 (321)
Q Consensus 129 ~rIavl~S~~g~~l~~lL~~~~~~~l~~~i~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~----~~~~~~~~l~- 203 (321)
+||+||+||+||||++|+++++.|.++++|++|+||+ ++++++++|+++|||+..+.+++.. .+.++.+.+.
T Consensus 1 ~ki~VlaSG~GSNlqaiida~~~~~~~a~i~~Visd~---~~A~~lerA~~~gIpt~~~~~k~~~~r~~~d~~l~~~l~~ 77 (200)
T COG0299 1 KKIAVLASGNGSNLQAIIDAIKGGKLDAEIVAVISDK---ADAYALERAAKAGIPTVVLDRKEFPSREAFDRALVEALDE 77 (200)
T ss_pred CeEEEEEeCCcccHHHHHHHHhcCCCCcEEEEEEeCC---CCCHHHHHHHHcCCCEEEeccccCCCHHHHHHHHHHHHHh
Confidence 5999999999999999999999999999999999998 4789999999999999998876432 2467888776
Q ss_pred -CCCEEEEEeeccccchhhHhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeEEecCCCCCCCCCChHHHHHHHh
Q 020794 204 -NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDA 282 (321)
Q Consensus 204 -~~Dlivlag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~l~~~~~~~INiHpslLP~yrG~~pi~~Ai~~ 282 (321)
++|++||||||+ ||++.|+++|++++|||||||||+|+|.+.+++|+++
T Consensus 78 ~~~dlvvLAGyMr------------------------------IL~~~fl~~~~grIlNIHPSLLP~f~G~h~~~~A~~a 127 (200)
T COG0299 78 YGPDLVVLAGYMR------------------------------ILGPEFLSRFEGRILNIHPSLLPAFPGLHAHEQALEA 127 (200)
T ss_pred cCCCEEEEcchHH------------------------------HcCHHHHHHhhcceEecCcccccCCCCchHHHHHHHc
Confidence 899999999999 9999999999999999999999999999999999999
Q ss_pred CCCeeEEEEEEecCCCCCCCeEEEEEEecCCCCChhhh
Q 020794 283 GVKLIGATSHFVTEELDAGPIIEQMLELLAISFATELM 320 (321)
Q Consensus 283 G~~~~G~TvH~v~~~~D~G~Ii~Q~~~~I~~~~t~~~L 320 (321)
|++.+||||||||+++|+||||.|..+||.++||.|+|
T Consensus 128 G~k~sG~TVH~V~e~vD~GpII~Q~~Vpv~~~Dt~etl 165 (200)
T COG0299 128 GVKVSGCTVHFVTEGVDTGPIIAQAAVPVLPGDTAETL 165 (200)
T ss_pred CCCccCcEEEEEccCCCCCCeEEEEeeeecCCCCHHHH
Confidence 99999999999999999999999999999999999986
No 8
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=100.00 E-value=7.5e-41 Score=301.34 Aligned_cols=159 Identities=34% Similarity=0.544 Sum_probs=147.0
Q ss_pred eeEEEEEeCCchhHHHHHHhhhcCCcCeeEEEEEeCCCCCCCchHHHHHHHcCCCEEEEcCCc----chhHHHHHHHhc-
Q 020794 129 YKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKE----NEREEELLELVQ- 203 (321)
Q Consensus 129 ~rIavl~S~~g~~l~~lL~~~~~~~l~~~i~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~~~~----~~~~~~~~~~l~- 203 (321)
+|||||+||+|+|+++++++++++.++++|++|++|++ ++.+.++|+++|||++.++.+. +..++++.++++
T Consensus 1 ~riail~sg~gs~~~~ll~~~~~~~l~~~I~~vi~~~~---~~~~~~~A~~~gip~~~~~~~~~~~~~~~~~~~~~~l~~ 77 (190)
T TIGR00639 1 KRIVVLISGNGSNLQAIIDACKEGKIPASVVLVISNKP---DAYGLERAAQAGIPTFVLSLKDFPSREAFDQAIIEELRA 77 (190)
T ss_pred CeEEEEEcCCChhHHHHHHHHHcCCCCceEEEEEECCc---cchHHHHHHHcCCCEEEECccccCchhhhhHHHHHHHHh
Confidence 59999999999999999999999999999999999984 4788999999999999876422 122567888886
Q ss_pred -CCCEEEEEeeccccchhhHhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeEEecCCCCCCCCCChHHHHHHHh
Q 020794 204 -NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDA 282 (321)
Q Consensus 204 -~~Dlivlag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~l~~~~~~~INiHpslLP~yrG~~pi~~Ai~~ 282 (321)
++|++|+++|++ |+|+++++.++.++||+|||+||+|||++|++||+.+
T Consensus 78 ~~~D~iv~~~~~~------------------------------il~~~~l~~~~~~~iNiHpslLP~yrG~~p~~~ai~~ 127 (190)
T TIGR00639 78 HEVDLVVLAGFMR------------------------------ILGPTFLSRFAGRILNIHPSLLPAFPGLHAVEQALEA 127 (190)
T ss_pred cCCCEEEEeCcch------------------------------hCCHHHHhhccCCEEEEeCCcccCCCCccHHHHHHHc
Confidence 899999999999 9999999999999999999999999999999999999
Q ss_pred CCCeeEEEEEEecCCCCCCCeEEEEEEecCCCCChhhh
Q 020794 283 GVKLIGATSHFVTEELDAGPIIEQMLELLAISFATELM 320 (321)
Q Consensus 283 G~~~~G~TvH~v~~~~D~G~Ii~Q~~~~I~~~~t~~~L 320 (321)
|++.+|+|+|+|++++|+||||.|+.++|.++||+++|
T Consensus 128 g~~~tGvTih~v~~~~D~G~Ii~q~~~~i~~~dt~~~L 165 (190)
T TIGR00639 128 GVKESGCTVHYVDEEVDTGPIIAQAKVPILPEDTEETL 165 (190)
T ss_pred CCCeEEEEEEEEcCCCcCCCEEEEEEEEcCCCCCHHHH
Confidence 99999999999999999999999999999999999987
No 9
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=100.00 E-value=2.3e-40 Score=301.97 Aligned_cols=158 Identities=25% Similarity=0.461 Sum_probs=144.6
Q ss_pred eEEEEEeCCchhHHHHHHhhhcCCcCeeEEEEEeCCCCCCCchHHHHHHHcCCCEEEEcCCc----chhHHHHHHHhc--
Q 020794 130 KVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKE----NEREEELLELVQ-- 203 (321)
Q Consensus 130 rIavl~S~~g~~l~~lL~~~~~~~l~~~i~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~~~~----~~~~~~~~~~l~-- 203 (321)
||+||+||+|+||++|++++++|+++++|++|+||++ .+.++++|+++|||++.++.+. +..++++.+.++
T Consensus 1 ki~vl~Sg~Gsn~~al~~~~~~~~l~~~i~~visn~~---~~~~~~~A~~~gIp~~~~~~~~~~~~~~~~~~~~~~l~~~ 77 (207)
T PLN02331 1 KLAVFVSGGGSNFRAIHDACLDGRVNGDVVVVVTNKP---GCGGAEYARENGIPVLVYPKTKGEPDGLSPDELVDALRGA 77 (207)
T ss_pred CEEEEEeCCChhHHHHHHHHHcCCCCeEEEEEEEeCC---CChHHHHHHHhCCCEEEeccccCCCcccchHHHHHHHHhc
Confidence 7999999999999999999999999999999999984 6789999999999999877532 123567777776
Q ss_pred CCCEEEEEeeccccchhhHhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeEEecCCCCCCCCCC----hHHHHH
Q 020794 204 NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGG----KPAKQA 279 (321)
Q Consensus 204 ~~Dlivlag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~l~~~~~~~INiHpslLP~yrG~----~pi~~A 279 (321)
++|++|++|||+ +||+++++.++.++||+||||||+|||+ .|++|+
T Consensus 78 ~~Dliv~agy~~------------------------------il~~~~l~~~~~~~iNiHpSLLP~yrG~g~~~~~v~~a 127 (207)
T PLN02331 78 GVDFVLLAGYLK------------------------------LIPVELVRAYPRSILNIHPALLPAFGGKGYYGIKVHKA 127 (207)
T ss_pred CCCEEEEeCcch------------------------------hCCHHHHhhCCCCEEEEeCccccCCCCCCcccchHHHH
Confidence 899999999999 9999999999999999999999999995 788887
Q ss_pred H-HhCCCeeEEEEEEecCCCCCCCeEEEEEEecCCCCChhhh
Q 020794 280 F-DAGVKLIGATSHFVTEELDAGPIIEQMLELLAISFATELM 320 (321)
Q Consensus 280 i-~~G~~~~G~TvH~v~~~~D~G~Ii~Q~~~~I~~~~t~~~L 320 (321)
+ .+|++++|+|+|+|++++|+||||.|+.++|.++||+++|
T Consensus 128 ~i~~g~~~tG~Tvh~v~~~~D~G~Ii~Q~~~~I~~~dt~~~L 169 (207)
T PLN02331 128 VIASGARYSGPTVHFVDEHYDTGRILAQRVVPVLATDTPEEL 169 (207)
T ss_pred HHHcCCCeEEEEEEEECCCCCCCCeEEEEEEecCCCCCHHHH
Confidence 5 5899999999999999999999999999999999999987
No 10
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=100.00 E-value=9.1e-40 Score=296.31 Aligned_cols=160 Identities=38% Similarity=0.548 Sum_probs=146.2
Q ss_pred CeeEEEEEeCCchhHHHHHHhhhcCCcCeeEEEEEeCCCCCCCchHHHHHHHcCCCEEEEcCCc-c---hhHHHHHHHhc
Q 020794 128 KYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKE-N---EREEELLELVQ 203 (321)
Q Consensus 128 ~~rIavl~S~~g~~l~~lL~~~~~~~l~~~i~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~~~~-~---~~~~~~~~~l~ 203 (321)
++|||||+||+|+|+++++++++++.+.++|++|+|+++ ++.+.++|+++|||++.++... . ..++++.+.++
T Consensus 1 m~ki~vl~sg~gs~~~~ll~~~~~~~~~~~I~~vvs~~~---~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~~~~~l~ 77 (200)
T PRK05647 1 MKRIVVLASGNGSNLQAIIDACAAGQLPAEIVAVISDRP---DAYGLERAEAAGIPTFVLDHKDFPSREAFDAALVEALD 77 (200)
T ss_pred CceEEEEEcCCChhHHHHHHHHHcCCCCcEEEEEEecCc---cchHHHHHHHcCCCEEEECccccCchhHhHHHHHHHHH
Confidence 379999999999999999999999998999999999984 5778999999999998866321 1 12456777775
Q ss_pred --CCCEEEEEeeccccchhhHhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeEEecCCCCCCCCCChHHHHHHH
Q 020794 204 --NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFD 281 (321)
Q Consensus 204 --~~Dlivlag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~l~~~~~~~INiHpslLP~yrG~~pi~~Ai~ 281 (321)
++|++|+++|++ |+|+++++.++.++||+|||+||+|||++|++||+.
T Consensus 78 ~~~~D~iv~~~~~~------------------------------ii~~~~l~~~~~~~iNiHpslLP~yrG~~p~~~ai~ 127 (200)
T PRK05647 78 AYQPDLVVLAGFMR------------------------------ILGPTFVSAYEGRIINIHPSLLPSFPGLHTHEQALE 127 (200)
T ss_pred HhCcCEEEhHHhhh------------------------------hCCHHHHhhccCCEEEEeCccccCCCCccHHHHHHH
Confidence 899999999999 999999999999999999999999999999999999
Q ss_pred hCCCeeEEEEEEecCCCCCCCeEEEEEEecCCCCChhhh
Q 020794 282 AGVKLIGATSHFVTEELDAGPIIEQMLELLAISFATELM 320 (321)
Q Consensus 282 ~G~~~~G~TvH~v~~~~D~G~Ii~Q~~~~I~~~~t~~~L 320 (321)
+|++.+|+|+|+|++++|+||||.|+.++|.++||+++|
T Consensus 128 ~g~~~tG~Tvh~~~~~~D~G~Ii~q~~~~i~~~dt~~~L 166 (200)
T PRK05647 128 AGVKVHGCTVHFVDEGLDTGPIIAQAAVPVLAGDTEESL 166 (200)
T ss_pred cCCCeEEEEEEEEcCCCcCCCeEEEEEEecCCCCCHHHH
Confidence 999999999999999999999999999999999999987
No 11
>KOG3076 consensus 5'-phosphoribosylglycinamide formyltransferase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.1e-39 Score=288.99 Aligned_cols=161 Identities=41% Similarity=0.564 Sum_probs=148.9
Q ss_pred CCeeEEEEEeCCchhHHHHHHhhhcCCc--CeeEEEEEeCCCCCCCchHHHHHHHcCCCEEEEcCCcc-hh---HHHHHH
Q 020794 127 PKYKVAVLASKQEHCLVDFLYGWQEGKL--PVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKEN-ER---EEELLE 200 (321)
Q Consensus 127 ~~~rIavl~S~~g~~l~~lL~~~~~~~l--~~~i~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~~~~~-~~---~~~~~~ 200 (321)
++.|++|++||.|+||++|+++.+.|.+ +++|+.|+||+ .++..+++|+.+|||+.+++++.- .| +.++.+
T Consensus 5 ~r~rvavliSGtGsNlqaLid~~r~~~l~~~a~VvlviSnk---~~~~GL~rA~~~gIPt~vip~k~~a~R~~~d~eL~~ 81 (206)
T KOG3076|consen 5 RRARVAVLISGTGSNLQALIDATRDGSLGPNADVVLVISNK---KGVYGLERAADAGIPTLVIPHKRFASREKYDNELAE 81 (206)
T ss_pred cceeEEEEEecCchhHHHHHHhhcCCCcCCCceEEEEEecc---ccchhhhHHHHCCCCEEEeccccccccccCcHHHHH
Confidence 6789999999999999999999999998 79999999998 478999999999999999987421 12 246666
Q ss_pred Hhc--CCCEEEEEeeccccchhhHhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeEEecCCCCCCCCCChHHHH
Q 020794 201 LVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQ 278 (321)
Q Consensus 201 ~l~--~~Dlivlag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~l~~~~~~~INiHpslLP~yrG~~pi~~ 278 (321)
.+. ++|++|+||||+ ||+++|++.|+.++|||||||||+|+|.+++.+
T Consensus 82 ~l~e~~~d~v~lAG~M~------------------------------iLs~~fl~~~~~~iiNIHPaLlpaFkG~~a~k~ 131 (206)
T KOG3076|consen 82 VLLELGTDLVCLAGYMR------------------------------ILSGEFLSQLPKRIINIHPALLPAFKGLHAIKQ 131 (206)
T ss_pred HHHHhCCCEEEehhhHH------------------------------HcCHHHHhhcccceEecccccccccCCchHHHH
Confidence 654 899999999999 999999999999999999999999999999999
Q ss_pred HHHhCCCeeEEEEEEecCCCCCCCeEEEEEEecCCCCChhhh
Q 020794 279 AFDAGVKLIGATSHFVTEELDAGPIIEQMLELLAISFATELM 320 (321)
Q Consensus 279 Ai~~G~~~~G~TvH~v~~~~D~G~Ii~Q~~~~I~~~~t~~~L 320 (321)
|++.|.+.+|||+|||+|++|+|+||.|+.+||.++||+|+|
T Consensus 132 Aleagv~~~GctvHfV~EevD~G~iI~q~~v~V~~~Dt~esl 173 (206)
T KOG3076|consen 132 ALEAGVKLSGCTVHFVIEEVDTGPIIAQMAVPVIPGDTLESL 173 (206)
T ss_pred HHHhccccccceEEEehhhccCCCceEEEeeeecCCCCHHHH
Confidence 999999999999999999999999999999999999999986
No 12
>PLN02285 methionyl-tRNA formyltransferase
Probab=100.00 E-value=7.7e-38 Score=303.17 Aligned_cols=166 Identities=26% Similarity=0.393 Sum_probs=147.9
Q ss_pred CCCCeeEEEEEeCCc--hhHHHHHHhhhcCCcCeeEEEEEeCCCCCC-------CchHHHHHHHcCCCEEEEcCCcchhH
Q 020794 125 IDPKYKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGP-------NSHVIRFLERHGIPYHYLCAKENERE 195 (321)
Q Consensus 125 ~~~~~rIavl~S~~g--~~l~~lL~~~~~~~l~~~i~~Vis~~~~~~-------~~~v~~~a~~~gIP~~~~~~~~~~~~ 195 (321)
.++++||+||||+.. +||++|++.++++..+++|++|+|++++.. .+++.++|+++|||++++....+.++
T Consensus 3 ~~~~~kI~f~Gt~~fa~~~L~~L~~~~~~~~~~~~iv~Vvt~~~~~~gr~~~~~~~pv~~~A~~~gIp~~~v~~~~~~~~ 82 (334)
T PLN02285 3 SGRKKRLVFLGTPEVAATVLDALLDASQAPDSAFEVAAVVTQPPARRGRGRKLMPSPVAQLALDRGFPPDLIFTPEKAGE 82 (334)
T ss_pred CCCccEEEEEECCHHHHHHHHHHHhhhhccCCCCeEEEEEeCCCCcccCCcccCCCHHHHHHHHcCCCcceecCccccCC
Confidence 578999999999985 799999999888887899999999987642 25799999999999764433223344
Q ss_pred HHHHHHhc--CCCEEEEEeeccccchhhHhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeEEecCCCCCCCCCC
Q 020794 196 EELLELVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGG 273 (321)
Q Consensus 196 ~~~~~~l~--~~Dlivlag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~l~~~~~~~INiHpslLP~yrG~ 273 (321)
+++++.++ ++|++|+++|++ |||+++++.++.++||+||||||+|||+
T Consensus 83 ~~~~~~l~~~~~Dliv~~~~~~------------------------------ilp~~~l~~~~~g~iNiHpSLLP~yRG~ 132 (334)
T PLN02285 83 EDFLSALRELQPDLCITAAYGN------------------------------ILPQKFLDIPKLGTVNIHPSLLPLYRGA 132 (334)
T ss_pred HHHHHHHHhhCCCEEEhhHhhh------------------------------hcCHHHHhhccCCEEEEecccccCCCCc
Confidence 56666665 899999999999 9999999999999999999999999999
Q ss_pred hHHHHHHHhCCCeeEEEEEEecCCCCCCCeEEEEEEecCCCCChhhh
Q 020794 274 KPAKQAFDAGVKLIGATSHFVTEELDAGPIIEQMLELLAISFATELM 320 (321)
Q Consensus 274 ~pi~~Ai~~G~~~~G~TvH~v~~~~D~G~Ii~Q~~~~I~~~~t~~~L 320 (321)
+|++|||.+|++++|+|+|+|++++|+||||.|+.++|.++||+++|
T Consensus 133 ~pi~~ai~~G~~~tGvTih~~~~~~D~G~Ii~q~~~~I~~~dt~~~L 179 (334)
T PLN02285 133 APVQRALQDGVNETGVSVAFTVRALDAGPVIAQERVEVDEDIKAPEL 179 (334)
T ss_pred CHHHHHHHcCCCcEEEEEEEECCCccCCCEEEEEEEecCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999987
No 13
>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. Formyltetrahydrofolate dehydrogenase produces formate from formyl- tetrahydrofolate. This is the N-terminal domain of these enzymes and is found upstream of the C-terminal domain (IPR005793 from INTERPRO). The trifunctional glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase catalyses the second, third and fifth steps in de novo purine biosynthesis. The glycinamide ribonucleotide transformylase belongs to this group.; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3P9X_B 3OBI_A 3R8X_A 3KCQ_C 3RFO_D 3AV3_A 3N0V_D 3LOU_A 3O1L_A 4DS3_A ....
Probab=100.00 E-value=4.1e-37 Score=273.41 Aligned_cols=159 Identities=35% Similarity=0.483 Sum_probs=135.7
Q ss_pred eeEEEEEeCCchhHHHHHHhhhcCCcCeeEEEEEeCCCCCCCchHHHHHHHcCCCEEEEcCCc----chhHHHHHHHhc-
Q 020794 129 YKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKE----NEREEELLELVQ- 203 (321)
Q Consensus 129 ~rIavl~S~~g~~l~~lL~~~~~~~l~~~i~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~~~~----~~~~~~~~~~l~- 203 (321)
|||+||+||.+++++.+|++++++...+++++|+|++++ ......+.+.++|...+.... +..++++.+.++
T Consensus 1 mrI~~~~Sg~~~~~~~~l~~l~~~~~~~~iv~Vit~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 77 (181)
T PF00551_consen 1 MRIVFFGSGSGSFLKALLEALKARGHNVEIVLVITNPDK---PRGRSRAIKNGIPAQVADEKNFQPRSENDEELLELLES 77 (181)
T ss_dssp EEEEEEESSSSHHHHHHHHHHHTTSSEEEEEEEEESSTT---THHHHHHHHTTHHEEEHHGGGSSSHHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCHHHHHHHHHHHhCCCCceEEEEeccccc---cccccccccCCCCEEeccccCCCchHhhhhHHHHHHHh
Confidence 799999999999999999999988777899999999864 467899999999998876432 134567888886
Q ss_pred -CCCEEEEEeeccccchhhHhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeEEecCCCCCCCCCChHHHHHHHh
Q 020794 204 -NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDA 282 (321)
Q Consensus 204 -~~Dlivlag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~l~~~~~~~INiHpslLP~yrG~~pi~~Ai~~ 282 (321)
++|++|+++|++ ++|+++++.++.++||+|||+||+|||++|++||+.+
T Consensus 78 ~~~Dl~v~~~~~~------------------------------il~~~~l~~~~~~~iNiHpslLP~yrG~~p~~~ai~~ 127 (181)
T PF00551_consen 78 LNPDLIVVAGYGR------------------------------ILPKEFLSIPPYGIINIHPSLLPKYRGASPIQWAILN 127 (181)
T ss_dssp TT-SEEEESS-SS---------------------------------HHHHHHSTTSEEEEESSSTTTTBSSTHHHHHHHH
T ss_pred hccceeehhhhHH------------------------------HhhhhhhhcccccEEEEeecCCccCCCcchhhhhhcC
Confidence 899999999999 9999999999999999999999999999999999999
Q ss_pred CCCeeEEEEEEecCCCCCCCeEEEEEEecCCCCChhhh
Q 020794 283 GVKLIGATSHFVTEELDAGPIIEQMLELLAISFATELM 320 (321)
Q Consensus 283 G~~~~G~TvH~v~~~~D~G~Ii~Q~~~~I~~~~t~~~L 320 (321)
|++.+|+|+|++++++|+||||.|+.++|.++||.++|
T Consensus 128 g~~~~G~Tvh~~~~~~D~G~Ii~q~~~~i~~~dt~~~l 165 (181)
T PF00551_consen 128 GEKETGVTVHFMDEGLDAGPIIAQKKFPIEPDDTAESL 165 (181)
T ss_dssp TSSEEEEEEEEE-SSTTTSEEEEEEEEE--TT--HHHH
T ss_pred CcceeeeEEEEecccCcCCCeEEEEEEEcCCCCCHHHH
Confidence 99999999999999999999999999999999999987
No 14
>COG0223 Fmt Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.4e-35 Score=279.45 Aligned_cols=154 Identities=27% Similarity=0.346 Sum_probs=138.2
Q ss_pred CeeEEEEEeCCch--hHHHHHHhhhcCCcCeeEEEEEeCCCCCC-------CchHHHHHHHcCCCEEEEcCCcchhHHHH
Q 020794 128 KYKVAVLASKQEH--CLVDFLYGWQEGKLPVEITCVISNHDRGP-------NSHVIRFLERHGIPYHYLCAKENEREEEL 198 (321)
Q Consensus 128 ~~rIavl~S~~g~--~l~~lL~~~~~~~l~~~i~~Vis~~~~~~-------~~~v~~~a~~~gIP~~~~~~~~~~~~~~~ 198 (321)
++||+||++.+.+ +|++|++. +++|++|+|.+|++. .+++.++|.++|||++. +.+ .+.+++
T Consensus 1 ~mkivF~GTp~fa~~~L~~L~~~------~~eivaV~Tqpdkp~gR~~~l~~spVk~~A~~~~ipv~q-P~~--l~~~e~ 71 (307)
T COG0223 1 MMRIVFFGTPEFAVPSLEALIEA------GHEIVAVVTQPDKPAGRGKKLTPSPVKRLALELGIPVFQ-PEK--LNDPEF 71 (307)
T ss_pred CcEEEEEcCchhhHHHHHHHHhC------CCceEEEEeCCCCccCCCCcCCCChHHHHHHHcCCceec-ccc--CCcHHH
Confidence 4799999999875 68888873 389999999998764 37999999999999774 443 333466
Q ss_pred HHHhc--CCCEEEEEeeccccchhhHhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeEEecCCCCCCCCCChHH
Q 020794 199 LELVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPA 276 (321)
Q Consensus 199 ~~~l~--~~Dlivlag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~l~~~~~~~INiHpslLP~yrG~~pi 276 (321)
.+.++ ++|++|++.|++ |||+++|+.++++|||+||||||+|||+.|+
T Consensus 72 ~~~l~~l~~D~ivvvayG~------------------------------ilp~~iL~~~~~G~iNvH~SLLPr~RGaAPI 121 (307)
T COG0223 72 LEELAALDPDLIVVVAYGQ------------------------------ILPKEILDLPPYGCINLHPSLLPRYRGAAPI 121 (307)
T ss_pred HHHHhccCCCEEEEEehhh------------------------------hCCHHHHhcCcCCeEEecCccCccccCccHH
Confidence 66665 899999999999 9999999999999999999999999999999
Q ss_pred HHHHHhCCCeeEEEEEEecCCCCCCCeEEEEEEecCCCCChhhh
Q 020794 277 KQAFDAGVKLIGATSHFVTEELDAGPIIEQMLELLAISFATELM 320 (321)
Q Consensus 277 ~~Ai~~G~~~~G~TvH~v~~~~D~G~Ii~Q~~~~I~~~~t~~~L 320 (321)
+|||.+|+++||+|+|+|++++|+|||+.|+.++|.+.||+.+|
T Consensus 122 q~aI~~Gd~~TGvTim~M~~~lDaG~Il~q~~~~I~~~dta~~L 165 (307)
T COG0223 122 QWAILNGDTETGVTIMQMDEGLDAGDILAQREVPIEPDDTAGSL 165 (307)
T ss_pred HHHHHcCCcccceEEEEccccCCCcceeeeEEeccCCcccHHHH
Confidence 99999999999999999999999999999999999999999987
No 15
>PRK06988 putative formyltransferase; Provisional
Probab=100.00 E-value=8.9e-34 Score=272.30 Aligned_cols=154 Identities=25% Similarity=0.353 Sum_probs=135.6
Q ss_pred CeeEEEEEeCCc--hhHHHHHHhhhcCCcCeeEEEEEeCCCCCC----CchHHHHHHHcCCCEEEEcCCcchhHHHHHHH
Q 020794 128 KYKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGP----NSHVIRFLERHGIPYHYLCAKENEREEELLEL 201 (321)
Q Consensus 128 ~~rIavl~S~~g--~~l~~lL~~~~~~~l~~~i~~Vis~~~~~~----~~~v~~~a~~~gIP~~~~~~~~~~~~~~~~~~ 201 (321)
+|||+||+|+.. .||++|++. .++|++|+|+++++. ..++.++|+++|||++... +.+++++.+.
T Consensus 2 ~mkIvf~Gs~~~a~~~L~~L~~~------~~~i~~Vvt~~d~~~~~~~~~~v~~~A~~~gip~~~~~---~~~~~~~~~~ 72 (312)
T PRK06988 2 KPRAVVFAYHNVGVRCLQVLLAR------GVDVALVVTHEDNPTENIWFGSVAAVAAEHGIPVITPA---DPNDPELRAA 72 (312)
T ss_pred CcEEEEEeCcHHHHHHHHHHHhC------CCCEEEEEcCCCCCccCcCCCHHHHHHHHcCCcEEccc---cCCCHHHHHH
Confidence 479999999984 589988863 378999999986542 3589999999999998522 2233456666
Q ss_pred hc--CCCEEEEEeeccccchhhHhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeEEecCCCCCCCCCChHHHHH
Q 020794 202 VQ--NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQA 279 (321)
Q Consensus 202 l~--~~Dlivlag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~l~~~~~~~INiHpslLP~yrG~~pi~~A 279 (321)
++ ++|++|+++|++ |||+++++.++.++||+||||||+|||++|++||
T Consensus 73 l~~~~~Dliv~~~~~~------------------------------iip~~il~~~~~g~iNiHpslLP~yRG~~pi~~a 122 (312)
T PRK06988 73 VAAAAPDFIFSFYYRH------------------------------MIPVDLLALAPRGAYNMHGSLLPKYRGRVPVNWA 122 (312)
T ss_pred HHhcCCCEEEEehhcc------------------------------ccCHHHHhcCCCCEEEeeCccccCCCCcCHHHHH
Confidence 65 899999999999 9999999999999999999999999999999999
Q ss_pred HHhCCCeeEEEEEEecCCCCCCCeEEEEEEecCCCCChhhh
Q 020794 280 FDAGVKLIGATSHFVTEELDAGPIIEQMLELLAISFATELM 320 (321)
Q Consensus 280 i~~G~~~~G~TvH~v~~~~D~G~Ii~Q~~~~I~~~~t~~~L 320 (321)
|.+|++++|+|+|+|++++|+|||+.|+.++|.++||+++|
T Consensus 123 i~~g~~~tGvTih~~~~~~D~G~Il~q~~~~I~~~dt~~~L 163 (312)
T PRK06988 123 VLNGETETGATLHEMVAKPDAGAIVDQTAVPILPDDTAAQV 163 (312)
T ss_pred HHcCCCceEEEEEEECCCCCCCCeEEEEEEecCCCCCHHHH
Confidence 99999999999999999999999999999999999999987
No 16
>TIGR00460 fmt methionyl-tRNA formyltransferase. The top-scoring characterized proteins other than methionyl-tRNA formyltransferase (fmt) itself are formyltetrahydrofolate dehydrogenases. The mitochondrial methionyl-tRNA formyltransferases are so divergent that, in a multiple alignment of bacterial fmt, mitochondrial fmt, and formyltetrahydrofolate dehydrogenases, the mitochondrial fmt appears the most different. However, because both bacterial and mitochondrial fmt are included in the seed alignment, all credible fmt sequences score higher than any non-fmt sequence. This enzyme modifies Met on initiator tRNA to f-Met.
Probab=100.00 E-value=2.5e-33 Score=269.13 Aligned_cols=153 Identities=25% Similarity=0.382 Sum_probs=133.9
Q ss_pred eeEEEEEeCCc--hhHHHHHHhhhcCCcCeeEEEEEeCCCCCC-------CchHHHHHHHcCCCEEEEcCCcchhHHHHH
Q 020794 129 YKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGP-------NSHVIRFLERHGIPYHYLCAKENEREEELL 199 (321)
Q Consensus 129 ~rIavl~S~~g--~~l~~lL~~~~~~~l~~~i~~Vis~~~~~~-------~~~v~~~a~~~gIP~~~~~~~~~~~~~~~~ 199 (321)
|||+||+|+.. .+|++|++. +++|++|+|++++.. ..++.++|+++|||++..... +.++.+
T Consensus 1 mkIvf~Gs~~~a~~~L~~L~~~------~~~i~~Vvt~pd~~~~r~~~~~~~~v~~~A~~~~Ipv~~~~~~---~~~~~~ 71 (313)
T TIGR00460 1 LRIVFFGTPTFSLPVLEELRED------NFEVVGVVTQPDKPAGRGKKLTPPPVKVLAEEKGIPVFQPEKQ---RQLEEL 71 (313)
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCcEEEEEcCCCCccCCCCCCCCChHHHHHHHcCCCEEecCCC---CcHHHH
Confidence 69999999986 578888763 379999999886531 367999999999999864432 223455
Q ss_pred HHhc--CCCEEEEEeeccccchhhHhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeEEecCCCCCCCCCChHHH
Q 020794 200 ELVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAK 277 (321)
Q Consensus 200 ~~l~--~~Dlivlag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~l~~~~~~~INiHpslLP~yrG~~pi~ 277 (321)
+.++ ++|++|+++|++ |||+++++.++.++||+|||+||+|||++|++
T Consensus 72 ~~l~~~~~Dliv~~~~~~------------------------------iip~~il~~~~~g~iNiHpSlLP~yRG~~pi~ 121 (313)
T TIGR00460 72 PLVRELKPDVIVVVSFGK------------------------------ILPKEFLDLFPYGCINVHPSLLPRWRGGAPIQ 121 (313)
T ss_pred HHHHhhCCCEEEEccchh------------------------------hCCHHHHhhccCCEEEecCccccCCCCccHHH
Confidence 5554 899999999999 99999999999999999999999999999999
Q ss_pred HHHHhCCCeeEEEEEEecCCCCCCCeEEEEEEecCCCCChhhh
Q 020794 278 QAFDAGVKLIGATSHFVTEELDAGPIIEQMLELLAISFATELM 320 (321)
Q Consensus 278 ~Ai~~G~~~~G~TvH~v~~~~D~G~Ii~Q~~~~I~~~~t~~~L 320 (321)
|||.+|++++|+|+|+|++++|+|||+.|+.++|.+++|+++|
T Consensus 122 wai~~G~~~tGvTih~~~~~~D~G~Ii~q~~~~I~~~~t~~~l 164 (313)
T TIGR00460 122 RAILNGDKKTGVTIMQMVPKMDAGDILKQETFPIEEEDNSGTL 164 (313)
T ss_pred HHHHCCCCeEEEEEEEEccccCCCCeEEEEEEEeCCCCCHHHH
Confidence 9999999999999999999999999999999999999999987
No 17
>PRK00005 fmt methionyl-tRNA formyltransferase; Reviewed
Probab=100.00 E-value=2.7e-33 Score=268.17 Aligned_cols=153 Identities=26% Similarity=0.350 Sum_probs=134.4
Q ss_pred eeEEEEEeCCc--hhHHHHHHhhhcCCcCeeEEEEEeCCCCCC-------CchHHHHHHHcCCCEEEEcCCcchhHHHHH
Q 020794 129 YKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGP-------NSHVIRFLERHGIPYHYLCAKENEREEELL 199 (321)
Q Consensus 129 ~rIavl~S~~g--~~l~~lL~~~~~~~l~~~i~~Vis~~~~~~-------~~~v~~~a~~~gIP~~~~~~~~~~~~~~~~ 199 (321)
|||+||+|+.. .||+.|++. .+++++|+|.++++. .+++.++|+++|||++.... .+++++.
T Consensus 1 mkIvf~G~~~~a~~~L~~L~~~------~~~i~~Vvt~~~~~~~r~~~~~~~~v~~~a~~~~Ip~~~~~~---~~~~~~~ 71 (309)
T PRK00005 1 MRIVFMGTPEFAVPSLKALLES------GHEVVAVVTQPDRPAGRGKKLTPSPVKQLALEHGIPVLQPEK---LRDPEFL 71 (309)
T ss_pred CEEEEECCCHHHHHHHHHHHHC------CCcEEEEECCCCCCCCCCCCCCCCHHHHHHHHcCCCEECcCC---CCCHHHH
Confidence 69999999886 578888763 378999999876431 35899999999999975332 2244566
Q ss_pred HHhc--CCCEEEEEeeccccchhhHhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeEEecCCCCCCCCCChHHH
Q 020794 200 ELVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAK 277 (321)
Q Consensus 200 ~~l~--~~Dlivlag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~l~~~~~~~INiHpslLP~yrG~~pi~ 277 (321)
+.++ ++|++|+++|++ |||+++++.++.++||+|||+||+|||++|++
T Consensus 72 ~~l~~~~~Dliv~~~~~~------------------------------iip~~il~~~~~g~iNiHpslLP~yRG~~pi~ 121 (309)
T PRK00005 72 AELAALNADVIVVVAYGQ------------------------------ILPKAVLDIPRLGCINLHASLLPRWRGAAPIQ 121 (309)
T ss_pred HHHHhcCcCEEEEehhhc------------------------------ccCHHHHhcCCCCEEEEeCcccccCCCccHHH
Confidence 6665 899999999999 99999999999999999999999999999999
Q ss_pred HHHHhCCCeeEEEEEEecCCCCCCCeEEEEEEecCCCCChhhh
Q 020794 278 QAFDAGVKLIGATSHFVTEELDAGPIIEQMLELLAISFATELM 320 (321)
Q Consensus 278 ~Ai~~G~~~~G~TvH~v~~~~D~G~Ii~Q~~~~I~~~~t~~~L 320 (321)
|||.+|++.+|+|+|+|++++|+|||+.|+.++|.+++|.++|
T Consensus 122 wai~~g~~~~GvTih~~~~~~D~G~Ii~q~~~~i~~~dt~~~L 164 (309)
T PRK00005 122 RAIIAGDAETGVTIMQMDEGLDTGDMLLKAEVPITPTDTAGEL 164 (309)
T ss_pred HHHHcCCCeEEEEEEEECCcccCCCEEEEEEEEeCCCCCHHHH
Confidence 9999999999999999999999999999999999999999987
No 18
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=99.97 E-value=1e-30 Score=271.90 Aligned_cols=153 Identities=24% Similarity=0.284 Sum_probs=134.4
Q ss_pred eeEEEEEeCCc--hhHHHHHHhhhcCCcCeeEEEEEeCCCCCC----CchHHHHHHHcCCCEEEEcCCcchhHHHHHHHh
Q 020794 129 YKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGP----NSHVIRFLERHGIPYHYLCAKENEREEELLELV 202 (321)
Q Consensus 129 ~rIavl~S~~g--~~l~~lL~~~~~~~l~~~i~~Vis~~~~~~----~~~v~~~a~~~gIP~~~~~~~~~~~~~~~~~~l 202 (321)
|||+||+|+.. .+|++|++. .++|++|+|.++++. .+++.++|+++|||++.... .+++++.+.+
T Consensus 1 mkivf~g~~~~a~~~l~~L~~~------~~~i~~V~t~pd~~~~~~~~~~v~~~a~~~~ip~~~~~~---~~~~~~~~~l 71 (660)
T PRK08125 1 MKAVVFAYHDIGCVGIEALLAA------GYEIAAVFTHTDNPGENHFFGSVARLAAELGIPVYAPED---VNHPLWVERI 71 (660)
T ss_pred CeEEEECCCHHHHHHHHHHHHC------CCcEEEEEeCCCCCcCCCCcCHHHHHHHHcCCcEEeeCC---CCcHHHHHHH
Confidence 69999998876 468888763 378999999877532 34799999999999986432 2334556666
Q ss_pred c--CCCEEEEEeeccccchhhHhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeEEecCCCCCCCCCChHHHHHH
Q 020794 203 Q--NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAF 280 (321)
Q Consensus 203 ~--~~Dlivlag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~l~~~~~~~INiHpslLP~yrG~~pi~~Ai 280 (321)
+ ++|++|+++|++ |||+++++.++.++||+||||||+|||++|++|||
T Consensus 72 ~~~~~D~iv~~~~~~------------------------------ii~~~il~~~~~g~iN~H~slLP~yRG~~p~~wai 121 (660)
T PRK08125 72 RELAPDVIFSFYYRN------------------------------LLSDEILQLAPAGAFNLHGSLLPKYRGRAPLNWVL 121 (660)
T ss_pred HhcCCCEEEEccccc------------------------------cCCHHHHhhcCCCEEEEeCCcccCCCCcCHHHHHH
Confidence 5 899999999999 99999999999999999999999999999999999
Q ss_pred HhCCCeeEEEEEEecCCCCCCCeEEEEEEecCCCCChhhh
Q 020794 281 DAGVKLIGATSHFVTEELDAGPIIEQMLELLAISFATELM 320 (321)
Q Consensus 281 ~~G~~~~G~TvH~v~~~~D~G~Ii~Q~~~~I~~~~t~~~L 320 (321)
.+|++.+|+|+|+|++++|+||||.|+.++|.++||+++|
T Consensus 122 ~~g~~~~GvTi~~~~~~~D~G~I~~q~~~~i~~~dt~~~l 161 (660)
T PRK08125 122 VNGETETGVTLHRMVKRADAGAIVAQQRVAIAPDDTALTL 161 (660)
T ss_pred HcCCCcEEEEEEEECCCccCCCeeEEEEEecCCCCCHHHH
Confidence 9999999999999999999999999999999999999887
No 19
>PRK07579 hypothetical protein; Provisional
Probab=99.96 E-value=2.6e-29 Score=234.29 Aligned_cols=145 Identities=26% Similarity=0.344 Sum_probs=122.1
Q ss_pred CeeEEEEEeCCc--hhHHHHHHhhhcCCcCeeEEEEEeCCCCCCCchHHHHHH-HcCCCEEEEcCCcchhHHHHHHHhcC
Q 020794 128 KYKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLE-RHGIPYHYLCAKENEREEELLELVQN 204 (321)
Q Consensus 128 ~~rIavl~S~~g--~~l~~lL~~~~~~~l~~~i~~Vis~~~~~~~~~v~~~a~-~~gIP~~~~~~~~~~~~~~~~~~l~~ 204 (321)
++||.|++.+.- .|++.|+.+ .+.++.++.+|.++.+. +++ -+++|.+.++- ...+.+++.+
T Consensus 1 ~k~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~-----~~~~~~~~~~ 65 (245)
T PRK07579 1 MKTILVLTDNVHAHALAVDLIAR--KNDMDVDYFCSFKSQTS--------FAKEIYQSPIKQLDV-----AERVAEIVER 65 (245)
T ss_pred CceEEEEcccHHHHHHHHHHHhh--ccCcceEEEEeccCCcc--------cccccccccccCcch-----hhhHHhhhcC
Confidence 479999998863 799999987 34678999999988743 222 34555443331 2346666668
Q ss_pred CCEEEEEeeccccchhhHhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeEEecCCCCCCCCCChHHHHHHHhCC
Q 020794 205 TDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGV 284 (321)
Q Consensus 205 ~Dlivlag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~l~~~~~~~INiHpslLP~yrG~~pi~~Ai~~G~ 284 (321)
+|++|+++|+| |||+++++.+ ++||+||||||+|||++|++|||.+|+
T Consensus 66 ~DliVvvayg~------------------------------ilp~~iL~~~--~~iNiHpSLLP~yRGaaPi~wAI~nGe 113 (245)
T PRK07579 66 YDLVLSFHCKQ------------------------------RFPAKLVNGV--RCINIHPGFNPYNRGWFPQVFSIINGL 113 (245)
T ss_pred CCEEEEchhhc------------------------------cCCHHHHhhC--CEEEEcCCcCCCCCCcCHHHHHHHCCC
Confidence 99999999999 9999999976 599999999999999999999999998
Q ss_pred CeeEEEEEEecCCCCCCCeEEEEEEecCCCCChhhh
Q 020794 285 KLIGATSHFVTEELDAGPIIEQMLELLAISFATELM 320 (321)
Q Consensus 285 ~~~G~TvH~v~~~~D~G~Ii~Q~~~~I~~~~t~~~L 320 (321)
+ +|+|+|+|++++|+||||.|+.++|.++||+++|
T Consensus 114 ~-tGvTih~mde~lDtGdIi~Q~~v~I~~~dt~~sL 148 (245)
T PRK07579 114 K-IGATIHEMDEQLDHGPIIAQREVEIESWDSSGSV 148 (245)
T ss_pred e-EEEEEEEEcCCCCCCCeeEEEEEEcCCCCCHHHH
Confidence 5 9999999999999999999999999999999987
No 20
>KOG3082 consensus Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.80 E-value=6.8e-20 Score=174.08 Aligned_cols=152 Identities=22% Similarity=0.296 Sum_probs=116.2
Q ss_pred CeeEEEEEeCCchh--HHHHHHhhhcCCcCeeEEEEEeCCCCC-------CCchHHHHHHHcCCCEEEEcCCcchhHHHH
Q 020794 128 KYKVAVLASKQEHC--LVDFLYGWQEGKLPVEITCVISNHDRG-------PNSHVIRFLERHGIPYHYLCAKENEREEEL 198 (321)
Q Consensus 128 ~~rIavl~S~~g~~--l~~lL~~~~~~~l~~~i~~Vis~~~~~-------~~~~v~~~a~~~gIP~~~~~~~~~~~~~~~ 198 (321)
++.+-+++|...++ ++.+... .+.+.+++.++.. ..+|+...|...|.++..+-.... ...
T Consensus 6 ~~nv~~~~sd~~~~~~~~~l~~~-------~~~~~iv~~pp~~~~~~k~~lpsP~a~~a~~k~la~~kl~p~~k-~~~-- 75 (338)
T KOG3082|consen 6 PLNVIFLGSDEFSIPILRKLIGC-------VQRVRIVSAPPKRQSRRKEILPSPAAMEANAKGLAYIKLQPGWK-NFH-- 75 (338)
T ss_pred ccCcchhccccccchhhhhHHHH-------HHhhhhccCCcchhhccCccCCCccccccccccceeeeccChhh-ccc--
Confidence 45667777777653 4445442 2333444443211 135667777788888765432110 001
Q ss_pred HHHhc-CCCEEEEEeeccccchhhHhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeEEecCCCCCCCCCChHHH
Q 020794 199 LELVQ-NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAK 277 (321)
Q Consensus 199 ~~~l~-~~Dlivlag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~l~~~~~~~INiHpslLP~yrG~~pi~ 277 (321)
++.. ..|++|+|+|++ +||.+++..+|+++||+||||||+|||+.|++
T Consensus 76 -d~~~~~~~l~ItaSfGr------------------------------llp~kll~~~pyg~iNVHPSLLPk~RGaAPV~ 124 (338)
T KOG3082|consen 76 -DLMRPDDQLAITASFGR------------------------------LLPFKLLNQLPYGGINVHPSLLPKYRGAAPVQ 124 (338)
T ss_pred -cccCCCcceEEEeehhc------------------------------cCcHHHHhhCCcceeecChhhcccccCcchHH
Confidence 2223 688999999999 99999999999999999999999999999999
Q ss_pred HHHHhCCCeeEEEEEEecC-CCCCCCeEEEEEEecCCCCChhhh
Q 020794 278 QAFDAGVKLIGATSHFVTE-ELDAGPIIEQMLELLAISFATELM 320 (321)
Q Consensus 278 ~Ai~~G~~~~G~TvH~v~~-~~D~G~Ii~Q~~~~I~~~~t~~~L 320 (321)
+|+++|++.||||+..++. .+|.||||+|+.++|++..|..+|
T Consensus 125 ~all~GD~~TGVTI~~i~p~rFD~G~ilAQ~~l~v~~~~t~~~L 168 (338)
T KOG3082|consen 125 RALLNGDTLTGVTIQTIDPKRFDKGPILAQEYLAVNPKETAPEL 168 (338)
T ss_pred HHHhcCCcccceEEEEecccccccccceecceeccCccccchHH
Confidence 9999999999999999998 799999999999999999998876
No 21
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=99.76 E-value=3.6e-18 Score=132.53 Aligned_cols=70 Identities=16% Similarity=0.140 Sum_probs=65.5
Q ss_pred cEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHHHHHhhh
Q 020794 42 HGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNA 115 (321)
Q Consensus 42 ~~Iltv~G~Dr~GIVA~VS~~La~~G~NI~d~~q~~~~l~g~F~Mr~~v~~~~~~~~~~~L~~~L~~la~~lg~ 115 (321)
++|||++|||||||||+||++|+++||||+|++|+. .+|.|+||++++.+. .+.++|+++|+++++++|+
T Consensus 1 ~~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~--~~~~F~m~~~~~~~~--~~~~~l~~~l~~~~~~~~l 70 (77)
T cd04893 1 HLVISALGTDRPGILNELTRAVSESGCNILDSRMAI--LGTEFALTMLVEGSW--DAIAKLEAALPGLARRLDL 70 (77)
T ss_pred CEEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeE--EcCEEEEEEEEEecc--ccHHHHHHHHHHHHHHcCC
Confidence 479999999999999999999999999999999997 499999999999874 4789999999999999987
No 22
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=99.72 E-value=7.5e-18 Score=134.90 Aligned_cols=75 Identities=20% Similarity=0.143 Sum_probs=71.4
Q ss_pred cccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHHHHHhhhc
Q 020794 40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAM 116 (321)
Q Consensus 40 ~~~~Iltv~G~Dr~GIVA~VS~~La~~G~NI~d~~q~~~~l~g~F~Mr~~v~~~~~~~~~~~L~~~L~~la~~lg~~ 116 (321)
.+++++||+|+|||||||+||+.|+++|+||+|++|+++ +|+|+|.|.+++++...+.++++++|++.++++|+.
T Consensus 1 ~~~avITV~GkDr~GIva~is~vLAe~~vNIldisQtvm--~~~ftm~~lV~~~~~~~d~~~lr~~l~~~~~~lgv~ 75 (90)
T COG3830 1 KMRAVITVIGKDRVGIVAAVSRVLAEHGVNILDISQTVM--DGFFTMIMLVDISKEVVDFAALRDELAAEGKKLGVD 75 (90)
T ss_pred CceEEEEEEcCCCCchhHHHHHHHHHcCCcEEEHHHHHH--hhhceeeeEEcCChHhccHHHHHHHHHHHHHhcCcE
Confidence 368999999999999999999999999999999999987 899999999999988899999999999999999973
No 23
>KOG2452 consensus Formyltetrahydrofolate dehydrogenase [Nucleotide transport and metabolism]
Probab=99.67 E-value=6.3e-17 Score=161.29 Aligned_cols=157 Identities=18% Similarity=0.198 Sum_probs=126.4
Q ss_pred eeEEEEEeCC-chhHHHHHHhhhcCCcCeeEEEEEeCCCCCC-CchHHHHHHHcCCCEEEEcC--CcchhHHHHHHHhc-
Q 020794 129 YKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGP-NSHVIRFLERHGIPYHYLCA--KENEREEELLELVQ- 203 (321)
Q Consensus 129 ~rIavl~S~~-g~~l~~lL~~~~~~~l~~~i~~Vis~~~~~~-~~~v~~~a~~~gIP~~~~~~--~~~~~~~~~~~~l~- 203 (321)
|||||++-.- |.....-|. ++ .++|++|++-++... ..++.--|++-|+|++...+ +.+..-++++++.+
T Consensus 1 mkiaiigqs~fg~~vy~~lr--k~---gheiv~vftipdk~g~~d~l~~ea~kdgvpv~k~srwr~k~~~lp~~~~~y~~ 75 (881)
T KOG2452|consen 1 MKIAVIGQSLFGQEVYCHLR--KE---GHEVVGVFTVPDKDGKADPLGLEAEKDGVPVFKYSRWRAKAQALPDVVAKYQA 75 (881)
T ss_pred CeeEEechhhhhHHHHHHHH--hc---CceEEEEEEecCCCCCcCcccccccccCcceechhhhhhhccccHHHHHHHHh
Confidence 6899988433 333222222 23 389999999887543 34555667889999987553 22223356777665
Q ss_pred -CCCEEEEEeeccccchhhHhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeEEecCCCCCCCCCChHHHHHHHh
Q 020794 204 -NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDA 282 (321)
Q Consensus 204 -~~Dlivlag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~l~~~~~~~INiHpslLP~yrG~~pi~~Ai~~ 282 (321)
.+++-|+--..| ++|-++.+.+.++.|-.|||+||+.||++++.|.+..
T Consensus 76 ~gaelnvlpfcsq------------------------------fip~ei~~ap~~~siiyhps~lp~hrgasainwtli~ 125 (881)
T KOG2452|consen 76 LGAELNVLPFCSQ------------------------------FIPMEIISAPRHGSIIYHPSLLPRHRGASAINWTLIH 125 (881)
T ss_pred hcccccccchhhh------------------------------ccchhhcccccCCceeeccccCccccCccccceEEEe
Confidence 789988887777 8999999999999999999999999999999999999
Q ss_pred CCCeeEEEEEEecCCCCCCCeEEEEEEecCCCCChhhh
Q 020794 283 GVKLIGATSHFVTEELDAGPIIEQMLELLAISFATELM 320 (321)
Q Consensus 283 G~~~~G~TvH~v~~~~D~G~Ii~Q~~~~I~~~~t~~~L 320 (321)
|+++.|.++++.|.++|+|||+.|+.+.+.++||..+|
T Consensus 126 gd~~~g~sifwaddgldtg~~llqk~c~v~~~dt~~tl 163 (881)
T KOG2452|consen 126 GDKKGGFSIFWADDGLDTGDLLLQKECEVLPDDTVSTL 163 (881)
T ss_pred ccccCceEEEeecCCccccchhhhhhcccCCCccHHHH
Confidence 99999999999999999999999999999999999876
No 24
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.65 E-value=8.4e-16 Score=117.45 Aligned_cols=72 Identities=35% Similarity=0.644 Sum_probs=66.5
Q ss_pred EEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHHHHHhhh
Q 020794 44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNA 115 (321)
Q Consensus 44 Iltv~G~Dr~GIVA~VS~~La~~G~NI~d~~q~~~~l~g~F~Mr~~v~~~~~~~~~~~L~~~L~~la~~lg~ 115 (321)
|++++|+||||||++||++|+++||||++++|+.+..++.|+|++++++|..+.+.++|+++|+++++++++
T Consensus 1 ii~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~ 72 (74)
T cd04875 1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDPDSGRFFMRVEFELEGFDLSREALEAAFAPVAAEFDM 72 (74)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeecCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHHHcCC
Confidence 689999999999999999999999999999999877789999999999986446799999999999999875
No 25
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.61 E-value=2.4e-15 Score=118.88 Aligned_cols=72 Identities=21% Similarity=0.181 Sum_probs=66.6
Q ss_pred cEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHHHHHhhh
Q 020794 42 HGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNA 115 (321)
Q Consensus 42 ~~Iltv~G~Dr~GIVA~VS~~La~~G~NI~d~~q~~~~l~g~F~Mr~~v~~~~~~~~~~~L~~~L~~la~~lg~ 115 (321)
+++++++|+||||||++||++|+++||||++++|+.. ++.|+|++++++|....+.++|+++|.++++++++
T Consensus 1 ~~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~--~~~f~~~~~v~~~~~~~~~~~L~~~l~~l~~~~~l 72 (88)
T cd04872 1 KAVITVVGKDRVGIVAGVSTKLAELNVNILDISQTIM--DGYFTMIMIVDISESNLDFAELQEELEELGKELGV 72 (88)
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhh--CCccEEEEEEEeCCCCCCHHHHHHHHHHHHHHcCC
Confidence 5899999999999999999999999999999999974 89999999999985346799999999999999986
No 26
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=99.59 E-value=2.7e-15 Score=115.97 Aligned_cols=71 Identities=20% Similarity=0.180 Sum_probs=62.5
Q ss_pred ccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHHHHHhhh
Q 020794 41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNA 115 (321)
Q Consensus 41 ~~~Iltv~G~Dr~GIVA~VS~~La~~G~NI~d~~q~~~~l~g~F~Mr~~v~~~~~~~~~~~L~~~L~~la~~lg~ 115 (321)
++++||+.|+||||||++||+.|+++||||+|++|... +|.|.|.+.++.++. +.++|+++|.++++++|+
T Consensus 1 ~~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~--~~~f~~~~~v~~~~~--~~~~l~~~L~~l~~~~~l 71 (76)
T PF13740_consen 1 EQLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVL--GGRFTLIMLVSIPED--SLERLESALEELAEELGL 71 (76)
T ss_dssp EEEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEE--TTEEEEEEEEEESHH--HHHHHHHHHHHHHHHTT-
T ss_pred CEEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEE--cCeEEEEEEEEeCcc--cHHHHHHHHHHHHHHCCc
Confidence 36899999999999999999999999999999999965 899999999999853 789999999999999986
No 27
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.58 E-value=7e-15 Score=113.04 Aligned_cols=69 Identities=17% Similarity=0.177 Sum_probs=63.8
Q ss_pred EEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHHHHHhhh
Q 020794 44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNA 115 (321)
Q Consensus 44 Iltv~G~Dr~GIVA~VS~~La~~G~NI~d~~q~~~~l~g~F~Mr~~v~~~~~~~~~~~L~~~L~~la~~lg~ 115 (321)
++|+.|+||||||++||++|+++||||+|++|... +|.|.|.+.+++|. ..+.++|+++|+++++++|+
T Consensus 1 ~vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~--~~~f~~~~~v~~p~-~~~~~~l~~~l~~l~~~l~l 69 (75)
T cd04870 1 LITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVI--HGRLSLGILVQIPD-SADSEALLKDLLFKAHELGL 69 (75)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEE--cCeeEEEEEEEcCC-CCCHHHHHHHHHHHHHHcCc
Confidence 58999999999999999999999999999998865 78999999999986 36799999999999999886
No 28
>PRK00194 hypothetical protein; Validated
Probab=99.57 E-value=4e-15 Score=117.62 Aligned_cols=74 Identities=22% Similarity=0.181 Sum_probs=67.7
Q ss_pred ccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHHHHHhhhc
Q 020794 41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAM 116 (321)
Q Consensus 41 ~~~Iltv~G~Dr~GIVA~VS~~La~~G~NI~d~~q~~~~l~g~F~Mr~~v~~~~~~~~~~~L~~~L~~la~~lg~~ 116 (321)
+++++|+.|+||||||++||++|+++|+||++++++.. .|.|+|++.++++....+.+.|+++|.++++++|+.
T Consensus 2 ~~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~l~~l~~~~~~~ 75 (90)
T PRK00194 2 MKAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIM--DGYFTMIMLVDISESKKDFAELKEELEELGKELGVK 75 (90)
T ss_pred ceEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhh--CCeeEEEEEEEecCCCCCHHHHHHHHHHHHHHcCCE
Confidence 48999999999999999999999999999999999964 899999999999864457899999999999999863
No 29
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=99.55 E-value=3.7e-14 Score=128.31 Aligned_cols=98 Identities=13% Similarity=0.043 Sum_probs=76.6
Q ss_pred CCcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHHHHHhhhcc
Q 020794 38 PTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMR 117 (321)
Q Consensus 38 ~~~~~~Iltv~G~Dr~GIVA~VS~~La~~G~NI~d~~q~~~~l~g~F~Mr~~v~~~~~~~~~~~L~~~L~~la~~lg~~~ 117 (321)
|-.+++|||++|+|||||||+||+.|+++||||+|++|+.. +|.|+|+|.++.+.. ..+.|+++|..++++.|+.-
T Consensus 4 ~m~~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~l--gg~Fa~i~lvs~~~~--~~~~le~~L~~l~~~~~L~i 79 (190)
T PRK11589 4 SSQHYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAML--GEEFTFIMLLSGSWN--AITLIESTLPLKGAELDLLI 79 (190)
T ss_pred CcccEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhh--CCceEEEEEEeCChh--HHHHHHHHHHhhhhhcCeEE
Confidence 34578999999999999999999999999999999999954 999999999987653 78999999999998877632
Q ss_pred ceeeeCCC----C--CCeeEEEEEeCCch
Q 020794 118 SVVRVPDI----D--PKYKVAVLASKQEH 140 (321)
Q Consensus 118 ~~~r~~~~----~--~~~rIavl~S~~g~ 140 (321)
.++.... . .++.|-|.+.....
T Consensus 80 -~v~~~~~~~~~~~~~~~~v~v~G~DrPG 107 (190)
T PRK11589 80 -VMKRTTARPRPAMPATVWVQVEVADSPH 107 (190)
T ss_pred -EEEeccccccccCCceEEEEEEECCCCC
Confidence 2322111 1 12566666665543
No 30
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=99.52 E-value=7e-14 Score=107.64 Aligned_cols=71 Identities=17% Similarity=0.196 Sum_probs=65.0
Q ss_pred EEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccC----CCCeEEEEEEEEeCCCCCChHHHHHHHHHHHHHhhh
Q 020794 44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPE----KKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNA 115 (321)
Q Consensus 44 Iltv~G~Dr~GIVA~VS~~La~~G~NI~d~~q~~~~----l~g~F~Mr~~v~~~~~~~~~~~L~~~L~~la~~lg~ 115 (321)
++++.|+|+||+|++||++|+++|+||.+++++... ..+.|+|++++++|+ ..+.++|+++|+.+++++|+
T Consensus 1 ~l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p~-~~~~~~l~~~l~~l~~~~~~ 75 (81)
T cd04869 1 VVEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALPA-GTDLDALREELEELCDDLNV 75 (81)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecCC-CCCHHHHHHHHHHHHHHhcc
Confidence 489999999999999999999999999999998764 338999999999986 57899999999999999986
No 31
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=99.07 E-value=4.5e-10 Score=101.83 Aligned_cols=74 Identities=11% Similarity=0.033 Sum_probs=65.2
Q ss_pred cEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccC----CCCeEEEEEEEEeCCCCCChHHHHHHHHHHHHHhhhc
Q 020794 42 HGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPE----KKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAM 116 (321)
Q Consensus 42 ~~Iltv~G~Dr~GIVA~VS~~La~~G~NI~d~~q~~~~----l~g~F~Mr~~v~~~~~~~~~~~L~~~L~~la~~lg~~ 116 (321)
.+.++|+|+||||||++||++|+++|+||.+++..... ....|.|++++.+|. ..+.++|+++|+.+|+++++.
T Consensus 95 ~~~v~v~G~DrPGIV~~vT~~la~~~iNI~~L~T~~~~a~~~~~~lf~~~~~v~lP~-~~~~~~L~~~l~~l~~eL~vd 172 (190)
T PRK11589 95 TVWVQVEVADSPHLIERFTALFDSHHMNIAELVSRTQPAEGERPAQLHIQITAHSPA-SQDAANIEQAFKALCTELNAQ 172 (190)
T ss_pred eEEEEEEECCCCCHHHHHHHHHHHcCCChhheEEeeecCCCCCcccEEEEEEEEcCC-CCCHHHHHHHHHHHHHHhCce
Confidence 59999999999999999999999999999998776432 233799999999997 456999999999999999864
No 32
>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains
Probab=98.96 E-value=5.2e-10 Score=88.60 Aligned_cols=69 Identities=16% Similarity=0.120 Sum_probs=59.0
Q ss_pred EEEEEcCC-ccchHHHHHHHHHhcCCeEeEeeeeccCCCCeE---------EEEEEEEeCCCCCChHHHHHHHHHHHHHh
Q 020794 44 IHVFHCPD-EVGIVAKLSECIASRGGNILAADVFVPEKKNVF---------YSRSEFIFDPIKWPREQMDEDFFKLSKMF 113 (321)
Q Consensus 44 Iltv~G~D-r~GIVA~VS~~La~~G~NI~d~~q~~~~l~g~F---------~Mr~~v~~~~~~~~~~~L~~~L~~la~~l 113 (321)
|+|+.|.| +.|+||+||+.|+++|+||.++++- .|+| .|.|+++++..+.+.++|+++|..+++++
T Consensus 1 ivtvlg~~~~a~~ia~Vs~~lA~~~~NI~~I~~l----~~~~~~~~~~~~~~~~~e~~v~~~~~~~~~lr~~L~~la~el 76 (84)
T cd04871 1 IVTLLGRPLTAEQLAAVTRVVADQGLNIDRIRRL----SGRVPLEEQDDSPKACVEFSVRGQPADLEALRAALLELASEL 76 (84)
T ss_pred CEEEEcCcCCHHHHHHHHHHHHHcCCCHHHHHHh----hccccccccCCCCcEEEEEEEeCCCCCHHHHHHHHHHHhccc
Confidence 68999999 9999999999999999999999984 4555 45666666655568999999999999999
Q ss_pred hhc
Q 020794 114 NAM 116 (321)
Q Consensus 114 g~~ 116 (321)
|+.
T Consensus 77 gvD 79 (84)
T cd04871 77 NVD 79 (84)
T ss_pred Cce
Confidence 873
No 33
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=98.64 E-value=8.4e-08 Score=69.94 Aligned_cols=65 Identities=23% Similarity=0.157 Sum_probs=47.0
Q ss_pred EEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHHH
Q 020794 43 GIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLS 110 (321)
Q Consensus 43 ~Iltv~G~Dr~GIVA~VS~~La~~G~NI~d~~q~~~~l~g~F~Mr~~v~~~~~~~~~~~L~~~L~~la 110 (321)
+.+++.|+||||++++|++.|+++|+||..+.+.....+ ...+.+....+. ...+++.++|+++.
T Consensus 1 ~~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~l~~~~ 65 (66)
T PF01842_consen 1 YRVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDG-VGIVFIVIVVDE--EDLEKLLEELEALP 65 (66)
T ss_dssp EEEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESST-TEEEEEEEEEEG--HGHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCC-ceEEEEEEECCC--CCHHHHHHHHHccc
Confidence 578999999999999999999999999999999976332 222233333222 24677777777653
No 34
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=98.54 E-value=3e-07 Score=82.06 Aligned_cols=71 Identities=15% Similarity=0.064 Sum_probs=63.0
Q ss_pred ccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHHHHHhhh
Q 020794 41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNA 115 (321)
Q Consensus 41 ~~~Iltv~G~Dr~GIVA~VS~~La~~G~NI~d~~q~~~~l~g~F~Mr~~v~~~~~~~~~~~L~~~L~~la~~lg~ 115 (321)
+.+|||+.|+||||+|..+++.++++||||+++.... .++.|+.+|.+..+-. ..+.|++.|..+.++.|+
T Consensus 4 ~~LvItavg~d~pgl~~~lar~v~s~Gcn~leSRla~--~g~~~a~i~lisgs~d--av~~le~~l~~l~~~~~L 74 (176)
T COG2716 4 HYLVITAVGADRPGLVNTLARAVASSGCNWLESRLAM--LGEEFAGIMLISGSWD--AVTLLEATLPLLGAELDL 74 (176)
T ss_pred cEEEEEEecCCCcHHHHHHHHHHHhcCCcchHHHHHH--hhcceeEEEEEeeCHH--HHHHHHHHhhcccccCCe
Confidence 3489999999999999999999999999999998874 4889999999887653 589999999999988775
No 35
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.27 E-value=4.1e-06 Score=64.36 Aligned_cols=46 Identities=11% Similarity=0.107 Sum_probs=41.4
Q ss_pred EEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEE
Q 020794 44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFI 91 (321)
Q Consensus 44 Iltv~G~Dr~GIVA~VS~~La~~G~NI~d~~q~~~~l~g~F~Mr~~v~ 91 (321)
++.+.|+||||+++.|++.|+++|+||.+...+.. +|.+...+.+.
T Consensus 2 ~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~--~~~~~d~f~V~ 47 (74)
T cd04925 2 AIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTH--NGRLACVIYVR 47 (74)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEE--CCEEEEEEEEE
Confidence 78999999999999999999999999999988853 78888777775
No 36
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=98.14 E-value=4.6e-06 Score=74.54 Aligned_cols=105 Identities=13% Similarity=0.096 Sum_probs=77.0
Q ss_pred chhhhhhhhhhhhh---hcccccccccCCCCcccCCCCCCcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeec--
Q 020794 3 LLRRLSSSLQQVVK---FTNRSFKSLKFPGEPIESSVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFV-- 77 (321)
Q Consensus 3 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~Iltv~G~Dr~GIVA~VS~~La~~G~NI~d~~q~~-- 77 (321)
++-+|-++||++=+ -+++-+|.--|+- ......+.+.|.+.||||||.++|+++.+||+||++.+...
T Consensus 57 av~~le~~l~~l~~~~~L~v~m~rt~~~~~-------~a~~~~v~v~v~a~DrpgIv~~~T~lf~~~~inie~L~~~~~~ 129 (176)
T COG2716 57 AVTLLEATLPLLGAELDLLVVMKRTGAHPT-------PANPAPVWVYVDANDRPGIVEEFTALFDGHGINIENLVSRTYP 129 (176)
T ss_pred HHHHHHHHhhcccccCCeEEEEeecCCCcc-------CCCCceEEEEEEecCCccHHHHHHHHHHhcCCchhhceeeeee
Confidence 34566666666555 4455555444431 12234588999999999999999999999999999965542
Q ss_pred --cCCCCeEEEEEEEEeCCCCCChHHHHHHHHHHHHHhhh
Q 020794 78 --PEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNA 115 (321)
Q Consensus 78 --~~l~g~F~Mr~~v~~~~~~~~~~~L~~~L~~la~~lg~ 115 (321)
......|..-+-+.+|- +...+.|+++|+++|+++.+
T Consensus 130 a~~s~~~lfha~it~~lPa-~~~i~~l~~~f~al~~~L~v 168 (176)
T COG2716 130 APGSSAPLFHAQITARLPA-NLSISALRDAFEALCDELNV 168 (176)
T ss_pred cCCCCccceehhhhccCCC-cCcHHHHHHHHHHHHHhhcc
Confidence 22345688777777774 67899999999999999865
No 37
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=98.09 E-value=2e-05 Score=60.67 Aligned_cols=68 Identities=15% Similarity=0.116 Sum_probs=51.6
Q ss_pred CcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHHH
Q 020794 39 TLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLS 110 (321)
Q Consensus 39 ~~~~~Iltv~G~Dr~GIVA~VS~~La~~G~NI~d~~q~~~~l~g~F~Mr~~v~~~~~~~~~~~L~~~L~~la 110 (321)
....+-|.+.+.||+|++++|++.++++|+||.+++.......|.+.+.+.+++++ .++|..-++++-
T Consensus 3 ~~f~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V~d----~~~L~~ii~~L~ 70 (80)
T PF13291_consen 3 KSFPVRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEVKD----LEHLNQIIRKLR 70 (80)
T ss_dssp --EEEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEESS----HHHHHHHHHHHC
T ss_pred cEEEEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEECC----HHHHHHHHHHHH
Confidence 34457799999999999999999999999999999998632368888999999864 566666665543
No 38
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=97.96 E-value=6.2e-05 Score=55.27 Aligned_cols=49 Identities=18% Similarity=0.168 Sum_probs=40.0
Q ss_pred EEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCC
Q 020794 44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDP 94 (321)
Q Consensus 44 Iltv~G~Dr~GIVA~VS~~La~~G~NI~d~~q~~~~l~g~F~Mr~~v~~~~ 94 (321)
.|++.|+|++|+++++++.|+++|+||.++.++.. ++....++.+..++
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~--~~~~~~~~~v~~~~ 50 (70)
T cd04873 2 VVEVYAPDRPGLLADITRVLADLGLNIHDARISTT--GERALDVFYVTDSD 50 (70)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeec--CCEEEEEEEEECCC
Confidence 58899999999999999999999999999988754 34555566666543
No 39
>PRK08577 hypothetical protein; Provisional
Probab=97.91 E-value=7.1e-05 Score=63.93 Aligned_cols=76 Identities=18% Similarity=0.166 Sum_probs=57.8
Q ss_pred CCCCCCcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHH
Q 020794 34 SSVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKL 109 (321)
Q Consensus 34 ~~~~~~~~~~Iltv~G~Dr~GIVA~VS~~La~~G~NI~d~~q~~~~l~g~F~Mr~~v~~~~~~~~~~~L~~~L~~l 109 (321)
.-.++....+-+++.+.|++|++++|++.++++|+||.++++.....++.+.+.+.+++++.....+++.+.|.++
T Consensus 48 ~~~~~~k~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~vev~~~~~~l~~l~~~L~~l 123 (136)
T PRK08577 48 PIALPGKKLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIVDLSKSDIDLEELEEELKKL 123 (136)
T ss_pred EcCCCCccEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEEEeCCchhhHHHHHHHHHcC
Confidence 3455666788999999999999999999999999999998776443356677888898876323455555555543
No 40
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=97.84 E-value=4.9e-05 Score=68.33 Aligned_cols=73 Identities=22% Similarity=0.298 Sum_probs=57.1
Q ss_pred ccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHHHHHhhh
Q 020794 41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNA 115 (321)
Q Consensus 41 ~~~Iltv~G~Dr~GIVA~VS~~La~~G~NI~d~~q~~~~l~g~F~Mr~~v~~~~~~~~~~~L~~~L~~la~~lg~ 115 (321)
|+..+.+.+.|+||+++.||+.++.+|.||..++.......|.- ++.+.+++.....++|++.|.++++-+.+
T Consensus 1 m~~~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~s--r~TIvv~~~~~~ieqL~kQL~KLidVl~V 73 (174)
T CHL00100 1 MKHTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGIS--RITMVVPGDDRTIEQLTKQLYKLVNILKV 73 (174)
T ss_pred CeEEEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCcc--EEEEEEECCHHHHHHHHHHHHHHhHhhEE
Confidence 46789999999999999999999999999999988643334443 55555554322388999999999987754
No 41
>PRK04435 hypothetical protein; Provisional
Probab=97.83 E-value=8.6e-05 Score=64.72 Aligned_cols=57 Identities=19% Similarity=0.142 Sum_probs=49.1
Q ss_pred CCCcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCC
Q 020794 37 SPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDP 94 (321)
Q Consensus 37 ~~~~~~~Iltv~G~Dr~GIVA~VS~~La~~G~NI~d~~q~~~~l~g~F~Mr~~v~~~~ 94 (321)
...+..+-+.+.++|++|+.++|.+.|+++|+||+.++|.+. .+|...+.+.++.++
T Consensus 64 ~~~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~-~~g~a~vs~tVevs~ 120 (147)
T PRK04435 64 MVKGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIP-LQGRANVTISIDTSS 120 (147)
T ss_pred cCCCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcC-CCCEEEEEEEEEeCC
Confidence 366778899999999999999999999999999999999763 467777788887764
No 42
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.81 E-value=8e-05 Score=56.01 Aligned_cols=50 Identities=16% Similarity=0.167 Sum_probs=42.2
Q ss_pred EEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCC
Q 020794 44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDP 94 (321)
Q Consensus 44 Iltv~G~Dr~GIVA~VS~~La~~G~NI~d~~q~~~~l~g~F~Mr~~v~~~~ 94 (321)
-+.+.++|++|+.++|++.|+++|+||..+++... .+|.+.+.+.++..+
T Consensus 2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~-~~~~~~i~~~v~v~~ 51 (76)
T cd04888 2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIP-IHGRANVTISIDTST 51 (76)
T ss_pred EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCC-CCCeEEEEEEEEcCc
Confidence 37788999999999999999999999999998643 257788888887754
No 43
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.74 E-value=0.00031 Score=52.05 Aligned_cols=48 Identities=17% Similarity=0.104 Sum_probs=39.1
Q ss_pred EEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeC
Q 020794 44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFD 93 (321)
Q Consensus 44 Iltv~G~Dr~GIVA~VS~~La~~G~NI~d~~q~~~~l~g~F~Mr~~v~~~ 93 (321)
++.+.|+|++|+++++++.++++|+||.++..... .+.....+.+..+
T Consensus 2 ~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~--~~~~~~~f~i~~~ 49 (70)
T cd04899 2 VLELTALDRPGLLADVTRVLAELGLNIHSAKIATL--GERAEDVFYVTDA 49 (70)
T ss_pred EEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEec--CCEEEEEEEEECC
Confidence 58899999999999999999999999999988743 4555555555543
No 44
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.73 E-value=0.00028 Score=51.41 Aligned_cols=61 Identities=23% Similarity=0.162 Sum_probs=43.0
Q ss_pred EEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccC---CCCeEEEEEEEEeCCCCCChHHHHHHHHHH
Q 020794 45 HVFHCPDEVGIVAKLSECIASRGGNILAADVFVPE---KKNVFYSRSEFIFDPIKWPREQMDEDFFKL 109 (321)
Q Consensus 45 ltv~G~Dr~GIVA~VS~~La~~G~NI~d~~q~~~~---l~g~F~Mr~~v~~~~~~~~~~~L~~~L~~l 109 (321)
+.+.++|+||.+++|++.++++|+||.++++.... ..+...+.+.++.. +.+++++-++.+
T Consensus 1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~~----~~~~l~~l~~~l 64 (73)
T cd04886 1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLETR----GAEHIEEIIAAL 64 (73)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEeC----CHHHHHHHHHHH
Confidence 35788999999999999999999999999876432 13555555666653 345554444444
No 45
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.67 E-value=0.00023 Score=51.98 Aligned_cols=61 Identities=21% Similarity=0.279 Sum_probs=43.0
Q ss_pred EEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHH
Q 020794 44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK 108 (321)
Q Consensus 44 Iltv~G~Dr~GIVA~VS~~La~~G~NI~d~~q~~~~l~g~F~Mr~~v~~~~~~~~~~~L~~~L~~ 108 (321)
.+++.++|++|+++++++.|+++|+||.++.+... .++.+.+.+.++ +. ...+++.++|++
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~-~~~~~~~~i~~~--~~-~~~~~~~~~L~~ 62 (72)
T cd04874 2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIE-REGKARIYMELE--GV-GDIEELVEELRS 62 (72)
T ss_pred eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEecc-CCCeEEEEEEEe--cc-ccHHHHHHHHhC
Confidence 57889999999999999999999999999988743 235555554443 31 133444444443
No 46
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.66 E-value=0.0004 Score=52.07 Aligned_cols=62 Identities=15% Similarity=0.222 Sum_probs=48.4
Q ss_pred EEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHHHH
Q 020794 45 HVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSK 111 (321)
Q Consensus 45 ltv~G~Dr~GIVA~VS~~La~~G~NI~d~~q~~~~l~g~F~Mr~~v~~~~~~~~~~~L~~~L~~la~ 111 (321)
+.+.++||+|.+++|++.+++.|+||.+++.... ..|...+.+.+++++ .++|.+-++.+.+
T Consensus 2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~-~~~~~~~~~~vev~~----~~~l~~i~~~L~~ 63 (74)
T cd04887 2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQ-GRDYTVRDITVDAPS----EEHAETIVAAVRA 63 (74)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEe-cCCEEEEEEEEEcCC----HHHHHHHHHHHhc
Confidence 6788999999999999999999999999887542 246777777777753 5666666665544
No 47
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=97.65 E-value=0.00015 Score=53.83 Aligned_cols=60 Identities=17% Similarity=0.100 Sum_probs=43.6
Q ss_pred EEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHH
Q 020794 45 HVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK 108 (321)
Q Consensus 45 ltv~G~Dr~GIVA~VS~~La~~G~NI~d~~q~~~~l~g~F~Mr~~v~~~~~~~~~~~L~~~L~~ 108 (321)
+++.++|++|+++++++.|+++|+||.++.......++...+++.++.+ ...++.++|++
T Consensus 2 l~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v~~~----~~~~~~~~l~~ 61 (73)
T cd04902 2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSVDEP----VPDEVLEELRA 61 (73)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEeCCC----CCHHHHHHHHc
Confidence 5778999999999999999999999998865432235666666666542 23455555554
No 48
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.58 E-value=0.00028 Score=52.47 Aligned_cols=35 Identities=20% Similarity=0.354 Sum_probs=31.8
Q ss_pred EEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeec
Q 020794 43 GIHVFHCPDEVGIVAKLSECIASRGGNILAADVFV 77 (321)
Q Consensus 43 ~Iltv~G~Dr~GIVA~VS~~La~~G~NI~d~~q~~ 77 (321)
+-+++..+|+||.++++++.++++|+||..+.+..
T Consensus 2 ~~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~ 36 (69)
T cd04909 2 YDLYVDVPDEPGVIAEVTQILGDAGISIKNIEILE 36 (69)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEE
Confidence 45889999999999999999999999999987664
No 49
>PRK03381 PII uridylyl-transferase; Provisional
Probab=97.58 E-value=0.0016 Score=70.37 Aligned_cols=69 Identities=13% Similarity=-0.022 Sum_probs=55.8
Q ss_pred cccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCC-CChHHHHHHHHHHH
Q 020794 40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIK-WPREQMDEDFFKLS 110 (321)
Q Consensus 40 ~~~~Iltv~G~Dr~GIVA~VS~~La~~G~NI~d~~q~~~~l~g~F~Mr~~v~~~~~~-~~~~~L~~~L~~la 110 (321)
.....|+|.|+||||++|+||+.|+.+|+||++.+.+. .+|.+...+.|.-+... ...+.++++|.+..
T Consensus 597 ~~~~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t--~dg~~ld~F~V~~~~~~~~~~~~l~~~L~~~L 666 (774)
T PRK03381 597 PHMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRS--HDGVAVLEFVVSPRFGSPPDAALLRQDLRRAL 666 (774)
T ss_pred CCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEe--cCCEEEEEEEEECCCCCcchHHHHHHHHHHHH
Confidence 45578999999999999999999999999999999986 58888887777643322 33577888887754
No 50
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains. The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.55 E-value=0.00064 Score=50.26 Aligned_cols=64 Identities=11% Similarity=0.060 Sum_probs=47.5
Q ss_pred EEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHHHH
Q 020794 44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSK 111 (321)
Q Consensus 44 Iltv~G~Dr~GIVA~VS~~La~~G~NI~d~~q~~~~l~g~F~Mr~~v~~~~~~~~~~~L~~~L~~la~ 111 (321)
.+.+.+.|++|+++++++.++++|+||..+.+.....++...+.+.+... +.+++++.++.+.+
T Consensus 2 yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~~~~----~~~~l~~~i~~L~~ 65 (79)
T cd04881 2 YLRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVTHET----SEAALNAALAEIEA 65 (79)
T ss_pred EEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEEccC----CHHHHHHHHHHHHc
Confidence 57889999999999999999999999999987533222555566655533 46667766666554
No 51
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.53 E-value=0.00086 Score=51.57 Aligned_cols=64 Identities=16% Similarity=0.124 Sum_probs=44.8
Q ss_pred EEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHH
Q 020794 43 GIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK 108 (321)
Q Consensus 43 ~Iltv~G~Dr~GIVA~VS~~La~~G~NI~d~~q~~~~l~g~F~Mr~~v~~~~~~~~~~~L~~~L~~ 108 (321)
+-+.|.++||||+.+.++..|+.+|.||.+.+-+.. .+|.=.=...+. +....+.++|++++.+
T Consensus 2 ~eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt-~dG~~LDtF~V~-d~~~~~~~~~~~~~~~ 65 (68)
T cd04928 2 HEITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFST-DDGLALDIFVVT-GWKRGETAALGHALQK 65 (68)
T ss_pred EEEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEc-CCCeEEEEEEEe-cCCccchHHHHHHHHH
Confidence 357899999999999999999999999999887754 244411122222 2223456777777654
No 52
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=97.50 E-value=0.0004 Score=50.49 Aligned_cols=48 Identities=21% Similarity=0.106 Sum_probs=39.1
Q ss_pred EEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEe
Q 020794 45 HVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIF 92 (321)
Q Consensus 45 ltv~G~Dr~GIVA~VS~~La~~G~NI~d~~q~~~~l~g~F~Mr~~v~~ 92 (321)
+.+.+.|++|+++++++.++++|+||..+.+.....++...+.+.++.
