BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020796
(321 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BER|A Chain A, Y370g Active Site Mutant Of The Sialidase From
Micromonospora Viridifaciens In Complex With Beta-Neu5ac
(Sialic Acid)
Length = 601
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 86/209 (41%), Gaps = 36/209 (17%)
Query: 71 IIADEEPNVPMWNPVLFKLPSNGLLLFY--KIGQEVQKWS-----GCMKR----SYNKGV 119
I AD P+ P W F G+ L Y G+ +Q+++ G + S + G
Sbjct: 143 ITADITPD-PGWR-SRFAASGEGIQLRYGPHAGRLIQQYTIINAAGAFQAVSVYSDDHGR 200
Query: 120 TWSEREQLPPGILGPSKNKPILLENGLLLCGSSVESWNSWGSWMEVTVDAGRSWRKYGPI 179
TW E + G+ +NK + L +G +L +S +S S + V+ D G S YGP+
Sbjct: 201 TWRAGEAVGVGM---DENKTVELSDGRVLL-NSRDSARSGYRKVAVSTDGGHS---YGPV 253
Query: 180 YI------PNESLSVIQPVPFHTANRTLRVLMRSFNGIGRVCMSE-----SCDGGLTWSY 228
I P + S+I+ P A ++ N + S+ SCD G TW
Sbjct: 254 TIDRDLPDPTNNASIIRAFPDAPAGSARAKVLLFSNAASQTSRSQGTIRMSCDDGQTWPV 313
Query: 229 AKPTQLLNPN--SGIDGVKLKDGRLLLAY 255
+K + P SG L DG L Y
Sbjct: 314 SK---VFQPGSMSGSTLTALPDGTYGLLY 339
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 49/110 (44%), Gaps = 19/110 (17%)
Query: 216 MSESCDGGLTWSYAKPTQLLNPNSG--------IDGVKLK----DGRLLLAYNTV-SRGV 262
++ S DGGLTWS+ T + P+ G +G++L+ GRL+ Y + + G
Sbjct: 128 VATSTDGGLTWSHRTITADITPDPGWRSRFAASGEGIQLRYGPHAGRLIQQYTIINAAGA 187
Query: 263 LKV--ALSKDDGDSWHD----ALTLEENLAMEFSYPAVIQASDGSVHITY 306
+ S D G +W + ++EN +E S V+ S S Y
Sbjct: 188 FQAVSVYSDDHGRTWRAGEAVGVGMDENKTVELSDGRVLLNSRDSARSGY 237
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 10/83 (12%)
Query: 219 SCDGGLTWSYAKPTQLLNPNSGID---GVKLKDGRLLL-AYNTVSRGVLKVALSKDDGDS 274
S D G TW + + G+D V+L DGR+LL + ++ G KVA+S D G S
Sbjct: 195 SDDHGRTWRAGEAVGV-----GMDENKTVELSDGRVLLNSRDSARSGYRKVAVSTDGGHS 249
Query: 275 WHDALTLEENLAMEFSYPAVIQA 297
+ +T++ +L + ++I+A
Sbjct: 250 Y-GPVTIDRDLPDPTNNASIIRA 271
>pdb|1EUT|A Chain A, Sialidase, Large 68kd Form, Complexed With Galactose
pdb|1EUU|A Chain A, Sialidase Or Neuraminidase, Large 68kd Form
Length = 605
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 77/182 (42%), Gaps = 31/182 (17%)
Query: 71 IIADEEPNVPMWNPVLFKLPSNGLLLFY--KIGQEVQKWS-----GCMKR----SYNKGV 119
I AD P+ P W F G+ L Y G+ +Q+++ G + S + G
Sbjct: 147 ITADITPD-PGWR-SRFAASGEGIQLRYGPHAGRLIQQYTIINAAGAFQAVSVYSDDHGR 204
Query: 120 TWSEREQLPPGILGPSKNKPILLENGLLLCGSSVESWNSWGSWMEVTVDAGRSWRKYGPI 179
TW E + G+ +NK + L +G +L +S +S S + V+ D G S YGP+
Sbjct: 205 TWRAGEAVGVGM---DENKTVELSDGRVLL-NSRDSARSGYRKVAVSTDGGHS---YGPV 257
Query: 180 YI------PNESLSVIQPVPFHTANRTLRVLMRSFNGIGRVCMSE-----SCDGGLTWSY 228
I P + S+I+ P A ++ N + S+ SCD G TW
Sbjct: 258 TIDRDLPDPTNNASIIRAFPDAPAGSARAKVLLFSNAASQTSRSQGTIRMSCDDGQTWPV 317
Query: 229 AK 230
+K
Sbjct: 318 SK 319
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 49/110 (44%), Gaps = 19/110 (17%)
