Query 020795
Match_columns 321
No_of_seqs 293 out of 1236
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 05:12:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020795.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020795hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2997 F-box protein FBX9 [Ge 100.0 8.7E-66 1.9E-70 485.2 12.7 289 1-309 46-366 (366)
2 PF12937 F-box-like: F-box-lik 99.3 1.2E-12 2.6E-17 91.8 3.3 46 55-100 2-47 (47)
3 PF00646 F-box: F-box domain; 98.7 5.3E-09 1.2E-13 72.9 2.3 46 54-99 3-48 (48)
4 smart00256 FBOX A Receptor for 98.6 2.1E-08 4.5E-13 67.0 2.3 40 57-96 1-40 (41)
5 KOG3926 F-box proteins [Amino 98.0 5.3E-06 1.2E-10 78.5 3.3 105 51-158 199-309 (332)
6 KOG2120 SCF ubiquitin ligase, 97.8 6.5E-06 1.4E-10 79.5 1.2 48 53-100 97-144 (419)
7 KOG0281 Beta-TrCP (transducin 96.7 0.00093 2E-08 65.6 2.5 47 54-100 75-125 (499)
8 PF06881 Elongin_A: RNA polyme 96.7 0.0027 5.9E-08 52.3 4.8 69 54-129 4-72 (109)
9 KOG0274 Cdc4 and related F-box 95.6 0.0048 1E-07 64.2 1.4 48 54-101 108-155 (537)
10 KOG4341 F-box protein containi 95.0 0.008 1.7E-07 60.5 0.8 51 54-104 72-122 (483)
11 KOG4408 Putative Mg2+ and Co2+ 92.2 0.025 5.4E-07 55.5 -1.5 52 53-104 7-58 (386)
12 PF13013 F-box-like_2: F-box-l 89.6 0.27 5.9E-06 40.9 2.5 33 54-86 22-54 (109)
13 PLN03215 ascorbic acid mannose 88.8 0.28 6.2E-06 49.0 2.5 36 55-90 5-41 (373)
14 KOG2997 F-box protein FBX9 [Ge 71.3 5 0.00011 39.6 3.9 30 71-101 148-187 (366)
15 PF09372 PRANC: PRANC domain; 49.8 13 0.00028 29.5 2.2 24 54-77 72-95 (97)
16 PHA02123 hypothetical protein 44.7 15 0.00034 30.8 1.9 43 129-182 95-139 (146)
17 PF13924 Lipocalin_5: Lipocali 34.3 2.9E+02 0.0062 23.4 10.5 57 155-217 25-89 (140)
18 KOG4341 F-box protein containi 33.4 21 0.00045 36.7 1.2 66 26-100 143-209 (483)
19 PHA03100 ankyrin repeat protei 26.0 42 0.00091 33.4 1.9 28 55-82 449-476 (480)
20 PF11794 HpaB_N: 4-hydroxyphen 25.7 32 0.00068 33.0 0.9 13 227-239 206-218 (264)
21 TIGR03067 Planc_TIGR03067 Plan 21.7 4E+02 0.0088 21.6 6.7 67 160-227 34-106 (107)
No 1
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=100.00 E-value=8.7e-66 Score=485.19 Aligned_cols=289 Identities=34% Similarity=0.546 Sum_probs=261.1
Q ss_pred CCCcccchhhhc-cccccceeeccccccccCCccccCCC---CCCCCC-CCCC--Ccchhc-ccCCHHHHHHHhc-----
Q 020795 1 MTIPAELESSLR-LKTVHHFVTQRPWLDLYGINVRPVAP---FGSVSR-KPYV--DTALIH-RCLPDELLFEVFA----- 67 (321)
Q Consensus 1 ~~~~~~~~~~~~-~~~~~~~~~~rpwl~~~g~~i~~~~p---~~e~~~-~~~~--~pc~iL-~~LP~EILl~ILs----- 67 (321)
++|+|++|+.-+ +++++++.++++||+|+|-...+.++ +.+... ++.+ .||++. +.||+|||+.||.