T Consensus 3 l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 50 (72)
T cd04878 3 LSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEG 50 (72)
T ss_pred EEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEEC
Confidence 677899999999999999999999999998864223566666776664
No 53
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains. ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i
Probab=97.42 E-value=0.00048 Score=48.26 Aligned_cols=49 Identities=18% Similarity=0.183 Sum_probs=38.9
Q ss_pred EEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCC
Q 020794 45 HVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDP 94 (321)
Q Consensus 45 ltv~G~Dr~GIVA~VS~~La~~G~NI~d~~q~~~~l~g~F~Mr~~v~~~~ 94 (321)
|.+.++|++|+++.+++.+.++++||.++.+... ..+...+.+.+..+.
T Consensus 1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~ 49 (71)
T cd04876 1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTD-DDGLATIRLTLEVRD 49 (71)
T ss_pred CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEEC-CCCEEEEEEEEEECC
Confidence 4678999999999999999999999999887632 235555677777653
No 54
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=97.41 E-value=0.00094 Score=48.23 Aligned_cols=60 Identities=23% Similarity=0.267 Sum_probs=42.9
Q ss_pred EEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHH
Q 020794 45 HVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK 108 (321)
Q Consensus 45 ltv~G~Dr~GIVA~VS~~La~~G~NI~d~~q~~~~l~g~F~Mr~~v~~~~~~~~~~~L~~~L~~ 108 (321)
+.+.++|++|+++++++.|+++|+||..+........|...+.+.+ +. . ..+++.++|++
T Consensus 2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v--~~-~-~~~~l~~~l~~ 61 (71)
T cd04879 2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDV--DS-P-VPEEVLEELKA 61 (71)
T ss_pred EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEc--CC-C-CCHHHHHHHHc
Confidence 5678999999999999999999999999987643213555555555 32 2 34555555554
No 55
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.39 E-value=0.0019 Score=50.00 Aligned_cols=35 Identities=17% Similarity=0.237 Sum_probs=32.0
Q ss_pred EEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeec
Q 020794 43 GIHVFHCPDEVGIVAKLSECIASRGGNILAADVFV 77 (321)
Q Consensus 43 ~Iltv~G~Dr~GIVA~VS~~La~~G~NI~d~~q~~ 77 (321)
+++.+.|+||||+.|++++.|+++|+||.+..-+.
T Consensus 1 ~~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~T 35 (76)
T cd04927 1 FLLKLFCSDRKGLLHDVTEVLYELELTIERVKVST 35 (76)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEE
Confidence 36889999999999999999999999999987764
No 56
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.27 E-value=0.0027 Score=48.30 Aligned_cols=34 Identities=29% Similarity=0.483 Sum_probs=31.2
Q ss_pred EEEEEcCCccchHHHHHHHHHhcCCeEeEeeeec
Q 020794 44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFV 77 (321)
Q Consensus 44 Iltv~G~Dr~GIVA~VS~~La~~G~NI~d~~q~~ 77 (321)
.+.|.|+||||+.++|++.|+.+|+||.+..-+.
T Consensus 3 ~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T 36 (73)
T cd04900 3 EVFIYTPDRPGLFARIAGALDQLGLNILDARIFT 36 (73)
T ss_pred EEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEE
Confidence 5789999999999999999999999999987654
No 57
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.21 E-value=0.0018 Score=46.88 Aligned_cols=60 Identities=23% Similarity=0.170 Sum_probs=41.3
Q ss_pred EEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHH
Q 020794 45 HVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK 108 (321)
Q Consensus 45 ltv~G~Dr~GIVA~VS~~La~~G~NI~d~~q~~~~l~g~F~Mr~~v~~~~~~~~~~~L~~~L~~ 108 (321)
+++.++|++|+++++++.|+++|+||..+.+.....++.-.+. +.+.+. ..+++.++|++
T Consensus 2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~i~--i~v~~~--~~~~~i~~l~~ 61 (71)
T cd04903 2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVSRKEKGDQALMV--IEVDQP--IDEEVIEEIKK 61 (71)
T ss_pred EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEeccCCCeEEEE--EEeCCC--CCHHHHHHHHc
Confidence 5778999999999999999999999999887531112333333 555442 44555555554
No 58
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=97.18 E-value=0.0015 Score=51.39 Aligned_cols=66 Identities=11% Similarity=0.064 Sum_probs=48.6
Q ss_pred ccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHH
Q 020794 41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK 108 (321)
Q Consensus 41 ~~~Iltv~G~Dr~GIVA~VS~~La~~G~NI~d~~q~~~~l~g~F~Mr~~v~~~~~~~~~~~L~~~L~~ 108 (321)
|++.+++.-.++||+.+.|+..++..|.||..++....+..|..-|.+.+..++ ...+++.+.|++
T Consensus 1 m~~tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~~~~--~~i~qi~kQL~K 66 (76)
T PRK06737 1 MSHTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAVCTE--NEATLLVSQLKK 66 (76)
T ss_pred CeEEEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEECCH--HHHHHHHHHHhC
Confidence 467899999999999999999999999999999887555556666666655332 234444444443
No 59
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=97.12 E-value=0.0028 Score=48.19 Aligned_cols=57 Identities=11% Similarity=0.136 Sum_probs=43.3
Q ss_pred EEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHHH
Q 020794 45 HVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLS 110 (321)
Q Consensus 45 ltv~G~Dr~GIVA~VS~~La~~G~NI~d~~q~~~~l~g~F~Mr~~v~~~~~~~~~~~L~~~L~~la 110 (321)
|.+.|.||+|+.+.|++.+++.|+||..++.... +. +.+.++.. +.++|..-++++-
T Consensus 3 l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~---~~--i~l~i~v~----~~~~L~~li~~L~ 59 (74)
T cd04877 3 LEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK---GR--IYLNFPTI----EFEKLQTLMPEIR 59 (74)
T ss_pred EEEEEEccchHHHHHHHHHHHCCCceEEEEEecC---Ce--EEEEeEec----CHHHHHHHHHHHh
Confidence 6788999999999999999999999999998632 33 66677665 3455555554443
No 60
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=97.11 E-value=0.0014 Score=46.89 Aligned_cols=46 Identities=22% Similarity=0.181 Sum_probs=36.3
Q ss_pred EEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEE
Q 020794 45 HVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFI 91 (321)
Q Consensus 45 ltv~G~Dr~GIVA~VS~~La~~G~NI~d~~q~~~~l~g~F~Mr~~v~ 91 (321)
+.+..+|+||.++++++.|.++|+||..+...... ++.-.+++.++
T Consensus 1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~-~~~~~~~~~v~ 46 (56)
T cd04889 1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETR-GEFGILRLIFS 46 (56)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEcc-CCcEEEEEEEC
Confidence 35678999999999999999999999998866432 35555666554
No 61
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-
Probab=97.06 E-value=0.00088 Score=49.34 Aligned_cols=57 Identities=14% Similarity=0.124 Sum_probs=42.1
Q ss_pred EEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHH
Q 020794 45 HVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFF 107 (321)
Q Consensus 45 ltv~G~Dr~GIVA~VS~~La~~G~NI~d~~q~~~~l~g~F~Mr~~v~~~~~~~~~~~L~~~L~ 107 (321)
+++.+.|++|..+++++.++++|+||..++.... +|...|.+.++.+ ..+++.+.|.
T Consensus 2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~--~~~a~~~~~~~~~----~l~~li~~l~ 58 (69)
T cd04901 2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQTR--GEIGYVVIDIDSE----VSEELLEALR 58 (69)
T ss_pred EEEEecCCCcHHHHHHHHHHHcCCCHHHHhccCC--CCEEEEEEEcCCC----CCHHHHHHHH
Confidence 5778999999999999999999999988866432 3666677666553 3344555454
No 62
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.06 E-value=0.0056 Score=45.46 Aligned_cols=61 Identities=18% Similarity=0.187 Sum_probs=42.3
Q ss_pred EEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHH
Q 020794 44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK 108 (321)
Q Consensus 44 Iltv~G~Dr~GIVA~VS~~La~~G~NI~d~~q~~~~l~g~F~Mr~~v~~~~~~~~~~~L~~~L~~ 108 (321)
.+++..+|+||..+++++.++++|+||..+........+.=.+++.++.. +.+.+.+.|++
T Consensus 3 ~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~~~----~~~~~~~~L~~ 63 (72)
T cd04883 3 QIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQTM----NPRPIIEDLRR 63 (72)
T ss_pred EEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEecC----CHHHHHHHHHH
Confidence 46778899999999999999999999999876533223333344444432 34566666654
No 63
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.04 E-value=0.0013 Score=51.49 Aligned_cols=44 Identities=9% Similarity=0.198 Sum_probs=34.8
Q ss_pred EEEEEEcCCccchHHHHHHHHHhcCCeEeEeeee--ccCCCCeEEE
Q 020794 43 GIHVFHCPDEVGIVAKLSECIASRGGNILAADVF--VPEKKNVFYS 86 (321)
Q Consensus 43 ~Iltv~G~Dr~GIVA~VS~~La~~G~NI~d~~q~--~~~l~g~F~M 86 (321)
.|+.|.|+||||+.+.|+..|+++|.+|....-. .+...+.|+.
T Consensus 2 TvveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV 47 (75)
T cd04897 2 SVVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYI 47 (75)
T ss_pred EEEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEE
Confidence 4899999999999999999999999999985443 3333344553
No 64
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.01 E-value=0.0038 Score=47.01 Aligned_cols=33 Identities=12% Similarity=0.186 Sum_probs=29.1
Q ss_pred EEEEcCCccchHHHHHHHHHhcCCeEeEeeeec
Q 020794 45 HVFHCPDEVGIVAKLSECIASRGGNILAADVFV 77 (321)
Q Consensus 45 ltv~G~Dr~GIVA~VS~~La~~G~NI~d~~q~~ 77 (321)
+++.=+|+||..+++++.++++|+||+.+.+..
T Consensus 2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~ 34 (72)
T cd04884 2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAF 34 (72)
T ss_pred EEEEecCCCccHHHHHHHHHHCCCeEEEEEecc
Confidence 455669999999999999999999999987663
No 65
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
Probab=96.97 E-value=0.0045 Score=40.90 Aligned_cols=34 Identities=26% Similarity=0.351 Sum_probs=30.8
Q ss_pred EEEEcCCccchHHHHHHHHHhcCCeEeEeeeecc
Q 020794 45 HVFHCPDEVGIVAKLSECIASRGGNILAADVFVP 78 (321)
Q Consensus 45 ltv~G~Dr~GIVA~VS~~La~~G~NI~d~~q~~~ 78 (321)
+++.|+|++|+.+++++.|.++|+||..+.+...
T Consensus 1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~ 34 (60)
T cd02116 1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTS 34 (60)
T ss_pred CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEc
Confidence 4688999999999999999999999999988643
No 66
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=96.95 E-value=0.0031 Score=56.10 Aligned_cols=67 Identities=19% Similarity=0.123 Sum_probs=48.5
Q ss_pred ccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHH
Q 020794 41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKL 109 (321)
Q Consensus 41 ~~~Iltv~G~Dr~GIVA~VS~~La~~G~NI~d~~q~~~~l~g~F~Mr~~v~~~~~~~~~~~L~~~L~~l 109 (321)
|+.++++.-+|+||+.++|++.++++|+||..+........|...|.+.++.++ ...+++...|.++
T Consensus 1 m~~~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~~~~--~~i~qi~kQl~KL 67 (161)
T PRK11895 1 MRHTLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTSGDE--QVIEQITKQLNKL 67 (161)
T ss_pred CeEEEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEECCH--HHHHHHHHHHhcc
Confidence 467899999999999999999999999999998876433345555666665432 2355555555543
No 67
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.93 E-value=0.0077 Score=45.84 Aligned_cols=34 Identities=15% Similarity=0.302 Sum_probs=31.1
Q ss_pred EEEEEcCCccchHHHHHHHHHhcCCeEeEeeeec
Q 020794 44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFV 77 (321)
Q Consensus 44 Iltv~G~Dr~GIVA~VS~~La~~G~NI~d~~q~~ 77 (321)
.++|..+||+|+.+++++.|+++|+||.....+.
T Consensus 3 ri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t 36 (72)
T cd04926 3 RLELRTEDRVGLLSDVTRVFRENGLTVTRAEIST 36 (72)
T ss_pred EEEEEECCccCHHHHHHHHHHHCCcEEEEEEEec
Confidence 4778999999999999999999999999988764
No 68
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.87 E-value=0.0051 Score=47.78 Aligned_cols=34 Identities=12% Similarity=0.078 Sum_probs=31.0
Q ss_pred EEEEEEcCCccchHHHHHHHHHhcCCeEeEeeee
Q 020794 43 GIHVFHCPDEVGIVAKLSECIASRGGNILAADVF 76 (321)
Q Consensus 43 ~Iltv~G~Dr~GIVA~VS~~La~~G~NI~d~~q~ 76 (321)
.++.|.++||||+.+.|++.|+++|++|....-.
T Consensus 2 Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkIs 35 (72)
T cd04895 2 TLVKVDSARKPGILLEAVQVLTDLDLCITKAYIS 35 (72)
T ss_pred EEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEe
Confidence 5899999999999999999999999999986554
No 69
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=96.85 E-value=0.0059 Score=47.93 Aligned_cols=67 Identities=7% Similarity=0.097 Sum_probs=49.3
Q ss_pred cccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHH
Q 020794 40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKL 109 (321)
Q Consensus 40 ~~~~Iltv~G~Dr~GIVA~VS~~La~~G~NI~d~~q~~~~l~g~F~Mr~~v~~~~~~~~~~~L~~~L~~l 109 (321)
+|++.+++.-.++||+.+.|++.+...|.||..++.......+.--|.+.++ .....+++.+.|.++
T Consensus 1 mm~~~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v~---~~~~i~ql~kQL~KL 67 (76)
T PRK11152 1 MMQHQLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTVA---SERPIDLLSSQLNKL 67 (76)
T ss_pred CceEEEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEEC---CCchHHHHHHHHhcC
Confidence 3678899999999999999999999999999999887543344444544443 233566666666543
No 70
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.84 E-value=0.005 Score=44.52 Aligned_cols=58 Identities=21% Similarity=0.196 Sum_probs=39.4
Q ss_pred EEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHH
Q 020794 44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFF 107 (321)
Q Consensus 44 Iltv~G~Dr~GIVA~VS~~La~~G~NI~d~~q~~~~l~g~F~Mr~~v~~~~~~~~~~~L~~~L~ 107 (321)
++++.=+|+||..+++++.|+++|+||..+.++.....|. .++.+.... .+.+.+.|+
T Consensus 1 ~i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~~~~~--~~v~~~ve~----~~~~~~~L~ 58 (65)
T cd04882 1 VLAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEKKGGK--ALLIFRTED----IEKAIEVLQ 58 (65)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccCCCCe--EEEEEEeCC----HHHHHHHHH
Confidence 3566779999999999999999999999987764321232 234455432 444444444
No 71
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=96.80 E-value=0.0088 Score=44.39 Aligned_cols=57 Identities=16% Similarity=0.172 Sum_probs=39.6
Q ss_pred EEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHH
Q 020794 44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK 108 (321)
Q Consensus 44 Iltv~G~Dr~GIVA~VS~~La~~G~NI~d~~q~~~~l~g~F~Mr~~v~~~~~~~~~~~L~~~L~~ 108 (321)
.+++.-+|+||..++|++.|+++|+||..+-.+.. ++. ..+.+... +.++..+.|++
T Consensus 3 ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~--~~~--~~~rl~~~----~~~~~~~~L~~ 59 (66)
T cd04908 3 QLSVFLENKPGRLAAVTEILSEAGINIRALSIADT--SEF--GILRLIVS----DPDKAKEALKE 59 (66)
T ss_pred EEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEec--CCC--CEEEEEEC----CHHHHHHHHHH
Confidence 46677899999999999999999999999876543 232 23333332 24455555553
No 72
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=96.69 E-value=0.012 Score=45.34 Aligned_cols=64 Identities=17% Similarity=0.164 Sum_probs=44.4
Q ss_pred EEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccC-CCCeEEEEEEEEeCCCCCChHHHHHHHHHHHH
Q 020794 45 HVFHCPDEVGIVAKLSECIASRGGNILAADVFVPE-KKNVFYSRSEFIFDPIKWPREQMDEDFFKLSK 111 (321)
Q Consensus 45 ltv~G~Dr~GIVA~VS~~La~~G~NI~d~~q~~~~-l~g~F~Mr~~v~~~~~~~~~~~L~~~L~~la~ 111 (321)
+++.-+|++|..+++.+.++++|+||+.+...-.. ..+.+..+++++.. .+.+.+++.++.+.+
T Consensus 4 l~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~~~~---~~~~~~~~~l~~l~~ 68 (80)
T cd04905 4 IVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDFEGH---IEDPNVAEALEELKR 68 (80)
T ss_pred EEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEEECC---CCCHHHHHHHHHHHH
Confidence 45555899999999999999999999998655321 23345555555542 235667777766654
No 73
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=96.68 E-value=0.0097 Score=45.11 Aligned_cols=31 Identities=29% Similarity=0.365 Sum_probs=27.1
Q ss_pred EEEcCCccchHHHHHHHHHhcCCeEeEeeee
Q 020794 46 VFHCPDEVGIVAKLSECIASRGGNILAADVF 76 (321)
Q Consensus 46 tv~G~Dr~GIVA~VS~~La~~G~NI~d~~q~ 76 (321)
.+.-+|+||..+.|-+.++++|+||+.+...
T Consensus 3 ~~~l~d~pG~L~~vL~~f~~~~vni~~I~Sr 33 (75)
T cd04880 3 VFSLKNKPGALAKALKVFAERGINLTKIESR 33 (75)
T ss_pred EEEeCCcCCHHHHHHHHHHHCCCCEEEEEee
Confidence 4455899999999999999999999999544
No 74
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=96.67 E-value=0.0068 Score=53.72 Aligned_cols=66 Identities=21% Similarity=0.189 Sum_probs=47.7
Q ss_pred cEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHH
Q 020794 42 HGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKL 109 (321)
Q Consensus 42 ~~Iltv~G~Dr~GIVA~VS~~La~~G~NI~d~~q~~~~l~g~F~Mr~~v~~~~~~~~~~~L~~~L~~l 109 (321)
+.++++.-+|+||..++|++.++++|+||..+...-....|...|.+.++.+ ....+++.+.|.++
T Consensus 1 ~~~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~~d--~~~i~qi~kQl~Kl 66 (157)
T TIGR00119 1 RHILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVVGD--DKVLEQITKQLNKL 66 (157)
T ss_pred CEEEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEECC--HHHHHHHHHHHhcC
Confidence 3578899999999999999999999999999887644335666666666642 22355555555543
No 75
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=96.66 E-value=0.0068 Score=48.58 Aligned_cols=51 Identities=14% Similarity=0.111 Sum_probs=42.3
Q ss_pred ccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEE
Q 020794 41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFI 91 (321)
Q Consensus 41 ~~~Iltv~G~Dr~GIVA~VS~~La~~G~NI~d~~q~~~~l~g~F~Mr~~v~ 91 (321)
|+.++++.-.++||+.+.||..+..+|.||..++....+..|.--|.+.++
T Consensus 1 mk~~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~ 51 (84)
T PRK13562 1 MTRILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVD 51 (84)
T ss_pred CcEEEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEe
Confidence 456789999999999999999999999999998887655556666666665
No 76
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=96.54 E-value=0.0045 Score=67.43 Aligned_cols=57 Identities=19% Similarity=0.290 Sum_probs=43.2
Q ss_pred CCCCcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeecc--CCCCeEEEEEEEEe
Q 020794 36 VSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVP--EKKNVFYSRSEFIF 92 (321)
Q Consensus 36 ~~~~~~~~Iltv~G~Dr~GIVA~VS~~La~~G~NI~d~~q~~~--~l~g~F~Mr~~v~~ 92 (321)
..++....++.|.|+||||+++.||++++++|+||....-... ...+.|++......
T Consensus 773 ~~~s~~~t~~~v~~~DrpGll~~i~~~l~~~~~~i~~a~i~t~~~~~~d~F~v~~~~g~ 831 (850)
T TIGR01693 773 NTASRKATIMEVRALDRPGLLARVGRTLEELGLSIQSAKITTFGEKAEDVFYVTDLFGL 831 (850)
T ss_pred cCCCCCeEEEEEEECCccHHHHHHHHHHHHCCCeEEEEEEEecCccceeEEEEECCCCC
Confidence 3445678899999999999999999999999999999666543 23334665544433
No 77
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.42 E-value=0.016 Score=44.23 Aligned_cols=63 Identities=17% Similarity=0.244 Sum_probs=49.0
Q ss_pred EEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCC---CCChHHHHHHHHHH
Q 020794 44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPI---KWPREQMDEDFFKL 109 (321)
Q Consensus 44 Iltv~G~Dr~GIVA~VS~~La~~G~NI~d~~q~~~~l~g~F~Mr~~v~~~~~---~~~~~~L~~~L~~l 109 (321)
++||.|||+.|+=..++..+.+.|.+|..-+...| |...-++..-.+.. +...+.|+..|...
T Consensus 2 vitvnCPDktGLgcdlcr~il~fGl~i~rgd~sTD---GkWCyiv~wVv~~~~~~~~rW~lLK~RL~~~ 67 (69)
T cd04894 2 VITINCPDKTGLGCDLCRIILEFGLNITRGDDSTD---GRWCYIVFWVVPRPPSIKVRWDLLKNRLMSA 67 (69)
T ss_pred EEEEeCCCccCcccHHHHHHHHhceEEEecccccC---CcEEEEEEEEecCCCCCcccHHHHHHHHHhc
Confidence 79999999999999999999999999999888654 66554555444443 45677777777643
No 78
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=96.22 E-value=0.022 Score=46.79 Aligned_cols=66 Identities=14% Similarity=-0.001 Sum_probs=44.9
Q ss_pred cccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHH
Q 020794 40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK 108 (321)
Q Consensus 40 ~~~~Iltv~G~Dr~GIVA~VS~~La~~G~NI~d~~q~~~~l~g~F~Mr~~v~~~~~~~~~~~L~~~L~~ 108 (321)
..+.+|++.-.|+||+.+.||..++..|.||..++..-....|.=-|.+.+. + ....+++...|.+
T Consensus 6 ~~~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv~--~-~~~i~Qi~kQL~K 71 (96)
T PRK08178 6 HDNVILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVN--D-DQRLEQMISQIEK 71 (96)
T ss_pred CCCEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEEc--C-chHHHHHHHHHhC
Confidence 4457899999999999999999999999999998776433333333444433 2 2234444444443
No 79
>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit. This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.
Probab=96.02 E-value=0.028 Score=51.61 Aligned_cols=65 Identities=17% Similarity=0.071 Sum_probs=47.7
Q ss_pred cccCCCCcccCCCCCCcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEe
Q 020794 24 SLKFPGEPIESSVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIF 92 (321)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~Iltv~G~Dr~GIVA~VS~~La~~G~NI~d~~q~~~~l~g~F~Mr~~v~~ 92 (321)
-...++++.+-++.. ..|.+.-.|+||+|++|++.|.++|+||-.++......+|.=.|.+.+|-
T Consensus 134 iv~idg~~vd~~~~g----~~L~~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~g~~Ai~vl~vD~ 198 (208)
T TIGR00719 134 ITEINGFAIEFRGEH----PAILLEHNDKFGTIAGVANLLAGFEINIEHLETAKKDIGNIALLTIEIDK 198 (208)
T ss_pred EEEECCEEEEecCCc----cEEEEEeCCCCChHHHHHHHHHhCCccEEEEEEEecCCCCEEEEEEEeCC
Confidence 344566666655432 34566679999999999999999999999998886545566556666664
No 80
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.97 E-value=0.071 Score=41.76 Aligned_cols=42 Identities=12% Similarity=0.154 Sum_probs=33.8
Q ss_pred EEEEEcCCccchHHHHHHHHHhcCCeEeEeeee----ccCCCCeEE
Q 020794 44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVF----VPEKKNVFY 85 (321)
Q Consensus 44 Iltv~G~Dr~GIVA~VS~~La~~G~NI~d~~q~----~~~l~g~F~ 85 (321)
++-|.|+||||..+.|++.++++|++|....-. ..+..+.|+
T Consensus 2 vlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fy 47 (75)
T cd04896 2 LLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFI 47 (75)
T ss_pred EEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEE
Confidence 688999999999999999999999999985544 233344465
No 81
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D.
Probab=95.95 E-value=0.032 Score=41.89 Aligned_cols=33 Identities=27% Similarity=0.314 Sum_probs=29.6
Q ss_pred cEEEEEEcC----CccchHHHHHHHHHhcCCeEeEee
Q 020794 42 HGIHVFHCP----DEVGIVAKLSECIASRGGNILAAD 74 (321)
Q Consensus 42 ~~Iltv~G~----Dr~GIVA~VS~~La~~G~NI~d~~ 74 (321)
-..|++.|+ |.+|+++++++.|+++|+||..++
T Consensus 6 ~~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is 42 (65)
T PF13840_consen 6 WAKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS 42 (65)
T ss_dssp EEEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE
T ss_pred EEEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE
Confidence 457899998 899999999999999999999998
No 82
>PRK07334 threonine dehydratase; Provisional
Probab=95.79 E-value=0.06 Score=53.81 Aligned_cols=67 Identities=13% Similarity=0.016 Sum_probs=51.9
Q ss_pred cccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeecc---CCCCeEEEEEEEEeCCCCCChHHHHHHHHHHH
Q 020794 40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVP---EKKNVFYSRSEFIFDPIKWPREQMDEDFFKLS 110 (321)
Q Consensus 40 ~~~~Iltv~G~Dr~GIVA~VS~~La~~G~NI~d~~q~~~---~l~g~F~Mr~~v~~~~~~~~~~~L~~~L~~la 110 (321)
+...-|.+.+.||+|++++|++.|++.++||.+++.... ..++...+.+.+++. +.++|.+-++++.
T Consensus 324 ~y~v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~V~----d~~~L~~vi~~Lr 393 (403)
T PRK07334 324 GRLARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIETR----DAAHLQEVIAALR 393 (403)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEEeC----CHHHHHHHHHHHH
Confidence 445679999999999999999999999999999987532 035777788888876 4566666665553
No 83
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=95.60 E-value=0.071 Score=57.73 Aligned_cols=71 Identities=11% Similarity=0.063 Sum_probs=56.4
Q ss_pred cccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHHHHHhh
Q 020794 40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFN 114 (321)
Q Consensus 40 ~~~~Iltv~G~Dr~GIVA~VS~~La~~G~NI~d~~q~~~~l~g~F~Mr~~v~~~~~~~~~~~L~~~L~~la~~lg 114 (321)
...+-|.|.+.||+|+++.||+.|++.++||.+++...+..++.+.|.+.+++++ .++|..-+..+.+--|
T Consensus 664 ~~~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ieV~~----~~~L~~l~~~L~~i~~ 734 (743)
T PRK10872 664 GYSLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYN----LQVLGRVLGKLNQVPD 734 (743)
T ss_pred eeEEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEEECC----HHHHHHHHHHHhcCCC
Confidence 4567899999999999999999999999999999876433357888999998864 6777776666654333
No 84
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=95.60 E-value=0.043 Score=41.19 Aligned_cols=57 Identities=21% Similarity=0.181 Sum_probs=42.2
Q ss_pred CccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHH
Q 020794 51 DEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKL 109 (321)
Q Consensus 51 Dr~GIVA~VS~~La~~G~NI~d~~q~~~~l~g~F~Mr~~v~~~~~~~~~~~L~~~L~~l 109 (321)
|+||++..|+..+...|.||..++.......+..-|.+.++.++ ...++|...|+++
T Consensus 1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~~~~--~~i~~l~~Ql~Kl 57 (63)
T PF13710_consen 1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVSGDD--REIEQLVKQLEKL 57 (63)
T ss_dssp SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEES-C--CHHHHHHHHHHCS
T ss_pred CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEeeCc--hhHHHHHHHHhcc
Confidence 68999999999999999999999888655677777777776543 3466666666543
No 85
>COG4492 PheB ACT domain-containing protein [General function prediction only]
Probab=95.57 E-value=0.052 Score=47.20 Aligned_cols=65 Identities=14% Similarity=0.084 Sum_probs=50.7
Q ss_pred cEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHH
Q 020794 42 HGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFF 107 (321)
Q Consensus 42 ~~Iltv~G~Dr~GIVA~VS~~La~~G~NI~d~~q~~~~l~g~F~Mr~~v~~~~~~~~~~~L~~~L~ 107 (321)
.+-|.+.=.||.|+.++|=+.+++.++||+-++|++ +++|.=...+-++.+....+.+.+-++|+
T Consensus 72 i~TL~l~ledr~G~LS~vLd~iA~~~~nvLTI~Q~i-pl~g~Anvtlsi~~ssm~~~V~~ii~kl~ 136 (150)
T COG4492 72 IITLSLSLEDRVGILSDVLDVIAREEINVLTIHQTI-PLQGRANVTLSIDTSSMEKDVDKIIEKLR 136 (150)
T ss_pred EEEEEEEEhhhhhhHHHHHHHHHHhCCcEEEEeccc-ccCceeeEEEEEEchhhhhhHHHHHHHHh
Confidence 355667789999999999999999999999999997 68888777777776654444444444444
No 86
>PRK05092 PII uridylyl-transferase; Provisional
Probab=95.49 E-value=0.041 Score=60.81 Aligned_cols=73 Identities=12% Similarity=0.051 Sum_probs=50.3
Q ss_pred CCCCcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEE-EEEEeCCC-C----CChHHHHHHHHHH
Q 020794 36 VSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSR-SEFIFDPI-K----WPREQMDEDFFKL 109 (321)
Q Consensus 36 ~~~~~~~~Iltv~G~Dr~GIVA~VS~~La~~G~NI~d~~q~~~~l~g~F~Mr-~~v~~~~~-~----~~~~~L~~~L~~l 109 (321)
+.+......|+|.|+||+|+.+.|++.|+.+|+||.+.+.+.. .+-|.+- +.|.-+.. . ...+.|++.|...
T Consensus 726 ~~~~~~~t~v~I~~~Dr~GLfa~i~~~L~~~glnI~~A~I~t~--~dg~alD~F~V~~~~g~~~~~~~~~~~l~~~L~~~ 803 (931)
T PRK05092 726 PDPARGVTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFTT--TDGRALDTFWIQDAFGRDEDEPRRLARLAKAIEDA 803 (931)
T ss_pred ecCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCcEEEEEEEEe--cCCeEEEEEEEECCCCCCCCCHHHHHHHHHHHHHH
Confidence 3444466799999999999999999999999999999987753 3334433 44432211 1 1255677777665
Q ss_pred H
Q 020794 110 S 110 (321)
Q Consensus 110 a 110 (321)
.
T Consensus 804 l 804 (931)
T PRK05092 804 L 804 (931)
T ss_pred H
Confidence 3
No 87
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.30 E-value=0.069 Score=39.98 Aligned_cols=30 Identities=20% Similarity=0.244 Sum_probs=27.0
Q ss_pred EEEcCCccchHHHHHHHHHhcCCeEeEeeee
Q 020794 46 VFHCPDEVGIVAKLSECIASRGGNILAADVF 76 (321)
Q Consensus 46 tv~G~Dr~GIVA~VS~~La~~G~NI~d~~q~ 76 (321)
+|.=|||||-.+++.+.|++ |.||++++..
T Consensus 2 ~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~ 31 (68)
T cd04885 2 AVTFPERPGALKKFLELLGP-PRNITEFHYR 31 (68)
T ss_pred EEECCCCCCHHHHHHHHhCC-CCcEEEEEEE
Confidence 45669999999999999999 9999999775
No 88
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=95.30 E-value=0.087 Score=56.53 Aligned_cols=68 Identities=12% Similarity=0.059 Sum_probs=55.2
Q ss_pred cccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHHHHH
Q 020794 40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKM 112 (321)
Q Consensus 40 ~~~~Iltv~G~Dr~GIVA~VS~~La~~G~NI~d~~q~~~~l~g~F~Mr~~v~~~~~~~~~~~L~~~L~~la~~ 112 (321)
...+-|.+.+.||+|+++.|++.|+++|+||.+++.... .++.+.|.+.+++. +.++|..-+..+-+-
T Consensus 608 ~f~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~-~~~~~~~~~~ieV~----~~~~L~~ii~~L~~i 675 (683)
T TIGR00691 608 RFIVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTY-GKREAILNITVEIK----NYKHLLKIMLKIKTK 675 (683)
T ss_pred eeEEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEc-CCCEEEEEEEEEEC----CHHHHHHHHHHHhCC
Confidence 456789999999999999999999999999999987643 35777888888886 467777777766543
No 89
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=95.25 E-value=0.1 Score=56.19 Aligned_cols=67 Identities=15% Similarity=0.108 Sum_probs=54.1
Q ss_pred cccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHHHH
Q 020794 40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSK 111 (321)
Q Consensus 40 ~~~~Iltv~G~Dr~GIVA~VS~~La~~G~NI~d~~q~~~~l~g~F~Mr~~v~~~~~~~~~~~L~~~L~~la~ 111 (321)
...+-|.+.+.||+|+++.|++.+++.|+||.+++.... .++.+.|.+.+++.+ .++|..-+..+.+
T Consensus 624 ~~~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~-~~~~~~~~~~ieV~~----~~~L~~i~~~Lr~ 690 (702)
T PRK11092 624 EFIAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEK-DGRVYSAFIRLTARD----RVHLANIMRKIRV 690 (702)
T ss_pred eeEEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEc-CCCEEEEEEEEEECC----HHHHHHHHHHHhC
Confidence 456789999999999999999999999999999996533 346778888888864 5777776666654
No 90
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=94.89 E-value=0.15 Score=44.70 Aligned_cols=118 Identities=15% Similarity=0.263 Sum_probs=66.5
Q ss_pred CeeEEEEEeCCchhHHHHHHhhhcCCcCeeEEEEEeCCC-C-CCCchHH----HHHHHcCCCEEEEcCCcchhHHHHHHH
Q 020794 128 KYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHD-R-GPNSHVI----RFLERHGIPYHYLCAKENEREEELLEL 201 (321)
Q Consensus 128 ~~rIavl~S~~g~~l~~lL~~~~~~~l~~~i~~Vis~~~-~-~~~~~v~----~~a~~~gIP~~~~~~~~~~~~~~~~~~ 201 (321)
.+||+++|-+.+.....++..+.. ++.++. +++... . +++..+. +.++++|-.+.... ++.+.
T Consensus 2 gl~i~~vGD~~~rv~~Sl~~~~~~--~g~~~~-~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~--------~~~e~ 70 (158)
T PF00185_consen 2 GLKIAYVGDGHNRVAHSLIELLAK--FGMEVV-LIAPEGLRYPPDPEVLEKAKKNAKKNGGKITITD--------DIEEA 70 (158)
T ss_dssp TEEEEEESSTTSHHHHHHHHHHHH--TTSEEE-EESSGGGGGSHHHHHHHHHHHHHHHHTTEEEEES--------SHHHH
T ss_pred CCEEEEECCCCChHHHHHHHHHHH--cCCEEE-EECCCcccCCCCHHHHHHHHHHHHHhCCCeEEEe--------CHHHh
Confidence 468999886445555555554332 345643 333332 0 1112344 55566776666542 24445
Q ss_pred hcCCCEEEEEeeccccchhhHhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeEEecCCCCCCCCC
Q 020794 202 VQNTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKG 272 (321)
Q Consensus 202 l~~~Dlivlag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~l~~~~~~~INiHpslLP~yrG 272 (321)
++++|++.+-+|... .+. +......-+.++.+..++++..+..++=+|| ||.+||
T Consensus 71 l~~aDvvy~~~~~s~-------------~~~-e~~~~~~~~~~y~v~~~~m~~a~~~~i~mH~--LP~~R~ 125 (158)
T PF00185_consen 71 LKGADVVYTDRWQSM-------------GDK-ERFKRLEKFKPYQVTEELMERAKPDAIFMHP--LPANRG 125 (158)
T ss_dssp HTT-SEEEEESSSCT-------------TSG-GHHHHHHHHGGGSBSHHHHHTSSTT-EEEES--SS--BT
T ss_pred cCCCCEEEEcCcccc-------------cch-HHHHHHHHhcCCccCHHHHHhcCCCcEEEeC--CCCCCC
Confidence 568999999988720 000 0001122344469999999998889999998 788888
No 91
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=94.81 E-value=0.12 Score=46.83 Aligned_cols=62 Identities=21% Similarity=0.178 Sum_probs=46.9
Q ss_pred EEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCC-eEEEEEEEEeCCCCCChHHHHHHHHHH
Q 020794 44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKN-VFYSRSEFIFDPIKWPREQMDEDFFKL 109 (321)
Q Consensus 44 Iltv~G~Dr~GIVA~VS~~La~~G~NI~d~~q~~~~l~g-~F~Mr~~v~~~~~~~~~~~L~~~L~~l 109 (321)
-+++....+||...++|..++++|+||+..+|+... +| .=+..|+++ . ..+++.|.++++..
T Consensus 4 ~lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~-~g~~~~iYmEiE--g-i~d~e~l~~~lks~ 66 (218)
T COG1707 4 GLSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEK-DGEKALIYMEIE--G-IDDFEKLLERLKSF 66 (218)
T ss_pred eeEEEeecCccHHHHHHHHHHhcCCceEeeehhhhc-cCceEEEEEEee--C-CCCHHHHHHHhhcc
Confidence 367788999999999999999999999999999743 44 333444444 2 23678888877754
No 92
>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee
Probab=94.80 E-value=0.18 Score=36.76 Aligned_cols=66 Identities=18% Similarity=0.129 Sum_probs=42.8
Q ss_pred EEEEEc-CCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHHHHHhh
Q 020794 44 IHVFHC-PDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFN 114 (321)
Q Consensus 44 Iltv~G-~Dr~GIVA~VS~~La~~G~NI~d~~q~~~~l~g~F~Mr~~v~~~~~~~~~~~L~~~L~~la~~lg 114 (321)
.+++.| +|++|+.+++.+.|+++|+||.-+.|.... .+ .+.+.+.+++. +.+...+.+....++++
T Consensus 3 ~v~v~~~~~~~g~~~~i~~~L~~~~I~i~~i~~~~~~-~~--~~~is~~v~~~--d~~~~~~~l~~~~~~~~ 69 (75)
T cd04913 3 KITLRGVPDKPGVAAKIFGALAEANINVDMIVQNVSR-DG--TTDISFTVPKS--DLKKALAVLEKLKKELG 69 (75)
T ss_pred EEEECCCCCCCcHHHHHHHHHHHcCCeEEEEEeCCCC-CC--cEEEEEEecHH--HHHHHHHHHHHHHHHcC
Confidence 344443 689999999999999999999998886432 22 24444555432 34555555555554443
No 93
>PRK03381 PII uridylyl-transferase; Provisional
Probab=94.75 E-value=0.14 Score=55.55 Aligned_cols=41 Identities=17% Similarity=0.243 Sum_probs=36.0
Q ss_pred CCcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeecc
Q 020794 38 PTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVP 78 (321)
Q Consensus 38 ~~~~~~Iltv~G~Dr~GIVA~VS~~La~~G~NI~d~~q~~~ 78 (321)
+.....+|+|.|+||||++++||+.|+++|+||.+..-+..
T Consensus 703 ~~~~~t~i~V~a~DrpGLla~Ia~~L~~~~lnI~~AkI~T~ 743 (774)
T PRK03381 703 ASPDATVLEVRAADRPGLLARLARALERAGVDVRWARVATL 743 (774)
T ss_pred CCCCeEEEEEEeCCchhHHHHHHHHHHHCCCeEEEEEEeec
Confidence 33456899999999999999999999999999999877753
No 94
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=94.67 E-value=0.071 Score=53.70 Aligned_cols=65 Identities=15% Similarity=0.111 Sum_probs=44.7
Q ss_pred CcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHH
Q 020794 39 TLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKL 109 (321)
Q Consensus 39 ~~~~~Iltv~G~Dr~GIVA~VS~~La~~G~NI~d~~q~~~~l~g~F~Mr~~v~~~~~~~~~~~L~~~L~~l 109 (321)
....+.|++.-.|+||+|++||+.|+++|+||-.+.-.. .++.=.|.+ ++++ . ..+++.+.|+++
T Consensus 335 ~~~~~rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~~--~~~~A~~ii--e~D~-~-~~~~~~~~i~~i 399 (409)
T PRK11790 335 HPGGHRLLHIHENRPGVLAAINQIFAEQGINIAAQYLQT--DGEIGYVVI--DVDA-D-YAEEALDALKAI 399 (409)
T ss_pred CCCCceEEEEeCCCCCHHHHHHHHHHhcCCCHHHheecc--CCCEEEEEE--EeCC-C-CcHHHHHHHHcC
Confidence 335567777889999999999999999999998887753 233333444 4443 1 234566666643
No 95
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.43 E-value=0.5 Score=38.05 Aligned_cols=67 Identities=16% Similarity=0.145 Sum_probs=46.2
Q ss_pred EEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccC-CCCeEEEEEEEEeCCCCCChHHHHHHHHHHHHHhhh
Q 020794 45 HVFHCPDEVGIVAKLSECIASRGGNILAADVFVPE-KKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNA 115 (321)
Q Consensus 45 ltv~G~Dr~GIVA~VS~~La~~G~NI~d~~q~~~~-l~g~F~Mr~~v~~~~~~~~~~~L~~~L~~la~~lg~ 115 (321)
+.+..+|+||-.+.+=+.++++|+|++.+...-.. ..+.|.-.++++.. ..+.+++.|+.+.+.+|+
T Consensus 17 lif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfVDieg~----~~~~~~~~l~~L~~~~~~ 84 (90)
T cd04931 17 LIFSLKEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFINLDKK----SAPALDPIIKSLRNDIGA 84 (90)
T ss_pred EEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEcC----CCHHHHHHHHHHHHHhCC
Confidence 44444999999999999999999999998776321 12223333444432 237788888888877764
No 96
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=94.17 E-value=0.28 Score=52.84 Aligned_cols=69 Identities=12% Similarity=0.096 Sum_probs=56.8
Q ss_pred CCcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHHHH
Q 020794 38 PTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSK 111 (321)
Q Consensus 38 ~~~~~~Iltv~G~Dr~GIVA~VS~~La~~G~NI~d~~q~~~~l~g~F~Mr~~v~~~~~~~~~~~L~~~L~~la~ 111 (321)
+....+-|.|.+-||+|+.+.|++.|++.++||+.++...+ .++.+.|.+.+.+.+ ..+|..-+.++-+
T Consensus 623 ~~~f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~-~~~~~~~~~~i~v~n----~~~L~~i~~~l~~ 691 (701)
T COG0317 623 GQVYPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSD-KDQFATMQFTIEVKN----LNHLGRVLARLKQ 691 (701)
T ss_pred CcceEEEEEEEEccccchHHHHHHHHHhCCCceEEeecccc-CCceEEEEEEEEECc----HHHHHHHHHHHhc
Confidence 55667889999999999999999999999999999998865 566777999998864 5666666666544
No 97
>PRK05092 PII uridylyl-transferase; Provisional
Probab=93.88 E-value=0.27 Score=54.46 Aligned_cols=38 Identities=16% Similarity=0.192 Sum_probs=34.5
Q ss_pred cccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeec
Q 020794 40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFV 77 (321)
Q Consensus 40 ~~~~Iltv~G~Dr~GIVA~VS~~La~~G~NI~d~~q~~ 77 (321)
....++.|.|+||||+++.|+++|+++|+||.+..-..
T Consensus 841 ~~~t~i~I~~~DrpGLl~~I~~~l~~~gl~I~~A~I~T 878 (931)
T PRK05092 841 NRFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIAT 878 (931)
T ss_pred CCeEEEEEEECCcCcHHHHHHHHHHHCCceEEEEEEEE
Confidence 34589999999999999999999999999999987764
No 98
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=93.87 E-value=0.23 Score=49.01 Aligned_cols=39 Identities=26% Similarity=0.139 Sum_probs=33.2
Q ss_pred CCcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeee
Q 020794 38 PTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVF 76 (321)
Q Consensus 38 ~~~~~~Iltv~G~Dr~GIVA~VS~~La~~G~NI~d~~q~ 76 (321)
..+..+.+++.=+|+||..+++++.++++|+||+++...
T Consensus 301 ~~gr~~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~ 339 (380)
T TIGR01127 301 KSGRKVRIETVLPDRPGALYHLLESIAEARANIVKIDHD 339 (380)
T ss_pred hCCCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEee
Confidence 345556777788999999999999999999999998654
No 99
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=93.65 E-value=0.088 Score=54.63 Aligned_cols=64 Identities=13% Similarity=0.119 Sum_probs=45.1
Q ss_pred ccCCCCcccCCCCCCcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEe
Q 020794 25 LKFPGEPIESSVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIF 92 (321)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~Iltv~G~Dr~GIVA~VS~~La~~G~NI~d~~q~~~~l~g~F~Mr~~v~~ 92 (321)
-+.++++.+-++ ....+.+...|+||+|+.|++.|+++|+||-.++......+|.-.|.++++-
T Consensus 439 ~~ing~~v~~~~----~~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~r~~~g~~al~~i~~D~ 502 (526)
T PRK13581 439 VEIDGYRVDAKP----EGHMLIIRNRDRPGVIGKVGTLLGEAGINIAGMQLGRREAGGEALMVLSVDD 502 (526)
T ss_pred EEECCEEEEeeC----CceEEEEEeCCcCChhHHHHHHHhhcCCCchhcEeccCCCCCeEEEEEECCC
Confidence 345666655444 2234455669999999999999999999999988775434455556666653
No 100
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=93.44 E-value=0.081 Score=54.89 Aligned_cols=64 Identities=14% Similarity=0.115 Sum_probs=45.6
Q ss_pred ccCCCCcccCCCCCCcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEe
Q 020794 25 LKFPGEPIESSVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIF 92 (321)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~Iltv~G~Dr~GIVA~VS~~La~~G~NI~d~~q~~~~l~g~F~Mr~~v~~ 92 (321)
-+.++++.+-++.. ..+.+...|+||+|+.|++.|.++++||-.++......+|.-.|.+++|-
T Consensus 438 ~~ing~~v~~~~~~----~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~R~~~g~~al~~i~~D~ 501 (525)
T TIGR01327 438 VEIDGFHVDLEPEG----IMLIILHLDKPGVIGKVGTLLGTAGINIASMQLGRKEKGGEALMLLSLDQ 501 (525)
T ss_pred EEECCEEEEEecCc----cEEEEEecCcCCcchHHHhHHhhcCCChHHcEeecCCCCCeEEEEEEcCC
Confidence 35566666544332 33455569999999999999999999999987765444566666676663
No 101
>PLN02342 ornithine carbamoyltransferase
Probab=93.44 E-value=0.5 Score=46.95 Aligned_cols=59 Identities=19% Similarity=0.256 Sum_probs=39.0
Q ss_pred HHHhcCCCEEEEEeeccccchhhHhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeEEecCCCCCCCCC
Q 020794 199 LELVQNTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKG 272 (321)
Q Consensus 199 ~~~l~~~Dlivlag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~l~~~~~~~INiHpslLP~yrG 272 (321)
.+.++++|++.+-.|..-. ++|.+. .....+.+|.+..++++..+..++=+|| ||++||
T Consensus 254 ~eav~~aDVvy~~~W~s~~--~~e~~~-----------~~~~~~~~y~vt~ell~~ak~~aivMHp--LP~~rg 312 (348)
T PLN02342 254 AEAVKGADVVYTDVWASMG--QKEEAE-----------KRKKAFQGFQVNEALMKLAGPQAYFMHC--LPAERG 312 (348)
T ss_pred HHHhCCCCEEEECCccccc--cchhhH-----------HHHHhccCCccCHHHHhccCCCcEEeCC--CCcCCC
Confidence 3445589999887764311 111110 0112244679999999999888999999 899987
No 102
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an
Probab=93.12 E-value=0.92 Score=31.66 Aligned_cols=34 Identities=18% Similarity=0.186 Sum_probs=30.7
Q ss_pred EEEEEcC---CccchHHHHHHHHHhcCCeEeEeeeec
Q 020794 44 IHVFHCP---DEVGIVAKLSECIASRGGNILAADVFV 77 (321)
Q Consensus 44 Iltv~G~---Dr~GIVA~VS~~La~~G~NI~d~~q~~ 77 (321)
+++++|. +++|+++++.+.|+++|+|+.-+.|..
T Consensus 2 ~i~i~g~~~~~~~~~~~~i~~~l~~~~i~v~~i~~~~ 38 (65)
T cd04892 2 LVSVVGAGMRGTPGVAARIFSALAEAGINIIMISQGS 38 (65)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCcEEEEEcCC
Confidence 5788887 889999999999999999999999864
No 103
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=93.05 E-value=0.37 Score=36.83 Aligned_cols=60 Identities=17% Similarity=0.199 Sum_probs=39.9
Q ss_pred EEcCCccchHHHHHHHHHhcCCeEeEeeeeccCC-CCeEEEEEEEEeCCCCCChHHHHHHHHHHHH
Q 020794 47 FHCPDEVGIVAKLSECIASRGGNILAADVFVPEK-KNVFYSRSEFIFDPIKWPREQMDEDFFKLSK 111 (321)
Q Consensus 47 v~G~Dr~GIVA~VS~~La~~G~NI~d~~q~~~~l-~g~F~Mr~~v~~~~~~~~~~~L~~~L~~la~ 111 (321)
+.-+|+||-.+.|=+.++++|+|++.+...-... .+.|.-.++++. ..+.+++.++.+.+
T Consensus 5 f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~~~-----~~~~~~~~l~~L~~ 65 (74)
T cd04904 5 FSLKEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDCEV-----DRGDLDQLISSLRR 65 (74)
T ss_pred EEeCCCCcHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEEEc-----ChHHHHHHHHHHHH
Confidence 3348999999999999999999999998763221 222333344443 23456666766644
No 104
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=93.04 E-value=1.2 Score=48.77 Aligned_cols=104 Identities=13% Similarity=0.112 Sum_probs=73.8
Q ss_pred CcccEEEEEEcC---CccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHHHHHhhh
Q 020794 39 TLTHGIHVFHCP---DEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNA 115 (321)
Q Consensus 39 ~~~~~Iltv~G~---Dr~GIVA~VS~~La~~G~NI~d~~q~~~~l~g~F~Mr~~v~~~~~~~~~~~L~~~L~~la~~lg~ 115 (321)
.....+|+++|. +++|+.+++-+.|++.|+||.-++|... +-... +-+ +.+...+++..+-++|-.
T Consensus 393 ~~~valIsvvG~gm~~~~gv~arif~aL~~~~InI~~IsqgsS--e~~Is----~vV-----~~~d~~~al~~LH~~f~~ 461 (819)
T PRK09436 393 EENLAIISVVGDGMRTHPGIAAKFFSALGRANINIVAIAQGSS--ERSIS----VVI-----DNDDATKALRACHQSFFL 461 (819)
T ss_pred eCCEEEEEEEccCcccCcCHHHHHHHHHHHCCCCEEEEEeccc--cceEE----EEE-----cHHHHHHHHHHHHHHHhc
Confidence 345678999997 7899999999999999999999998642 21222 222 235567788888787732
Q ss_pred ccceeeeCCCCCCeeEEEEEeCC-chhHHHHHHhhh----cCCcCeeEEEEE
Q 020794 116 MRSVVRVPDIDPKYKVAVLASKQ-EHCLVDFLYGWQ----EGKLPVEITCVI 162 (321)
Q Consensus 116 ~~~~~r~~~~~~~~rIavl~S~~-g~~l~~lL~~~~----~~~l~~~i~~Vi 162 (321)
..++++|+++|-|. |..+..+|...+ +..++.+|++|.
T Consensus 462 ---------~~~~~~i~l~G~G~VG~~~~~~l~~~~~~l~~~~~~l~v~~i~ 504 (819)
T PRK09436 462 ---------SDQVLDVFVIGVGGVGGALLEQIKRQQPWLKKKNIDLRVCGIA 504 (819)
T ss_pred ---------ccccccEEEEecCHHHHHHHHHHHHHHHHHHhcCCcEEEEEEE
Confidence 23688999999887 777777665422 123567777764
No 105
>PRK03059 PII uridylyl-transferase; Provisional
Probab=92.96 E-value=0.92 Score=50.01 Aligned_cols=41 Identities=12% Similarity=0.110 Sum_probs=35.9
Q ss_pred CCCcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeec
Q 020794 37 SPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFV 77 (321)
Q Consensus 37 ~~~~~~~Iltv~G~Dr~GIVA~VS~~La~~G~NI~d~~q~~ 77 (321)
.+.....+|.|.++||||+.+.|++.|+.+|+||.+..-+.
T Consensus 781 ~~~~~~T~i~V~a~DrpGLLa~Ia~~L~~~~l~I~~AkI~T 821 (856)
T PRK03059 781 DERGQYYILSVSANDRPGLLYAIARVLAEHRVSVHTAKINT 821 (856)
T ss_pred cCCCCEEEEEEEeCCcchHHHHHHHHHHHCCCeEEEEEEee
Confidence 44456779999999999999999999999999999976664
No 106
>PRK04374 PII uridylyl-transferase; Provisional
Probab=92.91 E-value=0.23 Score=54.72 Aligned_cols=42 Identities=14% Similarity=0.131 Sum_probs=36.5
Q ss_pred CCCcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeecc
Q 020794 37 SPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVP 78 (321)
Q Consensus 37 ~~~~~~~Iltv~G~Dr~GIVA~VS~~La~~G~NI~d~~q~~~ 78 (321)
.+.....+|.|.++||||+.+.|++.|+++|+||.+..-+..
T Consensus 791 ~~~~~~t~leI~a~DrpGLLa~Ia~~l~~~~l~I~~AkI~T~ 832 (869)
T PRK04374 791 SAGGRRTRISLVAPDRPGLLADVAHVLRMQHLRVHDARIATF 832 (869)
T ss_pred cCCCCeEEEEEEeCCcCcHHHHHHHHHHHCCCeEEEeEEEec
Confidence 344567899999999999999999999999999999776643
No 107
>PRK08198 threonine dehydratase; Provisional
Probab=92.66 E-value=0.29 Score=48.77 Aligned_cols=40 Identities=28% Similarity=0.211 Sum_probs=34.8
Q ss_pred CCCcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeee
Q 020794 37 SPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVF 76 (321)
Q Consensus 37 ~~~~~~~Iltv~G~Dr~GIVA~VS~~La~~G~NI~d~~q~ 76 (321)
......+.+.|.=+|+||..+++.+.++++|+||+++++.
T Consensus 322 ~~~gr~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~ 361 (404)
T PRK08198 322 VAAGRYLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHD 361 (404)
T ss_pred hhcCCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEE
Confidence 4455666777778999999999999999999999999886
No 108
>PRK04374 PII uridylyl-transferase; Provisional
Probab=92.57 E-value=0.48 Score=52.32 Aligned_cols=46 Identities=20% Similarity=0.227 Sum_probs=38.1
Q ss_pred CCCcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCe
Q 020794 37 SPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNV 83 (321)
Q Consensus 37 ~~~~~~~Iltv~G~Dr~GIVA~VS~~La~~G~NI~d~~q~~~~l~g~ 83 (321)
.+.....-|+|.++||+|+.|.+++.|+.+|.||++.+-+.. .+|.
T Consensus 685 ~~~~~~~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~-~~g~ 730 (869)
T PRK04374 685 VPDNDALEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDA-PHDA 730 (869)
T ss_pred ccCCCeEEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEc-CCCE
Confidence 444455678999999999999999999999999999888753 3454
No 109
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=92.55 E-value=0.72 Score=50.77 Aligned_cols=53 Identities=11% Similarity=0.121 Sum_probs=40.1
Q ss_pred CCCcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEE
Q 020794 37 SPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEF 90 (321)
Q Consensus 37 ~~~~~~~Iltv~G~Dr~GIVA~VS~~La~~G~NI~d~~q~~~~l~g~F~Mr~~v 90 (321)
.+......|+|.++||+|+.+.|+++|+.+|.||.+..-+.. .+|.-.=.+.|
T Consensus 672 ~~~~~~t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~-~~g~alD~F~V 724 (854)
T PRK01759 672 RFSRGGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITS-QDGYVLDSFIV 724 (854)
T ss_pred cCCCCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEc-cCCEEEEEEEE
Confidence 334455689999999999999999999999999999876542 34554333333
No 110
>PRK05007 PII uridylyl-transferase; Provisional
Probab=92.40 E-value=0.78 Score=50.73 Aligned_cols=46 Identities=15% Similarity=0.181 Sum_probs=37.6
Q ss_pred CCcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeE
Q 020794 38 PTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVF 84 (321)
Q Consensus 38 ~~~~~~Iltv~G~Dr~GIVA~VS~~La~~G~NI~d~~q~~~~l~g~F 84 (321)
+......|+|.++||+|+.+.|++.|+.+|.||.+..-+.. .+|..
T Consensus 697 ~~~~~t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~-~dg~a 742 (884)
T PRK05007 697 ATRGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTS-RDGMA 742 (884)
T ss_pred CCCCeEEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEEc-CCCeE
Confidence 34456789999999999999999999999999999875543 34554
No 111
>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]
Probab=92.08 E-value=1.5 Score=39.30 Aligned_cols=74 Identities=20% Similarity=0.214 Sum_probs=55.4
Q ss_pred cccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHHHHHhhh
Q 020794 40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNA 115 (321)
Q Consensus 40 ~~~~Iltv~G~Dr~GIVA~VS~~La~~G~NI~d~~q~~~~l~g~F~Mr~~v~~~~~~~~~~~L~~~L~~la~~lg~ 115 (321)
.|+-++++.=.|.||..+.|++..+..|.||..+.....+..+ ..||.+.........+|+.+.|.++-+-+++
T Consensus 2 ~m~rilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~tE~~~--~SRiTivv~g~~~~~EQi~kQL~kLidV~kV 75 (163)
T COG0440 2 PMRRILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPG--LSRITIVVSGDEQVLEQIIKQLNKLIDVLKV 75 (163)
T ss_pred CceEEEEEEEECCCCeeehhhHHHHhcCcccceEEEEecCCCC--ceEEEEEEcCCcchHHHHHHHHHhhccceeE
Confidence 4667788888999999999999999999999998776544444 4466655544334578888888877665554
No 112
>PRK08818 prephenate dehydrogenase; Provisional
Probab=92.03 E-value=0.71 Score=46.21 Aligned_cols=57 Identities=16% Similarity=0.133 Sum_probs=38.4
Q ss_pred EEEEcC-CccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHH
Q 020794 45 HVFHCP-DEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDED 105 (321)
Q Consensus 45 ltv~G~-Dr~GIVA~VS~~La~~G~NI~d~~q~~~~l~g~F~Mr~~v~~~~~~~~~~~L~~~ 105 (321)
+.+.=+ |+||.+++|.+.|+.+|+||.++.-. ....+.|..++.+...+ +.++|..+
T Consensus 298 l~~~v~~d~pG~L~~vl~~la~~~INit~Ies~-~~r~~~y~f~i~~~~~~---~~~~~~~~ 355 (370)
T PRK08818 298 LSVYLPEDRPGSLRTLLHVFEQHGVNLSSIHSS-RTPAGELHFRIGFEPGS---DRAALARA 355 (370)
T ss_pred EEEECCCCCCChHHHHHHHHHHcCcccceEEEe-cccCceEEEEEEEeccc---cHHHHHHH
Confidence 333336 99999999999999999999998873 23345555455555432 44444433
No 113
>PRK05007 PII uridylyl-transferase; Provisional
Probab=92.02 E-value=0.25 Score=54.53 Aligned_cols=49 Identities=16% Similarity=0.198 Sum_probs=39.1
Q ss_pred CCcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeee--ccCCCCeEEE
Q 020794 38 PTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVF--VPEKKNVFYS 86 (321)
Q Consensus 38 ~~~~~~Iltv~G~Dr~GIVA~VS~~La~~G~NI~d~~q~--~~~l~g~F~M 86 (321)
.+....+|-|.++||||+.+.|++.|+++|+||....-+ .....+.|+.
T Consensus 804 ~s~~~TvlEV~a~DRpGLL~~I~~~l~~~~l~I~~AkI~T~gera~DvFyV 854 (884)
T PRK05007 804 HTDRRSYMELIALDQPGLLARVGKIFADLGISLHGARITTIGERVEDLFIL 854 (884)
T ss_pred CCCCeEEEEEEeCCchHHHHHHHHHHHHCCcEEEEEEEeccCceEEEEEEE
Confidence 346678999999999999999999999999999985444 3444455663
No 114
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=91.87 E-value=1.9 Score=30.91 Aligned_cols=35 Identities=20% Similarity=0.119 Sum_probs=30.6
Q ss_pred EEEEEEc---CCccchHHHHHHHHHhcCCeEeEeeeec
Q 020794 43 GIHVFHC---PDEVGIVAKLSECIASRGGNILAADVFV 77 (321)
Q Consensus 43 ~Iltv~G---~Dr~GIVA~VS~~La~~G~NI~d~~q~~ 77 (321)
.++++.| ++.+|+.+++.+.|+++|+|+.-++|..
T Consensus 2 ~~isvvg~~~~~~~~~~~~i~~~l~~~~I~v~~i~~~~ 39 (66)
T cd04922 2 SILALVGDGMAGTPGVAATFFSALAKANVNIRAIAQGS 39 (66)
T ss_pred eEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 4678888 4889999999999999999999988853
No 115
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=91.74 E-value=1.8 Score=42.64 Aligned_cols=31 Identities=23% Similarity=0.330 Sum_probs=24.5
Q ss_pred cccccCChhHHhhcC-CCeEEecCCCCCCCCCCh
Q 020794 242 YFNMILSGKFLRSYG-KDVINIHHGLLPSFKGGK 274 (321)
Q Consensus 242 ~~~~il~~~~l~~~~-~~~INiHpslLP~yrG~~ 274 (321)
+.+|.+.+++++..+ ..++=+|| ||++||..
T Consensus 250 ~~~y~v~~e~l~~a~~~~~ivmHp--lP~~r~~e 281 (332)
T PRK04284 250 LKPYQVNKEMMKKTGNPNAIFEHC--LPSFHDLD 281 (332)
T ss_pred ccCCcCCHHHHhhcCCCCcEEECC--CCCCCCcc
Confidence 446699999999875 37999998 78887643
No 116
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=91.58 E-value=0.96 Score=50.12 Aligned_cols=49 Identities=12% Similarity=0.057 Sum_probs=38.0
Q ss_pred ccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEE
Q 020794 41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEF 90 (321)
Q Consensus 41 ~~~Iltv~G~Dr~GIVA~VS~~La~~G~NI~d~~q~~~~l~g~F~Mr~~v 90 (321)
.-..|+|.|+||||+.+.++++|+.+|.||.+.+-+.. .+|...=...|
T Consensus 703 ~~t~V~V~~~DrpgLFa~i~g~L~~~~lnI~~A~I~Tt-~dg~alD~F~V 751 (895)
T PRK00275 703 GGTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITS-SSQFTLDTYIV 751 (895)
T ss_pred CeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEc-CCCeEEEEEEE
Confidence 45688999999999999999999999999999886542 34553333333
No 117
>PRK06382 threonine dehydratase; Provisional
Probab=91.51 E-value=0.69 Score=46.38 Aligned_cols=39 Identities=31% Similarity=0.313 Sum_probs=33.5
Q ss_pred CCcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeee
Q 020794 38 PTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVF 76 (321)
Q Consensus 38 ~~~~~~Iltv~G~Dr~GIVA~VS~~La~~G~NI~d~~q~ 76 (321)
-......+++.=+|+||..++|++.++++|+||+++...
T Consensus 326 ~~~~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~ 364 (406)
T PRK06382 326 NLGQLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVD 364 (406)
T ss_pred hcCCEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEe
Confidence 345566778888999999999999999999999998764
No 118
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=91.33 E-value=6.6 Score=33.88 Aligned_cols=121 Identities=16% Similarity=0.109 Sum_probs=70.3
Q ss_pred EEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEE-EEEEEEeCCCCCChHHHHHHHHHHHHHhhhccceeee
Q 020794 44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFY-SRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRV 122 (321)
Q Consensus 44 Iltv~G~Dr~GIVA~VS~~La~~G~NI~d~~q~~~~l~g~F~-Mr~~v~~~~~~~~~~~L~~~L~~la~~lg~~~~~~r~ 122 (321)
-++++-..|||-.+.+++.|.++|+||-..+-.. .|.|- .||.++-| +.-.+.|++ -|. +.|.
T Consensus 5 QISvFlENk~GRL~~~~~~L~eagINiRA~tiAd---t~dFGIiRmvV~~~------d~A~~~Lee----~gF---~Vr~ 68 (142)
T COG4747 5 QISVFLENKPGRLASVANKLKEAGINIRAFTIAD---TGDFGIIRMVVDRP------DEAHSVLEE----AGF---TVRE 68 (142)
T ss_pred EEEEEecCCcchHHHHHHHHHHcCCceEEEEecc---ccCcceEEEEcCCh------HHHHHHHHH----CCc---EEEe
Confidence 4788889999999999999999999999987753 56665 67766543 222334442 222 3444
Q ss_pred CCCCCCeeEEEEEeCCchhHHHHHHhhhcCCcCeeEE-EEEeCCCCCC-------CchHHHHHHHcCCCEE
Q 020794 123 PDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEIT-CVISNHDRGP-------NSHVIRFLERHGIPYH 185 (321)
Q Consensus 123 ~~~~~~~rIavl~S~~g~~l~~lL~~~~~~~l~~~i~-~Vis~~~~~~-------~~~v~~~a~~~gIP~~ 185 (321)
++ =+||=.-.....|..++.....-.++.+-. +.++.+++.- -....+..+.+|||+.
T Consensus 69 ~d-----VlaVEmeD~PG~l~~I~~vl~d~diNldYiYAFv~ek~KAlli~r~ed~d~~~~aLed~gi~~~ 134 (142)
T COG4747 69 TD-----VLAVEMEDVPGGLSRIAEVLGDADINLDYIYAFVTEKQKALLIVRVEDIDRAIKALEDAGIKLI 134 (142)
T ss_pred ee-----EEEEEecCCCCcHHHHHHHHhhcCcCceeeeeeeecCceEEEEEEhhHHHHHHHHHHHcCCeec
Confidence 33 355555444444555555544444444332 2333221110 1234555677788765
No 119
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=91.17 E-value=0.31 Score=53.55 Aligned_cols=48 Identities=17% Similarity=0.246 Sum_probs=38.5
Q ss_pred CCcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeee--ccCCCCeEE
Q 020794 38 PTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVF--VPEKKNVFY 85 (321)
Q Consensus 38 ~~~~~~Iltv~G~Dr~GIVA~VS~~La~~G~NI~d~~q~--~~~l~g~F~ 85 (321)
.+....+|-|.++||||+.+.|++.+++.|+||....-+ .....+.|+
T Consensus 779 ~s~~~T~iev~a~DrpGLL~~I~~~l~~~~l~i~~AkI~T~gerv~D~Fy 828 (854)
T PRK01759 779 EKQEQTEMELFALDRAGLLAQVSQVFSELNLNLLNAKITTIGEKAEDFFI 828 (854)
T ss_pred CCCCeEEEEEEeCCchHHHHHHHHHHHHCCCEEEEEEEcccCceEEEEEE
Confidence 346678999999999999999999999999999995544 333344565
No 120
>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]
Probab=91.05 E-value=0.33 Score=46.54 Aligned_cols=69 Identities=20% Similarity=0.137 Sum_probs=51.2
Q ss_pred cccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHHH
Q 020794 40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLS 110 (321)
Q Consensus 40 ~~~~Iltv~G~Dr~GIVA~VS~~La~~G~NI~d~~q~~~~l~g~F~Mr~~v~~~~~~~~~~~L~~~L~~la 110 (321)
..+-++.+.-.|-+|++..|++.|+..|.||..+-.-..+-+..|-|.+.+.-.+. -.+|.++.++++-
T Consensus 75 ~krHvinclVqnEpGvlsRisGvlAaRGfNIdSLvVc~tevk~LsrmTIVl~Gtd~--VveQa~rQiedlV 143 (309)
T KOG2663|consen 75 VKRHVINCLVQNEPGVLSRISGVLAARGFNIDSLVVCLTEVKALSRMTIVLQGTDG--VVEQARRQIEDLV 143 (309)
T ss_pred ccceeEEEEecCCchHHHHHHHHHHhccCCchheeeechhhhhhhhceEEEeccHH--HHHHHHHHHHHhh
Confidence 45568888889999999999999999999998865444455777888888875431 2555555565543
No 121
>COG2150 Predicted regulator of amino acid metabolism, contains ACT domain [General function prediction only]
Probab=90.98 E-value=0.58 Score=41.90 Aligned_cols=57 Identities=25% Similarity=0.123 Sum_probs=42.3
Q ss_pred CCCCCcccEEEEEEc--CCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEE
Q 020794 35 SVSPTLTHGIHVFHC--PDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFI 91 (321)
Q Consensus 35 ~~~~~~~~~Iltv~G--~Dr~GIVA~VS~~La~~G~NI~d~~q~~~~l~g~F~Mr~~v~ 91 (321)
..+|.+-.-|+++.- ++.|||+|+|++.|+++||+|.++-...+++++.=+.++..+
T Consensus 86 ~vA~~lG~gViei~~~~~~~pgi~A~V~~~iak~gi~Irqi~~~dpe~~~e~~l~IVte 144 (167)
T COG2150 86 DVAPLLGLGVIEIYPEDARYPGILAGVASLIAKRGISIRQIISEDPELQEEPKLTIVTE 144 (167)
T ss_pred HHHHhcCCeEEEEEeccCCCccHHHHHHHHHHHcCceEEEEecCCcccCCCceEEEEEe
Confidence 345566666777765 667999999999999999999998766554555545566565
No 122
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=90.98 E-value=1.1 Score=49.70 Aligned_cols=39 Identities=13% Similarity=0.163 Sum_probs=34.8
Q ss_pred cccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeecc
Q 020794 40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVP 78 (321)
Q Consensus 40 ~~~~Iltv~G~Dr~GIVA~VS~~La~~G~NI~d~~q~~~ 78 (321)
....+|.|.++||||+.+.|++.|+++|+||.+..-+..
T Consensus 812 ~~~T~i~V~a~DrpGLLa~I~~~L~~~~l~I~~AkI~T~ 850 (895)
T PRK00275 812 RPVTVLEIIAPDRPGLLARIGRIFLEFDLSLQNAKIATL 850 (895)
T ss_pred CCeEEEEEEECCCCCHHHHHHHHHHHCCCEEEEeEEEec
Confidence 456799999999999999999999999999999877643
No 123
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=90.74 E-value=0.51 Score=48.89 Aligned_cols=90 Identities=18% Similarity=0.277 Sum_probs=56.5
Q ss_pred EEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHHHHHhhhccceeeeC
Q 020794 44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRVP 123 (321)
Q Consensus 44 Iltv~G~Dr~GIVA~VS~~La~~G~NI~d~~q~~~~l~g~F~Mr~~v~~~~~~~~~~~L~~~L~~la~~lg~~~~~~r~~ 123 (321)
.+-|+|.||.||+..|.+.|+.+++|+..+... + .| ++.+.+++. +++.++.-+.++. +++
T Consensus 2 rl~~~~~dr~g~~~~~l~~~~~~~~~~~~~e~~--~-~~----~~~~~~~~~--~~~~~~~~~~~~~----------~~~ 62 (520)
T PRK10820 2 RLEVFCEDRLGLTRELLDLLVLRSIDLRGIEID--P-IG----RIYLNFAEL--EFESFSSLMAEIR----------RIA 62 (520)
T ss_pred eEEEEeeccccHHHHHHHHHHhcCCCccEEEEc--C-CC----eEEEeCCCc--ChhhHHHHHHHHh----------cCC
Confidence 367899999999999999999999999998774 2 23 355666643 4444433333221 122
Q ss_pred CCCCCeeEEEEEeCCch-hHHHHHHhhhcC
Q 020794 124 DIDPKYKVAVLASKQEH-CLVDFLYGWQEG 152 (321)
Q Consensus 124 ~~~~~~rIavl~S~~g~-~l~~lL~~~~~~ 152 (321)
.....++|.++-+-..+ -|+++|+...+|
T Consensus 63 gv~~~~~~~~~~~e~e~~~L~aIL~sm~eG 92 (520)
T PRK10820 63 GVTDVRTVPFMPSEREHRALSALLEALPEP 92 (520)
T ss_pred CccchhhhccChHHHHHHHHHHHHHhCCCc
Confidence 33334456666544433 367777776555
No 124
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=90.58 E-value=2.6 Score=35.42 Aligned_cols=64 Identities=5% Similarity=0.005 Sum_probs=41.5
Q ss_pred ccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccC-CCCeEEEEEEEEeCCCCCChHHHHHHHHHHHH
Q 020794 41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPE-KKNVFYSRSEFIFDPIKWPREQMDEDFFKLSK 111 (321)
Q Consensus 41 ~~~Iltv~G~Dr~GIVA~VS~~La~~G~NI~d~~q~~~~-l~g~F~Mr~~v~~~~~~~~~~~L~~~L~~la~ 111 (321)
...++++ +|+||-.+.|=+.++.+|+|++.+...-.. ..+.|.-.++++.. .+.++..|+.+.+
T Consensus 42 tSlifsl--~~~pGsL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfIdieg~-----~~~~~~aL~~L~~ 106 (115)
T cd04930 42 ATLLFSL--KEGFSSLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLVRCEVH-----RSDLLQLISSLRQ 106 (115)
T ss_pred EEEEEEe--CCCCcHHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEEEEEeC-----HHHHHHHHHHHHH
Confidence 3445554 999999999999999999999999776321 12333333444432 2346666666543
No 125
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=90.56 E-value=1.6 Score=47.97 Aligned_cols=42 Identities=21% Similarity=0.209 Sum_probs=35.9
Q ss_pred cccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCC
Q 020794 40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKN 82 (321)
Q Consensus 40 ~~~~Iltv~G~Dr~GIVA~VS~~La~~G~NI~d~~q~~~~l~g 82 (321)
.....|+|.++||+|+.+.|++.|+.+|+||.+.+-+.. .+|
T Consensus 666 ~~~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~tt-~~g 707 (850)
T TIGR01693 666 SGGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTT-KDG 707 (850)
T ss_pred CCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEe-cCC
Confidence 455689999999999999999999999999999877732 245
No 126
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=90.46 E-value=2.3 Score=31.14 Aligned_cols=58 Identities=16% Similarity=0.216 Sum_probs=40.3
Q ss_pred EEEEEEcC---CccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHHHHHh
Q 020794 43 GIHVFHCP---DEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMF 113 (321)
Q Consensus 43 ~Iltv~G~---Dr~GIVA~VS~~La~~G~NI~d~~q~~~~l~g~F~Mr~~v~~~~~~~~~~~L~~~L~~la~~l 113 (321)
.+++++|. +++|+.+++-+.|.++|+|+.-+.+. +- .+.+-+ +.+...+++..+-++|
T Consensus 2 ~~isvvG~~~~~~~gi~~~if~aL~~~~I~v~~~~~S----e~----~is~~v-----~~~~~~~av~~Lh~~f 62 (64)
T cd04937 2 AKVTIIGSRIRGVPGVMAKIVGALSKEGIEILQTADS----HT----TISCLV-----SEDDVKEAVNALHEAF 62 (64)
T ss_pred eEEEEECCCccCCcCHHHHHHHHHHHCCCCEEEEEcC----cc----EEEEEE-----cHHHHHHHHHHHHHHh
Confidence 46889996 88999999999999999999765542 11 122222 2355566677666655
No 127
>PRK06545 prephenate dehydrogenase; Validated
Probab=90.36 E-value=0.66 Score=45.62 Aligned_cols=52 Identities=17% Similarity=0.279 Sum_probs=37.9
Q ss_pred ccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCC
Q 020794 41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDP 94 (321)
Q Consensus 41 ~~~Iltv~G~Dr~GIVA~VS~~La~~G~NI~d~~q~~~~l~g~F~Mr~~v~~~~ 94 (321)
..+-|.|.=||+||.++.|++.|+++|+||.|+.-- +..+.=...+.+.+..
T Consensus 289 ~~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~--~~~~~~~g~~~~~~~~ 340 (359)
T PRK06545 289 SFYDLYVDVPDEPGVIARVTAILGEEGISIENLRIL--EAREDIHGVLQISFKN 340 (359)
T ss_pred cceEEEEeCCCCCCHHHHHHHHHHHcCCCeecceee--eccCCcCceEEEEeCC
Confidence 446677777999999999999999999999997653 2223333455566553
No 128
>PRK03059 PII uridylyl-transferase; Provisional
Probab=90.33 E-value=1.7 Score=47.88 Aligned_cols=46 Identities=22% Similarity=0.256 Sum_probs=37.3
Q ss_pred CCCcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCe
Q 020794 37 SPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNV 83 (321)
Q Consensus 37 ~~~~~~~Iltv~G~Dr~GIVA~VS~~La~~G~NI~d~~q~~~~l~g~ 83 (321)
.+.....-|+|.++||||+-|.+++.|+.+|.||++.+-+.. .+|.
T Consensus 673 ~~~~~~~~v~i~~~d~~gLFa~i~g~l~~~~l~I~~A~i~t~-~~g~ 718 (856)
T PRK03059 673 SPAGEGLQVMVYTPDQPDLFARICGYFDRAGFSILDARVHTT-RHGY 718 (856)
T ss_pred cCCCCeEEEEEEecCCCcHHHHHHHHHHHCCCceeeeEEEEc-CCCe
Confidence 334445688999999999999999999999999999887643 2444
No 129
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=90.30 E-value=2.7 Score=30.31 Aligned_cols=35 Identities=17% Similarity=0.134 Sum_probs=30.7
Q ss_pred EEEEEEcC---CccchHHHHHHHHHhcCCeEeEeeeec
Q 020794 43 GIHVFHCP---DEVGIVAKLSECIASRGGNILAADVFV 77 (321)
Q Consensus 43 ~Iltv~G~---Dr~GIVA~VS~~La~~G~NI~d~~q~~ 77 (321)
.+++++|. +++|+.+++-+.|+++|+|+.-++|..