Query: 216 MSESCDGGLTWSYAKPTQLLNPNSG--------IDGVKLK----DGRLLLAYNTV-SRGV 262
++ S DGGLTWS+ T + P+ G +G++L+ GRL+ Y + + G
Sbjct: 132 VATSTDGGLTWSHRTITADITPDPGWRSRFAASGEGIQLRYGPHAGRLIQQYTIINAAGA 191
Query: 263 LKV--ALSKDDGDSWHD----ALTLEENLAMEFSYPAVIQASDGSVHITY 306
+ S D G +W + ++EN +E S V+ S S Y
Sbjct: 192 FQAVSVYSDDHGRTWRAGEAVGVGMDENKTVELSDGRVLLNSRDSARSGY 241
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 10/83 (12%)
Query: 219 SCDGGLTWSYAKPTQLLNPNSGID---GVKLKDGRLLL-AYNTVSRGVLKVALSKDDGDS 274
S D G TW + + G+D V+L DGR+LL + ++ G KVA+S D G S
Sbjct: 199 SDDHGRTWRAGEAVGV-----GMDENKTVELSDGRVLLNSRDSARSGYRKVAVSTDGGHS 253
Query: 275 WHDALTLEENLAMEFSYPAVIQA 297
+ +T++ +L + ++I+A
Sbjct: 254 Y-GPVTIDRDLPDPTNNASIIRA 275
>pdb|1WCQ|A Chain A, Mutagenesis Of The Nucleophilic Tyrosine In A Bacterial
Sialidase To Phenylalanine.
pdb|1WCQ|B Chain B, Mutagenesis Of The Nucleophilic Tyrosine In A Bacterial
Sialidase To Phenylalanine.
pdb|1WCQ|C Chain C, Mutagenesis Of The Nucleophilic Tyrosine In A Bacterial
Sialidase To Phenylalanine
Length = 601
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 77/182 (42%), Gaps = 31/182 (17%)
Query: 71 IIADEEPNVPMWNPVLFKLPSNGLLLFY--KIGQEVQKWS-----GCMKR----SYNKGV 119
I AD P+ P W F G+ L Y G+ +Q+++ G + S + G
Sbjct: 143 ITADITPD-PGWR-SRFAASGEGIQLRYGPHAGRLIQQYTIINAAGAFQAVSVYSDDHGR 200
Query: 120 TWSEREQLPPGILGPSKNKPILLENGLLLCGSSVESWNSWGSWMEVTVDAGRSWRKYGPI 179
TW E + G+ +NK + L +G +L +S +S S + V+ D G S YGP+
Sbjct: 201 TWRAGEAVGVGM---DENKTVELSDGRVLL-NSRDSARSGYRKVAVSTDGGHS---YGPV 253
Query: 180 YI------PNESLSVIQPVPFHTANRTLRVLMRSFNGIGRVCMSE-----SCDGGLTWSY 228
I P + S+I+ P A ++ N + S+ SCD G TW
Sbjct: 254 TIDRDLPDPTNNASIIRAFPDAPAGSARAKVLLFSNAASQTSRSQGTIRMSCDDGQTWPV 313
Query: 229 AK 230
+K
Sbjct: 314 SK 315
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 49/110 (44%), Gaps = 19/110 (17%)
Query: 216 MSESCDGGLTWSYAKPTQLLNPNSG--------IDGVKLK----DGRLLLAYNTV-SRGV 262
++ S DGGLTWS+ T + P+ G +G++L+ GRL+ Y + + G
Sbjct: 128 VATSTDGGLTWSHRTITADITPDPGWRSRFAASGEGIQLRYGPHAGRLIQQYTIINAAGA 187
Query: 263 LKV--ALSKDDGDSWHD----ALTLEENLAMEFSYPAVIQASDGSVHITY 306
+ S D G +W + ++EN +E S V+ S S Y
Sbjct: 188 FQAVSVYSDDHGRTWRAGEAVGVGMDENKTVELSDGRVLLNSRDSARSGY 237
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 10/83 (12%)
Query: 219 SCDGGLTWSYAKPTQLLNPNSGID---GVKLKDGRLLL-AYNTVSRGVLKVALSKDDGDS 274
S D G TW + + G+D V+L DGR+LL + ++ G KVA+S D G S
Sbjct: 195 SDDHGRTWRAGEAVGV-----GMDENKTVELSDGRVLLNSRDSARSGYRKVAVSTDGGHS 249
Query: 275 WHDALTLEENLAMEFSYPAVIQA 297
+ +T++ +L + ++I+A
Sbjct: 250 Y-GPVTIDRDLPDPTNNASIIRA 271
>pdb|1W8N|A Chain A, Contribution Of The Active Site Aspartic Acid To Catalysis
In The Bacterial Neuraminidase From Micromonospora
Viridifaciens.