T Consensus 46 lqI~~diEs~~r~l~~~~~~~~k~~~l~l~~D~~~~~~~~s~f~~tLt~qe~v~~qp~~~~~~~LPdEvLm~I~~~vv~~ 125 (366)
T KOG2997|consen 46 LQIVPDIESKYRYLRSPQGDGVKNSYLELNDDASKMADLLSYFQQTLTFQESVLCQPELISISVLPDEVLMRIFRWVVSS 125 (366)
T ss_pred hcCCchHHHHHHHHhhhhhcccCcchhhccccchhhcCchhccccccccccccccchhhhhhhhCCHHHHHHHHHHHHhh
Confidence 589999999988 99999999999999999999988887 444444 4444 499987 8999999999995
Q ss_pred CCChhhhHhhhccChhhhhccCCChhhHHHHHhhccCCcchhhhhhhccCCCccHHHHHHhCCccccccEEEeccceecC
Q 020795 68 RMSPYDLGKASCVCRKWKYTIRNPVFWRNACLKAWQLSGVVENYKILQSRYEGSWRKMWLLRPRIRIDGLYVSRNTYIRA 147 (321)
Q Consensus 68 ~Ld~~sL~~ls~VCk~f~~L~~de~LWR~lC~~~w~~~~~~~~~~l~~~~y~~sWR~Mf~~RPrIRf~G~YIS~~~YiR~ 147 (321)
.||.+||.++|+|||+|+.+++++++||..|.+.|+...+..+.++..+.|.++||+||++|||+||||||||+++|+|+
T Consensus 126 ~~d~rsL~~~s~vCr~F~~~~R~~~lwR~aC~KvW~~s~~~ln~~~~~sky~~SWR~Mfl~RpRvrFdG~YIS~~tYiR~ 205 (366)
T KOG2997|consen 126 LLDLRSLEQLSLVCRGFYKCARDPELWRLACLKVWQRSCIKLNPKILQSKYYTSWREMFLERPRVRFDGVYISKTTYIRQ 205 (366)
T ss_pred hcchhhHHHhHhhHHHHHHHHcChHHHHHHHHHHHHHhhhccchhhhhhHHHhHHHHHHhhCcceeecceEEEEEeEeec
Confidence 57999999999999999999999999999999999998776666666678889999999999999999999999999999
Q ss_pred Ccccc-cccCceeEEEeeeeeeecCCCceEEeecccchhhhcccccccccCCCceEEEEEEEeCCEEEEEEecCC-----
Q 020795 148 GVAEW-KITNPVHIVCYYRYMRFFPSGRFIYKNSSQKIKDVAKIMNFRAAKADCVFTGHYTLSEEKVEAAVLYPG----- 221 (321)
Q Consensus 148 G~~~~-~~~~Pvh~VtYYRYlRF~pDG~~l~lls~~~P~~VV~~l~~~~~~~~~~~~G~~~l~~d~v~~~~~~~~----- 221 (321)
|++++ +|++|||+||||||+||||||+||+++|++||++||++|+.++.+...++.|+|+++++.|++++..++
T Consensus 206 G~~~~~~~~~PVHlV~YYRYiRFyP~G~~l~~~SsdEP~dvVk~~s~~Nt~~~s~~~g~y~ls~~dv~~al~~~~~~~ps 285 (366)
T KOG2997|consen 206 GENSLDSFYRPVHLVEYYRYIRFYPDGHVLMLTSSDEPQDVVKRLSTRNTRRDSILLGHYRLSQSDVFAALTKSKERTPS 285 (366)
T ss_pred CchhhhhhcCcceeeEEEEEEEecCCCcEEEEeCCcChHHHHHhhhhccCcchhhhcccccccCCchhhhhccCcccCch
Confidence 99999 999999999999999999999999999999999999999999988899999999999988887776321
Q ss_pred -------------CCceEEEEEEEEecCCCCccceeEEeEeEeecCCCCCCCCCCCcccccccccccCCCCCCCCCcccc
Q 020795 222 -------------LRPTVLRIRLRLRGTTAGANNRMDLLSLVTSGMNDNEVNGHDEDILGVVEGWQDDETHNPDVPAVSH 288 (321)
Q Consensus 222 -------------~~~~~f~~~l~l~~~~~g~~nkL~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (321)
..+++|.++|+|++++..+.|+|+|.++. +++|+++|++.++.|++.|
T Consensus 286 ~~~~~r~~~~~v~~~s~tfl~~l~l~~~g~rr~~~L~W~~~~-------------------~~~~~d~et~~se~~l~~~ 346 (366)