T Consensus 2 ~~isvvg~~~~~~~~~~~~if~~L~~~~I~v~~i~q~~ 39 (66)
T cd04919 2 AILSLVGKHMKNMIGIAGRMFTTLADHRINIEMISQGA 39 (66)
T ss_pred eEEEEECCCCCCCcCHHHHHHHHHHHCCCCEEEEEecC
Confidence 46788886 789999999999999999999998853
No 130
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=89.96 E-value=2.9 Score=29.89 Aligned_cols=60 Identities=8% Similarity=0.118 Sum_probs=41.8
Q ss_pred EEEEEEcC---CccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHHHHHh
Q 020794 43 GIHVFHCP---DEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMF 113 (321)
Q Consensus 43 ~Iltv~G~---Dr~GIVA~VS~~La~~G~NI~d~~q~~~~l~g~F~Mr~~v~~~~~~~~~~~L~~~L~~la~~l 113 (321)
.+++++|. +++|+.+++-+.|+++|+|+.-++|... + +.+.+-++ .+.+.+..+.+-++|
T Consensus 2 ~~isivg~~~~~~~~~~~~i~~~L~~~~I~v~~i~q~~s--~----~~isf~i~-----~~~~~~~~~~Lh~~~ 64 (66)
T cd04924 2 AVVAVVGSGMRGTPGVAGRVFGALGKAGINVIMISQGSS--E----YNISFVVA-----EDDGWAAVKAVHDEF 64 (66)
T ss_pred eEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecCc--c----ceEEEEEe-----HHHHHHHHHHHHHHh
Confidence 46788885 7899999999999999999999988642 2 33334443 244455555554544
No 131
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=89.73 E-value=3.6 Score=31.79 Aligned_cols=58 Identities=19% Similarity=0.189 Sum_probs=39.2
Q ss_pred cCCccchHHHHHHHHHhcCCeEeEeeeeccCCC-CeEEEEEEEEeCCCCCChHHHHHHHHHHHH
Q 020794 49 CPDEVGIVAKLSECIASRGGNILAADVFVPEKK-NVFYSRSEFIFDPIKWPREQMDEDFFKLSK 111 (321)
Q Consensus 49 G~Dr~GIVA~VS~~La~~G~NI~d~~q~~~~l~-g~F~Mr~~v~~~~~~~~~~~L~~~L~~la~ 111 (321)
-+|+||-.+++=+.++.+|+|+..+...-.... +.|.-.++++. ..+.++..++.+.+
T Consensus 7 l~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~id~e~-----~~~~i~~~l~~l~~ 65 (74)
T cd04929 7 LKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFVDCEC-----DQRRLDELVQLLKR 65 (74)
T ss_pred cCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEc-----CHHHHHHHHHHHHH
Confidence 389999999999999999999999887632222 22332333332 23467777776654
No 132
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional
Probab=89.49 E-value=3.1 Score=39.06 Aligned_cols=79 Identities=24% Similarity=0.354 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHhhhccceeeeCCCCCCeeEEEEEeCCc--hhHHHHHHhhhc-CCcCeeEEEEEeCCCCC--CCchHHH
Q 020794 101 QMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQE--HCLVDFLYGWQE-GKLPVEITCVISNHDRG--PNSHVIR 175 (321)
Q Consensus 101 ~L~~~L~~la~~lg~~~~~~r~~~~~~~~rIavl~S~~g--~~l~~lL~~~~~-~~l~~~i~~Vis~~~~~--~~~~v~~ 175 (321)
.+.+.+....++++| ..+..||+|..||+. .+|-.++..++. ...+.++.+|-.++.-. ....+.+
T Consensus 11 ~~~~~v~~~i~~~~l---------i~~~~kilVa~SGG~DS~~LL~ll~~l~~~~~~~~~l~av~vd~g~~~~~~~~~~~ 81 (258)
T PRK10696 11 RLRRQVGQAIADFNM---------IEEGDRVMVCLSGGKDSYTLLDILLNLQKRAPINFELVAVNLDQKQPGFPEHVLPE 81 (258)
T ss_pred HHHHHHHHHHHHcCC---------CCCCCEEEEEecCCHHHHHHHHHHHHHHHhCCCCeEEEEEEecCCCCCCCHHHHHH
Confidence 344555555555553 124458999999974 355556655432 23346888777665311 1234689
Q ss_pred HHHHcCCCEEEEc
Q 020794 176 FLERHGIPYHYLC 188 (321)
Q Consensus 176 ~a~~~gIP~~~~~ 188 (321)
+|+++|||++.+.
T Consensus 82 ~~~~lgI~~~v~~ 94 (258)
T PRK10696 82 YLESLGVPYHIEE 94 (258)
T ss_pred HHHHhCCCEEEEE
Confidence 9999999998764
No 133
>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=89.38 E-value=2 Score=33.13 Aligned_cols=33 Identities=12% Similarity=0.068 Sum_probs=28.4
Q ss_pred EEEE--E-cCCccchHHHHHHHHHhcCCeEeEeeee
Q 020794 44 IHVF--H-CPDEVGIVAKLSECIASRGGNILAADVF 76 (321)
Q Consensus 44 Iltv--~-G~Dr~GIVA~VS~~La~~G~NI~d~~q~ 76 (321)
.+++ . .++++|..++|-+.|+++|+||.-+.|.
T Consensus 3 ~ItI~~~~~~~~~g~~~~IF~~La~~~I~VDmI~~s 38 (75)
T cd04932 3 LVTLKSPNMLHAQGFLAKVFGILAKHNISVDLITTS 38 (75)
T ss_pred EEEEecCCCCCCcCHHHHHHHHHHHcCCcEEEEeec
Confidence 4666 3 4788999999999999999999999873
No 134
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=89.29 E-value=3.8 Score=40.40 Aligned_cols=29 Identities=17% Similarity=0.389 Sum_probs=23.3
Q ss_pred ccccCChhHHhhc-CCCeEEecCCCCCCCCCC
Q 020794 243 FNMILSGKFLRSY-GKDVINIHHGLLPSFKGG 273 (321)
Q Consensus 243 ~~~il~~~~l~~~-~~~~INiHpslLP~yrG~ 273 (321)
-+|.+..++++.. +..+|=+|| ||+++|.
T Consensus 252 ~~y~v~~ell~~a~k~~aivmH~--lP~~~~~ 281 (334)
T PRK01713 252 MPYQVTPELMKRTGNPKVKFMHC--LPAFHNS 281 (334)
T ss_pred cCCcCCHHHHhccCCCCCEEECC--CCCCCCc
Confidence 4568999999885 567899998 6898774
No 135
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=89.20 E-value=1.4 Score=34.38 Aligned_cols=31 Identities=23% Similarity=0.265 Sum_probs=26.4
Q ss_pred EEEEEcCCccchHHHHHHHHHhcCCeEeEeeee
Q 020794 44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVF 76 (321)
Q Consensus 44 Iltv~G~Dr~GIVA~VS~~La~~G~NI~d~~q~ 76 (321)
++.+.=|||||-.+++++.|+ ++||.+....
T Consensus 3 vl~v~ipD~PG~L~~ll~~l~--~anI~~~~y~ 33 (85)
T cd04906 3 LLAVTIPERPGSFKKFCELIG--PRNITEFNYR 33 (85)
T ss_pred EEEEecCCCCcHHHHHHHHhC--CCceeEEEEE
Confidence 567777999999999999999 7888887665
No 136
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=89.05 E-value=4.1 Score=30.00 Aligned_cols=61 Identities=15% Similarity=0.105 Sum_probs=42.6
Q ss_pred cEEEEEEcC--CccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHHHHHh
Q 020794 42 HGIHVFHCP--DEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMF 113 (321)
Q Consensus 42 ~~Iltv~G~--Dr~GIVA~VS~~La~~G~NI~d~~q~~~~l~g~F~Mr~~v~~~~~~~~~~~L~~~L~~la~~l 113 (321)
+.+++++|. ..+|+.+++-+.|+++|+||.-++|... +-.+ .+-+ +.+...+++..+-++|
T Consensus 1 ~a~VsvVG~~~~~~~~~~~i~~aL~~~~I~v~~i~~g~s--~~si----s~~v-----~~~~~~~av~~Lh~~f 63 (65)
T cd04918 1 RSIISLIGNVQRSSLILERAFHVLYTKGVNVQMISQGAS--KVNI----SLIV-----NDSEAEGCVQALHKSF 63 (65)
T ss_pred CcEEEEECCCCCCccHHHHHHHHHHHCCCCEEEEEecCc--cceE----EEEE-----eHHHHHHHHHHHHHHH
Confidence 357888887 4689999999999999999999988632 1122 2222 2355666777766655
No 137
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=88.84 E-value=4.5 Score=39.36 Aligned_cols=27 Identities=19% Similarity=-0.007 Sum_probs=22.4
Q ss_pred ccccCChhHHhhcCCCeEEecCCCCCCCCCC
Q 020794 243 FNMILSGKFLRSYGKDVINIHHGLLPSFKGG 273 (321)
Q Consensus 243 ~~~il~~~~l~~~~~~~INiHpslLP~yrG~ 273 (321)
-+|-+..++++..+.+++=+||.+ ||-
T Consensus 241 ~~y~v~~ell~~a~~~ai~mHclP----Rg~ 267 (301)
T TIGR00670 241 GSYGITLERLEAAKKGVIIMHPLP----RVD 267 (301)
T ss_pred cCCeECHHHHhhcCCCCEEECCCC----CCc
Confidence 356899999999888899999965 764
No 138
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=88.82 E-value=6.1 Score=43.55 Aligned_cols=103 Identities=3% Similarity=-0.040 Sum_probs=72.4
Q ss_pred CcccEEEEEEcC---CccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHHHHHhhh
Q 020794 39 TLTHGIHVFHCP---DEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNA 115 (321)
Q Consensus 39 ~~~~~Iltv~G~---Dr~GIVA~VS~~La~~G~NI~d~~q~~~~l~g~F~Mr~~v~~~~~~~~~~~L~~~L~~la~~lg~ 115 (321)
.....+|+++|. .++|+.+++-+.|.+.|+|++...+.- . ...+.+ +.+...+++..+-++|-
T Consensus 388 ~~~~a~VsvVG~gm~~~~gv~~~~f~aL~~~~I~ii~~~~s~-----~-sis~vV-------~~~d~~~av~~LH~~f~- 453 (810)
T PRK09466 388 REGLALVALVGAGVTRNPLHCHRFYQQLKDQPVEFIWQSEDG-----L-SLVAVL-------RQGPTESLIQGLHQSLF- 453 (810)
T ss_pred eCCeEEEEEeCCCcccCccHHHHHHHHHHhCCCcEEEEeCCC-----c-EEEEEE-------ehHHHHHHHHHHHHHHh-
Confidence 345678999995 589999999999999999998876631 1 222222 24667788888888872
Q ss_pred ccceeeeCCCCCCeeEEEEEeCC-chhHHHHHHhhh-----cCCcCeeEEEEEe
Q 020794 116 MRSVVRVPDIDPKYKVAVLASKQ-EHCLVDFLYGWQ-----EGKLPVEITCVIS 163 (321)
Q Consensus 116 ~~~~~r~~~~~~~~rIavl~S~~-g~~l~~lL~~~~-----~~~l~~~i~~Vis 163 (321)
...+..+|+++|-|+ |..+..+|...+ .-.++.+|++|..
T Consensus 454 --------~~~~~i~i~l~G~G~VG~~l~~~l~~~~~~l~~~~g~~~~v~~I~~ 499 (810)
T PRK09466 454 --------RAEKRIGLVLFGKGNIGSRWLELFAREQSTLSARTGFEFVLVGVVD 499 (810)
T ss_pred --------CcCceEEEEEEecCCChHHHHHHHHHHHHHHHHhcCCCEEEEEEEe
Confidence 123578999999887 677766665422 1234677888764
No 139
>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD
Probab=88.06 E-value=2.8 Score=31.87 Aligned_cols=33 Identities=18% Similarity=0.168 Sum_probs=28.1
Q ss_pred EEEEEEc---CCccchHHHHHHHHHhcCCeEeEeee
Q 020794 43 GIHVFHC---PDEVGIVAKLSECIASRGGNILAADV 75 (321)
Q Consensus 43 ~Iltv~G---~Dr~GIVA~VS~~La~~G~NI~d~~q 75 (321)
..+++.| ++.+|+++++-+.|+++|+|+.-+.+
T Consensus 2 ~~Vsi~g~~l~~~~g~~~~if~~L~~~~I~v~~i~~ 37 (75)
T cd04912 2 TLLNIKSNRMLGAHGFLAKVFEIFAKHGLSVDLIST 37 (75)
T ss_pred EEEEEEcCCCCCCccHHHHHHHHHHHcCCeEEEEEc
Confidence 3567754 67899999999999999999988876
No 140
>PRK08526 threonine dehydratase; Provisional
Probab=87.69 E-value=1.8 Score=43.53 Aligned_cols=40 Identities=15% Similarity=0.116 Sum_probs=34.7
Q ss_pred CCcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeec
Q 020794 38 PTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFV 77 (321)
Q Consensus 38 ~~~~~~Iltv~G~Dr~GIVA~VS~~La~~G~NI~d~~q~~ 77 (321)
.....+.+.+.=|||||-.+++++.+++.|.||+++++.-
T Consensus 322 ~~~r~~~~~~~~~d~pg~l~~~~~~~~~~~~~i~~~~~~r 361 (403)
T PRK08526 322 KSYRKMKLHVTLVDKPGALMGLTDILKEANANIVKIDYDR 361 (403)
T ss_pred hcCCEEEEEEEcCCCCCHHHHHHHHHccCCCcEEEEEEEe
Confidence 4556677888889999999999999999999999998853
No 141
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=87.69 E-value=7.6 Score=37.74 Aligned_cols=29 Identities=21% Similarity=0.430 Sum_probs=24.7
Q ss_pred cccccCChhHHhhcCCCeEEecCCCCCCCCC
Q 020794 242 YFNMILSGKFLRSYGKDVINIHHGLLPSFKG 272 (321)
Q Consensus 242 ~~~~il~~~~l~~~~~~~INiHpslLP~yrG 272 (321)
+-+|.+.+++++..+.+++=+|| ||+.||
T Consensus 241 ~~~y~l~~~~l~~~~~~~ivmHp--lP~~rg 269 (304)
T TIGR00658 241 FRPYQVNEELMELAKPEVIFMHC--LPAHRG 269 (304)
T ss_pred hcCCcCCHHHHhhcCCCCEEECC--CCCCCC
Confidence 34568999999999889999998 688887
No 142
>PRK02255 putrescine carbamoyltransferase; Provisional
Probab=87.29 E-value=4.2 Score=40.25 Aligned_cols=28 Identities=18% Similarity=0.422 Sum_probs=24.2
Q ss_pred cc-ccCChhHHhhcCCCeEEecCCCCCCCCC
Q 020794 243 FN-MILSGKFLRSYGKDVINIHHGLLPSFKG 272 (321)
Q Consensus 243 ~~-~il~~~~l~~~~~~~INiHpslLP~yrG 272 (321)
++ |.+..++++..+.+++=+|| ||.+||
T Consensus 249 ~~~y~v~~ell~~a~~~~ivmHp--LP~~Rg 277 (338)
T PRK02255 249 YPKYQVTPELMAKAGPHAKFMHC--LPATRG 277 (338)
T ss_pred CCCceECHHHHhccCCCCEEeCC--CCCcCC
Confidence 44 79999999999888999998 688887
No 143
>PRK04523 N-acetylornithine carbamoyltransferase; Reviewed
Probab=87.19 E-value=8.5 Score=38.03 Aligned_cols=60 Identities=12% Similarity=0.032 Sum_probs=36.3
Q ss_pred HHHhcCCCEEEEEeeccc--cchhhHhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeEEecCCCCCCCCCC
Q 020794 199 LELVQNTDFLVLARYMQP--VPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGG 273 (321)
Q Consensus 199 ~~~l~~~Dlivlag~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~l~~~~~~~INiHpslLP~yrG~ 273 (321)
.+.++++|++.+-+|..- .+ +.+.+. .....+.+|.+..++++..+ .++=+|| ||..||-
T Consensus 239 ~ea~~~aDvvy~~~w~~~~~~~-~~~~~~-----------~~~~~~~~y~v~~~ll~~a~-~~i~mHc--LP~~Rg~ 300 (335)
T PRK04523 239 DSAYAGADVVYAKSWGALPFFG-NWEPEK-----------PIRDQYQHFIVDERKMALTN-NGVFSHC--LPLRRNV 300 (335)
T ss_pred HHHhCCCCEEEeceeeccccCC-cccccH-----------HHHHhCcCCcCCHHHHhCCC-CCEEECC--CCCCCCC
Confidence 444558999998887530 00 000000 00123345699999998775 6888998 6788873
No 144
>PRK11899 prephenate dehydratase; Provisional
Probab=87.19 E-value=5.9 Score=38.23 Aligned_cols=64 Identities=8% Similarity=-0.069 Sum_probs=43.4
Q ss_pred EEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccC-CCCeEEEEEEEEeCCCCCChHHHHHHHHHHHH
Q 020794 43 GIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPE-KKNVFYSRSEFIFDPIKWPREQMDEDFFKLSK 111 (321)
Q Consensus 43 ~Iltv~G~Dr~GIVA~VS~~La~~G~NI~d~~q~~~~-l~g~F~Mr~~v~~~~~~~~~~~L~~~L~~la~ 111 (321)
.++++ +|+||..+++=+.++.+|+|++.+...-.. .-+.|.-.++++.. ..-+.++++|+++.+
T Consensus 197 l~~~~--~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~id~eg~---~~d~~v~~aL~~l~~ 261 (279)
T PRK11899 197 FVFRV--RNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYADIEGH---PEDRNVALALEELRF 261 (279)
T ss_pred EEEEe--CCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEEEEECC---CCCHHHHHHHHHHHH
Confidence 44444 899999999999999999999998876321 11333333444432 234667888887754
No 145
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=87.07 E-value=7.4 Score=37.85 Aligned_cols=29 Identities=21% Similarity=0.346 Sum_probs=23.8
Q ss_pred ccccCChhHHhhcCCCeEEecCCCCCCCCCC
Q 020794 243 FNMILSGKFLRSYGKDVINIHHGLLPSFKGG 273 (321)
Q Consensus 243 ~~~il~~~~l~~~~~~~INiHpslLP~yrG~ 273 (321)
-+|.+..++++..+.+++=+|| ||.+||-
T Consensus 243 ~~y~v~~~~l~~~~~~~ivmHp--lP~~R~~ 271 (304)
T PRK00779 243 APYQVNEELMALAKPDAIFMHC--LPAHRGE 271 (304)
T ss_pred cccCCCHHHHHhcCCCeEEecC--CCccCCC
Confidence 4568999999998888999996 6777773
No 146
>PRK13376 pyrB bifunctional aspartate carbamoyltransferase catalytic subunit/aspartate carbamoyltransferase regulatory subunit; Provisional
Probab=87.05 E-value=5.6 Score=41.76 Aligned_cols=29 Identities=24% Similarity=0.225 Sum_probs=25.3
Q ss_pred ccccCChhHHhhcCCCeEEecCCCCCCCCCC
Q 020794 243 FNMILSGKFLRSYGKDVINIHHGLLPSFKGG 273 (321)
Q Consensus 243 ~~~il~~~~l~~~~~~~INiHpslLP~yrG~ 273 (321)
.+|.+.+++++..+.+++=+|| ||++||.
T Consensus 271 ~~y~vt~elm~~ak~~ai~MHc--LPa~Rg~ 299 (525)
T PRK13376 271 KAVTFRKEFLDKLPEGVKFYHP--LPRHKVY 299 (525)
T ss_pred cCcEECHHHHhccCCCCEEECC--CCCCCCC
Confidence 4679999999998888999998 7999983
No 147
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=86.78 E-value=6.8 Score=27.95 Aligned_cols=35 Identities=20% Similarity=0.228 Sum_probs=30.5
Q ss_pred EEEEEEcC---CccchHHHHHHHHHhcCCeEeEeeeec
Q 020794 43 GIHVFHCP---DEVGIVAKLSECIASRGGNILAADVFV 77 (321)
Q Consensus 43 ~Iltv~G~---Dr~GIVA~VS~~La~~G~NI~d~~q~~ 77 (321)
.+++++|. +++|+.+++-+.|+++|+|+.-++|..
T Consensus 2 ~lisivg~~~~~~~~~~~~i~~~L~~~~i~v~~i~~~~ 39 (66)
T cd04916 2 ALIMVVGEGMKNTVGVSARATAALAKAGINIRMINQGS 39 (66)
T ss_pred eEEEEEcCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 36788885 789999999999999999999998854
No 148
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=86.50 E-value=5.9 Score=37.27 Aligned_cols=80 Identities=26% Similarity=0.294 Sum_probs=51.4
Q ss_pred eeEEEEEeCCchhHHHHHHhhhcCCcCeeEEEEEeCCCCCC--------Cc-hHHHHHHHcCCCEEEEcCCc-chhH-HH
Q 020794 129 YKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGP--------NS-HVIRFLERHGIPYHYLCAKE-NERE-EE 197 (321)
Q Consensus 129 ~rIavl~S~~g~~l~~lL~~~~~~~l~~~i~~Vis~~~~~~--------~~-~v~~~a~~~gIP~~~~~~~~-~~~~-~~ 197 (321)
||++.|.||..-...++..+++.| ++|.++++-++..+ |. .+...|+..|||+..+.... .+++ ++
T Consensus 1 mk~~aL~SGGKDS~~Al~~a~~~G---~eV~~Ll~~~p~~~dS~m~H~~n~~~~~~~Ae~~gi~l~~~~~~g~~e~eve~ 77 (223)
T COG2102 1 MKVIALYSGGKDSFYALYLALEEG---HEVVYLLTVKPENGDSYMFHTPNLELAELQAEAMGIPLVTFDTSGEEEREVEE 77 (223)
T ss_pred CcEEEEEecCcHHHHHHHHHHHcC---CeeEEEEEEecCCCCeeeeeccchHHHHHHHHhcCCceEEEecCccchhhHHH
Confidence 578888998764455666666666 67777666554332 22 23556788999998877433 2222 46
Q ss_pred HHHHhc--CCCEEEEE
Q 020794 198 LLELVQ--NTDFLVLA 211 (321)
Q Consensus 198 ~~~~l~--~~Dlivla 211 (321)
+.+.+. +.|.++..
T Consensus 78 L~~~l~~l~~d~iv~G 93 (223)
T COG2102 78 LKEALRRLKVDGIVAG 93 (223)
T ss_pred HHHHHHhCcccEEEEc
Confidence 666665 78888754
No 149
>PRK06349 homoserine dehydrogenase; Provisional
Probab=86.45 E-value=3.7 Score=41.59 Aligned_cols=68 Identities=10% Similarity=-0.061 Sum_probs=47.2
Q ss_pred CcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHHHH
Q 020794 39 TLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSK 111 (321)
Q Consensus 39 ~~~~~Iltv~G~Dr~GIVA~VS~~La~~G~NI~d~~q~~~~l~g~F~Mr~~v~~~~~~~~~~~L~~~L~~la~ 111 (321)
...++-|.+...|++|+.++|++.+.++|+||..+.|... ..+.--+.+..+. .+..++++.++++.+
T Consensus 345 ~~~~yylRl~v~d~pGvLa~I~~~f~~~~vsI~si~q~~~-~~~~~~ivivT~~----~~e~~l~~~i~~L~~ 412 (426)
T PRK06349 345 IESKYYLRLLVADKPGVLAKIAAIFAENGISIESILQKGA-GGEGAEIVIVTHE----TSEAALRAALAAIEA 412 (426)
T ss_pred hceeEEEEEEecCCcchHHHHHHHHhhcCccEEEEEeccC-CCCceeEEEEEEe----CCHHHHHHHHHHHhc
Confidence 4556889999999999999999999999999999988632 1122222233332 234666666666543
No 150
>PRK13814 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=85.65 E-value=3.8 Score=40.10 Aligned_cols=118 Identities=15% Similarity=0.114 Sum_probs=68.2
Q ss_pred chhHHHHHHh---h-hcCCcCeeEEEEEeCCC-CCCCchHHHHHHHcCC-CEEEEcCCcchhH----------HHHHHHh
Q 020794 139 EHCLVDFLYG---W-QEGKLPVEITCVISNHD-RGPNSHVIRFLERHGI-PYHYLCAKENERE----------EELLELV 202 (321)
Q Consensus 139 g~~l~~lL~~---~-~~~~l~~~i~~Vis~~~-~~~~~~v~~~a~~~gI-P~~~~~~~~~~~~----------~~~~~~l 202 (321)
.|..|+|+|. . ..|.+..--++.+.+-. ..........+...|+ -+..+..++-..+ .++.+.+
T Consensus 136 ~HPtQaLaDl~Ti~e~~g~l~g~~va~vGD~~~~rv~~Sl~~~~a~~g~~~v~~~~P~~~~p~~~~~~~~~~~~d~~ea~ 215 (310)
T PRK13814 136 QHPSQALIDLMTIKQHKPHWNKLCVTIIGDIRHSRVANSLMDGLVTMGVPEIRLVGPSSLLPDKVGNDSIKKFTELKPSL 215 (310)
T ss_pred CCchHHHHHHHHHHHHhCCcCCcEEEEECCCCCCcHHHHHHHHHHHcCCCEEEEeCCcccCcCccccceEEEEcCHHHHh
Confidence 4777777764 1 23555432333444421 1112355677888998 5766553321111 2344555
Q ss_pred cCCCEEEEEeeccccchhhHhhhhhhhhhhhcccCcccccc-cccCChhHHhhcCCCeEEecCCCCCCCCCC
Q 020794 203 QNTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYF-NMILSGKFLRSYGKDVINIHHGLLPSFKGG 273 (321)
Q Consensus 203 ~~~Dlivlag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~il~~~~l~~~~~~~INiHpslLP~yrG~ 273 (321)
+++|++.+-+|.+ |- .+.....-.|. +|.+..++++..+..++=+|| ||++||-
T Consensus 216 ~~aDvvy~~~~~~------er---------~~~~~~~~~~~~~y~v~~~~l~~a~~~~i~mHc--LP~~Rg~ 270 (310)
T PRK13814 216 LNSDVIVTLRLQK------ER---------HDNSVDIDAFRGSFRLTPEKLYSAKPDAIVMHP--GPVNREV 270 (310)
T ss_pred CCCCEEEECcccc------cc---------ccchhHHHHhCCCcccCHHHHHhcCCCCEEECC--CCCCCCC
Confidence 6899998877743 10 00111112234 379999999998888999998 7999873
No 151
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=85.30 E-value=1.9 Score=29.25 Aligned_cols=34 Identities=18% Similarity=0.071 Sum_probs=30.4
Q ss_pred EEEEEcCC---ccchHHHHHHHHHhcCCeEeEeeeec
Q 020794 44 IHVFHCPD---EVGIVAKLSECIASRGGNILAADVFV 77 (321)
Q Consensus 44 Iltv~G~D---r~GIVA~VS~~La~~G~NI~d~~q~~ 77 (321)
++++.|.+ .+|+.+++-+.|.++|+||.-+.+..
T Consensus 2 ~i~v~g~~~~~~~~~~~~i~~~l~~~~i~i~~i~~~~ 38 (60)
T cd04868 2 KVSIVGVGMRGTPGVAAKIFSALAEAGINVDMISQSE 38 (60)
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHCCCcEEEEEcCC
Confidence 57888887 89999999999999999999998864
No 152
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=84.57 E-value=9.9 Score=28.25 Aligned_cols=60 Identities=22% Similarity=0.286 Sum_probs=41.4
Q ss_pred EEEEEEcCC--ccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHHHHHh
Q 020794 43 GIHVFHCPD--EVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMF 113 (321)
Q Consensus 43 ~Iltv~G~D--r~GIVA~VS~~La~~G~NI~d~~q~~~~l~g~F~Mr~~v~~~~~~~~~~~L~~~L~~la~~l 113 (321)
.+++++|.. ++|+.+++.+.|++.|+|+.-++|... + - .+.+-++ .++..++++.+-++|
T Consensus 3 a~VsvVG~gm~~~gv~~ki~~~L~~~~I~v~~i~~~~s--~--~--~is~~V~-----~~~~~~av~~Lh~~f 64 (66)
T cd04915 3 AIVSVIGRDLSTPGVLARGLAALAEAGIEPIAAHQSMR--N--V--DVQFVVD-----RDDYDNAIKALHAAL 64 (66)
T ss_pred EEEEEECCCCCcchHHHHHHHHHHHCCCCEEEEEecCC--e--e--EEEEEEE-----HHHHHHHHHHHHHHH
Confidence 578888853 689999999999999999999988632 1 1 2222222 355666666665554
No 153
>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu
Probab=84.30 E-value=11 Score=26.41 Aligned_cols=33 Identities=24% Similarity=0.181 Sum_probs=28.1
Q ss_pred EEEEEc---CCccchHHHHHHHHHhcCCeEeEeeee
Q 020794 44 IHVFHC---PDEVGIVAKLSECIASRGGNILAADVF 76 (321)
Q Consensus 44 Iltv~G---~Dr~GIVA~VS~~La~~G~NI~d~~q~ 76 (321)
.+++.| ++.+|+.+++.+.|+++|+|+.-+++.
T Consensus 2 ~i~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i~~s 37 (63)
T cd04936 2 KVSIVGAGMRSHPGVAAKMFEALAEAGINIEMISTS 37 (63)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCcEEEEEcc
Confidence 477776 477999999999999999999888763
No 154
>PRK08192 aspartate carbamoyltransferase; Provisional
Probab=84.16 E-value=19 Score=35.67 Aligned_cols=27 Identities=15% Similarity=0.236 Sum_probs=20.7
Q ss_pred cccCChhHHh-hcCCCeEEecCCCCCCCCC
Q 020794 244 NMILSGKFLR-SYGKDVINIHHGLLPSFKG 272 (321)
Q Consensus 244 ~~il~~~~l~-~~~~~~INiHpslLP~yrG 272 (321)
+|.+..+++. ..+..++=+|| ||+++|
T Consensus 252 ~y~v~~e~l~~~a~~~ai~mHc--LP~~~~ 279 (338)
T PRK08192 252 KFRLNQSIYTQHCKSNTVIMHP--LPRDSR 279 (338)
T ss_pred ccccCHHHHHhhhCCCCEEECC--CCCCCC
Confidence 3689999994 46677899998 678753
No 155
>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=83.84 E-value=4 Score=28.07 Aligned_cols=28 Identities=32% Similarity=0.386 Sum_probs=25.8
Q ss_pred CCccchHHHHHHHHHhcCCeEeEeeeec
Q 020794 50 PDEVGIVAKLSECIASRGGNILAADVFV 77 (321)
Q Consensus 50 ~Dr~GIVA~VS~~La~~G~NI~d~~q~~ 77 (321)
+|.+|+.+++.+.|+++|+||.-++|..
T Consensus 9 ~~~~~~~~~i~~~L~~~~i~i~~i~~~~ 36 (61)
T cd04891 9 PDKPGVAAKIFSALAEAGINVDMIVQSV 36 (61)
T ss_pred CCCCcHHHHHHHHHHHcCCcEEEEEEcC
Confidence 7789999999999999999999998864
No 156
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=83.58 E-value=2.2 Score=42.26 Aligned_cols=52 Identities=13% Similarity=0.212 Sum_probs=33.9
Q ss_pred CCeeEEEEEeCCchhHHHHHHhhhcCCcCeeEEEEEeCCCCCCCchHHHHHHHcCCCEE
Q 020794 127 PKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYH 185 (321)
Q Consensus 127 ~~~rIavl~S~~g~~l~~lL~~~~~~~l~~~i~~Vis~~~~~~~~~v~~~a~~~gIP~~ 185 (321)
++.||+|+|++-|... +..+++-...+++++|++... ....++|+++|||++
T Consensus 2 ~~~rVgViG~~~G~~h---~~al~~~~~~~eLvaV~d~~~----erA~~~A~~~gi~~y 53 (343)
T TIGR01761 2 DVQSVVVCGTRFGQFY---LAAFAAAPERFELAGILAQGS----ERSRALAHRLGVPLY 53 (343)
T ss_pred CCcEEEEEeHHHHHHH---HHHHHhCCCCcEEEEEEcCCH----HHHHHHHHHhCCCcc
Confidence 4689999999655432 222222111379998887642 356889999999943
No 157
>PLN02527 aspartate carbamoyltransferase
Probab=82.84 E-value=11 Score=36.69 Aligned_cols=24 Identities=17% Similarity=0.128 Sum_probs=20.4
Q ss_pred ccccCChhHHhhcCCCeEEecCCC
Q 020794 243 FNMILSGKFLRSYGKDVINIHHGL 266 (321)
Q Consensus 243 ~~~il~~~~l~~~~~~~INiHpsl 266 (321)
-+|.+..++++..+.+++=+||.+
T Consensus 244 ~~y~v~~~ll~~a~~~~ivmHclP 267 (306)
T PLN02527 244 GKYIVDKKVMDVLPKHAVVMHPLP 267 (306)
T ss_pred CCceECHHHHhccCCCCEEECCCC
Confidence 347999999999888899999965
No 158
>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=82.45 E-value=14 Score=25.77 Aligned_cols=33 Identities=21% Similarity=0.157 Sum_probs=28.3
Q ss_pred EEEEEc---CCccchHHHHHHHHHhcCCeEeEeeee
Q 020794 44 IHVFHC---PDEVGIVAKLSECIASRGGNILAADVF 76 (321)
Q Consensus 44 Iltv~G---~Dr~GIVA~VS~~La~~G~NI~d~~q~ 76 (321)
.+++.| ++.+|+.+++.+.|+++|+|+.-+++.
T Consensus 2 ~v~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i~~s 37 (63)
T cd04923 2 KVSIVGAGMRSHPGVAAKMFKALAEAGINIEMISTS 37 (63)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEcc
Confidence 477877 467999999999999999999988763
No 159
>PRK14805 ornithine carbamoyltransferase; Provisional
Probab=82.28 E-value=8.3 Score=37.53 Aligned_cols=56 Identities=9% Similarity=0.214 Sum_probs=34.9
Q ss_pred hcCCCEEEEEeeccccchhhHhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeEEecCCCCCCCCCC
Q 020794 202 VQNTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGG 273 (321)
Q Consensus 202 l~~~Dlivlag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~l~~~~~~~INiHpslLP~yrG~ 273 (321)
++++|+|.+-.|.+. + .++. + ......+.+|.+..++++..+.. +=+|| ||.+||-
T Consensus 212 ~~~aDvvy~~~w~~~-~--~~~~--~--------~~~~~~~~~y~vt~~~l~~a~~~-~vmH~--lP~~Rg~ 267 (302)
T PRK14805 212 IEGHDAIYTDTWISM-G--DDTP--L--------AEIKAKFAPYQVNKALMEKAGAT-FVMHC--QPAHRGV 267 (302)
T ss_pred HCCCCEEEeeceEeC-C--Cccc--c--------HHHHHhccCCcCCHHHHhcCCCC-eEECC--CCCCCCC
Confidence 458899988666541 0 0000 0 00122344569999999987766 88998 6888874
No 160
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=82.21 E-value=12 Score=37.00 Aligned_cols=30 Identities=20% Similarity=0.323 Sum_probs=23.9
Q ss_pred cccccCChhHHhhc-CCCeEEecCCCCCCCCCC
Q 020794 242 YFNMILSGKFLRSY-GKDVINIHHGLLPSFKGG 273 (321)
Q Consensus 242 ~~~~il~~~~l~~~-~~~~INiHpslLP~yrG~ 273 (321)
..+|.+..++++.. +.+++=+|| ||+++|.
T Consensus 251 ~~~y~v~~~lm~~a~k~~~ivmHc--LP~~~~~ 281 (336)
T PRK03515 251 LRPYQVNSKMMQLTGNPQVKFLHC--LPAFHDD 281 (336)
T ss_pred ccCCccCHHHHhcccCCCCEEECC--CCCCCCc
Confidence 44779999999984 567999998 6888774
No 161
>PRK06291 aspartate kinase; Provisional
Probab=81.46 E-value=29 Score=35.50 Aligned_cols=84 Identities=17% Similarity=0.168 Sum_probs=51.5
Q ss_pred cEEEEEEcC---CccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHHHHHhhhccc
Q 020794 42 HGIHVFHCP---DEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRS 118 (321)
Q Consensus 42 ~~Iltv~G~---Dr~GIVA~VS~~La~~G~NI~d~~q~~~~l~g~F~Mr~~v~~~~~~~~~~~L~~~L~~la~~lg~~~~ 118 (321)
..++++.|. +.+|+.+++.+.|+++|+||.-++|... + +.+.+-++. +.+.+.++.+.+++....
T Consensus 321 valIsI~g~~m~~~~g~~arvf~~L~~~gI~V~mIsq~ss--e----~sIsf~V~~-----~d~~~av~~L~~~~~~~~- 388 (465)
T PRK06291 321 VALINISGAGMVGVPGTAARIFSALAEEGVNVIMISQGSS--E----SNISLVVDE-----ADLEKALKALRREFGEGL- 388 (465)
T ss_pred EEEEEEeCCCCCCCccHHHHHHHHHHHCCCcEEEEEecCC--C----ceEEEEEeH-----HHHHHHHHHHHHHHHHhc-
Confidence 357899886 6899999999999999999999988632 2 122333332 334445555555443100
Q ss_pred eeeeCCCCCCeeEEEEEeC
Q 020794 119 VVRVPDIDPKYKVAVLASK 137 (321)
Q Consensus 119 ~~r~~~~~~~~rIavl~S~ 137 (321)
...+...+..-+|.+.+.+
T Consensus 389 ~~~i~~~~~~a~IsvvG~g 407 (465)
T PRK06291 389 VRDVTFDKDVCVVAVVGAG 407 (465)
T ss_pred CcceEEeCCEEEEEEEcCC
Confidence 0112233455677777665
No 162
>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat
Probab=81.09 E-value=18 Score=27.06 Aligned_cols=34 Identities=18% Similarity=0.219 Sum_probs=29.6
Q ss_pred EEEEEEcC---CccchHHHHHHHHHhcCCeEeEeeee
Q 020794 43 GIHVFHCP---DEVGIVAKLSECIASRGGNILAADVF 76 (321)
Q Consensus 43 ~Iltv~G~---Dr~GIVA~VS~~La~~G~NI~d~~q~ 76 (321)
.+++++|. +.+|+.+++-+.|+++|+|+.-++|.
T Consensus 2 ~~I~vvg~~~~~~~~~~~~i~~~L~~~~I~v~~i~~~ 38 (80)
T cd04921 2 ALINIEGTGMVGVPGIAARIFSALARAGINVILISQA 38 (80)
T ss_pred EEEEEEcCCCCCCccHHHHHHHHHHHCCCcEEEEEec
Confidence 46788664 78899999999999999999999886
No 163
>TIGR00289 conserved hypothetical protein TIGR00289. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs found by this model above the trusted cutoff, the much longer protein YLR143W from Saccharomyces cerevisiae, and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group.
Probab=80.98 E-value=14 Score=34.50 Aligned_cols=79 Identities=22% Similarity=0.272 Sum_probs=47.1
Q ss_pred eeEEEEEeCCchhHHHHHHhhhcCCcCeeEEEEEeCCCCCC--------C-chHHHHHHHcCCCEEEEcCCc--chhHHH
Q 020794 129 YKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGP--------N-SHVIRFLERHGIPYHYLCAKE--NEREEE 197 (321)
Q Consensus 129 ~rIavl~S~~g~~l~~lL~~~~~~~l~~~i~~Vis~~~~~~--------~-~~v~~~a~~~gIP~~~~~~~~--~~~~~~ 197 (321)
||++++-||.--+..+++...++ ++|+++++..+... + .-+...|+..|||++.+.... ....++
T Consensus 1 Mkv~vl~SGGKDS~lAl~~~~~~----~~V~~L~~~~~~~~~s~~~h~~~~~~~~~qA~algiPl~~~~~~~~~e~~~~~ 76 (222)
T TIGR00289 1 MKVAVLYSGGKDSILALYKALEE----HEVISLVGVFSENEESYMFHSPNLHLTDLVAEAVGIPLIKLYTSGEEEKEVED 76 (222)
T ss_pred CeEEEEecCcHHHHHHHHHHHHc----CeeEEEEEEcCCCCCccccccCCHHHHHHHHHHcCCCeEEEEcCCchhHHHHH
Confidence 58999999986444445444432 47777776654321 1 245678899999987665321 111245
Q ss_pred HHHHhc--CCCEEEEE
Q 020794 198 LLELVQ--NTDFLVLA 211 (321)
Q Consensus 198 ~~~~l~--~~Dlivla 211 (321)
+.+.++ ++|-+|..
T Consensus 77 l~~~l~~~gv~~vv~G 92 (222)
T TIGR00289 77 LAGQLGELDVEALCIG 92 (222)
T ss_pred HHHHHHHcCCCEEEEC
Confidence 555554 67777643
No 164
>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=80.91 E-value=5.2 Score=30.73 Aligned_cols=27 Identities=15% Similarity=0.154 Sum_probs=25.0
Q ss_pred cCCccchHHHHHHHHHhcCCeEeEeee
Q 020794 49 CPDEVGIVAKLSECIASRGGNILAADV 75 (321)
Q Consensus 49 G~Dr~GIVA~VS~~La~~G~NI~d~~q 75 (321)
.++.+|..++|-+.|+++|+|+.-+.|
T Consensus 11 ~~~~~g~~~~IF~~La~~~I~vDmI~~ 37 (75)
T cd04935 11 MWQQVGFLADVFAPFKKHGVSVDLVST 37 (75)
T ss_pred CCCccCHHHHHHHHHHHcCCcEEEEEe
Confidence 468899999999999999999999987
No 165
>PF01902 ATP_bind_4: ATP-binding region; InterPro: IPR002761 This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N-terminal. The structure of Q8U2K6 from SWISSPROT from Pyrococcus furiosus has been resolved to 2.7A and is suggested to be a putative N-type pytophosphatase. In some members of the family e.g. Q12429 from SWISSPROT, this domain is associated with IPR006175 from INTERPRO, another domain of unknown function. Proteins with this uncharacterised domain include two apparent ortholog families in the archaea, one of which is universal among the first four completed archaeal genomes. The domain comprises the full length of the archaeal proteins and the first third of fungal proteins.; PDB: 3RK0_A 3RK1_A 3RJZ_A 2D13_D.
Probab=80.78 E-value=7.4 Score=36.21 Aligned_cols=78 Identities=19% Similarity=0.282 Sum_probs=41.4
Q ss_pred eeEEEEEeCCchhHHHHHHhhhcCCcCeeEEEEEeCCCCCCC---------chHHHHHHHcCCCEEEEcCC--cchhHHH
Q 020794 129 YKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPN---------SHVIRFLERHGIPYHYLCAK--ENEREEE 197 (321)
Q Consensus 129 ~rIavl~S~~g~~l~~lL~~~~~~~l~~~i~~Vis~~~~~~~---------~~v~~~a~~~gIP~~~~~~~--~~~~~~~ 197 (321)
||++++-||..-+.-++..+.++ ++|.+.+|-.+...+ .-+...|+..|||...+..+ ...-.++
T Consensus 1 Mk~v~l~SGGKDS~lAl~~a~~~----~~v~~L~t~~~~~~~s~~~H~~~~~~~~~qA~algipl~~~~~~g~~~~~~~~ 76 (218)
T PF01902_consen 1 MKVVALWSGGKDSCLALYRALRQ----HEVVCLLTMVPEEEDSYMFHGVNIELIEAQAEALGIPLIEIPTSGDEEDYVED 76 (218)
T ss_dssp -EEEEE--SSHHHHHHHHHHHHT-----EEEEEEEEEESTTT-SSS-STTGTCHHHHHHHHT--EEEEEE---CCCHHHH
T ss_pred CcEEEEEcCcHHHHHHHHHHHHh----CCccEEEEeccCCCCcccccccCHHHHHHHHHHCCCCEEEEEccCccchhhHH
Confidence 68999999986444455555443 567666554322211 24577889999999877643 1122356
Q ss_pred HHHHhc--CCCEEEE
Q 020794 198 LLELVQ--NTDFLVL 210 (321)
Q Consensus 198 ~~~~l~--~~Dlivl 210 (321)
+.+.++ ++|-+|.
T Consensus 77 l~~~l~~~~v~~vv~ 91 (218)
T PF01902_consen 77 LKEALKELKVEAVVF 91 (218)
T ss_dssp HHHHHCTC--SEEE-
T ss_pred HHHHHHHcCCCEEEE
Confidence 777776 6777764
No 166
>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional
Probab=80.32 E-value=12 Score=37.69 Aligned_cols=68 Identities=6% Similarity=-0.053 Sum_probs=44.6
Q ss_pred cccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccC-CCCeEEEEEEEEeCCCCCChHHHHHHHHHHHHH
Q 020794 40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPE-KKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKM 112 (321)
Q Consensus 40 ~~~~Iltv~G~Dr~GIVA~VS~~La~~G~NI~d~~q~~~~-l~g~F~Mr~~v~~~~~~~~~~~L~~~L~~la~~ 112 (321)
....++++ +|+||-.+.+=+.++.+|+|++.+...-.. .-+.|.-.++++.. ..-..++++|+.+.+.
T Consensus 297 ktsl~~~~--~~~pGaL~~~L~~Fa~~giNLtkIeSRP~~~~~~~Y~Ffid~eg~---~~d~~~~~aL~~l~~~ 365 (386)
T PRK10622 297 KTTLLMAT--GQQAGALVEALLVLRNHNLIMTKLESRPIHGNPWEEMFYLDVQAN---LRSAEMQKALKELGEI 365 (386)
T ss_pred cEEEEEEc--CCCCcHHHHHHHHHHHcCCCeeEEEeeecCCCCceEEEEEEEeCC---CCCHHHHHHHHHHHHh
Confidence 33445555 799999999999999999999998876221 12333333444432 2335678888877553
No 167
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=79.76 E-value=7 Score=39.35 Aligned_cols=41 Identities=7% Similarity=0.071 Sum_probs=34.6
Q ss_pred CCCCcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeee
Q 020794 36 VSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVF 76 (321)
Q Consensus 36 ~~~~~~~~Iltv~G~Dr~GIVA~VS~~La~~G~NI~d~~q~ 76 (321)
-......+.+.+.=|||||-.+++.+.+...+.||.+.+..
T Consensus 319 l~~~~r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~y~ 359 (409)
T TIGR02079 319 LLYEGLKHYFIVRFPQRPGALREFLNDVLGPNDDITRFEYT 359 (409)
T ss_pred HHhcCCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEee
Confidence 34456677888888999999999999888888899998876
No 168
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=79.60 E-value=17 Score=32.97 Aligned_cols=55 Identities=22% Similarity=0.288 Sum_probs=35.1
Q ss_pred eEEEEEeCCc-hhHHHHHHhhhcCCcCeeEEEEEeCCCCCCC---------chHHHHHHHcCCCEEEEc
Q 020794 130 KVAVLASKQE-HCLVDFLYGWQEGKLPVEITCVISNHDRGPN---------SHVIRFLERHGIPYHYLC 188 (321)
Q Consensus 130 rIavl~S~~g-~~l~~lL~~~~~~~l~~~i~~Vis~~~~~~~---------~~v~~~a~~~gIP~~~~~ 188 (321)
|++++.||.- |++. +....+.| .+|.++++..+.... ..+.+.|+..|||...++
T Consensus 1 kv~v~~SGGkDS~~a-l~~a~~~G---~~v~~l~~~~~~~~~~~~~h~~~~e~~~~~A~~lgipl~~i~ 65 (194)
T cd01994 1 KVVALISGGKDSCYA-LYRALEEG---HEVVALLNLTPEEGSSMMYHTVNHELLELQAEAMGIPLIRIE 65 (194)
T ss_pred CEEEEecCCHHHHHH-HHHHHHcC---CEEEEEEEEecCCCCcccccccCHHHHHHHHHHcCCcEEEEe
Confidence 6788889874 5443 33333344 577777766432211 245788999999998876
No 169
>cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=79.50 E-value=9.1 Score=29.95 Aligned_cols=27 Identities=15% Similarity=0.161 Sum_probs=25.2
Q ss_pred cCCccchHHHHHHHHHhcCCeEeEeee
Q 020794 49 CPDEVGIVAKLSECIASRGGNILAADV 75 (321)
Q Consensus 49 G~Dr~GIVA~VS~~La~~G~NI~d~~q 75 (321)
.++.+|..++|-+.|+++|+||.-+.|
T Consensus 11 ~~~~~g~~a~IF~~La~~~InVDmI~q 37 (78)
T cd04933 11 MLGQYGFLAKVFSIFETLGISVDVVAT 37 (78)
T ss_pred CCCccCHHHHHHHHHHHcCCcEEEEEe
Confidence 478899999999999999999999987
No 170
>TIGR03316 ygeW probable carbamoyltransferase YgeW. Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism.
Probab=79.42 E-value=39 Score=33.78 Aligned_cols=87 Identities=13% Similarity=0.127 Sum_probs=49.2
Q ss_pred HHHHcCCCEEEEcCCcchhHHHHHHHhcCCCEEEEEeecccc----chhh---HhhhhhhhhhhhcccCcccccccccCC
Q 020794 176 FLERHGIPYHYLCAKENEREEELLELVQNTDFLVLARYMQPV----PLQK---EAYLGYKLLESLSSKGSLTSYFNMILS 248 (321)
Q Consensus 176 ~a~~~gIP~~~~~~~~~~~~~~~~~~l~~~Dlivlag~~~~~----~~~~---~~~~~~~~~~~~~~~~~~~~~~~~il~ 248 (321)
+|+++|..+.... ++.+.++++|++.+-.|...- ..++ +.+.+++..+.+.. ...-.+.+|.+.
T Consensus 225 ~~~~~g~~~~~~~--------d~~ea~~~aDvvyt~~w~s~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~y~vt 295 (357)
T TIGR03316 225 NAAENGGKFNIVN--------SMDEAFKDADIVYPKSWAPIAAMEKRTELYTGSDTEGAELLEQELL-SQNKKHKDWVCT 295 (357)
T ss_pred HHHHcCCeEEEEc--------CHHHHhCCCCEEEECCeeccccccccchhcccchhhhhhhhhccch-hHHHHhcCCeEC
Confidence 4556776655432 234455689999888775310 0000 01112222211111 112235678999
Q ss_pred hhHHhhcC-CCeEEecCCCCCCC-CCC
Q 020794 249 GKFLRSYG-KDVINIHHGLLPSF-KGG 273 (321)
Q Consensus 249 ~~~l~~~~-~~~INiHpslLP~y-rG~ 273 (321)
.++++..+ ..++=+|| ||++ ||-
T Consensus 296 ~e~l~~a~~~~~i~MHc--LP~~~Rg~ 320 (357)
T TIGR03316 296 EERMALTHDGEALYMHC--LPADIRGV 320 (357)
T ss_pred HHHHHhcCCCCcEEECC--CCCCccCc
Confidence 99999987 67999998 7887 874
No 171
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=79.34 E-value=4.6 Score=32.36 Aligned_cols=68 Identities=22% Similarity=0.297 Sum_probs=41.9
Q ss_pred eeEEEEEeCCch--hHHHHHHhhhcCCcCeeEEEEEeCCCCCCCchHHHHHHHcCCCEEEEcCCcchhHHHHHHHhc--C
Q 020794 129 YKVAVLASKQEH--CLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ--N 204 (321)
Q Consensus 129 ~rIavl~S~~g~--~l~~lL~~~~~~~l~~~i~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~~~~~l~--~ 204 (321)
+||+++|.|... -+.+++.. ....++++|+... .....++++++|+|.+ .. +.+++. +
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~----~~~~~v~~v~d~~----~~~~~~~~~~~~~~~~--~~--------~~~ll~~~~ 62 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRS----SPDFEVVAVCDPD----PERAEAFAEKYGIPVY--TD--------LEELLADED 62 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHT----TTTEEEEEEECSS----HHHHHHHHHHTTSEEE--SS--------HHHHHHHTT
T ss_pred CEEEEECCcHHHHHHHHHHHhc----CCCcEEEEEEeCC----HHHHHHHHHHhcccch--hH--------HHHHHHhhc
Confidence 589999987642 23333332 2247888887654 2356677899999933 21 233333 7
Q ss_pred CCEEEEEeec
Q 020794 205 TDFLVLARYM 214 (321)
Q Consensus 205 ~Dlivlag~~ 214 (321)
+|+++++.-.
T Consensus 63 ~D~V~I~tp~ 72 (120)
T PF01408_consen 63 VDAVIIATPP 72 (120)
T ss_dssp ESEEEEESSG
T ss_pred CCEEEEecCC
Confidence 9999887554
No 172
>PRK08639 threonine dehydratase; Validated
Probab=79.33 E-value=7.3 Score=39.30 Aligned_cols=42 Identities=10% Similarity=0.141 Sum_probs=34.7
Q ss_pred CCCCCcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeee
Q 020794 35 SVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVF 76 (321)
Q Consensus 35 ~~~~~~~~~Iltv~G~Dr~GIVA~VS~~La~~G~NI~d~~q~ 76 (321)
+.......+.+++.=|||||-.+++.+.+.+.+.||++++..
T Consensus 329 ~l~~~~r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~~~ 370 (420)
T PRK08639 329 SLIYEGLKHYFIVNFPQRPGALREFLDDVLGPNDDITRFEYL 370 (420)
T ss_pred HHHhcCCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEEe
Confidence 334466677888888999999999999888888899999765
No 173
>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]
Probab=79.19 E-value=14 Score=35.91 Aligned_cols=70 Identities=17% Similarity=0.112 Sum_probs=46.1
Q ss_pred CCCcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeecc-CCCCeEEEEEEEEeCCCCCChHHHHHHHHHHHH
Q 020794 37 SPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVP-EKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSK 111 (321)
Q Consensus 37 ~~~~~~~Iltv~G~Dr~GIVA~VS~~La~~G~NI~d~~q~~~-~l~g~F~Mr~~v~~~~~~~~~~~L~~~L~~la~ 111 (321)
.+..+..++++ +|+||-..++=..++.+|+|...+...-. ..-|.|...++++.. .+-..++++|+++.+
T Consensus 191 ~~~kTsl~f~~--~n~PGaL~~~L~~Fa~~gINlTkIESRP~k~~~~~Y~F~iD~eg~---~~~~~v~~AL~el~~ 261 (279)
T COG0077 191 GPEKTSLIFSV--PNKPGALYKALGVFAKRGINLTKIESRPLKTGLGEYLFFIDIEGH---IDDPLVKEALEELKE 261 (279)
T ss_pred CCceEEEEEEc--CCCCchHHHHHHHHHHcCcceeeEeecccCCCCeeEEEEEEEecC---cCcHhHHHHHHHHHh
Confidence 33455555555 59999999999999999999988766521 112233334444432 234778888887764
No 174
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=79.07 E-value=64 Score=33.37 Aligned_cols=137 Identities=15% Similarity=0.123 Sum_probs=75.5
Q ss_pred eeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHHHHHhhhccc---eeeeCCCCCCeeEEEEEeCCchhHHHHHHhh
Q 020794 73 ADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRS---VVRVPDIDPKYKVAVLASKQEHCLVDFLYGW 149 (321)
Q Consensus 73 ~~q~~~~l~g~F~Mr~~v~~~~~~~~~~~L~~~L~~la~~lg~~~~---~~r~~~~~~~~rIavl~S~~g~~l~~lL~~~ 149 (321)
++-+ +..|.|..++. ++. +.+...|...|+++-+++-.+-. ..+.+-...++||+|+.|.+|..++|++...
T Consensus 82 is~Y--~~rG~YQi~~~-~~~--p~G~G~L~~~~E~lK~kL~aEGlFd~~~KkpLP~~p~~IGVITS~tgAairDIl~~~ 156 (440)
T COG1570 82 ISLY--EPRGDYQIVAE-SME--PAGLGALYLAFEQLKAKLAAEGLFDPERKKPLPFFPKKIGVITSPTGAALRDILHTL 156 (440)
T ss_pred EEEE--cCCCceEEEEe-cCC--cCChhHHHHHHHHHHHHHHhCCCcChhhcCCCCCCCCeEEEEcCCchHHHHHHHHHH
Confidence 5555 44777875544 333 23677888888887666543211 1223334457899999999999999999876
Q ss_pred hcCCcCeeEEEEEeCCCCCCCc-----hHHHHHHHcC-CCEEEEcCCcch-------hHHHHHHHhcCCCEEEEEeecc
Q 020794 150 QEGKLPVEITCVISNHDRGPNS-----HVIRFLERHG-IPYHYLCAKENE-------REEELLELVQNTDFLVLARYMQ 215 (321)
Q Consensus 150 ~~~~l~~~i~~Vis~~~~~~~~-----~v~~~a~~~g-IP~~~~~~~~~~-------~~~~~~~~l~~~Dlivlag~~~ 215 (321)
+.-....+|. |+...-.+.++ ..++.|-+.+ +-+..+..-+.+ ++|.+.+.+.+...=|+.+-+|
T Consensus 157 ~rR~P~~~vi-v~pt~VQG~~A~~eIv~aI~~an~~~~~DvlIVaRGGGSiEDLW~FNdE~vaRAi~~s~iPvISAVGH 234 (440)
T COG1570 157 SRRFPSVEVI-VYPTLVQGEGAAEEIVEAIERANQRGDVDVLIVARGGGSIEDLWAFNDEIVARAIAASRIPVISAVGH 234 (440)
T ss_pred HhhCCCCeEE-EEeccccCCCcHHHHHHHHHHhhccCCCCEEEEecCcchHHHHhccChHHHHHHHHhCCCCeEeeccc
Confidence 5443224544 32222222222 2345555544 666666543211 3455555554444434444554
No 175
>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]
Probab=78.90 E-value=15 Score=29.44 Aligned_cols=67 Identities=9% Similarity=-0.011 Sum_probs=55.7
Q ss_pred cccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHH
Q 020794 40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKL 109 (321)
Q Consensus 40 ~~~~Iltv~G~Dr~GIVA~VS~~La~~G~NI~d~~q~~~~l~g~F~Mr~~v~~~~~~~~~~~L~~~L~~l 109 (321)
+|.|-+++...++||.+..|=......|..+-.++++....+|.-..-+.++.+. +.+.|...|+++
T Consensus 1 m~qyqldl~ar~~pe~leRVLrvtrhRGF~vcamnmt~~~da~~~nie~tV~s~R---~~~lL~~QLeKl 67 (86)
T COG3978 1 MMQYQLDLSARFNPETLERVLRVTRHRGFRVCAMNMTAAVDAGNANIELTVDSDR---SVDLLTSQLEKL 67 (86)
T ss_pred CceEEEeeeccCChHHHHHHHHHhhhcCeEEEEeecccccccccceEEEEEcCCC---ChHHHHHHHHHH
Confidence 4778999999999999999999999999999999888655577777667776553 688888888865
No 176
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=78.85 E-value=3.4 Score=45.40 Aligned_cols=46 Identities=20% Similarity=0.273 Sum_probs=37.4
Q ss_pred cccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeec--cCCCCeEE
Q 020794 40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFV--PEKKNVFY 85 (321)
Q Consensus 40 ~~~~Iltv~G~Dr~GIVA~VS~~La~~G~NI~d~~q~~--~~l~g~F~ 85 (321)
..+.++-|.|.||||..|+|++.++++|.+|....-+. ....+.|.
T Consensus 789 ~~~t~lEv~alDRpGLLa~v~~v~~dl~l~i~~AkItT~GErveD~F~ 836 (867)
T COG2844 789 NDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITTFGERVEDVFI 836 (867)
T ss_pred CCceEEEEEeCCcccHHHHHHHHHHhcccceeeeeeccccccceeEEE
Confidence 35789999999999999999999999999999865553 33344555
No 177
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain. Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein.
Probab=78.71 E-value=15 Score=34.43 Aligned_cols=78 Identities=22% Similarity=0.268 Sum_probs=47.0
Q ss_pred eeEEEEEeCCchhHHHHHHhhhcCCcCeeEEEEEeCCCCCC--------C-chHHHHHHHcCCCEEEEcCC-cc-hhHHH
Q 020794 129 YKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGP--------N-SHVIRFLERHGIPYHYLCAK-EN-EREEE 197 (321)
Q Consensus 129 ~rIavl~S~~g~~l~~lL~~~~~~~l~~~i~~Vis~~~~~~--------~-~~v~~~a~~~gIP~~~~~~~-~~-~~~~~ 197 (321)
||++++-||.--+..+++.+.++ ++|+++++-.+... + .-+...|+..|||...+... .. ...++
T Consensus 1 Mk~~~l~SGGKDS~~al~~a~~~----~~v~~L~t~~~~~~~s~~~H~~~~~~~~~qA~algipl~~~~~~~~~e~~~e~ 76 (223)
T TIGR00290 1 MKVAALISGGKDSCLALYHALKE----HEVISLVNIMPENEESYMFHGVNAHLTDLQAESIGIPLIKLYTEGTEEDEVEE 76 (223)
T ss_pred CcEEEEecCcHHHHHHHHHHHHh----CeeEEEEEEecCCCCcccccccCHHHHHHHHHHcCCCeEEeecCCCccHHHHH
Confidence 57888889886555666665544 46776665543321 1 23457789999998765421 11 12245
Q ss_pred HHHHhc--CCCEEEE
Q 020794 198 LLELVQ--NTDFLVL 210 (321)
Q Consensus 198 ~~~~l~--~~Dlivl 210 (321)
+.+.++ ++|.+|.
T Consensus 77 l~~~l~~~gv~~vv~ 91 (223)
T TIGR00290 77 LKGILHTLDVEAVVF 91 (223)
T ss_pred HHHHHHHcCCCEEEE
Confidence 666664 6777764
No 178
>PRK06635 aspartate kinase; Reviewed
Probab=78.15 E-value=11 Score=37.41 Aligned_cols=35 Identities=23% Similarity=0.193 Sum_probs=31.1
Q ss_pred ccEEEEEEc---CCccchHHHHHHHHHhcCCeEeEeee
Q 020794 41 THGIHVFHC---PDEVGIVAKLSECIASRGGNILAADV 75 (321)
Q Consensus 41 ~~~Iltv~G---~Dr~GIVA~VS~~La~~G~NI~d~~q 75 (321)
...+++++| +|++|+.+++.+.|+++|+||.-+++
T Consensus 339 ~ia~isvvG~~~~~~~g~~a~i~~~La~~~Ini~~i~s 376 (404)
T PRK06635 339 DIAKVSVVGVGMRSHPGVAAKMFEALAEEGINIQMIST 376 (404)
T ss_pred CeEEEEEECCCCCCCchHHHHHHHHHHHCCCCEEEEEe
Confidence 456799988 69999999999999999999998865
No 179
>COG2061 ACT-domain-containing protein, predicted allosteric regulator of homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=78.09 E-value=52 Score=29.60 Aligned_cols=114 Identities=13% Similarity=0.031 Sum_probs=70.0
Q ss_pred CcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCC-CCeEEEEEEEEeCCCCCChHHHHHHHHHHHHHhhhcc
Q 020794 39 TLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEK-KNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMR 117 (321)
Q Consensus 39 ~~~~~Iltv~G~Dr~GIVA~VS~~La~~G~NI~d~~q~~~~l-~g~F~Mr~~v~~~~~~~~~~~L~~~L~~la~~lg~~~ 117 (321)
+.|++-+.+-=+|+||-.-+|=+=|.+.|+||+.+-..-+.. .+.-.-.+.++.+. -+..++-++.+ ++.|+-
T Consensus 2 ~~mritldIEL~D~PGQLl~vLqPls~~g~NiItIiH~r~kk~g~r~pV~i~~~~d~----~~~~~~i~~~~-e~~Gi~- 75 (170)
T COG2061 2 FQMRITLDIELKDKPGQLLKVLQPLSKTGANIITIIHSRDKKYGPRVPVQIVFEGDR----EDKDAKIIRLL-EEEGII- 75 (170)
T ss_pred cceEEEEEEEecCCCcchhhhhcchhhcCccEEEEEeecCcccCCceeEEEEEEecc----cHHHHHHHHHH-HhCCcE-
Confidence 456777778889999999998889999999999977664433 45555666666653 23334444444 555642
Q ss_pred ceeeeCCCCCCee--EEEEEeCCchhHHHHHHhhhcCCcCeeEEE
Q 020794 118 SVVRVPDIDPKYK--VAVLASKQEHCLVDFLYGWQEGKLPVEITC 160 (321)
Q Consensus 118 ~~~r~~~~~~~~r--Iavl~S~~g~~l~~lL~~~~~~~l~~~i~~ 160 (321)
..+....+.+-+ +++++---.+++++-++++..-. .++++.
T Consensus 76 -I~~~dg~~~~~~~~vvLIGhiv~tdiqDTId~In~ig-~A~vvD 118 (170)
T COG2061 76 -IIRFDGARLREKTDVVLIGHIVHTDIQDTIDRINSIG-GAEVVD 118 (170)
T ss_pred -EEEecCcCcceeEeEEEEEeeecCcHHHHHHHhhccC-CEEEEE
Confidence 234433333333 44433333467999888864422 245543
No 180
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=77.48 E-value=39 Score=33.34 Aligned_cols=119 Identities=16% Similarity=0.260 Sum_probs=67.1
Q ss_pred CCeeEEEEEeCCchhHHHHHHhhhcCCcCeeEEEEEeCCCCCCCchHHHHHHH----cCCCEEEEcCCcchhHHHHHHHh
Q 020794 127 PKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLER----HGIPYHYLCAKENEREEELLELV 202 (321)
Q Consensus 127 ~~~rIavl~S~~g~~l~~lL~~~~~~~l~~~i~~Vis~~~~~~~~~v~~~a~~----~gIP~~~~~~~~~~~~~~~~~~l 202 (321)
+.+|+++++-++ .....|+..... +..++. |.+...-.++..+.+.|++ .|--+.... +..+.+
T Consensus 152 ~g~k~a~vGDgN-Nv~nSl~~~~a~--~G~dv~-ia~Pk~~~p~~~~~~~a~~~a~~~g~~i~~t~--------d~~eAv 219 (310)
T COG0078 152 KGLKLAYVGDGN-NVANSLLLAAAK--LGMDVR-IATPKGYEPDPEVVEKAKENAKESGGKITLTE--------DPEEAV 219 (310)
T ss_pred cCcEEEEEcCcc-hHHHHHHHHHHH--hCCeEE-EECCCcCCcCHHHHHHHHHHHHhcCCeEEEec--------CHHHHh
Confidence 458999988772 223444444221 224554 3344332245556666654 453333322 233445
Q ss_pred cCCCEEEEEeeccccchhhHhhhhhhhhhhhcccCc-ccccccccCChhHHhhcCCCeEEecCCCCCCCCC
Q 020794 203 QNTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGS-LTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKG 272 (321)
Q Consensus 203 ~~~Dlivlag~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~il~~~~l~~~~~~~INiHpslLP~yrG 272 (321)
+++|+|.+-.|-. .+-|+ +.... .-|.-+|-+.+++++..+...+=+|- ||++||
T Consensus 220 ~gADvvyTDvWvS---MGee~----------e~~~~~~~~~~~yQVn~~lm~~a~~~~ifmHC--LPA~rG 275 (310)
T COG0078 220 KGADVVYTDVWVS---MGEEA----------EAEERRIAFLPPYQVNEELMALAGPDAIFMHC--LPAHRG 275 (310)
T ss_pred CCCCEEEecCccc---Ccchh----------hhHHHHHhhCCCceeCHHHHhhcCCCeEEEeC--CCCCCC
Confidence 5889988877754 11111 11111 12233378999999999889999996 999998
No 181
>PRK14804 ornithine carbamoyltransferase; Provisional
Probab=77.25 E-value=13 Score=36.20 Aligned_cols=28 Identities=11% Similarity=0.282 Sum_probs=21.7
Q ss_pred cccccCChhHHhhcCCCeEEecCCCCCCCCCC
Q 020794 242 YFNMILSGKFLRSYGKDVINIHHGLLPSFKGG 273 (321)
Q Consensus 242 ~~~~il~~~~l~~~~~~~INiHpslLP~yrG~ 273 (321)
+.+|.+..++++.. +.+=+|| ||++||-
T Consensus 249 ~~~y~v~~elm~~~--~~~vmH~--lP~~Rg~ 276 (311)
T PRK14804 249 MMPYQINSSLMEKT--NAKVMHD--MPIHAGY 276 (311)
T ss_pred ccCCeECHHHHhCC--CCeEeCC--CCCCCCc
Confidence 44679999999853 4778898 7899884
No 182
>cd04920 ACT_AKiii-DAPDC_2 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC). This CD includes the second of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=76.65 E-value=19 Score=26.42 Aligned_cols=57 Identities=9% Similarity=0.033 Sum_probs=37.7
Q ss_pred EEEEEcC---CccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHHHHHh
Q 020794 44 IHVFHCP---DEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMF 113 (321)
Q Consensus 44 Iltv~G~---Dr~GIVA~VS~~La~~G~NI~d~~q~~~~l~g~F~Mr~~v~~~~~~~~~~~L~~~L~~la~~l 113 (321)
+++++|. +.+|+.+++.+.|.+.|++++..... +- .+.+-+ +.++..+++..+-++|
T Consensus 2 ~VsvVG~g~~~~~gv~~~~~~~L~~~~i~~i~~~~s----~~----~is~vv-----~~~d~~~av~~LH~~f 61 (63)
T cd04920 2 AVSLVGRGIRSLLHKLGPALEVFGKKPVHLVSQAAN----DL----NLTFVV-----DEDQADGLCARLHFQL 61 (63)
T ss_pred EEEEECCCcccCccHHHHHHHHHhcCCceEEEEeCC----CC----eEEEEE-----eHHHHHHHHHHHHHHH
Confidence 6889996 77999999999999988777554432 11 122222 2355666777665554
No 183
>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=75.78 E-value=16 Score=35.61 Aligned_cols=120 Identities=18% Similarity=0.168 Sum_probs=67.0
Q ss_pred chhHHHHHHh---hh-cCCcC-eeEEEEEeCCC-CCCCchHHHHHHHcCCCEEEEcCCcchh--------HHHHHHHhcC
Q 020794 139 EHCLVDFLYG---WQ-EGKLP-VEITCVISNHD-RGPNSHVIRFLERHGIPYHYLCAKENER--------EEELLELVQN 204 (321)
Q Consensus 139 g~~l~~lL~~---~~-~~~l~-~~i~~Vis~~~-~~~~~~v~~~a~~~gIP~~~~~~~~~~~--------~~~~~~~l~~ 204 (321)
.|..|+|+|. .+ .|.+. ..|+ ++.+-. ..........+...|+-+..+..++-.. ..++.+.+++
T Consensus 135 ~HPtQ~LaDl~Ti~e~~G~l~g~kv~-~vGD~~~~~v~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~d~~ea~~~ 213 (305)
T PRK00856 135 QHPTQALLDLLTIREEFGRLEGLKVA-IVGDIKHSRVARSNIQALTRLGAEVRLIAPPTLLPEGMPEYGVHTDLDEVIED 213 (305)
T ss_pred CCcHHHHHHHHHHHHHhCCCCCCEEE-EECCCCCCcHHHHHHHHHHHcCCEEEEECCcccCcccccceEEECCHHHHhCC
Confidence 4666666653 22 35554 3444 333210 1112355677888898877665432111 1234455668
Q ss_pred CCEEEEEeeccccchhhHhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeEEecCCCCCCCCCC
Q 020794 205 TDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGG 273 (321)
Q Consensus 205 ~Dlivlag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~l~~~~~~~INiHpslLP~yrG~ 273 (321)
+|++.+-+|.. |-++... .......+.+|.+..++++..+..++=+|| ||.+||-
T Consensus 214 aDvvyt~~~q~------e~~~~~~------~~~~~~~~~~y~v~~~ll~~a~~~~~~mHc--LPa~Rg~ 268 (305)
T PRK00856 214 ADVVMMLRVQK------ERMDGGL------LPSYEEYKRSYGLTAERLALAKPDAIVMHP--GPVNRGV 268 (305)
T ss_pred CCEEEECCccc------ccccccc------hHHHHHHhccCccCHHHHhhcCCCCEEECC--CCCCCCC
Confidence 99998766521 1111100 000012234669999999998888999998 7899883
No 184
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=75.59 E-value=13 Score=36.50 Aligned_cols=72 Identities=21% Similarity=0.267 Sum_probs=45.0
Q ss_pred CCeeEEEEEeCC-chh-HHHHHHhhhcCCcCeeEEEEEeCCCCCCCchHHHHHHHcCCCEEEEcCCcchhHHHHHHH--h
Q 020794 127 PKYKVAVLASKQ-EHC-LVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLEL--V 202 (321)
Q Consensus 127 ~~~rIavl~S~~-g~~-l~~lL~~~~~~~l~~~i~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~~~~~--l 202 (321)
+|+||||+|+|. |+. +..++. .. ..++++|+... +++..+++|+++|+|+.+-+ -+++++. .
T Consensus 3 ~klrVAIIGtG~IGt~hm~~l~~---~~--~velvAVvdid---~es~gla~A~~~Gi~~~~~~------ie~LL~~~~~ 68 (302)
T PRK08300 3 SKLKVAIIGSGNIGTDLMIKILR---SE--HLEPGAMVGID---PESDGLARARRLGVATSAEG------IDGLLAMPEF 68 (302)
T ss_pred CCCeEEEEcCcHHHHHHHHHHhc---CC--CcEEEEEEeCC---hhhHHHHHHHHcCCCcccCC------HHHHHhCcCC
Confidence 478999999887 554 333332 12 47888887654 23456788999999976411 2344442 1
Q ss_pred cCCCEEEEEe
Q 020794 203 QNTDFLVLAR 212 (321)
Q Consensus 203 ~~~Dlivlag 212 (321)
.+.|+++.+.
T Consensus 69 ~dIDiVf~AT 78 (302)
T PRK08300 69 DDIDIVFDAT 78 (302)
T ss_pred CCCCEEEECC
Confidence 2678887653
No 185
>PRK06635 aspartate kinase; Reviewed
Probab=74.67 E-value=45 Score=33.14 Aligned_cols=36 Identities=22% Similarity=0.159 Sum_probs=30.1
Q ss_pred EEEEEEc-CCccchHHHHHHHHHhcCCeEeEeeeecc
Q 020794 43 GIHVFHC-PDEVGIVAKLSECIASRGGNILAADVFVP 78 (321)
Q Consensus 43 ~Iltv~G-~Dr~GIVA~VS~~La~~G~NI~d~~q~~~ 78 (321)
..+++.| .+++|+.+++.+.|+++|+||.-++|...
T Consensus 263 ~~Isv~g~~~~~g~l~~i~~~L~~~~I~i~~is~s~~ 299 (404)
T PRK06635 263 AKVTVVGVPDKPGIAAQIFGALAEANINVDMIVQNVS 299 (404)
T ss_pred EEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCC
Confidence 3566665 56789999999999999999999999753
No 186
>PRK08841 aspartate kinase; Validated
Probab=74.52 E-value=15 Score=37.06 Aligned_cols=63 Identities=13% Similarity=0.080 Sum_probs=48.7
Q ss_pred cccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHHHHHhhh
Q 020794 40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNA 115 (321)
Q Consensus 40 ~~~~Iltv~G~Dr~GIVA~VS~~La~~G~NI~d~~q~~~~l~g~F~Mr~~v~~~~~~~~~~~L~~~L~~la~~lg~ 115 (321)
....+++++|...+|+.+++-+.|.++|+||+.+.+. + -.+.+.+ +.+..++++..+-++|..
T Consensus 316 ~~~a~vsvVG~~~~gv~~~~~~aL~~~~I~i~~i~~s----~--~~is~vv-------~~~~~~~av~~lH~~f~~ 378 (392)
T PRK08841 316 ESVSLLTLVGLEANGMVEHACNLLAQNGIDVRQCSTE----P--QSSMLVL-------DPANVDRAANILHKTYVT 378 (392)
T ss_pred CCEEEEEEECCCChHHHHHHHHHHHhCCCCEEEEECC----C--cEEEEEE-------eHHHHHHHHHHHHHHHcC
Confidence 4567899999999999999999999999999888773 1 1222222 346778888888888864
No 187
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=74.10 E-value=25 Score=34.80 Aligned_cols=26 Identities=23% Similarity=0.349 Sum_probs=20.5
Q ss_pred cccccCChhHHh-hcCCCeEEecCCCCCC
Q 020794 242 YFNMILSGKFLR-SYGKDVINIHHGLLPS 269 (321)
Q Consensus 242 ~~~~il~~~~l~-~~~~~~INiHpslLP~ 269 (321)
+-+|.+..++++ ..+..++=+|| ||+
T Consensus 249 ~~~y~vt~ell~~~~~~d~ivmH~--lP~ 275 (331)
T PRK02102 249 LKPYQVNMDLMKATGNPDVIFMHC--LPA 275 (331)
T ss_pred ccCCcCCHHHHhhhcCCCCEEECC--CCC
Confidence 345689999998 46778999998 566
No 188
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=74.06 E-value=11 Score=26.88 Aligned_cols=31 Identities=19% Similarity=0.194 Sum_probs=26.0
Q ss_pred EEEEcC---CccchHHHHHHHHHhcCCeEeEeee
Q 020794 45 HVFHCP---DEVGIVAKLSECIASRGGNILAADV 75 (321)
Q Consensus 45 ltv~G~---Dr~GIVA~VS~~La~~G~NI~d~~q 75 (321)
|++.+. +++|..++|-+.|+++|+|+.-+.+
T Consensus 3 i~i~~~~m~~~~~~~~~if~~l~~~~i~v~~i~t 36 (62)
T cd04890 3 IEIFDQLMNGEVGFLRKIFEILEKHGISVDLIPT 36 (62)
T ss_pred EEEeccccCcccCHHHHHHHHHHHcCCeEEEEec
Confidence 444444 6789999999999999999999976
No 189
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=72.61 E-value=19 Score=39.80 Aligned_cols=41 Identities=20% Similarity=0.328 Sum_probs=35.7
Q ss_pred ccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCC
Q 020794 41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKN 82 (321)
Q Consensus 41 ~~~Iltv~G~Dr~GIVA~VS~~La~~G~NI~d~~q~~~~l~g 82 (321)
.-.=|+|.+||+|..-+.|+..+..+|+||.|.+-++. .+|
T Consensus 683 ~~teV~V~a~d~p~Lfa~v~~~~~~~g~~i~dAqi~tt-~dG 723 (867)
T COG2844 683 GGTEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTT-RDG 723 (867)
T ss_pred CceEEEEEcCCCccHHHHHHHHHccCCCceeeeEEEEc-cCC
Confidence 44568999999999999999999999999999988764 456
No 190
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=72.36 E-value=30 Score=37.61 Aligned_cols=66 Identities=15% Similarity=0.213 Sum_probs=49.2
Q ss_pred cccEEEEEEc-CCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeC-CCCCChHHHHHHHHH
Q 020794 40 LTHGIHVFHC-PDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFD-PIKWPREQMDEDFFK 108 (321)
Q Consensus 40 ~~~~Iltv~G-~Dr~GIVA~VS~~La~~G~NI~d~~q~~~~l~g~F~Mr~~v~~~-~~~~~~~~L~~~L~~ 108 (321)
.....+||.. ||++|.+.++..+|+-+|-+|...+... +|.....+.|... +.+.+...|++++..
T Consensus 544 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~---~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 611 (693)
T PRK00227 544 EEDGFFTVIWHGDYPRELVRVLALIAAKGWNILSARMVA---NGPWSAEFDVRANGPQDFDPQEFLQAYKS 611 (693)
T ss_pred ccCCeEEEEecCCcccHHHHHHHHHHhcCceeeEeEEec---CCceEEEEEEecCCCCCCChHHHHHHHHH
Confidence 3346788888 9999999999999999999999998864 5665544444411 234567788887774
No 191
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=72.14 E-value=48 Score=32.85 Aligned_cols=59 Identities=19% Similarity=0.255 Sum_probs=36.0
Q ss_pred HHHhcCCCEEEEEeeccccchhhHhhhhhhhhhhhcccCcccccccccCChhHHhhc-CCCeEEecCCCCCCCC
Q 020794 199 LELVQNTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSY-GKDVINIHHGLLPSFK 271 (321)
Q Consensus 199 ~~~l~~~Dlivlag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~l~~~-~~~~INiHpslLP~yr 271 (321)
.+.++++|+|.+-.|... ..++|.+..+ ...+.+|-+..++++.. +..+|=+|| ||+++
T Consensus 220 ~~a~~~aDvvyt~~w~sm-~~~~~~~~~~-----------~~~~~~y~v~~ell~~a~~~~~i~mHc--LP~~~ 279 (334)
T PRK12562 220 AAGVKGADFIYTDVWVSM-GEPKEKWAER-----------IALLRGYQVNSKMMALTGNPQVKFLHC--LPAFH 279 (334)
T ss_pred HHHhCCCCEEEEcCcccc-ccchhhHHHH-----------HHhccCCcCCHHHHHhhcCCCCEEECC--CCCCC
Confidence 344558999988877320 0011111111 12244569999999885 567999998 68865
No 192
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=71.84 E-value=26 Score=33.92 Aligned_cols=70 Identities=20% Similarity=0.194 Sum_probs=41.7
Q ss_pred CeeEEEEEeCC-chhH-HHHHHhhhcCCcCeeEEEEEeCCCCCCCchHHHHHHHcCCCEEEEcCCcchhHHHHHHHhcCC
Q 020794 128 KYKVAVLASKQ-EHCL-VDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNT 205 (321)
Q Consensus 128 ~~rIavl~S~~-g~~l-~~lL~~~~~~~l~~~i~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~~~~~l~~~ 205 (321)
|+||||+|+|. |..+ ..++. .. ..++++|+...+ ++..+++|+++|+|+.+-+ .+++++- .+.
T Consensus 1 klrVAIIG~G~IG~~h~~~ll~---~~--~~elvaV~d~d~---es~~la~A~~~Gi~~~~~~------~e~ll~~-~dI 65 (285)
T TIGR03215 1 KVKVAIIGSGNIGTDLMYKLLR---SE--HLEMVAMVGIDP---ESDGLARARELGVKTSAEG------VDGLLAN-PDI 65 (285)
T ss_pred CcEEEEEeCcHHHHHHHHHHHh---CC--CcEEEEEEeCCc---ccHHHHHHHHCCCCEEECC------HHHHhcC-CCC
Confidence 47999999976 4432 34433 12 478887775432 3345678999999986511 1222221 157
Q ss_pred CEEEEEe
Q 020794 206 DFLVLAR 212 (321)
Q Consensus 206 Dlivlag 212 (321)
|+++.+.