pdb|1W8O|A Chain A, Contribution Of The Active Site Aspartic Acid To Catalysis
In The Bacterial Neuraminidase From Micromonospora
Viridifaciens
Length = 601
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 77/182 (42%), Gaps = 31/182 (17%)
Query: 71 IIADEEPNVPMWNPVLFKLPSNGLLLFY--KIGQEVQKWS-----GCMKR----SYNKGV 119
I AD P+ P W F G+ L Y G+ +Q+++ G + S + G
Sbjct: 143 ITADITPD-PGWR-SRFAASGEGIQLRYGPHAGRLIQQYTIINAAGAFQAVSVYSDDHGR 200
Query: 120 TWSEREQLPPGILGPSKNKPILLENGLLLCGSSVESWNSWGSWMEVTVDAGRSWRKYGPI 179
TW E + G+ +NK + L +G +L +S +S S + V+ D G S YGP+
Sbjct: 201 TWRAGEAVGVGM---DENKTVELSDGRVLL-NSRDSARSGYRKVAVSTDGGHS---YGPV 253
Query: 180 YI------PNESLSVIQPVPFHTANRTLRVLMRSFNGIGRVCMSE-----SCDGGLTWSY 228
I P + S+I+ P A ++ N + S+ SCD G TW
Sbjct: 254 TIDRDLPDPTNNASIIRAFPDAPAGSARAKVLLFSNAASQTSRSQGTIRMSCDDGQTWPV 313
Query: 229 AK 230
+K
Sbjct: 314 SK 315
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 49/110 (44%), Gaps = 19/110 (17%)
Query: 216 MSESCDGGLTWSYAKPTQLLNPNSG--------IDGVKLK----DGRLLLAYNTV-SRGV 262
++ S DGGLTWS+ T + P+ G +G++L+ GRL+ Y + + G
Sbjct: 128 VATSTDGGLTWSHRTITADITPDPGWRSRFAASGEGIQLRYGPHAGRLIQQYTIINAAGA 187
Query: 263 LKV--ALSKDDGDSWHD----ALTLEENLAMEFSYPAVIQASDGSVHITY 306
+ S D G +W + ++EN +E S V+ S S Y
Sbjct: 188 FQAVSVYSDDHGRTWRAGEAVGVGMDENKTVELSDGRVLLNSRDSARSGY 237
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 10/83 (12%)
Query: 219 SCDGGLTWSYAKPTQLLNPNSGID---GVKLKDGRLLL-AYNTVSRGVLKVALSKDDGDS 274
S D G TW + + G+D V+L DGR+LL + ++ G KVA+S D G S
Sbjct: 195 SDDHGRTWRAGEAVGV-----GMDENKTVELSDGRVLLNSRDSARSGYRKVAVSTDGGHS 249
Query: 275 WHDALTLEENLAMEFSYPAVIQA 297
+ +T++ +L + ++I+A
Sbjct: 250 Y-GPVTIDRDLPDPTNNASIIRA 271
>pdb|1EUR|A Chain A, Sialidase
pdb|1EUS|A Chain A, Sialidase Complexed With 2-Deoxy-2,3-Dehydro-N-
Acetylneuraminic Acid
Length = 365
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 77/182 (42%), Gaps = 31/182 (17%)
Query: 71 IIADEEPNVPMWNPVLFKLPSNGLLLFY--KIGQEVQKWS-----GCMKR----SYNKGV 119
I AD P+ P W F G+ L Y G+ +Q+++ G + S + G
Sbjct: 147 ITADITPD-PGWR-SRFAASGEGIQLRYGPHAGRLIQQYTIINAAGAFQAVSVYSDDHGR 204
Query: 120 TWSEREQLPPGILGPSKNKPILLENGLLLCGSSVESWNSWGSWMEVTVDAGRSWRKYGPI 179
TW E + G+ +NK + L +G +L +S +S S + V+ D G S YGP+
Sbjct: 205 TWRAGEAVGVGM---DENKTVELSDGRVLL-NSRDSARSGYRKVAVSTDGGHS---YGPV 257
Query: 180 YI------PNESLSVIQPVPFHTANRTLRVLMRSFNGIGRVCMSE-----SCDGGLTWSY 228
I P + S+I+ P A ++ N + S+ SCD G TW
Sbjct: 258 TIDRDLPDPTNNASIIRAFPDAPAGSARAKVLLFSNAASQTSRSQGTIRMSCDDGQTWPV 317
Query: 229 AK 230