T KOG2997|consen 286 DYKYRRGRRVPVQEASQTFLVELQLCGSGHRRFNKLKWIHHS-------------------ITYKSDKETAVSEFPLTKM 346 (366)
T ss_pred hhhhhcccccccccccceeEEEEEEecccchhhhhheeeeee-------------------eeEeecccccccCCccccc
Confidence 12467999999999999999999998875 2478888999999999999
Q ss_pred cCCCCceeeeecccccccccC
Q 020795 289 KRGLTPFVFVPFEEVETSVLN 309 (321)
Q Consensus 289 ~~g~~~~~fv~~~~~~~~~~n 309 (321)
++| .-|++|++++++.++||
T Consensus 347 k~~-~~FsrV~Sy~~d~e~l~ 366 (366)
T KOG2997|consen 347 KTP-LFFSRVKSYTADSERLL 366 (366)
T ss_pred cCc-ceEEEeeeeeccccccC
Confidence 999 88999999999988876
No 2
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=99.31 E-value=1.2e-12 Score=91.79 Aligned_cols=46 Identities=41% Similarity=0.956 Sum_probs=40.8
Q ss_pred ccCCHHHHHHHhcCCChhhhHhhhccChhhhhccCCChhhHHHHHh
Q 020795 55 RCLPDELLFEVFARMSPYDLGKASCVCRKWKYTIRNPVFWRNACLK 100 (321)
Q Consensus 55 ~~LP~EILl~ILs~Ld~~sL~~ls~VCk~f~~L~~de~LWR~lC~~ 100 (321)
..||+||+.+||++|++.|+.++++|||+|+.++.++.+|+++|.+
T Consensus 2 ~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW~~~~~r 47 (47)
T PF12937_consen 2 SSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLWRRLCLR 47 (47)
T ss_dssp CCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHHHHHC--
T ss_pred hHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhhhhhccC
Confidence 5899999999999999999999999999999999999999999864
No 3
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.73 E-value=5.3e-09 Score=72.93 Aligned_cols=46 Identities=30% Similarity=0.650 Sum_probs=40.4
Q ss_pred cccCCHHHHHHHhcCCChhhhHhhhccChhhhhccCCChhhHHHHH
Q 020795 54 HRCLPDELLFEVFARMSPYDLGKASCVCRKWKYTIRNPVFWRNACL 99 (321)
Q Consensus 54 L~~LP~EILl~ILs~Ld~~sL~~ls~VCk~f~~L~~de~LWR~lC~ 99 (321)
+..||+|++.+||++|++.++.++++|||+|+.++.+..+|+..|+
T Consensus 3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~~~~r 48 (48)
T PF00646_consen 3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWKKIIR 48 (48)
T ss_dssp HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHHHH-
T ss_pred HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccHHHhC
Confidence 4789999999999999999999999999999999999999999874
No 4
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.61 E-value=2.1e-08 Score=67.00 Aligned_cols=40 Identities=38% Similarity=0.757 Sum_probs=38.5
Q ss_pred CCHHHHHHHhcCCChhhhHhhhccChhhhhccCCChhhHH
Q 020795 57 LPDELLFEVFARMSPYDLGKASCVCRKWKYTIRNPVFWRN 96 (321)
Q Consensus 57 LP~EILl~ILs~Ld~~sL~~ls~VCk~f~~L~~de~LWR~ 96 (321)
||+|++.+||++|++.|+.++++|||+|+.++.++.+|+.