T Consensus 66 DaV~iaT 72 (285)
T TIGR03215 66 DIVFDAT 72 (285)
T ss_pred CEEEECC
Confidence 7777653
No 193
>PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated
Probab=70.67 E-value=57 Score=33.16 Aligned_cols=29 Identities=10% Similarity=0.134 Sum_probs=23.2
Q ss_pred ccccccCChhHHhhcCCC-eEEecCCCCCCCC
Q 020794 241 SYFNMILSGKFLRSYGKD-VINIHHGLLPSFK 271 (321)
Q Consensus 241 ~~~~~il~~~~l~~~~~~-~INiHpslLP~yr 271 (321)
.+.+|-+..++++..+.+ ++=+|| ||++|
T Consensus 305 ~~~~y~v~~elm~~a~~~~ai~MHc--LPa~r 334 (395)
T PRK07200 305 QHKDWHCTEEMMKLTKDGKALYMHC--LPADI 334 (395)
T ss_pred HccCCCcCHHHHhccCCCCcEEECC--CCCCC
Confidence 456679999999988764 999998 67874
No 194
>PLN02551 aspartokinase
Probab=70.67 E-value=70 Score=33.58 Aligned_cols=86 Identities=10% Similarity=0.135 Sum_probs=52.3
Q ss_pred cEEEEEEcC---CccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHHHHHhhhccc
Q 020794 42 HGIHVFHCP---DEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRS 118 (321)
Q Consensus 42 ~~Iltv~G~---Dr~GIVA~VS~~La~~G~NI~d~~q~~~~l~g~F~Mr~~v~~~~~~~~~~~L~~~L~~la~~lg~~~~ 118 (321)
-..+++.|. +++|..++|-+.|+++|+||.-+.+. + ...-+.++-+.. ...+.+++.|+.+..+++- .
T Consensus 366 v~li~i~~~~m~~~~g~~arvf~~l~~~~I~Vd~IssS----e--~sIs~~v~~~~~-~~~~~i~~~l~~l~~el~~-~- 436 (521)
T PLN02551 366 VTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATS----E--VSISLTLDPSKL-WSRELIQQELDHLVEELEK-I- 436 (521)
T ss_pred eEEEEEecCCCCCcccHHHHHHHHHHHcCCcEEEEecc----C--CEEEEEEehhHh-hhhhhHHHHHHHHHHHhhc-C-
Confidence 357888776 58999999999999999999999764 1 122223332221 1133455566665555531 1
Q ss_pred eeeeCCCCCCeeEEEEEeC
Q 020794 119 VVRVPDIDPKYKVAVLASK 137 (321)
Q Consensus 119 ~~r~~~~~~~~rIavl~S~ 137 (321)
.++...+..-+|++.+..
T Consensus 437 -~~V~v~~~vAiISvVG~~ 454 (521)
T PLN02551 437 -AVVNLLQGRSIISLIGNV 454 (521)
T ss_pred -CeEEEeCCEEEEEEEccC
Confidence 112233456678887764
No 195
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=70.32 E-value=47 Score=33.74 Aligned_cols=56 Identities=7% Similarity=0.033 Sum_probs=34.5
Q ss_pred eeEEEEEeCCchhHHHHHHhhhcCCcCeeEEEEEeCCCCCCCchHHHHHHHcCCCEEEEc
Q 020794 129 YKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC 188 (321)
Q Consensus 129 ~rIavl~S~~g~~l~~lL~~~~~~~l~~~i~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~ 188 (321)
+||+|+||... -=..-|+.++...-..+|+++..++. -.-+.+.|++++-.+..+.
T Consensus 2 k~VaILGsTGS-IG~~tL~vi~~~p~~f~VvaLaa~~n---~~~l~~q~~~f~p~~v~i~ 57 (385)
T PRK05447 2 KRITILGSTGS-IGTQTLDVIRRNPDRFRVVALSAGKN---VELLAEQAREFRPKYVVVA 57 (385)
T ss_pred ceEEEEcCChH-HHHHHHHHHHhCccccEEEEEEcCCC---HHHHHHHHHHhCCCEEEEc
Confidence 69999996432 11122233322222478888876652 2467889999998777664
No 196
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=70.07 E-value=89 Score=28.85 Aligned_cols=120 Identities=15% Similarity=0.197 Sum_probs=75.1
Q ss_pred EEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHHHHHhhhccceeeeC
Q 020794 44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRVP 123 (321)
Q Consensus 44 Iltv~G~Dr~GIVA~VS~~La~~G~NI~d~~q~~~~l~g~F~Mr~~v~~~~~~~~~~~L~~~L~~la~~lg~~~~~~r~~ 123 (321)
++-|.=.+...-...+...|.+.|+.++|++.+.. . -.+.++++.++++.
T Consensus 15 vi~vir~~~~~~a~~~~~al~~~Gi~~iEit~~~~-------------------~---a~~~i~~l~~~~~~-------- 64 (213)
T PRK06552 15 VVAVVRGESKEEALKISLAVIKGGIKAIEVTYTNP-------------------F---ASEVIKELVELYKD-------- 64 (213)
T ss_pred EEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCc-------------------c---HHHHHHHHHHHcCC--------
Confidence 34444455666667889999999999999977521 1 12445555555421
Q ss_pred CCCCCeeEEEEEeCCchhHHHHHHhhhcCCcCeeEEEEEeCCCCCCCchHHHHHHHcCCCEEEEcCCcchhHHHHHHHhc
Q 020794 124 DIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ 203 (321)
Q Consensus 124 ~~~~~~rIavl~S~~g~~l~~lL~~~~~~~l~~~i~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~~~~~l~ 203 (321)
++ + ++++.|+-.+.+++-.....| + .+++|.. -+..+.++|+++|||+..-.. ...|+.+.++
T Consensus 65 --~p--~-~~vGaGTV~~~~~~~~a~~aG---A--~FivsP~---~~~~v~~~~~~~~i~~iPG~~----T~~E~~~A~~ 127 (213)
T PRK06552 65 --DP--E-VLIGAGTVLDAVTARLAILAG---A--QFIVSPS---FNRETAKICNLYQIPYLPGCM----TVTEIVTALE 127 (213)
T ss_pred --CC--C-eEEeeeeCCCHHHHHHHHHcC---C--CEEECCC---CCHHHHHHHHHcCCCEECCcC----CHHHHHHHHH
Confidence 11 2 235566655566655555555 2 3456654 356899999999999885332 2345666665
Q ss_pred -CCCEEEE
Q 020794 204 -NTDFLVL 210 (321)
Q Consensus 204 -~~Dlivl 210 (321)
.+|++=+
T Consensus 128 ~Gad~vkl 135 (213)
T PRK06552 128 AGSEIVKL 135 (213)
T ss_pred cCCCEEEE
Confidence 8999865
No 197
>cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydro
Probab=70.04 E-value=13 Score=28.49 Aligned_cols=25 Identities=8% Similarity=0.038 Sum_probs=23.0
Q ss_pred ccchHHHHHHHHHhcCCeEeEeeee
Q 020794 52 EVGIVAKLSECIASRGGNILAADVF 76 (321)
Q Consensus 52 r~GIVA~VS~~La~~G~NI~d~~q~ 76 (321)
.+|..++|-+.|+++|+|+.-+.|.
T Consensus 14 ~~g~~~~If~~la~~~I~vd~I~~s 38 (73)
T cd04934 14 SHGFLARIFAILDKYRLSVDLISTS 38 (73)
T ss_pred ccCHHHHHHHHHHHcCCcEEEEEeC
Confidence 4899999999999999999999873
No 198
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=69.52 E-value=17 Score=31.87 Aligned_cols=58 Identities=21% Similarity=0.277 Sum_probs=36.6
Q ss_pred eEEEEEeCCc--hhHHHHHHhhhcCCcCeeEEEEEeCCCCCCC-----chHHHHHHHcCCCEEEEc
Q 020794 130 KVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGPN-----SHVIRFLERHGIPYHYLC 188 (321)
Q Consensus 130 rIavl~S~~g--~~l~~lL~~~~~~~l~~~i~~Vis~~~~~~~-----~~v~~~a~~~gIP~~~~~ 188 (321)
||+|-.||+. ..|-.+|..++. ..+.++.+|..+|.-... ..+.++|+++|||+....
T Consensus 1 ki~va~SGG~DS~~Ll~~l~~~~~-~~~~~~~~~~vdh~~~~~s~~~~~~v~~~~~~~~i~~~~~~ 65 (182)
T PF01171_consen 1 KILVAVSGGKDSMALLHLLKELRR-RNGIKLIAVHVDHGLREESDEEAEFVEEICEQLGIPLYIVR 65 (182)
T ss_dssp EEEEE--SSHHHHHHHHHHHHHHT-TTTTEEEEEEEE-STSCCHHHHHHHHHHHHHHTT-EEEEEE
T ss_pred CEEEEEcCCHHHHHHHHHHHHHHH-hcCCCeEEEEEecCCCcccchhHHHHHHHHHhcCCceEEEE
Confidence 7889999864 345556655543 234588888777743222 368899999999998765
No 199
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=69.47 E-value=18 Score=34.18 Aligned_cols=72 Identities=18% Similarity=0.212 Sum_probs=40.5
Q ss_pred CCeeEEEEEeCCchhHHHHHHhhhcCCcCeeEEEEEeCCCCCCCchHHHHHHHcCCCEEEEcCCcchhHHHHHHHhc--C
Q 020794 127 PKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ--N 204 (321)
Q Consensus 127 ~~~rIavl~S~~g~~l~~lL~~~~~~~l~~~i~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~~~~~l~--~ 204 (321)
+++||+|+|.|.... +..+..+++..-..++++|+...+ ....++++++|++ .... ++.++++ +
T Consensus 2 ~~irvgiiG~G~~~~-~~~~~~~~~~~~~~~~vav~d~~~----~~a~~~a~~~~~~-~~~~--------~~~~ll~~~~ 67 (342)
T COG0673 2 KMIRVGIIGAGGIAG-KAHLPALAALGGGLELVAVVDRDP----ERAEAFAEEFGIA-KAYT--------DLEELLADPD 67 (342)
T ss_pred CeeEEEEEcccHHHH-HHhHHHHHhCCCceEEEEEecCCH----HHHHHHHHHcCCC-cccC--------CHHHHhcCCC
Confidence 578999999884211 112222222110057777765542 3578899999999 2222 2334444 4
Q ss_pred CCEEEEEe
Q 020794 205 TDFLVLAR 212 (321)
Q Consensus 205 ~Dlivlag 212 (321)
+|+++++.
T Consensus 68 iD~V~Iat 75 (342)
T COG0673 68 IDAVYIAT 75 (342)
T ss_pred CCEEEEcC
Confidence 68777663
No 200
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=69.17 E-value=24 Score=35.00 Aligned_cols=62 Identities=13% Similarity=0.185 Sum_probs=43.3
Q ss_pred cccEEEEEEcC---CccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHHHHHhh
Q 020794 40 LTHGIHVFHCP---DEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFN 114 (321)
Q Consensus 40 ~~~~Iltv~G~---Dr~GIVA~VS~~La~~G~NI~d~~q~~~~l~g~F~Mr~~v~~~~~~~~~~~L~~~L~~la~~lg 114 (321)
....+++++|. +++|+.+++.+.|+++|+||+-+... +.... +-+ +.+...++++.+-++|.
T Consensus 335 ~~~a~IsvVG~~~~~~~g~~a~i~~~L~~~gIni~~i~~s----~~~is----~vv-----~~~d~~~av~~Lh~~f~ 399 (401)
T TIGR00656 335 EGLAKVSIVGAGMVGAPGVASEIFSALEEKNINILMIGSS----ETNIS----FLV-----DEKDAEKAVRKLHEVFE 399 (401)
T ss_pred CCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEEEcC----CCEEE----EEE-----eHHHHHHHHHHHHHHHc
Confidence 44568889996 78999999999999999999865421 22222 222 23556677777777663
No 201
>PLN02696 1-deoxy-D-xylulose-5-phosphate reductoisomerase
Probab=68.33 E-value=24 Score=36.60 Aligned_cols=79 Identities=9% Similarity=0.093 Sum_probs=48.2
Q ss_pred CCeeEEEEEe-CC-chhHHHHHHhhhcCCcCeeEEEEEeCCCCCCCchHHHHHHHcCCCEEEEcCCcch-----------
Q 020794 127 PKYKVAVLAS-KQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENE----------- 193 (321)
Q Consensus 127 ~~~rIavl~S-~~-g~~l~~lL~~~~~~~l~~~i~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~----------- 193 (321)
..+||+|||| |+ |+.--+++.+..+ ..+++++-.++. -.-+.+.|+++.-.+..+......
T Consensus 56 ~~KkI~ILGSTGSIGtqtLdVI~~~pd---~f~vvaLaag~N---i~lL~~q~~~f~p~~v~v~d~~~~~~l~~~l~~~~ 129 (454)
T PLN02696 56 GPKPISLLGSTGSIGTQTLDIVAENPD---KFKVVALAAGSN---VTLLADQVRKFKPKLVAVRNESLVDELKEALADLD 129 (454)
T ss_pred CccEEEEecCCcHhhHHHHHHHHhCcc---ccEEEEEECCCC---HHHHHHHHHHhCCCEEEEcCHHHHHHHHHhhcCCC
Confidence 3579999998 54 5555556664321 377887766541 235567788888777665421100
Q ss_pred -------hHHHHHHHhc--CCCEEEEE
Q 020794 194 -------REEELLELVQ--NTDFLVLA 211 (321)
Q Consensus 194 -------~~~~~~~~l~--~~Dlivla 211 (321)
-++.+.+++. ++|++|.|
T Consensus 130 ~~~~vl~G~egl~~la~~~evDiVV~A 156 (454)
T PLN02696 130 DKPEIIPGEEGIVEVARHPEAVTVVTG 156 (454)
T ss_pred CCcEEEECHHHHHHHHcCCCCCEEEEe
Confidence 1245666665 57988765
No 202
>COG3603 Uncharacterized conserved protein [Function unknown]
Probab=68.19 E-value=7.2 Score=33.52 Aligned_cols=35 Identities=26% Similarity=0.400 Sum_probs=31.5
Q ss_pred EEEEEEcC---CccchHHHHHHHHHhcCCeEeEeeeec
Q 020794 43 GIHVFHCP---DEVGIVAKLSECIASRGGNILAADVFV 77 (321)
Q Consensus 43 ~Iltv~G~---Dr~GIVA~VS~~La~~G~NI~d~~q~~ 77 (321)
..+++.|| |-+||+|.|++-|+++|+-|--++.+.
T Consensus 64 ~~lk~~gpf~FgltGilasV~~pLsd~gigIFavStyd 101 (128)
T COG3603 64 SCLKFEGPFDFGLTGILASVSQPLSDNGIGIFAVSTYD 101 (128)
T ss_pred EEEEEeccccCCcchhhhhhhhhHhhCCccEEEEEecc
Confidence 47788887 789999999999999999999999984
No 203
>PF03054 tRNA_Me_trans: tRNA methyl transferase; InterPro: IPR004506 tRNA-specific 2-thiouridylase catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.; GO: 0016740 transferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 2DET_A 2DER_A 2DEU_A 2HMA_A.
Probab=67.91 E-value=14 Score=36.98 Aligned_cols=118 Identities=23% Similarity=0.284 Sum_probs=58.5
Q ss_pred eeEEEEEeCCc-hhHHH-HHHhhhcCCcCeeEEEEEeCCCCCCC------------chHHHHHHHcCCCEEEEcCCc---
Q 020794 129 YKVAVLASKQE-HCLVD-FLYGWQEGKLPVEITCVISNHDRGPN------------SHVIRFLERHGIPYHYLCAKE--- 191 (321)
Q Consensus 129 ~rIavl~S~~g-~~l~~-lL~~~~~~~l~~~i~~Vis~~~~~~~------------~~v~~~a~~~gIP~~~~~~~~--- 191 (321)
|||+|..||.- |.+.+ ||. ++| ++|.+|....-+..+ ..+.+.|+..|||++.++-.+
T Consensus 1 ~kV~vamSGGVDSsvaA~LLk--~~G---~~V~Gv~m~~~~~~~~~~~~c~~~~d~~~a~~va~~LgIp~~v~d~~~~f~ 75 (356)
T PF03054_consen 1 KKVLVAMSGGVDSSVAAALLK--EQG---YDVIGVTMRNWDEEDESGKSCCSEEDIEDARRVAEKLGIPHYVVDLREEFW 75 (356)
T ss_dssp -EEEEE--SSHHHHHHHHHHH--HCT----EEEEEEEE-SS-SSSHH-HHHHHHHHHHHHHHHHHHT--EEEEETHHHHH
T ss_pred CeEEEEccCCHHHHHHHHHHH--hhc---ccceEEEEEEeccccccCCCCCchhhHHHHHHHHHhcCCCEEEEChHHHHH
Confidence 69999999973 55544 444 244 799888765433221 236888999999999987311
Q ss_pred -----------------ch----hH----HHHHHHhc---CCCEEEEEeeccccchhhHhhhhhhhhhhhcccCcccccc
Q 020794 192 -----------------NE----RE----EELLELVQ---NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYF 243 (321)
Q Consensus 192 -----------------~~----~~----~~~~~~l~---~~Dlivlag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (321)
|. +. ..+++... ++|.+.+..|-++...+ -.+.|.|+...-..-+|| ||
T Consensus 76 ~~Vi~~f~~~Y~~G~TPNPcv~CN~~IKF~~l~~~a~~~~g~d~iATGHYAri~~~~--~~~~~~L~r~~D~~KDQS-Yf 152 (356)
T PF03054_consen 76 EEVIEPFLDEYRKGRTPNPCVLCNRFIKFGALLEYADEGLGADYIATGHYARIEKDE--KNGRYRLLRGADPKKDQS-YF 152 (356)
T ss_dssp HHTHHHHHHHHHTT----HHHHHHHHTTTTHHHHHHHTTTT-SEEE---SEEEEEES---TTEEEEEE-SSTTC--G-GG
T ss_pred HHHHHHHHHHHhcCCCCChHHhhchhhhHHHHHHHHHhhcCCCeeccceeEEEEeec--cCCceEEEecCCCCCCce-EE
Confidence 00 00 24444443 58999999999855421 234455555554444454 44
Q ss_pred cccCChhHHhh
Q 020794 244 NMILSGKFLRS 254 (321)
Q Consensus 244 ~~il~~~~l~~ 254 (321)
=+-|+++.|++
T Consensus 153 L~~l~~~~L~~ 163 (356)
T PF03054_consen 153 LSRLPQEQLSR 163 (356)
T ss_dssp GTT--HHHHCC
T ss_pred EEecCHHHHHh
Confidence 44556666654
No 204
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=67.82 E-value=28 Score=35.67 Aligned_cols=89 Identities=20% Similarity=0.337 Sum_probs=60.4
Q ss_pred EEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHHHHHhhhccceeeeCC
Q 020794 45 HVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRVPD 124 (321)
Q Consensus 45 ltv~G~Dr~GIVA~VS~~La~~G~NI~d~~q~~~~l~g~F~Mr~~v~~~~~~~~~~~L~~~L~~la~~lg~~~~~~r~~~ 124 (321)
+.|+|.||.||.-.+=+.|...|+|.-.+.. |... ++.+.+|+. +++.+.+-..++- +++.
T Consensus 3 leV~cedRlGltrelLdlLv~r~idl~~iEi--d~~~-----~IYln~p~l--~~~~fs~L~aei~----------~I~G 63 (511)
T COG3283 3 LEVFCEDRLGLTRELLDLLVLRGIDLRGIEI--DPIG-----RIYLNFPEL--EFESFSSLMAEIR----------RIPG 63 (511)
T ss_pred eEEEehhhhchHHHHHHHHHhcccCccceee--cCCC-----eEEEecccc--CHHHHHHHHHHHh----------cCCC
Confidence 6799999999999999999999999877665 2222 666777764 4444444332221 1333
Q ss_pred CCCCeeEEEEEeCCch-hHHHHHHhhhcC
Q 020794 125 IDPKYKVAVLASKQEH-CLVDFLYGWQEG 152 (321)
Q Consensus 125 ~~~~~rIavl~S~~g~-~l~~lL~~~~~~ 152 (321)
-...++|.+|-|-..+ .|.+||.+..+.
T Consensus 64 V~~vr~V~~mPseR~hl~L~aLL~al~~p 92 (511)
T COG3283 64 VTDVRTVPWMPSEREHLALSALLEALPEP 92 (511)
T ss_pred ccceeeecCCcchhHhHHHHHHHHhCCCc
Confidence 3456788888777664 578898875433
No 205
>PRK09181 aspartate kinase; Validated
Probab=67.64 E-value=1e+02 Score=32.02 Aligned_cols=82 Identities=11% Similarity=0.007 Sum_probs=52.4
Q ss_pred ccEEEEEEcC---CccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHHHHHhhhcc
Q 020794 41 THGIHVFHCP---DEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMR 117 (321)
Q Consensus 41 ~~~Iltv~G~---Dr~GIVA~VS~~La~~G~NI~d~~q~~~~l~g~F~Mr~~v~~~~~~~~~~~L~~~L~~la~~lg~~~ 117 (321)
.-..+++.|. +.+|+.++|-..|+++|+||.-+.+.. ..+. +-++. +.+.+++.++.+.++++...
T Consensus 328 ~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~v~~i~ss~----~sis----~~v~~---~~~~~~~~~~~L~~~~~~~~ 396 (475)
T PRK09181 328 KVFALEVFDQDMVGEDGYDLEILEILTRHKVSYISKATNA----NTIT----HYLWG---SLKTLKRVIAELEKRYPNAE 396 (475)
T ss_pred CEEEEEEcCCCCCCcchHHHHHHHHHHHcCCeEEEEEecC----cEEE----EEEcC---ChHHHHHHHHHHHHhcCCce
Confidence 3456788665 689999999999999999998665531 1222 22332 12445666777776675321
Q ss_pred ceeeeCCCCCCeeEEEEEeCC
Q 020794 118 SVVRVPDIDPKYKVAVLASKQ 138 (321)
Q Consensus 118 ~~~r~~~~~~~~rIavl~S~~ 138 (321)
+.. +..-+|++.|.+-
T Consensus 397 ----i~~-~~~a~VsvVG~gm 412 (475)
T PRK09181 397 ----VTV-RKVAIVSAIGSNI 412 (475)
T ss_pred ----EEE-CCceEEEEeCCCC
Confidence 222 4567788888764
No 206
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=67.30 E-value=31 Score=26.50 Aligned_cols=71 Identities=20% Similarity=0.218 Sum_probs=38.4
Q ss_pred eEEEEEeCCchhHHHHHHhhhc-CCcCeeEEEEEeCCCCCCCchHHHHHHHcCCCEEEEcCCcchhHHHHHHHhcCCCEE
Q 020794 130 KVAVLASKQEHCLVDFLYGWQE-GKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDFL 208 (321)
Q Consensus 130 rIavl~S~~g~~l~~lL~~~~~-~~l~~~i~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~~~~~l~~~Dli 208 (321)
||+|++.|+ --.+|+..+.. |.-+.+|..+.+.+ .....+++++.++.+...+ ..++.+ ++|++
T Consensus 1 kI~iIG~G~--mg~al~~~l~~~g~~~~~v~~~~~r~----~~~~~~~~~~~~~~~~~~~------~~~~~~---~advv 65 (96)
T PF03807_consen 1 KIGIIGAGN--MGSALARGLLASGIKPHEVIIVSSRS----PEKAAELAKEYGVQATADD------NEEAAQ---EADVV 65 (96)
T ss_dssp EEEEESTSH--HHHHHHHHHHHTTS-GGEEEEEEESS----HHHHHHHHHHCTTEEESEE------HHHHHH---HTSEE
T ss_pred CEEEECCCH--HHHHHHHHHHHCCCCceeEEeeccCc----HHHHHHHHHhhccccccCC------hHHhhc---cCCEE
Confidence 789986554 33344444333 22346776543433 2356778888886555321 223333 79999
Q ss_pred EEEeecc
Q 020794 209 VLARYMQ 215 (321)
Q Consensus 209 vlag~~~ 215 (321)
|++=-.+
T Consensus 66 ilav~p~ 72 (96)
T PF03807_consen 66 ILAVKPQ 72 (96)
T ss_dssp EE-S-GG
T ss_pred EEEECHH
Confidence 9874443
No 207
>PRK07431 aspartate kinase; Provisional
Probab=66.97 E-value=52 Score=34.61 Aligned_cols=99 Identities=14% Similarity=0.102 Sum_probs=59.9
Q ss_pred EEEEE-cCCccchHHHHHHHHHhcCCeEeEeeeeccCCC-CeEEEEEEEEeCCCCCChHHHHHHHHHHHHHhhhccceee
Q 020794 44 IHVFH-CPDEVGIVAKLSECIASRGGNILAADVFVPEKK-NVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVR 121 (321)
Q Consensus 44 Iltv~-G~Dr~GIVA~VS~~La~~G~NI~d~~q~~~~l~-g~F~Mr~~v~~~~~~~~~~~L~~~L~~la~~lg~~~~~~r 121 (321)
.+++. -++++|+.+++.+.|+++|+||.-++|+....+ |.- .+.+-++. .+.+.+++.++++.++++. .+
T Consensus 441 ~i~l~~~~~~~g~~a~if~~l~~~~i~id~i~~~~~~~~~~~~--~isf~v~~--~~~~~~~~~l~~l~~~~~~----~~ 512 (587)
T PRK07431 441 QLAIRNVPDRPGMAASIFGALAEANISVDMIVQSQRCRSDGTR--DISFTVPK--EDREAAQKVLRELAKQLPG----AE 512 (587)
T ss_pred EEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCCCce--eEEEEEcH--HHHHHHHHHHHHHHHhcCC----ce
Confidence 44443 467899999999999999999999999643221 121 23344443 2455566667766666642 11
Q ss_pred eCCCCCCeeEEEEEeCCc---hhHHHHHHhhh
Q 020794 122 VPDIDPKYKVAVLASKQE---HCLVDFLYGWQ 150 (321)
Q Consensus 122 ~~~~~~~~rIavl~S~~g---~~l~~lL~~~~ 150 (321)
+...+..-+|.+.|.+-. ..+..++....
T Consensus 513 i~~~~~va~VSvVG~gm~~~~gv~~ri~~aL~ 544 (587)
T PRK07431 513 VEDGPAIAKVSIVGAGMPGTPGVAARMFRALA 544 (587)
T ss_pred EEEeCCeEEEEEECCCccCCcCHHHHHHHHHH
Confidence 222345678888887642 23445555443
No 208
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=66.23 E-value=1.8e+02 Score=33.43 Aligned_cols=161 Identities=16% Similarity=0.147 Sum_probs=78.3
Q ss_pred ccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccC-CCCeEEEEEEEEeCCCCCChHHHHHHHHHHHHHhhhccce
Q 020794 41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPE-KKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSV 119 (321)
Q Consensus 41 ~~~Iltv~G~Dr~GIVA~VS~~La~~G~NI~d~~q~~~~-l~g~F~Mr~~v~~~~~~~~~~~L~~~L~~la~~lg~~~~~ 119 (321)
.+.-++-+--|. |++.++=..+-..||-..=....+.. -+..=...|++..+ |.+.|..-++++...-....+.
T Consensus 462 ~~v~l~ghl~d~-~lin~~ld~i~~~gg~~~~~~~~~gqs~~~~S~~~l~v~a~----d~~~L~~i~~~l~~la~~~~~~ 536 (1042)
T PLN02819 462 ILVSLSGHLFDK-FLINEALDVIEAAGGSFHLAKCQVGQSADAESYSELEVGAD----DKEVLDQIIDSLTRLANPNEDY 536 (1042)
T ss_pred EEEEeeeecccc-hhhhhhhhhhhccCCceeeeeeccccCcccccceeeecccC----cHHHHHHHHHHHHHhccccccc
Confidence 344455555666 99999877777777644333332211 11111234555443 3455555555443221100000
Q ss_pred ----------------------e-e-eCCCCCCeeEEEEEeCC-chhHHHHHHhhhc-------CCcCeeEEEEEeCCCC
Q 020794 120 ----------------------V-R-VPDIDPKYKVAVLASKQ-EHCLVDFLYGWQE-------GKLPVEITCVISNHDR 167 (321)
Q Consensus 120 ----------------------~-r-~~~~~~~~rIavl~S~~-g~~l~~lL~~~~~-------~~l~~~i~~Vis~~~~ 167 (321)
. + .....+++||+|+|+|. |+.....|..... ++-+..+..++++..
T Consensus 537 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~- 615 (1042)
T PLN02819 537 ISPAREANKIFLKIGKVQQENECNEKAEVTKKSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLY- 615 (1042)
T ss_pred cccchhhhhhhhhhhcccccccccccccccccCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCC-
Confidence 0 0 11123578999999987 4544444432110 000111223444442
Q ss_pred CCCchHHHHHHHc-CCCEEEEcCCcchhHHHHHHHhcCCCEEEEEe
Q 020794 168 GPNSHVIRFLERH-GIPYHYLCAKENEREEELLELVQNTDFLVLAR 212 (321)
Q Consensus 168 ~~~~~v~~~a~~~-gIP~~~~~~~~~~~~~~~~~~l~~~Dlivlag 212 (321)
.....+.+++. ++....++- ...+++.+++.++|+|+.+-
T Consensus 616 --~~~a~~la~~~~~~~~v~lDv---~D~e~L~~~v~~~DaVIsal 656 (1042)
T PLN02819 616 --LKDAKETVEGIENAEAVQLDV---SDSESLLKYVSQVDVVISLL 656 (1042)
T ss_pred --HHHHHHHHHhcCCCceEEeec---CCHHHHHHhhcCCCEEEECC
Confidence 12345566655 665555542 12356777777899887763
No 209
>PRK11898 prephenate dehydratase; Provisional
Probab=65.86 E-value=37 Score=32.68 Aligned_cols=67 Identities=15% Similarity=0.066 Sum_probs=41.4
Q ss_pred cEEEEEEcC-CccchHHHHHHHHHhcCCeEeEeeeeccC-CCCeEEEEEEEEeCCCCCChHHHHHHHHHHHH
Q 020794 42 HGIHVFHCP-DEVGIVAKLSECIASRGGNILAADVFVPE-KKNVFYSRSEFIFDPIKWPREQMDEDFFKLSK 111 (321)
Q Consensus 42 ~~Iltv~G~-Dr~GIVA~VS~~La~~G~NI~d~~q~~~~-l~g~F~Mr~~v~~~~~~~~~~~L~~~L~~la~ 111 (321)
+.-+.+.-+ |+||-.+++=+.++++|+|++.+...-.. ..+.|.-.++++.. .+.+.+++.|+.+.+
T Consensus 196 ktslif~l~~~~pGsL~~~L~~F~~~~INLt~IeSRP~~~~~~~y~F~vd~eg~---~~~~~~~~al~~L~~ 264 (283)
T PRK11898 196 KTSLVLTLPNNLPGALYKALSEFAWRGINLTRIESRPTKTGLGTYFFFIDVEGH---IDDVLVAEALKELEA 264 (283)
T ss_pred eEEEEEEeCCCCccHHHHHHHHHHHCCCCeeeEecccCCCCCccEEEEEEEEcc---CCCHHHHHHHHHHHH
Confidence 333334444 46999999999999999999998776211 12223334444432 233467777776644
No 210
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=65.83 E-value=38 Score=31.97 Aligned_cols=70 Identities=19% Similarity=0.273 Sum_probs=44.8
Q ss_pred chhHHH--HHHhhhcCCcCeeEEEEEeCCCCCCCchHHHHHHHcCCCEEEEcCCcch--hHHHHHHHhc--CCCEEEEEe
Q 020794 139 EHCLVD--FLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENE--REEELLELVQ--NTDFLVLAR 212 (321)
Q Consensus 139 g~~l~~--lL~~~~~~~l~~~i~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~--~~~~~~~~l~--~~Dlivlag 212 (321)
||.++. |.+.+++. .+++.+++.... ....+..++.|.|+..++...+. ..+++.++++ ++|++|+-+
T Consensus 15 GHv~Rcl~LA~~l~~~--g~~v~f~~~~~~----~~~~~~i~~~g~~v~~~~~~~~~~~d~~~~~~~l~~~~~d~vV~D~ 88 (279)
T TIGR03590 15 GHVMRCLTLARALHAQ--GAEVAFACKPLP----GDLIDLLLSAGFPVYELPDESSRYDDALELINLLEEEKFDILIVDH 88 (279)
T ss_pred cHHHHHHHHHHHHHHC--CCEEEEEeCCCC----HHHHHHHHHcCCeEEEecCCCchhhhHHHHHHHHHhcCCCEEEEcC
Confidence 665432 44444322 368887766542 24567888999999887643211 1245777776 799999999
Q ss_pred ec
Q 020794 213 YM 214 (321)
Q Consensus 213 ~~ 214 (321)
|.
T Consensus 89 y~ 90 (279)
T TIGR03590 89 YG 90 (279)
T ss_pred CC
Confidence 85
No 211
>PRK09034 aspartate kinase; Reviewed
Probab=65.41 E-value=59 Score=33.27 Aligned_cols=32 Identities=16% Similarity=0.065 Sum_probs=27.9
Q ss_pred EEEEEEc---CCccchHHHHHHHHHhcCCeEeEee
Q 020794 43 GIHVFHC---PDEVGIVAKLSECIASRGGNILAAD 74 (321)
Q Consensus 43 ~Iltv~G---~Dr~GIVA~VS~~La~~G~NI~d~~ 74 (321)
..+++.+ ++++|+.++|-+.|+++|+||.-+.
T Consensus 309 ~~Itv~~~~~~~~~g~~a~if~~la~~~I~Vd~i~ 343 (454)
T PRK09034 309 TSIYISKYLMNREVGFGRKVLQILEDHGISYEHMP 343 (454)
T ss_pred EEEEEccCCCCCCccHHHHHHHHHHHcCCeEEEEc
Confidence 5677776 6789999999999999999999874
No 212
>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional
Probab=65.03 E-value=25 Score=35.90 Aligned_cols=61 Identities=18% Similarity=0.281 Sum_probs=41.3
Q ss_pred CeeEEEEEeCCc--hhHHHHHHhhhcCCcCeeEEEEEeCCCCCCC-----chHHHHHHHcCCCEEEEc
Q 020794 128 KYKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGPN-----SHVIRFLERHGIPYHYLC 188 (321)
Q Consensus 128 ~~rIavl~S~~g--~~l~~lL~~~~~~~l~~~i~~Vis~~~~~~~-----~~v~~~a~~~gIP~~~~~ 188 (321)
..||+|.+||+. .+|-.+|..++......++.++..||.-.++ ..+.++|+++|||++...
T Consensus 15 ~~~ilvavSGG~DS~~Ll~~l~~~~~~~~~~~l~a~hvnhglr~~s~~~~~~~~~~~~~l~i~~~~~~ 82 (436)
T PRK10660 15 SRQILVAFSGGLDSTVLLHLLVQWRTENPGVTLRAIHVHHGLSPNADSWVKHCEQVCQQWQVPLVVER 82 (436)
T ss_pred CCeEEEEecCCHHHHHHHHHHHHHHHhcCCCeEEEEEEeCCCCcchHHHHHHHHHHHHHcCCcEEEEE
Confidence 468999999974 3555566554422234688888888743232 346778999999998754
No 213
>PRK08210 aspartate kinase I; Reviewed
Probab=64.86 E-value=33 Score=34.19 Aligned_cols=63 Identities=16% Similarity=0.236 Sum_probs=43.6
Q ss_pred CcccEEEEEEcC---CccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHHHHHhh
Q 020794 39 TLTHGIHVFHCP---DEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFN 114 (321)
Q Consensus 39 ~~~~~Iltv~G~---Dr~GIVA~VS~~La~~G~NI~d~~q~~~~l~g~F~Mr~~v~~~~~~~~~~~L~~~L~~la~~lg 114 (321)
.....+++++|. |++|+.+++.+.|+++|+||+...+. +-... +-+ ..+...++++.+-++|.
T Consensus 336 ~~~~a~isvvG~~~~~~~g~~~~i~~aL~~~~I~i~~~~~s----~~~is----~vv-----~~~~~~~a~~~Lh~~f~ 401 (403)
T PRK08210 336 RENCAKVSIVGAGMAGVPGVMAKIVTALSEEGIEILQSADS----HTTIW----VLV-----KEEDMEKAVNALHDAFE 401 (403)
T ss_pred eCCcEEEEEEcCCcCCCccHHHHHHHHHHhCCCCEEEEecC----CCEEE----EEE-----cHHHHHHHHHHHHHHhc
Confidence 345578889996 78999999999999999999864442 22222 222 23456677777777664
No 214
>COG4569 MhpF Acetaldehyde dehydrogenase (acetylating) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=64.11 E-value=25 Score=33.27 Aligned_cols=53 Identities=25% Similarity=0.374 Sum_probs=34.5
Q ss_pred CCeeEEEEEeCCc-hhH-HHHHHhhhcCCcCeeEEEEEeCCCCCCCchHHHHHHHcCCCEEE
Q 020794 127 PKYKVAVLASKQE-HCL-VDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHY 186 (321)
Q Consensus 127 ~~~rIavl~S~~g-~~l-~~lL~~~~~~~l~~~i~~Vis~~~~~~~~~v~~~a~~~gIP~~~ 186 (321)
.|.|+++++||+- +.| ..+| +.|+ +.|....+.-. +++..+.+|.+.|+|+..
T Consensus 3 sk~kvaiigsgni~tdlm~k~l---r~g~-~le~~~mvgid---p~sdglaraarlgv~tt~ 57 (310)
T COG4569 3 SKRKVAIIGSGNIGTDLMIKIL---RHGQ-HLEMAVMVGID---PQSDGLARAARLGVATTH 57 (310)
T ss_pred CcceEEEEccCcccHHHHHHHH---hcCC-cccceeEEccC---CCccHHHHHHhcCCcchh
Confidence 5889999999984 432 2233 3343 34544444332 367889999999999753
No 215
>cd04917 ACT_AKiii-LysC-EC_2 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The second ACT domain (ACT2), this CD, is not involved in the binding of heterotrophic effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=63.71 E-value=53 Score=23.65 Aligned_cols=58 Identities=12% Similarity=0.164 Sum_probs=36.2
Q ss_pred EEEEEEcC---CccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHHHHHh
Q 020794 43 GIHVFHCP---DEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMF 113 (321)
Q Consensus 43 ~Iltv~G~---Dr~GIVA~VS~~La~~G~NI~d~~q~~~~l~g~F~Mr~~v~~~~~~~~~~~L~~~L~~la~~l 113 (321)
.+++++|. +++|+.+++.+.|++ .||.=++|... +- .+.+-++ .+...+++..+-++|
T Consensus 2 alIsvvG~~~~~~~~v~~~i~~~L~~--i~i~~i~~~~s--~~----~is~~V~-----~~~~~~a~~~Lh~~f 62 (64)
T cd04917 2 ALVALIGNDISETAGVEKRIFDALED--INVRMICYGAS--NH----NLCFLVK-----EEDKDEVVQRLHSRL 62 (64)
T ss_pred eEEEEECCCccCCcCHHHHHHHHHHh--CCeEEEEEecC--cc----EEEEEEe-----HHHHHHHHHHHHHHH
Confidence 47889997 789999999999976 55555666422 11 2222232 244566666665544
No 216
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=62.82 E-value=1.2e+02 Score=33.64 Aligned_cols=38 Identities=11% Similarity=0.178 Sum_probs=32.3
Q ss_pred cccEEEEEEcC---CccchHHHHHHHHHhcCCeEeEeeeec
Q 020794 40 LTHGIHVFHCP---DEVGIVAKLSECIASRGGNILAADVFV 77 (321)
Q Consensus 40 ~~~~Iltv~G~---Dr~GIVA~VS~~La~~G~NI~d~~q~~ 77 (321)
.+-.+|++.|. +++|+.+++-+.|+++|+||.-++|..
T Consensus 313 ~dvalIsV~G~gm~~~~G~~arIf~~La~~gI~V~mIsqss 353 (819)
T PRK09436 313 NNMAMFNVSGPGMKGMVGMASRVFAALSRAGISVVLITQSS 353 (819)
T ss_pred CCEEEEEEEcCCCCCCcCHHHHHHHHHHHCCCcEEEEEcCC
Confidence 33457999886 679999999999999999999998863
No 217
>COG0313 Predicted methyltransferases [General function prediction only]
Probab=62.67 E-value=23 Score=34.42 Aligned_cols=74 Identities=18% Similarity=0.258 Sum_probs=46.1
Q ss_pred EEeCCchh----HHHHHHhhhcCCcCeeEEEEEeCCCCC----CCchHHHHHHHcCCCEEEEcCCcchhHHHHHHHhc--
Q 020794 134 LASKQEHC----LVDFLYGWQEGKLPVEITCVISNHDRG----PNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ-- 203 (321)
Q Consensus 134 l~S~~g~~----l~~lL~~~~~~~l~~~i~~Vis~~~~~----~~~~v~~~a~~~gIP~~~~~~~~~~~~~~~~~~l~-- 203 (321)
+.|-..|| ...|+...+.| +-+++||+.--+ |++.+.+.|.++||++..++-. ..-+.++..
T Consensus 55 ~is~h~hne~~~~~~li~~l~~g----~~valVSDAG~P~ISDPG~~LV~~a~~~gi~V~~lPG~----sA~~tAL~~SG 126 (275)
T COG0313 55 LISYHEHNEKEKLPKLIPLLKKG----KSVALVSDAGTPLISDPGYELVRAAREAGIRVVPLPGP----SALITALSASG 126 (275)
T ss_pred eecccCCcHHHHHHHHHHHHhcC----CeEEEEecCCCCcccCccHHHHHHHHHcCCcEEecCCc----cHHHHHHHHcC
Confidence 55665554 45566666666 346677875222 4678899999999999998732 223444443
Q ss_pred -CCCEEEEEeecc
Q 020794 204 -NTDFLVLARYMQ 215 (321)
Q Consensus 204 -~~Dlivlag~~~ 215 (321)
..|=.+..||.-
T Consensus 127 l~~~~F~F~GFLP 139 (275)
T COG0313 127 LPSQRFLFEGFLP 139 (275)
T ss_pred CCCCCeeEeccCC
Confidence 355455667754
No 218
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=62.48 E-value=56 Score=30.34 Aligned_cols=59 Identities=12% Similarity=0.093 Sum_probs=41.4
Q ss_pred CCeeEEEEEeCCchhHHHHHHhhhcCCcCeeEEEEEeCCCCCCCchHHHHHHHcCCCEEEEc
Q 020794 127 PKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC 188 (321)
Q Consensus 127 ~~~rIavl~S~~g~~l~~lL~~~~~~~l~~~i~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~ 188 (321)
..-|+++|+-..-....+++.....+.-+.+|.+|=|.- .+..+..+|..++||...+.
T Consensus 108 ~~~rlalFvkd~C~~C~~~~~~l~a~~~~~Diylvgs~~---dD~~Ir~WA~~~~Idp~~V~ 166 (200)
T TIGR03759 108 GGGRLALFVKDDCVACDARVQRLLADNAPLDLYLVGSQG---DDERIRQWANRHQIDPAKVR 166 (200)
T ss_pred CCCeEEEEeCCCChHHHHHHHHHhcCCCceeEEEecCCC---CHHHHHHHHHHcCCCHHHee
Confidence 457999999754332344455555555578898887543 35689999999999987665
No 219
>PRK15385 magnesium transport protein MgtC; Provisional
Probab=62.47 E-value=78 Score=29.85 Aligned_cols=80 Identities=10% Similarity=-0.034 Sum_probs=55.8
Q ss_pred cccEEEEEEcCCccc--hHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHHHHHhhhcc
Q 020794 40 LTHGIHVFHCPDEVG--IVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMR 117 (321)
Q Consensus 40 ~~~~Iltv~G~Dr~G--IVA~VS~~La~~G~NI~d~~q~~~~l~g~F~Mr~~v~~~~~~~~~~~L~~~L~~la~~lg~~~ 117 (321)
..+|.+++.|.+..+ +-+.+-+.|.+++..+.+++......++..-+.+++..... +..++++-...++.+=|+..
T Consensus 140 ~~~~~~~v~~~~~~~~~vr~~L~~~l~~~~~~~~~l~~~~~~~~~~~ei~a~l~~~~~--~~~~le~iv~~L~~~pgV~~ 217 (225)
T PRK15385 140 EKRYILKVTCNKEDESAVRQWLLNIVKEAAICLQGLGSVPAQEQGYKEIRAELVGHAD--YRKTRELIISRIGDNDNITA 217 (225)
T ss_pred ceEEEEEEEEcCcchhHHHHHHHHHHHhCCCceEEeEeeecCCCCeEEEEEEEEecCC--chhhHHHHHHHHhCCCCeEE
Confidence 346888899988665 57899899999999999998853233566777787776542 44566666666665555544
Q ss_pred ceee
Q 020794 118 SVVR 121 (321)
Q Consensus 118 ~~~r 121 (321)
-.|+
T Consensus 218 v~W~ 221 (225)
T PRK15385 218 IHWS 221 (225)
T ss_pred EEEE
Confidence 4554
No 220
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=62.04 E-value=1.9e+02 Score=29.51 Aligned_cols=145 Identities=12% Similarity=0.145 Sum_probs=79.7
Q ss_pred hcCCeEeE---eeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHHHHHhhhccc---eeeeCCCCCCeeEEEEEeCC
Q 020794 65 SRGGNILA---ADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRS---VVRVPDIDPKYKVAVLASKQ 138 (321)
Q Consensus 65 ~~G~NI~d---~~q~~~~l~g~F~Mr~~v~~~~~~~~~~~L~~~L~~la~~lg~~~~---~~r~~~~~~~~rIavl~S~~ 138 (321)
+.|-.|+- ++-+ +..|.|-+.+. ++.. ....+|..+|+++-+++..+-+ ..+.+...-++||||+.|.+
T Consensus 65 ~~G~~V~v~g~v~~y--~~~G~~ql~v~-~i~~--~G~G~l~~~~~~lk~~L~~eGlfd~~~k~~lP~~p~~i~vits~~ 139 (432)
T TIGR00237 65 QNGQQVLVRGGISVY--EPRGDYQIICF-EMQP--AGEGLLQLAYEQLKEKLAAEGLFDQEYKKPLPHFPKRVGVITSQT 139 (432)
T ss_pred CCCCEEEEEEEEEEE--CCCCcEEEEEE-Eecc--CChHHHHHHHHHHHHHHHHCCCCCchhcCCCCCCCCEEEEEeCCc
Confidence 45555543 4444 45777775543 3332 2578888888888777653222 12234444579999999999
Q ss_pred chhHHHHHHhhhcCCcCeeEEEEEeCCCCCCCc-----hHHHHHHHc-CCCEEEEcCCcch-------hHHHHHHHhcCC
Q 020794 139 EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNS-----HVIRFLERH-GIPYHYLCAKENE-------REEELLELVQNT 205 (321)
Q Consensus 139 g~~l~~lL~~~~~~~l~~~i~~Vis~~~~~~~~-----~v~~~a~~~-gIP~~~~~~~~~~-------~~~~~~~~l~~~ 205 (321)
|..++|++.-++.-...+++. ++...-.+..+ ..++.+.+. .+-+..+..-+.+ +++++.+.+.++
T Consensus 140 ~aa~~D~~~~~~~r~p~~~~~-~~~~~vQG~~a~~~i~~al~~~~~~~~~dviii~RGGGs~eDL~~Fn~e~~~rai~~~ 218 (432)
T TIGR00237 140 GAALADILHILKRRDPSLKVV-IYPTLVQGEGAVQSIVESIELANTKNECDVLIVGRGGGSLEDLWSFNDEKVARAIFLS 218 (432)
T ss_pred cHHHHHHHHHHHhhCCCceEE-EecccccCccHHHHHHHHHHHhhcCCCCCEEEEecCCCCHHHhhhcCcHHHHHHHHcC
Confidence 999999998766543335555 33222222221 223333332 2566666543221 245666666543
Q ss_pred CEEEEEeecc
Q 020794 206 DFLVLARYMQ 215 (321)
Q Consensus 206 Dlivlag~~~ 215 (321)
-+=|+.|-+|
T Consensus 219 ~~Pvis~iGH 228 (432)
T TIGR00237 219 KIPIISAVGH 228 (432)
T ss_pred CCCEEEecCc
Confidence 3333344444
No 221
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=60.69 E-value=19 Score=27.72 Aligned_cols=59 Identities=12% Similarity=0.202 Sum_probs=38.6
Q ss_pred CeeEEEEEeCCchh---HHHHHHhhhcCCcCeeEEEEEeCCC-CCCCchHHHHHHHcCCCEEEEcC
Q 020794 128 KYKVAVLASKQEHC---LVDFLYGWQEGKLPVEITCVISNHD-RGPNSHVIRFLERHGIPYHYLCA 189 (321)
Q Consensus 128 ~~rIavl~S~~g~~---l~~lL~~~~~~~l~~~i~~Vis~~~-~~~~~~v~~~a~~~gIP~~~~~~ 189 (321)
-+||+|-++-.... +.+-|+...... .+++ +++-.. ++.+.-..++|+++|||+..++.
T Consensus 3 g~rVli~GgR~~~D~~~i~~~Ld~~~~~~--~~~~-lvhGga~~GaD~iA~~wA~~~gv~~~~~~a 65 (71)
T PF10686_consen 3 GMRVLITGGRDWTDHELIWAALDKVHARH--PDMV-LVHGGAPKGADRIAARWARERGVPVIRFPA 65 (71)
T ss_pred CCEEEEEECCccccHHHHHHHHHHHHHhC--CCEE-EEECCCCCCHHHHHHHHHHHCCCeeEEeCc
Confidence 47899888776533 455566554432 2333 555443 55566778999999999988763
No 222
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.
Probab=60.41 E-value=57 Score=28.12 Aligned_cols=57 Identities=25% Similarity=0.349 Sum_probs=36.3
Q ss_pred eEEEEEeCCc--hhHHHHHHhhhcCCcCeeEEEEEeCCCCCC-----CchHHHHHHHcCCCEEEE
Q 020794 130 KVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGP-----NSHVIRFLERHGIPYHYL 187 (321)
Q Consensus 130 rIavl~S~~g--~~l~~lL~~~~~~~l~~~i~~Vis~~~~~~-----~~~v~~~a~~~gIP~~~~ 187 (321)
||+|..||+. +.+..++..+... ...++.+|..++.-.. ...+.++|+..|||+..+
T Consensus 1 ~v~v~~SGG~DS~vl~~l~~~~~~~-~~~~v~~v~id~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 64 (185)
T cd01992 1 KILVAVSGGPDSMALLHLLSELKPR-LGLRLVAVHVDHGLRPESDEEAAFVADLCAKLGIPLYIL 64 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHH-cCCcEEEEEecCCCCchHHHHHHHHHHHHHHcCCcEEEE
Confidence 6888889874 3444555443221 1346777766653211 235688999999999987
No 223
>PRK12483 threonine dehydratase; Reviewed
Probab=60.33 E-value=40 Score=35.43 Aligned_cols=40 Identities=13% Similarity=0.143 Sum_probs=33.3
Q ss_pred CCCCcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeec
Q 020794 36 VSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFV 77 (321)
Q Consensus 36 ~~~~~~~~Iltv~G~Dr~GIVA~VS~~La~~G~NI~d~~q~~ 77 (321)
.-.......+.|.=|||||-.+++++.|.+. ||++++...
T Consensus 339 l~~~~r~~~~~v~~~d~pG~l~~~~~~l~~~--ni~~~~~~~ 378 (521)
T PRK12483 339 ELGEQREAIIAVTIPEQPGSFKAFCAALGKR--QITEFNYRY 378 (521)
T ss_pred HHhcCCEEEEEEEeCCCCCHHHHHHHHhhhc--CeEEEEEEe
Confidence 3445666778888899999999999999988 999988763
No 224
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=59.26 E-value=1.9e+02 Score=28.64 Aligned_cols=35 Identities=17% Similarity=0.112 Sum_probs=30.9
Q ss_pred cEEEEEEc---CCccchHHHHHHHHHhcCCeEeEeeee
Q 020794 42 HGIHVFHC---PDEVGIVAKLSECIASRGGNILAADVF 76 (321)
Q Consensus 42 ~~Iltv~G---~Dr~GIVA~VS~~La~~G~NI~d~~q~ 76 (321)
..++++.| ++++|+.+++.+.|+++|+||.-++|.
T Consensus 260 va~vsv~g~~~~~~~g~~~~if~~L~~~~I~i~~i~~~ 297 (401)
T TIGR00656 260 VTRVTVHGLGMLGKRGFLARIFGALAERNINVDLISQT 297 (401)
T ss_pred EEEEEEecCCCCCCccHHHHHHHHHHHcCCcEEEEEcC
Confidence 45788885 578999999999999999999999885
No 225
>PRK09181 aspartate kinase; Validated
Probab=58.50 E-value=49 Score=34.30 Aligned_cols=64 Identities=17% Similarity=0.231 Sum_probs=48.5
Q ss_pred cccEEEEEEcCC--ccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHHHHHhh
Q 020794 40 LTHGIHVFHCPD--EVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFN 114 (321)
Q Consensus 40 ~~~~Iltv~G~D--r~GIVA~VS~~La~~G~NI~d~~q~~~~l~g~F~Mr~~v~~~~~~~~~~~L~~~L~~la~~lg 114 (321)
..-.+|+++|.. ++|+.+++-+.|++.|+||.-++|... + -. +.+-+ +.+..++++..+-++|.
T Consensus 400 ~~~a~VsvVG~gm~~~gv~ak~f~aL~~~~Ini~~i~qg~s--e--~~--Is~vV-----~~~d~~~Av~~lH~~f~ 465 (475)
T PRK09181 400 RKVAIVSAIGSNIAVPGVLAKAVQALAEAGINVLALHQSMR--Q--VN--MQFVV-----DEDDYEKAICALHEALV 465 (475)
T ss_pred CCceEEEEeCCCCCcccHHHHHHHHHHHCCCCeEEEEecCC--c--ce--EEEEE-----eHHHHHHHHHHHHHHHh
Confidence 455789999976 899999999999999999999999632 1 11 22222 34667888999888884
No 226
>PRK11891 aspartate carbamoyltransferase; Provisional
Probab=58.15 E-value=85 Score=32.30 Aligned_cols=27 Identities=11% Similarity=0.144 Sum_probs=21.5
Q ss_pred cccccCChhHHhh-cCCCeEEecCCCCCCC
Q 020794 242 YFNMILSGKFLRS-YGKDVINIHHGLLPSF 270 (321)
Q Consensus 242 ~~~~il~~~~l~~-~~~~~INiHpslLP~y 270 (321)
+-+|.+..++++. .+..+|=+||. |+.
T Consensus 331 ~~~y~vt~ell~~~ak~dai~MHcL--Pr~ 358 (429)
T PRK11891 331 TPDFQINQALVDAVCKPDTLIMHPL--PRD 358 (429)
T ss_pred ccCCcCCHHHHhCccCCCcEEECCC--CCC
Confidence 3457999999998 77789999994 555
No 227
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).
Probab=57.67 E-value=27 Score=30.55 Aligned_cols=58 Identities=21% Similarity=0.301 Sum_probs=37.0
Q ss_pred eEEEEEeCCc--hhHHHHHHhhhcCCcCeeEEEEEeCCCCCC-----CchHHHHHHHcCCCEEEEc
Q 020794 130 KVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGP-----NSHVIRFLERHGIPYHYLC 188 (321)
Q Consensus 130 rIavl~S~~g--~~l~~lL~~~~~~~l~~~i~~Vis~~~~~~-----~~~v~~~a~~~gIP~~~~~ 188 (321)
||+|..||+. +.+..++...... .+.++.+|..++.-.. ...+.++|++.|||+..+.
T Consensus 1 ~v~va~SGG~DS~~ll~ll~~~~~~-~~~~v~~v~vd~g~~~~~~~~~~~~~~~~~~~gi~~~~~~ 65 (189)
T TIGR02432 1 RILVAVSGGVDSMALLHLLLKLQPK-LKIRLIAAHVDHGLRPESDEEAEFVQQFCKKLNIPLEIKK 65 (189)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHH-cCCCEEEEEeCCCCChhHHHHHHHHHHHHHHcCCCEEEEE
Confidence 6888889874 4455555543222 2346777766653211 2467899999999998765
No 228
>PRK07431 aspartate kinase; Provisional
Probab=57.01 E-value=51 Score=34.68 Aligned_cols=86 Identities=15% Similarity=0.042 Sum_probs=51.6
Q ss_pred EEEEEc-CCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHHHHHhhhccceeee
Q 020794 44 IHVFHC-PDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRV 122 (321)
Q Consensus 44 Iltv~G-~Dr~GIVA~VS~~La~~G~NI~d~~q~~~~l~g~F~Mr~~v~~~~~~~~~~~L~~~L~~la~~lg~~~~~~r~ 122 (321)
.+++.+ ++++|+.++|-+.|+++|+||.-++|... .++....-+.+ +. .+.+...+.|+++..+++. -.+
T Consensus 272 ~itl~~~~~~~g~~a~if~~l~~~~I~v~~i~qs~~-~~~~~~isf~i--~~--~d~~~~~~~l~~l~~~~~~----~~i 342 (587)
T PRK07431 272 KVALLRVPDRPGIAAQLFEELAAQGVNVDLIIQSIH-EGNSNDIAFTV--AE--NELKKAEAVAEAIAPALGG----AEV 342 (587)
T ss_pred EEEEecCCCcccHHHHHHHHHHHcCCcEEEEEeccC-CCCCccEEEEE--eH--HHHHHHHHHHHHHHHHcCC----CcE
Confidence 455544 68899999999999999999999998753 23332322223 32 1344444555554444431 112
Q ss_pred CCCCCCeeEEEEEeCC
Q 020794 123 PDIDPKYKVAVLASKQ 138 (321)
Q Consensus 123 ~~~~~~~rIavl~S~~ 138 (321)
...+..-+|.+.+++-
T Consensus 343 ~~~~~~a~IsvvG~gm 358 (587)
T PRK07431 343 LVETNVAKLSISGAGM 358 (587)
T ss_pred EEeCCeEEEEEECCCc
Confidence 2234556788877654
No 229
>PRK06291 aspartate kinase; Provisional
Probab=56.88 E-value=60 Score=33.28 Aligned_cols=64 Identities=14% Similarity=0.117 Sum_probs=46.3
Q ss_pred cccEEEEEEcC---CccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHHHHHhh
Q 020794 40 LTHGIHVFHCP---DEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFN 114 (321)
Q Consensus 40 ~~~~Iltv~G~---Dr~GIVA~VS~~La~~G~NI~d~~q~~~~l~g~F~Mr~~v~~~~~~~~~~~L~~~L~~la~~lg 114 (321)
....+|+++|. +++|+.+++-+.|.+.|+||.-++|... +-. +.+-++ .+...+++..+-++|.
T Consensus 396 ~~~a~IsvvG~gm~~~~gv~~rif~aL~~~~I~v~~isqgsS--e~~----Is~vV~-----~~d~~~av~~Lh~~f~ 462 (465)
T PRK06291 396 KDVCVVAVVGAGMAGTPGVAGRIFSALGESGINIKMISQGSS--EVN----ISFVVD-----EEDGERAVKVLHDEFI 462 (465)
T ss_pred CCEEEEEEEcCCccCCcChHHHHHHHHHHCCCCEEEEEeccc--cCe----EEEEEe-----HHHHHHHHHHHHHHhc
Confidence 34578999997 7999999999999999999999998642 111 222222 3456677777777664
No 230
>cd04914 ACT_AKi-DapG-BS_1 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria, bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and
Probab=56.54 E-value=28 Score=25.91 Aligned_cols=34 Identities=12% Similarity=0.101 Sum_probs=29.2
Q ss_pred EEEEEEcCCc-cchHHHHHHHHHhcCCeEeEeeee
Q 020794 43 GIHVFHCPDE-VGIVAKLSECIASRGGNILAADVF 76 (321)
Q Consensus 43 ~Iltv~G~Dr-~GIVA~VS~~La~~G~NI~d~~q~ 76 (321)
..+||.+... +|..+++-+.|+++|+||-=++++
T Consensus 2 ~~vtv~~~~~~~~~~a~if~~La~~~InvDmI~~~ 36 (67)
T cd04914 2 TQIKVKAKDNENDLQQRVFKALANAGISVDLINVS 36 (67)
T ss_pred eEEEEecCCCCccHHHHHHHHHHHcCCcEEEEEec
Confidence 4578888755 899999999999999999999765
No 231
>COG0482 TrmU Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=55.98 E-value=36 Score=34.23 Aligned_cols=87 Identities=24% Similarity=0.329 Sum_probs=56.6
Q ss_pred CCeeEEEEEeCCc-hhHHH-HHHhhhcCCcCeeEEEEEeCCCC--CC-C-------chHHHHHHHcCCCEEEEc-CCc--
Q 020794 127 PKYKVAVLASKQE-HCLVD-FLYGWQEGKLPVEITCVISNHDR--GP-N-------SHVIRFLERHGIPYHYLC-AKE-- 191 (321)
Q Consensus 127 ~~~rIavl~S~~g-~~l~~-lL~~~~~~~l~~~i~~Vis~~~~--~~-~-------~~v~~~a~~~gIP~~~~~-~~~-- 191 (321)
.++||+|..||.- |.+.+ ||.. +| ++|.+|.-.... +. . ..+.+.|...|||++.++ .++
T Consensus 2 ~~~kV~v~mSGGVDSSVaA~lLk~--QG---yeViGl~m~~~~~~~~~~C~s~~d~~da~~va~~LGIp~~~vdf~~~y~ 76 (356)
T COG0482 2 KKKKVLVGMSGGVDSSVAAYLLKE--QG---YEVIGLFMKNWDEDGGGGCCSEEDLRDAERVADQLGIPLYVVDFEKEFW 76 (356)
T ss_pred CCcEEEEEccCCHHHHHHHHHHHH--cC---CeEEEEEEEeeccCCCCcCCchhHHHHHHHHHHHhCCceEEEchHHHHH
Confidence 4689999999973 55544 4443 34 799988765322 21 1 257899999999999987 211
Q ss_pred -----------------c----h-hH---HHHHHHhc--CCCEEEEEeeccccc
Q 020794 192 -----------------N----E-RE---EELLELVQ--NTDFLVLARYMQPVP 218 (321)
Q Consensus 192 -----------------~----~-~~---~~~~~~l~--~~Dlivlag~~~~~~ 218 (321)
| - ++ ..+++.+. ++|++.+..|-+..|
T Consensus 77 ~~V~~~f~~~Y~~G~TPNPci~CN~~iKF~~~l~~a~~lgad~iATGHYar~~~ 130 (356)
T COG0482 77 NKVFEYFLAEYKAGKTPNPCILCNKEIKFKALLDYAKELGADYIATGHYARQRE 130 (356)
T ss_pred HHHHHHHHHHHhCCCCCCcchhcCHHHHHHHHHHHHHHcCCCeEEEeeeEeeec
Confidence 0 0 11 23444332 799999999998554
No 232
>PRK09224 threonine dehydratase; Reviewed
Probab=55.95 E-value=46 Score=34.61 Aligned_cols=68 Identities=13% Similarity=0.163 Sum_probs=43.0
Q ss_pred CCCcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccC-CCCeEEEEEEEEeCCCCCChHHHHHHHHH
Q 020794 37 SPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPE-KKNVFYSRSEFIFDPIKWPREQMDEDFFK 108 (321)
Q Consensus 37 ~~~~~~~Iltv~G~Dr~GIVA~VS~~La~~G~NI~d~~q~~~~-l~g~F~Mr~~v~~~~~~~~~~~L~~~L~~ 108 (321)
-.......+.|.=|||||-.+++.+.|. +.||++.+..-.. ..+..++. ++.++...+.+++.+.|++
T Consensus 323 ~~~~re~~l~v~iPerPGaL~~f~~~l~--~~nItef~yr~~~~~~a~V~vg--ie~~~~~~~~~~i~~~L~~ 391 (504)
T PRK09224 323 LGEQREALLAVTIPEEPGSFLKFCELLG--GRNVTEFNYRYADAKEAHIFVG--VQLSRGQEERAEIIAQLRA 391 (504)
T ss_pred HhcCCEEEEEEEeCCCCCHHHHHHHHhc--cCcEEEEEEEecCCCeEEEEEE--EEeCChhhHHHHHHHHHHH
Confidence 3455567788888999999999999998 7999998875321 12222222 3343211125566666654
No 233
>PRK14664 tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=55.50 E-value=40 Score=33.81 Aligned_cols=57 Identities=19% Similarity=0.003 Sum_probs=38.5
Q ss_pred CCeeEEEEEeCCc-h-hHHHHHHhhhcCCcCeeEEEEEeCCCCCCCchHHHHHHHcCCCEEEEc
Q 020794 127 PKYKVAVLASKQE-H-CLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC 188 (321)
Q Consensus 127 ~~~rIavl~S~~g-~-~l~~lL~~~~~~~l~~~i~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~ 188 (321)
+..||+|..||.- | .+..+|.. . ..++.+|..+........+.++|+++|||++.++
T Consensus 4 ~~~kVlVa~SGGvDSsv~a~lL~~--~---G~eV~av~~~~~~~e~~~a~~va~~LGI~~~vvd 62 (362)
T PRK14664 4 SKKRVLVGMSGGIDSTATCLMLQE--Q---GYEIVGVTMRVWGDEPQDARELAARMGIEHYVAD 62 (362)
T ss_pred CCCEEEEEEeCCHHHHHHHHHHHH--c---CCcEEEEEecCcchhHHHHHHHHHHhCCCEEEEe
Confidence 4469999999973 4 33444442 2 3678877766422122467899999999998876
No 234
>PRK00143 mnmA tRNA-specific 2-thiouridylase MnmA; Reviewed
Probab=55.43 E-value=95 Score=30.62 Aligned_cols=55 Identities=20% Similarity=0.148 Sum_probs=36.0
Q ss_pred eeEEEEEeCCc-h-hHHHHHHhhhcCCcCeeEEEEEeCCCCC-------------CCchHHHHHHHcCCCEEEEc
Q 020794 129 YKVAVLASKQE-H-CLVDFLYGWQEGKLPVEITCVISNHDRG-------------PNSHVIRFLERHGIPYHYLC 188 (321)
Q Consensus 129 ~rIavl~S~~g-~-~l~~lL~~~~~~~l~~~i~~Vis~~~~~-------------~~~~v~~~a~~~gIP~~~~~ 188 (321)
+||+|..||.- | .+..+|.. .| .++.++..+.... ....+.++|++.|||++.++
T Consensus 1 ~kVlValSGGvDSsvla~lL~~--~G---~~V~~v~~~~~~~~~~~~~~~~~s~~d~~~a~~~a~~LgIp~~vvd 70 (346)
T PRK00143 1 KRVVVGMSGGVDSSVAAALLKE--QG---YEVIGVFMKLWDDDDETGKGGCCAEEDIADARRVADKLGIPHYVVD 70 (346)
T ss_pred CeEEEEecCCHHHHHHHHHHHH--cC---CcEEEEEEeCCCcccccccCCcCcHHHHHHHHHHHHHcCCcEEEEe
Confidence 48999999974 3 44445543 23 5677776654211 01357889999999999876
No 235
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=55.28 E-value=75 Score=31.47 Aligned_cols=34 Identities=18% Similarity=0.209 Sum_probs=21.7
Q ss_pred CeeEEEEEeCC-chhHHHHHHhhhcCCcCeeEEEEEeCC
Q 020794 128 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNH 165 (321)
Q Consensus 128 ~~rIavl~S~~-g~~l~~lL~~~~~~~l~~~i~~Vis~~ 165 (321)
++||++++.|. |.... ..++.. ...++++|++.+
T Consensus 3 kIRVgIVG~GnIGr~~a---~al~~~-pd~ELVgV~dr~ 37 (324)
T TIGR01921 3 KIRAAIVGYGNLGRSVE---KAIQQQ-PDMELVGVFSRR 37 (324)
T ss_pred CcEEEEEeecHHHHHHH---HHHHhC-CCcEEEEEEcCC
Confidence 58999999987 43322 222211 247999998765
No 236
>TIGR00657 asp_kinases aspartate kinase. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.
Probab=55.12 E-value=51 Score=33.31 Aligned_cols=37 Identities=19% Similarity=0.148 Sum_probs=31.6
Q ss_pred CcccEEEEEEcC---CccchHHHHHHHHHhcCCeEeEeee
Q 020794 39 TLTHGIHVFHCP---DEVGIVAKLSECIASRGGNILAADV 75 (321)
Q Consensus 39 ~~~~~Iltv~G~---Dr~GIVA~VS~~La~~G~NI~d~~q 75 (321)
.....+++++|. +++|+++++.+.|+++|+||.-+.+
T Consensus 375 ~~~~a~VsvvG~~~~~~~g~~a~if~~La~~~Inv~~i~~ 414 (441)
T TIGR00657 375 EKGLAKVSLVGAGMKSAPGVASKIFEALAQNGINIEMISS 414 (441)
T ss_pred cCCeEEEEEEcCCCCCCCchHHHHHHHHHHCCCCEEEEEe
Confidence 344567999875 7899999999999999999998875
No 237
>PRK13600 putative ribosomal protein L7Ae-like; Provisional
Probab=54.96 E-value=20 Score=28.69 Aligned_cols=45 Identities=11% Similarity=0.196 Sum_probs=28.3
Q ss_pred HHHHHhhhcCCcCeeEEEEEeCCCCCCCchHHHHHHHcCCCEEEEcC
Q 020794 143 VDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCA 189 (321)
Q Consensus 143 ~~lL~~~~~~~l~~~i~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~~ 189 (321)
++.+++++.|. ...+.+-.+-+..--.++...|+++|||+.+++.
T Consensus 19 kqt~Kai~kg~--~~~v~iA~Da~~~vv~~l~~lceek~Ip~v~V~s 63 (84)
T PRK13600 19 KETLKALKKDQ--VTSLIIAEDVEVYLMTRVLSQINQKNIPVSFFKS 63 (84)
T ss_pred HHHHHHHhcCC--ceEEEEeCCCCHHHHHHHHHHHHHcCCCEEEECC
Confidence 44556666664 3444333333211125789999999999999985
No 238
>PRK00907 hypothetical protein; Provisional
Probab=54.90 E-value=90 Score=25.36 Aligned_cols=66 Identities=20% Similarity=0.191 Sum_probs=47.5
Q ss_pred cEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeee-ccCCCCeEE-EEEEEEeCCCCCChHHHHHHHHHHHH
Q 020794 42 HGIHVFHCPDEVGIVAKLSECIASRGGNILAADVF-VPEKKNVFY-SRSEFIFDPIKWPREQMDEDFFKLSK 111 (321)
Q Consensus 42 ~~Iltv~G~Dr~GIVA~VS~~La~~G~NI~d~~q~-~~~l~g~F~-Mr~~v~~~~~~~~~~~L~~~L~~la~ 111 (321)
.+-+.|+|.++++..+.|-..+..|.-+.-+.+.. -.+.+|.|. ..+.+.+. +.++|.+-.++|.+
T Consensus 17 ~fpiKVmG~a~~~l~~~V~~vv~~h~p~~~~~~i~~r~Ss~GkY~Svtv~i~at----s~eQld~iY~~L~~ 84 (92)
T PRK00907 17 TFELSAMGTAERGLETELPRLLAATGVELLQERISWKHSSSGKYVSVRIGFRAE----SREQYDAAHQALRD 84 (92)
T ss_pred CCeEEEEEcCchhHHHHHHHHHHHhCCCCCcCcEEeccCCCCEEEEEEEEEEEC----CHHHHHHHHHHHhh
Confidence 46799999999999999999999987755433222 124578887 55556554 46777777777654
No 239
>PLN02317 arogenate dehydratase
Probab=54.65 E-value=68 Score=32.57 Aligned_cols=34 Identities=18% Similarity=0.146 Sum_probs=28.5
Q ss_pred ccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeee
Q 020794 41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVF 76 (321)
Q Consensus 41 ~~~Iltv~G~Dr~GIVA~VS~~La~~G~NI~d~~q~ 76 (321)
+..++++ +|+||...++=+.++.+|+|+..+...
T Consensus 284 TSivfsl--~~~pG~L~k~L~~Fa~~~INLtkIESR 317 (382)
T PLN02317 284 TSIVFSL--EEGPGVLFKALAVFALRDINLTKIESR 317 (382)
T ss_pred EEEEEEc--CCCCchHHHHHHHHHHCCCCEEEEEee
Confidence 3345555 889999999999999999999998765
No 240
>PLN02550 threonine dehydratase
Probab=54.21 E-value=42 Score=35.89 Aligned_cols=40 Identities=15% Similarity=0.142 Sum_probs=33.1
Q ss_pred CCCCcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeec
Q 020794 36 VSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFV 77 (321)
Q Consensus 36 ~~~~~~~~Iltv~G~Dr~GIVA~VS~~La~~G~NI~d~~q~~ 77 (321)
.-.....+.+.+.=|||||-.+++++.|.+. ||++++..-
T Consensus 411 ~~~~~r~~~~~v~ipd~pG~l~~~~~~l~~~--ni~~~~~~~ 450 (591)
T PLN02550 411 DVGRQQEAVLATFMPEEPGSFKRFCELVGPM--NITEFKYRY 450 (591)
T ss_pred HhccCCEEEEEEEcCCCCCHHHHHHHHhhhh--cceEEEEEe
Confidence 3445566788888899999999999999986 999987753
No 241
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=54.11 E-value=48 Score=28.71 Aligned_cols=62 Identities=13% Similarity=0.101 Sum_probs=45.6
Q ss_pred cEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHHH
Q 020794 42 HGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLS 110 (321)
Q Consensus 42 ~~Iltv~G~Dr~GIVA~VS~~La~~G~NI~d~~q~~~~l~g~F~Mr~~v~~~~~~~~~~~L~~~L~~la 110 (321)
+-|+.|--+|+||=...+...|-++++|+--+-.|+.+.+. + .+.+... +.+...++|++.+
T Consensus 69 ~dVlaVEmeD~PG~l~~I~~vl~d~diNldYiYAFv~ek~K--A-lli~r~e----d~d~~~~aLed~g 130 (142)
T COG4747 69 TDVLAVEMEDVPGGLSRIAEVLGDADINLDYIYAFVTEKQK--A-LLIVRVE----DIDRAIKALEDAG 130 (142)
T ss_pred eeEEEEEecCCCCcHHHHHHHHhhcCcCceeeeeeeecCce--E-EEEEEhh----HHHHHHHHHHHcC
Confidence 35788888999999999999999999999999888764321 1 3333332 4666677777554
No 242
>PLN02551 aspartokinase
Probab=53.69 E-value=67 Score=33.76 Aligned_cols=64 Identities=14% Similarity=0.114 Sum_probs=46.6
Q ss_pred CcccEEEEEEcC--CccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHHHHHh
Q 020794 39 TLTHGIHVFHCP--DEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMF 113 (321)
Q Consensus 39 ~~~~~Iltv~G~--Dr~GIVA~VS~~La~~G~NI~d~~q~~~~l~g~F~Mr~~v~~~~~~~~~~~L~~~L~~la~~l 113 (321)
.....+|+++|. .++|+.+++-+.|+++|+||.-++|... + - .+-+-+ +.+...+++..+-++|
T Consensus 442 ~~~vAiISvVG~~~~~~gvaariF~aLa~~gInV~mIsqgaS--e--i--nIS~vV-----~~~d~~~Av~aLH~~F 507 (521)
T PLN02551 442 LQGRSIISLIGNVQRSSLILEKVFRVLRTNGVNVQMISQGAS--K--V--NISLIV-----NDDEAEQCVRALHSAF 507 (521)
T ss_pred eCCEEEEEEEccCCCCccHHHHHHHHHHHCCCCeEEEEecCC--C--c--EEEEEE-----eHHHHHHHHHHHHHHH
Confidence 345678999986 6899999999999999999999998632 1 1 222222 2355677777777777
No 243
>PRK14561 hypothetical protein; Provisional
Probab=53.56 E-value=28 Score=31.37 Aligned_cols=54 Identities=20% Similarity=0.160 Sum_probs=32.6
Q ss_pred eeEEEEEeCCc-h-hHHHHHHhhhcCCcCeeEEEEEeCCC-CCCCchHHHHHHHcCCCEEEEc
Q 020794 129 YKVAVLASKQE-H-CLVDFLYGWQEGKLPVEITCVISNHD-RGPNSHVIRFLERHGIPYHYLC 188 (321)
Q Consensus 129 ~rIavl~S~~g-~-~l~~lL~~~~~~~l~~~i~~Vis~~~-~~~~~~v~~~a~~~gIP~~~~~ 188 (321)
|||+|+.||.- | .+..++... .++.++..+.. ......+.+.|++.|+|...+.
T Consensus 1 mkV~ValSGG~DSslll~~l~~~------~~v~a~t~~~g~~~e~~~a~~~a~~lGi~~~~v~ 57 (194)
T PRK14561 1 MKAGVLFSGGKDSSLAAILLERF------YDVELVTVNFGVLDSWKHAREAAKALGFPHRVLE 57 (194)
T ss_pred CEEEEEEechHHHHHHHHHHHhc------CCeEEEEEecCchhHHHHHHHHHHHhCCCEEEEE
Confidence 68999999973 3 333344321 23443322221 1122467889999999999876
No 244
>TIGR00512 salvage_mtnA S-methyl-5-thioribose-1-phosphate isomerase. The delineation of this family was based in part on a discussion and neighbor-joining phylogenetic study, by Kyrpides and Woese, of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. This clade is now recognized to include the methionine salvage pathway enzyme MtnA.
Probab=53.19 E-value=1.2e+02 Score=30.03 Aligned_cols=72 Identities=15% Similarity=0.182 Sum_probs=39.1
Q ss_pred eEEEEE---------eCCchhHHHHHHhhhcCCcCeeEEEEEe-CCCCCCCchH-HHHHHHcCCCEEEEcCCcchhHHHH
Q 020794 130 KVAVLA---------SKQEHCLVDFLYGWQEGKLPVEITCVIS-NHDRGPNSHV-IRFLERHGIPYHYLCAKENEREEEL 198 (321)
Q Consensus 130 rIavl~---------S~~g~~l~~lL~~~~~~~l~~~i~~Vis-~~~~~~~~~v-~~~a~~~gIP~~~~~~~~~~~~~~~ 198 (321)
|+.||. ++.|+.+..|..++++|+ .+..+++ .++...+... .....+.|||+.+++. ..+
T Consensus 147 ~~~ILThcnsg~lat~~~gtal~~l~~A~~~g~---~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~D------sav 217 (331)
T TIGR00512 147 PLRVLTHCNTGSLATAGYGTALGVIRSAHEKGR---LEHVYADETRPRLQGARLTAWELVQEGIPATLITD------SMA 217 (331)
T ss_pred CceEEeecCCccccccccchHHHHHHHHHHcCC---ceEEEECCCCchhhHHHHHHHHHHHCCCCEEEEcc------cHH
Confidence 666776 233566666666666664 2332333 2322222222 3456788999998863 123
Q ss_pred HHHhc--CCCEEEE
Q 020794 199 LELVQ--NTDFLVL 210 (321)
Q Consensus 199 ~~~l~--~~Dlivl 210 (321)
..++. ++|.+++
T Consensus 218 ~~~m~~~~vd~Viv 231 (331)
T TIGR00512 218 AHLMKHGEVDAVIV 231 (331)
T ss_pred HHHhcccCCCEEEE
Confidence 44444 6777765
No 245
>PRK09034 aspartate kinase; Reviewed
Probab=52.62 E-value=77 Score=32.44 Aligned_cols=66 Identities=17% Similarity=0.152 Sum_probs=47.4
Q ss_pred CCCcccEEEEEEcC---CccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHHHHHh
Q 020794 37 SPTLTHGIHVFHCP---DEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMF 113 (321)
Q Consensus 37 ~~~~~~~Iltv~G~---Dr~GIVA~VS~~La~~G~NI~d~~q~~~~l~g~F~Mr~~v~~~~~~~~~~~L~~~L~~la~~l 113 (321)
.-..+..+|+++|. +++|+.+++-+.|+++|+||.-++|... + ..+.+-++ .++..+++..+-++|
T Consensus 380 ~~~~~va~VsivG~g~~~~~gv~arif~aL~~~~InV~mIsq~~S--e----~~Is~vV~-----~~d~~~av~~LH~~f 448 (454)
T PRK09034 380 EIEHDLAIIMVVGEGMRQTVGVAAKITKALAEANINIQMINQGSS--E----ISIMFGVK-----NEDAEKAVKAIYNAF 448 (454)
T ss_pred EEeCCEEEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecCC--c----ceEEEEEc-----HHHHHHHHHHHHHHH
Confidence 33445678999885 7899999999999999999999988532 2 23333343 355666677776666
No 246
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=52.12 E-value=21 Score=30.50 Aligned_cols=36 Identities=19% Similarity=0.293 Sum_probs=23.8
Q ss_pred CCCCeeEEEEEeCC-chhHHHHHHhhhcCCcCeeEEEEEeCC
Q 020794 125 IDPKYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNH 165 (321)
Q Consensus 125 ~~~~~rIavl~S~~-g~~l~~lL~~~~~~~l~~~i~~Vis~~ 165 (321)
...++||+|++.|+ |.+|...|.. .| ++|.+|.+..
