Query 020795
Match_columns 321
No_of_seqs 293 out of 1236
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 08:18:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020795.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020795hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1fs1_A SKP2 F-BOX, cyclin A/CD 99.1 2.2E-11 7.5E-16 86.1 3.5 44 54-97 9-52 (53)
2 2e31_A FBS1, F-box only protei 99.1 4.1E-11 1.4E-15 113.7 4.7 75 53-133 50-125 (297)
3 3l2o_B F-box only protein 4; s 98.8 1.4E-09 4.7E-14 103.3 3.1 48 54-101 5-52 (312)
4 2ovr_B FBW7, F-BOX/WD repeat p 98.7 4E-09 1.4E-13 100.3 4.0 77 54-130 19-97 (445)
5 3v7d_B Cell division control p 98.6 9.9E-09 3.4E-13 97.5 3.4 49 54-102 15-64 (464)
6 1p22_A F-BOX/WD-repeat protein 98.6 8.7E-09 3E-13 98.0 2.6 50 54-103 11-64 (435)
7 2ast_B S-phase kinase-associat 97.8 7.2E-06 2.5E-10 75.3 2.7 47 54-100 9-55 (336)
8 2p1m_B Transport inhibitor res 96.8 0.00049 1.7E-08 67.8 2.9 34 54-87 6-40 (594)
9 4hfx_A Transcription elongatio 96.4 0.0013 4.6E-08 52.4 2.3 62 56-128 12-73 (97)
10 3ogk_B Coronatine-insensitive 96.1 0.0016 5.6E-08 64.1 1.9 33 55-87 14-47 (592)
11 4gzv_A Hypothetical protein; A 53.6 49 0.0017 27.7 7.7 77 169-262 41-122 (142)
12 4i95_A Putative uncharacterize 21.9 3.3E+02 0.011 22.6 7.5 68 201-279 61-133 (142)
13 2k3u_B C5AR(P7-28S) peptide, c 21.0 35 0.0012 20.0 1.0 17 300-316 9-25 (26)
No 1
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=99.13 E-value=2.2e-11 Score=86.12 Aligned_cols=44 Identities=32% Similarity=0.655 Sum_probs=40.0
Q ss_pred cccCCHHHHHHHhcCCChhhhHhhhccChhhhhccCCChhhHHH
Q 020795 54 HRCLPDELLFEVFARMSPYDLGKASCVCRKWKYTIRNPVFWRNA 97 (321)
Q Consensus 54 L~~LP~EILl~ILs~Ld~~sL~~ls~VCk~f~~L~~de~LWR~l 97 (321)
+..||+||+.+||++|++.|+.++++|||+|+.++.++.+||.+
T Consensus 9 ~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~~~~lW~~l 52 (53)
T 1fs1_A 9 WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTL 52 (53)
T ss_dssp CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGGC---
T ss_pred HHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHhc
Confidence 58999999999999999999999999999999999999999975
No 2
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=99.10 E-value=4.1e-11 Score=113.68 Aligned_cols=75 Identities=23% Similarity=0.476 Sum_probs=60.6
Q ss_pred hcccCCHHHHHHHhcCCChhhhH-hhhccChhhhhccCCChhhHHHHHhhccCCcchhhhhhhccCCCccHHHHHHhCCc
Q 020795 53 IHRCLPDELLFEVFARMSPYDLG-KASCVCRKWKYTIRNPVFWRNACLKAWQLSGVVENYKILQSRYEGSWRKMWLLRPR 131 (321)
Q Consensus 53 iL~~LP~EILl~ILs~Ld~~sL~-~ls~VCk~f~~L~~de~LWR~lC~~~w~~~~~~~~~~l~~~~y~~sWR~Mf~~RPr 131 (321)
.+..||+|||.+||++|++++|. +|++|||+|+.|+.++.+|+.+|++.+-..... ......+||++|..+++
T Consensus 50 ~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~~~~~w~~~~~~~g~~~~~~------~~~~~~~Wk~~y~~~~~ 123 (297)