+K
Sbjct: 318 SK 319
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 49/110 (44%), Gaps = 19/110 (17%)
Query: 216 MSESCDGGLTWSYAKPTQLLNPNSG--------IDGVKLK----DGRLLLAYNTV-SRGV 262
++ S DGGLTWS+ T + P+ G +G++L+ GRL+ Y + + G
Sbjct: 132 VATSTDGGLTWSHRTITADITPDPGWRSRFAASGEGIQLRYGPHAGRLIQQYTIINAAGA 191
Query: 263 LKV--ALSKDDGDSWHD----ALTLEENLAMEFSYPAVIQASDGSVHITY 306
+ S D G +W + ++EN +E S V+ S S Y
Sbjct: 192 FQAVSVYSDDHGRTWRAGEAVGVGMDENKTVELSDGRVLLNSRDSARSGY 241
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
Query: 244 VKLKDGRLLL-AYNTVSRGVLKVALSKDDGDSWHDALTLEENLAMEFSYPAVIQA 297
V+L DGR+LL + ++ G KVA+S D G S+ +T++ +L + ++I+A
Sbjct: 222 VELSDGRVLLNSRDSARSGYRKVAVSTDGGHSY-GPVTIDRDLPDPTNNASIIRA 275
>pdb|2BZD|A Chain A, Galactose Recognition By The Carbohydrate-Binding Module
Of A Bacterial Sialidase.
pdb|2BZD|B Chain B, Galactose Recognition By The Carbohydrate-Binding Module
Of A Bacterial Sialidase.
pdb|2BZD|C Chain C, Galactose Recognition By The Carbohydrate-Binding Module
Of A Bacterial Sialidase
Length = 601
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 76/182 (41%), Gaps = 31/182 (17%)
Query: 71 IIADEEPNVPMWNPVLFKLPSNGLLLFY--KIGQEVQKWS-----GCMKR----SYNKGV 119
I AD P+ P W F G+ L Y G+ +Q+++ G + S + G
Sbjct: 143 ITADITPD-PGWR-SRFAASGEGIQLRYGPHAGRLIQQYTIINAAGAFQAVSVYSDDHGR 200
Query: 120 TWSEREQLPPGILGPSKNKPILLENGLLLCGSSVESWNSWGSWMEVTVDAGRSWRKYGPI 179
TW E + G+ NK + L +G +L +S +S S + V+ D G S YGP+
Sbjct: 201 TWRAGEAVGVGM---DANKTVELSDGRVLL-NSRDSARSGYRKVAVSTDGGHS---YGPV 253
Query: 180 YI------PNESLSVIQPVPFHTANRTLRVLMRSFNGIGRVCMSE-----SCDGGLTWSY 228
I P + S+I+ P A ++ N + S+ SCD G TW
Sbjct: 254 TIDRDLPDPTNNASIIRAFPDAPAGSARAKVLLFSNAASQTSRSQGTIRMSCDDGQTWPV 313
Query: 229 AK 230
+K
Sbjct: 314 SK 315
Score = 31.6 bits (70), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 10/83 (12%)
Query: 219 SCDGGLTWSYAKPTQLLNPNSGIDG---VKLKDGRLLL-AYNTVSRGVLKVALSKDDGDS 274
S D G TW + + G+D V+L DGR+LL + ++ G KVA+S D G S
Sbjct: 195 SDDHGRTWRAGEAVGV-----GMDANKTVELSDGRVLLNSRDSARSGYRKVAVSTDGGHS 249
Query: 275 WHDALTLEENLAMEFSYPAVIQA 297
+ +T++ +L + ++I+A
Sbjct: 250 Y-GPVTIDRDLPDPTNNASIIRA 271
Score = 31.6 bits (70), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 19/102 (18%)
Query: 216 MSESCDGGLTWSYAKPTQLLNPNSG--------IDGVKLK----DGRLLLAYNTV-SRGV 262
++ S DGGLTWS+ T + P+ G +G++L+ GRL+ Y + + G
Sbjct: 128 VATSTDGGLTWSHRTITADITPDPGWRSRFAASGEGIQLRYGPHAGRLIQQYTIINAAGA 187
Query: 263 LKV--ALSKDDGDSWHDALTLEENLAMEFSYPAVIQASDGSV 302