T Consensus 7 ~~~~l~I~iIGaGrVG~~La~aL~~--ag---~~v~~v~srs 43 (127)
T PF10727_consen 7 QAARLKIGIIGAGRVGTALARALAR--AG---HEVVGVYSRS 43 (127)
T ss_dssp -----EEEEECTSCCCCHHHHHHHH--TT---SEEEEESSCH
T ss_pred CCCccEEEEECCCHHHHHHHHHHHH--CC---CeEEEEEeCC
Confidence 34689999999998 7888877764 34 6888877643
No 247
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=51.92 E-value=58 Score=35.17 Aligned_cols=78 Identities=9% Similarity=0.145 Sum_probs=51.2
Q ss_pred CCeeEEEEEeCC-ch-hHHHHHHhhhcCCcCeeEEEEEeCCCCCCCc----hHHHHHHHc--CCCEEEEcCCcchhHHHH
Q 020794 127 PKYKVAVLASKQ-EH-CLVDFLYGWQEGKLPVEITCVISNHDRGPNS----HVIRFLERH--GIPYHYLCAKENEREEEL 198 (321)
Q Consensus 127 ~~~rIavl~S~~-g~-~l~~lL~~~~~~~l~~~i~~Vis~~~~~~~~----~v~~~a~~~--gIP~~~~~~~~~~~~~~~ 198 (321)
+..||+|+|+|. ++ ++..|+. .| ..+|.+|+++.. ..+. .+.+.|++. +|++..++. ...+.+
T Consensus 128 R~akVlVlG~Gg~~s~lv~sL~~---sG--~~~I~~vd~D~v-~SNlnRIgEl~e~A~~~n~~v~v~~i~~---~~~~dl 198 (637)
T TIGR03693 128 RNAKILAAGSGDFLTKLVRSLID---SG--FPRFHAIVTDAE-EHALDRIHELAEIAEETDDALLVQEIDF---AEDQHL 198 (637)
T ss_pred hcccEEEEecCchHHHHHHHHHh---cC--CCcEEEEecccc-chhhhHHHHHHHHHHHhCCCCceEeccC---CcchhH
Confidence 567999999998 44 4555554 34 367777877764 2221 235666663 477777653 234578
Q ss_pred HHHhcCCCEEEEEee
Q 020794 199 LELVQNTDFLVLARY 213 (321)
Q Consensus 199 ~~~l~~~Dlivlag~ 213 (321)
.+.++..|+|+++.=
T Consensus 199 ~ev~~~~DiVi~vsD 213 (637)
T TIGR03693 199 HEAFEPADWVLYVSD 213 (637)
T ss_pred HHhhcCCcEEEEECC
Confidence 888888999987754
No 248
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=51.89 E-value=88 Score=28.24 Aligned_cols=84 Identities=14% Similarity=0.190 Sum_probs=42.4
Q ss_pred eEEEEEeCC--c--hhHHHHHHhhhcCCcCeeEEEEEeCCCCCC-CchHHHHHHHcCCCEEEEcCCcchhH--HHHHHHh
Q 020794 130 KVAVLASKQ--E--HCLVDFLYGWQEGKLPVEITCVISNHDRGP-NSHVIRFLERHGIPYHYLCAKENERE--EELLELV 202 (321)
Q Consensus 130 rIavl~S~~--g--~~l~~lL~~~~~~~l~~~i~~Vis~~~~~~-~~~v~~~a~~~gIP~~~~~~~~~~~~--~~~~~~l 202 (321)
||.+|+-.+ | +.+..|-.+.+.. +..|..|-++..|.. -..+..+|+..|||++......+..+ .+.++..
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~ 79 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLK--GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKF 79 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHH
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhc--cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHH
Confidence 444444343 3 3444444443333 467776666654421 13678889999999886542211111 1222222
Q ss_pred c--CCCEEEEEeecc
Q 020794 203 Q--NTDFLVLARYMQ 215 (321)
Q Consensus 203 ~--~~Dlivlag~~~ 215 (321)
. +.|+|++-.-++
T Consensus 80 ~~~~~D~vlIDT~Gr 94 (196)
T PF00448_consen 80 RKKGYDLVLIDTAGR 94 (196)
T ss_dssp HHTTSSEEEEEE-SS
T ss_pred hhcCCCEEEEecCCc
Confidence 2 588887765554
No 249
>COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only]
Probab=51.27 E-value=44 Score=35.35 Aligned_cols=60 Identities=18% Similarity=0.275 Sum_probs=41.2
Q ss_pred CeeEEEEEeCCCCCCCchHHHHHHHcCCCEEEEc-CCc---------------chhHHHHHHHhcCCCEEEEEeecc
Q 020794 155 PVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC-AKE---------------NEREEELLELVQNTDFLVLARYMQ 215 (321)
Q Consensus 155 ~~~i~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~-~~~---------------~~~~~~~~~~l~~~Dlivlag~~~ 215 (321)
|+-++....++-. -.....+++.+.++|+...+ -|. ...++++.+.++.+|+|+.+|-+-
T Consensus 212 p~ILad~~~~r~~-~~~~~~~l~~~t~~p~~~~pmGKg~idEs~P~y~GvY~G~~s~~~vre~vE~aD~il~iG~~l 287 (557)
T COG3961 212 PVILADALVSRFG-LEKELKKLINATGFPVATLPMGKGVIDESHPNYLGVYNGKLSEPEVREAVESADLILTIGVLL 287 (557)
T ss_pred cEEecchhhhhhh-hHHHHHHHHHhcCCCeEEeecccccccccCCCeeeEEecccCCHHHHHHhhcCCEEEEeceEE
Confidence 4545555554421 13456889999999999876 231 123478888888999999998864
No 250
>PRK10126 tyrosine phosphatase; Provisional
Probab=51.07 E-value=68 Score=27.41 Aligned_cols=81 Identities=16% Similarity=0.201 Sum_probs=43.5
Q ss_pred CeeEEEEEeCCc--hhH-HHHHHhhhcCCcCeeEEEEEeCCCCCCCchHHHHHHHcCCCEEEEcCCcchhHHHHHHHhcC
Q 020794 128 KYKVAVLASKQE--HCL-VDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQN 204 (321)
Q Consensus 128 ~~rIavl~S~~g--~~l-~~lL~~~~~~~l~~~i~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~~~~~l~~ 204 (321)
++||.|+..|+- |.+ ++++.... +.+.+.=+++.....++.+....+.++++||+......+ .. +++ .++.
T Consensus 2 ~~~iLFVC~gN~cRSpmAEa~~~~~~-~~~~v~SAG~~~~~g~~~~~~a~~~l~~~Gid~~~h~sr-~l-t~~---~~~~ 75 (147)
T PRK10126 2 FNNILVVCVGNICRSPTAERLLQRYH-PELKVESAGLGALVGKGADPTAISVAAEHQLSLEGHCAR-QI-SRR---LCRN 75 (147)
T ss_pred CCeEEEEcCCcHhHHHHHHHHHHHhc-CCeEEEeeeccCCCCCCCCHHHHHHHHHcCCCcCCCccc-cC-CHH---Hhcc
Confidence 368888777763 334 45666532 222233344432222234667889999999996321111 01 112 2337
Q ss_pred CCEEEEEeec
Q 020794 205 TDFLVLARYM 214 (321)
Q Consensus 205 ~Dlivlag~~ 214 (321)
+|+|++..-.
T Consensus 76 ~DlIl~Md~~ 85 (147)
T PRK10126 76 YDLILTMEKR 85 (147)
T ss_pred CCEEEECCHH
Confidence 9999876433
No 251
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=50.92 E-value=65 Score=30.36 Aligned_cols=69 Identities=12% Similarity=0.215 Sum_probs=37.7
Q ss_pred eeEEEEEeCC-chhHHHHHHhhhcCCcCeeEEEEEeCCCCCCCchHHHHHHHcCCCEEEEcCCcchhHHHHHHHhcCCCE
Q 020794 129 YKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDF 207 (321)
Q Consensus 129 ~rIavl~S~~-g~~l~~lL~~~~~~~l~~~i~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~~~~~l~~~Dl 207 (321)
+||+|+|.|. |.. +...+.+.....++++|+. ++ .....++++..+++.+ . .-++++ .++|+
T Consensus 2 mrIgIIG~G~iG~~---ia~~l~~~~~~~elv~v~d-~~---~~~a~~~a~~~~~~~~--~-----~~~ell---~~~Dv 64 (265)
T PRK13304 2 LKIGIVGCGAIASL---ITKAILSGRINAELYAFYD-RN---LEKAENLASKTGAKAC--L-----SIDELV---EDVDL 64 (265)
T ss_pred CEEEEECccHHHHH---HHHHHHcCCCCeEEEEEEC-CC---HHHHHHHHHhcCCeeE--C-----CHHHHh---cCCCE
Confidence 6999999875 332 2233223222467776654 32 2245566777776543 1 112333 47888
Q ss_pred EEEEeec
Q 020794 208 LVLARYM 214 (321)
Q Consensus 208 ivlag~~ 214 (321)
++.+...
T Consensus 65 Vvi~a~~ 71 (265)
T PRK13304 65 VVECASV 71 (265)
T ss_pred EEEcCCh
Confidence 8877543
No 252
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=50.87 E-value=40 Score=35.05 Aligned_cols=40 Identities=15% Similarity=0.167 Sum_probs=33.7
Q ss_pred CCCCCcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeee
Q 020794 35 SVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVF 76 (321)
Q Consensus 35 ~~~~~~~~~Iltv~G~Dr~GIVA~VS~~La~~G~NI~d~~q~ 76 (321)
+.-.+...+.+.|.=|||||-.+++++.|.+ .||++.+..
T Consensus 318 ~~~~~~re~~l~V~iPerPGal~~f~~~i~~--~nItef~yr 357 (499)
T TIGR01124 318 CELGEQREALLAVTIPEQPGSFLKFCELLGN--RNITEFNYR 357 (499)
T ss_pred HHHhcCCEEEEEEEeCCCCCHHHHHHHHhhh--cceEEEEEE
Confidence 4445667788888899999999999999997 699998876
No 253
>PRK14449 acylphosphatase; Provisional
Probab=50.61 E-value=75 Score=25.27 Aligned_cols=58 Identities=12% Similarity=0.079 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHhhhccceeeeCCCCCCeeEEEEEeCCchhHHHHHHhhhcCCcCeeEEEEEe
Q 020794 102 MDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVIS 163 (321)
Q Consensus 102 L~~~L~~la~~lg~~~~~~r~~~~~~~~rIavl~S~~g~~l~~lL~~~~~~~l~~~i~~Vis 163 (321)
++--...+|.++|+.-|-.+..+. .|-+.+.|+...++++++.++++...+.|..|-.
T Consensus 18 FR~fv~~~A~~lgl~G~V~N~~dG----~Vei~~~G~~~~v~~f~~~l~~~~~~a~V~~i~~ 75 (90)
T PRK14449 18 LRYSVYQKAVSLGITGYAENLYDG----SVEVVAEGDEENIKELINFIKTGLRWARVDNVEE 75 (90)
T ss_pred hHHHHHHHHHHcCCEEEEEECCCC----eEEEEEEeCHHHHHHHHHHHhhCCCceEEEEEEE
Confidence 455667788899987764433332 6888889998999999999988865577766543
No 254
>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]
Probab=50.42 E-value=1.7e+02 Score=30.18 Aligned_cols=86 Identities=13% Similarity=0.067 Sum_probs=50.9
Q ss_pred cccEEEEEEcCC---ccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHHHHHhhhc
Q 020794 40 LTHGIHVFHCPD---EVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAM 116 (321)
Q Consensus 40 ~~~~Iltv~G~D---r~GIVA~VS~~La~~G~NI~d~~q~~~~l~g~F~Mr~~v~~~~~~~~~~~L~~~L~~la~~lg~~ 116 (321)
.....+++.|.- ++|..++|-+.|.++|+|+.-+.|...+.. +.+..+.. +.....+.|.+...+..
T Consensus 305 ~~~~~i~v~~~~~~~~~g~~a~vf~~l~~~~i~v~~I~q~~~~~~------i~~~v~~~--~~~~a~~~l~~~~~~~~-- 374 (447)
T COG0527 305 DNVALITVSGPGMNGMVGFAARVFGILAEAGINVDLITQSISEVS------ISFTVPES--DAPRALRALLEEKLELL-- 374 (447)
T ss_pred CCeEEEEEEccCccccccHHHHHHHHHHHcCCcEEEEEeccCCCe------EEEEEchh--hHHHHHHHHHHHHhhhc--
Confidence 455678888764 458999999999999999999988754221 34444432 23333333333322110
Q ss_pred cceeeeCCCCCCeeEEEEEeCC
Q 020794 117 RSVVRVPDIDPKYKVAVLASKQ 138 (321)
Q Consensus 117 ~~~~r~~~~~~~~rIavl~S~~ 138 (321)
. ++.....--+|++.+.|-
T Consensus 375 ~---~v~~~~~~a~vsiVG~gm 393 (447)
T COG0527 375 A---EVEVEEGLALVSIVGAGM 393 (447)
T ss_pred c---eEEeeCCeeEEEEEcccc
Confidence 0 122233446788877664
No 255
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=50.16 E-value=2.9e+02 Score=27.92 Aligned_cols=145 Identities=14% Similarity=0.149 Sum_probs=74.9
Q ss_pred hcCCeEeE---eeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHHHHHhhhccc---eeeeCCCCCCeeEEEEEeCC
Q 020794 65 SRGGNILA---ADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRS---VVRVPDIDPKYKVAVLASKQ 138 (321)
Q Consensus 65 ~~G~NI~d---~~q~~~~l~g~F~Mr~~v~~~~~~~~~~~L~~~L~~la~~lg~~~~---~~r~~~~~~~~rIavl~S~~ 138 (321)
+.|-.|+= ++-+ +..|.|-+.+. ++... ...+|...++++-+++.-+.+ ..+.+...-++||||+.|.+
T Consensus 71 ~~G~~v~v~g~~~~y--~~~g~~ql~v~-~i~~~--g~G~l~~~~~~lk~~L~~eGlfd~~~k~~lP~~p~~I~viTs~~ 145 (438)
T PRK00286 71 EEGMKVLVRGKVSLY--EPRGDYQLIVE-EIEPA--GIGALAAAFEQLKEKLAAEGLFDPERKKPLPFFPKRIGVITSPT 145 (438)
T ss_pred CCCCEEEEEEEEEEE--CCCCCEEEEEE-EeeeC--CccHHHHHHHHHHHHHHHCCCCChhhcCCCCCCCCEEEEEeCCc
Confidence 44444443 3334 44777775443 33222 346777777777666543221 12233344478999999999
Q ss_pred chhHHHHHHhhhcCCcCeeEEEEEeCCCCCCCc-----hHHHHHHHcCCCEEEEcCCcch-------hHHHHHHHhcCCC
Q 020794 139 EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNS-----HVIRFLERHGIPYHYLCAKENE-------REEELLELVQNTD 206 (321)
Q Consensus 139 g~~l~~lL~~~~~~~l~~~i~~Vis~~~~~~~~-----~v~~~a~~~gIP~~~~~~~~~~-------~~~~~~~~l~~~D 206 (321)
|..++|++...+.-...+++. ++...-.+.++ ..++.+.+.+.-+..+..-+.+ +++++.+.+.++.
T Consensus 146 gAa~~D~~~~~~~r~p~~~~~-~~~~~vQG~~A~~~i~~al~~~~~~~~Dviii~RGGGS~eDL~~Fn~e~v~~ai~~~~ 224 (438)
T PRK00286 146 GAAIRDILTVLRRRFPLVEVI-IYPTLVQGEGAAASIVAAIERANARGEDVLIVARGGGSLEDLWAFNDEAVARAIAASR 224 (438)
T ss_pred cHHHHHHHHHHHhcCCCCeEE-EecCcCcCccHHHHHHHHHHHhcCCCCCEEEEecCCCCHHHhhccCcHHHHHHHHcCC
Confidence 999999998766543224544 22222222221 2233333333456666543221 3456666664333
Q ss_pred EEEEEeecc
Q 020794 207 FLVLARYMQ 215 (321)
Q Consensus 207 livlag~~~ 215 (321)
+=|+.|-+|
T Consensus 225 ~Pvis~IGH 233 (438)
T PRK00286 225 IPVISAVGH 233 (438)
T ss_pred CCEEEeccC
Confidence 323333444
No 256
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=49.97 E-value=55 Score=29.67 Aligned_cols=69 Identities=17% Similarity=0.233 Sum_probs=34.5
Q ss_pred CeeEEEEEeCC-chhH-HHHHHhhhcCCcCeeEEEEEeCCCCCCCchHHHHHHHcCCCEEEEcCCcchhHHHHHHHhcCC
Q 020794 128 KYKVAVLASKQ-EHCL-VDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNT 205 (321)
Q Consensus 128 ~~rIavl~S~~-g~~l-~~lL~~~~~~~l~~~i~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~~~~~l~~~ 205 (321)
.+||+|+|+|. |+.+ ..++. .+..+.+. .++.++.+ .....+++++.++... .. ..+.++++
T Consensus 4 ~~kI~iIG~G~mg~ala~~l~~---~~~~~~~~-i~~~~~~~--~~~~~~~~~~~~~~~~--~~--------~~~~~~~~ 67 (245)
T PRK07634 4 KHRILFIGAGRMAEAIFSGLLK---TSKEYIEE-IIVSNRSN--VEKLDQLQARYNVSTT--TD--------WKQHVTSV 67 (245)
T ss_pred CCeEEEECcCHHHHHHHHHHHh---CCCCCcCe-EEEECCCC--HHHHHHHHHHcCcEEe--CC--------hHHHHhcC
Confidence 47999999886 3433 23332 23222221 22344321 1245566666776432 11 12233478
Q ss_pred CEEEEEe
Q 020794 206 DFLVLAR 212 (321)
Q Consensus 206 Dlivlag 212 (321)
|+++++-
T Consensus 68 DiViiav 74 (245)
T PRK07634 68 DTIVLAM 74 (245)
T ss_pred CEEEEec
Confidence 9998873
No 257
>KOG2805 consensus tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=49.71 E-value=61 Score=32.46 Aligned_cols=57 Identities=19% Similarity=0.191 Sum_probs=38.3
Q ss_pred CCeeEEEEEeCCc-hhHHH-HHHhhhcCCcCeeEEEEEeCCCC----C-CC-------chHHHHHHHcCCCEEEEc
Q 020794 127 PKYKVAVLASKQE-HCLVD-FLYGWQEGKLPVEITCVISNHDR----G-PN-------SHVIRFLERHGIPYHYLC 188 (321)
Q Consensus 127 ~~~rIavl~S~~g-~~l~~-lL~~~~~~~l~~~i~~Vis~~~~----~-~~-------~~v~~~a~~~gIP~~~~~ 188 (321)
+..||+|..||.- +...+ ||.+ +| .++.+|+...=+ . +. ..+.+.|++.+||++.+.
T Consensus 4 ~~~~VvvamSgGVDSsVaa~Ll~~--~g---~~v~gv~M~nWd~~de~~s~cp~e~D~~da~~Vc~~LnI~~~~Vn 74 (377)
T KOG2805|consen 4 KPDRVVVAMSGGVDSSVAARLLAA--RG---YNVTGVFMKNWDSLDEFGSQCPAERDWKDAKRVCKQLNIPLHQVN 74 (377)
T ss_pred ccceEEEEecCCchHHHHHHHHHh--cC---CCeeEEeeeccccccccccCCCchhhHHHHHHHHHHhCCeeEEEe
Confidence 4578999999873 44444 5543 34 678888765311 1 11 357889999999999875
No 258
>TIGR00657 asp_kinases aspartate kinase. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.
Probab=49.22 E-value=2.6e+02 Score=28.22 Aligned_cols=38 Identities=13% Similarity=0.031 Sum_probs=31.8
Q ss_pred cccEEEEEEcCCc--cchHHHHHHHHHhcCCeEeEeeeec
Q 020794 40 LTHGIHVFHCPDE--VGIVAKLSECIASRGGNILAADVFV 77 (321)
Q Consensus 40 ~~~~Iltv~G~Dr--~GIVA~VS~~La~~G~NI~d~~q~~ 77 (321)
.....+++.|.+- +|+.+++.+.|+++|+||.-+.|..
T Consensus 300 ~~v~~Isv~g~~~~~~g~la~if~~L~~~~I~I~~i~q~~ 339 (441)
T TIGR00657 300 RNQARVTVSGLGMKGPGFLARVFGALAEAGINVDLITQSS 339 (441)
T ss_pred CCEEEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecC
Confidence 3456788888665 5999999999999999999998853
No 259
>COG0394 Wzb Protein-tyrosine-phosphatase [Signal transduction mechanisms]
Probab=49.10 E-value=44 Score=28.80 Aligned_cols=79 Identities=18% Similarity=0.189 Sum_probs=45.2
Q ss_pred CeeEEEEEeCCc--hhH-HHHHHhhhcCCcCeeE--EEEEeCCCCCCCchHHHHHHHcCCCEEEEcCCcchhHHHHHHHh
Q 020794 128 KYKVAVLASKQE--HCL-VDFLYGWQEGKLPVEI--TCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELV 202 (321)
Q Consensus 128 ~~rIavl~S~~g--~~l-~~lL~~~~~~~l~~~i--~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~~~~~l 202 (321)
++||.|+..|+. |.+ ++++...... ..+| +++-..+..+.+...++.++++||++--...+ .+.+..
T Consensus 2 ~~kVLFVC~gN~cRSpmAE~l~~~~~~~--~~~v~SAGt~~~~g~~~~~~a~~vl~e~Gid~~~~~~k------~i~~~~ 73 (139)
T COG0394 2 MMKVLFVCTGNICRSPMAEALLRHLAPD--NVEVDSAGTGGHPGEPPDPRAVEVLAEHGIDISGHRSK------QLTEED 73 (139)
T ss_pred CceEEEEcCCCcccCHHHHHHHHHhccC--CeEEECCccCCCCCCCCCHHHHHHHHHcCCCcCCccCc------cCchhh
Confidence 579999998884 444 5566654332 2343 23322222224567889999999997632111 111212
Q ss_pred -cCCCEEEEEeec
Q 020794 203 -QNTDFLVLARYM 214 (321)
Q Consensus 203 -~~~Dlivlag~~ 214 (321)
.+.|+||...-.
T Consensus 74 ~~~~DlIitmd~~ 86 (139)
T COG0394 74 FDEFDLIITMDES 86 (139)
T ss_pred hhhCCEEEEeChH
Confidence 279999877533
No 260
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=49.05 E-value=31 Score=27.15 Aligned_cols=50 Identities=14% Similarity=0.228 Sum_probs=29.0
Q ss_pred EEeCCchhHHHHHHhhhcCCcCeeEEEEEeCCCCCCCchHHHHHHHcCCCEEEEcC
Q 020794 134 LASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCA 189 (321)
Q Consensus 134 l~S~~g~~l~~lL~~~~~~~l~~~i~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~~ 189 (321)
+.+|....+++ +++|+ +..+.+-.|-+...-..+..+|++++||+..++.
T Consensus 12 l~~G~~~v~ka----i~~gk--aklViiA~D~~~~~~~~i~~~c~~~~Vp~~~~~s 61 (82)
T PRK13602 12 IVIGTKQTVKA----LKRGS--VKEVVVAEDADPRLTEKVEALANEKGVPVSKVDS 61 (82)
T ss_pred EEEcHHHHHHH----HHcCC--eeEEEEECCCCHHHHHHHHHHHHHcCCCEEEECC
Confidence 34454444444 44453 4555444443221124678889999999998863
No 261
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=48.94 E-value=93 Score=25.28 Aligned_cols=55 Identities=13% Similarity=0.220 Sum_probs=36.2
Q ss_pred CeeEEEEEeCCchh--HHHHHHhhhcCCcCeeEEEEEeCCCCCCCchHHHHHHHcCCCEEEEcCC
Q 020794 128 KYKVAVLASKQEHC--LVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAK 190 (321)
Q Consensus 128 ~~rIavl~S~~g~~--l~~lL~~~~~~~l~~~i~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~~~ 190 (321)
+.=++|++|.+|.. +...++..++. .+.+++ +|+. .++.++|.++|+++..++..
T Consensus 43 ~~dl~I~iS~SG~t~e~i~~~~~a~~~--g~~iI~-IT~~-----~~l~~~~~~~~~~~~~~p~~ 99 (119)
T cd05017 43 RKTLVIAVSYSGNTEETLSAVEQAKER--GAKIVA-ITSG-----GKLLEMAREHGVPVIIIPKG 99 (119)
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHC--CCEEEE-EeCC-----chHHHHHHHcCCcEEECCCC
Confidence 44588889988853 44455555444 255554 4432 25888999999999988753
No 262
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=48.78 E-value=99 Score=26.58 Aligned_cols=52 Identities=12% Similarity=0.132 Sum_probs=28.6
Q ss_pred EEEEEeCC--chhHHHHHHhhhcCCcCeeEEEEEeCCCCCCCchHHHHHHHcCCCEEEEc
Q 020794 131 VAVLASKQ--EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC 188 (321)
Q Consensus 131 Iavl~S~~--g~~l~~lL~~~~~~~l~~~i~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~ 188 (321)
|++|+|-. |.+--+++.+ ..-..+|+++..++. -..+.+.|++++.++..+.
T Consensus 1 i~ILGsTGSIG~qtLdVi~~---~~d~f~v~~Lsa~~n---~~~L~~q~~~f~p~~v~i~ 54 (129)
T PF02670_consen 1 IAILGSTGSIGTQTLDVIRK---HPDKFEVVALSAGSN---IEKLAEQAREFKPKYVVIA 54 (129)
T ss_dssp EEEESTTSHHHHHHHHHHHH---CTTTEEEEEEEESST---HHHHHHHHHHHT-SEEEES
T ss_pred CEEEcCCcHHHHHHHHHHHh---CCCceEEEEEEcCCC---HHHHHHHHHHhCCCEEEEc
Confidence 45666543 2333334443 222477777776542 2356677777777776664
No 263
>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form. The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PubMed:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered.
Probab=48.23 E-value=1.4e+02 Score=30.97 Aligned_cols=65 Identities=14% Similarity=0.105 Sum_probs=41.1
Q ss_pred ccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccC-CCCeEEEEEEEEeCCCCCChHHHHHHHHHHHH
Q 020794 41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPE-KKNVFYSRSEFIFDPIKWPREQMDEDFFKLSK 111 (321)
Q Consensus 41 ~~~Iltv~G~Dr~GIVA~VS~~La~~G~NI~d~~q~~~~-l~g~F~Mr~~v~~~~~~~~~~~L~~~L~~la~ 111 (321)
...++++ +|++|-.+.|=+.++++|+|++.+...-.. ..+.|.-.+.++.. . + +.+.+.|+.+.+
T Consensus 17 TSLiFsL--~d~pGaL~~vL~vFa~~gINLthIESRPsk~~~~eY~FFVD~eg~--~-~-~~v~~aL~~Lk~ 82 (436)
T TIGR01268 17 TSLIFSL--KEEAGALAETLKLFQAHDVNLTHIESRPSKTHPGEYEFFVEFDEA--S-D-RKLEGVIEHLRQ 82 (436)
T ss_pred EEEEEEc--CCCCcHHHHHHHHHHHCCCCeeEEecccCCCCCccEEEEEEEecC--c-c-HHHHHHHHHHHH
Confidence 3444554 999999999999999999999998776321 12223323333321 1 2 556666666644
No 264
>PF00708 Acylphosphatase: Acylphosphatase; InterPro: IPR001792 Acylphosphatase (3.6.1.7 from EC) is an enzyme of approximately 98 amino acid residues that specifically catalyses the hydrolysis of the carboxyl-phosphate bond of acylphosphates [], its substrates including 1,3-diphosphoglycerate and carbamyl phosphate []. The enzyme has a mainly beta-sheet structure with 2 short alpha-helical segments. It is distributed in a tissue-specific manner in a wide variety of species, although its physiological role is as yet unknown []: it may, however, play a part in the regulation of the glycolytic pathway and pyrimidine biosynthesis []. There are two known isozymes. One seems to be specific to muscular tissues, the other, called 'organ-common type', is found in many different tissues. While bacterial and archebacterial hypothetical proteins that are highly similar to that enzyme and that probably possess the same activity. These proteins include: Escherichia coli putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (gene yccX). Bacillus subtilis putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (gene yflL). Archaeoglobus fulgidus putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (O29440 from SWISSPROT). An acylphosphatase-like domain is also found in some prokaryotic hydrogenase maturation HypF carbamoyltransferases [, ].; PDB: 1APS_A 1GXT_A 1GXU_A 2HLT_A 2FHM_A 2HLU_A 3BR8_A 1ULR_A 3TRG_A 2BJD_A ....
Probab=48.12 E-value=70 Score=25.06 Aligned_cols=58 Identities=17% Similarity=0.242 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHhhhccceeeeCCCCCCeeEEEEEeCCchhHHHHHHhhhcCCcCeeEEEEEe
Q 020794 102 MDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVIS 163 (321)
Q Consensus 102 L~~~L~~la~~lg~~~~~~r~~~~~~~~rIavl~S~~g~~l~~lL~~~~~~~l~~~i~~Vis 163 (321)
++.-...+|.++|+.-|..+..+ . +|-+.+.|....+..+++.++.|..++.|.-+-.
T Consensus 19 FR~~v~~~A~~~gl~G~V~N~~d--g--~V~i~~~G~~~~l~~f~~~l~~g~p~a~V~~i~~ 76 (91)
T PF00708_consen 19 FRPFVKRIARKLGLTGWVRNLPD--G--SVEIEAEGEEEQLEEFIKWLKKGPPPARVDEIEV 76 (91)
T ss_dssp HHHHHHHHHHHTT-EEEEEE-TT--S--EEEEEEEEEHHHHHHHHHHHHHSSTTSEEEEEEE
T ss_pred hhHHHHHHHHHhCCceEEEECCC--C--EEEEEEEeCHHHHHHHHHHHHhCCCCcEEEEEEE
Confidence 56777788999998776443333 2 7888888888889999999999876677765543
No 265
>PLN02891 IMP cyclohydrolase
Probab=47.59 E-value=27 Score=36.89 Aligned_cols=42 Identities=17% Similarity=0.173 Sum_probs=34.3
Q ss_pred ccCCCCCCcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeee
Q 020794 32 IESSVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVF 76 (321)
Q Consensus 32 ~~~~~~~~~~~~Iltv~G~Dr~GIVA~VS~~La~~G~NI~d~~q~ 76 (321)
..||||+..++++|+| .|+.||+ .+++.|.++|..|+...=|
T Consensus 14 ~~~~~~~~~krALISV--sDKtgi~-~fAk~L~~~gveIiSTgGT 55 (547)
T PLN02891 14 PQSSPSSGKKQALISL--SDKTDLA-LLANGLQELGYTIVSTGGT 55 (547)
T ss_pred ccCCCCccccEEEEEE--ecccCHH-HHHHHHHHCCCEEEEcchH
Confidence 3577888899999999 5999986 5688999999999986443
No 266
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=47.35 E-value=88 Score=30.08 Aligned_cols=66 Identities=23% Similarity=0.166 Sum_probs=36.5
Q ss_pred CCeeEEEEEeCC-chhHHHHHHhhhcCCcCeeEEEEEeCCCCCCCchHHHHHHHcCCCEEEEcCCcchhHHHHHHHhcCC
Q 020794 127 PKYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNT 205 (321)
Q Consensus 127 ~~~rIavl~S~~-g~~l~~lL~~~~~~~l~~~i~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~~~~~l~~~ 205 (321)
..+|++|++.|. |..+...|.+ +.++|. |+ ++. ..-.+.++..|..... .+++.+.+.++
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~-----~Ga~V~-v~-~r~----~~~~~~~~~~G~~~~~--------~~~l~~~l~~a 211 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKA-----LGANVT-VG-ARK----SAHLARITEMGLSPFH--------LSELAEEVGKI 211 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHH-----CCCEEE-EE-ECC----HHHHHHHHHcCCeeec--------HHHHHHHhCCC
Confidence 457999999765 2333333332 235554 33 331 1235667777754322 12455566689
Q ss_pred CEEEEE
Q 020794 206 DFLVLA 211 (321)
Q Consensus 206 Dlivla 211 (321)
|++|.+
T Consensus 212 DiVI~t 217 (296)
T PRK08306 212 DIIFNT 217 (296)
T ss_pred CEEEEC
Confidence 999875
No 267
>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric. This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=46.67 E-value=1.2e+02 Score=31.64 Aligned_cols=67 Identities=15% Similarity=-0.018 Sum_probs=42.1
Q ss_pred cccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEE-EEEEEEeCCCCCChHHHHHHHHHHHHH
Q 020794 40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFY-SRSEFIFDPIKWPREQMDEDFFKLSKM 112 (321)
Q Consensus 40 ~~~~Iltv~G~Dr~GIVA~VS~~La~~G~NI~d~~q~~~~l~g~F~-Mr~~v~~~~~~~~~~~L~~~L~~la~~ 112 (321)
...+++++ +|++|-.+.+=+.++++|+|++.+...-.. .+.+- ..+.+++.. ....+++.|+.+.+.
T Consensus 31 ktSLIFsL--~d~pGaL~~vL~vFa~~gINLThIESRPsk-~~~~e~Y~FfVD~Eg---~~~~l~~aL~~Lk~~ 98 (464)
T TIGR01270 31 RLSIIFSL--SNVVGDLSKAIAIFQDRHINILHLESRDSK-DGTSKTMDVLVDVEL---FHYGLQEAMDLLKSG 98 (464)
T ss_pred eEEEEEEC--CCCchHHHHHHHHHHHCCCCEEEEECCcCC-CCCCccEEEEEEEEc---CHHHHHHHHHHHHHh
Confidence 33444554 899999999999999999999998776321 12221 222233322 235677777766543
No 268
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=46.53 E-value=2.4e+02 Score=26.00 Aligned_cols=112 Identities=13% Similarity=0.153 Sum_probs=70.2
Q ss_pred cCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHHHHHhhhccceeeeCCCCCC
Q 020794 49 CPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRVPDIDPK 128 (321)
Q Consensus 49 G~Dr~GIVA~VS~~La~~G~NI~d~~q~~~~l~g~F~Mr~~v~~~~~~~~~~~L~~~L~~la~~lg~~~~~~r~~~~~~~ 128 (321)
=.+.+--...+.+.|.+.|+..+|++.+.. + -.+.++++.+++. .
T Consensus 11 r~~~~~~a~~ia~al~~gGi~~iEit~~tp---------------~-------a~~~I~~l~~~~~-------------~ 55 (201)
T PRK06015 11 LIDDVEHAVPLARALAAGGLPAIEITLRTP---------------A-------ALDAIRAVAAEVE-------------E 55 (201)
T ss_pred EcCCHHHHHHHHHHHHHCCCCEEEEeCCCc---------------c-------HHHHHHHHHHHCC-------------C
Confidence 344555667789999999999999977532 1 1234444444431 1
Q ss_pred eeEEEEEeCCchhHHHHHHhhhcCCcCeeEEEEEeCCCCCCCchHHHHHHHcCCCEEEEcCCcchhHHHHHHHhc-CCCE
Q 020794 129 YKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ-NTDF 207 (321)
Q Consensus 129 ~rIavl~S~~g~~l~~lL~~~~~~~l~~~i~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~~~~~l~-~~Dl 207 (321)
+.++.|+-.+.++.-+....|- .+++|.. -+..+.++|+++|||+..-. ....|+.+.++ .+|+
T Consensus 56 ---~~vGAGTVl~~e~a~~ai~aGA-----~FivSP~---~~~~vi~~a~~~~i~~iPG~----~TptEi~~A~~~Ga~~ 120 (201)
T PRK06015 56 ---AIVGAGTILNAKQFEDAAKAGS-----RFIVSPG---TTQELLAAANDSDVPLLPGA----ATPSEVMALREEGYTV 120 (201)
T ss_pred ---CEEeeEeCcCHHHHHHHHHcCC-----CEEECCC---CCHHHHHHHHHcCCCEeCCC----CCHHHHHHHHHCCCCE
Confidence 3355565555566555555552 4566665 35689999999999987532 12236666666 7888
Q ss_pred EEE
Q 020794 208 LVL 210 (321)
Q Consensus 208 ivl 210 (321)
+=+
T Consensus 121 vK~ 123 (201)
T PRK06015 121 LKF 123 (201)
T ss_pred EEE
Confidence 744
No 269
>PRK02047 hypothetical protein; Provisional
Probab=46.11 E-value=1.3e+02 Score=24.09 Aligned_cols=65 Identities=9% Similarity=0.011 Sum_probs=47.8
Q ss_pred cEEEEEEcCCccchHHHHHHHHHhcCCeEeE--eeeeccCCCCeEE-EEEEEEeCCCCCChHHHHHHHHHHHH
Q 020794 42 HGIHVFHCPDEVGIVAKLSECIASRGGNILA--ADVFVPEKKNVFY-SRSEFIFDPIKWPREQMDEDFFKLSK 111 (321)
Q Consensus 42 ~~Iltv~G~Dr~GIVA~VS~~La~~G~NI~d--~~q~~~~l~g~F~-Mr~~v~~~~~~~~~~~L~~~L~~la~ 111 (321)
.+-+.++|++.++..++|-..+..+...+.+ ++.. .+.+|.|. ..+.+.+. +.+++.+-+++|.+
T Consensus 16 ~~~~KvIG~~~~~~~~~v~~iv~~~~~~~~~~~i~~k-~Ss~GkY~Svtv~v~v~----s~eq~~~iY~~L~~ 83 (91)
T PRK02047 16 DFPIKVMGKAHPEFADTIFKVVSVHDPEFDLEKIEER-PSSGGNYTGLTITVRAT----SREQLDNIYRALTG 83 (91)
T ss_pred CCeEEEEEeCcHhHHHHHHHHHHHhCCCCccCceEEc-cCCCCeEEEEEEEEEEC----CHHHHHHHHHHHhh
Confidence 4778999999999999999999998776544 2222 25578887 55555554 46888888877765
No 270
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=45.74 E-value=26 Score=29.12 Aligned_cols=44 Identities=16% Similarity=0.154 Sum_probs=30.8
Q ss_pred chHHHHHHHcCCCEEEEcC-Ccc-----h---------hHHHHHHHhcCCCEEEEEeec
Q 020794 171 SHVIRFLERHGIPYHYLCA-KEN-----E---------REEELLELVQNTDFLVLARYM 214 (321)
Q Consensus 171 ~~v~~~a~~~gIP~~~~~~-~~~-----~---------~~~~~~~~l~~~Dlivlag~~ 214 (321)
..+.++|++.|+|+..... +.. . ......++++++|++++.|..
T Consensus 29 ~~l~~lae~~~~Pv~~t~~~kg~i~~~hp~~~G~~g~~~~~~~~~~l~~aDlvl~iG~~ 87 (137)
T PF00205_consen 29 EELRELAEKLGIPVATTPMGKGVIPEDHPLFLGYLGLFGSPAANEALEQADLVLAIGTR 87 (137)
T ss_dssp HHHHHHHHHHTSEEEEEGGGTTSSTTTSTTEEEESCGGSCHHHHHHHHHSSEEEEESSS
T ss_pred HHHHHHHHHHCCCEEecCccccccCCCCchhcccCCccCCHHHHHHhcCCCEEEEECCC
Confidence 4678999999999986542 210 0 124556666799999999964
No 271
>PRK03868 glucose-6-phosphate isomerase; Provisional
Probab=45.54 E-value=76 Score=32.26 Aligned_cols=59 Identities=10% Similarity=0.090 Sum_probs=36.6
Q ss_pred CCeeEEEEEeCCchhHHHHH------HhhhcCCcCeeEEEEEeCCCCCCCchHHHHHHHcCCCEEEEcC
Q 020794 127 PKYKVAVLASKQEHCLVDFL------YGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCA 189 (321)
Q Consensus 127 ~~~rIavl~S~~g~~l~~lL------~~~~~~~l~~~i~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~~ 189 (321)
++.-+.|.+|++|+..+.+. +..+.+.-......++|++ +.++.++|+++|++++.++.
T Consensus 110 ~~~TlviviSKSGtT~ETl~~~~~~~~~~~~~~~~~~~~v~vTd~----~s~L~~~a~~~g~~~f~ip~ 174 (410)
T PRK03868 110 LENTLFIVISKSGTTIETISIFKYLLSHFKLDQELKKNFLFITDP----DSKLEQFAKENNIKCFNIPK 174 (410)
T ss_pred CCcEEEEEEeCCCCCHHHHHHHHHHHHHhccccccccEEEEEecC----CchHHHhHHhcCCcEEecCC
Confidence 34567788899996544332 2221110123344466664 34699999999999988774
No 272
>PRK00341 hypothetical protein; Provisional
Probab=45.24 E-value=1.5e+02 Score=23.91 Aligned_cols=65 Identities=8% Similarity=0.025 Sum_probs=46.7
Q ss_pred cEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeee-ccCCCCeEE-EEEEEEeCCCCCChHHHHHHHHHHHH
Q 020794 42 HGIHVFHCPDEVGIVAKLSECIASRGGNILAADVF-VPEKKNVFY-SRSEFIFDPIKWPREQMDEDFFKLSK 111 (321)
Q Consensus 42 ~~Iltv~G~Dr~GIVA~VS~~La~~G~NI~d~~q~-~~~l~g~F~-Mr~~v~~~~~~~~~~~L~~~L~~la~ 111 (321)
.+-+.|+|.+.++..+.|-..+.++. ...+...+ -.+.+|.|. ..+.+.+. +.+++.+-+++|.+
T Consensus 17 ~~~~KViG~~~~~~~~~V~~iv~~~~-~~~~~~~~~k~Ss~GkY~S~tv~i~~~----s~~q~~~iy~~L~~ 83 (91)
T PRK00341 17 DYPIKVIGDTGVGFKDLVIEILQKHA-DVDLSTLAERQSSNGKYTTVQLHIVAT----DEDQLQDINSALRA 83 (91)
T ss_pred CccEEEEEcCchhHHHHHHHHHHHhC-CCcccceeeccCCCCEEEEEEEEEEEC----CHHHHHHHHHHHhh
Confidence 36689999999999999999998776 55443222 235688887 55556554 46788887777654
No 273
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=45.07 E-value=1.6e+02 Score=28.00 Aligned_cols=79 Identities=10% Similarity=0.121 Sum_probs=43.9
Q ss_pred eeEEEEEeCCchh---HHHHHHhhhcCCcCeeEEEEEeCCCCCCCchHHHHHHHcCCCEEEEcCCc----ch--h---H-
Q 020794 129 YKVAVLASKQEHC---LVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKE----NE--R---E- 195 (321)
Q Consensus 129 ~rIavl~S~~g~~---l~~lL~~~~~~~l~~~i~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~~~~----~~--~---~- 195 (321)
|||.+.+.|.|.- +.+|...+++. .+++..+. .... ...+..+++|++++.++... +. + .
T Consensus 2 ~~i~i~~~g~gG~~~~~~~la~~L~~~--g~ev~vv~-~~~~----~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~ 74 (357)
T PRK00726 2 KKILLAGGGTGGHVFPALALAEELKKR--GWEVLYLG-TARG----MEARLVPKAGIEFHFIPSGGLRRKGSLANLKAPF 74 (357)
T ss_pred cEEEEEcCcchHhhhHHHHHHHHHHhC--CCEEEEEE-CCCc----hhhhccccCCCcEEEEeccCcCCCChHHHHHHHH
Confidence 7888887666522 23566655433 37877554 3321 12344455799998876311 10 0 0
Q ss_pred ------HHHHHHhc--CCCEEEEEeec
Q 020794 196 ------EELLELVQ--NTDFLVLARYM 214 (321)
Q Consensus 196 ------~~~~~~l~--~~Dlivlag~~ 214 (321)
..+.++++ ++|++++.++.
T Consensus 75 ~~~~~~~~~~~~ik~~~pDvv~~~~~~ 101 (357)
T PRK00726 75 KLLKGVLQARKILKRFKPDVVVGFGGY 101 (357)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEECCCc
Confidence 13344454 69999987643
No 274
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=44.79 E-value=2.6e+02 Score=25.84 Aligned_cols=115 Identities=16% Similarity=0.156 Sum_probs=70.5
Q ss_pred EEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHHHHHhhhccceeeeCCC
Q 020794 46 VFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRVPDI 125 (321)
Q Consensus 46 tv~G~Dr~GIVA~VS~~La~~G~NI~d~~q~~~~l~g~F~Mr~~v~~~~~~~~~~~L~~~L~~la~~lg~~~~~~r~~~~ 125 (321)
-|.=.+.+--...+.+.|.+.|+..++++.+.+ . -.+.++++.+++.
T Consensus 12 aVlr~~~~e~a~~~~~al~~~Gi~~iEit~~t~-------------------~---a~~~i~~l~~~~~----------- 58 (204)
T TIGR01182 12 PVIRIDDVDDALPLAKALIEGGLRVLEVTLRTP-------------------V---ALDAIRLLRKEVP----------- 58 (204)
T ss_pred EEEecCCHHHHHHHHHHHHHcCCCEEEEeCCCc-------------------c---HHHHHHHHHHHCC-----------
Confidence 333344555667889999999999999977431 1 1233444444331
Q ss_pred CCCeeEEEEEeCCchhHHHHHHhhhcCCcCeeEEEEEeCCCCCCCchHHHHHHHcCCCEEEEcCCcchhHHHHHHHhc-C
Q 020794 126 DPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ-N 204 (321)
Q Consensus 126 ~~~~rIavl~S~~g~~l~~lL~~~~~~~l~~~i~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~~~~~l~-~ 204 (321)
+ +.++-|+-...++.-+....| + .+++|.. .+..+.++|+++|||+..-. ....|+.+.++ .
T Consensus 59 ----~-~~vGAGTVl~~~~a~~a~~aG---A--~FivsP~---~~~~v~~~~~~~~i~~iPG~----~TptEi~~A~~~G 121 (204)
T TIGR01182 59 ----D-ALIGAGTVLNPEQLRQAVDAG---A--QFIVSPG---LTPELAKHAQDHGIPIIPGV----ATPSEIMLALELG 121 (204)
T ss_pred ----C-CEEEEEeCCCHHHHHHHHHcC---C--CEEECCC---CCHHHHHHHHHcCCcEECCC----CCHHHHHHHHHCC
Confidence 1 335555555555555555555 3 3456665 35689999999999988532 12346666665 7
Q ss_pred CCEEEE
Q 020794 205 TDFLVL 210 (321)
Q Consensus 205 ~Dlivl 210 (321)
+|++=+
T Consensus 122 a~~vKl 127 (204)
T TIGR01182 122 ITALKL 127 (204)
T ss_pred CCEEEE
Confidence 888744
No 275
>PRK06683 hypothetical protein; Provisional
Probab=44.78 E-value=34 Score=27.02 Aligned_cols=50 Identities=18% Similarity=0.253 Sum_probs=30.4
Q ss_pred EEeCCchhHHHHHHhhhcCCcCeeEEEEEeCCCCCCCchHHHHHHHcCCCEEEEcC
Q 020794 134 LASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCA 189 (321)
Q Consensus 134 l~S~~g~~l~~lL~~~~~~~l~~~i~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~~ 189 (321)
+++|....++++ ++|+ +..+.|-.|-+......+...|+.++||+..++.
T Consensus 12 ~v~G~~~v~kai----k~gk--aklViiA~Da~~~~~~~i~~~~~~~~Vpv~~~~t 61 (82)
T PRK06683 12 VVVGHKRTLEAI----KNGI--VKEVVIAEDADMRLTHVIIRTALQHNIPITKVES 61 (82)
T ss_pred EEEcHHHHHHHH----HcCC--eeEEEEECCCCHHHHHHHHHHHHhcCCCEEEECC
Confidence 345555555544 4453 5555555544322234678889999999998763
No 276
>PRK14423 acylphosphatase; Provisional
Probab=44.38 E-value=85 Score=25.08 Aligned_cols=58 Identities=10% Similarity=0.018 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHhhhccceeeeCCCCCCeeEEEEEeCCchhHHHHHHhhhcCCcCeeEEEEEe
Q 020794 102 MDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVIS 163 (321)
Q Consensus 102 L~~~L~~la~~lg~~~~~~r~~~~~~~~rIavl~S~~g~~l~~lL~~~~~~~l~~~i~~Vis 163 (321)
++--...+|.++|+.-|-.+..+ -+|-+.+.|+...++.+++.++++...+.|..|-.
T Consensus 20 FR~~v~~~A~~lgl~G~V~N~~d----G~Vei~~~G~~~~i~~f~~~l~~gp~~a~V~~v~~ 77 (92)
T PRK14423 20 YRASTRDTARELGVDGWVRNLDD----GRVEAVFEGPRDAVEAMVEWCHEGSPAAVVEDVEV 77 (92)
T ss_pred ehHHHHHHHHHcCCEEEEEECCC----CeEEEEEEECHHHHHHHHHHHHhCCCceEEEEEEE
Confidence 34556778889998776544432 35667788888889999999887765677776643
No 277
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=44.34 E-value=2.5e+02 Score=25.69 Aligned_cols=117 Identities=17% Similarity=0.191 Sum_probs=68.9
Q ss_pred EEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHHHHHhhhccceeeeC
Q 020794 44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRVP 123 (321)
Q Consensus 44 Iltv~G~Dr~GIVA~VS~~La~~G~NI~d~~q~~~~l~g~F~Mr~~v~~~~~~~~~~~L~~~L~~la~~lg~~~~~~r~~ 123 (321)
++-|.=.+.+--..++++.|.+.|+.++|++.... +. .+.++.+.+++.
T Consensus 10 iiaVir~~~~~~a~~~~~al~~gGi~~iEiT~~t~-------------------~a---~~~I~~l~~~~p--------- 58 (196)
T PF01081_consen 10 IIAVIRGDDPEDAVPIAEALIEGGIRAIEITLRTP-------------------NA---LEAIEALRKEFP--------- 58 (196)
T ss_dssp EEEEETTSSGGGHHHHHHHHHHTT--EEEEETTST-------------------TH---HHHHHHHHHHHT---------
T ss_pred EEEEEEcCCHHHHHHHHHHHHHCCCCEEEEecCCc-------------------cH---HHHHHHHHHHCC---------
Confidence 44455555677778899999999999999977421 11 234455544441
Q ss_pred CCCCCeeEEEEEeCCchhHHHHHHhhhcCCcCeeEEEEEeCCCCCCCchHHHHHHHcCCCEEEEcCCcchhHHHHHHHhc
Q 020794 124 DIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ 203 (321)
Q Consensus 124 ~~~~~~rIavl~S~~g~~l~~lL~~~~~~~l~~~i~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~~~~~l~ 203 (321)
... ++-|+-.+.++.-..++.|- .+++|.. -+..+.++|+++|||+..-.- ...|+.+.++
T Consensus 59 ----~~~---vGAGTV~~~e~a~~a~~aGA-----~FivSP~---~~~~v~~~~~~~~i~~iPG~~----TptEi~~A~~ 119 (196)
T PF01081_consen 59 ----DLL---VGAGTVLTAEQAEAAIAAGA-----QFIVSPG---FDPEVIEYAREYGIPYIPGVM----TPTEIMQALE 119 (196)
T ss_dssp ----TSE---EEEES--SHHHHHHHHHHT------SEEEESS-----HHHHHHHHHHTSEEEEEES----SHHHHHHHHH
T ss_pred ----CCe---eEEEeccCHHHHHHHHHcCC-----CEEECCC---CCHHHHHHHHHcCCcccCCcC----CHHHHHHHHH
Confidence 122 45555455555555555562 3566765 356899999999999986432 2235666665
Q ss_pred -CCCEEEE
Q 020794 204 -NTDFLVL 210 (321)
Q Consensus 204 -~~Dlivl 210 (321)
.+|++=+
T Consensus 120 ~G~~~vK~ 127 (196)
T PF01081_consen 120 AGADIVKL 127 (196)
T ss_dssp TT-SEEEE
T ss_pred CCCCEEEE
Confidence 7888744
No 278
>PRK14422 acylphosphatase; Provisional
Probab=44.02 E-value=1e+02 Score=24.79 Aligned_cols=58 Identities=12% Similarity=0.019 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHhhhccceeeeCCCCCCeeEEEEEeCCchhHHHHHHhhhcCCcCeeEEEEEe
Q 020794 102 MDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVIS 163 (321)
Q Consensus 102 L~~~L~~la~~lg~~~~~~r~~~~~~~~rIavl~S~~g~~l~~lL~~~~~~~l~~~i~~Vis 163 (321)
++--...+|.++|+.-|--+.++ -+|-+.+.|....++++++.+++|...+.|..|-.
T Consensus 21 FR~~v~~~A~~~gl~G~V~N~~d----G~Vei~~~G~~~~i~~f~~~l~~gp~~a~V~~i~~ 78 (93)
T PRK14422 21 FRWWTRSRALELGLTGYAANLAD----GRVQVVAEGPRAACEKLLQLLRGDDTPGRVDKVVE 78 (93)
T ss_pred cHHHHHHHHHHcCCEEEEEECCC----CCEEEEEEcCHHHHHHHHHHHHhCCCCcEEEEEEE
Confidence 45667778899998776443332 24778889998899999999988855577776644
No 279
>PRK08210 aspartate kinase I; Reviewed
Probab=43.93 E-value=48 Score=33.04 Aligned_cols=36 Identities=8% Similarity=0.131 Sum_probs=31.2
Q ss_pred ccEEEEEEcCCc-cchHHHHHHHHHhcCCeEeEeeee
Q 020794 41 THGIHVFHCPDE-VGIVAKLSECIASRGGNILAADVF 76 (321)
Q Consensus 41 ~~~Iltv~G~Dr-~GIVA~VS~~La~~G~NI~d~~q~ 76 (321)
+-..+++.+... +|+.++|.+.|+++|+||.-++|.
T Consensus 270 ~i~~isv~~~~~~~g~la~If~~L~~~~I~i~~i~~~ 306 (403)
T PRK08210 270 NVTQIKVKAKENAYDLQQEVFKALAEAGISVDFINIF 306 (403)
T ss_pred CcEEEEEecCCCcchHHHHHHHHHHHcCCeEEEEEec
Confidence 345778887666 999999999999999999999887
No 280
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=43.42 E-value=1.2e+02 Score=28.75 Aligned_cols=71 Identities=15% Similarity=0.190 Sum_probs=39.3
Q ss_pred CCeeEEEEEeCC-chhHHHHHHhhhcCCcCeeEEEEEeCCCCCCCchHHHHHHHcCCCEEEEcCCcchhHHHHHHHhcCC
Q 020794 127 PKYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNT 205 (321)
Q Consensus 127 ~~~rIavl~S~~-g~~l~~lL~~~~~~~l~~~i~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~~~~~l~~~ 205 (321)
+++||+++|.|. |..+. ..+..+....++++|.... .....+++++.|++..+ . .-+++ +.++
T Consensus 5 ~~irIGIIG~G~IG~~~a---~~L~~~~~~~el~aV~dr~----~~~a~~~a~~~g~~~~~-~-----~~eel---l~~~ 68 (271)
T PRK13302 5 PELRVAIAGLGAIGKAIA---QALDRGLPGLTLSAVAVRD----PQRHADFIWGLRRPPPV-V-----PLDQL---ATHA 68 (271)
T ss_pred CeeEEEEECccHHHHHHH---HHHHhcCCCeEEEEEECCC----HHHHHHHHHhcCCCccc-C-----CHHHH---hcCC
Confidence 468999999886 43332 2222221246777665433 12456777887864322 1 11233 3478
Q ss_pred CEEEEEee
Q 020794 206 DFLVLARY 213 (321)
Q Consensus 206 Dlivlag~ 213 (321)
|+++.+.-
T Consensus 69 D~Vvi~tp 76 (271)
T PRK13302 69 DIVVEAAP 76 (271)
T ss_pred CEEEECCC
Confidence 88877643
No 281
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=42.50 E-value=1.2e+02 Score=24.07 Aligned_cols=33 Identities=18% Similarity=0.215 Sum_probs=24.0
Q ss_pred eeEEEEEeCCCCCC-CchHHHHHHHcCCCEEEEc
Q 020794 156 VEITCVISNHDRGP-NSHVIRFLERHGIPYHYLC 188 (321)
Q Consensus 156 ~~i~~Vis~~~~~~-~~~v~~~a~~~gIP~~~~~ 188 (321)
++++.|+++.-... --.+.+.|+++|+|+.+..
T Consensus 49 aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~~~ 82 (97)
T PF10087_consen 49 ADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIYSR 82 (97)
T ss_pred CCEEEEEeCCcChHHHHHHHHHHHHcCCcEEEEC
Confidence 67888887753211 1367899999999999875
No 282
>COG3007 Uncharacterized paraquat-inducible protein B [Function unknown]
Probab=42.44 E-value=1.9e+02 Score=28.92 Aligned_cols=97 Identities=18% Similarity=0.210 Sum_probs=58.1
Q ss_pred CCCCCCeeEEEEEeCCchhHHHHHHhhhcCCcCeeEEEEEeCCCCCC----------CchHHHHHHHcCCCEEEEcCCc-
Q 020794 123 PDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGP----------NSHVIRFLERHGIPYHYLCAKE- 191 (321)
Q Consensus 123 ~~~~~~~rIavl~S~~g~~l~~lL~~~~~~~l~~~i~~Vis~~~~~~----------~~~v~~~a~~~gIP~~~~~~~~- 191 (321)
+..+.++||.|+++.+|--|.+=+... -| ..++-.+|+--++... +.....+|++.|.=...+...-
T Consensus 36 p~~ngPKkVLviGaSsGyGLa~RIsaa-FG-~gAdTiGVffE~pgte~~~gtagwyn~~~f~~~A~~kGlyAksingDaF 113 (398)
T COG3007 36 PIKNGPKKVLVIGASSGYGLAARISAA-FG-PGADTIGVFFERPGTERKPGTAGWYNNAAFKKFAKQKGLYAKSINGDAF 113 (398)
T ss_pred CccCCCceEEEEecCCcccHHHHHHHH-hC-CCCceeeEEeecCCccCCCcchhhhHHHHHHHHHHhcCceeeecccchh
Confidence 345578899999999987766544331 13 2467777776654221 2456889999997655443211
Q ss_pred -chhHHHHHHHhc----CCCEEE--EEeeccccchhh
Q 020794 192 -NEREEELLELVQ----NTDFLV--LARYMQPVPLQK 221 (321)
Q Consensus 192 -~~~~~~~~~~l~----~~Dliv--lag~~~~~~~~~ 221 (321)
++..+.+++.++ +.|++| +|+=+|.-|+.+
T Consensus 114 S~e~k~kvIe~Ik~~~g~vDlvvYSlAsp~Rk~pktg 150 (398)
T COG3007 114 SDEMKQKVIEAIKQDFGKVDLVVYSLASPRRKHPKTG 150 (398)
T ss_pred hHHHHHHHHHHHHHhhccccEEEEeccCccccCCCcc
Confidence 122244556554 799987 344455555444
No 283
>TIGR00486 YbgI_SA1388 dinuclear metal center protein, YbgI/SA1388 family. The characterization of this family of uncharacterized proteins as orthologous is tentative. Members are found in all three domains of life. Several members (from Bacillus subtilis, Listeria monocytogenes, and Mycobacterium tuberculosis - all classified as Firmicutes within the Eubacteria) share a long insert relative to other members.
Probab=42.43 E-value=1.9e+02 Score=27.08 Aligned_cols=92 Identities=18% Similarity=0.183 Sum_probs=47.1
Q ss_pred CCChHHHHHHHHHHHHHhhhccceeeeCC--CCCCeeEEEEEeCCchhHHHHHHhhhcCCcCeeEEEEEeCCCCCCCchH
Q 020794 96 KWPREQMDEDFFKLSKMFNAMRSVVRVPD--IDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHV 173 (321)
Q Consensus 96 ~~~~~~L~~~L~~la~~lg~~~~~~r~~~--~~~~~rIavl~S~~g~~l~~lL~~~~~~~l~~~i~~Vis~~~~~~~~~v 173 (321)
+.+.+++.+.+ .+.++.. ..|+.. ..+.+||||++ |.|..+ +-.+.+.| ++ +.||..- ....
T Consensus 138 ~~~~~~~~~~v---k~~l~~~--~vr~~~~~~~~i~rVAi~~-GsG~~~--~~~a~~~g---aD--~~ITGd~---k~h~ 201 (249)
T TIGR00486 138 PIESLEEVLEI---KKVLNVK--PLLVVKNGPEYVKKVAVVS-GSGLSF--IMKALREG---VD--AYITGDL---SHHT 201 (249)
T ss_pred CCCHHHHHHHH---HHHhCCC--CEEEeCCCCCceeEEEEEc-CchHHH--HHHHHHcC---CC--EEEecCC---chHH
Confidence 34555554444 4556543 244432 23568899974 445432 11222233 33 2455432 2234
Q ss_pred HHHHHHcCCCEEEEcCCcchhH--HHHHHHhc
Q 020794 174 IRFLERHGIPYHYLCAKENERE--EELLELVQ 203 (321)
Q Consensus 174 ~~~a~~~gIP~~~~~~~~~~~~--~~~~~~l~ 203 (321)
...|+++|+.+..+.+...++- +.+.++|+
T Consensus 202 ~~~A~~~gi~li~~gH~~sE~~~~~~la~~L~ 233 (249)
T TIGR00486 202 AHLARELGLNVIDAGHYATERGGLRKLMEDLN 233 (249)
T ss_pred HHHHHHCCCEEEEcCcHHHHHHHHHHHHHHHH
Confidence 6678999999988877433221 34555554
No 284
>PRK14430 acylphosphatase; Provisional
Probab=42.29 E-value=1e+02 Score=24.70 Aligned_cols=58 Identities=17% Similarity=0.017 Sum_probs=42.5
Q ss_pred HHHHHHHHHHhhhccceeeeCCCCCCeeEEEEEeCCchhHHHHHHhhhcCCcCeeEEEEEeC
Q 020794 103 DEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISN 164 (321)
Q Consensus 103 ~~~L~~la~~lg~~~~~~r~~~~~~~~rIavl~S~~g~~l~~lL~~~~~~~l~~~i~~Vis~ 164 (321)
+--...+|.++|+.-|-.+..+ -+|-+++.|....++.+++.+++|...++|.-|-..
T Consensus 20 R~~~~~~A~~lgl~G~VrN~~d----GsVei~~qG~~~~i~~f~~~l~~gp~~a~V~~v~~~ 77 (92)
T PRK14430 20 RAACADAADDLGLGGWVRNRAD----GTVEVMASGTVRQLEALRAWMEAGPPAAQVTKVEVG 77 (92)
T ss_pred HHHHHHHHHHhCCEEEEEECCC----CcEEEEEEcCHHHHHHHHHHHHhCCCceEEEEEEEE
Confidence 4556677888998776443332 358889999999999999999887655787776543
No 285
>TIGR03646 YtoQ_fam YtoQ family protein. Members of this family are uncharacterized proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=42.04 E-value=1.9e+02 Score=25.42 Aligned_cols=109 Identities=15% Similarity=0.237 Sum_probs=60.3
Q ss_pred EEEeCCch-hH-HHHHHhhhcCCcCeeEEEEEeCCCCCCCchHHHHHHHcCCCEEEEcCCcc-hhHHHHHHHhcCCCEEE
Q 020794 133 VLASKQEH-CL-VDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKEN-EREEELLELVQNTDFLV 209 (321)
Q Consensus 133 vl~S~~g~-~l-~~lL~~~~~~~l~~~i~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~~~~~-~~~~~~~~~l~~~Dliv 209 (321)
|.-||+-| .- +.+.+.+++..||.+.+.-+++|++.-++.+ +..-+..=++.. +++.. .+.-....+++++|++|
T Consensus 3 VYLsGEIHtdWRe~I~~ga~~~~L~v~F~~pvtdH~aSD~~G~-~iLG~e~~~fw~-D~k~a~iNaiRT~~li~~aDvvV 80 (144)
T TIGR03646 3 VYLAGEIHTDWREEIKEGAKSKNLPIVFSGPVTDHEASDNIGE-DILGKQPSNFWR-DDAAASINNIRTRKLIEKADVVI 80 (144)
T ss_pred EEEcCcccchHHHHHHHHHHHcCCCeEEecCCCCCcchhhhhH-HHhCCCCccccc-cccccchhhHHHHHHHhhCCEEE
Confidence 34566654 33 4577778888899999999999975333332 222222222221 33321 11112233445899885
Q ss_pred EEeeccccchhhHhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeEEecCCCC
Q 020794 210 LARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLL 267 (321)
Q Consensus 210 lag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~l~~~~~~~INiHpslL 267 (321)
++|+- -|--|.. -+............|-+||--+
T Consensus 81 -vrFGe-------kYKQWNa----------------AfDAg~aaAlgKplI~lh~~~~ 114 (144)
T TIGR03646 81 -ALFGE-------KYKQWNA----------------AFDAGYAAALGKPLIILRPEEL 114 (144)
T ss_pred -EEech-------HHHHHHH----------------HhhHHHHHHcCCCeEEecchhc
Confidence 56753 4444422 2344455666778898988543
No 286
>PRK14429 acylphosphatase; Provisional
Probab=41.56 E-value=1.2e+02 Score=24.17 Aligned_cols=59 Identities=12% Similarity=0.097 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHhhhccceeeeCCCCCCeeEEEEEeCCchhHHHHHHhhhcCCcCeeEEEEEeC
Q 020794 102 MDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISN 164 (321)
Q Consensus 102 L~~~L~~la~~lg~~~~~~r~~~~~~~~rIavl~S~~g~~l~~lL~~~~~~~l~~~i~~Vis~ 164 (321)
++.-...+|.++|+.-|-.+.. .-.|-+.+.|+...++++++.+++|...+.|..+-..
T Consensus 17 FR~~v~~~A~~~gl~G~V~N~~----dG~Vei~~qG~~~~i~~f~~~l~~gp~~a~V~~i~~~ 75 (90)
T PRK14429 17 CRRATLTKARALGVTGYVTNCE----DGSVEILAQGSDPAVDNLIAWCEVGVPCTEVLRVTVE 75 (90)
T ss_pred eHHHHHHHHHHhCCEEEEEECC----CCeEEEEEEeCHHHHHHHHHHHhhCCCceEEEEEEEE
Confidence 3556677889999876643332 2367888888888899999999888545677665443
No 287
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=41.49 E-value=1e+02 Score=29.68 Aligned_cols=71 Identities=18% Similarity=0.229 Sum_probs=39.5
Q ss_pred CeeEEEEEeCCchhHHHHHHhhhcCC-cCeeEEEEEeCCCCCCCchHHHHHHHcCCCEEEEcCCcchhHHHHHHHhcCCC
Q 020794 128 KYKVAVLASKQEHCLVDFLYGWQEGK-LPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTD 206 (321)
Q Consensus 128 ~~rIavl~S~~g~~l~~lL~~~~~~~-l~~~i~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~~~~~l~~~D 206 (321)
.+||+|+|.|+ --++|+..+.+.. ++.+-. +++++. +....++++++|+.+ ... . .+.+.++|
T Consensus 1 ~~~IgfIG~G~--Mg~Ai~~gl~~~g~~~~~~I-~v~~~~---~e~~~~l~~~~g~~~--~~~-----~---~~~~~~ad 64 (266)
T COG0345 1 MMKIGFIGAGN--MGEAILSGLLKSGALPPEEI-IVTNRS---EEKRAALAAEYGVVT--TTD-----N---QEAVEEAD 64 (266)
T ss_pred CceEEEEccCH--HHHHHHHHHHhcCCCCcceE-EEeCCC---HHHHHHHHHHcCCcc--cCc-----H---HHHHhhCC
Confidence 36899998654 3345666654433 443333 445653 223446889999884 221 1 12223688
Q ss_pred EEEEEeec
Q 020794 207 FLVLARYM 214 (321)
Q Consensus 207 livlag~~ 214 (321)
++|++==.
T Consensus 65 vv~LavKP 72 (266)
T COG0345 65 VVFLAVKP 72 (266)
T ss_pred EEEEEeCh
Confidence 88887433
No 288
>PF01250 Ribosomal_S6: Ribosomal protein S6; InterPro: IPR000529 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S6 is one of the proteins from the small ribosomal subunit. In Escherichia coli, S6 is known to bind together with S18 to 16S ribosomal RNA. It belongs to a family of ribosomal proteins which, on the basis of sequence similarities, groups bacterial, red algal chloroplast and cyanelle S6 ribosomal proteins.; GO: 0003735 structural constituent of ribosome, 0019843 rRNA binding, 0006412 translation, 0005840 ribosome; PDB: 3BBN_F 3R3T_B 3F1E_F 2QNH_g 2OW8_g 3PYQ_F 3PYS_F 3PYU_F 3MR8_F 3PYN_F ....
Probab=40.43 E-value=82 Score=24.65 Aligned_cols=53 Identities=11% Similarity=0.295 Sum_probs=36.0
Q ss_pred ccchHHHHHHHHHhcCCeEeEeeeec---------cCCCCeEEEEEEEEeCCCCCChHHHHHHHH
Q 020794 52 EVGIVAKLSECIASRGGNILAADVFV---------PEKKNVFYSRSEFIFDPIKWPREQMDEDFF 107 (321)
Q Consensus 52 r~GIVA~VS~~La~~G~NI~d~~q~~---------~~l~g~F~Mr~~v~~~~~~~~~~~L~~~L~ 107 (321)
..-++..+.+.|.++||.|..++.-. ...+|.|+ .+.++.++. ...+|++.|.
T Consensus 18 ~~~~~~~~~~~i~~~gg~v~~~~~~G~r~LaY~i~k~~~G~Y~-~~~f~~~~~--~i~el~~~l~ 79 (92)
T PF01250_consen 18 IKKLIERVKKIIEKNGGVVRSVENWGKRRLAYPIKKQKEGHYF-LFNFDASPS--AIKELERKLR 79 (92)
T ss_dssp HHHHHHHHHHHHHHTTEEEEEEEEEEEEEESSEETTECEEEEE-EEEEEESTT--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCEEEEEEEEeecccccCCCCCCEEEEE-EEEEEeCHH--HHHHHHHHhc
Confidence 55677889999999999999987753 12456666 567777642 3455554444
No 289
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=40.34 E-value=1e+02 Score=26.39 Aligned_cols=59 Identities=19% Similarity=0.167 Sum_probs=36.1
Q ss_pred eEEEEEeCCc--hhHHHHHHhhhcCC-cCeeEEEEEeCCCCCC-----CchHHHHHHHcCCCEEEEc
Q 020794 130 KVAVLASKQE--HCLVDFLYGWQEGK-LPVEITCVISNHDRGP-----NSHVIRFLERHGIPYHYLC 188 (321)
Q Consensus 130 rIavl~S~~g--~~l~~lL~~~~~~~-l~~~i~~Vis~~~~~~-----~~~v~~~a~~~gIP~~~~~ 188 (321)
||+|..||.. +.+..++..+.... ...++.++..++.-.. ...+.++|++.|||+..+.
T Consensus 1 ~v~v~~SGG~DS~~ll~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 67 (185)
T cd01993 1 RILVALSGGKDSLVLLHVLKKLQRRYPYGFELEALTVDEGIPGYRDESLEVVERLAEELGIELEIVS 67 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHhhcCCCeEEEEEEEECCCCCCcHHHHHHHHHHHHHcCCceEEEe
Confidence 6889999974 33444554432211 1356777766653211 1356788999999998775
No 290
>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]
Probab=40.00 E-value=2.2e+02 Score=26.57 Aligned_cols=58 Identities=24% Similarity=0.308 Sum_probs=39.2
Q ss_pred CeeEEEEEeCCc--hhHHHHHHhhhcCCcCeeEEEEEeCCCCCC-----CchHHHHHHHcCCCEEEEc
Q 020794 128 KYKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGP-----NSHVIRFLERHGIPYHYLC 188 (321)
Q Consensus 128 ~~rIavl~S~~g--~~l~~lL~~~~~~~l~~~i~~Vis~~~~~~-----~~~v~~~a~~~gIP~~~~~ 188 (321)
..||+|-+||.. ..|-.+|..+... .++.+|-.||.-.. ...+..+|+..|||..+..
T Consensus 21 ~~~ilVavSGGkDS~~ll~~L~~l~~~---~~~~a~~Vd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 85 (298)
T COG0037 21 EYKILVAVSGGKDSLALLHLLKELGRR---IEVEAVHVDHGLRGYSDQEAELVEKLCEKLGIPLIVER 85 (298)
T ss_pred CCeEEEEeCCChHHHHHHHHHHHhccC---ceEEEEEecCCCCCccchHHHHHHHHHHHhCCceEEEE
Confidence 679999999974 3455555554322 57777777764322 1356888999999987654
No 291
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=39.97 E-value=42 Score=26.60 Aligned_cols=49 Identities=10% Similarity=0.127 Sum_probs=29.4
Q ss_pred EEeCCchhHHHHHHhhhcCCcCeeEEEEEeCCCCCCCchHHHHHHHcCCCEEEEc
Q 020794 134 LASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC 188 (321)
Q Consensus 134 l~S~~g~~l~~lL~~~~~~~l~~~i~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~ 188 (321)
+++|....++++ ++|+ +..+.+-.|-+......+..+|+.++||+.+..
T Consensus 9 lv~G~~~vlkaI----k~gk--akLViiA~Da~~~~~k~i~~~c~~~~Vpv~~~~ 57 (82)
T PRK13601 9 RVVGAKQTLKAI----TNCN--VLQVYIAKDAEEHVTKKIKELCEEKSIKIVYID 57 (82)
T ss_pred EEEchHHHHHHH----HcCC--eeEEEEeCCCCHHHHHHHHHHHHhCCCCEEEeC
Confidence 455665555554 4453 455544444332112477889999999997654
No 292
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=39.88 E-value=3.2e+02 Score=25.55 Aligned_cols=121 Identities=15% Similarity=0.126 Sum_probs=74.5
Q ss_pred EEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHHHHHhhhccceeeeC
Q 020794 44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRVP 123 (321)
Q Consensus 44 Iltv~G~Dr~GIVA~VS~~La~~G~NI~d~~q~~~~l~g~F~Mr~~v~~~~~~~~~~~L~~~L~~la~~lg~~~~~~r~~ 123 (321)
++-|+=.+.+--...+++.|.+.|+..+|++.+.. . .. +.++.+.++++-
T Consensus 17 vi~Vvr~~~~~~a~~~~~al~~gGi~~iEiT~~tp---------------~---a~----~~i~~l~~~~~~-------- 66 (222)
T PRK07114 17 MVPVFYHADVEVAKKVIKACYDGGARVFEFTNRGD---------------F---AH----EVFAELVKYAAK-------- 66 (222)
T ss_pred EEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCC---------------c---HH----HHHHHHHHHHHh--------
Confidence 44445566777778899999999999999977532 1 11 334444433321
Q ss_pred CCCCCeeEEEEEeCCchhHHHHHHhhhcCCcCeeEEEEEeCCCCCCCchHHHHHHHcCCCEEEEcCCcchhHHHHHHHhc
Q 020794 124 DIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ 203 (321)
Q Consensus 124 ~~~~~~rIavl~S~~g~~l~~lL~~~~~~~l~~~i~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~~~~~l~ 203 (321)
..+ + +.++.|+-.+.++.-.....| + .+++|.. -+..+.++|+++|||+..-. ....|+.+.++
T Consensus 67 -~~p--~-~~vGaGTVl~~e~a~~a~~aG---A--~FiVsP~---~~~~v~~~~~~~~i~~iPG~----~TpsEi~~A~~ 130 (222)
T PRK07114 67 -ELP--G-MILGVGSIVDAATAALYIQLG---A--NFIVTPL---FNPDIAKVCNRRKVPYSPGC----GSLSEIGYAEE 130 (222)
T ss_pred -hCC--C-eEEeeEeCcCHHHHHHHHHcC---C--CEEECCC---CCHHHHHHHHHcCCCEeCCC----CCHHHHHHHHH
Confidence 001 2 235666655556655555555 2 3566655 34589999999999987532 12346776666
Q ss_pred -CCCEEEE
Q 020794 204 -NTDFLVL 210 (321)
Q Consensus 204 -~~Dlivl 210 (321)
.+|++=+
T Consensus 131 ~Ga~~vKl 138 (222)
T PRK07114 131 LGCEIVKL 138 (222)
T ss_pred CCCCEEEE
Confidence 7888744
No 293
>PRK00453 rpsF 30S ribosomal protein S6; Reviewed
Probab=39.88 E-value=1.8e+02 Score=23.56 Aligned_cols=42 Identities=19% Similarity=0.305 Sum_probs=31.0
Q ss_pred ccchHHHHHHHHHhcCCeEeEeeeec---------cCCCCeEEEEEEEEeCC
Q 020794 52 EVGIVAKLSECIASRGGNILAADVFV---------PEKKNVFYSRSEFIFDP 94 (321)
Q Consensus 52 r~GIVA~VS~~La~~G~NI~d~~q~~---------~~l~g~F~Mr~~v~~~~ 94 (321)
...++..+.+.|.++||.|..++--. ...+|.|+ .+.++.++
T Consensus 19 ~~~~~~~~~~~i~~~gg~i~~~~~~G~r~LAY~I~k~~~G~Y~-~~~f~~~~ 69 (108)
T PRK00453 19 VKALVERFKGVITENGGTIHKVEDWGRRRLAYPINKLRKGHYV-LLNFEAPP 69 (108)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEecccccccceEcCCCcEEEEE-EEEEEeCH
Confidence 56788899999999999999987553 12466665 66677653
No 294
>TIGR00243 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase. 1-deoxy-D-xylulose 5-phosphate is converted to 2-C-methyl-D-erythritol 4-phosphate in the presence of NADPH. It is involved in the synthesis of isopentenyl diphosphate (IPP), a basic building block in isoprenoid, thiamin, and pyridoxal biosynthesis.
Probab=39.63 E-value=1.7e+02 Score=29.79 Aligned_cols=54 Identities=6% Similarity=0.075 Sum_probs=34.3
Q ss_pred eeEEEEEeCC--chhHHHHHHhhhcCCcCeeEEEEEeCCCCCCCchHHHHHHHcCCCEEEEc
Q 020794 129 YKVAVLASKQ--EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC 188 (321)
Q Consensus 129 ~rIavl~S~~--g~~l~~lL~~~~~~~l~~~i~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~ 188 (321)
+||+||||-. |...-+++.+. .-..+|+++..++. -.-+.+.|++++-.+..+.
T Consensus 2 k~i~IlGsTGSIG~qtL~Vi~~~---~~~f~v~~Laa~~n---~~~L~~q~~~f~p~~v~i~ 57 (389)
T TIGR00243 2 KQIVILGSTGSIGKSTLDVVRHN---PDHFQVVALSAGKN---VALMVEQILEFRPKFVAID 57 (389)
T ss_pred ceEEEEecChHHHHHHHHHHHhC---ccccEEEEEEcCCC---HHHHHHHHHHcCCCEEEEc
Confidence 5899999765 34444444432 22478888876652 2356788888887776664
No 295
>PRK14447 acylphosphatase; Provisional
Probab=39.59 E-value=91 Score=25.11 Aligned_cols=59 Identities=8% Similarity=0.009 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHhhhccceeeeCCCCCCeeEEEEEeCCchhHHHHHHhhhcCCcCeeEEEEEe
Q 020794 102 MDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVIS 163 (321)
Q Consensus 102 L~~~L~~la~~lg~~~~~~r~~~~~~~~rIavl~S~~g~~l~~lL~~~~~~~l~~~i~~Vis 163 (321)
++--...+|.++|+.-|-.+..+ -.+|-+.+.|....++++++.+++|...++|..+-.
T Consensus 19 FR~~~~~~A~~~gl~G~V~N~~d---G~~Vei~~qG~~~~l~~f~~~l~~gp~~a~V~~v~~ 77 (95)
T PRK14447 19 FRQSMKEVANRNGVRGWVRNRSD---GRTVEAVLEGPRDAVLKVIEWARVGPPGARVEDVEV 77 (95)
T ss_pred chHHHHHHHhhcCeEEEEEECCC---CCEEEEEEEeCHHHHHHHHHHHhhCCCCeEEEEEEE
Confidence 35556678889998776544432 124777788888999999999888766677776644
No 296
>PRK14436 acylphosphatase; Provisional
Probab=39.56 E-value=1.3e+02 Score=24.06 Aligned_cols=59 Identities=14% Similarity=0.082 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHhhhccceeeeCCCCCCeeEEEEEeCCchhHHHHHHhhhcCCcCeeEEEEEeC
Q 020794 102 MDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISN 164 (321)
Q Consensus 102 L~~~L~~la~~lg~~~~~~r~~~~~~~~rIavl~S~~g~~l~~lL~~~~~~~l~~~i~~Vis~ 164 (321)
++.-...+|.++|+.-|-.+..+ -+|-+.+.|+...+.++++.++++...+.|..|-..