T 2e31_A 50 YLAELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGAPLWLLKCQQEGLVPEGS------ADEERDHWQQFYFLSKR 123 (297)
T ss_dssp CTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHHTSHHHHHHHHHHTTCCCC-----------CCSCHHHHHHHHHH
T ss_pred ChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHhcChHHHHHHhhccCcccccc------cCCCCCChhhhheheec
Confidence 35899999999999999999999 999999999999999999999999983221111 11245789999999876
Q ss_pred cc
Q 020795 132 IR 133 (321)
Q Consensus 132 IR 133 (321)
-|
T Consensus 124 gR 125 (297)
T 2e31_A 124 RR 125 (297)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 3
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.81 E-value=1.4e-09 Score=103.28 Aligned_cols=48 Identities=27% Similarity=0.562 Sum_probs=46.6
Q ss_pred cccCCHHHHHHHhcCCChhhhHhhhccChhhhhccCCChhhHHHHHhh
Q 020795 54 HRCLPDELLFEVFARMSPYDLGKASCVCRKWKYTIRNPVFWRNACLKA 101 (321)
Q Consensus 54 L~~LP~EILl~ILs~Ld~~sL~~ls~VCk~f~~L~~de~LWR~lC~~~ 101 (321)
++.||+||+++||++|+|+||+++++|||+|+.+++|+.|||.+|++.
T Consensus 5 l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~la~D~~LWr~~l~rd 52 (312)
T 3l2o_B 5 LTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWRYFLLRD 52 (312)
T ss_dssp HHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHHHTCHHHHHHHHHSS
T ss_pred hHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccchHHHHHHhcc
Confidence 589999999999999999999999999999999999999999999985
No 4
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=98.74 E-value=4e-09 Score=100.29 Aligned_cols=77 Identities=22% Similarity=0.467 Sum_probs=57.3
Q ss_pred cccCCHHHHHHHhcCCChhhhHhhhccChhhhhccCCChhhHHHHHhhccCCcch-hhhhh-hccCCCccHHHHHHhCC
Q 020795 54 HRCLPDELLFEVFARMSPYDLGKASCVCRKWKYTIRNPVFWRNACLKAWQLSGVV-ENYKI-LQSRYEGSWRKMWLLRP 130 (321)
Q Consensus 54 L~~LP~EILl~ILs~Ld~~sL~~ls~VCk~f~~L~~de~LWR~lC~~~w~~~~~~-~~~~l-~~~~y~~sWR~Mf~~RP 130 (321)
+..||+|++.+||++|++.+|.++++|||+|+.++.++.+|+.+|++........ ...+. ........||..|..+.
T Consensus 19 ~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wk~~~~~~~ 97 (445)
T 2ovr_B 19 ISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRRKVIKPGFIHSPWKSAYIRQH 97 (445)
T ss_dssp TTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHHHTTTTCCSCCCCCC--CCSSCCCCCHHHHHHHHHH
T ss_pred hHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhhcCchhHhhhheeecccccccccccceecCCCccCCcHHHHHhhhh
Confidence 6899999999999999999999999999999999999999999998764221110 00000 01112367999887653
No 5
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=98.64 E-value=9.9e-09 Score=97.46 Aligned_cols=49 Identities=20% Similarity=0.413 Sum_probs=46.3
Q ss_pred cccCCHHHHHHHhcCCChhhhHhhhccChhhhhccCC-ChhhHHHHHhhc
Q 020795 54 HRCLPDELLFEVFARMSPYDLGKASCVCRKWKYTIRN-PVFWRNACLKAW 102 (321)
Q Consensus 54 L~~LP~EILl~ILs~Ld~~sL~~ls~VCk~f~~L~~d-e~LWR~lC~~~w 102 (321)
+..||+||+++||++||+.+|.++++|||+|+.++.+ +.+||.+|++..