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~~ 40 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWFK 40 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhhc
Confidence 7999999999999999999999999999999999999975
No 5
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=97.95 E-value=5.3e-06 Score=78.45 Aligned_cols=105 Identities=18% Similarity=0.321 Sum_probs=74.1
Q ss_pred chhcccCCHHHHHHHhcCC-ChhhhHhhhccChhhhhccCCChhhHHHHHhhccCCcchhhhhhhccCCCccHHHHHHhC
Q 020795 51 ALIHRCLPDELLFEVFARM-SPYDLGKASCVCRKWKYTIRNPVFWRNACLKAWQLSGVVENYKILQSRYEGSWRKMWLLR 129 (321)
Q Consensus 51 c~iL~~LP~EILl~ILs~L-d~~sL~~ls~VCk~f~~L~~de~LWR~lC~~~w~~~~~~~~~~l~~~~y~~sWR~Mf~~R 129 (321)
.+.+.+||.|++..|+..| |..||..+|+|--.++.++++..|||.+|+..|..-.+.. ..+.......+||+||.+-
T Consensus 199 ~ltl~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e~~iWkkLcqfHF~erQi~~-~l~l~k~~q~dWkqmyf~L 277 (332)
T KOG3926|consen 199 GLTLHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEERRIWKKLCQFHFNERQIHT-ILILSKKGQKDWKQMYFQL 277 (332)
T ss_pred CCCcccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHH-hhhhccccchhHHHHHHHH
Confidence 3457899999999999887 8999999999999999999999999999999886533322 1223344457899999864
Q ss_pred Ccccccc---EEEeccceecCCccc-c-cccCce
Q 020795 130 PRIRIDG---LYVSRNTYIRAGVAE-W-KITNPV 158 (321)
Q Consensus 130 PrIRf~G---~YIS~~~YiR~G~~~-~-~~~~Pv 158 (321)
. |..| .|-.+.+.+|+=-.- | +...|+
T Consensus 278 ~--r~yg~keqyad~lhlCrhC~~LfWks~gHPC 309 (332)
T KOG3926|consen 278 R--RTYGVKEQYADTLHLCRHCCILFWKSDGHPC 309 (332)
T ss_pred H--HhcChHHHHHHHHHHHhhceEeeecCCCCCc
Confidence 2 2223 344444445554332 2 334554
No 6
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.81 E-value=6.5e-06 Score=79.51 Aligned_cols=48 Identities=27% Similarity=0.531 Sum_probs=44.3
Q ss_pred hcccCCHHHHHHHhcCCChhhhHhhhccChhhhhccCCChhhHHHHHh
Q 020795 53 IHRCLPDELLFEVFARMSPYDLGKASCVCRKWKYTIRNPVFWRNACLK 100 (321)
Q Consensus 53 iL~~LP~EILl~ILs~Ld~~sL~~ls~VCk~f~~L~~de~LWR~lC~~ 100 (321)
-...|||||++.||+.|.-++|.+++.|||+||.++.++.+|..+-..
T Consensus 97 ~~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~lDl~ 144 (419)
T KOG2120|consen 97 SWDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQTLDLT 144 (419)
T ss_pred CcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceeeeccC
Confidence 357999999999999999999999999999999999999999887543
No 7
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=96.70 E-value=0.00093 Score=65.57 Aligned_cols=47 Identities=19% Similarity=0.562 Sum_probs=44.5
Q ss_pred cccCC----HHHHHHHhcCCChhhhHhhhccChhhhhccCCChhhHHHHHh
Q 020795 54 HRCLP----DELLFEVFARMSPYDLGKASCVCRKWKYTIRNPVFWRNACLK 100 (321)
Q Consensus 54 L~~LP----~EILl~ILs~Ld~~sL~~ls~VCk~f~~L~~de~LWR~lC~~ 100 (321)
.+.|| ++|...||+|||..||..|-+|||+|+.+.++..+||.+..+
T Consensus 75 i~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~WKkLie~ 125 (499)
T KOG0281|consen 75 ITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGMLWKKLIER 125 (499)
T ss_pred HHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchHHHHHHHH
Confidence 47899 999999999999999999999999999999999999999876
No 8
>PF06881 Elongin_A: RNA polymerase II transcription factor SIII (Elongin) subunit A; InterPro: IPR010684 This family represents a conserved region within RNA polymerase II transcription factor SIII (Elongin) subunit A. In mammals, the Elongin complex activates elongation by RNA polymerase II by suppressing transient pausing of the polymerase at many sites within transcription units. Elongin is a heterotrimer composed of A, B, and C subunits of 110, 18, and 15 kilodaltons, respectively. Subunit A has been shown to function as the transcriptionally active component of Elongin [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus, 0016021 integral to membrane
Probab=96.68 E-value=0.0027 Score=52.34 Aligned_cols=69 Identities=14% Similarity=0.240 Sum_probs=52.1
Q ss_pred cccCCHHHHHHHhcCCChhhhHhhhccChhhhhccCCChhhHHHHHhhccCCcchhhhhhhccCCCccHHHHHHhC
Q 020795 54 HRCLPDELLFEVFARMSPYDLGKASCVCRKWKYTIRNPVFWRNACLKAWQLSGVVENYKILQSRYEGSWRKMWLLR 129 (321)
Q Consensus 54 L~~LP~EILl~ILs~Ld~~sL~~ls~VCk~f~~L~~de~LWR~lC~~~w~~~~~~~~~~l~~~~y~~sWR~Mf~~R 129 (321)
+..+|.+++..||..+++..|.++-..|..+. -.++.||+.+|.+.|+...... ......+||++|...