+ S D G +W E + + ++ SDG V
Sbjct: 188 FQAVSVYSDDHGRTWRAG----EAVGVGMDANKTVELSDGRV 225
>pdb|2JKB|A Chain A, Crystal Structure Of Streptococcus Pneumoniae Nanb In
Complex With 2,7-Anhydro-Neu5ac
Length = 686
Score = 34.7 bits (78), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 51/122 (41%), Gaps = 9/122 (7%)
Query: 110 CMKRSYNKGVTWSEREQLPPGILGPSKNKPILLE-NGLLLCGSS---VESWNSWGSWMEV 165
M S N+G +W + + LPP LG N L GL L S+ ++ S +
Sbjct: 449 AMTTSQNRGESWEQFKLLPP-FLGEKHNGTYLCPGQGLALKSSNRLIFATYTSGELTYLI 507
Query: 166 TVDAGRSWRKYGPIYIPNESLSVIQPVPFHTANRTLRVLMRSFNGIGRVCMSESCDGGLT 225
+ D+G++W+K + + Q V +R R+ G++ S D G T
Sbjct: 508 SDDSGQTWKKSSASIPFKNATAEAQMVELRDG--VIRTFFRT--TTGKIAYMTSRDSGET 563
Query: 226 WS 227
WS
Sbjct: 564 WS 565
>pdb|2VW0|A Chain A, Crystal Structure Of The Nanb Sialidase From Streptococcus
Pneumoniae
pdb|2VW1|A Chain A, Crystal Structure Of The Nanb Sialidase From Streptococcus
Pneumoniae
pdb|2VW2|A Chain A, Crystal Structure Of The Nanb Sialidase From Streptococcus
Pneumoniae
pdb|4FOQ|A Chain A, Crystal Structure Of The Nanb Sialidase From Streptococcus
Pneumoniae In Complex With 2-Aminoethanesulfonic Acid
pdb|4FOV|A Chain A, Crystal Structure Of The Nanb Sialidase From Streptococcus
Pneumoniae In Complex With 3-Cyclohexyl-1-Propylsulfonic
Acid
pdb|4FOW|A Chain A, Crystal Structure Of The Nanb Sialidase From Streptococcus
Pneumoniae In Complex With 3-Ammoniopropane-1-Sulfonate
pdb|4FOY|A Chain A, Crystal Structure Of The Nanb Sialidase From Streptococcus
Pneumoniae In Complex With
2-(Benzylammonio)ethanesulfonate
pdb|4FP2|A Chain A, Crystal Structure Of The Nanb Sialidase From Streptococcus
Pneumoniae In Complex With
2[(Cyclohexylmethyl)ammonio]sulfonate
pdb|4FP3|A Chain A, Crystal Structure Of The Nanb Sialidase From Streptococcus
Pneumoniae In Complex With
2-[(Furan-2-Ylmethyl)ammonio]sulfonate
pdb|4FPC|A Chain A, Crystal Structure Of The Nanb Sialidase From Streptococcus
Pneumoniae In Complex With
2-[(4-Chlorobenzyl)ammonio]ethanesulfonate
pdb|4FPE|A Chain A, Crystal Structure Of The Nanb Sialidase From Streptococcus
Pneumoniae In Complex With
2-[(4-Methoxybenzyl)ammonio]ethanesulfonate
pdb|4FPF|A Chain A, Crystal Structure Of The Nanb Sialidase From Streptococcus
Pneumoniae In Complex With
2-[(3-Chlorobenzyl)ammonio]ethanesulfonate
pdb|4FPG|A Chain A, Crystal Structure Of The Nanb Sialidase From Streptococcus
Pneumoniae In Complex With
2-[(3-Hydroxybenzyl)ammonio]ethanesulfonate
pdb|4FPH|A Chain A, Crystal Structure Of The Nanb Sialidase From Streptococcus