T Consensus 19 FR~~v~~~A~~l~l~G~V~N~~d----G~Vei~~qG~~~~i~~f~~~l~~gp~~a~V~~v~~~ 77 (91)
T PRK14436 19 FRWSMQREARKLGVNGWVRNLPD----GSVEAVLEGDEERVEALIGWAHQGPPLARVTRVEVK 77 (91)
T ss_pred cHHHHHHHHHHcCCEEEEEECCC----CcEEEEEEcCHHHHHHHHHHHhhCCCceEEEEEEEE
Confidence 45666778889998776443332 367788888888899999988877555777766543
No 297
>PRK14440 acylphosphatase; Provisional
Probab=39.46 E-value=1.2e+02 Score=24.19 Aligned_cols=58 Identities=19% Similarity=0.116 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHhhhccceeeeCCCCCCeeEEEEEeCCchhHHHHHHhhhcCCcCeeEEEEEe
Q 020794 102 MDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVIS 163 (321)
Q Consensus 102 L~~~L~~la~~lg~~~~~~r~~~~~~~~rIavl~S~~g~~l~~lL~~~~~~~l~~~i~~Vis 163 (321)
++.-....|.++|+.-|-.+..+ -.|-+.+.|....++++++.+++|...+.|.-+-.
T Consensus 18 FR~~v~~~A~~~gl~G~V~N~~d----G~Vei~~~G~~~~v~~f~~~l~~gp~~a~V~~i~~ 75 (90)
T PRK14440 18 FRKFVQIHAIRLGIKGYAKNLPD----GSVEVVAEGYEEALSKLLERIKQGPPAAEVEKVDF 75 (90)
T ss_pred chHHHHHHHHHcCCEEEEEECCC----CCEEEEEEcCHHHHHHHHHHHhhCCCCcEEEEEEE
Confidence 45667778889998776333322 26778888888889999999888765567766543
No 298
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=38.96 E-value=3e+02 Score=25.88 Aligned_cols=69 Identities=16% Similarity=0.248 Sum_probs=35.9
Q ss_pred HHHHhcCCCEEEEEeeccccchhhHhhhhhhhhhhhcccCcccccccccCChhHHhhc--CCCeEEecCCCCCCC
Q 020794 198 LLELVQNTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSY--GKDVINIHHGLLPSF 270 (321)
Q Consensus 198 ~~~~l~~~Dlivlag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~l~~~--~~~~INiHpslLP~y 270 (321)
+.+.++++|+++.+-.-+ +..+.+.+.. +.........++.--+.+.+..+.+.. +.+++++|+-- |.|
T Consensus 78 ~~~a~~~aDlVieavpe~-~~~k~~~~~~--l~~~~~~~~ii~sntSt~~~~~~~~~~~~~~r~vg~Hf~~-p~~ 148 (287)
T PRK08293 78 LAEAVKDADLVIEAVPED-PEIKGDFYEE--LAKVAPEKTIFATNSSTLLPSQFAEATGRPEKFLALHFAN-EIW 148 (287)
T ss_pred HHHHhcCCCEEEEeccCC-HHHHHHHHHH--HHhhCCCCCEEEECcccCCHHHHHhhcCCcccEEEEcCCC-CCC
Confidence 334455899999986543 1122222222 222233333444444455555666543 56799999944 444
No 299
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family. The delineation of this family was based originally, in part, on a discussion and neighbor-joining phylogenetic study by Kyrpides and Woese of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. Recently, Sato, et al. assigned the function ribulose-1,5 bisphosphate isomerase.
Probab=38.63 E-value=1.8e+02 Score=28.27 Aligned_cols=54 Identities=20% Similarity=0.321 Sum_probs=29.1
Q ss_pred EEEeCC-chhHHHHHHhhhcCCcCeeEEEEEeCCCCCCCchHHHHHHHcCCCEEEEc
Q 020794 133 VLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC 188 (321)
Q Consensus 133 vl~S~~-g~~l~~lL~~~~~~~l~~~i~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~ 188 (321)
||.-+. +..+..|+.+.++|+ +.+|. |.-+++...+......+.+.|||+..++
T Consensus 119 ILT~~~S~tv~~~l~~a~~~~~-~f~V~-v~EsrP~~~G~~~a~~L~~~gI~vtlI~ 173 (301)
T TIGR00511 119 VMTHCNSEAALSVIKTAFEQGK-DIEVI-ATETRPRKQGHITAKELRDYGIPVTLIV 173 (301)
T ss_pred EEEECCcHHHHHHHHHHHHcCC-cEEEE-EecCCCcchHHHHHHHHHHCCCCEEEEe
Confidence 444444 344454555555554 34544 3333333223344556677899999886
No 300
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase
Probab=38.60 E-value=93 Score=37.06 Aligned_cols=74 Identities=15% Similarity=-0.026 Sum_probs=49.3
Q ss_pred CcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccC----C-------------CCeEEEEEEEEeCC--CCCCh
Q 020794 39 TLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPE----K-------------KNVFYSRSEFIFDP--IKWPR 99 (321)
Q Consensus 39 ~~~~~Iltv~G~Dr~GIVA~VS~~La~~G~NI~d~~q~~~~----l-------------~g~F~Mr~~v~~~~--~~~~~ 99 (321)
.....+|.++++|.|=+|..|+..|..+|..|.-+...+.. . ++.--..|.++++. .+...
T Consensus 14 ~~~~TvI~IV~dDmPFLVDSV~~~L~r~gl~I~~i~HPVl~V~RD~~G~L~~v~~~~~~~~~~ES~I~ieId~~~d~~~~ 93 (1528)
T PF05088_consen 14 ESDHTVIEIVTDDMPFLVDSVRMELNRQGLTIHLIIHPVLNVERDADGKLVAVGPADDSGGTRESWIHIEIDRQSDPEEL 93 (1528)
T ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHhCCCceEEEecCcEEEEECCCCcEEEecCCCCCCCceEEEEEEEEcCCCCHHHH
Confidence 34478999999999999999999999999999876544210 0 22223344444432 23346
Q ss_pred HHHHHHHHHHHHH
Q 020794 100 EQMDEDFFKLSKM 112 (321)
Q Consensus 100 ~~L~~~L~~la~~ 112 (321)
++|+++|..+-++
T Consensus 94 ~~L~~~L~~VL~d 106 (1528)
T PF05088_consen 94 EALREDLERVLED 106 (1528)
T ss_pred HHHHHHHHHHHHH
Confidence 7777777665544
No 301
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=38.41 E-value=1.4e+02 Score=27.97 Aligned_cols=53 Identities=17% Similarity=0.232 Sum_probs=32.0
Q ss_pred eeEEEEEeCCchhHH---HHHHhhhcCCcCeeEEEEEeCCCCCCCchHHHHHHHcCCCEEEEc
Q 020794 129 YKVAVLASKQEHCLV---DFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC 188 (321)
Q Consensus 129 ~rIavl~S~~g~~l~---~lL~~~~~~~l~~~i~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~ 188 (321)
|||.|.+.+.+..+. .|...+.+. .+++..+ +.+. . ....+.++.|++++.++
T Consensus 1 ~~i~~~~g~~~g~~~~~~~La~~L~~~--g~eV~vv-~~~~-~---~~~~~~~~~g~~~~~i~ 56 (348)
T TIGR01133 1 KKVVLAAGGTGGHIFPALAVAEELIKR--GVEVLWL-GTKR-G---LEKRLVPKAGIEFYFIP 56 (348)
T ss_pred CeEEEEeCccHHHHhHHHHHHHHHHhC--CCEEEEE-eCCC-c---chhcccccCCCceEEEe
Confidence 488888888764443 466665543 3787755 4421 1 12234456799998776
No 302
>PRK14665 mnmA tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=38.35 E-value=1.5e+02 Score=29.69 Aligned_cols=58 Identities=21% Similarity=0.123 Sum_probs=37.7
Q ss_pred CCeeEEEEEeCCc--hhHHHHHHhhhcCCcCeeEEEEEeCC-CCC-CC---chHHHHHHHcCCCEEEEcC
Q 020794 127 PKYKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNH-DRG-PN---SHVIRFLERHGIPYHYLCA 189 (321)
Q Consensus 127 ~~~rIavl~S~~g--~~l~~lL~~~~~~~l~~~i~~Vis~~-~~~-~~---~~v~~~a~~~gIP~~~~~~ 189 (321)
+..||+|..||.- +.+..+|.. .| .++.+|..+. +.. .. ..+.++|+++|||++.++-
T Consensus 4 ~~~kVlValSGGVDSsvaa~LL~~--~G---~~V~~v~~~~~~~~~~~~d~~~a~~va~~LgIp~~vvd~ 68 (360)
T PRK14665 4 KNKRVLLGMSGGTDSSVAAMLLLE--AG---YEVTGVTFRFYEFNGSTEYLEDARALAERLGIGHITYDA 68 (360)
T ss_pred CCCEEEEEEcCCHHHHHHHHHHHH--cC---CeEEEEEEecCCCCCChHHHHHHHHHHHHhCCCEEEEec
Confidence 4569999999973 344445543 23 5788776643 111 11 2357899999999998763
No 303
>CHL00123 rps6 ribosomal protein S6; Validated
Probab=38.32 E-value=2.1e+02 Score=23.04 Aligned_cols=42 Identities=5% Similarity=0.114 Sum_probs=30.5
Q ss_pred ccchHHHHHHHHHhcCCeEeEeeeecc---------CCCCeEEEEEEEEeCC
Q 020794 52 EVGIVAKLSECIASRGGNILAADVFVP---------EKKNVFYSRSEFIFDP 94 (321)
Q Consensus 52 r~GIVA~VS~~La~~G~NI~d~~q~~~---------~l~g~F~Mr~~v~~~~ 94 (321)
..+++..+.+.|.++||.|+.++.-.. ..+|.|. .+.|+.++
T Consensus 23 ~~~~~~~~~~~i~~~gg~i~~~~~wG~r~LAY~I~k~~~G~Yv-~~~f~~~~ 73 (97)
T CHL00123 23 LLKWIENYKKLLRKRGAKNISVQNRGKRKLSYKINKYEDGIYI-QMNYSGNG 73 (97)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEEeecCeeeeEEcCCCCEEEEE-EEEEEECH
Confidence 567888899999999999999876531 1345444 66777754
No 304
>PRK14431 acylphosphatase; Provisional
Probab=38.32 E-value=1.1e+02 Score=24.34 Aligned_cols=57 Identities=19% Similarity=0.188 Sum_probs=41.4
Q ss_pred HHHHHHHHHHhhhccceeeeCCCCCCeeEEEEEeCCchhHHHHHHhhhcCC-cCeeEEEEEeC
Q 020794 103 DEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGK-LPVEITCVISN 164 (321)
Q Consensus 103 ~~~L~~la~~lg~~~~~~r~~~~~~~~rIavl~S~~g~~l~~lL~~~~~~~-l~~~i~~Vis~ 164 (321)
+--...+|.++|+.-|-.+.. . .|-+.+.|....+++++..+++|. ..++|..|...
T Consensus 18 R~~~~~~A~~~gl~G~V~N~~---d--gVei~~qG~~~~l~~f~~~l~~g~p~~a~V~~v~~~ 75 (89)
T PRK14431 18 RYFTQRIAMNYNIVGTVQNVD---D--YVEIYAQGDDADLERFIQGVIEGASPASNVTSYQLE 75 (89)
T ss_pred hHHHHHHHhhcCCEEEEEECC---C--cEEEEEEcCHHHHHHHHHHHhcCCCCcEEEEEEEEE
Confidence 344566788899877644332 2 388999999999999999999886 35777766443
No 305
>PRK14433 acylphosphatase; Provisional
Probab=38.13 E-value=1.2e+02 Score=24.14 Aligned_cols=59 Identities=15% Similarity=0.099 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHhhhccceeeeCCCCCCeeEEEEEeCCchhHHHHHHhhhcCCcCeeEEEEEeC
Q 020794 102 MDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISN 164 (321)
Q Consensus 102 L~~~L~~la~~lg~~~~~~r~~~~~~~~rIavl~S~~g~~l~~lL~~~~~~~l~~~i~~Vis~ 164 (321)
++.-...+|.++|+.-|--+.++ -.|-+.+.|+...++++++.++++...++|.-|-..
T Consensus 16 FR~~v~~~A~~~~l~G~V~N~~d----G~Vei~~~G~~~~i~~f~~~l~~gP~~a~V~~i~~~ 74 (87)
T PRK14433 16 YRAFVQKKARELGLSGYAENLSD----GRVEVVAEGPKEALERLLHWLRRGPRHARVEAVDVQ 74 (87)
T ss_pred chHHHHHHHHHcCCEEEEEECCC----CCEEEEEEECHHHHHHHHHHHhhCCCCcEEEEEEEE
Confidence 35566778889998776433332 257788888888999999999887655777766544
No 306
>PRK13820 argininosuccinate synthase; Provisional
Probab=38.10 E-value=1e+02 Score=31.42 Aligned_cols=58 Identities=17% Similarity=0.011 Sum_probs=38.5
Q ss_pred CeeEEEEEeCCc--hhHHHHHHhhhcCCcCe-eEEEEEeCCCCCC--CchHHHHHHHcCCCEEEEcC
Q 020794 128 KYKVAVLASKQE--HCLVDFLYGWQEGKLPV-EITCVISNHDRGP--NSHVIRFLERHGIPYHYLCA 189 (321)
Q Consensus 128 ~~rIavl~S~~g--~~l~~lL~~~~~~~l~~-~i~~Vis~~~~~~--~~~v~~~a~~~gIP~~~~~~ 189 (321)
..||++..||.- +.+..+|.. .+.. ++.+|..+..... -..+.++|++.|||++.++.
T Consensus 2 ~~kVvvA~SGGvDSsvll~lL~e----~~g~~~Viav~vd~g~~~~e~~~a~~~a~~lGi~~~vvd~ 64 (394)
T PRK13820 2 MKKVVLAYSGGLDTSVCVPLLKE----KYGYDEVITVTVDVGQPEEEIKEAEEKAKKLGDKHYTIDA 64 (394)
T ss_pred CCeEEEEEeCcHHHHHHHHHHHH----hcCCCEEEEEEEECCCChHHHHHHHHHHHHcCCCEEEEeC
Confidence 358999999973 344444432 2334 7887777763211 13578999999999998874
No 307
>PRK14426 acylphosphatase; Provisional
Probab=37.89 E-value=1.4e+02 Score=23.90 Aligned_cols=59 Identities=14% Similarity=0.103 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHhhhccceeeeCCCCCCeeEEEEEeCCchhHHHHHHhhhcC-CcCeeEEEEEeC
Q 020794 102 MDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEG-KLPVEITCVISN 164 (321)
Q Consensus 102 L~~~L~~la~~lg~~~~~~r~~~~~~~~rIavl~S~~g~~l~~lL~~~~~~-~l~~~i~~Vis~ 164 (321)
++.-...+|.++|+.-|-.+.++. .|-+.+.|....++++++.+++| ...+.|..|-..
T Consensus 19 FR~~v~~~A~~~gl~G~V~N~~dG----~Vei~~~G~~~~i~~f~~~l~~g~P~~a~V~~i~~~ 78 (92)
T PRK14426 19 FRYHTQHEALKLGLTGYAKNLDDG----SVEVVACGEEEQVEKLMEWLKEGGPRSARVDRVLTE 78 (92)
T ss_pred chHHHHHHHHHhCCEEEEEECCCC----cEEEEEEeCHHHHHHHHHHHhcCCCCCeEEEEEEEE
Confidence 466677888999987774444332 57788888888899999999887 444677665443
No 308
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=37.40 E-value=2.8e+02 Score=26.52 Aligned_cols=92 Identities=17% Similarity=0.211 Sum_probs=52.0
Q ss_pred CCCCCCeeEEEEEeCCchhHHHHHHhhhcCCcCeeEEEEEeCCCCCCC-----chHHHHHHHcC----CCEEEEcCCcch
Q 020794 123 PDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPN-----SHVIRFLERHG----IPYHYLCAKENE 193 (321)
Q Consensus 123 ~~~~~~~rIavl~S~~g~~l~~lL~~~~~~~l~~~i~~Vis~~~~~~~-----~~v~~~a~~~g----IP~~~~~~~~~~ 193 (321)
+...-++||||+.|.+|..++|++.-++.-....++. ++...-.+.+ ...++.+.+.+ +-+..+..-+.+
T Consensus 9 ~lP~~p~~I~vITs~~gAa~~D~~~~~~~r~~~~~~~-~~p~~vQG~~A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs 87 (319)
T PF02601_consen 9 PLPKFPKRIAVITSPTGAAIQDFLRTLKRRNPIVEII-LYPASVQGEGAAASIVSALRKANEMGQADDFDVIIIIRGGGS 87 (319)
T ss_pred CCCCCCCEEEEEeCCchHHHHHHHHHHHHhCCCcEEE-EEeccccccchHHHHHHHHHHHHhccccccccEEEEecCCCC
Confidence 3445678999999999999999998766533224544 2222222222 12344444433 555555543221
Q ss_pred -------hHHHHHHHhcCCCEEEEEeecc
Q 020794 194 -------REEELLELVQNTDFLVLARYMQ 215 (321)
Q Consensus 194 -------~~~~~~~~l~~~Dlivlag~~~ 215 (321)
+++++.+.+.+..+=|+.|-+|
T Consensus 88 ~eDL~~FN~e~varai~~~~~PvisaIGH 116 (319)
T PF02601_consen 88 IEDLWAFNDEEVARAIAASPIPVISAIGH 116 (319)
T ss_pred hHHhcccChHHHHHHHHhCCCCEEEecCC
Confidence 3456666665544545566666
No 309
>PRK00124 hypothetical protein; Validated
Probab=37.16 E-value=2.9e+02 Score=24.49 Aligned_cols=85 Identities=8% Similarity=0.044 Sum_probs=52.5
Q ss_pred EEEEEEeCCCCCChHHHHHHHHHHHHHhhhccceee--eCCC----CCCeeEEEEEeCCchhHHHHHHhhhcCCcCeeEE
Q 020794 86 SRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVR--VPDI----DPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEIT 159 (321)
Q Consensus 86 Mr~~v~~~~~~~~~~~L~~~L~~la~~lg~~~~~~r--~~~~----~~~~rIavl~S~~g~~l~~lL~~~~~~~l~~~i~ 159 (321)
|.+.+|.+..+ +.+.+..++++++++.+... -+.. .+-.+..+..+|....=..|++.++.|.
T Consensus 1 m~I~VDADACP-----Vk~~i~r~a~r~~i~v~~Vas~n~~~~~~~~~~v~~v~V~~g~D~AD~~Iv~~~~~gD------ 69 (151)
T PRK00124 1 MKIYVDADACP-----VKDIIIRVAERHGIPVTLVASFNHFLRVPYSPFIRTVYVDAGFDAADNEIVQLAEKGD------ 69 (151)
T ss_pred CEEEEECCCCc-----HHHHHHHHHHHHCCeEEEEEeCCcccCCCCCCceEEEEeCCCCChHHHHHHHhCCCCC------
Confidence 56777776543 77888999999997655322 1111 1112444444444443334777776663
Q ss_pred EEEeCCCCCCCchHHHHHHHcCCCEEE
Q 020794 160 CVISNHDRGPNSHVIRFLERHGIPYHY 186 (321)
Q Consensus 160 ~Vis~~~~~~~~~v~~~a~~~gIP~~~ 186 (321)
.|||. +.++...|...|.-+..
T Consensus 70 iVIT~-----Di~LAa~~l~Kga~vl~ 91 (151)
T PRK00124 70 IVITQ-----DYGLAALALEKGAIVLN 91 (151)
T ss_pred EEEeC-----CHHHHHHHHHCCCEEEC
Confidence 36775 46899999999987764
No 310
>PRK10124 putative UDP-glucose lipid carrier transferase; Provisional
Probab=37.02 E-value=3.1e+02 Score=28.09 Aligned_cols=60 Identities=20% Similarity=0.169 Sum_probs=34.2
Q ss_pred CCeeEEEEEeCCchhHHHHHHhhh-cCCcCeeEEEEEeCCCCC--------CCchHHHHHHHcCCCEEEEc
Q 020794 127 PKYKVAVLASKQEHCLVDFLYGWQ-EGKLPVEITCVISNHDRG--------PNSHVIRFLERHGIPYHYLC 188 (321)
Q Consensus 127 ~~~rIavl~S~~g~~l~~lL~~~~-~~~l~~~i~~Vis~~~~~--------~~~~v~~~a~~~gIP~~~~~ 188 (321)
.++|++|+|+|+.. +.+....+ ++....++++++.+.+.. ....+.+++++++|....+.
T Consensus 142 ~~rrVLIvGaG~~g--~~l~~~L~~~~~~g~~vVGfiDdd~~~g~~VpvlG~~~dL~~~v~~~~IdeViIA 210 (463)
T PRK10124 142 NKRMVAVAGDLPAG--QMLLESFRNEPWLGFEVVGVYHDPKPGGVSNDWAGNLQQLVEDAKAGKIHNVYIA 210 (463)
T ss_pred CCCcEEEEECCHHH--HHHHHHHhcCccCCeEEEEEEeCCccccCCCCcCCCHHHHHHHHHhCCCCEEEEe
Confidence 35689998877642 23333332 334568899988754311 00234556677777766554
No 311
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=36.58 E-value=2.7e+02 Score=27.61 Aligned_cols=77 Identities=19% Similarity=0.325 Sum_probs=48.7
Q ss_pred eeEEEEEeCCc--hhHHHHHHhhhcCCcCeeEEEEEeCCCCCCCchHHHHHHHcCCCEEEEcCCc-c---------hhHH
Q 020794 129 YKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKE-N---------EREE 196 (321)
Q Consensus 129 ~rIavl~S~~g--~~l~~lL~~~~~~~l~~~i~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~~~~-~---------~~~~ 196 (321)
|||.|=+.... +-++.++..+++. .++|. +|.++. ..+.+.++.+|+++..+.... + .|..
T Consensus 1 MkIwiDi~~p~hvhfFk~~I~eL~~~--GheV~--it~R~~---~~~~~LL~~yg~~y~~iG~~g~~~~~Kl~~~~~R~~ 73 (335)
T PF04007_consen 1 MKIWIDITHPAHVHFFKNIIRELEKR--GHEVL--ITARDK---DETEELLDLYGIDYIVIGKHGDSLYGKLLESIERQY 73 (335)
T ss_pred CeEEEECCCchHHHHHHHHHHHHHhC--CCEEE--EEEecc---chHHHHHHHcCCCeEEEcCCCCCHHHHHHHHHHHHH
Confidence 57777776555 3467777776553 25654 344432 357889999999999887432 1 2234
Q ss_pred HHHHHhc--CCCEEEEEe
Q 020794 197 ELLELVQ--NTDFLVLAR 212 (321)
Q Consensus 197 ~~~~~l~--~~Dlivlag 212 (321)
++.+++. +||+++..+
T Consensus 74 ~l~~~~~~~~pDv~is~~ 91 (335)
T PF04007_consen 74 KLLKLIKKFKPDVAISFG 91 (335)
T ss_pred HHHHHHHhhCCCEEEecC
Confidence 5555554 799998543
No 312
>PRK14444 acylphosphatase; Provisional
Probab=36.54 E-value=1.5e+02 Score=23.72 Aligned_cols=57 Identities=7% Similarity=-0.041 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHhhhccceeeeCCCCCCeeEEEEEeCCchhHHHHHHhhhcCCcCeeEEEEE
Q 020794 102 MDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVI 162 (321)
Q Consensus 102 L~~~L~~la~~lg~~~~~~r~~~~~~~~rIavl~S~~g~~l~~lL~~~~~~~l~~~i~~Vi 162 (321)
++-....+|.++|+.-|--+.. .-.|-+.+.|+...++.+++.++++...++|..+-
T Consensus 19 FR~~v~~~A~~lgl~G~V~N~~----dG~Vei~~qG~~~~i~~f~~~l~~gp~~a~V~~i~ 75 (92)
T PRK14444 19 FRAYTRDRAREAGVKGWVRNLS----DGRVEAVFEGSRPAVQKMISWCYSGPSHARVERVE 75 (92)
T ss_pred cHHHHHHHHHHhCCEEEEEECC----CCcEEEEEEcCHHHHHHHHHHHHhCCCCcEEEEEE
Confidence 3566677888999876633332 23577888999899999999988776567777653
No 313
>TIGR00166 S6 ribosomal protein S6. MRP17 protein is a component of the small ribosomal subunit in mitochondria, and is shown here to be an ortholog of S6.
Probab=36.36 E-value=1.7e+02 Score=23.10 Aligned_cols=41 Identities=12% Similarity=0.254 Sum_probs=29.2
Q ss_pred cchHHHHHHHHHhcCCeEeEeeeec---------cCCCCeEEEEEEEEeCC
Q 020794 53 VGIVAKLSECIASRGGNILAADVFV---------PEKKNVFYSRSEFIFDP 94 (321)
Q Consensus 53 ~GIVA~VS~~La~~G~NI~d~~q~~---------~~l~g~F~Mr~~v~~~~ 94 (321)
.+++..+.+.+.++||.|..++.-. ...+|.|+ .+.++.++
T Consensus 18 ~~~~~~~~~~i~~~gg~i~~~~~~G~r~LaY~I~k~~~G~Y~-~~~f~~~~ 67 (93)
T TIGR00166 18 KGQIERYKKVITLNGAEIVRSEDWGKRRLAYPIKKQLRAHYV-LMNFSGEA 67 (93)
T ss_pred HHHHHHHHHHHHhCCCEEEEEEeecceecceEcCCCceEEEE-EEEEEeCH
Confidence 5778888889999999999877553 12456555 56676653
No 314
>PRK13936 phosphoheptose isomerase; Provisional
Probab=36.26 E-value=2.9e+02 Score=24.76 Aligned_cols=55 Identities=15% Similarity=0.210 Sum_probs=34.5
Q ss_pred CeeEEEEEeCCCCCCC-chHHHHHHHcCCCEEEEcCCcchhHHHHHHHhcCCCEEEEEe
Q 020794 155 PVEITCVISNHDRGPN-SHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDFLVLAR 212 (321)
Q Consensus 155 ~~~i~~Vis~~~~~~~-~~v~~~a~~~gIP~~~~~~~~~~~~~~~~~~l~~~Dlivlag 212 (321)
+.+++.+||+..+.++ ....+.|+++|+|+..+....+ ..+.++...+|+.+...
T Consensus 111 ~~Dv~i~iS~sG~t~~~~~~~~~ak~~g~~iI~IT~~~~---s~l~~l~~~ad~~l~v~ 166 (197)
T PRK13936 111 PGDVLLAISTSGNSANVIQAIQAAHEREMHVVALTGRDG---GKMASLLLPEDVEIRVP 166 (197)
T ss_pred CCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEECCCC---ChhhhhhccCCEEEEeC
Confidence 4678888887643222 2468889999999998764322 12444333577776543
No 315
>PRK14445 acylphosphatase; Provisional
Probab=36.26 E-value=1.2e+02 Score=24.09 Aligned_cols=59 Identities=14% Similarity=0.128 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHhhhccceeeeCCCCCCeeEEEEEeCCchhHHHHHHhhhcCCcCeeEEEEEeC
Q 020794 102 MDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISN 164 (321)
Q Consensus 102 L~~~L~~la~~lg~~~~~~r~~~~~~~~rIavl~S~~g~~l~~lL~~~~~~~l~~~i~~Vis~ 164 (321)
++.-...+|.++|+.-|-.+..+ -+|-+.+.|+...++++++.+++|...+.|..+-..
T Consensus 19 FR~~v~~~A~~~gl~G~V~N~~d----G~Vei~~qG~~~~l~~f~~~l~~gP~~a~V~~i~~~ 77 (91)
T PRK14445 19 FRMFIDRAASELNLSGWVRNLPD----GTVEIEAQGSSGMIDELIKQAERGPSRSSVTSIMVE 77 (91)
T ss_pred ChHHHHHHHhhCCCEEEEEECCC----CeEEEEEEECHHHHHHHHHHHHhCCCCcEEEEEEEE
Confidence 34556778888998766433322 357788888888899999998877655777766544
No 316
>PRK14427 acylphosphatase; Provisional
Probab=36.09 E-value=1.3e+02 Score=24.10 Aligned_cols=58 Identities=14% Similarity=0.076 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHhhhccceeeeCCCCCCeeEEEEEeCCchhHHHHHHhhhcCCcCeeEEEEEe
Q 020794 102 MDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVIS 163 (321)
Q Consensus 102 L~~~L~~la~~lg~~~~~~r~~~~~~~~rIavl~S~~g~~l~~lL~~~~~~~l~~~i~~Vis 163 (321)
++--...+|.++|+.-|-.+..+ -.|-+.+.|....++++++.++++..++.|..+-.
T Consensus 21 FR~fv~~~A~~lgl~G~V~N~~d----GsVei~~qG~~~~i~~f~~~l~~~p~~a~V~~i~~ 78 (94)
T PRK14427 21 FRYWTMRKAEELGLTGTVRNLDD----GSVALVAEGTGEQVEKLLDWLNSDRAPGRVERVDH 78 (94)
T ss_pred ChHHHHHHHHHcCCEEEEEECCC----CeEEEEEEECHHHHHHHHHHHhhCCCCcEEEEEEE
Confidence 34556677888998776443332 36778888888889999999988855677776544
No 317
>PRK14437 acylphosphatase; Provisional
Probab=35.88 E-value=1.3e+02 Score=24.99 Aligned_cols=58 Identities=14% Similarity=0.065 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHhhhccceeeeCCCCCCeeEEEEEeCCchhHHHHHHhhhcCCcCeeEEEEEe
Q 020794 102 MDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVIS 163 (321)
Q Consensus 102 L~~~L~~la~~lg~~~~~~r~~~~~~~~rIavl~S~~g~~l~~lL~~~~~~~l~~~i~~Vis 163 (321)
++--...+|.++|+.-|-.+..+ -+|-+.+.|....++++++.+++|...++|.-|-.
T Consensus 38 FR~fv~~~A~~lgL~G~V~N~~d----G~Vei~~qG~~~~ie~f~~~L~~gP~~a~V~~i~~ 95 (109)
T PRK14437 38 FRESVRKKAEELQLTGWVKNLSH----GDVELVACGERDSIMILTEWLWEGPPQAAVSNVNW 95 (109)
T ss_pred chHHHHHHHHHhCCeEEEEECCC----CCEEEEEEECHHHHHHHHHHHHhCCCceEEEEEEE
Confidence 45666778899998776443332 36888888888899999999887765577766543
No 318
>PRK11391 etp phosphotyrosine-protein phosphatase; Provisional
Probab=35.70 E-value=1.4e+02 Score=25.57 Aligned_cols=79 Identities=11% Similarity=0.101 Sum_probs=41.4
Q ss_pred eeEEEEEeCCc--hh-HHHHHHhhhcCCcCeeEEEEEeCCCCCCCchHHHHHHHcCCCEEEEcCCcchhHHHHHHHhcCC
Q 020794 129 YKVAVLASKQE--HC-LVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNT 205 (321)
Q Consensus 129 ~rIavl~S~~g--~~-l~~lL~~~~~~~l~~~i~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~~~~~l~~~ 205 (321)
+||.|+..|+- |. .++++..... .+.+.=+++......+.+....+.++++||+......+ .. +++. +.++
T Consensus 3 ~~ILfVC~gN~cRSpmAEa~~~~~~~-~~~v~SaG~~~~~g~~~~~~a~~~l~~~Gid~~~h~s~-~l-t~~~---~~~~ 76 (144)
T PRK11391 3 NSILVVCTGNICRSPIGERLLRKRLP-GVKVKSAGVHGLVKHPADATAADVAANHGVSLEGHAGR-KL-TAEM---ARNY 76 (144)
T ss_pred CeEEEEcCCcHhHHHHHHHHHHHhcC-CeEEEcccccCCCCCCCCHHHHHHHHHcCCCcCCCccC-cC-CHHH---HhhC
Confidence 58888777764 33 4556654322 22223233332112223567888999999986421111 01 1222 2378
Q ss_pred CEEEEEee
Q 020794 206 DFLVLARY 213 (321)
Q Consensus 206 Dlivlag~ 213 (321)
|+|++..-
T Consensus 77 DlIl~M~~ 84 (144)
T PRK11391 77 DLILAMES 84 (144)
T ss_pred CEEEECCH
Confidence 99987643
No 319
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=35.54 E-value=2.6e+02 Score=25.45 Aligned_cols=54 Identities=13% Similarity=0.126 Sum_probs=34.0
Q ss_pred eeEEEEEeCCCCCCC-chHHHHHHHcCCCEEEEcCCcchhHHHHHHHhcCCCEEEEEe
Q 020794 156 VEITCVISNHDRGPN-SHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDFLVLAR 212 (321)
Q Consensus 156 ~~i~~Vis~~~~~~~-~~v~~~a~~~gIP~~~~~~~~~~~~~~~~~~l~~~Dlivlag 212 (321)
.++..++|+.-+.++ ....+.|+++|+|+..+....+ ..+.+++..+|+.+...
T Consensus 110 gDvli~iS~SG~s~~v~~a~~~Ak~~G~~vI~IT~~~~---s~l~~l~~~~D~~i~ip 164 (196)
T PRK10886 110 GDVLLAISTRGNSRDIVKAVEAAVTRDMTIVALTGYDG---GELAGLLGPQDVEIRIP 164 (196)
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCC---ChhhhccccCCEEEEcC
Confidence 477777877633222 3568899999999998874322 23444443578777543
No 320
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=35.45 E-value=1.8e+02 Score=27.23 Aligned_cols=62 Identities=11% Similarity=0.029 Sum_probs=44.7
Q ss_pred EEEEEcCCccchHHHHHHHHHhcCCeEeEeeeec-cCCCCeEEEEEEEEeCCCCCChHHHHHHHH
Q 020794 44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFV-PEKKNVFYSRSEFIFDPIKWPREQMDEDFF 107 (321)
Q Consensus 44 Iltv~G~Dr~GIVA~VS~~La~~G~NI~d~~q~~-~~l~g~F~Mr~~v~~~~~~~~~~~L~~~L~ 107 (321)
-+++--.|=..-+.++.+.+.++||.|...++.. ...++.-.+.+.+.+|.. .++.+.+.|.
T Consensus 53 ~l~lev~d~~~a~~~i~~~~~~~gG~i~~~~~~~~~~~~~~~~~~ltiRVP~~--~~~~~l~~l~ 115 (262)
T PF14257_consen 53 DLSLEVKDVEKAVKKIENLVESYGGYIESSSSSSSGGSDDERSASLTIRVPAD--KFDSFLDELS 115 (262)
T ss_pred EEEEEECCHHHHHHHHHHHHHHcCCEEEEEeeecccCCCCcceEEEEEEECHH--HHHHHHHHHh
Confidence 5678889999999999999999999999988851 122455566788888752 3444444444
No 321
>PRK14438 acylphosphatase; Provisional
Probab=35.27 E-value=1.3e+02 Score=23.93 Aligned_cols=58 Identities=14% Similarity=0.094 Sum_probs=41.6
Q ss_pred HHHHHHHHHHhhhccceeeeCCCCCCeeEEEEEeCCchhHHHHHHhhhcCCcCeeEEEEEeC
Q 020794 103 DEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISN 164 (321)
Q Consensus 103 ~~~L~~la~~lg~~~~~~r~~~~~~~~rIavl~S~~g~~l~~lL~~~~~~~l~~~i~~Vis~ 164 (321)
+.-...+|.++|+.-|-.+.+ .-.|-+.+.|+...++++++.+++|...+.|..+...
T Consensus 19 R~~~~~~A~~~gl~G~V~N~~----dG~Vei~~qG~~~~i~~f~~~l~~gp~~a~V~~v~~~ 76 (91)
T PRK14438 19 RHHTQQTAQRLNVSGWVKNLP----NGSVQGCFEGEETDVAALIDWCHHGPSRARVSGVIVE 76 (91)
T ss_pred cHHHHHHHHHcCCEEEEEECC----CCEEEEEEEECHHHHHHHHHHHhhCCCCcEEEEEEEE
Confidence 455667888999877644333 2367788888888899999998877655777766543
No 322
>PRK06372 translation initiation factor IF-2B subunit delta; Provisional
Probab=35.24 E-value=1.7e+02 Score=27.97 Aligned_cols=69 Identities=14% Similarity=0.207 Sum_probs=36.3
Q ss_pred EEEEeCCchhHHHHHHhhhcCCcCeeEEEEEeCCCCCCCchHHHHHHHcCCCEEEEcCCcchhHHHHHHHhcCCCEEEE
Q 020794 132 AVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDFLVL 210 (321)
Q Consensus 132 avl~S~~g~~l~~lL~~~~~~~l~~~i~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~~~~~l~~~Dlivl 210 (321)
+|+.-+..+.++.+|...+.+ ..|. |.-+++...+....+...++|||+.+++. ..+...+.++|.+++
T Consensus 89 vILT~s~S~~v~~~l~~~~~~---~~V~-v~ESrP~~eG~~~a~~L~~~GI~vtli~D------sa~~~~m~~vd~Vlv 157 (253)
T PRK06372 89 VIGTISSSQVLKAFISSSEKI---KSVY-ILESRPMLEGIDMAKLLVKSGIDVVLLTD------ASMCEAVLNVDAVIV 157 (253)
T ss_pred EEEEeCCcHHHHHHHHhcCCC---CEEE-EecCCCchHHHHHHHHHHHCCCCEEEEeh------hHHHHHHHhCCEEEE
Confidence 344444667788887543211 2332 33334332233445556678999998762 123333446777665
No 323
>PRK09084 aspartate kinase III; Validated
Probab=35.09 E-value=2.3e+02 Score=28.96 Aligned_cols=35 Identities=11% Similarity=0.102 Sum_probs=30.4
Q ss_pred cEEEEEEcC---CccchHHHHHHHHHhcCCeEeEeeee
Q 020794 42 HGIHVFHCP---DEVGIVAKLSECIASRGGNILAADVF 76 (321)
Q Consensus 42 ~~Iltv~G~---Dr~GIVA~VS~~La~~G~NI~d~~q~ 76 (321)
-.++++.|. +.+|+.++|-+.|+++|+||.-++|.
T Consensus 306 i~lItv~~~~~~~~~g~~a~if~~l~~~~I~Vd~I~ss 343 (448)
T PRK09084 306 QTLLTLHSLNMLHARGFLAEVFGILARHKISVDLITTS 343 (448)
T ss_pred EEEEEEecCCCCccccHHHHHHHHHHHcCCeEEEEecc
Confidence 357888876 68899999999999999999999874
No 324
>PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium [].
Probab=35.04 E-value=1.3e+02 Score=27.72 Aligned_cols=66 Identities=17% Similarity=0.335 Sum_probs=51.1
Q ss_pred chHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHHHHHhhhccceeeeCCCCCCeeEEE
Q 020794 54 GIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAV 133 (321)
Q Consensus 54 GIVA~VS~~La~~G~NI~d~~q~~~~l~g~F~Mr~~v~~~~~~~~~~~L~~~L~~la~~lg~~~~~~r~~~~~~~~rIav 133 (321)
++-..+++.|+++|+.++-++.- -+|- . .-+.++...+++.+.+.+.. +| .+.|+++
T Consensus 16 ~~d~~~a~~l~~~G~~VvGvdsl-----~Yfw-------~--~rtP~~~a~Dl~~~i~~y~~-~w--------~~~~vvL 72 (192)
T PF06057_consen 16 DLDKQIAEALAKQGVPVVGVDSL-----RYFW-------S--ERTPEQTAADLARIIRHYRA-RW--------GRKRVVL 72 (192)
T ss_pred hhhHHHHHHHHHCCCeEEEechH-----HHHh-------h--hCCHHHHHHHHHHHHHHHHH-Hh--------CCceEEE
Confidence 77788999999999999999763 2333 1 23679999999999988853 33 4579999
Q ss_pred EEeCCchhH
Q 020794 134 LASKQEHCL 142 (321)
Q Consensus 134 l~S~~g~~l 142 (321)
++...|...
T Consensus 73 iGYSFGADv 81 (192)
T PF06057_consen 73 IGYSFGADV 81 (192)
T ss_pred EeecCCchh
Confidence 999999753
No 325
>PF11071 DUF2872: Protein of unknown function (DUF2872); InterPro: IPR019884 This entry represents a family of uncharacterised proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=34.97 E-value=1.6e+02 Score=25.84 Aligned_cols=99 Identities=20% Similarity=0.328 Sum_probs=53.0
Q ss_pred HHHHHhhhcCCcCeeEEEEEeCCCCCCCchHHHHHHHcCCCEEEEcCCcc-hhHHHHHHHhcCCCEEEEEeeccccchhh
Q 020794 143 VDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKEN-EREEELLELVQNTDFLVLARYMQPVPLQK 221 (321)
Q Consensus 143 ~~lL~~~~~~~l~~~i~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~~~~~-~~~~~~~~~l~~~Dlivlag~~~~~~~~~ 221 (321)
+.+.+.++...||.+.++-+++|++.-++.+ +..-...=++.. +++.+ .+.-....+++++|++| ++|+-
T Consensus 12 e~I~~ga~~~~L~v~F~~PvtdH~~SD~~G~-~iLG~e~~~fw~-D~k~a~iN~iRT~~li~~aDvVV-vrFGe------ 82 (141)
T PF11071_consen 12 EEIKEGAKAAGLPVEFTSPVTDHEASDDCGV-DILGEEPNKFWR-DHKGAKINAIRTRTLIEKADVVV-VRFGE------ 82 (141)
T ss_pred HHHHHHHHHcCCCeEEecCCCCchhhhhhhH-HHhCCCCccccc-cchhhhhhHHHHHHHHhhCCEEE-EEech------
Confidence 3466777777899999999999865322222 222111122221 23221 11112233444899885 56753
Q ss_pred HhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeEEecCCCC
Q 020794 222 EAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLL 267 (321)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~il~~~~l~~~~~~~INiHpslL 267 (321)
-|--|..+ +..........+.|-+||--+
T Consensus 83 -kYKQWNaA----------------fDAg~a~AlgKplI~lh~~~~ 111 (141)
T PF11071_consen 83 -KYKQWNAA----------------FDAGYAAALGKPLITLHPEEL 111 (141)
T ss_pred -HHHHHHHH----------------hhHHHHHHcCCCeEEecchhc
Confidence 44445222 344455666778899998543
No 326
>PRK14451 acylphosphatase; Provisional
Probab=34.91 E-value=1.5e+02 Score=23.55 Aligned_cols=59 Identities=20% Similarity=0.209 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHhhhccceeeeCCCCCCeeEEEEEeCCchhHHHHHHhhhcCCcCeeEEEEEeC
Q 020794 102 MDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISN 164 (321)
Q Consensus 102 L~~~L~~la~~lg~~~~~~r~~~~~~~~rIavl~S~~g~~l~~lL~~~~~~~l~~~i~~Vis~ 164 (321)
++--...+|.++|+.-|-.+..+ -+|-+.+.|+...++++++.+++|...+.|.-|-..
T Consensus 18 FR~~~~~~A~~~gl~G~V~N~~d----G~Vei~~qG~~~~i~~f~~~l~~gp~~a~V~~v~~~ 76 (89)
T PRK14451 18 FRASAKKLAEQLMISGWARNLAD----GRVEVFACGKEDKLEEFYTWLQKGPLNARVDVCTRE 76 (89)
T ss_pred chHHHHHHHHHhCCEEEEEECCC----CCEEEEEEECHHHHHHHHHHHhhCCCceEEEEEEEE
Confidence 34556678889998776544433 358888888888899999998877655777665443
No 327
>PRK14441 acylphosphatase; Provisional
Probab=34.88 E-value=1.4e+02 Score=23.87 Aligned_cols=58 Identities=10% Similarity=0.064 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHhhhccceeeeCCCCCCeeEEEEEeCCchhHHHHHHhhhcCCcCeeEEEEEe
Q 020794 102 MDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVIS 163 (321)
Q Consensus 102 L~~~L~~la~~lg~~~~~~r~~~~~~~~rIavl~S~~g~~l~~lL~~~~~~~l~~~i~~Vis 163 (321)
++--...+|.++|+.-|-.+.. .-+|-+.+.|....++.+++.+++|...++|..+-.
T Consensus 20 FR~~v~~~A~~lgL~G~V~N~~----dG~Vei~~qG~~~~i~~f~~~l~~gp~~a~V~~v~~ 77 (93)
T PRK14441 20 FRQSAADEARRLGVEGWVRNLP----DGRVEAEAEGERAAVGALVRWCHAGPPAARVDRVEV 77 (93)
T ss_pred chHHHHHHHhhcCcEEEEEECC----CCEEEEEEEECHHHHHHHHHHHhhCCCCcEEEEEEE
Confidence 3455667788899877643332 236778888888899999999887765677776543
No 328
>PF01784 NIF3: NIF3 (NGG1p interacting factor 3); InterPro: IPR002678 This family contains several NIF3 (NGG1p interacting factor 3) protein homologues. NIF3 interacts with the yeast transcriptional coactivator NGG1p which is part of the ADA complex, the exact function of this interaction is unknown [][].; PDB: 1NMO_F 1NMP_B 2GX8_C 2FYW_B 2NYD_A 3LNL_A 2YYB_A 3RXY_F.
Probab=34.83 E-value=1.1e+02 Score=28.39 Aligned_cols=84 Identities=15% Similarity=0.031 Sum_probs=43.3
Q ss_pred EEEeCCCCCChHHHHHHHHHHHHHhhhccceeeeC--CCCCCeeEEEEEeCCch-hHHHHHHhhhcCCcCeeEEEEEeCC
Q 020794 89 EFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRVP--DIDPKYKVAVLASKQEH-CLVDFLYGWQEGKLPVEITCVISNH 165 (321)
Q Consensus 89 ~v~~~~~~~~~~~L~~~L~~la~~lg~~~~~~r~~--~~~~~~rIavl~S~~g~-~l~~lL~~~~~~~l~~~i~~Vis~~ 165 (321)
..++++ +.+.++|.+.++ +.++... +|+. ...+..|||+++ |.|. .+...++ .| ++ ++||-.
T Consensus 135 i~~l~~-~~s~~el~~~vk---~~l~~~~--vr~~g~~~~~v~rVav~~-GsG~~~i~~a~~---~g---~D--~~ITGd 199 (241)
T PF01784_consen 135 IGELPE-PMSLEELAERVK---EKLGLPG--VRVVGDPDKKVKRVAVCG-GSGGSFIEEAAE---AG---AD--VYITGD 199 (241)
T ss_dssp EEEEEE-EEEHHHHHHHHH---HHTTSS---EEEESCTTSEEEEEEEEC-SSSGGGHHHHHH---TT---SS--EEEESS
T ss_pred EeecCC-CCCHHHHHHHHH---HHcCCCc--EEecCCCCCcccEEEEEc-ccCccHHHHHHh---CC---Ce--EEEEcc
Confidence 344443 235565555555 4555432 5544 233457888654 5554 3333322 22 23 345543
Q ss_pred CCCCCchHHHHHHHcCCCEEEEcCC
Q 020794 166 DRGPNSHVIRFLERHGIPYHYLCAK 190 (321)
Q Consensus 166 ~~~~~~~v~~~a~~~gIP~~~~~~~ 190 (321)
- .......|+++|+.+..+.+.
T Consensus 200 ~---~~h~~~~a~~~g~~lI~~gH~ 221 (241)
T PF01784_consen 200 I---KYHDAQDAKENGINLIDAGHY 221 (241)
T ss_dssp -----HHHHHHHHHCTSEEEE--HH
T ss_pred C---cHHHHHHHHHCCCEEEEcCCH
Confidence 2 345677889999999887764
No 329
>PRK14450 acylphosphatase; Provisional
Probab=34.66 E-value=1.5e+02 Score=23.58 Aligned_cols=59 Identities=15% Similarity=0.147 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHhhhccceeeeCCCCCCeeEEEEEeCCchhHHHHHHhhhcCCcCeeEEEEEe
Q 020794 102 MDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVIS 163 (321)
Q Consensus 102 L~~~L~~la~~lg~~~~~~r~~~~~~~~rIavl~S~~g~~l~~lL~~~~~~~l~~~i~~Vis 163 (321)
++.-...+|.++|+.-|-.+..+ . ..|-+.+.|+...++.+++.+++|...+.|.-|-.
T Consensus 17 FR~~v~~~A~~~~l~G~V~N~~d--G-~~Vei~~~G~~~~v~~f~~~l~~gp~~a~V~~v~~ 75 (91)
T PRK14450 17 FRDFTRTQATRLGLCGYAKNLAN--G-NEVEVVAEGDKDSLLEFLDLLRSGPPRAEVKEVET 75 (91)
T ss_pred cHHHHHHHHHHcCCEEEEEECCC--C-CEEEEEEEeCHHHHHHHHHHHhhCCCCcEEEEEEE
Confidence 35667778889998776433332 1 23777888888889999999887765577766544
No 330
>PF01890 CbiG_C: Cobalamin synthesis G C-terminus; InterPro: IPR002750 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CbiG proteins are specific for anaerobic cobalamin biosynthesis. CbiG, which shows homology with CobE of the aerobic pathway, participates in the conversion of cobalt-precorrin 5 into cobalt-precorrin 6 []. CbiG is responsible for the opening of the delta-lactone ring and extrusion of the C2-unit []. The aerobic pathway uses molecular oxygen to trigger the events at C-20 leading to contraction and expulsion of the C2-unit as acetic acid from a metal-free intermediate, whereas the anaerobic route involves the internal delivery of oxygen from a carboxylic acid terminus to C-20 followed by extrusion of the C2-unit as acetaldehyde, using cobalt complexes as substrates []. This entry represents the core domain of CibG.; GO: 0009236 cobalamin biosynthetic process; PDB: 3BY5_A 2W6K_A 2W6L_A 3EEQ_B.
Probab=34.51 E-value=1.8e+02 Score=24.42 Aligned_cols=55 Identities=16% Similarity=0.311 Sum_probs=31.9
Q ss_pred EEeCCchhHHH----HHHhhhcCCc-CeeEEEEEeCCCCCCCchHHHHHHHcCCCEEEEc
Q 020794 134 LASKQEHCLVD----FLYGWQEGKL-PVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC 188 (321)
Q Consensus 134 l~S~~g~~l~~----lL~~~~~~~l-~~~i~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~ 188 (321)
+|+..+...+. +.+.+++..+ +..|..+.|-..+.....++++|++.|+|+..++
T Consensus 6 iGcrr~~~~~~i~~ai~~~l~~~~~~~~~i~~iasi~~K~~E~~l~~~A~~l~~~~~~~~ 65 (121)
T PF01890_consen 6 IGCRRGAPAEEIEEAIEQALAEAGLSPRSIAAIASIDIKADEPGLLELAEELGIPLRFFS 65 (121)
T ss_dssp EEE-SS--HHHHHHHHHHHHHHCT--GGGEEEEEESSSSS--HHHHHHHHHCTSEEEEE-
T ss_pred eCcCCCCCHHHHHHHHHHHHHHcCCChhhccEEEeccccCCCHHHHHHHHHhCCCeEEEC
Confidence 45566643333 2233444444 4677777776544345688999999999999886
No 331
>smart00226 LMWPc Low molecular weight phosphatase family.
Probab=34.26 E-value=1.2e+02 Score=25.18 Aligned_cols=76 Identities=11% Similarity=0.191 Sum_probs=39.5
Q ss_pred EEEeCCchh----HHHHHHhhhcCCcCeeEEEEEeCCCCCCCchHHHHHHHcCCCEEEEcCCcchhHHHHHHHhcCCCEE
Q 020794 133 VLASKQEHC----LVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDFL 208 (321)
Q Consensus 133 vl~S~~g~~----l~~lL~~~~~~~l~~~i~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~~~~~l~~~Dli 208 (321)
+|++...+| .++++.....+.+.+.=+++......+.+....+.++++||+...... ... ++ .+.+.|+|
T Consensus 2 LFVC~~N~cRSpmAEa~~~~~~~~~~~v~SAG~~~~~g~~~~~~a~~~l~~~Gid~~~~~~--~l~-~~---~~~~~DlI 75 (140)
T smart00226 2 LFVCTGNICRSPMAEALFKAIVGDRVKIDSAGTGAWVGGGADPRAVEVLKEHGIALSHHAS--QLT-SS---DFKNADLV 75 (140)
T ss_pred EEEeCChhhhHHHHHHHHHHhcCCCEEEEcCcccCCCCCCCCHHHHHHHHHcCcCccceec--cCC-HH---HHHhCCEE
Confidence 455554443 455666543332222223333222233466788999999999643211 111 11 23379999
Q ss_pred EEEeec
Q 020794 209 VLARYM 214 (321)
Q Consensus 209 vlag~~ 214 (321)
|+..-.
T Consensus 76 v~m~~~ 81 (140)
T smart00226 76 LAMDHS 81 (140)
T ss_pred EEeCHH
Confidence 987543
No 332
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=34.23 E-value=2.3e+02 Score=22.21 Aligned_cols=43 Identities=14% Similarity=0.314 Sum_probs=27.0
Q ss_pred HHHHHHHcCCCEEEEcCCcchhHHHHHHHhc--CCCEEEEEeecc
Q 020794 173 VIRFLERHGIPYHYLCAKENEREEELLELVQ--NTDFLVLARYMQ 215 (321)
Q Consensus 173 v~~~a~~~gIP~~~~~~~~~~~~~~~~~~l~--~~Dlivlag~~~ 215 (321)
..+.+++.|+++...........+++.+..+ ++|++|+..-.+
T Consensus 61 ~~~~~~~~g~~~~~~~~~~~~~~~~I~~~a~~~~~dlIV~G~~~~ 105 (132)
T cd01988 61 AERIAASLGVPVHTIIRIDHDIASGILRTAKERQADLIIMGWHGS 105 (132)
T ss_pred HHHHhhhcCCceEEEEEecCCHHHHHHHHHHhcCCCEEEEecCCC
Confidence 4556677899876543211123356777665 799998876554
No 333
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=34.21 E-value=1.6e+02 Score=24.36 Aligned_cols=31 Identities=35% Similarity=0.514 Sum_probs=20.4
Q ss_pred HHHHHHHcCCCEEEEcCCcchhHHHHHHHhc
Q 020794 173 VIRFLERHGIPYHYLCAKENEREEELLELVQ 203 (321)
Q Consensus 173 v~~~a~~~gIP~~~~~~~~~~~~~~~~~~l~ 203 (321)
..+.|++.||.+..+.-..+..++++.+.++
T Consensus 50 k~k~~~~~Gi~~~~~~l~~~~~~~el~~~i~ 80 (117)
T PF00763_consen 50 KQKAAEKLGIEFELIELPEDISEEELLELIE 80 (117)
T ss_dssp HHHHHHHHT-EEEEEEE-TTSSHHHHHHHHH
T ss_pred HHHHHHHcCCceEEEECCCCcCHHHHHHHHH
Confidence 3688999999998765333445667777664
No 334
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=34.02 E-value=2e+02 Score=25.73 Aligned_cols=70 Identities=14% Similarity=0.145 Sum_probs=38.0
Q ss_pred HHHHHHhhhcCCcCeeEEEEEeCCCCC----CCchHHHHHHHcCCCEEEEcCCcchhHHHHHHHhc------CCCEEEEE
Q 020794 142 LVDFLYGWQEGKLPVEITCVISNHDRG----PNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ------NTDFLVLA 211 (321)
Q Consensus 142 l~~lL~~~~~~~l~~~i~~Vis~~~~~----~~~~v~~~a~~~gIP~~~~~~~~~~~~~~~~~~l~------~~Dlivla 211 (321)
+++.++.+++.- +.+=++|+||.... ....+..+.+..|||+.....+.-..-+++++.+. +++-+++.
T Consensus 64 ~~~~~~~l~~~~-~~~~v~IvSNsaGs~~d~~~~~a~~~~~~lgIpvl~h~~kKP~~~~~i~~~~~~~~~~~~p~eiavI 142 (168)
T PF09419_consen 64 YAEWLNELKKQF-GKDRVLIVSNSAGSSDDPDGERAEALEKALGIPVLRHRAKKPGCFREILKYFKCQKVVTSPSEIAVI 142 (168)
T ss_pred HHHHHHHHHHHC-CCCeEEEEECCCCcccCccHHHHHHHHHhhCCcEEEeCCCCCccHHHHHHHHhhccCCCCchhEEEE
Confidence 455556555421 22235588886311 12456778889999987555322222345666653 26555555
Q ss_pred e
Q 020794 212 R 212 (321)
Q Consensus 212 g 212 (321)
|
T Consensus 143 G 143 (168)
T PF09419_consen 143 G 143 (168)
T ss_pred c
Confidence 4
No 335
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=34.00 E-value=3e+02 Score=26.34 Aligned_cols=65 Identities=14% Similarity=0.130 Sum_probs=33.5
Q ss_pred CeeEEEEEeCC-chhHHHHHHhhhcCCcCeeEEEEEeCCCCCCCchHHHHHHHcCCCEEEEcCCcchhHHHHHHHhcCCC
Q 020794 128 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTD 206 (321)
Q Consensus 128 ~~rIavl~S~~-g~~l~~lL~~~~~~~l~~~i~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~~~~~l~~~D 206 (321)
.+|++|++.|. |..+...|.. .| .+|. +.++.. .-.+.+.+.|..... .+++.+.+.++|
T Consensus 151 gk~v~IiG~G~iG~avA~~L~~--~G---~~V~--v~~R~~----~~~~~~~~~g~~~~~--------~~~l~~~l~~aD 211 (287)
T TIGR02853 151 GSNVMVLGFGRTGMTIARTFSA--LG---ARVF--VGARSS----ADLARITEMGLIPFP--------LNKLEEKVAEID 211 (287)
T ss_pred CCEEEEEcChHHHHHHHHHHHH--CC---CEEE--EEeCCH----HHHHHHHHCCCeeec--------HHHHHHHhccCC
Confidence 46899999876 3333333332 12 4544 334421 123334455543221 124555666899
Q ss_pred EEEEE
Q 020794 207 FLVLA 211 (321)
Q Consensus 207 livla 211 (321)
+++.+
T Consensus 212 iVint 216 (287)
T TIGR02853 212 IVINT 216 (287)
T ss_pred EEEEC
Confidence 99875
No 336
>PRK01018 50S ribosomal protein L30e; Reviewed
Probab=33.99 E-value=54 Score=26.58 Aligned_cols=48 Identities=17% Similarity=0.240 Sum_probs=27.5
Q ss_pred EEeCCchhHHHHHHhhhcCCcCeeEEEEEeCCCCCCCchHHHHHHHcCCCEEEE
Q 020794 134 LASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYL 187 (321)
Q Consensus 134 l~S~~g~~l~~lL~~~~~~~l~~~i~~Vis~~~~~~~~~v~~~a~~~gIP~~~~ 187 (321)
+++|...+++++ ++|+ +..+.+-+|-+......+..+|++++||++.+
T Consensus 17 l~~G~~~v~kai----~~gk--aklViiA~D~~~~~~~~i~~~c~~~~Ip~~~~ 64 (99)
T PRK01018 17 VILGSKRTIKAI----KLGK--AKLVIVASNCPKDIKEDIEYYAKLSGIPVYEY 64 (99)
T ss_pred EEEcHHHHHHHH----HcCC--ceEEEEeCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 455655555544 4453 44443333322111247789999999998765
No 337
>PRK05234 mgsA methylglyoxal synthase; Validated
Probab=33.91 E-value=3.1e+02 Score=23.68 Aligned_cols=33 Identities=9% Similarity=0.040 Sum_probs=22.2
Q ss_pred CCcccEEEEEEcCCccchHHHHHHHHHhc--CCeEe
Q 020794 38 PTLTHGIHVFHCPDEVGIVAKLSECIASR--GGNIL 71 (321)
Q Consensus 38 ~~~~~~Iltv~G~Dr~GIVA~VS~~La~~--G~NI~ 71 (321)
+..|++.+++.=.|+.-++ .+.+.+.+. |..|.
T Consensus 2 ~~~~~v~lsv~d~dK~~l~-~~a~~l~~ll~Gf~l~ 36 (142)
T PRK05234 2 PARKRIALIAHDHKKDDLV-AWVKAHKDLLEQHELY 36 (142)
T ss_pred CcCcEEEEEEeccchHHHH-HHHHHHHHHhcCCEEE
Confidence 4567777888877777776 445566666 66654
No 338
>PRK04148 hypothetical protein; Provisional
Probab=33.88 E-value=2.9e+02 Score=23.87 Aligned_cols=51 Identities=12% Similarity=0.065 Sum_probs=35.4
Q ss_pred CCeeEEEEEeCCchhHHHHHHhhhcCCcCeeEEEEEeCCCCCCCchHHHHHHHcCCCEEEEc
Q 020794 127 PKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC 188 (321)
Q Consensus 127 ~~~rIavl~S~~g~~l~~lL~~~~~~~l~~~i~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~ 188 (321)
+.+||+.+|.|.|..+...|.. .| ++|+++=.++ ...+.|+++++.+...+
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~--~G---~~ViaIDi~~------~aV~~a~~~~~~~v~dD 66 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKE--SG---FDVIVIDINE------KAVEKAKKLGLNAFVDD 66 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHH--CC---CEEEEEECCH------HHHHHHHHhCCeEEECc
Confidence 4579999999988766655553 23 6777664333 35778888998887644
No 339
>PRK14428 acylphosphatase; Provisional
Probab=33.03 E-value=1.9e+02 Score=23.63 Aligned_cols=58 Identities=12% Similarity=-0.003 Sum_probs=41.9
Q ss_pred HHHHHHHHHHhhhccceeeeCCCCCCeeEEEEEeCCchhHHHHHHhhhcCCcCeeEEEEEeC
Q 020794 103 DEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISN 164 (321)
Q Consensus 103 ~~~L~~la~~lg~~~~~~r~~~~~~~~rIavl~S~~g~~l~~lL~~~~~~~l~~~i~~Vis~ 164 (321)
+--...+|.++|+.-|-.+..+ -+|-+.+.|....++++++.+++|...+.|.-|...
T Consensus 24 R~fv~~~A~~lgL~G~V~N~~d----GsVei~~qG~~~~i~~fi~~l~~gP~~a~V~~v~~~ 81 (97)
T PRK14428 24 RYFTVTQARRLGVQGWVRNCRD----GSVELEAQGSSDAVQALVEQLAIGPRWSEVSHVAVH 81 (97)
T ss_pred hHHHHHHHHHcCCEEEEEECCC----CEEEEEEEcCHHHHHHHHHHHhhCCCccEEEEEEEE
Confidence 4555667889998776443332 368888899889999999999877655777766544
No 340
>PF10741 T2SM_b: Type II secretion system (T2SS), protein M subtype b; InterPro: IPR007690 General secretion pathway (GSP) protein M is a membrane protein involved in the export of proteins in bacteria. It consists of a short cytosolic N-terminal domain, a transmembrane domain, and a C-terminal periplasmic domain. The precise function of this protein is unknown, though in Vibrio cholerae, the EpsM protein interacts with the EpsL protein, and also forms homodimers [],; GO: 0006858 extracellular transport
Probab=32.94 E-value=2.2e+02 Score=23.01 Aligned_cols=56 Identities=16% Similarity=0.307 Sum_probs=41.4
Q ss_pred chHHHHHHHHHhcCCeEeEeeeeccCCCCeEE-EEEEEEeCCCCCChHHHHHHHHHHHHH
Q 020794 54 GIVAKLSECIASRGGNILAADVFVPEKKNVFY-SRSEFIFDPIKWPREQMDEDFFKLSKM 112 (321)
Q Consensus 54 GIVA~VS~~La~~G~NI~d~~q~~~~l~g~F~-Mr~~v~~~~~~~~~~~L~~~L~~la~~ 112 (321)
.+.+.|...+.++|++|..++-.-....+.|. ..+.+.+.. +.++|..-|..+...
T Consensus 17 ~Lq~~l~~~v~~aG~~v~s~q~~p~~~~~~~~~i~v~~~~~g---~~~~L~~~L~~LE~~ 73 (110)
T PF10741_consen 17 ALQQRLRALVAAAGGQVSSSQVLPPRPDGNFRRISVRVSLEG---DIEALQAFLYALESG 73 (110)
T ss_pred HHHHHHHHHHHHcCCEEEEEEecCCCCCCcceEEEEEEEEEe---CHHHHHHHHHHHhcC
Confidence 46778888999999999998877544555655 444455543 789999999988654
No 341
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=32.91 E-value=1.6e+02 Score=23.23 Aligned_cols=42 Identities=14% Similarity=0.236 Sum_probs=26.9
Q ss_pred CchHHHHHHHcCCCEEEEc--CCcchhHHHHHHHhcCCCEEEEE
Q 020794 170 NSHVIRFLERHGIPYHYLC--AKENEREEELLELVQNTDFLVLA 211 (321)
Q Consensus 170 ~~~v~~~a~~~gIP~~~~~--~~~~~~~~~~~~~l~~~Dlivla 211 (321)
.....+.++++|....... .....+...+...+.++|+||+.
T Consensus 12 ~~~~~~~~~~~G~~~~~hg~~~~~~~~~~~l~~~i~~aD~VIv~ 55 (97)
T PF10087_consen 12 ERRYKRILEKYGGKLIHHGRDGGDEKKASRLPSKIKKADLVIVF 55 (97)
T ss_pred HHHHHHHHHHcCCEEEEEecCCCCccchhHHHHhcCCCCEEEEE
Confidence 3467788889998877662 11122223467777789988653
No 342
>PRK14425 acylphosphatase; Provisional
Probab=32.91 E-value=1.9e+02 Score=23.28 Aligned_cols=58 Identities=9% Similarity=0.059 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHhhhccceeeeCCCCCCeeEEEEEeCCchhHHHHHHhhhcCCcCeeEEEEEe
Q 020794 102 MDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVIS 163 (321)
Q Consensus 102 L~~~L~~la~~lg~~~~~~r~~~~~~~~rIavl~S~~g~~l~~lL~~~~~~~l~~~i~~Vis 163 (321)
++--...+|.++|+.-|-.+.. .-.|-+.+.|....++++++.+++|...++|.-+-.
T Consensus 21 FR~~v~~~A~~~gl~G~V~N~~----dGsVei~~qG~~~~le~f~~~l~~gp~~a~V~~i~~ 78 (94)
T PRK14425 21 FRDWTRDEAERLGLTGWVRNES----DGSVTALIAGPDSAISAMIERFRRGPPGASVSGVET 78 (94)
T ss_pred chHHHHHHHHHhCCEEEEEECC----CCeEEEEEEeCHHHHHHHHHHHhhCCCceEEEEEEE
Confidence 3455667788899877644333 236888888888889999999988765577766543
No 343
>PF01008 IF-2B: Initiation factor 2 subunit family; InterPro: IPR000649 Initiation factor 2 binds to Met-tRNA, GTP and the small ribosomal subunit. The eukaryotic translation initiation factor EIF-2B is a complex made up of five different subunits, alpha, beta, gamma, delta and epsilon, and catalyses the exchange of EIF-2-bound GDP for GTP. This family includes initiation factor 2B alpha, beta and delta subunits from eukaryotes; related proteins from archaebacteria and IF-2 from prokaryotes and also contains a subfamily of proteins in eukaryotes, archaeae (e.g. Pyrococcus furiosus), or eubacteria such as Bacillus subtilis and Thermotoga maritima. Many of these proteins were initially annotated as putative translation initiation factors despite the fact that there is no evidence for the requirement of an IF2 recycling factor in prokaryotic translation initiation. Recently, one of these proteins from B. subtilis has been functionally characterised as a 5-methylthioribose-1-phosphate isomerase (MTNA) []. This enzyme participates in the methionine salvage pathway catalysing the isomerisation of 5-methylthioribose-1-phosphate to 5-methylthioribulose-1-phosphate []. The methionine salvage pathway leads to the synthesis of methionine from methylthioadenosine, the end product of the spermidine and spermine anabolism in many species.; GO: 0044237 cellular metabolic process; PDB: 1VB5_A 1T5O_D 3A11_E 3VM6_C 1W2W_A 1T9K_A 3ECS_B 2YRF_A 2YVK_B 2A0U_A ....
Probab=32.90 E-value=1.1e+02 Score=28.66 Aligned_cols=74 Identities=14% Similarity=0.193 Sum_probs=34.6
Q ss_pred EEEEeCCchhH-HHHHHhhhcCCcCeeEEEEEeCCCCCCCchHHHHHHHcCCCEEEEcCCcchhHHHHHHHhcC-CCEEE
Q 020794 132 AVLASKQEHCL-VDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQN-TDFLV 209 (321)
Q Consensus 132 avl~S~~g~~l-~~lL~~~~~~~l~~~i~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~~~~~l~~-~Dliv 209 (321)
.||.-+..+.+ ..|..+++.|+ ..+|. |+=.++...+....+...+.|||+.+++. ..+...+.+ +|.++
T Consensus 110 ~ILT~~~S~~v~~~l~~a~~~~~-~~~V~-v~es~P~~eG~~~a~~L~~~gi~v~~i~d------~~~~~~m~~~vd~Vl 181 (282)
T PF01008_consen 110 TILTHGYSSTVERFLLSAKKKGK-KFRVI-VLESRPYNEGRLMAKELAEAGIPVTLIPD------SAVGYVMPRDVDKVL 181 (282)
T ss_dssp EEEEES--SHHHHHHHHHHHTTE-EEEEE-EE--TTTTHHHTHHHHHHHTT-EEEEE-G------GGHHHHHHCTESEEE
T ss_pred EEEEeCCchHHHHHHHHHHHcCC-eEEEE-EccCCcchhhhhHHHHhhhcceeEEEEec------hHHHHHHHHhCCeeE
Confidence 34444444444 44555555553 34443 33333322222344555678999998863 134444556 88886
Q ss_pred EEee
Q 020794 210 LARY 213 (321)
Q Consensus 210 lag~ 213 (321)
++.-
T Consensus 182 iGad 185 (282)
T PF01008_consen 182 IGAD 185 (282)
T ss_dssp EE-S
T ss_pred Eeee
Confidence 6543
No 344
>TIGR00268 conserved hypothetical protein TIGR00268. The N-terminal region of the model shows similarity to Argininosuccinate synthase proteins using PSI-blast and using the recognize protein identification server.
Probab=32.83 E-value=1.3e+02 Score=28.01 Aligned_cols=55 Identities=15% Similarity=0.079 Sum_probs=35.8
Q ss_pred eeEEEEEeCCc-h-hHHHHHHhhhcCCcCeeEEEEEeCCCCCC---CchHHHHHHHcCCCEEEEc
Q 020794 129 YKVAVLASKQE-H-CLVDFLYGWQEGKLPVEITCVISNHDRGP---NSHVIRFLERHGIPYHYLC 188 (321)
Q Consensus 129 ~rIavl~S~~g-~-~l~~lL~~~~~~~l~~~i~~Vis~~~~~~---~~~v~~~a~~~gIP~~~~~ 188 (321)
.|++|..||.- | .+..++... | .++.+|..+.+..+ ...+.++|++.|||++.++
T Consensus 13 ~~vlVa~SGGvDSs~ll~la~~~--g---~~v~av~~~~~~~~~~e~~~a~~~a~~lgi~~~ii~ 72 (252)
T TIGR00268 13 KKVLIAYSGGVDSSLLAAVCSDA--G---TEVLAITVVSPSISPRELEDAIIIAKEIGVNHEFVK 72 (252)
T ss_pred CCEEEEecCcHHHHHHHHHHHHh--C---CCEEEEEecCCCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 57999999974 3 344444332 3 45776666553211 1456889999999998876
No 345
>PRK00973 glucose-6-phosphate isomerase; Provisional
Probab=32.83 E-value=1.1e+02 Score=31.67 Aligned_cols=58 Identities=9% Similarity=0.055 Sum_probs=34.2
Q ss_pred CeeEEEEEeCCchhHHHHH------Hhhh-cCC-cCeeEEEEEeCCCCCCCchHHHHHHHcCCCEEEEcC
Q 020794 128 KYKVAVLASKQEHCLVDFL------YGWQ-EGK-LPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCA 189 (321)
Q Consensus 128 ~~rIavl~S~~g~~l~~lL------~~~~-~~~-l~~~i~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~~ 189 (321)
+.-..+.+|++|+.++.+. +.++ .|. ....++ ++|++.. ..+.++|+++|++++.++.
T Consensus 132 ~~Tl~iviSKSGtT~ET~~~f~~~~~~l~~~g~~~~~~~v-aiTd~~~---g~L~~~A~~~g~~~f~ip~ 197 (446)
T PRK00973 132 EKTLFNVISKSGNTAETLANYLIIRGILEKLGLDPKKHLV-FTTDPEK---GKLKKIAEKEGYRTLEIPE 197 (446)
T ss_pred ccEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCccccceEE-EEcCCCc---cchHHHHHHcCCcEEeeCC
Confidence 3345677899996543322 2121 121 123343 6666532 2489999999999988874
No 346
>TIGR00420 trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase. tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (trmU, asuE, or mnmA) is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine (mnm5s2U34) present in the wobble position of some tRNAs. This enzyme appears not to occur in the Archaea.
Probab=32.81 E-value=94 Score=30.85 Aligned_cols=55 Identities=22% Similarity=0.156 Sum_probs=35.3
Q ss_pred eeEEEEEeCCc-h-hHHHHHHhhhcCCcCeeEEEEEeCCC-C----C-----C---CchHHHHHHHcCCCEEEEc
Q 020794 129 YKVAVLASKQE-H-CLVDFLYGWQEGKLPVEITCVISNHD-R----G-----P---NSHVIRFLERHGIPYHYLC 188 (321)
Q Consensus 129 ~rIavl~S~~g-~-~l~~lL~~~~~~~l~~~i~~Vis~~~-~----~-----~---~~~v~~~a~~~gIP~~~~~ 188 (321)
+||+|..||.- | .+..+|.. .| .+|.+|..+.. + . . ...+.+.|++.|||++.++
T Consensus 1 ~kVlValSGGvDSsv~a~lL~~--~G---~~V~~v~~~~~~~~~~~~~~~c~~~~~~~~a~~va~~lgIp~~vid 70 (352)
T TIGR00420 1 KKVIVGLSGGVDSSVSAYLLKQ--QG---YEVVGVFMKNWEEDDKNDGHGCTSAEDLRDAQAICEKLGIPLEKVN 70 (352)
T ss_pred CeEEEEEeCCHHHHHHHHHHHH--cC---CeEEEEEEEcccccccccccCcCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 58999999974 3 34444443 23 58888876321 0 0 0 1245788999999999875
No 347
>TIGR03679 arCOG00187 arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein. This model has the same scope as an archaeal COG (arCOG00187) and is found in all completely sequenced archaea and does not recognize any known non-archaeal genes.
Probab=32.49 E-value=3e+02 Score=25.23 Aligned_cols=18 Identities=22% Similarity=0.100 Sum_probs=14.6
Q ss_pred hHHHHHHHcCCCEEEEcC
Q 020794 172 HVIRFLERHGIPYHYLCA 189 (321)
Q Consensus 172 ~v~~~a~~~gIP~~~~~~ 189 (321)
.+...|+..|||...++-
T Consensus 47 ~~~~~A~~lgip~~~i~~ 64 (218)
T TIGR03679 47 LTRLQAEALGIPLVKIET 64 (218)
T ss_pred HHHHHHHHhCCCEEEEEC
Confidence 457889999999987763
No 348
>PRK07714 hypothetical protein; Provisional
Probab=32.49 E-value=1.7e+02 Score=23.54 Aligned_cols=58 Identities=12% Similarity=0.194 Sum_probs=32.5
Q ss_pred EEeCCchhHHHHHHhhhcCCcCeeEEEEEeCCCCCCCchHHHHHHHcCCCEEEEcCCcchhHHHHHHHh
Q 020794 134 LASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELV 202 (321)
Q Consensus 134 l~S~~g~~l~~lL~~~~~~~l~~~i~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~~~~~l 202 (321)
+++|...+++++ +.|+ +..+.+-++-+......+..+|+.++||+..+.. .+|+-..+
T Consensus 19 ~v~G~~~v~~al----~~g~--~~lViiA~D~s~~~~~ki~~~~~~~~vp~~~~~s-----k~eLG~a~ 76 (100)
T PRK07714 19 VISGEELVLKEV----RSGK--AKLVLLSEDASVNTTKKITDKCTYYNVPMRKVEN-----RQQLGHAI 76 (100)
T ss_pred eeecHHHHHHHH----HhCC--ceEEEEeCCCCHHHHHHHHHHHHhcCCCEEEeCC-----HHHHHHHh
Confidence 455655555444 4453 4444343333221134678889999999987653 24555554
No 349
>COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism]
Probab=32.42 E-value=2e+02 Score=29.45 Aligned_cols=82 Identities=16% Similarity=0.232 Sum_probs=47.4
Q ss_pred eEEEEEeCCchhHHHHHHhhhcCCcCeeEEEEEeCC----CCCCCchHHHHHHHcCCCEEEEcCCcc--hhHHHHHHHhc
Q 020794 130 KVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNH----DRGPNSHVIRFLERHGIPYHYLCAKEN--EREEELLELVQ 203 (321)
Q Consensus 130 rIavl~S~~g~~l~~lL~~~~~~~l~~~i~~Vis~~----~~~~~~~v~~~a~~~gIP~~~~~~~~~--~~~~~~~~~l~ 203 (321)
|+.=.++-+-.-+++.=.++.++ .+-+.-|.+++ ..-+...+.+.|+++|+|+.+=...+. .++..+.+.++
T Consensus 134 ~l~EvG~tn~t~~~d~~~AIne~--ta~llkV~s~~~~f~~~l~~~~l~~ia~~~~lpvivD~aSg~~v~~e~~l~~~la 211 (395)
T COG1921 134 KLVEVGTTNRTHLKDYELAINEN--TALLLKVHSSNYGFTGMLSEEELVEIAHEKGLPVIVDLASGALVDKEPDLREALA 211 (395)
T ss_pred EEEEecccCcCCHHHHHHHhccC--CeeEEEEeeccccccccccHHHHHHHHHHcCCCEEEecCCccccccccchhHHHh
Confidence 34444444444455554444444 24455566664 111234678999999999986322221 13556777776
Q ss_pred -CCCEEEEEee
Q 020794 204 -NTDFLVLARY 213 (321)
Q Consensus 204 -~~Dlivlag~ 213 (321)
++|+++..|=
T Consensus 212 ~GaDLV~~Sgd 222 (395)
T COG1921 212 LGADLVSFSGD 222 (395)
T ss_pred cCCCEEEEecc
Confidence 8999987653
No 350
>PRK13530 arsenate reductase; Provisional
Probab=32.24 E-value=3.1e+02 Score=23.10 Aligned_cols=77 Identities=16% Similarity=0.188 Sum_probs=40.0
Q ss_pred CeeEEEEEeCCc--hhH-HHHHHhhhcCCcCeeEEEEEeCCCCCCCchHHHHHHHcCCCEEEEcCCcchhHHHHHHHhcC
Q 020794 128 KYKVAVLASKQE--HCL-VDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQN 204 (321)
Q Consensus 128 ~~rIavl~S~~g--~~l-~~lL~~~~~~~l~~~i~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~~~~~l~~ 204 (321)
++||.|+..++. |.+ ++++.....+.+.+.=+++- ..+.+..+.+.++++||++.....+ ... ++ .+.+
T Consensus 3 ~~~vLFvC~~N~cRS~mAEal~~~~~~~~~~v~SAG~~---~~~~~~~a~~~l~e~Gi~~~~~~s~-~l~-~~---~~~~ 74 (133)
T PRK13530 3 KKTIYFLCTGNSCRSQMAEGWGKQYLGDKWNVYSAGIE---AHGVNPNAIKAMKEVGIDISNQTSD-IID-ND---ILNN 74 (133)
T ss_pred CCEEEEEcCCchhHHHHHHHHHHHhcCCCEEEECCCCC---CCCCCHHHHHHHHHcCCCcCCCccc-cCC-hh---Hhcc
Confidence 568888887764 333 45665432222111111221 1224567888999999997421111 111 11 1237
Q ss_pred CCEEEEEe
Q 020794 205 TDFLVLAR 212 (321)
Q Consensus 205 ~Dlivlag 212 (321)
.|+||+..
T Consensus 75 ~D~ii~m~ 82 (133)
T PRK13530 75 ADLVVTLC 82 (133)
T ss_pred CCEEEEec
Confidence 89998763
No 351
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=32.21 E-value=2.5e+02 Score=27.65 Aligned_cols=66 Identities=12% Similarity=0.261 Sum_probs=37.1
Q ss_pred CchhHHHHHHhhhcCCcCeeEEEEEe-CCCCCCCchHHHHHHHcCCCEEEEcCCcchhHHHHHHHhcCCCEEEEE
Q 020794 138 QEHCLVDFLYGWQEGKLPVEITCVIS-NHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDFLVLA 211 (321)
Q Consensus 138 ~g~~l~~lL~~~~~~~l~~~i~~Vis-~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~~~~~l~~~Dlivla 211 (321)
..+.+..+|...++.. ..+..+++ .+|+..+....+..+++|||+.++.. ..+...+.++|.+++.