T Consensus 4 vG~~py~ll~piL~~~~~~QL~~iE~~np~l~--~~tdeLW~~~i~rdFp~~~~~~-----~~~~~~~Wr~~Y~~~ 72 (109)
T PF06881_consen 4 VGDVPYHLLRPILEKCSPEQLRRIEDNNPHLI--EDTDELWKKLIKRDFPEESKRQ-----KPKEPESWRELYEKL 72 (109)
T ss_pred cCCCCHHHHHHHHccCCHHHHHHHHHhCCCcc--hhhHHHHHHHHHhHCcChhhcc-----cccccchHHHHHHHH
Confidence 35799999999999999999999999885332 3467999999999998621110 112236999999863
No 9
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=95.62 E-value=0.0048 Score=64.15 Aligned_cols=48 Identities=25% Similarity=0.533 Sum_probs=45.1
Q ss_pred cccCCHHHHHHHhcCCChhhhHhhhccChhhhhccCCChhhHHHHHhh
Q 020795 54 HRCLPDELLFEVFARMSPYDLGKASCVCRKWKYTIRNPVFWRNACLKA 101 (321)
Q Consensus 54 L~~LP~EILl~ILs~Ld~~sL~~ls~VCk~f~~L~~de~LWR~lC~~~ 101 (321)
+..||.|+..+||.+||++++.++++||+.|+.++.++..|.+.|...
T Consensus 108 i~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~~~~~~~ 155 (537)
T KOG0274|consen 108 LSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWWRMCREL 155 (537)
T ss_pred hhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhhhhhhhh
Confidence 589999999999999999999999999999999999998898888765
No 10
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=95.05 E-value=0.008 Score=60.52 Aligned_cols=51 Identities=29% Similarity=0.545 Sum_probs=47.1
Q ss_pred cccCCHHHHHHHhcCCChhhhHhhhccChhhhhccCCChhhHHHHHhhccC
Q 020795 54 HRCLPDELLFEVFARMSPYDLGKASCVCRKWKYTIRNPVFWRNACLKAWQL 104 (321)
Q Consensus 54 L~~LP~EILl~ILs~Ld~~sL~~ls~VCk~f~~L~~de~LWR~lC~~~w~~ 104 (321)
--.||.|+++.||++||..++.+++++|+.|+.++.|-.-|.++-+-+++.
T Consensus 72 ~~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~~~q~idL~t~~r 122 (483)
T KOG4341|consen 72 SRSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGSCWQHIDLFTFQR 122 (483)
T ss_pred cccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccccceeeehhcchh
Confidence 357999999999999999999999999999999999999999988877764
No 11
>KOG4408 consensus Putative Mg2+ and Co2+ transporter CorD [Inorganic ion transport and metabolism]
Probab=92.21 E-value=0.025 Score=55.46 Aligned_cols=52 Identities=23% Similarity=0.263 Sum_probs=48.0
Q ss_pred hcccCCHHHHHHHhcCCChhhhHhhhccChhhhhccCCChhhHHHHHhhccC
Q 020795 53 IHRCLPDELLFEVFARMSPYDLGKASCVCRKWKYTIRNPVFWRNACLKAWQL 104 (321)
Q Consensus 53 iL~~LP~EILl~ILs~Ld~~sL~~ls~VCk~f~~L~~de~LWR~lC~~~w~~ 104 (321)
.+..+|+.+++.|++++..+++.++|+|.+++..+.++..+|++.|.+.|..