T Consensus 15 ~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~~w~~~~~~~~ 64 (464)
T 3v7d_B 15 ITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLLISEN 64 (464)
T ss_dssp HHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTTCHHHHHHHHHHTT
T ss_pred hHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhccc
Confidence 5899999999999999999999999999999999998 799999998764
No 6
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=98.63 E-value=8.7e-09 Score=98.05 Aligned_cols=50 Identities=16% Similarity=0.424 Sum_probs=47.5
Q ss_pred cccCCHH----HHHHHhcCCChhhhHhhhccChhhhhccCCChhhHHHHHhhcc
Q 020795 54 HRCLPDE----LLFEVFARMSPYDLGKASCVCRKWKYTIRNPVFWRNACLKAWQ 103 (321)
Q Consensus 54 L~~LP~E----ILl~ILs~Ld~~sL~~ls~VCk~f~~L~~de~LWR~lC~~~w~ 103 (321)
+..||+| |+.+||++||+.+|.++++|||+|+.++.++.+||.+|.+.+.
T Consensus 11 ~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~w~~~~~~~~~ 64 (435)
T 1p22_A 11 ITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERMVR 64 (435)
T ss_dssp HHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHT
T ss_pred HHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhcC
Confidence 5899999 9999999999999999999999999999999999999998753
No 7
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=97.80 E-value=7.2e-06 Score=75.34 Aligned_cols=47 Identities=32% Similarity=0.620 Sum_probs=42.9
Q ss_pred cccCCHHHHHHHhcCCChhhhHhhhccChhhhhccCCChhhHHHHHh
Q 020795 54 HRCLPDELLFEVFARMSPYDLGKASCVCRKWKYTIRNPVFWRNACLK 100 (321)
Q Consensus 54 L~~LP~EILl~ILs~Ld~~sL~~ls~VCk~f~~L~~de~LWR~lC~~ 100 (321)
+..||+|++.+||++|+..++.+++.|||+|+.++.++.+|+.+-..
T Consensus 9 ~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~~~~l~l~ 55 (336)
T 2ast_B 9 WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDLT 55 (336)
T ss_dssp SSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTTSSEEECT
T ss_pred hhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchhheeeccc
Confidence 48999999999999999999999999999999999888999876543
No 8
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=96.80 E-value=0.00049 Score=67.77 Aligned_cols=34 Identities=29% Similarity=0.528 Sum_probs=29.4
Q ss_pred cccCCHHHHHHHhcCCC-hhhhHhhhccChhhhhc
Q 020795 54 HRCLPDELLFEVFARMS-PYDLGKASCVCRKWKYT 87 (321)
Q Consensus 54 L~~LP~EILl~ILs~Ld-~~sL~~ls~VCk~f~~L 87 (321)
++.||+|+|.+||++|+ .+++.++++|||+|+.+
T Consensus 6 ~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~ 40 (594)
T 2p1m_B 6 ALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEI 40 (594)
T ss_dssp ----CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHH
T ss_pred hhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHh
Confidence 57999999999999999 99999999999999988
No 9
>4hfx_A Transcription elongation factor B polypeptide 3; structural genomics, PSI-biology, northeast structural genom consortium, NESG; 2.54A {Homo sapiens}
Probab=96.38 E-value=0.0013 Score=52.37 Aligned_cols=62 Identities=21% Similarity=0.375 Sum_probs=36.0
Q ss_pred cCCHHHHHHHhcCCChhhhHhhhccChhhhhccCCChhhHHHHHhhccCCcchhhhhhhccCCCccHHHHHHh
Q 020795 56 CLPDELLFEVFARMSPYDLGKASCVCRKWKYTIRNPVFWRNACLKAWQLSGVVENYKILQSRYEGSWRKMWLL 128 (321)
Q Consensus 56 ~LP~EILl~ILs~Ld~~sL~~ls~VCk~f~~L~~de~LWR~lC~~~w~~~~~~~~~~l~~~~y~~sWR~Mf~~ 128 (321)
..|.+||.-||...+|..|.++=.-|- ..+-.++.||+.+|.+.|+... +....+||+||..