T Consensus 128 ~S~~v~~~l~~A~~~~--k~~~V~VtESRP~~eG~~~ak~L~~~gI~~~~I~D------sa~~~~~~~vd~VivG 194 (301)
T COG1184 128 FSKTVLEVLKTAADRG--KRFKVIVTESRPRGEGRIMAKELRQSGIPVTVIVD------SAVGAFMSRVDKVLVG 194 (301)
T ss_pred CcHHHHHHHHHhhhcC--CceEEEEEcCCCcchHHHHHHHHHHcCCceEEEec------hHHHHHHHhCCEEEEC
Confidence 4455555555433321 23444444 34444455667777889999998763 2344444466766554
No 352
>PRK08535 translation initiation factor IF-2B subunit delta; Provisional
Probab=32.15 E-value=2.5e+02 Score=27.39 Aligned_cols=54 Identities=17% Similarity=0.282 Sum_probs=29.2
Q ss_pred EEEeCC-chhHHHHHHhhhcCCcCeeEEEEEeCCCCCCCchHHHHHHHcCCCEEEEc
Q 020794 133 VLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC 188 (321)
Q Consensus 133 vl~S~~-g~~l~~lL~~~~~~~l~~~i~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~ 188 (321)
||.-+. +..+..|..+.++|+ +..|. |.=+++...+........+.|||+..++
T Consensus 124 ILT~~~S~tv~~~l~~A~~~~k-~~~V~-v~EsrP~~~G~~~a~~L~~~GI~vtlI~ 178 (310)
T PRK08535 124 IMTHCNSSAALSVIKTAHEQGK-DIEVI-ATETRPRNQGHITAKELAEYGIPVTLIV 178 (310)
T ss_pred EEEeCCcHHHHHHHHHHHHCCC-eEEEE-EecCCchhhHHHHHHHHHHCCCCEEEEe
Confidence 444333 455666666666664 34443 2222322222334555678899999886
No 353
>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional
Probab=32.14 E-value=5.1e+02 Score=28.86 Aligned_cols=34 Identities=12% Similarity=0.093 Sum_probs=28.6
Q ss_pred EEEEEEcC---CccchHHHHHHHHHhcCCeEeEeeee
Q 020794 43 GIHVFHCP---DEVGIVAKLSECIASRGGNILAADVF 76 (321)
Q Consensus 43 ~Iltv~G~---Dr~GIVA~VS~~La~~G~NI~d~~q~ 76 (321)
.+|++.|. +++|+.++|-+.|+++|+||.-+.+.
T Consensus 323 ~lItv~~~~~~~~~g~~a~if~~la~~~I~Vd~I~ss 359 (861)
T PRK08961 323 VLVSMETIGMWQQVGFLADVFTLFKKHGLSVDLISSS 359 (861)
T ss_pred EEEEEecCCccccccHHHHHHHHHHHcCCeEEEEEcC
Confidence 46777644 58999999999999999999888764
No 354
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=32.01 E-value=2.8e+02 Score=24.70 Aligned_cols=73 Identities=10% Similarity=0.098 Sum_probs=40.4
Q ss_pred ChHHHHHHHHHHHHHhhhccceeeeCCCCCCeeEEEEEeCCc-hhHHHHHHhhhcCCcCeeEEEEEeCCCCCCCchHHHH
Q 020794 98 PREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQE-HCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRF 176 (321)
Q Consensus 98 ~~~~L~~~L~~la~~lg~~~~~~r~~~~~~~~rIavl~S~~g-~~l~~lL~~~~~~~l~~~i~~Vis~~~~~~~~~v~~~ 176 (321)
-..++.+.+.+.++++|. .+.+..+... ......++...++. +.+|+............+.
T Consensus 13 ~~~~~~~~i~~~a~~~g~--------------~~~~~~~~~~~~~~~~~i~~l~~~~----vdgii~~~~~~~~~~~~~~ 74 (269)
T cd06281 13 LLAQLFSGAEDRLRAAGY--------------SLLIANSLNDPERELEILRSFEQRR----MDGIIIAPGDERDPELVDA 74 (269)
T ss_pred cHHHHHHHHHHHHHHcCC--------------EEEEEeCCCChHHHHHHHHHHHHcC----CCEEEEecCCCCcHHHHHH
Confidence 367788888888877653 3444444433 22334444433332 3333322211112356778
Q ss_pred HHHcCCCEEEEc
Q 020794 177 LERHGIPYHYLC 188 (321)
Q Consensus 177 a~~~gIP~~~~~ 188 (321)
++++|||+..++
T Consensus 75 ~~~~~ipvV~i~ 86 (269)
T cd06281 75 LASLDLPIVLLD 86 (269)
T ss_pred HHhCCCCEEEEe
Confidence 888999998886
No 355
>PRK07027 cobalamin biosynthesis protein CbiG; Provisional
Probab=31.27 E-value=1e+02 Score=26.07 Aligned_cols=40 Identities=15% Similarity=0.318 Sum_probs=28.2
Q ss_pred hhcCCc-CeeEEEEEeCCCCCCCchHHHHHHHcCCCEEEEc
Q 020794 149 WQEGKL-PVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC 188 (321)
Q Consensus 149 ~~~~~l-~~~i~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~ 188 (321)
++...+ +..|.++.|-..+.....+++.|++.|+|+..++
T Consensus 27 L~~~~l~~~si~~lasi~~K~~E~~L~~~A~~lg~pl~~~~ 67 (126)
T PRK07027 27 LAQRPLASADVRVVATLDLKADEAGLLALCARHGWPLRAFS 67 (126)
T ss_pred HHHcCCCHHHhheeEehhhhcCCHHHHHHHHHhCCCeEEeC
Confidence 434444 4567777665544345688999999999999886
No 356
>PRK14448 acylphosphatase; Provisional
Probab=31.15 E-value=2.3e+02 Score=22.50 Aligned_cols=58 Identities=19% Similarity=0.121 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHhhhccceeeeCCCCCCeeEEEEEeCCchhHHHHHHhhhcCCcCeeEEEEEe
Q 020794 102 MDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVIS 163 (321)
Q Consensus 102 L~~~L~~la~~lg~~~~~~r~~~~~~~~rIavl~S~~g~~l~~lL~~~~~~~l~~~i~~Vis 163 (321)
++.-...+|.++|+.-|--+.++ -.|-+.+.|....++++++.+++|...+.|.-|-.
T Consensus 17 FR~~v~~~A~~lgl~G~V~N~~d----G~Vei~~~G~~~~v~~f~~~l~~gp~~a~V~~v~~ 74 (90)
T PRK14448 17 FRYFTWQEATKIGIKGYVKNRPD----GSVEVVAVGSDAQIAAFRDWLQHGPPTAVVCNVIE 74 (90)
T ss_pred hHHHHHHHHHHhCCEEEEEECCC----CCEEEEEEeCHHHHHHHHHHHHhCCCceEEEEEEE
Confidence 45667778899998766433332 35777888888889999999887755577776643
No 357
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=30.90 E-value=1.2e+02 Score=30.27 Aligned_cols=84 Identities=15% Similarity=0.179 Sum_probs=40.9
Q ss_pred CCeeEEEEEeCC-chhHHHHHHhhhcCC----cCeeEEEEEeCCCCCCCchHHHHHHHcCCCEEEEcC---Ccch-hHHH
Q 020794 127 PKYKVAVLASKQ-EHCLVDFLYGWQEGK----LPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCA---KENE-REEE 197 (321)
Q Consensus 127 ~~~rIavl~S~~-g~~l~~lL~~~~~~~----l~~~i~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~~---~~~~-~~~~ 197 (321)
+++||+|+++|. |+.|..+|.. ++. ..++|..- ..++.-......+.-.+.+.-..+++. +++. -..+
T Consensus 10 ~~~ki~ViGaG~wGtAlA~~l~~--n~~~~~~~~~~V~lw-~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsd 86 (365)
T PTZ00345 10 GPLKVSVIGSGNWGSAISKVVGE--NTQRNYIFHNEVRMW-VLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSD 86 (365)
T ss_pred CCCeEEEECCCHHHHHHHHHHHh--cCCcccCCCCeEEEE-EecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecC
Confidence 468999999999 5777777753 231 12455543 322110011223333333222222221 1111 1124
Q ss_pred HHHHhcCCCEEEEEee
Q 020794 198 LLELVQNTDFLVLARY 213 (321)
Q Consensus 198 ~~~~l~~~Dlivlag~ 213 (321)
+.+.++++|++|++-=
T Consensus 87 l~eav~~aDiIvlAVP 102 (365)
T PTZ00345 87 LKEAVEDADLLIFVIP 102 (365)
T ss_pred HHHHHhcCCEEEEEcC
Confidence 4455668999988733
No 358
>PRK08335 translation initiation factor IF-2B subunit alpha; Validated
Probab=30.89 E-value=2.6e+02 Score=27.03 Aligned_cols=65 Identities=12% Similarity=0.134 Sum_probs=35.0
Q ss_pred CchhHHHHHHhhhcCCcCeeEEEEEeCCCCCCCchHHHHHHHcCCCEEEEcCCcchhHHHHHHHhcCCCEEEE
Q 020794 138 QEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDFLVL 210 (321)
Q Consensus 138 ~g~~l~~lL~~~~~~~l~~~i~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~~~~~l~~~Dlivl 210 (321)
+++.+..|..+.++|+ ..+|. |.-+++...+..+.....+.|||+..+... .+..++.++|.+++
T Consensus 119 S~tv~~~l~~A~~~gk-~~~V~-v~EsrP~~qG~~la~eL~~~GI~vtlI~Ds------a~~~~m~~vd~Viv 183 (275)
T PRK08335 119 SSAVLEILKTAKRKGK-RFKVI-LTESAPDYEGLALANELEFLGIEFEVITDA------QLGLFAKEATLALV 183 (275)
T ss_pred cHHHHHHHHHHHHcCC-ceEEE-EecCCCchhHHHHHHHHHHCCCCEEEEecc------HHHHHHHhCCEEEE
Confidence 3555666666666664 34443 333333323344555556789999988631 22333345676654
No 359
>PRK00536 speE spermidine synthase; Provisional
Probab=30.82 E-value=76 Score=30.42 Aligned_cols=43 Identities=5% Similarity=0.025 Sum_probs=32.4
Q ss_pred CCCeeEEEEEeCCchhHHHHHHhhhcCCcCeeEEEEEeCCCCCCCchHHHHHHHc
Q 020794 126 DPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERH 180 (321)
Q Consensus 126 ~~~~rIavl~S~~g~~l~~lL~~~~~~~l~~~i~~Vis~~~~~~~~~v~~~a~~~ 180 (321)
..++||.|+|.|.|..++.+|+. +.+|+.|=-+ ..+.+.|+++
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh------~~~v~mVeID------~~Vv~~~k~~ 113 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKY------DTHVDFVQAD------EKILDSFISF 113 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCc------CCeeEEEECC------HHHHHHHHHH
Confidence 45789999999999999999875 1255555333 2688999885
No 360
>PLN02748 tRNA dimethylallyltransferase
Probab=30.79 E-value=2.9e+02 Score=28.78 Aligned_cols=108 Identities=18% Similarity=0.188 Sum_probs=71.1
Q ss_pred CCCcccCCCCCCcccEEEEEEcCCccchHHHHHHHHHhc-CCeEeEeee--ec------------cCCCCe-EEEEEEEE
Q 020794 28 PGEPIESSVSPTLTHGIHVFHCPDEVGIVAKLSECIASR-GGNILAADV--FV------------PEKKNV-FYSRSEFI 91 (321)
Q Consensus 28 ~~~~~~~~~~~~~~~~Iltv~G~Dr~GIVA~VS~~La~~-G~NI~d~~q--~~------------~~l~g~-F~Mr~~v~ 91 (321)
||--.+++++...+.-++.|.||.-.|= ..++..|+++ |+-|++.+. .- .+.+|. ..|+=.++
T Consensus 8 ~~~~~~~~~~~~~~~~~i~i~GptgsGK-s~la~~la~~~~~eii~~DsmQVYrgLdIgTaKpt~eE~~~VpHHLid~v~ 86 (468)
T PLN02748 8 PGAGEEGSPKQKGKAKVVVVMGPTGSGK-SKLAVDLASHFPVEIINADSMQVYSGLDVLTNKVPLHEQKGVPHHLLGVIS 86 (468)
T ss_pred CCCCCCCCcccCCCCCEEEEECCCCCCH-HHHHHHHHHhcCeeEEcCchheeeCCcchhcCCCCHHHHcCCCCeeEeecC
Confidence 4555566777777778999999999996 4456667766 788998763 20 011222 22333344
Q ss_pred eCCCCCChHHHHHHHHHHHHHhhhccceeeeCCCCCCeeEEEEEeCCchhHHHHHHhh
Q 020794 92 FDPIKWPREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGW 149 (321)
Q Consensus 92 ~~~~~~~~~~L~~~L~~la~~lg~~~~~~r~~~~~~~~rIavl~S~~g~~l~~lL~~~ 149 (321)
.. ..++...++++-.++.+++- .+-|+-|++-|+|-=+++||...
T Consensus 87 p~-e~ysv~~F~~~A~~~I~~I~------------~rgk~PIlVGGTglYi~aLl~g~ 131 (468)
T PLN02748 87 PS-VEFTAKDFRDHAVPLIEEIL------------SRNGLPVIVGGTNYYIQALVSPF 131 (468)
T ss_pred CC-CcCcHHHHHHHHHHHHHHHH------------hcCCCeEEEcChHHHHHHHHcCc
Confidence 43 46788887777666655441 23478899988887788998753
No 361
>PRK14420 acylphosphatase; Provisional
Probab=30.45 E-value=1.8e+02 Score=23.04 Aligned_cols=58 Identities=17% Similarity=-0.028 Sum_probs=41.0
Q ss_pred HHHHHHHHHHhhhccceeeeCCCCCCeeEEEEEeCCchhHHHHHHhhhcCCcCeeEEEEEeC
Q 020794 103 DEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISN 164 (321)
Q Consensus 103 ~~~L~~la~~lg~~~~~~r~~~~~~~~rIavl~S~~g~~l~~lL~~~~~~~l~~~i~~Vis~ 164 (321)
+.-...+|.++|+.-|-.+. +.-+|-+.+.|....++++++.++++...+.|..+-..
T Consensus 18 R~~~~~~A~~~gl~G~V~N~----~dG~Vei~~qG~~~~i~~f~~~l~~~p~~a~V~~i~~~ 75 (91)
T PRK14420 18 RYFVQMEADKRKLTGWVKNR----DDGTVEIEAEGPEEALQLFLDAIEKGSPFSKVTDVHIE 75 (91)
T ss_pred hHHHHHHHHHcCCEEEEEEC----CCCcEEEEEEECHHHHHHHHHHHHhCCCCCEEEEEEEE
Confidence 45566778889987663322 23468888888888899999999888545677665443
No 362
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=30.41 E-value=1.1e+02 Score=24.86 Aligned_cols=30 Identities=17% Similarity=0.090 Sum_probs=20.0
Q ss_pred EEEEEEcCCccchHHHHHHHHHhcCCeEeEe
Q 020794 43 GIHVFHCPDEVGIVAKLSECIASRGGNILAA 73 (321)
Q Consensus 43 ~Iltv~G~Dr~GIVA~VS~~La~~G~NI~d~ 73 (321)
+.+++.-.|+..++ .+...+.++|..|...
T Consensus 2 i~isv~d~~K~~~~-~~a~~l~~~G~~i~AT 31 (112)
T cd00532 2 VFLSVSDHVKAMLV-DLAPKLSSDGFPLFAT 31 (112)
T ss_pred EEEEEEcccHHHHH-HHHHHHHHCCCEEEEC
Confidence 35667667777776 4566777777777644
No 363
>PRK14435 acylphosphatase; Provisional
Probab=30.39 E-value=1.8e+02 Score=23.10 Aligned_cols=59 Identities=20% Similarity=0.159 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHhhhccceeeeCCCCCCeeEEEEEeCCchhHHHHHHhhhcCCcCeeEEEEEeC
Q 020794 102 MDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISN 164 (321)
Q Consensus 102 L~~~L~~la~~lg~~~~~~r~~~~~~~~rIavl~S~~g~~l~~lL~~~~~~~l~~~i~~Vis~ 164 (321)
++.-...+|.++|+.-|-.+.++ -.|-+.+.|+...+.++++.+++|...++|.-|-..
T Consensus 17 FR~~v~~~A~~~gl~G~V~N~~d----G~Vei~~~G~~~~i~~f~~~l~~gp~~a~V~~v~~~ 75 (90)
T PRK14435 17 FRYFTRRVAKSLGVKGYVMNMDD----GSVFIHAEGDENALRRFLNEVAKGPPAAVVTNVSVE 75 (90)
T ss_pred ChHHHHHHHHHhCCEEEEEECCC----CCEEEEEEECHHHHHHHHHHHhhCCCCcEEEEEEEE
Confidence 35566778889998776433322 357777788888899999998877655777766443
No 364
>COG1254 AcyP Acylphosphatases [Energy production and conversion]
Probab=30.21 E-value=3e+02 Score=22.30 Aligned_cols=58 Identities=12% Similarity=0.045 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHhhhccceeeeCCCCCCeeEEEEEeCCchhHHHHHHhhhcCCcCeeEEEEEe
Q 020794 102 MDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVIS 163 (321)
Q Consensus 102 L~~~L~~la~~lg~~~~~~r~~~~~~~~rIavl~S~~g~~l~~lL~~~~~~~l~~~i~~Vis 163 (321)
++......|.++|+.-|-.++.+. +|=+++.|....++.+++.+++|...+.|.-|-.
T Consensus 19 FR~~~~~~A~~lgl~G~V~N~~DG----sVeiva~G~~~~v~~~~~~l~~g~~~a~V~~v~~ 76 (92)
T COG1254 19 FRYFTRSEALRLGLTGWVKNLDDG----SVEIVAEGPDEAVEKFIEWLRKGPPAAKVERVEV 76 (92)
T ss_pred HHHHHHHHHHHCCCEEEEEECCCC----eEEEEEEcCHHHHHHHHHHHHhCCCceEEEEEEE
Confidence 567788889999988776655442 7788888888779999999888854477776654
No 365
>PRK14442 acylphosphatase; Provisional
Probab=30.19 E-value=1.8e+02 Score=23.20 Aligned_cols=59 Identities=14% Similarity=0.030 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHhhhccceeeeCCCCCCeeEEEEEeCCchhHHHHHHhhhcCCcCeeEEEEEeC
Q 020794 102 MDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISN 164 (321)
Q Consensus 102 L~~~L~~la~~lg~~~~~~r~~~~~~~~rIavl~S~~g~~l~~lL~~~~~~~l~~~i~~Vis~ 164 (321)
++--...+|.++|+.-|-.+.++ -.|-+.+.|+...++++++.++++...+.|..|-..
T Consensus 19 FR~~~~~~A~~~gl~G~V~N~~d----G~Vei~~qG~~~~i~~f~~~l~~gp~~a~V~~v~~~ 77 (91)
T PRK14442 19 FRQATREEADRLELDGWVRNLDD----GRVEVVWEGEEDRAKALERWLGRGPRHAEVSAVEVE 77 (91)
T ss_pred ccHHHHHHHHHcCCEEEEEECCC----CCEEEEEEcCHHHHHHHHHHHhhCCCCeEEEEEEEE
Confidence 34556678889998877544433 258888888888899999998877555777766443
No 366
>TIGR02689 ars_reduc_gluta arsenate reductase, glutathione/glutaredoxin type. Members of this protein family represent a novel form of arsenate reductase, using glutathione and glutaredoxin rather than thioredoxin for reducing equivalents as do some homologous arsenate reductases. An example of this type is Synechocystis sp. strain PCC 6803 slr0946, and of latter type (excluded from this model) is Staphylococcus aureus plasmid pI258 ArsC. Both are among the subset of arsenate reductases that belong the the low-molecular-weight protein-tyrosine phosphatase superfamily.
Probab=30.11 E-value=1.5e+02 Score=24.52 Aligned_cols=76 Identities=14% Similarity=0.110 Sum_probs=39.5
Q ss_pred eeEEEEEeCCc--hh-HHHHHHhhhcCCcCeeEEEEEeCCCCCCCchHHHHHHHcCCCEEEEcCCcchhHHHHHHHhcCC
Q 020794 129 YKVAVLASKQE--HC-LVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNT 205 (321)
Q Consensus 129 ~rIavl~S~~g--~~-l~~lL~~~~~~~l~~~i~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~~~~~l~~~ 205 (321)
+||.|+..++- |. .++++.....+.+.+.=+++-. .+.+....+.++++||+......+ .. ++. .++++
T Consensus 1 ~~vlfvC~~N~cRS~mAEa~~~~~~~~~~~v~SAG~~~---~~~~p~a~~~l~e~Gid~~~~~s~-~l-~~~---~~~~~ 72 (126)
T TIGR02689 1 KKVMFVCKRNSCRSQMAEGFAKTLGAGNIAVTSAGLEV---SRVHPTAIEVMSEIGIDISGQTSK-PL-ENF---HPEDY 72 (126)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHHhcCCCEEEEcCcCCC---CCCCHHHHHHHHHhCCCcccCccc-cC-Chh---HhcCC
Confidence 46777766663 33 4556665433322112122221 224557788899999997421111 11 111 12379
Q ss_pred CEEEEEe
Q 020794 206 DFLVLAR 212 (321)
Q Consensus 206 Dlivlag 212 (321)
|+||+..
T Consensus 73 D~iitm~ 79 (126)
T TIGR02689 73 DVVISLC 79 (126)
T ss_pred CEEEEeC
Confidence 9998763
No 367
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=29.62 E-value=2e+02 Score=27.72 Aligned_cols=101 Identities=14% Similarity=0.154 Sum_probs=58.1
Q ss_pred CCeeEEEEEeCCc--hhHHHHHHhhhcCCcCeeEEEEEeCCCCCCCchHHHHHH----HcCCCEEEEcCCcchhHHHHHH
Q 020794 127 PKYKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLE----RHGIPYHYLCAKENEREEELLE 200 (321)
Q Consensus 127 ~~~rIavl~S~~g--~~l~~lL~~~~~~~l~~~i~~Vis~~~~~~~~~v~~~a~----~~gIP~~~~~~~~~~~~~~~~~ 200 (321)
...+++++|+|.- ..+++++.- . +.+=+.|. ++. .....++|+ +.|+++..++. ..+
T Consensus 116 da~~l~iiGaG~QA~~~~~a~~~v-~----~i~~v~v~-~r~---~~~a~~f~~~~~~~~~~~v~~~~~--------~~e 178 (301)
T PRK06407 116 NVENFTIIGSGFQAETQLEGMASV-Y----NPKRIRVY-SRN---FDHARAFAERFSKEFGVDIRPVDN--------AEA 178 (301)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhc-C----CCCEEEEE-CCC---HHHHHHHHHHHHHhcCCcEEEeCC--------HHH
Confidence 3579999999864 334444442 1 33334354 332 123334433 34788776542 223
Q ss_pred HhcCCCEEEEEeeccccchhhHhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeEEecCCCCCCCCCCh
Q 020794 201 LVQNTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGK 274 (321)
Q Consensus 201 ~l~~~Dlivlag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~l~~~~~~~INiHpslLP~yrG~~ 274 (321)
.++++|+|+++--.. -| ++..+.++ |+-.||.=.|..|.-+-..
T Consensus 179 av~~aDIV~taT~s~-~P---------------------------~~~~~~l~--pg~hV~aiGs~~p~~~El~ 222 (301)
T PRK06407 179 ALRDADTITSITNSD-TP---------------------------IFNRKYLG--DEYHVNLAGSNYPNRREAE 222 (301)
T ss_pred HHhcCCEEEEecCCC-Cc---------------------------EecHHHcC--CCceEEecCCCCCCcccCC
Confidence 344899999886654 23 66666553 4556888777777665544
No 368
>PRK14452 acylphosphatase; Provisional
Probab=29.58 E-value=2.3e+02 Score=23.55 Aligned_cols=59 Identities=14% Similarity=0.039 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHhhhccceeeeCCCCCCeeEEEEEeCCchhHHHHHHhhhcCCcCeeEEEEEeC
Q 020794 102 MDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISN 164 (321)
Q Consensus 102 L~~~L~~la~~lg~~~~~~r~~~~~~~~rIavl~S~~g~~l~~lL~~~~~~~l~~~i~~Vis~ 164 (321)
++--...+|.++|+.-|-.+..+ -.|-+.+.|....++++++.+.++...++|.-|-..
T Consensus 35 FR~~v~~~A~~lgL~G~V~N~~d----GsVeI~~qG~~~~ve~F~~~l~~gP~~A~V~~v~~~ 93 (107)
T PRK14452 35 FRASCCRRALDLGLSGWVRNLSD----GSVEVQAEGPPLALSELRAWCERGPPGARVKRVDPS 93 (107)
T ss_pred hhHHHHHHHHHhCCEEEEEECCC----CCEEEEEEcCHHHHHHHHHHHhcCCCCcEEEEEEEE
Confidence 45667778899998877544433 257888888888999998877777656777766543
No 369
>TIGR00524 eIF-2B_rel eIF-2B alpha/beta/delta-related uncharacterized proteins. This model, eIF-2B_rel, describes half of a superfamily, where the other half consists of eukaryotic translation initiation factor 2B (eIF-2B) subunits alpha, beta, and delta. It is unclear whether the eIF-2B_rel set is monophyletic, or whether they are all more closely related to each other than to any eIF-2B subunit because the eIF-2B clade is highly derived. Members of this branch of the family are all uncharacterized with respect to function and are found in the Archaea, Bacteria, and Eukarya, although a number are described as putative translation intiation factor components. Proteins found by eIF-2B_rel include at least three clades, including a set of uncharacterized eukaryotic proteins, a set found in some but not all Archaea, and a set universal so far among the Archaea and closely related to several uncharacterized bacterial proteins.
Probab=29.36 E-value=2.4e+02 Score=27.52 Aligned_cols=64 Identities=16% Similarity=0.251 Sum_probs=34.6
Q ss_pred chhHHHHHHhhhcCCcCeeEEEEEeCCCCCCC-chHHHHHHHcCCCEEEEcCCcchhHHHHHHHhc--CCCEEEE
Q 020794 139 EHCLVDFLYGWQEGKLPVEITCVISNHDRGPN-SHVIRFLERHGIPYHYLCAKENEREEELLELVQ--NTDFLVL 210 (321)
Q Consensus 139 g~~l~~lL~~~~~~~l~~~i~~Vis~~~~~~~-~~v~~~a~~~gIP~~~~~~~~~~~~~~~~~~l~--~~Dlivl 210 (321)
+..+..|..+++.|+ ...|. |.-.++...+ ........++|||+.++.. ..+..++. ++|.+++
T Consensus 137 ~tv~~~l~~A~~~g~-~~~V~-v~EsrP~~~G~~~~a~~L~~~gI~vtlI~D------sa~~~~m~~~~vd~Vlv 203 (303)
T TIGR00524 137 GTALGVIRSAWEDGK-RIRVI-ACETRPRNQGSRLTAWELMQDGIDVTLITD------SMAAYFMQKGEIDAVIV 203 (303)
T ss_pred chHHHHHHHHHHcCC-ceEEE-ECCCCCccchHHHHHHHHHHCCCCEEEECh------hHHHHHccccCCCEEEE
Confidence 344555555666664 33433 2223333223 2235566778999998862 23455555 6777765
No 370
>PF01451 LMWPc: Low molecular weight phosphotyrosine protein phosphatase; InterPro: IPR023485 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents the low molecular weight (LMW) protein-tyrosine phosphatases (or acid phosphatase), which act on tyrosine phosphorylated proteins, low-MW aryl phosphates and natural and synthetic acyl phosphates [, ]. The structure of a LMW PTPase has been solved by X-ray crystallography [] and is found to form a single structural domain. It belongs to the alpha/beta class, with 6 alpha-helices and 4 beta-strands forming a 3-layer alpha-beta-alpha sandwich architecture.; PDB: 3RH0_B 1JL3_B 2IPA_B 1Z2D_A 1Z2E_A 2CWD_D 2L18_A 2L17_A 2L19_A 1BVH_A ....
Probab=29.31 E-value=1.7e+02 Score=24.22 Aligned_cols=42 Identities=19% Similarity=0.243 Sum_probs=25.1
Q ss_pred CCCCchHHHHHHHcCCCEEEEcCCcchhHHHHHHHhcCCCEEEEEee
Q 020794 167 RGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDFLVLARY 213 (321)
Q Consensus 167 ~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~~~~~l~~~Dlivlag~ 213 (321)
.+.+..+.+.++++||+.-.... ....+ +. +.++|+|++..-
T Consensus 44 ~~~~~~a~~~l~~~gid~~~~~s-~~l~~-~~---~~~~D~Ii~m~~ 85 (138)
T PF01451_consen 44 EPVDPRAIAVLKEHGIDISGHRS-RQLTE-ED---LDEADLIITMDD 85 (138)
T ss_dssp SSSTHHHHHHHHHTTSSCTTSBB-CBGGH-HH---HHHSSEEEESSH
T ss_pred ccccchHHHHHHHhCCCccccee-ccccc-cc---cccCCEEEEccH
Confidence 33466789999999999642111 11222 22 237899987543
No 371
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=29.11 E-value=1.7e+02 Score=25.30 Aligned_cols=78 Identities=19% Similarity=0.215 Sum_probs=37.3
Q ss_pred CCCCCeeEEEEEeCC-chhHHHHHHhhhcCCcCeeEEEEEeCCCCCCCchHHHHHHHcCCCEEEEcC---Cc--------
Q 020794 124 DIDPKYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCA---KE-------- 191 (321)
Q Consensus 124 ~~~~~~rIavl~S~~-g~~l~~lL~~~~~~~l~~~i~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~~---~~-------- 191 (321)
..-++.||+|++.|. |.....++.. |+++++.. -.. ....+..+..+.-...+.. ..
T Consensus 16 ~~~~p~~vvv~G~G~vg~gA~~~~~~-----lGa~v~~~-d~~-----~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 84 (168)
T PF01262_consen 16 GGVPPAKVVVTGAGRVGQGAAEIAKG-----LGAEVVVP-DER-----PERLRQLESLGAYFIEVDYEDHLERKDFDKAD 84 (168)
T ss_dssp TEE-T-EEEEESTSHHHHHHHHHHHH-----TT-EEEEE-ESS-----HHHHHHHHHTTTEESEETTTTTTTSB-CCHHH
T ss_pred CCCCCeEEEEECCCHHHHHHHHHHhH-----CCCEEEec-cCC-----HHHHHhhhcccCceEEEcccccccccccchhh
Confidence 334568999988776 3445555554 45675533 222 1234445555443333320 00
Q ss_pred -----chhHHHHHHHhcCCCEEEEEe
Q 020794 192 -----NEREEELLELVQNTDFLVLAR 212 (321)
Q Consensus 192 -----~~~~~~~~~~l~~~Dlivlag 212 (321)
...+..+.+.+..+|+++.++
T Consensus 85 ~~~~~~~~~~~f~~~i~~~d~vI~~~ 110 (168)
T PF01262_consen 85 YYEHPESYESNFAEFIAPADIVIGNG 110 (168)
T ss_dssp CHHHCCHHHHHHHHHHHH-SEEEEHH
T ss_pred hhHHHHHhHHHHHHHHhhCcEEeeec
Confidence 112334556666789988644
No 372
>PRK06823 ornithine cyclodeaminase; Validated
Probab=28.97 E-value=3.5e+02 Score=26.36 Aligned_cols=104 Identities=9% Similarity=0.051 Sum_probs=58.2
Q ss_pred CCeeEEEEEeCCc--hhHHHHHHhhhcCCcCeeEEEEEeCCCCCCCchHHHHHHHcCCCEEEEcCCcchhHHHHHHHhcC
Q 020794 127 PKYKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQN 204 (321)
Q Consensus 127 ~~~rIavl~S~~g--~~l~~lL~~~~~~~l~~~i~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~~~~~l~~ 204 (321)
...++++||+|.- +.+++++.. .+.+-+.|.+... .......+.+++.++++..++. ..+.+++
T Consensus 127 d~~~l~iiG~G~qA~~~~~a~~~v-----~~i~~v~v~~r~~-~~a~~~~~~~~~~~~~v~~~~~--------~~~av~~ 192 (315)
T PRK06823 127 HVSAIGIVGTGIQARMQLMYLKNV-----TDCRQLWVWGRSE-TALEEYRQYAQALGFAVNTTLD--------AAEVAHA 192 (315)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhc-----CCCCEEEEECCCH-HHHHHHHHHHHhcCCcEEEECC--------HHHHhcC
Confidence 4579999999874 345555442 1333343443321 1112233444555788776531 2334458
Q ss_pred CCEEEEEeeccccchhhHhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeEEecCCCCCCCCCCh
Q 020794 205 TDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGK 274 (321)
Q Consensus 205 ~Dlivlag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~l~~~~~~~INiHpslLP~yrG~~ 274 (321)
+|+|+++--.. -| ++..+.++ |+-.||.=.|..|..+-..
T Consensus 193 ADIV~taT~s~-~P---------------------------~~~~~~l~--~G~hi~~iGs~~p~~~Eld 232 (315)
T PRK06823 193 ANLIVTTTPSR-EP---------------------------LLQAEDIQ--PGTHITAVGADSPGKQELD 232 (315)
T ss_pred CCEEEEecCCC-Cc---------------------------eeCHHHcC--CCcEEEecCCCCcccccCC
Confidence 99999986654 23 56655553 4556777777777665443
No 373
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=28.88 E-value=1.9e+02 Score=26.17 Aligned_cols=68 Identities=10% Similarity=0.033 Sum_probs=42.4
Q ss_pred EEEEEEcCCc-cchHHHHHHHHHhcCCeEeEeeee------ccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHHHHHhh
Q 020794 43 GIHVFHCPDE-VGIVAKLSECIASRGGNILAADVF------VPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFN 114 (321)
Q Consensus 43 ~Iltv~G~Dr-~GIVA~VS~~La~~G~NI~d~~q~------~~~l~g~F~Mr~~v~~~~~~~~~~~L~~~L~~la~~lg 114 (321)
-++.|+|.-. .||=.+++..|++.|.+++-..-. .....+.-.-.+.+|+. +.+++++.++.+.+++|
T Consensus 8 k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~Dl~----~~~~v~~~~~~~~~~~g 82 (252)
T PRK06079 8 KKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQNDRMKKSLQKLVDEEDLLVECDVA----SDESIERAFATIKERVG 82 (252)
T ss_pred CEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCchHHHHHHHhhccCceeEEeCCCC----CHHHHHHHHHHHHHHhC
Confidence 3566778876 789999999999999998854211 01111110112334443 56778888887776664
No 374
>PF01248 Ribosomal_L7Ae: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; InterPro: IPR004038 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, ribosomal protein L30 from eukaryotes and archaebacteria, Gadd45 and MyD118 [].; PDB: 2CZW_A 3V7E_B 2QEX_F 1YJ9_F 1VQ8_F 1YJN_F 3I56_F 1VQ6_F 2OTJ_F 1YIJ_F ....
Probab=28.63 E-value=75 Score=24.82 Aligned_cols=26 Identities=27% Similarity=0.419 Sum_probs=19.3
Q ss_pred HHHHHHHcCCCEEEEcCCcchhHHHHHHHhc
Q 020794 173 VIRFLERHGIPYHYLCAKENEREEELLELVQ 203 (321)
Q Consensus 173 v~~~a~~~gIP~~~~~~~~~~~~~~~~~~l~ 203 (321)
+..+|++++||+..++. ..++-+++.
T Consensus 50 l~~~c~~~~Ip~~~~~s-----~~eLG~~~g 75 (95)
T PF01248_consen 50 LPALCEEKNIPYVFVPS-----KEELGRACG 75 (95)
T ss_dssp HHHHHHHTTEEEEEESH-----HHHHHHHTT
T ss_pred chhheeccceeEEEECC-----HHHHHHHHC
Confidence 66899999999998762 246666664
No 375
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=28.31 E-value=1.2e+02 Score=24.36 Aligned_cols=30 Identities=17% Similarity=0.143 Sum_probs=20.0
Q ss_pred EEEEEEcCCccchHHHHHHHHHhcCCeEeEe
Q 020794 43 GIHVFHCPDEVGIVAKLSECIASRGGNILAA 73 (321)
Q Consensus 43 ~Iltv~G~Dr~GIVA~VS~~La~~G~NI~d~ 73 (321)
.++++...|+.-.+ .+.+.|.+.|.+|...
T Consensus 3 vl~s~~~~~k~~~~-~~~~~l~~~G~~l~aT 32 (110)
T cd01424 3 VFISVADRDKPEAV-EIAKRLAELGFKLVAT 32 (110)
T ss_pred EEEEEEcCcHhHHH-HHHHHHHHCCCEEEEc
Confidence 56677777777665 4466777777777543
No 376
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=28.06 E-value=3.4e+02 Score=23.99 Aligned_cols=138 Identities=17% Similarity=0.228 Sum_probs=65.5
Q ss_pred EEEEEeCCchh--HHHHHHhhhcCCcCeeEEEEEeCCCCCCCchHHHHHHH-------cCCCEEEEcCCcchhH--H---
Q 020794 131 VAVLASKQEHC--LVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLER-------HGIPYHYLCAKENERE--E--- 196 (321)
Q Consensus 131 Iavl~S~~g~~--l~~lL~~~~~~~l~~~i~~Vis~~~~~~~~~v~~~a~~-------~gIP~~~~~~~~~~~~--~--- 196 (321)
|.++.|+.||- |..|+..+... .......+++..+..+...+.++-+. ..+|-...-.....+. .
T Consensus 1 Il~v~gsGGHt~eml~L~~~~~~~-~~~~~~~ivt~~d~~S~~k~~~~~~~~~~~~~~~~~~r~r~v~q~~~~~~~~~l~ 79 (170)
T PF08660_consen 1 ILVVLGSGGHTAEMLRLLKALDND-RYQPRTYIVTEGDKQSRSKAEQLEKSSSKRHKILEIPRAREVGQSYLTSIFTTLR 79 (170)
T ss_pred CEEEEcCcHHHHHHHHHHHHhhhh-cCCCcEEEEEcCCcccHHHHHHHHHhccccceeeccceEEEechhhHhhHHHHHH
Confidence 34566666775 44566666222 22344667787765433333333333 2344322111000111 1
Q ss_pred ---HHHHHh-c-CCCEEEEEeeccccchhhHhhhhhhhhhhh---cccCcccccc----cccCChhHHhhcCCCeEEecC
Q 020794 197 ---ELLELV-Q-NTDFLVLARYMQPVPLQKEAYLGYKLLESL---SSKGSLTSYF----NMILSGKFLRSYGKDVINIHH 264 (321)
Q Consensus 197 ---~~~~~l-~-~~Dlivlag~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~----~~il~~~~l~~~~~~~INiHp 264 (321)
..+.++ + +||++++-|-+-=+|. ++.++ |++-+ ..+-.--++| .-=++.+++..+...++--.|
T Consensus 80 ~~~~~~~il~r~rPdvii~nGpg~~vp~---~~~~~-l~~~~~~~~~kiIyIES~aRv~~lSlTGklly~~aD~f~VQW~ 155 (170)
T PF08660_consen 80 AFLQSLRILRRERPDVIISNGPGTCVPV---CLAAK-LLRLLGLRGSKIIYIESFARVKTLSLTGKLLYPFADRFIVQWE 155 (170)
T ss_pred HHHHHHHHHHHhCCCEEEEcCCceeeHH---HHHHH-HHHHhhccCCcEEEEEeeeecCCCchHHHHHHHhCCEEEEcCH
Confidence 111222 2 8999999888765551 12222 22000 1111111111 112566777777777888888
Q ss_pred CCCCCCCCC
Q 020794 265 GLLPSFKGG 273 (321)
Q Consensus 265 slLP~yrG~ 273 (321)
.+...|+.+
T Consensus 156 ~l~~~yp~a 164 (170)
T PF08660_consen 156 ELAEKYPRA 164 (170)
T ss_pred HHHhHCCCC
Confidence 887777554
No 377
>PTZ00106 60S ribosomal protein L30; Provisional
Probab=27.97 E-value=80 Score=26.23 Aligned_cols=48 Identities=13% Similarity=0.082 Sum_probs=27.5
Q ss_pred EEeCCchhHHHHHHhhhcCCcCeeEEEEEeCCCCCCCchHHHHHHHcCCCEEEE
Q 020794 134 LASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYL 187 (321)
Q Consensus 134 l~S~~g~~l~~lL~~~~~~~l~~~i~~Vis~~~~~~~~~v~~~a~~~gIP~~~~ 187 (321)
+++|...+++++- .|+ +..+.+-+|-+......+..+|+.++||++.+
T Consensus 26 lv~G~~~vlkalk----~gk--aklViiA~D~~~~~kkki~~~~~~~~Vpv~~~ 73 (108)
T PTZ00106 26 YTLGTKSTLKALR----NGK--AKLVIISNNCPPIRRSEIEYYAMLSKTGVHHY 73 (108)
T ss_pred eeecHHHHHHHHH----cCC--eeEEEEeCCCCHHHHHHHHHHHhhcCCCEEEe
Confidence 5566666666553 342 34443333332111246788999999999864
No 378
>PRK14421 acylphosphatase; Provisional
Probab=27.85 E-value=2.7e+02 Score=22.75 Aligned_cols=59 Identities=10% Similarity=0.074 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHhhhccceeeeCCCCCCeeEEEEEeCCchhHHHHHHhhhcCCcCeeEEEEEeC
Q 020794 102 MDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISN 164 (321)
Q Consensus 102 L~~~L~~la~~lg~~~~~~r~~~~~~~~rIavl~S~~g~~l~~lL~~~~~~~l~~~i~~Vis~ 164 (321)
++.-...+|.++|+.-|-.+..+ -.|-+.+.|....++++++.++++...++|.-|-..
T Consensus 19 FR~fv~~~A~~lgL~G~V~N~~d----G~Vei~~~G~~~~i~~f~~~l~~gP~~a~V~~v~~~ 77 (99)
T PRK14421 19 YRAWVARTAEALGLEGWVRNRRD----GSVEALFAGPADAVAEMIARCRRGPSAARVDAVEDE 77 (99)
T ss_pred chHHHHHHHHHhCCEEEEEECCC----CEEEEEEeCCHHHHHHHHHHHHhCCCCcEEEEEEEE
Confidence 34556677888998776433322 278888888888899999988877555777766443
No 379
>TIGR03022 WbaP_sugtrans Undecaprenyl-phosphate galactose phosphotransferase, WbaP. This model includes the enterobacterial enzymes, where the function is presumed to be identical to the S. typhimurium enzyme as well as a somewhat broader group which are likely to catalyze the same or highly similar reactions based on a phylogenetic tree-building analysis of the broader sugar transferase family. Most of these genes are found within large operons dedicated to the production of complex exopolysaccharides such as the enterobacterial O-antigen. The most likely heterogeneity would be in the precise nature of the sugar molecule transferred.
Probab=27.59 E-value=4.8e+02 Score=26.23 Aligned_cols=37 Identities=11% Similarity=0.087 Sum_probs=22.3
Q ss_pred CCeeEEEEEeCCchhHHHHHHhhh-cCCcCeeEEEEEeCC
Q 020794 127 PKYKVAVLASKQEHCLVDFLYGWQ-EGKLPVEITCVISNH 165 (321)
Q Consensus 127 ~~~rIavl~S~~g~~l~~lL~~~~-~~~l~~~i~~Vis~~ 165 (321)
.++|++++|+++. .+.+++..+ +.....++++++.+.
T Consensus 124 ~~rrvlIiGag~~--~~~l~~~l~~~~~~g~~vvGfidd~ 161 (456)
T TIGR03022 124 WGRPAVIIGAGQN--AAILYRALQSNPQLGLRPLAVVDTD 161 (456)
T ss_pred CCceEEEEeCCHH--HHHHHHHHhhCccCCcEEEEEEeCC
Confidence 3467888887653 233444433 233457899988764
No 380
>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]
Probab=27.57 E-value=2.8e+02 Score=28.67 Aligned_cols=38 Identities=13% Similarity=0.150 Sum_probs=32.8
Q ss_pred CCcccEEEEEEcC---CccchHHHHHHHHHhcCCeEeEeee
Q 020794 38 PTLTHGIHVFHCP---DEVGIVAKLSECIASRGGNILAADV 75 (321)
Q Consensus 38 ~~~~~~Iltv~G~---Dr~GIVA~VS~~La~~G~NI~d~~q 75 (321)
-..+-.+++++|. ..+|+.+++.+.|+++|+||.-++.
T Consensus 379 ~~~~~a~vsiVG~gm~~~~gvaa~~f~aL~~~~ini~~iss 419 (447)
T COG0527 379 VEEGLALVSIVGAGMRSNPGVAARIFQALAEENINIIMISS 419 (447)
T ss_pred eeCCeeEEEEEccccccCcCHHHHHHHHHHhCCCcEEEEEc
Confidence 4456679999997 4678999999999999999999984
No 381
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=27.16 E-value=2.2e+02 Score=26.69 Aligned_cols=32 Identities=25% Similarity=0.451 Sum_probs=20.4
Q ss_pred eeEEEEEeC-C-chh-HHHHHHhhhcCCcCeeEEEEEeCCC
Q 020794 129 YKVAVLASK-Q-EHC-LVDFLYGWQEGKLPVEITCVISNHD 166 (321)
Q Consensus 129 ~rIavl~S~-~-g~~-l~~lL~~~~~~~l~~~i~~Vis~~~ 166 (321)
||||+++-. . |+- ++..+. .| +++++++-|+.
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~---RG---HeVTAivRn~~ 35 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALK---RG---HEVTAIVRNAS 35 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHh---CC---CeeEEEEeChH
Confidence 699999844 3 332 333333 34 89999997764
No 382
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=27.08 E-value=1.8e+02 Score=28.97 Aligned_cols=72 Identities=22% Similarity=0.292 Sum_probs=39.1
Q ss_pred CeeEEEEEeCC-chhHHHHHHhhhcCCcCeeEEEEEeCCCCCCCchHHHHHHHc-CCCEEEEcC---Ccch-hHHHHHHH
Q 020794 128 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERH-GIPYHYLCA---KENE-REEELLEL 201 (321)
Q Consensus 128 ~~rIavl~S~~-g~~l~~lL~~~~~~~l~~~i~~Vis~~~~~~~~~v~~~a~~~-gIP~~~~~~---~~~~-~~~~~~~~ 201 (321)
++||+|+++|. |+.|..+|.. +| ++|.. ...++ ..+.+.-..+ |-.|. +. +.+. -+.++.+.
T Consensus 1 ~~kI~ViGaGswGTALA~~la~--ng---~~V~l-w~r~~----~~~~~i~~~~~N~~yL--p~i~lp~~l~at~Dl~~a 68 (329)
T COG0240 1 MMKIAVIGAGSWGTALAKVLAR--NG---HEVRL-WGRDE----EIVAEINETRENPKYL--PGILLPPNLKATTDLAEA 68 (329)
T ss_pred CceEEEEcCChHHHHHHHHHHh--cC---CeeEE-EecCH----HHHHHHHhcCcCcccc--CCccCCcccccccCHHHH
Confidence 47999999998 6888877764 33 45543 33321 1222222221 22222 21 1121 13456677
Q ss_pred hcCCCEEEEE
Q 020794 202 VQNTDFLVLA 211 (321)
Q Consensus 202 l~~~Dlivla 211 (321)
++++|++|++
T Consensus 69 ~~~ad~iv~a 78 (329)
T COG0240 69 LDGADIIVIA 78 (329)
T ss_pred HhcCCEEEEE
Confidence 7689999887
No 383
>PRK14432 acylphosphatase; Provisional
Probab=26.99 E-value=2.6e+02 Score=22.38 Aligned_cols=58 Identities=12% Similarity=0.055 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHhhhccceeeeCCCCCCeeEEEEEe-CCchhHHHHHHhhhcCCcCeeEEEEEe
Q 020794 102 MDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLAS-KQEHCLVDFLYGWQEGKLPVEITCVIS 163 (321)
Q Consensus 102 L~~~L~~la~~lg~~~~~~r~~~~~~~~rIavl~S-~~g~~l~~lL~~~~~~~l~~~i~~Vis 163 (321)
++--...+|.++|+.-|-.+..+ . .|-+.+. |....++++++.+++|...+.|.-|-.
T Consensus 17 FR~~v~~~A~~lgl~G~V~N~~d--G--~Vei~~~~G~~~~v~~f~~~l~~gp~~a~V~~v~~ 75 (93)
T PRK14432 17 FRFFTEQIANNMKLKGFVKNLND--G--RVEIVAFFNTKEQMKKFEKLLKNGNKYSNIENIEK 75 (93)
T ss_pred ehHHHHHHHHHhCCEEEEEECCC--C--CEEEEEEECCHHHHHHHHHHHHhCCCccEEEEEEE
Confidence 34556678889998776443432 2 5667776 888889999999888854577776644
No 384
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=26.50 E-value=1.4e+02 Score=23.00 Aligned_cols=38 Identities=29% Similarity=0.263 Sum_probs=24.1
Q ss_pred HHHHhhhcCCcCeeEEEEEeCCCC-CC-----CchHHHHHHHcCCCEE
Q 020794 144 DFLYGWQEGKLPVEITCVISNHDR-GP-----NSHVIRFLERHGIPYH 185 (321)
Q Consensus 144 ~lL~~~~~~~l~~~i~~Vis~~~~-~~-----~~~v~~~a~~~gIP~~ 185 (321)
.+++..++| +|.+||..... .. ...+.+.|.+++||+.
T Consensus 46 ~i~~~i~~g----~id~VIn~~~~~~~~~~~d~~~iRr~A~~~~Ip~~ 89 (90)
T smart00851 46 AILDLIKNG----EIDLVINTLYPLGAQPHEDGKALRRAAENIDIPGA 89 (90)
T ss_pred HHHHHhcCC----CeEEEEECCCcCcceeccCcHHHHHHHHHcCCCee
Confidence 355666555 45666655432 11 3467888999999985
No 385
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=26.36 E-value=1.1e+02 Score=33.93 Aligned_cols=126 Identities=14% Similarity=0.139 Sum_probs=68.6
Q ss_pred HHhcCCeEeEeeeeccC--CCCeEEEEEEEEeCCCCCChHHHHHHHHHHHHHhhhccceeeeCCCCCCeeE----EEEEe
Q 020794 63 IASRGGNILAADVFVPE--KKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKV----AVLAS 136 (321)
Q Consensus 63 La~~G~NI~d~~q~~~~--l~g~F~Mr~~v~~~~~~~~~~~L~~~L~~la~~lg~~~~~~r~~~~~~~~rI----avl~S 136 (321)
=++.|+.|..-+++... .+..|-|.- .+.+..-....-.++| .+-|++. ...+|+..|..|. .|+.+
T Consensus 336 EaKE~v~i~~e~~t~AsIT~QnfFr~Y~--kLsGMTGTa~t~~~Ef---~~iY~l~--Vv~IPtnkp~~R~d~~d~iy~t 408 (764)
T PRK12326 336 EAKEGLETTETGEVLDTITVQALIGRYP--TVCGMTGTAVAAGEQL---RQFYDLG--VSVIPPNKPNIREDEADRVYAT 408 (764)
T ss_pred HHHcCCCCCCCceeeehhhHHHHHHhcc--hheeecCCChhHHHHH---HHHhCCc--EEECCCCCCceeecCCCceEeC
Confidence 35677777776666322 222333332 2332222333334444 4446654 3556766665555 55555
Q ss_pred CCchhHHHHHHh----hhcCCcCeeEEEEEeCCCCCCCchHHHHHHHcCCCEEEEcCCcchhHHHHHHH
Q 020794 137 KQEHCLVDFLYG----WQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLEL 201 (321)
Q Consensus 137 ~~g~~l~~lL~~----~~~~~l~~~i~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~~~~~ 201 (321)
... -.+++++. .+.| ++++|.|..-.. .-.+.+...+.|||..++..+...+|+++.+.
T Consensus 409 ~~~-k~~Aii~ei~~~~~~G----rPVLVgt~sI~~-SE~ls~~L~~~gI~h~vLNAk~~~~EA~IIa~ 471 (764)
T PRK12326 409 AAE-KNDAIVEHIAEVHETG----QPVLVGTHDVAE-SEELAERLRAAGVPAVVLNAKNDAEEARIIAE 471 (764)
T ss_pred HHH-HHHHHHHHHHHHHHcC----CCEEEEeCCHHH-HHHHHHHHHhCCCcceeeccCchHhHHHHHHh
Confidence 433 23444443 3444 567787764210 12456777889999999887766667666654
No 386
>PF06877 RraB: Regulator of ribonuclease activity B; InterPro: IPR009671 This entry occurs in several hypothetical bacterial proteins of around 120 residues in length. The function of these proteins is unknown. The protein structure has been determined for one member of this group, the hypothetical protein VCO424 from Vibrio cholerae; it has an alpha+beta sandwich fold.; PDB: 1NXI_A.
Probab=26.17 E-value=1.3e+02 Score=23.87 Aligned_cols=71 Identities=15% Similarity=0.089 Sum_probs=38.8
Q ss_pred EEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHHHHHhhh
Q 020794 44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNA 115 (321)
Q Consensus 44 Iltv~G~Dr~GIVA~VS~~La~~G~NI~d~~q~~~~l~g~F~Mr~~v~~~~~~~~~~~L~~~L~~la~~lg~ 115 (321)
-..+..+|..- ..++...+.+.|..|...........+.|...+..........+.++...|.++|++++.
T Consensus 27 eh~~~f~~~~~-~~~f~~~~~~~g~~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~I~~~~~~l~~lA~~~~g 97 (104)
T PF06877_consen 27 EHWFYFEDEED-AEKFAEELEKLGYEVESAEEDEEDGDGPYCLDISREMVLDYEDINAITQELEDLAKEFGG 97 (104)
T ss_dssp EEEEEES-HHH-HHHHHHHHHHHS---B----B-SS-SSBEEEEEEEEE-S-HHHHHHHHHHHHHHHHHHT-
T ss_pred EEEEEeCCHHH-HHHHHHHHHHCCCEEEEeecccCCCCceEEEEEEEecCCCHHHHHHHHHHHHHHHHHhCc
Confidence 34455555544 466678999999997776552222345555555544433334688889999999999975
No 387
>PRK04998 hypothetical protein; Provisional
Probab=26.15 E-value=3.3e+02 Score=21.51 Aligned_cols=66 Identities=14% Similarity=0.096 Sum_probs=45.2
Q ss_pred cEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEE-EEEEEEeCCCCCChHHHHHHHHHHHHH
Q 020794 42 HGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFY-SRSEFIFDPIKWPREQMDEDFFKLSKM 112 (321)
Q Consensus 42 ~~Iltv~G~Dr~GIVA~VS~~La~~G~NI~d~~q~~~~l~g~F~-Mr~~v~~~~~~~~~~~L~~~L~~la~~ 112 (321)
.+-+.++|+...+.+++|...+.++...-..+... .+.+|.|. ..+.+.+. +.+++.+-++++.+.
T Consensus 15 ~~~~Kvig~~~~~~~~~v~~v~~~~~~~~~~~~~r-~S~~GkY~Svtv~v~v~----s~eq~~~iY~~L~~~ 81 (88)
T PRK04998 15 SFTYKVMGLARPELVDQVVEVVQRHAPGDYTPTVK-PSSKGNYHSVSITITAT----SIEQVETLYEELAKI 81 (88)
T ss_pred CceEEEEEeCcHhHHHHHHHHHHHhCCCCCCceEc-cCCCCEEEEEEEEEEEC----CHHHHHHHHHHHhcC
Confidence 46789999999999999999998774432112111 24589987 44445554 468888877777653
No 388
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=25.72 E-value=1.1e+02 Score=31.34 Aligned_cols=75 Identities=12% Similarity=0.212 Sum_probs=41.7
Q ss_pred eeEEEEEeCCchh---HHHHHHhhhcCCcC-eeEEEEEeCCCCCC--CchHHHHHHHcCCCEEEEcCCcchhHHHHHHHh
Q 020794 129 YKVAVLASKQEHC---LVDFLYGWQEGKLP-VEITCVISNHDRGP--NSHVIRFLERHGIPYHYLCAKENEREEELLELV 202 (321)
Q Consensus 129 ~rIavl~S~~g~~---l~~lL~~~~~~~l~-~~i~~Vis~~~~~~--~~~v~~~a~~~gIP~~~~~~~~~~~~~~~~~~l 202 (321)
|||+|+|.|+.-. +.+|+.. ...|+ .+|+++=.+..+.. ..-+.++++++|.++.+.... +..+.|
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~--~~~l~~~ei~L~DId~~rl~~v~~l~~~~~~~~g~~~~v~~Tt------dr~eAl 72 (437)
T cd05298 1 FKIVIAGGGSTYTPGIVKSLLDR--KEDFPLRELVLYDIDAERQEKVAEAVKILFKENYPEIKFVYTT------DPEEAF 72 (437)
T ss_pred CeEEEECCcHHHHHHHHHHHHhC--cccCCCCEEEEECCCHHHHHHHHHHHHHHHHhhCCCeEEEEEC------CHHHHh
Confidence 6999999887522 3344432 12455 56666533332211 123355667788887654321 234455
Q ss_pred cCCCEEEEE
Q 020794 203 QNTDFLVLA 211 (321)
Q Consensus 203 ~~~Dlivla 211 (321)
+++|+|++.
T Consensus 73 ~gADfVi~~ 81 (437)
T cd05298 73 TDADFVFAQ 81 (437)
T ss_pred CCCCEEEEE
Confidence 689998764
No 389
>PLN02840 tRNA dimethylallyltransferase
Probab=25.56 E-value=5e+02 Score=26.78 Aligned_cols=97 Identities=20% Similarity=0.237 Sum_probs=59.2
Q ss_pred CCcccEEEEEEcCCccchHHHHHHHHHhc-CCeEeEeeee--------------ccCCCC-eEEEEEEEEeCCCCCChHH
Q 020794 38 PTLTHGIHVFHCPDEVGIVAKLSECIASR-GGNILAADVF--------------VPEKKN-VFYSRSEFIFDPIKWPREQ 101 (321)
Q Consensus 38 ~~~~~~Iltv~G~Dr~GIVA~VS~~La~~-G~NI~d~~q~--------------~~~l~g-~F~Mr~~v~~~~~~~~~~~ 101 (321)
+.....++.+.||.-.|== .++..|++. |+.|+..+.. ..+.++ ...++=.++.. ..++...
T Consensus 17 ~~~~~~vi~I~GptgsGKT-tla~~La~~~~~~iis~Ds~qvYr~~~IgTaKpt~eE~~~V~Hhlidil~p~-e~ySv~~ 94 (421)
T PLN02840 17 KTKKEKVIVISGPTGAGKS-RLALELAKRLNGEIISADSVQVYRGLDVGSAKPSLSERKEVPHHLIDILHPS-DDYSVGA 94 (421)
T ss_pred cccCCeEEEEECCCCCCHH-HHHHHHHHHCCCCeEeccccceecceeEEcCCCCHHHHcCCCeEeEeecCCC-CceeHHH
Confidence 4444568999999999973 445566655 7788776542 011122 12233333433 4577777
Q ss_pred HHHHHHHHHHHhhhccceeeeCCCCCCeeEEEEEeCCchhHHHHHHh
Q 020794 102 MDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYG 148 (321)
Q Consensus 102 L~~~L~~la~~lg~~~~~~r~~~~~~~~rIavl~S~~g~~l~~lL~~ 148 (321)
+.++..+..+++- .+-|+.|++-|+|-=+++|++.
T Consensus 95 F~~~A~~~I~~i~------------~rgkiPIvVGGTGlYl~aLl~G 129 (421)
T PLN02840 95 FFDDARRATQDIL------------NRGRVPIVAGGTGLYLRWYIYG 129 (421)
T ss_pred HHHHHHHHHHHHH------------hcCCCEEEEcCccHHHHHHhcC
Confidence 7666666555431 2347888888888778888775
No 390
>PRK14443 acylphosphatase; Provisional
Probab=25.50 E-value=2.8e+02 Score=22.36 Aligned_cols=58 Identities=17% Similarity=0.147 Sum_probs=41.8
Q ss_pred HHHHHHHHHHhhhccceeeeCCCCCCeeEEEEEeCCchhHHHHHHhhhcCCc-CeeEEEEEeC
Q 020794 103 DEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKL-PVEITCVISN 164 (321)
Q Consensus 103 ~~~L~~la~~lg~~~~~~r~~~~~~~~rIavl~S~~g~~l~~lL~~~~~~~l-~~~i~~Vis~ 164 (321)
+.-...+|.++|+.-|-.+.++ =.|-+.+.|....++.+++.+++|.. .++|..|...
T Consensus 20 R~~~~~~A~~~gl~G~V~N~~d----G~Vei~~qG~~~~l~~f~~~l~~g~p~~a~V~~v~~~ 78 (93)
T PRK14443 20 RYTTKHVAYKYDISGTVKNLDD----GSVEIHAIAEEENLNKFIDAIKKGPSPGCRIEHVYIY 78 (93)
T ss_pred cHHHHHHHHHcCCEEEEEECCC----CEEEEEEECCHHHHHHHHHHHhcCCCCcEEEEEEEEE
Confidence 4555667888998776433332 36788888888899999999998864 5788776543
No 391
>PRK14446 acylphosphatase; Provisional
Probab=25.23 E-value=2e+02 Score=22.94 Aligned_cols=57 Identities=12% Similarity=0.047 Sum_probs=40.7
Q ss_pred HHHHHHHHHhhhccceeeeCCCCCCeeEEEEEeCCchhHHHHHHhhhcCCcCeeEEEEEeC
Q 020794 104 EDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISN 164 (321)
Q Consensus 104 ~~L~~la~~lg~~~~~~r~~~~~~~~rIavl~S~~g~~l~~lL~~~~~~~l~~~i~~Vis~ 164 (321)
---..+|.++|+.-|-.+.++ -.|-+.+.|+...+..+++.+++|...++|..|...
T Consensus 19 ~fv~~~A~~lgl~G~V~N~~d----GsVei~~qG~~~~l~~f~~~l~~gP~~a~V~~v~~~ 75 (88)
T PRK14446 19 ASTRERAVALGLVGHARNQAD----GSVEVVAAGSAAALEALEAWLWQGPPAATVAAVTRT 75 (88)
T ss_pred HHHHHHHeeCCeEEEEEECCC----CCEEEEEEeCHHHHHHHHHHHhhCCCceEEEEEEEE
Confidence 344567888998776443332 357777788888899999998877656888776554
No 392
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=25.14 E-value=1.7e+02 Score=25.04 Aligned_cols=75 Identities=21% Similarity=0.288 Sum_probs=36.1
Q ss_pred eEEEEEeCCc-hhHHHHHHhhhcCCcCeeEEEEEeCCCCCCCchHHHHHHHcCCCE----EEEcCCcchhHHHHHHHhcC
Q 020794 130 KVAVLASKQE-HCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPY----HYLCAKENEREEELLELVQN 204 (321)
Q Consensus 130 rIavl~S~~g-~~l~~lL~~~~~~~l~~~i~~Vis~~~~~~~~~v~~~a~~~gIP~----~~~~~~~~~~~~~~~~~l~~ 204 (321)
||+|+|+|.. +.+..+|.. +| ++|. +.+.+. ..+..+-+++..+. ..++.... -..++.+.+++
T Consensus 1 KI~ViGaG~~G~AlA~~la~--~g---~~V~-l~~~~~----~~~~~i~~~~~n~~~~~~~~l~~~i~-~t~dl~~a~~~ 69 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLAD--NG---HEVT-LWGRDE----EQIEEINETRQNPKYLPGIKLPENIK-ATTDLEEALED 69 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHH--CT---EEEE-EETSCH----HHHHHHHHHTSETTTSTTSBEETTEE-EESSHHHHHTT
T ss_pred CEEEECcCHHHHHHHHHHHH--cC---CEEE-EEeccH----HHHHHHHHhCCCCCCCCCcccCcccc-cccCHHHHhCc
Confidence 7999999984 666666654 33 5665 333321 22333333333221 11121100 01234455668
Q ss_pred CCEEEEEeecc
Q 020794 205 TDFLVLARYMQ 215 (321)
Q Consensus 205 ~Dlivlag~~~ 215 (321)
+|+++++--.+
T Consensus 70 ad~IiiavPs~ 80 (157)
T PF01210_consen 70 ADIIIIAVPSQ 80 (157)
T ss_dssp -SEEEE-S-GG
T ss_pred ccEEEecccHH
Confidence 99999875444
No 393
>cd01422 MGS Methylglyoxal synthase catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The first part of the catalytic mechanism is believed to be similar to TIM (triosephosphate isomerase) in that both enzymes utilize DHAP to form an ene-diolate phosphate intermediate. In MGS, the second catalytic step is characterized by the elimination of phosphate and collapse of the enediolate to form methylglyoxal instead of reprotonation to form the isomer glyceraldehyde 3-phosphate, as in TIM. This is the first reaction in the methylglyoxal bypass of the Embden-Myerhoff glycolytic pathway and is believed to provide physiological benefits under non-ideal growth conditions in bacteria.
Probab=25.09 E-value=1.3e+02 Score=24.85 Aligned_cols=39 Identities=28% Similarity=0.295 Sum_probs=24.8
Q ss_pred HHHHhhhcCCcCeeEEEEEeCCCC-C--C----CchHHHHHHHcCCCEEE
Q 020794 144 DFLYGWQEGKLPVEITCVISNHDR-G--P----NSHVIRFLERHGIPYHY 186 (321)
Q Consensus 144 ~lL~~~~~~~l~~~i~~Vis~~~~-~--~----~~~v~~~a~~~gIP~~~ 186 (321)
.+++.+++| +|..||..+++ + + ...+++.|.+++||+..
T Consensus 61 ~i~~~i~~g----~i~~VInt~~~~~~~~~~~dg~~iRr~a~~~~Ip~~T 106 (115)
T cd01422 61 QIGALIAEG----EIDAVIFFRDPLTAQPHEPDVKALLRLCDVYNIPLAT 106 (115)
T ss_pred HHHHHHHcC----ceeEEEEcCCCCCCCcccccHHHHHHHHHHcCCCEEE
Confidence 355555566 56666655432 1 1 23567889999999985
No 394
>cd00115 LMWPc Substituted updates: Aug 22, 2001
Probab=24.89 E-value=2.1e+02 Score=23.91 Aligned_cols=81 Identities=17% Similarity=0.179 Sum_probs=41.7
Q ss_pred eeEEEEEeCCc--hh-HHHHHHhhhcCCcCeeE--EEEEeCC-CCCCCchHHHHHHHcCCCEEEEcCCcchhHHHHHHHh
Q 020794 129 YKVAVLASKQE--HC-LVDFLYGWQEGKLPVEI--TCVISNH-DRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELV 202 (321)
Q Consensus 129 ~rIavl~S~~g--~~-l~~lL~~~~~~~l~~~i--~~Vis~~-~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~~~~~l 202 (321)
+||.|+.+++- |. .++++.....+ ...++ +++...+ ....+..+.+.++++||+......+ ... +. .+
T Consensus 1 ~~iLfvc~~N~~RS~mAEai~~~~~~~-~~~~v~SaG~~~~~~g~~~~~~a~~~l~~~Gid~s~h~s~-~l~-~~---~~ 74 (141)
T cd00115 1 KKVLFVCTGNICRSPMAEAIFRHLAPK-LDIEVDSAGTSGWHVGGRPDPRAIAVLAEHGIDISGHRAR-QLT-ED---DF 74 (141)
T ss_pred CeEEEEecChhhhhHHHHHHHHHHhhh-CCEEEECCCCCCccCCCCCCHHHHHHHHHcCCCcccCeee-eCC-HH---HH
Confidence 47777776663 33 45576654332 12333 2222211 1233557788899999997321111 111 11 23
Q ss_pred cCCCEEEEEeecc
Q 020794 203 QNTDFLVLARYMQ 215 (321)
Q Consensus 203 ~~~Dlivlag~~~ 215 (321)
.++|+||+..-.+
T Consensus 75 ~~aDlIi~m~~~~ 87 (141)
T cd00115 75 DEFDLIITMDESN 87 (141)
T ss_pred HhCCEEEEECHHH
Confidence 3799999875443
No 395
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=24.89 E-value=3.9e+02 Score=25.14 Aligned_cols=79 Identities=18% Similarity=0.204 Sum_probs=41.7
Q ss_pred CeeEEEEEeCCc-hhH-HHHHHhhhcCCcCeeEEEEEeCCCCCCCchHHHHHHHcCCCEEEEcCCcchhHHHHHHHhcCC
Q 020794 128 KYKVAVLASKQE-HCL-VDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNT 205 (321)
Q Consensus 128 ~~rIavl~S~~g-~~l-~~lL~~~~~~~l~~~i~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~~~~~l~~~ 205 (321)
+.+|.|+..|.+ .++ ..+++.+.+-..+.++..|+.... +....+.++++.+. .+.... ..+++.+++..+
T Consensus 170 ~~~iLi~~GG~d~~~~~~~~l~~l~~~~~~~~i~vv~G~~~-~~~~~l~~~~~~~~-~i~~~~-----~~~~m~~lm~~a 242 (279)
T TIGR03590 170 LRRVLVSFGGADPDNLTLKLLSALAESQINISITLVTGSSN-PNLDELKKFAKEYP-NIILFI-----DVENMAELMNEA 242 (279)
T ss_pred cCeEEEEeCCcCCcCHHHHHHHHHhccccCceEEEEECCCC-cCHHHHHHHHHhCC-CEEEEe-----CHHHHHHHHHHC
Confidence 457777666554 343 355665543222456665554321 11224555555532 233222 234677777799
Q ss_pred CEEEEEee
Q 020794 206 DFLVLARY 213 (321)
Q Consensus 206 Dlivlag~ 213 (321)
|++|+++=
T Consensus 243 Dl~Is~~G 250 (279)
T TIGR03590 243 DLAIGAAG 250 (279)
T ss_pred CEEEECCc
Confidence 99998654
No 396
>PF02603 Hpr_kinase_N: HPr Serine kinase N terminus; InterPro: IPR011126 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the N-terminal region of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria []. This kinase in unusual in that it recognises the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes []. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller. The blades are formed by two N-terminal domains each, and the compact central hub assembles the C-terminal kinase domains []. ; GO: 0000155 two-component sensor activity, 0004672 protein kinase activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006109 regulation of carbohydrate metabolic process; PDB: 1KNX_B 1KO7_A.
Probab=24.82 E-value=19 Score=30.35 Aligned_cols=57 Identities=12% Similarity=0.184 Sum_probs=29.7
Q ss_pred CeeEEEEEeCCchhHH--------HHHHhhhcCCcCeeEE-EEEeCCCCCCCchHHHHHHHcCCCEEEEcC
Q 020794 128 KYKVAVLASKQEHCLV--------DFLYGWQEGKLPVEIT-CVISNHDRGPNSHVIRFLERHGIPYHYLCA 189 (321)
Q Consensus 128 ~~rIavl~S~~g~~l~--------~lL~~~~~~~l~~~i~-~Vis~~~~~~~~~v~~~a~~~gIP~~~~~~ 189 (321)
+.||-|+|..+-+=|. ..++..-. .++. .|+|.. -.+...+.+.|+++++|+...+.
T Consensus 48 ~~RIQiiG~~E~~yl~~l~~~~r~~~l~~l~~----~~~P~iIvt~~-~~~p~~l~e~a~~~~ipll~t~~ 113 (127)
T PF02603_consen 48 PNRIQIIGNTESAYLNSLDEEERKERLEKLFS----YNPPCIIVTRG-LEPPPELIELAEKYNIPLLRTPL 113 (127)
T ss_dssp TCSEEEE-HHHHHHHCCS-HHHHCCHHHHHCT----TT-S-EEEETT-T---HHHHHHHHHCT--EEEESS
T ss_pred CCeEEEEcHHHHHHHHHCCHHHHHHHHHHHhC----CCCCEEEEECc-CCCCHHHHHHHHHhCCcEEEcCC
Confidence 3499999977643211 22232222 2343 445544 33456789999999999997553
No 397
>PLN03194 putative disease resistance protein; Provisional
Probab=24.68 E-value=1e+02 Score=28.31 Aligned_cols=35 Identities=11% Similarity=-0.069 Sum_probs=28.1
Q ss_pred CCCCcccEEEEEEcCC-ccchHHHHHHHHHhcCCeE
Q 020794 36 VSPTLTHGIHVFHCPD-EVGIVAKLSECIASRGGNI 70 (321)
Q Consensus 36 ~~~~~~~~Iltv~G~D-r~GIVA~VS~~La~~G~NI 70 (321)
+|.....+.|...|+| |.+.+..+...|...|++.
T Consensus 22 ~~~~~yDVFISFrG~DtR~~FvshL~~aL~~~GI~v 57 (187)
T PLN03194 22 SSAKPCDVFINHRGIDTKRTIATLLYDHLSRLNLRP 57 (187)
T ss_pred CCCCCCcEEEeCCCccccccHHHHHHHHHHHCCCEE
Confidence 3333445679999999 7899999999999999775
No 398
>cd05015 SIS_PGI_1 Phosphoglucose isomerase (PGI) contains two SIS (Sugar ISomerase) domains. This classification is based on the alignment of the first SIS domain. PGI is a multifunctional enzyme which as an intracellular dimer catalyzes the reversible isomerization of glucose 6-phosphate to fructose 6-phosphate. As an extracellular protein, PGI also has functions equivalent to neuroleukin (NLK), autocrine motility factor (AMF), and maturation factor (MF). Evidence suggests that PGI, NLK, AMF, and MF are closely related or identical. NLK is a neurotrophic growth factor that promotes regeneration and survival of neurons. The dimeric form of NLK has isomerase function, whereas its monomeric form carries out neurotrophic activity. AMF is a cytokine that stimulates cell migration and metastasis. MF mediates the differentiation of human myeloid leukemic HL-60 cells to terminal monocytic cells.
Probab=24.64 E-value=1.3e+02 Score=26.01 Aligned_cols=58 Identities=17% Similarity=0.201 Sum_probs=33.1
Q ss_pred CCeeEEEEEeCCchhHHH------HHHhhhc-C--CcCeeEEEEEeCCCCCCCchHHHHHHHcCCCEEEEcC
Q 020794 127 PKYKVAVLASKQEHCLVD------FLYGWQE-G--KLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCA 189 (321)
Q Consensus 127 ~~~rIavl~S~~g~~l~~------lL~~~~~-~--~l~~~i~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~~ 189 (321)
++.=++|.+|++|...+. ..+.+++ + .....++ +||++ +.++.++|..++.++..++.
T Consensus 72 ~~~tlvi~iSkSG~T~Et~~~~~~a~~~l~~~~~~~~~~~~v-aiT~~----~s~l~~~a~~~~~~~~~~~~ 138 (158)
T cd05015 72 PETTLFIVISKSGTTLETLANARLAREWLEEAGGDDLAKHFV-AITDN----GSGLLKKAGIEGLNTFEIPD 138 (158)
T ss_pred cccEEEEEEECCcCCHHHHHHHHHHHHHHHHhccccccceEE-EEcCC----ChHHHHHcCCCcceeeeCCC
Confidence 345678888999854222 1111111 1 1234444 56664 34666668889999887764
No 399
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=24.52 E-value=2.5e+02 Score=25.66 Aligned_cols=67 Identities=25% Similarity=0.362 Sum_probs=38.9
Q ss_pred hHHHHHHhhhcCCcCeeEEEEEeCCCCCCCchHHHHHHHcCCCEEEEcCCcchhH-HHHHHHhc-CCCEEEEEee
Q 020794 141 CLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENERE-EELLELVQ-NTDFLVLARY 213 (321)
Q Consensus 141 ~l~~lL~~~~~~~l~~~i~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~-~~~~~~l~-~~Dlivlag~ 213 (321)
-+++-++..++.. .. ..|+||. ..+.+..+++..|||+.+-..|...+. ...++.+. .++-+++.|=
T Consensus 50 e~~~W~~e~k~~g--i~-v~vvSNn---~e~RV~~~~~~l~v~fi~~A~KP~~~~fr~Al~~m~l~~~~vvmVGD 118 (175)
T COG2179 50 ELRAWLAELKEAG--IK-VVVVSNN---KESRVARAAEKLGVPFIYRAKKPFGRAFRRALKEMNLPPEEVVMVGD 118 (175)
T ss_pred HHHHHHHHHHhcC--CE-EEEEeCC---CHHHHHhhhhhcCCceeecccCccHHHHHHHHHHcCCChhHEEEEcc
Confidence 3666665554432 23 4477775 356889999999999987554433221 22233333 5666666553
No 400
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=24.44 E-value=1.4e+02 Score=29.19 Aligned_cols=24 Identities=17% Similarity=0.115 Sum_probs=17.3
Q ss_pred CCCCeeEEEEEeCC-chhHHHHHHh
Q 020794 125 IDPKYKVAVLASKQ-EHCLVDFLYG 148 (321)
Q Consensus 125 ~~~~~rIavl~S~~-g~~l~~lL~~ 148 (321)
..+++||+|+++|. |+.+...|..
T Consensus 4 ~~~~mkI~IiGaGa~G~alA~~La~ 28 (341)
T PRK12439 4 AKREPKVVVLGGGSWGTTVASICAR 28 (341)
T ss_pred ccCCCeEEEECCCHHHHHHHHHHHH
Confidence 34568999999998 4556666653
No 401
>PRK04175 rpl7ae 50S ribosomal protein L7Ae; Validated
Probab=24.17 E-value=1.2e+02 Score=25.61 Aligned_cols=58 Identities=17% Similarity=0.306 Sum_probs=33.0
Q ss_pred EEeCCchhHHHHHHhhhcCCcCeeEEEEEeCCCCCCC--chHHHHHHHcCCCEEEEcCCcchhHHHHHHHhc
Q 020794 134 LASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPN--SHVIRFLERHGIPYHYLCAKENEREEELLELVQ 203 (321)
Q Consensus 134 l~S~~g~~l~~lL~~~~~~~l~~~i~~Vis~~~~~~~--~~v~~~a~~~gIP~~~~~~~~~~~~~~~~~~l~ 203 (321)
+++|...+++ .++.|+ +..+.+-.|-+ +.+ ..+..+|+++|||+.++..+ +++-+.+-
T Consensus 31 lv~G~~~v~k----aikkgk--akLVilA~D~s-~~~i~~~~~~lc~~~~Vp~~~~~tk-----~eLG~a~G 90 (122)
T PRK04175 31 IKKGTNETTK----AVERGI--AKLVVIAEDVD-PEEIVAHLPLLCEEKKIPYVYVPSK-----KDLGKAAG 90 (122)
T ss_pred EeEcHHHHHH----HHHcCC--ccEEEEeCCCC-hHHHHHHHHHHHHHcCCCEEEECCH-----HHHHHHhC
Confidence 5556555544 444553 44453433322 112 46788999999999877632 35555553
No 402
>PRK05925 aspartate kinase; Provisional
Probab=24.14 E-value=3.3e+02 Score=27.95 Aligned_cols=61 Identities=7% Similarity=-0.086 Sum_probs=44.4
Q ss_pred cccEEEEEEcCC--ccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHHHHHh
Q 020794 40 LTHGIHVFHCPD--EVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMF 113 (321)
Q Consensus 40 ~~~~Iltv~G~D--r~GIVA~VS~~La~~G~NI~d~~q~~~~l~g~F~Mr~~v~~~~~~~~~~~L~~~L~~la~~l 113 (321)
..-.+|+++|.. ++|+.+++.+.|++.|+||.-+.|... .+-+-+ +.++..+++..+-++|
T Consensus 370 ~~~a~VsvVG~gm~~~~v~~~~~~aL~~~~Ini~~i~~s~~--------~is~vV-----~~~d~~~av~~LH~~f 432 (440)
T PRK05925 370 GPLALITMIGAKLASWKVVRTFTEKLRGYQTPVFCWCQSDM--------ALNLVV-----NEELAVAVTELLHNDY 432 (440)
T ss_pred CCEEEEEEeCCCcccccHHHHHHHHHhhCCCCEEEEECCCc--------eEEEEE-----ehHHHHHHHHHHHHHH
Confidence 456789999962 378999999999999999999888421 112222 2356677888887776
No 403
>PLN02688 pyrroline-5-carboxylate reductase
Probab=24.08 E-value=2.9e+02 Score=25.40 Aligned_cols=66 Identities=15% Similarity=0.361 Sum_probs=33.0
Q ss_pred eeEEEEEeCC-chh-HHHHHHhhhcCCc-CeeEEEEEeCCCCCCCchHHHHHHHcCCCEEEEcCCcchhHHHHHHHhcCC
Q 020794 129 YKVAVLASKQ-EHC-LVDFLYGWQEGKL-PVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNT 205 (321)
Q Consensus 129 ~rIavl~S~~-g~~-l~~lL~~~~~~~l-~~~i~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~~~~~l~~~ 205 (321)
|||+|++.|. |.. ...|++ .|.+ +.+|. |+.++.. .-.+.+.+.|+... .. .. +.++++
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~---~g~~~~~~i~-v~~~r~~----~~~~~~~~~g~~~~--~~-----~~---e~~~~a 62 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVA---SGVVPPSRIS-TADDSNP----ARRDVFQSLGVKTA--AS-----NT---EVVKSS 62 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHH---CCCCCcceEE-EEeCCCH----HHHHHHHHcCCEEe--CC-----hH---HHHhcC
Confidence 6899998776 333 333443 2321 22433 3325421 22344556777432 11 11 223478
Q ss_pred CEEEEEe
Q 020794 206 DFLVLAR 212 (321)
Q Consensus 206 Dlivlag 212 (321)
|+++++-
T Consensus 63 DvVil~v 69 (266)
T PLN02688 63 DVIILAV 69 (266)
T ss_pred CEEEEEE
Confidence 9998885
No 404
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=24.08 E-value=5.7e+02 Score=23.56 Aligned_cols=117 Identities=11% Similarity=0.118 Sum_probs=70.1
Q ss_pred EEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHHHHHhhhccceeeeC
Q 020794 44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRVP 123 (321)
Q Consensus 44 Iltv~G~Dr~GIVA~VS~~La~~G~NI~d~~q~~~~l~g~F~Mr~~v~~~~~~~~~~~L~~~L~~la~~lg~~~~~~r~~ 123 (321)
++-|.=.+.+.-...+.+.|.+.|+.++|+..... .-.+.++.+.+++.