T Consensus 7 ~le~~~~~~l~~vls~~~~~~~~~~a~vs~rLk~~~s~~~lw~r~c~k~l~i 58 (386)
T KOG4408|consen 7 GLEWLPRDPLHLVLSFLLYRDLINCAYVSRRLKELGSHLPLWNRPCKKYLLI 58 (386)
T ss_pred chhhcccccceeeecccchhhhhcceeechHHhhhhhccccccccccccccc
Confidence 4678999999999999999999999999999999999999999999776654
No 12
>PF13013 F-box-like_2: F-box-like domain
Probab=89.57 E-value=0.27 Score=40.91 Aligned_cols=33 Identities=30% Similarity=0.248 Sum_probs=28.8
Q ss_pred cccCCHHHHHHHhcCCChhhhHhhhccChhhhh
Q 020795 54 HRCLPDELLFEVFARMSPYDLGKASCVCRKWKY 86 (321)
Q Consensus 54 L~~LP~EILl~ILs~Ld~~sL~~ls~VCk~f~~ 86 (321)
+.+||+||+..|+.+.+..++..++.+|+..+.
T Consensus 22 l~DLP~ELl~~I~~~C~~~~l~~l~~~~~~~r~ 54 (109)
T PF13013_consen 22 LLDLPWELLQLIFDYCNDPILLALSRTCRAYRS 54 (109)
T ss_pred hhhChHHHHHHHHhhcCcHHHHHHHHHHHHHHH
Confidence 578999999999999999999989999885443
No 13
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=88.78 E-value=0.28 Score=48.96 Aligned_cols=36 Identities=31% Similarity=0.715 Sum_probs=32.1
Q ss_pred ccCCHHHHHHHhcCC-ChhhhHhhhccChhhhhccCC
Q 020795 55 RCLPDELLFEVFARM-SPYDLGKASCVCRKWKYTIRN 90 (321)
Q Consensus 55 ~~LP~EILl~ILs~L-d~~sL~~ls~VCk~f~~L~~d 90 (321)
+.||+|||..|...| ..-|+.+++.||+.|+..+..
T Consensus 5 s~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~ 41 (373)
T PLN03215 5 STLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSG 41 (373)
T ss_pred hhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccc
Confidence 689999999999999 567999999999999987553
No 14
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=71.31 E-value=5 Score=39.61 Aligned_cols=30 Identities=20% Similarity=0.506 Sum_probs=17.1
Q ss_pred hhhhHhhhccChhhhhccCC----------ChhhHHHHHhh
Q 020795 71 PYDLGKASCVCRKWKYTIRN----------PVFWRNACLKA 101 (321)
Q Consensus 71 ~~sL~~ls~VCk~f~~L~~d----------e~LWR~lC~~~ 101 (321)
..++-+.+|+ |-|..-+-+ ...||...++.
T Consensus 148 ~~~lwR~aC~-KvW~~s~~~ln~~~~~sky~~SWR~Mfl~R 187 (366)
T KOG2997|consen 148 DPELWRLACL-KVWQRSCIKLNPKILQSKYYTSWREMFLER 187 (366)
T ss_pred ChHHHHHHHH-HHHHHhhhccchhhhhhHHHhHHHHHHhhC
Confidence 3456666666 555543322 36788877663
No 15
>PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins. The PRANC (Pox proteins Repeats of ANkyrin, C-terminal) domain is also found on its own in some proteins []. The function of this domain is unknown, but it appears to be related to the F-box domain and may play a similar role.
Probab=49.80 E-value=13 Score=29.52 Aligned_cols=24 Identities=29% Similarity=0.441 Sum_probs=21.4
Q ss_pred cccCCHHHHHHHhcCCChhhhHhh
Q 020795 54 HRCLPDELLFEVFARMSPYDLGKA 77 (321)
Q Consensus 54 L~~LP~EILl~ILs~Ld~~sL~~l 77 (321)
...||.||-..||++|+-.||..+
T Consensus 72 w~~LP~EIk~~Il~~L~~~dL~~l 95 (97)
T PF09372_consen 72 WNILPIEIKYKILEYLSNKDLKKL 95 (97)
T ss_pred hhhCCHHHHHHHHHcCCHHHHHHH
Confidence 479999999999999999998654
No 16
>PHA02123 hypothetical protein
Probab=44.68 E-value=15 Score=30.81 Aligned_cols=43 Identities=35% Similarity=0.607 Sum_probs=33.3
Q ss_pred CCccccccEEEeccceecCCccc--ccccCceeEEEeeeeeeecCCCceEEeeccc
Q 020795 129 RPRIRIDGLYVSRNTYIRAGVAE--WKITNPVHIVCYYRYMRFFPSGRFIYKNSSQ 182 (321)
Q Consensus 129 RPrIRf~G~YIS~~~YiR~G~~~--~~~~~Pvh~VtYYRYlRF~pDG~~l~lls~~ 182 (321)
|-.|-+||+ +-.+.|+|.|.+. |+..||. |.|-|.|++.+|+.