T Consensus 12 ~~Py~lL~PVLek~tp~QL~~IE~~nP--~L~~dTdeLWk~~c~rdF~~~~---------p~e~esWRelY~r 73 (97)
T 4hfx_A 12 GVPYSVLEPVLERCTPDQLYRIEEYNH--VLIEETDQLWKVHCHRDFKEER---------PEEYESWREMYLR 73 (97)
T ss_dssp --------CCGGGCCHHHHHHHHTC--------CCHHHHHHHC----CCSC---------CCSSSCHHHHHHH
T ss_pred CCcHHHHHHHHccCCHHHHHHHHHhCc--ccchhhHHHHHHHHHhHCcccC---------CCCCCCHHHHHHH
Confidence 568999999999999999999888887 3345667999999999998532 1234799999985
No 10
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=96.12 E-value=0.0016 Score=64.12 Aligned_cols=33 Identities=30% Similarity=0.544 Sum_probs=31.3
Q ss_pred ccCCHHHHHHHhcCC-ChhhhHhhhccChhhhhc
Q 020795 55 RCLPDELLFEVFARM-SPYDLGKASCVCRKWKYT 87 (321)
Q Consensus 55 ~~LP~EILl~ILs~L-d~~sL~~ls~VCk~f~~L 87 (321)
..||+|+|.+||++| +.+++.+++.|||+|+.+
T Consensus 14 ~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~ 47 (592)
T 3ogk_B 14 VATVDDVIEQVMTYITDPKDRDSASLVCRRWFKI 47 (592)
T ss_dssp CCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHH
T ss_pred CCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHh
Confidence 479999999999999 899999999999999987
No 11
>4gzv_A Hypothetical protein; AN eight-stranded beta barrel, lipocalin family, structural joint center for structural genomics, JCSG; 1.95A {Bacteroides ovatus}
Probab=53.62 E-value=49 Score=27.68 Aligned_cols=77 Identities=17% Similarity=0.233 Sum_probs=46.5
Q ss_pred ecCCCceEEeecccchhhhcccccccccCCCceEEEEEEEeCCEEEEEEe-----cCCCCceEEEEEEEEecCCCCccce
Q 020795 169 FFPSGRFIYKNSSQKIKDVAKIMNFRAAKADCVFTGHYTLSEEKVEAAVL-----YPGLRPTVLRIRLRLRGTTAGANNR 243 (321)
Q Consensus 169 F~pDG~~l~lls~~~P~~VV~~l~~~~~~~~~~~~G~~~l~~d~v~~~~~-----~~~~~~~~f~~~l~l~~~~~g~~nk 243 (321)
..+|||+.-++.......+ =...|.|.+..|....+-+ .|-...+.-.+++.+.. +|.