T Consensus 17 ~iaV~r~~~~~~a~~i~~al~~~Gi~~iEitl~~~----------------------~~~~~I~~l~~~~p--------- 65 (212)
T PRK05718 17 VVPVIVINKLEDAVPLAKALVAGGLPVLEVTLRTP----------------------AALEAIRLIAKEVP--------- 65 (212)
T ss_pred EEEEEEcCCHHHHHHHHHHHHHcCCCEEEEecCCc----------------------cHHHHHHHHHHHCC---------
Confidence 34444455666677889999999999999974321 11233444444331
Q ss_pred CCCCCeeEEEEEeCCchhHHHHHHhhhcCCcCeeEEEEEeCCCCCCCchHHHHHHHcCCCEEEEcCCcchhHHHHHHHhc
Q 020794 124 DIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ 203 (321)
Q Consensus 124 ~~~~~~rIavl~S~~g~~l~~lL~~~~~~~l~~~i~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~~~~~l~ 203 (321)
. +.++.|.-.+.++.-.....| ++. ++|.. -+..+.+.|.+++||+..-.. .-.|+.+..+
T Consensus 66 ----~---~~IGAGTVl~~~~a~~a~~aG---A~F--ivsP~---~~~~vi~~a~~~~i~~iPG~~----TptEi~~a~~ 126 (212)
T PRK05718 66 ----E---ALIGAGTVLNPEQLAQAIEAG---AQF--IVSPG---LTPPLLKAAQEGPIPLIPGVS----TPSELMLGME 126 (212)
T ss_pred ----C---CEEEEeeccCHHHHHHHHHcC---CCE--EECCC---CCHHHHHHHHHcCCCEeCCCC----CHHHHHHHHH
Confidence 1 224455544555554455555 343 44443 234899999999999884221 1224666665
Q ss_pred -CCCEEEE
Q 020794 204 -NTDFLVL 210 (321)
Q Consensus 204 -~~Dlivl 210 (321)
.+|++-+
T Consensus 127 ~Ga~~vKl 134 (212)
T PRK05718 127 LGLRTFKF 134 (212)
T ss_pred CCCCEEEE
Confidence 8898876
No 405
>PRK07283 hypothetical protein; Provisional
Probab=23.93 E-value=2.6e+02 Score=22.46 Aligned_cols=64 Identities=23% Similarity=0.256 Sum_probs=34.9
Q ss_pred EEeCCchhHHHHHHhhhcCCcCeeEEEEEeCCCCCC--CchHHHHHHHcCCCEEEEcCCcchhHHHHHHHhcCCCEEEEE
Q 020794 134 LASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGP--NSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDFLVLA 211 (321)
Q Consensus 134 l~S~~g~~l~~lL~~~~~~~l~~~i~~Vis~~~~~~--~~~v~~~a~~~gIP~~~~~~~~~~~~~~~~~~l~~~Dlivla 211 (321)
+++|...+++++ +.|+ +.. |+...|-.+ ...+.+.|+.++||+..+.. .+|+-..+-++ ..|++
T Consensus 19 lv~G~~~v~~ai----k~gk--~~l--Vi~A~Das~~~~kk~~~~~~~~~Vp~~~~~t-----~~eLG~a~Gk~-~~vva 84 (98)
T PRK07283 19 IISGEELVVKAI----QSGQ--AKL--VFLANDAGPNLTKKVTDKSNYYQVEVSTVFS-----TLELSAAVGKP-RKVLA 84 (98)
T ss_pred eeEcHHHHHHHH----HcCC--ccE--EEEeCCCCHHHHHHHHHHHHHcCCCEEEeCC-----HHHHHHHhCCC-ceEEE
Confidence 566766655544 4453 333 443333222 23566889999999986642 23555555343 44443
No 406
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=23.85 E-value=2.8e+02 Score=24.23 Aligned_cols=116 Identities=16% Similarity=0.265 Sum_probs=64.1
Q ss_pred CCeeEEEEEeCC-chhHHHHHHhhhcCCcCeeEEEEEeCCCCCCCchHHHHHHHcCCCEEEEcCCcchhHHHHHHHhcCC
Q 020794 127 PKYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNT 205 (321)
Q Consensus 127 ~~~rIavl~S~~-g~~l~~lL~~~~~~~l~~~i~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~~~~~l~~~ 205 (321)
..++|+|+|.|. |..+..++..+ ..+|.++ .... .-...+.+.++.+. ++.+++.++
T Consensus 35 ~g~tvgIiG~G~IG~~vA~~l~~f-----G~~V~~~-d~~~-----~~~~~~~~~~~~~~-----------~l~ell~~a 92 (178)
T PF02826_consen 35 RGKTVGIIGYGRIGRAVARRLKAF-----GMRVIGY-DRSP-----KPEEGADEFGVEYV-----------SLDELLAQA 92 (178)
T ss_dssp TTSEEEEESTSHHHHHHHHHHHHT-----T-EEEEE-ESSC-----HHHHHHHHTTEEES-----------SHHHHHHH-
T ss_pred CCCEEEEEEEcCCcCeEeeeeecC-----CceeEEe-cccC-----Chhhhcccccceee-----------ehhhhcchh
Confidence 457999998776 55555565542 3555533 2221 11112344444221 233444579
Q ss_pred CEEEEEeeccccchhhHhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeEEecCCCCCCCCCC----hHHHHHHH
Q 020794 206 DFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGG----KPAKQAFD 281 (321)
Q Consensus 206 Dlivlag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~l~~~~~~~INiHpslLP~yrG~----~pi~~Ai~ 281 (321)
|++++.- | .+-.-++++..++++..+.+.+=+.-| ||. ..+.+|+.
T Consensus 93 Div~~~~-----p--------------------lt~~T~~li~~~~l~~mk~ga~lvN~a-----RG~~vde~aL~~aL~ 142 (178)
T PF02826_consen 93 DIVSLHL-----P--------------------LTPETRGLINAEFLAKMKPGAVLVNVA-----RGELVDEDALLDALE 142 (178)
T ss_dssp SEEEE-S-----S--------------------SSTTTTTSBSHHHHHTSTTTEEEEESS-----SGGGB-HHHHHHHHH
T ss_pred hhhhhhh-----c--------------------cccccceeeeeeeeeccccceEEEecc-----chhhhhhhHHHHHHh
Confidence 9998752 2 122334599999999999876555444 664 56778888
Q ss_pred hCCCeeEEEEEEec
Q 020794 282 AGVKLIGATSHFVT 295 (321)
Q Consensus 282 ~G~~~~G~TvH~v~ 295 (321)
+|. ..|+-+=..+
T Consensus 143 ~g~-i~ga~lDV~~ 155 (178)
T PF02826_consen 143 SGK-IAGAALDVFE 155 (178)
T ss_dssp TTS-EEEEEESS-S
T ss_pred hcc-CceEEEECCC
Confidence 885 4555544333
No 407
>TIGR03023 WcaJ_sugtrans Undecaprenyl-phosphate glucose phosphotransferase. Colanic acid biosynthesis utilizes a glucose-undecaprenyl carrier, knockout of EpsB abolishes incorporation of UDP-glucose into the lipid phase and the C-terminal portion of GumD has been shown to be responsible for the glucosyl-1-transferase activity.
Probab=23.72 E-value=6.9e+02 Score=25.08 Aligned_cols=60 Identities=5% Similarity=0.073 Sum_probs=33.6
Q ss_pred CCeeEEEEEeCCchhHHHHHHhhhc-CCcCeeEEEEEeCCCCCCC-----------chHHHHHHHcCCCEEEEc
Q 020794 127 PKYKVAVLASKQEHCLVDFLYGWQE-GKLPVEITCVISNHDRGPN-----------SHVIRFLERHGIPYHYLC 188 (321)
Q Consensus 127 ~~~rIavl~S~~g~~l~~lL~~~~~-~~l~~~i~~Vis~~~~~~~-----------~~v~~~a~~~gIP~~~~~ 188 (321)
..+|+.|+|+++. .+.+....+. +....++++++.+.+.... ..+.+.+++++|....+.
T Consensus 127 ~~~rvLIiGag~~--~~~l~~~L~~~~~~g~~vvG~idd~~~~~~~~~gvpVlg~~~dl~~~i~~~~vd~ViIA 198 (451)
T TIGR03023 127 NLRRVLIVGAGEL--GRRLAERLARNPELGYRVVGFFDDRPDARTGVRGVPVLGKLDDLEELIREGEVDEVYIA 198 (451)
T ss_pred CCCcEEEEeCCHH--HHHHHHHHHhCccCCcEEEEEEeCCCccccccCCCCccCCHHHHHHHHHhcCCCEEEEe
Confidence 3568888887653 3344444332 3446889998876432110 124455666666655544
No 408
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=23.49 E-value=1.2e+02 Score=25.17 Aligned_cols=35 Identities=14% Similarity=0.146 Sum_probs=24.0
Q ss_pred eeEEEEEeCCchhHH--HHHHhhhcCCcCeeEEEEEeCC
Q 020794 129 YKVAVLASKQEHCLV--DFLYGWQEGKLPVEITCVISNH 165 (321)
Q Consensus 129 ~rIavl~S~~g~~l~--~lL~~~~~~~l~~~i~~Vis~~ 165 (321)
|||++.+||....++ +++...++. ..+|..|+|..
T Consensus 1 k~i~l~vtGs~~~~~~~~~l~~L~~~--g~~v~vv~S~~ 37 (129)
T PF02441_consen 1 KRILLGVTGSIAAYKAPDLLRRLKRA--GWEVRVVLSPS 37 (129)
T ss_dssp -EEEEEE-SSGGGGGHHHHHHHHHTT--TSEEEEEESHH
T ss_pred CEEEEEEECHHHHHHHHHHHHHHhhC--CCEEEEEECCc
Confidence 699999999976544 566666544 47888888764
No 409
>PHA00771 head assembly protein
Probab=23.34 E-value=1.1e+02 Score=26.72 Aligned_cols=49 Identities=16% Similarity=0.240 Sum_probs=37.1
Q ss_pred eEEecCCCCCCCCCChH----HHHHHHhCCCeeEEEEEEecCCCCCCCeEEEE
Q 020794 259 VINIHHGLLPSFKGGKP----AKQAFDAGVKLIGATSHFVTEELDAGPIIEQM 307 (321)
Q Consensus 259 ~INiHpslLP~yrG~~p----i~~Ai~~G~~~~G~TvH~v~~~~D~G~Ii~Q~ 307 (321)
++-.|+=.+|.|||... .+|-+.---...-+++-++.+..--|.++.|.
T Consensus 62 ~~ecHa~y~P~fRG~ya~~~r~F~kwlL~Nt~f~~vit~vp~kt~~G~vic~l 114 (151)
T PHA00771 62 TFDCHAMYLPEIRGFSKEIGLAFWRYILTNTTVQCVTSFAARKFRHGQMYCAM 114 (151)
T ss_pred EEEEEeeeCccccchhHHHHHHHHHHHhcCCceeEEEEecccccccchhhhhh
Confidence 89999999999999764 34444444455667777888888889888764
No 410
>PF07485 DUF1529: Domain of Unknown Function (DUF1259); InterPro: IPR011094 This family is the lppY/lpqO homologue family. They are related to 'probable conserved lipoproteins' LppY and LpqO from Mycobacterium bovis.
Probab=23.29 E-value=4e+02 Score=22.73 Aligned_cols=49 Identities=10% Similarity=0.017 Sum_probs=34.0
Q ss_pred hHHHHHHHHHhcCCeEeEeeeeccCCCCe-EEEEEEEEeCCCCCChHHHHHHHHH
Q 020794 55 IVAKLSECIASRGGNILAADVFVPEKKNV-FYSRSEFIFDPIKWPREQMDEDFFK 108 (321)
Q Consensus 55 IVA~VS~~La~~G~NI~d~~q~~~~l~g~-F~Mr~~v~~~~~~~~~~~L~~~L~~ 108 (321)
=|..|.+.|.++|+.|+.+..+....+.. |+|.+.-. + +...|.+.+++
T Consensus 69 EV~pvi~aL~~~GI~vtAlHNH~l~e~Prl~ymH~~~~--g---dp~~lA~~vr~ 118 (123)
T PF07485_consen 69 EVNPVISALRKNGIEVTALHNHWLFEQPRLFYMHIWGV--G---DPAKLARKVRA 118 (123)
T ss_pred HHHHHHHHHHHCCceEEEEecccccCCCCEEEEEEEec--C---CHHHHHHHHHH
Confidence 46788999999999999998886544444 66665432 2 45556665554
No 411
>cd01997 GMP_synthase_C The C-terminal domain of GMP synthetase. It contains two subdomains; the ATP pyrophosphatase domain which closes to the N-termial and the dimerization domain at C-terminal end. The ATP-PPase is a twisted, five-stranded parallel beta-sheet sandwiched between helical layers. It has a signature nucleotide-binding motif, or P-loop, at the end of the first-beta strand.The dimerization domain formed by the C-terminal 115 amino acid for prokaryotic proteins. It is adjacent to teh ATP-binding site of the ATP-PPase subdomain. The largest difference between the primary sequence of prokaryotic and eukaryotic GMP synthetase map to the dimerization domain.Eukaryotic GMP synthetase has several large insertions relative to prokaryotes.
Probab=23.27 E-value=2.3e+02 Score=27.51 Aligned_cols=56 Identities=18% Similarity=0.064 Sum_probs=36.9
Q ss_pred eEEEEEeCCc--hhHHHHHHhhhcCCcCeeEEEEEeCCCCCC---CchHHHHHHHcCC-CEEEEcC
Q 020794 130 KVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGP---NSHVIRFLERHGI-PYHYLCA 189 (321)
Q Consensus 130 rIavl~S~~g--~~l~~lL~~~~~~~l~~~i~~Vis~~~~~~---~~~v~~~a~~~gI-P~~~~~~ 189 (321)
||++..||.- +.+..++... .| .++.+|..++.-.+ ...+.++|+++|+ |++.++.
T Consensus 1 kVlVa~SGGVDSsvla~ll~~~-lG---~~v~aV~vd~g~~~~~E~~~~~~~~~~~g~i~~~vvd~ 62 (295)
T cd01997 1 KVILALSGGVDSTVAAVLLHKA-IG---DRLTCVFVDNGLLRKNEAERVEELFSKLLGINLIVVDA 62 (295)
T ss_pred CEEEEEcCChHHHHHHHHHHHH-hC---CcEEEEEecCCCCChHHHHHHHHHHHHhCCCcEEEEcC
Confidence 6788889873 4455555542 23 46788877764211 2367888988886 9998874
No 412
>TIGR03677 rpl7ae 50S ribosomal protein L7Ae. Multifunctional RNA-binding protein that recognizes the K-turn motif in ribosomal RNA, box H/ACA, box C/D and box C'/D' sRNAs. Interacts with protein L15e.
Probab=23.14 E-value=1.5e+02 Score=24.70 Aligned_cols=28 Identities=32% Similarity=0.551 Sum_probs=19.8
Q ss_pred chHHHHHHHcCCCEEEEcCCcchhHHHHHHHhc
Q 020794 171 SHVIRFLERHGIPYHYLCAKENEREEELLELVQ 203 (321)
Q Consensus 171 ~~v~~~a~~~gIP~~~~~~~~~~~~~~~~~~l~ 203 (321)
..+..+|++++||+.++.. .+++=+.+-
T Consensus 59 ~~i~~lc~~~~Ip~~~~~s-----k~eLG~a~G 86 (117)
T TIGR03677 59 AHLPALCEEKGIPYVYVKK-----KEDLGAAAG 86 (117)
T ss_pred HHHHHHHHHcCCCEEEeCC-----HHHHHHHhC
Confidence 4678889999999887653 235555553
No 413
>COG1412 Uncharacterized proteins of PilT N-term./Vapc superfamily [General function prediction only]
Probab=22.77 E-value=1.3e+02 Score=26.14 Aligned_cols=26 Identities=31% Similarity=0.327 Sum_probs=20.2
Q ss_pred EEEEEeCCCCCCCchHHHHHHHcCCCEEEEc
Q 020794 158 ITCVISNHDRGPNSHVIRFLERHGIPYHYLC 188 (321)
Q Consensus 158 i~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~ 188 (321)
-+.|+||. -.+.+.+.+.|||+.++.
T Consensus 99 ~~iVaTnD-----~eLk~rlr~~GIPvi~lr 124 (136)
T COG1412 99 RYIVATND-----KELKRRLRENGIPVITLR 124 (136)
T ss_pred CEEEEeCC-----HHHHHHHHHcCCCEEEEe
Confidence 35566764 368999999999999876
No 414
>TIGR00096 probable S-adenosylmethionine-dependent methyltransferase, YraL family. No member of this family is characterized, but Pfam model pfam00590 (tetrapyrrole methylase) demonstrates homology between this family and its other members, which include several methylases for the tetrapyrrole class of compound, as well as the enzyme diphthine synthase.
Probab=22.67 E-value=7e+02 Score=24.07 Aligned_cols=65 Identities=15% Similarity=0.117 Sum_probs=42.6
Q ss_pred HHHHHHhhhcCCcCeeEEEEEeCCCCC----CCchHHHHHHHcCCCEEEEcCCcchhHHHHHHHh-c---CCCEEEEEee
Q 020794 142 LVDFLYGWQEGKLPVEITCVISNHDRG----PNSHVIRFLERHGIPYHYLCAKENEREEELLELV-Q---NTDFLVLARY 213 (321)
Q Consensus 142 l~~lL~~~~~~~l~~~i~~Vis~~~~~----~~~~v~~~a~~~gIP~~~~~~~~~~~~~~~~~~l-~---~~Dlivlag~ 213 (321)
...+++..+.|+ -++++|+.--+ |+..+.+.|.++||++..++- .. .+...+ . ..|..+..||
T Consensus 62 ~~~l~~~l~~g~----~valvSDAG~P~ISDPG~~LV~~~~~~~i~v~~ipG----~s-A~~~Al~~SG~~~~~f~F~GF 132 (276)
T TIGR00096 62 QNLLAAKLEIGN----NIAVSSDAGPPLISDPGHLLVACREKANIIVVPLPG----AA-ALTAALCASGPATDRFFFGGF 132 (276)
T ss_pred HHHHHHHHHcCC----cEEEEecCCCCCcCCccHHHHHHHHHCCCeEEcCCh----HH-HHHHHHHhcCCCCCceEEeee
Confidence 445666666663 36788875322 457889999999999988762 12 233333 2 4688888999
Q ss_pred cc
Q 020794 214 MQ 215 (321)
Q Consensus 214 ~~ 215 (321)
..
T Consensus 133 lp 134 (276)
T TIGR00096 133 LP 134 (276)
T ss_pred CC
Confidence 75
No 415
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=22.64 E-value=5.4e+02 Score=25.80 Aligned_cols=112 Identities=19% Similarity=0.115 Sum_probs=56.2
Q ss_pred CCChHHHHHHHHHHHHHhhhccc-e---ee---------eCCCCCCeeEEEEEeCCc-hhHHHHHHhhhcCCcCeeEEEE
Q 020794 96 KWPREQMDEDFFKLSKMFNAMRS-V---VR---------VPDIDPKYKVAVLASKQE-HCLVDFLYGWQEGKLPVEITCV 161 (321)
Q Consensus 96 ~~~~~~L~~~L~~la~~lg~~~~-~---~r---------~~~~~~~~rIavl~S~~g-~~l~~lL~~~~~~~l~~~i~~V 161 (321)
....++..+-|+++++.+|.... . .| ....-..+|++|.+...- ..+..+|.. +..+++.|
T Consensus 254 p~G~~~t~~~l~~l~~~~g~~~~~~~~~~r~~~~~~~~~~~~~l~gk~v~i~~~~~~~~~l~~~L~e-----~G~~v~~v 328 (428)
T cd01965 254 PIGLKATDEFLRALSKLSGKPIPEELERERGRLLDAMLDSHFYLGGKRVAIAGDPDLLLGLSRFLLE-----MGAEPVAA 328 (428)
T ss_pred CcChHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEcChHHHHHHHHHHHH-----cCCcceEE
Confidence 35566667777777766654320 0 00 001123578988763321 123334432 34678877
Q ss_pred EeCCCCCCCc-hHHHHHHHcCCCEEEEcCCcchhHHHHHHHhc--CCCEEEEEeecc
Q 020794 162 ISNHDRGPNS-HVIRFLERHGIPYHYLCAKENEREEELLELVQ--NTDFLVLARYMQ 215 (321)
Q Consensus 162 is~~~~~~~~-~v~~~a~~~gIP~~~~~~~~~~~~~~~~~~l~--~~Dlivlag~~~ 215 (321)
++........ ......+..+++...+.. ....++.++++ ++|+++-..+.+
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~---~d~~el~~~i~~~~pdliig~~~~~ 382 (428)
T cd01965 329 VTGTDNPPFEKRMELLASLEGIPAEVVFV---GDLWDLESLAKEEPVDLLIGNSHGR 382 (428)
T ss_pred EEcCCCchhHHHHHHhhhhcCCCceEEEC---CCHHHHHHHhhccCCCEEEECchhH
Confidence 7765432211 111122234555444332 23456777776 699998765544
No 416
>COG0528 PyrH Uridylate kinase [Nucleotide transport and metabolism]
Probab=22.60 E-value=2.8e+02 Score=26.53 Aligned_cols=17 Identities=18% Similarity=0.337 Sum_probs=14.4
Q ss_pred hHHHHHHHcCCCEEEEc
Q 020794 172 HVIRFLERHGIPYHYLC 188 (321)
Q Consensus 172 ~v~~~a~~~gIP~~~~~ 188 (321)
-....|++++||+.+++
T Consensus 200 tA~~l~~~~~i~i~Vfn 216 (238)
T COG0528 200 TAFSLARDNGIPIIVFN 216 (238)
T ss_pred HHHHHHHHcCCcEEEEe
Confidence 35788999999999887
No 417
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=22.42 E-value=4.8e+02 Score=24.97 Aligned_cols=68 Identities=24% Similarity=0.347 Sum_probs=41.1
Q ss_pred HHHHHHhhhcCCcCeeEEEEEeCCCCCCCchH--HHHHHHcC--CCEEEEcCCcchhHHHHHHHhc--CCCEEEEEeecc
Q 020794 142 LVDFLYGWQEGKLPVEITCVISNHDRGPNSHV--IRFLERHG--IPYHYLCAKENEREEELLELVQ--NTDFLVLARYMQ 215 (321)
Q Consensus 142 l~~lL~~~~~~~l~~~i~~Vis~~~~~~~~~v--~~~a~~~g--IP~~~~~~~~~~~~~~~~~~l~--~~Dlivlag~~~ 215 (321)
|++|..++.+..+ .+|..+|.|+... .+.. ..+..+.. ||++.-+. .+.++.++|. +-|++|.-+.++
T Consensus 48 le~Lr~kL~~~g~-~~I~f~vVN~~~~-~s~~~~~~l~~r~~~~ipVyqq~~----~q~dvW~~L~G~kdD~~iyDRCGr 121 (238)
T PF04592_consen 48 LEDLREKLENEGL-SNISFMVVNHQGE-HSRLKYWELKRRVSEHIPVYQQDE----NQPDVWELLNGSKDDFLIYDRCGR 121 (238)
T ss_pred HHHHHHHHHHCCC-CceEEEEEcCCCc-chhHHHHHHHHhCCCCCceecCCc----cccCHHHHhCCCcCcEEEEeccCc
Confidence 3445444444433 4788888887542 3333 23444444 89875332 2346788886 689999888887
No 418
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=22.32 E-value=2.7e+02 Score=28.38 Aligned_cols=73 Identities=19% Similarity=0.248 Sum_probs=40.2
Q ss_pred CeeEEEEEeCC-chhHHHHHHhhhcCCcCeeEEEEEeCCCCCCCchHHHHHHHc--CCCEEEEcCCcchhHHHHHHHhcC
Q 020794 128 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERH--GIPYHYLCAKENEREEELLELVQN 204 (321)
Q Consensus 128 ~~rIavl~S~~-g~~l~~lL~~~~~~~l~~~i~~Vis~~~~~~~~~v~~~a~~~--gIP~~~~~~~~~~~~~~~~~~l~~ 204 (321)
++||.|+|+|. |+.....|. +.+. .+|+.. ++. .....+.+... ++.+..++.. ..+++.+++++
T Consensus 1 m~~ilviGaG~Vg~~va~~la--~~~d--~~V~iA--dRs---~~~~~~i~~~~~~~v~~~~vD~~---d~~al~~li~~ 68 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLA--QNGD--GEVTIA--DRS---KEKCARIAELIGGKVEALQVDAA---DVDALVALIKD 68 (389)
T ss_pred CCcEEEECCchhHHHHHHHHH--hCCC--ceEEEE--eCC---HHHHHHHHhhccccceeEEeccc---ChHHHHHHHhc
Confidence 47999999976 444333332 2343 566533 331 12233333322 4777776632 23567788877
Q ss_pred CCEEEEEe
Q 020794 205 TDFLVLAR 212 (321)
Q Consensus 205 ~Dlivlag 212 (321)
.|+++.+.
T Consensus 69 ~d~VIn~~ 76 (389)
T COG1748 69 FDLVINAA 76 (389)
T ss_pred CCEEEEeC
Confidence 78887763
No 419
>PRK14424 acylphosphatase; Provisional
Probab=22.32 E-value=3.6e+02 Score=21.77 Aligned_cols=58 Identities=12% Similarity=0.059 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHhhhccceeeeCCCCCCeeEEEEEeCCchhHHHHHHhhhcCCcCeeEEEEEe
Q 020794 102 MDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVIS 163 (321)
Q Consensus 102 L~~~L~~la~~lg~~~~~~r~~~~~~~~rIavl~S~~g~~l~~lL~~~~~~~l~~~i~~Vis 163 (321)
++--...+|.++|+.-|--+.++ -.|-+.+.|....++.++..++++...++|.-|..
T Consensus 22 FR~~v~~~A~~~gl~G~V~N~~d----G~Vei~~qG~~~~v~~f~~~l~~gp~~a~V~~v~~ 79 (94)
T PRK14424 22 FRHATVREAHALGLRGWVANLED----GTVEAMIQGPAAQIDRMLAWLRHGPPAARVTEVTF 79 (94)
T ss_pred hHHHHHHHHHHcCCeEEEEECCC----CCEEEEEEECHHHHHHHHHHHHhCCCCcEEEEEEE
Confidence 45666778889998765333322 26778888888889999998887754567665543
No 420
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=22.19 E-value=1.3e+02 Score=24.87 Aligned_cols=34 Identities=6% Similarity=0.240 Sum_probs=21.1
Q ss_pred eeEEEEEe-CC-chhHHHHHHhhhcCCcCeeEEEEEeCCC
Q 020794 129 YKVAVLAS-KQ-EHCLVDFLYGWQEGKLPVEITCVISNHD 166 (321)
Q Consensus 129 ~rIavl~S-~~-g~~l~~lL~~~~~~~l~~~i~~Vis~~~ 166 (321)
+||++.+. |. |+-+...+.. .. ..++++++..++
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~--~~--~~~lv~~v~~~~ 36 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILE--SP--GFELVGAVDRKP 36 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHH--ST--TEEEEEEEETTT
T ss_pred CEEEEECCCCHHHHHHHHHHHh--cC--CcEEEEEEecCC
Confidence 58888876 44 4444433332 12 489999888765
No 421
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=22.18 E-value=1.7e+02 Score=23.98 Aligned_cols=36 Identities=14% Similarity=0.306 Sum_probs=24.5
Q ss_pred hHHHHHHHcCCCEEEEcCCcchhHHHHHHHhcCCCEEEEE
Q 020794 172 HVIRFLERHGIPYHYLCAKENEREEELLELVQNTDFLVLA 211 (321)
Q Consensus 172 ~v~~~a~~~gIP~~~~~~~~~~~~~~~~~~l~~~Dlivla 211 (321)
.+.++|+++|+++..... +..++.+.+.+.|+++++
T Consensus 19 km~~~a~~~gi~~~i~a~----~~~e~~~~~~~~Dvill~ 54 (99)
T cd05565 19 ALNKGAKERGVPLEAAAG----AYGSHYDMIPDYDLVILA 54 (99)
T ss_pred HHHHHHHHCCCcEEEEEe----eHHHHHHhccCCCEEEEc
Confidence 357889999999876432 233455555588988776
No 422
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=22.15 E-value=8.2e+02 Score=24.66 Aligned_cols=94 Identities=15% Similarity=0.163 Sum_probs=0.0
Q ss_pred EEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHHHHHhhhccceeeeCC
Q 020794 45 HVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRVPD 124 (321)
Q Consensus 45 ltv~G~Dr~GIVA~VS~~La~~G~NI~d~~q~~~~l~g~F~Mr~~v~~~~~~~~~~~L~~~L~~la~~lg~~~~~~r~~~ 124 (321)
+.|.|. +..+..++++|.+.|..+.-+.. ....+.+++.+++..++.+.
T Consensus 303 v~v~g~--~~~~~~l~~~L~elG~~~~~v~~--------------------~~~~~~~~~~l~~~~~~~~~--------- 351 (429)
T cd03466 303 AAIYGE--PDFVVAITRFVLENGMVPVLIAT--------------------GSESKKLKEKLEEDLKEYVE--------- 351 (429)
T ss_pred EEEEcC--HHHHHHHHHHHHHCCCEEEEEEe--------------------CCCChHHHHHHHHHHHhcCC---------
Q ss_pred CCCCeeEEEEEeCCchhHHHHHHhhhcCCcCeeEEEEEeCCCCCCCchHHHHHHHcCCCEEEE
Q 020794 125 IDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYL 187 (321)
Q Consensus 125 ~~~~~rIavl~S~~g~~l~~lL~~~~~~~l~~~i~~Vis~~~~~~~~~v~~~a~~~gIP~~~~ 187 (321)
.+.|.-.+...-++++++. .+.-.++.+. .....|++.|||+..+
T Consensus 352 -----~~~v~~~~d~~e~~~~l~~-------~~~dliiG~s------~~~~~a~~~~ip~~~~ 396 (429)
T cd03466 352 -----KCVILDGADFFDIESYAKE-------LKIDVLIGNS------YGRRIAEKLGIPLIRI 396 (429)
T ss_pred -----ceEEEeCCCHHHHHHHHHh-------cCCCEEEECc------hhHHHHHHcCCCEEEe
No 423
>PF07085 DRTGG: DRTGG domain; InterPro: IPR010766 This presumed domain is about 120 amino acids in length. It is found associated with CBS domains IPR000644 from INTERPRO, as well as the CbiA domain IPR002586 from INTERPRO. The function of this domain is unknown. It is named the DRTGG domain after some of the most conserved residues. This domain may be very distantly related to a pair of CBS domains. There are no significant sequence similarities, but its length and association with CBS domains supports this idea. ; PDB: 3L31_B 3L2B_A 2IOJ_A.
Probab=22.04 E-value=89 Score=24.92 Aligned_cols=31 Identities=26% Similarity=0.454 Sum_probs=18.1
Q ss_pred EEEEEeCCCCCCCchHHHHHHHcCCCEEEEc
Q 020794 158 ITCVISNHDRGPNSHVIRFLERHGIPYHYLC 188 (321)
Q Consensus 158 i~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~ 188 (321)
+.+++-.....+...+++.|+++|||+...+
T Consensus 62 i~~iIltg~~~~~~~v~~la~~~~i~vi~t~ 92 (105)
T PF07085_consen 62 IACIILTGGLEPSEEVLELAKELGIPVISTP 92 (105)
T ss_dssp ECEEEEETT----HHHHHHHHHHT-EEEE-S
T ss_pred CCEEEEeCCCCCCHHHHHHHHHCCCEEEEEC
Confidence 5554443333456788999999999998765
No 424
>PF01206 TusA: Sulfurtransferase TusA; InterPro: IPR001455 SirA functions as a response regulator as part of a two-component system, where BarA is the sensor kinase. This system increases the expression of virulence genes and decreases the expression of motility genes []. BarA phosphorylates SirA, thereby activating the protein. Phosphorylated SirA directly activates virulence expression by interacting with hilA and hilC promoters, while repressing the flagellar regulon indirectly by binding to the csrB promoter, which in turn affects flagellar gene expression. Orthologues of SirA from Salmonella spp. can be found throughout proteobacteria, such as GacA in Psuedomonas spp., VarA in Vibrio cholerae, ExpA in Erwinia carotovora, LetA in Legionella pneumophila, and UvrY in Escherichia coli []. A sensor kinase for SirA is present in each of these organisms as well; the sensor kinase is known as BarA in E. coli and Salmonella spp., but has different names in other genera. In different species, SirA/BarA orthologues are required for virulence gene expression, exoenzyme and antibiotic production, motility, and biofilm formation. The structure of SirA consists of an alpha/beta sandwich with a beta-alpha-beta-alpha-beta(2) fold, comprising a mixed four-stranded beta-sheet stacked against two alpha-helices, both of which are nearly parallel to the strands of the beta-sheet []. Several uncharacterised bacterial proteins (73 to 81 amino-acid residues in length) that contain a well-conserved region in their N-terminal region show structural similarity to the SirA protein, including the E. coli protein YedF (P0AA31 from SWISSPROT), and other members of the UPF0033 family.; GO: 0016783 sulfurtransferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3LVJ_D 3LVK_B 1DCJ_A 3HZ7_A 1JDQ_A 1JE3_A 1PAV_A.
Probab=21.99 E-value=1.9e+02 Score=21.13 Aligned_cols=40 Identities=8% Similarity=0.077 Sum_probs=30.0
Q ss_pred EEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEE
Q 020794 44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRS 88 (321)
Q Consensus 44 Iltv~G~Dr~GIVA~VS~~La~~G~NI~d~~q~~~~l~g~F~Mr~ 88 (321)
++.|.. |.++-+..|..++.++|..+++..+. +|.|.+.+
T Consensus 29 ~l~v~~-d~~~~~~di~~~~~~~g~~~~~~~~~----~~~~~i~I 68 (70)
T PF01206_consen 29 VLEVLV-DDPAAVEDIPRWCEENGYEVVEVEEE----GGEYRILI 68 (70)
T ss_dssp EEEEEE-SSTTHHHHHHHHHHHHTEEEEEEEES----SSSEEEEE
T ss_pred EEEEEE-CCccHHHHHHHHHHHCCCEEEEEEEe----CCEEEEEE
Confidence 344443 55667789999999999999999883 57776554
No 425
>COG1671 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.84 E-value=5.8e+02 Score=22.76 Aligned_cols=84 Identities=10% Similarity=0.098 Sum_probs=53.2
Q ss_pred EEEEEEeCCCCCChHHHHHHHHHHHHHhhhccceee---eC-CCCCCeeEEEEEeCCchhHHHHHHhhhcCCcCeeEEEE
Q 020794 86 SRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVR---VP-DIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCV 161 (321)
Q Consensus 86 Mr~~v~~~~~~~~~~~L~~~L~~la~~lg~~~~~~r---~~-~~~~~~rIavl~S~~g~~l~~lL~~~~~~~l~~~i~~V 161 (321)
|.+-+|.+..+ +.+.+..+++++|++.+-.. +. ..++.-|..+..+|....=..|++.++.|. .|
T Consensus 2 ~~I~VDADACP-----Vk~~i~r~A~r~~~~v~~Van~~~~~~~~~~i~~v~V~~g~DaaD~~Iv~~a~~gD------lV 70 (150)
T COG1671 2 MTIWVDADACP-----VKDEIYRVAERMGLKVTFVANFPHRVPPSPEIRTVVVDAGFDAADDWIVNLAEKGD------LV 70 (150)
T ss_pred ceEEEeCCCCc-----hHHHHHHHHHHhCCeEEEEeCCCccCCCCCceeEEEecCCcchHHHHHHHhCCCCC------EE
Confidence 56667776543 67889999999997654221 11 133445555555554443334777777774 25
Q ss_pred EeCCCCCCCchHHHHHHHcCCCEE
Q 020794 162 ISNHDRGPNSHVIRFLERHGIPYH 185 (321)
Q Consensus 162 is~~~~~~~~~v~~~a~~~gIP~~ 185 (321)
||. +.++...+...|.-+.
T Consensus 71 VT~-----Di~LA~~ll~kg~~v~ 89 (150)
T COG1671 71 VTA-----DIPLASLLLDKGAAVL 89 (150)
T ss_pred EEC-----chHHHHHHHhcCCEEE
Confidence 664 4688999999998765
No 426
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=21.84 E-value=7.6e+02 Score=28.23 Aligned_cols=30 Identities=23% Similarity=0.214 Sum_probs=20.5
Q ss_pred eEEEEEeCCCCC----CCchHHHHHHHcCCCEEE
Q 020794 157 EITCVISNHDRG----PNSHVIRFLERHGIPYHY 186 (321)
Q Consensus 157 ~i~~Vis~~~~~----~~~~v~~~a~~~gIP~~~ 186 (321)
+|..||..+... .+..+++.|.++|||+..
T Consensus 1004 ~idlvIn~~~~~~~~~~g~~iRr~Av~~~ip~~T 1037 (1066)
T PRK05294 1004 EIDLVINTPTGRQAIRDGFSIRRAALEYKVPYIT 1037 (1066)
T ss_pred CeEEEEECCCCcccccccHHHHHHHHHcCCCEEe
Confidence 566666654321 134678889999999985
No 427
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=21.84 E-value=4.6e+02 Score=26.52 Aligned_cols=71 Identities=10% Similarity=-0.017 Sum_probs=40.6
Q ss_pred CchhHHHHHHhhhcCCcCeeEEEEEeCCCCCCCchHHHHHHHcCCCEEEEcCCcc---hhHHHHHHHhcCCCEEEEEeec
Q 020794 138 QEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKEN---EREEELLELVQNTDFLVLARYM 214 (321)
Q Consensus 138 ~g~~l~~lL~~~~~~~l~~~i~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~~~~~---~~~~~~~~~l~~~Dlivlag~~ 214 (321)
.+.....++....+. .+.+++=+.+. +..=.+.|+..|+++...+.-.. +.-++..++++++|.+|++++.
T Consensus 275 ~~~~~~~~~~~L~~~--g~~v~~g~l~~----~d~d~~~a~~l~~~~~~~~pf~~i~~~~~~~a~~~~~~~~~vi~~~~~ 348 (402)
T PRK09536 275 GGQPAARAVSRLVAA--GASVSVGPVPE----GDTAAETAARVGCEAVTVPPFKPIEDSTRAEATDLIIAADAVVAAGVA 348 (402)
T ss_pred CCCcHHHHHHHHHHC--CCeEEEecCcC----cchhHHHHHHcCCCEEeeCCCCCCCHHHHHHHHHHHHhCCEEEECCCc
Confidence 333334444443333 25665544443 22347889999999986553111 1223455556689999998774
No 428
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=21.76 E-value=1e+02 Score=31.39 Aligned_cols=75 Identities=19% Similarity=0.282 Sum_probs=41.3
Q ss_pred eeEEEEEeCCchh---HHHHHHhhhcCCcC-eeEEEEEeCCCCCC--CchHHHHHHHcCCCEEEEcCCcchhHHHHHHHh
Q 020794 129 YKVAVLASKQEHC---LVDFLYGWQEGKLP-VEITCVISNHDRGP--NSHVIRFLERHGIPYHYLCAKENEREEELLELV 202 (321)
Q Consensus 129 ~rIavl~S~~g~~---l~~lL~~~~~~~l~-~~i~~Vis~~~~~~--~~~v~~~a~~~gIP~~~~~~~~~~~~~~~~~~l 202 (321)
+||+|+|.|+.-. +++|+... ..|+ .+|+++=.+..+-. ..-+.++++++|.++.+.... +..+.+
T Consensus 1 ~KI~iIGgGS~~tp~li~~l~~~~--~~l~~~ei~L~Did~~Rl~~v~~l~~~~~~~~g~~~~v~~tt------D~~~Al 72 (425)
T cd05197 1 VKIAIIGGGSSFTPELVSGLLKTP--EELPISEVTLYDIDEERLDIILTIAKRYVEEVGADIKFEKTM------DLEDAI 72 (425)
T ss_pred CEEEEECCchHhHHHHHHHHHcCh--hhCCCCEEEEEcCCHHHHHHHHHHHHHHHHhhCCCeEEEEeC------CHHHHh
Confidence 5999999887522 44454431 1355 56665533332211 123455667788876653321 234455
Q ss_pred cCCCEEEEE
Q 020794 203 QNTDFLVLA 211 (321)
Q Consensus 203 ~~~Dlivla 211 (321)
+++|+|+..
T Consensus 73 ~gADfVi~~ 81 (425)
T cd05197 73 IDADFVINQ 81 (425)
T ss_pred CCCCEEEEe
Confidence 689998764
No 429
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=21.71 E-value=1.3e+02 Score=33.17 Aligned_cols=138 Identities=20% Similarity=0.203 Sum_probs=72.8
Q ss_pred HHhcCCeEeEeeeeccC--CCCeEEEEEEEEeCCCCCChHHHHHHHHHHHHHhhhccceeeeCCCCCCeeE----EEEEe
Q 020794 63 IASRGGNILAADVFVPE--KKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKV----AVLAS 136 (321)
Q Consensus 63 La~~G~NI~d~~q~~~~--l~g~F~Mr~~v~~~~~~~~~~~L~~~L~~la~~lg~~~~~~r~~~~~~~~rI----avl~S 136 (321)
=++.|+.|..-+++... .+..| ++.-.+.+..-+... +=+++.+-|++.. ..+|+..|..|+ .|+.+
T Consensus 314 EaKE~v~i~~e~~t~a~It~qn~F--r~Y~kl~GmTGTa~t---e~~E~~~iY~l~v--v~IPtnkp~~R~d~~d~i~~t 386 (745)
T TIGR00963 314 EAKEGVEIQNENQTLATITYQNFF--RLYEKLSGMTGTAKT---EEEEFEKIYNLEV--VVVPTNRPVIRKDLSDLVYKT 386 (745)
T ss_pred HHhcCCCcCCCceeeeeeeHHHHH--hhCchhhccCCCcHH---HHHHHHHHhCCCE--EEeCCCCCeeeeeCCCeEEcC
Confidence 36788988887776432 22333 333333333223332 2244556677653 446655554443 45554
Q ss_pred CCchhHHHHHHhhhcCCcCeeEEEEEeCCCCCCCchHHHHHHHcCCCEEEEcCCcchhHHHHHHHhc-CCCEEE
Q 020794 137 KQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ-NTDFLV 209 (321)
Q Consensus 137 ~~g~~l~~lL~~~~~~~l~~~i~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~~~~~l~-~~Dliv 209 (321)
... -..++++.+.+-.-..+.+.|+|+.-.. .-.+.+...+.|||...+..+...+++++.+.-. ...+.|
T Consensus 387 ~~~-k~~ai~~~i~~~~~~grpvLV~t~si~~-se~ls~~L~~~gi~~~~Lna~q~~rEa~ii~~ag~~g~VtI 458 (745)
T TIGR00963 387 EEE-KWKAVVDEIKERHAKGQPVLVGTTSVEK-SELLSNLLKERGIPHNVLNAKNHEREAEIIAQAGRKGAVTI 458 (745)
T ss_pred HHH-HHHHHHHHHHHHHhcCCCEEEEeCcHHH-HHHHHHHHHHcCCCeEEeeCChHHHHHHHHHhcCCCceEEE
Confidence 432 2344444332111124678888886321 1245677788999998887554456666665432 344443
No 430
>PRK09977 putative Mg(2+) transport ATPase; Provisional
Probab=21.67 E-value=5.6e+02 Score=23.87 Aligned_cols=60 Identities=5% Similarity=-0.119 Sum_probs=39.0
Q ss_pred EEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHH
Q 020794 43 GIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFF 107 (321)
Q Consensus 43 ~Iltv~G~Dr~GIVA~VS~~La~~G~NI~d~~q~~~~l~g~F~Mr~~v~~~~~~~~~~~L~~~L~ 107 (321)
+.+++.|.+.. +..+.+.+.+++..+.+++..... +...+.+++.++. ..+..++-++|.
T Consensus 145 ~~~~i~~~~~~--~~~i~~~l~~~~i~i~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~l~~~L~ 204 (215)
T PRK09977 145 YHLQLTLVNGN--VVSMLDWFKQQKIKTDLVSLQENE--DHEVVAIDITLHA-TTSIEDLYRLLK 204 (215)
T ss_pred EEEEEEEcccc--HHHHHHHHHHcCceEEEEEEEecC--CCcEEEEEEEECC-CCCHHHHHHHHh
Confidence 55666676443 578889999999999999876432 2234667777764 345555544443
No 431
>COG0303 MoeA Molybdopterin biosynthesis enzyme [Coenzyme metabolism]
Probab=21.66 E-value=1.8e+02 Score=29.71 Aligned_cols=73 Identities=25% Similarity=0.256 Sum_probs=42.3
Q ss_pred CCeeEEEEEeCCchhHHHHHHhhhcCCc-CeeEEEEEeCCCCCCCchHHHHHHHcCCCEEEEcC-CcchhHHHHHHHhc-
Q 020794 127 PKYKVAVLASKQEHCLVDFLYGWQEGKL-PVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCA-KENEREEELLELVQ- 203 (321)
Q Consensus 127 ~~~rIavl~S~~g~~l~~lL~~~~~~~l-~~~i~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~~-~~~~~~~~~~~~l~- 203 (321)
+|.||+||.+|..- +.-. ..+ +.+|.. +| ...+..+++++|........ ++ ..+++.+.++
T Consensus 175 rkprV~IisTGdEL-----v~~~--~~l~~gqI~d--sN-----~~~l~a~l~~~G~e~~~~giv~D--d~~~l~~~i~~ 238 (404)
T COG0303 175 RKPRVAIISTGDEL-----VEPG--QPLEPGQIYD--SN-----SYMLAALLERAGGEVVDLGIVPD--DPEALREAIEK 238 (404)
T ss_pred cCCEEEEEecCccc-----cCCC--CCCCCCeEEe--cC-----HHHHHHHHHHcCCceeeccccCC--CHHHHHHHHHH
Confidence 57899999998752 2211 111 344442 11 23577888999986555442 22 2334444443
Q ss_pred ---CCCEEEEEeecc
Q 020794 204 ---NTDFLVLARYMQ 215 (321)
Q Consensus 204 ---~~Dlivlag~~~ 215 (321)
++|++|+.|-.-
T Consensus 239 a~~~~DviItsGG~S 253 (404)
T COG0303 239 ALSEADVIITSGGVS 253 (404)
T ss_pred hhhcCCEEEEeCCcc
Confidence 699999887653
No 432
>cd01545 PBP1_SalR Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. The SalR binds to glucose based compound Salicin which is chemically related to aspirin. The ligand-binding of SalR is structurally homologous to the periplasmic sugar-binding domain of ABC-transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand bind
Probab=21.58 E-value=5.5e+02 Score=22.58 Aligned_cols=74 Identities=11% Similarity=0.139 Sum_probs=39.7
Q ss_pred ChHHHHHHHHHHHHHhhhccceeeeCCCCCCeeEEEEEeCCch--hHHHHHHhhhcCCcCeeEEEEEeCCCCCCCchHHH
Q 020794 98 PREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEH--CLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIR 175 (321)
Q Consensus 98 ~~~~L~~~L~~la~~lg~~~~~~r~~~~~~~~rIavl~S~~g~--~l~~lL~~~~~~~l~~~i~~Vis~~~~~~~~~v~~ 175 (321)
-..++.+.++..+++.|. .+.++.+.... ....+++..... .+.+++............+
T Consensus 13 ~~~~~~~gi~~~~~~~g~--------------~~~~~~~~~~~~~~~~~~~~~l~~~----~vdgiii~~~~~~~~~~~~ 74 (270)
T cd01545 13 YVSEIQLGALDACRDTGY--------------QLVIEPCDSGSPDLAERVRALLQRS----RVDGVILTPPLSDNPELLD 74 (270)
T ss_pred cHHHHHHHHHHHHHhCCC--------------eEEEEeCCCCchHHHHHHHHHHHHC----CCCEEEEeCCCCCccHHHH
Confidence 367777888877776542 34444444322 233444443333 2333333221111235567
Q ss_pred HHHHcCCCEEEEcC
Q 020794 176 FLERHGIPYHYLCA 189 (321)
Q Consensus 176 ~a~~~gIP~~~~~~ 189 (321)
.+.+.|||+..++.
T Consensus 75 ~~~~~~ipvv~i~~ 88 (270)
T cd01545 75 LLDEAGVPYVRIAP 88 (270)
T ss_pred HHHhcCCCEEEEec
Confidence 88899999988763
No 433
>PRK10799 metal-binding protein; Provisional
Probab=21.51 E-value=6.6e+02 Score=23.36 Aligned_cols=134 Identities=12% Similarity=0.066 Sum_probs=67.2
Q ss_pred cchHHHHHHHHHhcCCeEeEeeeeccCCC--CeEE----------------EEEEEEeCCCCCChHHHHHHHHHHHHHhh
Q 020794 53 VGIVAKLSECIASRGGNILAADVFVPEKK--NVFY----------------SRSEFIFDPIKWPREQMDEDFFKLSKMFN 114 (321)
Q Consensus 53 ~GIVA~VS~~La~~G~NI~d~~q~~~~l~--g~F~----------------Mr~~v~~~~~~~~~~~L~~~L~~la~~lg 114 (321)
+|...+.-..|.++|+++.......|... |... +-....++. +.+.++|.+.++ +.++
T Consensus 76 ~~~~~~~~~~li~~~i~vy~~Htn~D~~~~~G~n~~la~~Lgl~~~~~~~~~~~~g~l~~-~~s~~~l~~~vk---~~l~ 151 (247)
T PRK10799 76 RGMKRNRLKTLLANDINLYGWHLPLDAHPELGNNAQLAALLGITVMGEIEPLVPWGELTM-PVPGLELASWIE---ARLG 151 (247)
T ss_pred cchHHHHHHHHHHCCCeEEEEecchhhCCCCCHHHHHHHHcCCCcccCcCCceeeEECCC-CcCHHHHHHHHH---HHhC
Confidence 35555666778888888887666544221 2211 000012221 234555555544 4555
Q ss_pred hccceeeeCCC--CCCeeEEEEEeCCchhHHHHHHhhhcCCcCeeEEEEEeCCCCCCCchHHHHHHHcCCCEEEEcCCcc
Q 020794 115 AMRSVVRVPDI--DPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKEN 192 (321)
Q Consensus 115 ~~~~~~r~~~~--~~~~rIavl~S~~g~~l~~lL~~~~~~~l~~~i~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~~~~~ 192 (321)
.. . ....+. .+.+||||+ +|.|..+.. .+.+.| ++ +.||..- .......|.++|+.+..+.+...
T Consensus 152 ~~-~-~~~~~~~~~~i~rVAi~-~GsG~~~i~--~a~~~g---aD--~~ITGd~---k~h~~~~A~~~gl~li~~GH~~s 218 (247)
T PRK10799 152 RK-P-LWCGDTGPEVVQRVAWC-TGGGQSFID--SAARFG---VD--AFITGEV---SEQTIHSAREQGLHFYAAGHHAT 218 (247)
T ss_pred CC-e-EEECCCCCCcccEEEEE-CCchHHHHH--HHHHcC---CC--EEEECCc---chHHHHHHHHCCCeEEEcCchHH
Confidence 43 1 222222 345889997 455543211 111223 33 2455432 22446778999999988877433
Q ss_pred hhH--HHHHHHhc
Q 020794 193 ERE--EELLELVQ 203 (321)
Q Consensus 193 ~~~--~~~~~~l~ 203 (321)
++- +.+.++|+
T Consensus 219 E~~~~~~la~~L~ 231 (247)
T PRK10799 219 ERGGIRALSEWLN 231 (247)
T ss_pred HHHHHHHHHHHHH
Confidence 221 34555554
No 434
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=21.17 E-value=6.9e+02 Score=24.74 Aligned_cols=23 Identities=22% Similarity=0.212 Sum_probs=14.4
Q ss_pred CCCEEEEEeeccccchhhHhhhhh
Q 020794 204 NTDFLVLARYMQPVPLQKEAYLGY 227 (321)
Q Consensus 204 ~~Dlivlag~~~~~~~~~~~~~~~ 227 (321)
.+|++|+-+-...+| ++|.+.++
T Consensus 131 ~~~lVVvDSv~al~p-~~E~e~~~ 153 (322)
T PF00154_consen 131 AVDLVVVDSVAALVP-KAELEGEI 153 (322)
T ss_dssp SESEEEEE-CTT-B--HHHHTTST
T ss_pred cccEEEEecCcccCC-HHHHhhcc
Confidence 578999888888777 45666554
No 435
>PRK10887 glmM phosphoglucosamine mutase; Provisional
Probab=21.13 E-value=8.1e+02 Score=24.68 Aligned_cols=123 Identities=13% Similarity=0.101 Sum_probs=62.4
Q ss_pred EEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHHHHHhhhccceeeeC
Q 020794 44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRVP 123 (321)
Q Consensus 44 Iltv~G~Dr~GIVA~VS~~La~~G~NI~d~~q~~~~l~g~F~Mr~~v~~~~~~~~~~~L~~~L~~la~~lg~~~~~~r~~ 123 (321)
-|.+.|..-.|- .-+...|.+.||+++.++... +|.|. .-+......++|++...+....+|+. .
T Consensus 173 kVvvD~~~G~~~-~~~~~ll~~lG~~v~~~n~~~---dg~~~-----~~~~~~~~l~~l~~~v~~~~adlGia------~ 237 (443)
T PRK10887 173 KIVVDCANGATY-HIAPNVFRELGAEVIAIGCEP---NGLNI-----NDECGATDPEALQAAVLAEKADLGIA------F 237 (443)
T ss_pred EEEEECCCchHH-HHHHHHHHHhCCeEEEEeccC---CCCCC-----CCCCCCCCHHHHHHHHHhcCCCeeeE------E
Confidence 344444433332 122457888899999887753 45552 00111134556666665555555542 2
Q ss_pred CCCCCeeEEEEEeCCchh-----HHHHHHh--hhcCCcCeeEEEEEeCCCCCCCchHHHHHHHcCCCEEEEc
Q 020794 124 DIDPKYKVAVLASKQEHC-----LVDFLYG--WQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC 188 (321)
Q Consensus 124 ~~~~~~rIavl~S~~g~~-----l~~lL~~--~~~~~l~~~i~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~ 188 (321)
+.|- -|++++ ...|.. +.+|+.. ++++.++..|+.=++. ...+.+.|+++|+++...+
T Consensus 238 D~Dg-DRl~~v-d~~G~~i~~d~l~~l~~~~ll~~~~~~~~vv~~v~s-----s~~~~~~a~~~g~~v~~t~ 302 (443)
T PRK10887 238 DGDG-DRVIMV-DHLGNLVDGDQLLYIIARDRLRRGQLRGGVVGTLMS-----NMGLELALKQLGIPFVRAK 302 (443)
T ss_pred CCCC-ceEEEE-CCCCcEeCHHHHHHHHHHHHHHhCCCCCcEEEEecc-----chHHHHHHHHcCCcEEEcC
Confidence 3333 366544 555532 2222221 2232222333332222 2357789999999998765
No 436
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=21.11 E-value=2.6e+02 Score=27.10 Aligned_cols=77 Identities=14% Similarity=0.116 Sum_probs=47.4
Q ss_pred eeEEEEEeCCchhHHHHHHhhhcCCcCeeEEEEEeCCCCCCCchHHHHHHHc-CCCEEEEc-CCcchhHHHHHHHhc---
Q 020794 129 YKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERH-GIPYHYLC-AKENEREEELLELVQ--- 203 (321)
Q Consensus 129 ~rIavl~S~~g~~l~~lL~~~~~~~l~~~i~~Vis~~~~~~~~~v~~~a~~~-gIP~~~~~-~~~~~~~~~~~~~l~--- 203 (321)
+||.|+|-|.|..++.+++.- . ..+++.|=-+ ..+.++|+++ .++..-.. .+-+...++-.+.++
T Consensus 78 k~VLiiGgGdG~tlRevlkh~---~-ve~i~~VEID------~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~ 147 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHL---P-VERITMVEID------PAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCE 147 (282)
T ss_pred CeEEEECCCccHHHHHHHhcC---C-cceEEEEEcC------HHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCC
Confidence 699999999999999988751 1 2455544333 3689999886 33332111 111222344555554
Q ss_pred -CCCEEEEEeecc
Q 020794 204 -NTDFLVLARYMQ 215 (321)
Q Consensus 204 -~~Dlivlag~~~ 215 (321)
+.|+|++-.+-.
T Consensus 148 ~~fDvIi~D~tdp 160 (282)
T COG0421 148 EKFDVIIVDSTDP 160 (282)
T ss_pred CcCCEEEEcCCCC
Confidence 589998876653
No 437
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=20.98 E-value=2.8e+02 Score=28.02 Aligned_cols=52 Identities=17% Similarity=0.284 Sum_probs=33.8
Q ss_pred CCCeeEEEEEeCCchhHHHHHHhhhc-CCcCeeEEEEEeCCCCCCCchHHHHHHHcCCC
Q 020794 126 DPKYKVAVLASKQEHCLVDFLYGWQE-GKLPVEITCVISNHDRGPNSHVIRFLERHGIP 183 (321)
Q Consensus 126 ~~~~rIavl~S~~g~~l~~lL~~~~~-~~l~~~i~~Vis~~~~~~~~~v~~~a~~~gIP 183 (321)
.+..|++|++.+.-. .+++..... .+..++|++|.+.. .....++|++|++|
T Consensus 4 s~~ir~Gi~g~g~ia--~~f~~al~~~p~s~~~Ivava~~s----~~~A~~fAq~~~~~ 56 (351)
T KOG2741|consen 4 SATIRWGIVGAGRIA--RDFVRALHTLPESNHQIVAVADPS----LERAKEFAQRHNIP 56 (351)
T ss_pred CceeEEEEeehhHHH--HHHHHHhccCcccCcEEEEEeccc----HHHHHHHHHhcCCC
Confidence 467899999877632 222222111 11258999997653 45679999999996
No 438
>cd01713 PAPS_reductase This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases. A highly modified version of the P loop, the fingerprint peptide of mononucleotide-binding proteins, is present in the active site of the protein, which appears to be a positively charged cleft containing a number of conserved arginine and lysine residues. Although PAPS reductase has no ATPase activity, it shows a striking similarity to the structure of the ATP pyrophosphatase (ATP PPase) domain of GMP synthetase, indicating that both enzyme families have evolved from a common ancestral nucleotide-binding fold. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) . It is also found in NodP nodulation protein P from Rhizobium meliloti which has ATP sulphurylase acti
Probab=20.88 E-value=3.3e+02 Score=22.27 Aligned_cols=58 Identities=19% Similarity=0.163 Sum_probs=33.4
Q ss_pred eEEEEEeCCc--hhHHHHHHhhhcCCcCeeEEEEEeCCCCCC---CchHHHHHHHcCCCEEEEcC
Q 020794 130 KVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGP---NSHVIRFLERHGIPYHYLCA 189 (321)
Q Consensus 130 rIavl~S~~g--~~l~~lL~~~~~~~l~~~i~~Vis~~~~~~---~~~v~~~a~~~gIP~~~~~~ 189 (321)
||+|..||.- +.+..++...... . .++.+|..+..-.. ...+.++|++.|+|+..+..
T Consensus 1 ~i~v~~SGGkDS~~ll~l~~~~~~~-~-~~~~~v~~dtg~~~~~~~~~~~~~~~~~g~~~~~~~~ 63 (173)
T cd01713 1 NVVVSFSGGKDSTVLLHLALKALPE-L-KPVPVIFLDTGYEFPETYEFVDRVAERYGLPLVVVRP 63 (173)
T ss_pred CeEEEecCChHHHHHHHHHHHhccc-c-cCceEEEeCCCCCCHHHHHHHHHHHHHhCCCeEEECC
Confidence 4677778764 3344444432211 0 25666666653211 13577888999999987763
No 439
>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]
Probab=20.83 E-value=7.2e+02 Score=23.80 Aligned_cols=120 Identities=17% Similarity=0.136 Sum_probs=67.5
Q ss_pred CCCEEEEcCCcchhHHHHHHHhc----CCCEE-EEEeeccccchhhHhhhhhh-hhhhhcccCcccccccccCChhHHhh
Q 020794 181 GIPYHYLCAKENEREEELLELVQ----NTDFL-VLARYMQPVPLQKEAYLGYK-LLESLSSKGSLTSYFNMILSGKFLRS 254 (321)
Q Consensus 181 gIP~~~~~~~~~~~~~~~~~~l~----~~Dli-vlag~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~il~~~~l~~ 254 (321)
+|-..+++-.+...-+++.+++. +.+.+ =.||-|+.+++. -++.-.+ +.+-+.-+....++-...+-+.+++.
T Consensus 51 ~~~t~v~Dv~d~~~~~~lvewLkk~~P~lNvliNNAGIqr~~dlt-~~e~~~~~~~~eI~~Nl~API~Lt~~~lphl~~q 129 (245)
T COG3967 51 EIHTEVCDVADRDSRRELVEWLKKEYPNLNVLINNAGIQRNEDLT-GAEDLLDDAEQEIATNLLAPIRLTALLLPHLLRQ 129 (245)
T ss_pred chheeeecccchhhHHHHHHHHHhhCCchheeeecccccchhhcc-CCcchhhHHHHHHHHhhhhHHHHHHHHHHHHHhC
Confidence 35555666333223357888775 34543 457788765544 1111111 11222222333333333555677777
Q ss_pred cCCCeEEecCCC-------CCCCCCC----hHHHHHHHhCCCeeEEEEEEecC-CCCCC
Q 020794 255 YGKDVINIHHGL-------LPSFKGG----KPAKQAFDAGVKLIGATSHFVTE-ELDAG 301 (321)
Q Consensus 255 ~~~~~INiHpsl-------LP~yrG~----~pi~~Ai~~G~~~~G~TvH~v~~-~~D~G 301 (321)
+..-+||+-.|| -|-|-+. +.+--|+....+.+++-|..+-. -+|++
T Consensus 130 ~~a~IInVSSGLafvPm~~~PvYcaTKAaiHsyt~aLR~Qlk~t~veVIE~~PP~V~t~ 188 (245)
T COG3967 130 PEATIINVSSGLAFVPMASTPVYCATKAAIHSYTLALREQLKDTSVEVIELAPPLVDTT 188 (245)
T ss_pred CCceEEEeccccccCcccccccchhhHHHHHHHHHHHHHHhhhcceEEEEecCCceecC
Confidence 777899998876 3556553 23445677777889999988864 56765
No 440
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=20.78 E-value=8.7e+02 Score=24.46 Aligned_cols=184 Identities=11% Similarity=0.016 Sum_probs=92.2
Q ss_pred CCccchHHHHHHHHHhcCCeEeE-eee--ec----cCCCCeEEEEE-------------------EEEeCCCCCChHHHH
Q 020794 50 PDEVGIVAKLSECIASRGGNILA-ADV--FV----PEKKNVFYSRS-------------------EFIFDPIKWPREQMD 103 (321)
Q Consensus 50 ~Dr~GIVA~VS~~La~~G~NI~d-~~q--~~----~~l~g~F~Mr~-------------------~v~~~~~~~~~~~L~ 103 (321)
..-+|=+..+...|.+.|+++.- ... +. ...+-.+...+ .+..+ ....++..
T Consensus 181 ~~~~~d~~el~~lL~~~Gi~v~~~~~~~~t~eei~~~~~A~lniv~~~~~~~~~a~~Le~~fGiP~~~~~--p~Gi~~t~ 258 (421)
T cd01976 181 YNIGGDAWASRILLEEMGLRVVAQWSGDGTLNEMENAHKAKLNLIHCYRSMNYIARMMEEKYGIPWMEYN--FFGPTKIA 258 (421)
T ss_pred CCCCccHHHHHHHHHHcCCeEEEEeCCCCCHHHHHhcccCCEEEEECcHHHHHHHHHHHHHhCCcEEecc--cCCHHHHH
Confidence 44567778889999999999973 211 10 00011122211 01111 35678888
Q ss_pred HHHHHHHHHhhhccc-e----ee------------eCCCCCCeeEEEEEeCCc-hhHHHHHHhhhcCCcCeeEEEEEeCC
Q 020794 104 EDFFKLSKMFNAMRS-V----VR------------VPDIDPKYKVAVLASKQE-HCLVDFLYGWQEGKLPVEITCVISNH 165 (321)
Q Consensus 104 ~~L~~la~~lg~~~~-~----~r------------~~~~~~~~rIavl~S~~g-~~l~~lL~~~~~~~l~~~i~~Vis~~ 165 (321)
+-|+++++.+|.+.. . +. ....-..+|+++++.+.. ..+..++. +|..+|+.+-+..
T Consensus 259 ~~l~~ia~~~g~~~~~~~e~~i~~e~~~~~~~l~~~~~~L~Gkrv~i~~g~~~~~~~~~~l~-----elGmevv~~g~~~ 333 (421)
T cd01976 259 ESLRKIAAYFDDEITAKTEEVIAEYKPAMEAVIAKYRPRLEGKTVMLYVGGLRPRHYIGAYE-----DLGMEVVGTGYEF 333 (421)
T ss_pred HHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHH-----HCCCEEEEEEeec
Confidence 888888877764210 0 00 001123478888764332 22223332 3567888654421
Q ss_pred CCCCCchHHHHHHHcC-CCEEEEcCCcchhHHHHHHHhc--CCCEEEEEeeccccchhhHhhhhhhhhhhhcccCccccc
Q 020794 166 DRGPNSHVIRFLERHG-IPYHYLCAKENEREEELLELVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSY 242 (321)
Q Consensus 166 ~~~~~~~v~~~a~~~g-IP~~~~~~~~~~~~~~~~~~l~--~~Dlivlag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (321)
.. +....+..+..+ -++. +.. .+..++.++++ +||+++-..+.+
T Consensus 334 ~~--~~~~~~~~~~~~~~~~i-~~~---~d~~e~~~~i~~~~pDliig~~~~~--------------------------- 380 (421)
T cd01976 334 AH--RDDYERTEVIPKEGTLL-YDD---VTHYELEEFVKRLKPDLIGSGIKEK--------------------------- 380 (421)
T ss_pred CC--HHHHhhHHhhcCCceEE-EcC---CCHHHHHHHHHHhCCCEEEecCcch---------------------------
Confidence 10 111111111211 1222 221 23456667765 899998654443
Q ss_pred ccccCChhHHhhcCCCeEEecCCCC--C--CCCCChHHHHHH
Q 020794 243 FNMILSGKFLRSYGKDVINIHHGLL--P--SFKGGKPAKQAF 280 (321)
Q Consensus 243 ~~~il~~~~l~~~~~~~INiHpslL--P--~yrG~~pi~~Ai 280 (321)
.+-++...+++.+|..-+ | -|+|+.-+-..|
T Consensus 381 -------~~a~k~giP~~~~~~~~~~~~~~Gy~G~~~~~~~i 415 (421)
T cd01976 381 -------YVFQKMGIPFRQMHSWDYSGPYHGFDGFAIFARDM 415 (421)
T ss_pred -------hhhhhcCCCeEeCCccccCCCccchhhHHHHHHHH
Confidence 223455666788886655 5 688865554444
No 441
>PRK05583 ribosomal protein L7Ae family protein; Provisional
Probab=20.75 E-value=4.2e+02 Score=21.66 Aligned_cols=65 Identities=18% Similarity=0.291 Sum_probs=37.0
Q ss_pred EEeCCchhHHHHHHhhhcCCcCeeEEEEEeCCCCCC--CchHHHHHHHcCCCEEEEcCCcchhHHHHHHHhcCCCEEEEE
Q 020794 134 LASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGP--NSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDFLVLA 211 (321)
Q Consensus 134 l~S~~g~~l~~lL~~~~~~~l~~~i~~Vis~~~~~~--~~~v~~~a~~~gIP~~~~~~~~~~~~~~~~~~l~~~Dlivla 211 (321)
++||...++++ ++.|+ +.+||...|-.+ ...+.++|+.++||+..+.. .+|+-..+-+...++++
T Consensus 18 lv~G~~~v~~a----ik~gk----~~lVI~A~D~s~~~kkki~~~~~~~~vp~~~~~t-----~~eLg~a~Gk~~~~~ia 84 (104)
T PRK05583 18 LLEGYNKCEEA----IKKKK----VYLIIISNDISENSKNKFKNYCNKYNIPYIEGYS-----KEELGNAIGRDEIKILG 84 (104)
T ss_pred eeecHHHHHHH----HHcCC----ceEEEEeCCCCHhHHHHHHHHHHHcCCCEEEecC-----HHHHHHHhCCCCeEEEE
Confidence 66776665554 34453 344444443322 24678889999999986642 24565555444444443
No 442
>TIGR01284 alt_nitrog_alph nitrogenase alpha chain. This model represents the alpha chains of various forms of the nitrogen-fixing enzyme nitrogenase: vanadium-iron, iron-iron, and molybdenum-iron. Most examples of NifD, the molybdenum-iron type nitrogenase alpha chain, are excluded from this model and described instead by equivalog model TIGR01282. It appears by phylogenetic and UPGMA trees that this model represents a distinct clade of NifD homologs, in which arose several molybdenum-independent forms.
Probab=20.73 E-value=8.1e+02 Score=25.08 Aligned_cols=162 Identities=13% Similarity=0.042 Sum_probs=78.5
Q ss_pred cEEEEEEcCCc-cchHHHHHHHHHhcCCeEeEeeee---cc---C---------------------CCCeEEEEEEEEeC
Q 020794 42 HGIHVFHCPDE-VGIVAKLSECIASRGGNILAADVF---VP---E---------------------KKNVFYSRSEFIFD 93 (321)
Q Consensus 42 ~~Iltv~G~Dr-~GIVA~VS~~La~~G~NI~d~~q~---~~---~---------------------l~g~F~Mr~~v~~~ 93 (321)
+.-|.++|.-. +|-+..+-..|.+.|+++.-.-.- .+ . ++..|-+- .+..+
T Consensus 199 ~~~VNiiG~~~~~gd~~el~~lL~~~Gl~v~~~~~g~~s~~ei~~~~~A~lniv~~~~~~~~~A~~Le~~~GiP-~~~~~ 277 (457)
T TIGR01284 199 EYDVNLIGEYNIQGDLWVLKKYFERMGIQVLSTFTGNGCYDELRWMHRAKLNVVRCARSANYIANELEERYGIP-RLDID 277 (457)
T ss_pred CCeEEEEccCCchhhHHHHHHHHHHcCCeEEEEECCCCCHHHHHhccccCEEEEEChHHHHHHHHHHHHHhCCC-eEecc
Confidence 34455556433 577888889999999999732110 00 0 11111110 11111
Q ss_pred CCCCChHHHHHHHHHHHHHhhhccce-------ee--------eCCCCCCeeEEEEEeCCc-hhHHHHHHhhhcCCcCee
Q 020794 94 PIKWPREQMDEDFFKLSKMFNAMRSV-------VR--------VPDIDPKYKVAVLASKQE-HCLVDFLYGWQEGKLPVE 157 (321)
Q Consensus 94 ~~~~~~~~L~~~L~~la~~lg~~~~~-------~r--------~~~~~~~~rIavl~S~~g-~~l~~lL~~~~~~~l~~~ 157 (321)
....++-.+-|.++++-+|+.... .+ ....-..+|++|++.+.- ..+..+|. .++..+
T Consensus 278 --~~G~~~T~~~l~~ia~~~g~~~~~e~~i~~~~~~~~~~ld~~~~~L~GkrvaI~~~~~~~~~l~~~l~----~ElGme 351 (457)
T TIGR01284 278 --FFGFEYCAKNLRKIGEFFGIEERAERVIEEEMAKWKPELDWYKERLRGKKVWVWSGGPKLWHWPRPLE----DELGME 351 (457)
T ss_pred --cCCHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECCCcHHHHHHHHHH----HhCCCE
Confidence 256677777777777777654310 00 011123468988664421 12333332 235578
Q ss_pred EEEEEeCCCCCCCchHHHHHHHcCCCEEEEcCCcchhHHHHHHHhc--CCCEEEEEeecc
Q 020794 158 ITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ--NTDFLVLARYMQ 215 (321)
Q Consensus 158 i~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~~~~~l~--~~Dlivlag~~~ 215 (321)
++++.+.... .....+..++..--...++. ....++.+.++ +||+++-..+.+
T Consensus 352 vv~~~~~~~~--~~~~~~~~~~~~~~~~~i~d---~~~~e~~~~i~~~~pDllig~~~~~ 406 (457)
T TIGR01284 352 VVAVSTKFGH--EDDYEKIIARVREGTVIIDD---PNELELEEIIEKYKPDIILTGIREG 406 (457)
T ss_pred EEEEEEEeCC--HHHHHHHHHhcCCCeEEEeC---CCHHHHHHHHHhcCCCEEEecCCcc
Confidence 8877664311 11223333332211122221 23345666554 899987665554
No 443
>PRK06141 ornithine cyclodeaminase; Validated
Probab=20.55 E-value=2.8e+02 Score=26.73 Aligned_cols=72 Identities=10% Similarity=0.091 Sum_probs=37.7
Q ss_pred CCeeEEEEEeCCch--hHHHHHHhhhcCCcCeeEEEEEeCCCCCCCchHHHHHHH---cCCCEEEEcCCcchhHHHHHHH
Q 020794 127 PKYKVAVLASKQEH--CLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLER---HGIPYHYLCAKENEREEELLEL 201 (321)
Q Consensus 127 ~~~rIavl~S~~g~--~l~~lL~~~~~~~l~~~i~~Vis~~~~~~~~~v~~~a~~---~gIP~~~~~~~~~~~~~~~~~~ 201 (321)
..+||+|+|+|.-. .+++++.. .+ ..+|. +.|+. .....++|++ .|+++..+.. ..+.
T Consensus 124 ~~~~v~iiG~G~~a~~~~~al~~~--~~--~~~V~--V~~Rs---~~~a~~~a~~~~~~g~~~~~~~~--------~~~a 186 (314)
T PRK06141 124 DASRLLVVGTGRLASLLALAHASV--RP--IKQVR--VWGRD---PAKAEALAAELRAQGFDAEVVTD--------LEAA 186 (314)
T ss_pred CCceEEEECCcHHHHHHHHHHHhc--CC--CCEEE--EEcCC---HHHHHHHHHHHHhcCCceEEeCC--------HHHH
Confidence 35689999988732 33333331 11 12333 34553 2345556555 3555554321 2233
Q ss_pred hcCCCEEEEEeecc
Q 020794 202 VQNTDFLVLARYMQ 215 (321)
Q Consensus 202 l~~~Dlivlag~~~ 215 (321)
++++|+|+++.-..
T Consensus 187 v~~aDIVi~aT~s~ 200 (314)
T PRK06141 187 VRQADIISCATLST 200 (314)
T ss_pred HhcCCEEEEeeCCC
Confidence 45899998876543
No 444
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=20.51 E-value=2.4e+02 Score=27.40 Aligned_cols=71 Identities=15% Similarity=0.105 Sum_probs=38.2
Q ss_pred CCeeEEEEEeCCch--hHHHHHHhhhcCCcCeeEEEEEeCCCCCCCchHHHHHH---HcCCCEEEEcCCcchhHHHHHHH
Q 020794 127 PKYKVAVLASKQEH--CLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLE---RHGIPYHYLCAKENEREEELLEL 201 (321)
Q Consensus 127 ~~~rIavl~S~~g~--~l~~lL~~~~~~~l~~~i~~Vis~~~~~~~~~v~~~a~---~~gIP~~~~~~~~~~~~~~~~~~ 201 (321)
...+++|+|+|.-. -++++... .+.+-+.|. ++. .....++++ +.|+++..+.. ..+.
T Consensus 127 ~~~~lgiiG~G~qA~~~l~al~~~-----~~~~~v~V~-~r~---~~~~~~~~~~~~~~g~~v~~~~~--------~~ea 189 (325)
T TIGR02371 127 DSSVLGIIGAGRQAWTQLEALSRV-----FDLEEVSVY-CRT---PSTREKFALRASDYEVPVRAATD--------PREA 189 (325)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhc-----CCCCEEEEE-CCC---HHHHHHHHHHHHhhCCcEEEeCC--------HHHH
Confidence 35789999988742 23444331 123334344 442 123334443 56777665431 2233
Q ss_pred hcCCCEEEEEeec
Q 020794 202 VQNTDFLVLARYM 214 (321)
Q Consensus 202 l~~~Dlivlag~~ 214 (321)
++++|+|+++.-.
T Consensus 190 v~~aDiVitaT~s 202 (325)
T TIGR02371 190 VEGCDILVTTTPS 202 (325)
T ss_pred hccCCEEEEecCC
Confidence 4589999987643
No 445
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=20.49 E-value=3.1e+02 Score=30.53 Aligned_cols=82 Identities=10% Similarity=0.013 Sum_probs=49.7
Q ss_pred cEEEEEEcC---CccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHHHHHhhhccc
Q 020794 42 HGIHVFHCP---DEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRS 118 (321)
Q Consensus 42 ~~Iltv~G~---Dr~GIVA~VS~~La~~G~NI~d~~q~~~~l~g~F~Mr~~v~~~~~~~~~~~L~~~L~~la~~lg~~~~ 118 (321)
-..+++.|. +.+|+.++|-+.|+++|+|+.-++|... +.... +.++.. +.+.+.+.|+++. ++ .
T Consensus 317 v~~i~i~~~~~~g~~g~~~~if~~l~~~~I~v~~i~~~~s--~~sis----~~i~~~--~~~~~~~~l~~~~--~~---~ 383 (810)
T PRK09466 317 VCLIELQVPASHDFKLAQKELDQLLKRAQLRPLAVGVHPD--RQLLQ----LAYTSE--VADSALKLLDDAA--LP---G 383 (810)
T ss_pred EEEEEEecCCcCCcchHHHHHHHHHHHCCCeEEEEEecCC--CcEEE----EEEeHH--HHHHHHHHHHhhc--CC---C
Confidence 347788876 7789899999999999999999987643 22222 222211 2344444444432 11 1
Q ss_pred eeeeCCCCCCeeEEEEEeCC
Q 020794 119 VVRVPDIDPKYKVAVLASKQ 138 (321)
Q Consensus 119 ~~r~~~~~~~~rIavl~S~~ 138 (321)
.+ .-....-+|++.|++-
T Consensus 384 ~i--~v~~~~a~VsvVG~gm 401 (810)
T PRK09466 384 EL--KLREGLALVALVGAGV 401 (810)
T ss_pred cE--EEeCCeEEEEEeCCCc
Confidence 12 2234566788888764
No 446
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=20.13 E-value=3e+02 Score=26.94 Aligned_cols=30 Identities=17% Similarity=0.238 Sum_probs=21.9
Q ss_pred HHHHHHcCCCEEEEcCCcchhHHHHHHHhc
Q 020794 174 IRFLERHGIPYHYLCAKENEREEELLELVQ 203 (321)
Q Consensus 174 ~~~a~~~gIP~~~~~~~~~~~~~~~~~~l~ 203 (321)
.+.|++.||.+..+.-..+..++++.+.++
T Consensus 53 ~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~ 82 (295)
T PRK14174 53 AKSCKEIGMNSTVIELPADTTEEHLLKKIE 82 (295)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence 688999999998776444445667777765
No 447
>COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism]
Probab=20.12 E-value=4.9e+02 Score=26.39 Aligned_cols=70 Identities=24% Similarity=0.279 Sum_probs=39.2
Q ss_pred CCCCeeEEEEEeCCchhHHHHHHhhhcCCcCeeEEEEEeCCCCCCCchHHHHHHHcCCCEEEEcCCcchhHHHHHHHhc-
Q 020794 125 IDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ- 203 (321)
Q Consensus 125 ~~~~~rIavl~S~~g~~l~~lL~~~~~~~l~~~i~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~~~~~l~- 203 (321)
.....||..|+||+-..=.+ ++. .+|..++.+| |+..++|..+.|.+. ++++- ...+++.++++
T Consensus 9 ~~~a~kvmLLGSGELGKEva-Ie~---QRLG~eViAV----DrY~~APAmqVAhrs----~Vi~M---lD~~al~avv~r 73 (394)
T COG0027 9 RPQATKVMLLGSGELGKEVA-IEA---QRLGVEVIAV----DRYANAPAMQVAHRS----YVIDM---LDGDALRAVVER 73 (394)
T ss_pred CCCCeEEEEecCCccchHHH-HHH---HhcCCEEEEe----cCcCCChhhhhhhhe----eeeec---cCHHHHHHHHHh
Confidence 34457899999998432111 222 2455787766 233456777766654 22321 12345556664
Q ss_pred -CCCEEE
Q 020794 204 -NTDFLV 209 (321)
Q Consensus 204 -~~Dliv 209 (321)
+||+||
T Consensus 74 ekPd~IV 80 (394)
T COG0027 74 EKPDYIV 80 (394)
T ss_pred hCCCeee
Confidence 788776
Done!