T Consensus 95 rvmis~~gi-vqnv~yirsgsaivi~r~dnp~----------fnp~g~v~sitt~~ 139 (146)
T PHA02123 95 RVMISLNGI-VQNVDYIRSGSAIVIRRMDNPT----------FNPIGDVLSITTSS 139 (146)
T ss_pred EEEEEecce-EeeeEEEecCcEEEEEecCCCC----------CCcccceEEEecCC
Confidence 445778997 4457899999875 4667884 88999999998764
No 17
>PF13924 Lipocalin_5: Lipocalin-like domain
Probab=34.34 E-value=2.9e+02 Score=23.36 Aligned_cols=57 Identities=21% Similarity=0.362 Sum_probs=32.4
Q ss_pred cCceeEEEeeeeeeecCCCceEEeecccchhhhccccccc--------ccCCCceEEEEEEEeCCEEEEEE
Q 020795 155 TNPVHIVCYYRYMRFFPSGRFIYKNSSQKIKDVAKIMNFR--------AAKADCVFTGHYTLSEEKVEAAV 217 (321)
Q Consensus 155 ~~Pvh~VtYYRYlRF~pDG~~l~lls~~~P~~VV~~l~~~--------~~~~~~~~~G~~~l~~d~v~~~~ 217 (321)
.+|..++.| -+||.+-..++...+..+...-... ..+.--++.|+|+++++.|+-.+
T Consensus 25 ~~p~G~l~Y------t~dG~ms~~i~~~~r~~~~~~~~~~~t~~e~~~~~~~~~aY~G~y~v~~~~v~h~v 89 (140)
T PF13924_consen 25 PDPSGLLIY------TPDGYMSAQIMRPDRPPFASPDKWNATDAEWAAAARGYLAYSGRYEVDEDTVTHHV 89 (140)
T ss_pred CCCcEEEEE------CCCCeEEEEEecCCCCCcCcCccccCCHHHHHHHhhhheEEEEEEEEcCcEEEEEE
Confidence 367776654 6999875555444433321111111 11233588999999999665443
No 18
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=33.42 E-value=21 Score=36.68 Aligned_cols=66 Identities=17% Similarity=0.109 Sum_probs=44.6
Q ss_pred ccccCCccccCCCCCCCCCCCCCCcchhcccCCHHHHHHHhcCCChhhhHhhhccChhhhhccCCC-hhhHHHHHh
Q 020795 26 LDLYGINVRPVAPFGSVSRKPYVDTALIHRCLPDELLFEVFARMSPYDLGKASCVCRKWKYTIRNP-VFWRNACLK 100 (321)
Q Consensus 26 l~~~g~~i~~~~p~~e~~~~~~~~pc~iL~~LP~EILl~ILs~Ld~~sL~~ls~VCk~f~~L~~de-~LWR~lC~~ 100 (321)
|+++|.+-.+..+...... -|+-+..| ++.--+ +++-.++.+++.+|++|+++..+. ..|-..-++
T Consensus 143 LSlrG~r~v~~sslrt~~~-----~CpnIehL--~l~gc~--~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk 209 (483)
T KOG4341|consen 143 LSLRGCRAVGDSSLRTFAS-----NCPNIEHL--ALYGCK--KITDSSLLSLARYCRKLRHLNLHSCSSITDVSLK 209 (483)
T ss_pred ccccccccCCcchhhHHhh-----hCCchhhh--hhhcce--eccHHHHHHHHHhcchhhhhhhcccchhHHHHHH
Confidence 4456666555444433222 24444555 333333 789999999999999999999998 888887665
No 19
>PHA03100 ankyrin repeat protein; Provisional
Probab=25.97 E-value=42 Score=33.39 Aligned_cols=28 Identities=21% Similarity=0.260 Sum_probs=23.7
Q ss_pred ccCCHHHHHHHhcCCChhhhHhhhccCh
Q 020795 55 RCLPDELLFEVFARMSPYDLGKASCVCR 82 (321)
Q Consensus 55 ~~LP~EILl~ILs~Ld~~sL~~ls~VCk 82 (321)
..||.||...|+++|+-.||..+..-|+
T Consensus 449 ~~lP~Eik~~Il~~l~~~dl~~~~~~~~ 476 (480)