T Consensus 41 lS~DgtF~N~~m~~~~~ai------------It~yGtY~l~SD~~Y~E~i~kni~~p~~~g~~n~L~fe~~~-----dn~ 103 (142)
T 4gzv_A 41 LSDDGRIVNFTIIPGADAI------------ITGYGTYKQLTDDSYKESIEKNIHLPMLDNQDNILEFEIKD-----NDY 103 (142)
T ss_dssp ECTTSEEEEEECCTTSCCE------------EEEEEEEEEEETTEEEEEEEEESSSGGGTTEEEEEEEEEET-----TTE
T ss_pred ECCCCcEEEEEEeCCCCcE------------EEEeEEEEecCCCeeeeeecccccCccccCCccEEEEEEcc-----CCE
Confidence 5799998777732211221 1457999998884333322 12222333356666665 377
Q ss_pred eEEeEeEeecCCCCCCCCC
Q 020795 244 MDLLSLVTSGMNDNEVNGH 262 (321)
Q Consensus 244 L~~~~~~s~~~~~~~~~~~ 262 (321)
|...-+..-+.+++|++.|
T Consensus 104 l~lsy~~~~~~~G~e~~~w 122 (142)
T 4gzv_A 104 LHLKYFIKSDLNGNELNTW 122 (142)
T ss_dssp EEEEEEEEECTTCCEEEEE
T ss_pred EEEEEEccCCCCCcccCCc
Confidence 7777778888888876554
No 12
>4i95_A Putative uncharacterized protein; lipocalin-like domain of PF13924 family, structural genomics center for structural genomics, JCSG; HET: MSE; 1.81A {Bacteroides eggerthii} PDB: 4gzv_A
Probab=21.86 E-value=3.3e+02 Score=22.59 Aligned_cols=68 Identities=18% Similarity=0.214 Sum_probs=40.1
Q ss_pred eEEEEEEEeCCEEEEEEe-----cCCCCceEEEEEEEEecCCCCccceeEEeEeEeecCCCCCCCCCCCccccccccccc
Q 020795 201 VFTGHYTLSEEKVEAAVL-----YPGLRPTVLRIRLRLRGTTAGANNRMDLLSLVTSGMNDNEVNGHDEDILGVVEGWQD 275 (321)
Q Consensus 201 ~~~G~~~l~~d~v~~~~~-----~~~~~~~~f~~~l~l~~~~~g~~nkL~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 275 (321)
...|.|++..|....+-+ .|-...+.-.|++.+.. +|.|.+.-|..-+++++|.+.| ..|-|--
T Consensus 61 t~~GtY~~~SD~~Y~E~IeKni~lp~l~g~~N~l~fE~~~-----dnlm~lky~~~~dl~G~e~~~w------~~E~W~R 129 (142)
T 4i95_A 61 TGYGTYRQISAAAYKESIEKNIHLPMLDNKDNILEFEMGA-----GGVMYLKYFIEKDLNGNELNTW------FHETWKR 129 (142)
T ss_dssp EEEEEEEEEETTEEEEEEEEESSSGGGTTEEEEEEEEECS-----TTEEEEEEEEEECTTSCEEEEE------EEEEEEE
T ss_pred EEeEEEEecCCcceeeeecccccCcccCCCccEEEEEEcc-----CCEEEEEEEeeccCCCCccCCc------eEEEEEe
Confidence 567999998884333322 22222232356666654 3666666677888888875553 2466766
Q ss_pred CCCC
Q 020795 276 DETH 279 (321)
Q Consensus 276 ~~~~ 279 (321)
.+.+
T Consensus 130 V~mP 133 (142)
T 4i95_A 130 VTMP 133 (142)
T ss_dssp CCCC
T ss_pred ccCC
Confidence 6544
No 13
>2k3u_B C5AR(P7-28S) peptide, chemotaxis inhibitory protein; chemotaxis inhibitory protein (chips), sulfated tyrosine; HET: TYS; NMR {Staphylococcus aureus subsp}
Probab=20.96 E-value=35 Score=19.97 Aligned_cols=17 Identities=35% Similarity=0.600 Sum_probs=13.1
Q ss_pred cccccccccCCCccccc
Q 020795 300 FEEVETSVLNLPVEKMD 316 (321)
Q Consensus 300 ~~~~~~~~~n~~~~~md 316 (321)
+++-+|-.||-||+|..
T Consensus 9 yddkdtldlntpvdk~~ 25 (26)
T 2k3u_B 9 YDDKDTLDLNTPVDKXX 25 (26)
T ss_dssp ECSSSCCBTTCCCCC--
T ss_pred cCCccccccCCcccccc
Confidence 57788899999999853
Done!