T PHA03100 449 NILPIEIKYKILEYLSNRDLKSLIENFT 476 (480)
T ss_pred hhCcHHHHHHHHHhCCHHHHHHHHhhhc
Confidence 5899999999999999999877665544
No 20
>PF11794 HpaB_N: 4-hydroxyphenylacetate 3-hydroxylase N terminal; InterPro: IPR024674 This domain is found in the N terminus of HpaB, which encodes part of the 4-hydroxyphenylacetate 3-hydroxylase from Escherichia coli []. The enzyme is NADH-dependent and uses FAD as the redox chromophore. The domain is also found in pyoverdin chromophore biosynthetic protein (PvcC), which may play a role in one of the proposed hydroxylation steps of pyoverdine chromophore biosynthesis [] and in 4-hydroxybutyryl-CoA dehydratase (4-BUDH), a key enzyme in the metabolism of gamma-aminobutyrate [].; PDB: 3HWC_D 1U8V_D 2YYM_A 2YYI_A 2YYJ_A 2YYL_A 2YYG_A 2YYK_A.
Probab=25.67 E-value=32 Score=32.96 Aligned_cols=13 Identities=15% Similarity=0.273 Sum_probs=7.9
Q ss_pred EEEEEEEecCCCC
Q 020795 227 LRIRLRLRGTTAG 239 (321)
Q Consensus 227 f~~~l~l~~~~~g 239 (321)
|-+-+.+-...+|
T Consensus 206 yAv~FavP~~tpG 218 (264)
T PF11794_consen 206 YAVAFAVPMNTPG 218 (264)
T ss_dssp G-EEEEEETT-TT
T ss_pred eEEEEEccCCCCC
Confidence 4567777777777
No 21
>TIGR03067 Planc_TIGR03067 Planctomycetes uncharacterized domain TIGR03067. This domain occurs in several species, mostly from the Planctomycetes division of the bacteria. It is expanded into a paralogous family of at least twenty-five members in Gemmata obscuriglobus UQM 2246. This family appears related to TIGR03066, which also is expanded into a large paralogous family in Gemmata obscuriglobus.
Probab=21.70 E-value=4e+02 Score=21.65 Aligned_cols=67 Identities=13% Similarity=0.045 Sum_probs=36.0
Q ss_pred EEEeeeeeeecCCCceE----EeecccchhhhcccccccccCCCceEEEEEEEeCCEEEEEEecCCC--CceEE
Q 020795 160 IVCYYRYMRFFPSGRFI----YKNSSQKIKDVAKIMNFRAAKADCVFTGHYTLSEEKVEAAVLYPGL--RPTVL 227 (321)
Q Consensus 160 ~VtYYRYlRF~pDG~~l----~lls~~~P~~VV~~l~~~~~~~~~~~~G~~~l~~d~v~~~~~~~~~--~~~~f 227 (321)
.++-=+|---..++..+ .+-++.+|+.+==... ..+.....++|-|+|++|+..+-...+|. +++.|
T Consensus 34 ~~~g~~~~~~~~~~~~~~~~~~Ld~~~~Pk~id~~~~-~g~~~g~~~~gIY~l~gd~L~vC~~~~g~~~RPt~F 106 (107)
T TIGR03067 34 TFKGDKLTVKDGEGDQGKGTFKLDPAANPKTIDLTSP-DGPDKGKTIKGIYKLDGDTLTVCFSGGGDKPRPTEF 106 (107)
T ss_pred EEeCCEEEEEcCCCcceeEEEEECCCCCccEEEEEcc-CCCCCCCEEEEEEEEcCCEEEEEECCCCCCCCCCCC
Confidence 34444555555666532 2324445544322111 11223358999999999977665545554 66654
Done!