Pneumoniae In Complex With
2-[(3-Fluorobenzyl)ammonio]ethanesulfonate
pdb|4FPJ|A Chain A, Crystal Structure Of The Nanb Sialidase From Streptococcus
Pneumoniae In Complex With
2-[(3-Methoxybenzyl)ammonio]ethanesulfonate
pdb|4FPK|A Chain A, Crystal Structure Of The Nanb Sialidase From Streptococcus
Pneumoniae In Complex With
2-[(3-Methylbenzyl)ammonio]ethanesulfonate
pdb|4FPL|A Chain A, Crystal Structure Of The Nanb Sialidase From Streptococcus
Pneumoniae In Complex With
2-[(3,4-Dichlorobenzyl)ammonio]ethanesulfonate
pdb|4FPO|B Chain B, Crystal Structure Of The Nanb Sialidase From Streptococcus
Pneumoniae In Complex With
2-[(3-Chloro-4-Methoxybenzyl)ammonio]ethanesulfonate
pdb|4FPY|A Chain A, Crystal Structure Of The Nanb Sialidase From Streptococcus
Pneumoniae In Complex With
2-[(3-Bromobenzyl)ammonio]ethanesulfonate
pdb|4FQ4|A Chain A, Crystal Structure Of The Nanb Sialidase From Streptococcus
Pneumoniae In Complex With
2-[(4-Fluoro-3-Methylbenzyl)ammonio]ethanesulfonate
Length = 697
Score = 34.3 bits (77), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 51/122 (41%), Gaps = 9/122 (7%)
Query: 110 CMKRSYNKGVTWSEREQLPPGILGPSKNKPILLE-NGLLLCGSS---VESWNSWGSWMEV 165
M S N+G +W + + LPP LG N L GL L S+ ++ S +
Sbjct: 460 AMTTSQNRGESWEQFKLLPP-FLGEKHNGTYLCPGQGLALKSSNRLIFATYTSGELTYLI 518
Query: 166 TVDAGRSWRKYGPIYIPNESLSVIQPVPFHTANRTLRVLMRSFNGIGRVCMSESCDGGLT 225
+ D+G++W+K + + Q V +R R+ G++ S D G T
Sbjct: 519 SDDSGQTWKKSSASIPFKNATAEAQMVELRDG--VIRTFFRT--TTGKIAYMTSRDSGET 574
Query: 226 WS 227
WS
Sbjct: 575 WS 576
>pdb|3IZO|F Chain F, Model Of The Fiber Tail And Its Interactions With The
Penton Base Of Human Adenovirus By Cryo-Electron
Microscopy
pdb|3IZO|G Chain G, Model Of The Fiber Tail And Its Interactions With The
Penton Base Of Human Adenovirus By Cryo-Electron
Microscopy
pdb|3IZO|H Chain H, Model Of The Fiber Tail And Its Interactions With The
Penton Base Of Human Adenovirus By Cryo-Electron
Microscopy
Length = 581
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 50/117 (42%), Gaps = 11/117 (9%)
Query: 125 EQLPPGILGPSKNKPILLENGLLLC----GSSVESWNSWGSWMEVTVDAGRSWRK----- 175
++ PPG+L ++P++ NG+L G S++ + S TV K
Sbjct: 40 QESPPGVLSLRLSEPLVTSNGMLALKMGNGLSLDEAGNLTSQNVTTVSPPLKKTKSNINL 99
Query: 176 --YGPIYIPNESLSVIQPVPFHTANRTLRVLMRSFNGIGRVCMSESCDGGLTWSYAK 230
P+ + +E+L+V P A TL + ++ + +S + G LT S K
Sbjct: 100 EISAPLTVTSEALTVAAAAPLMVAGNTLTMQSQAPLTVHDSKLSIATQGPLTVSEGK 156
>pdb|1SLI|A Chain A, Leech Intramolecular Trans-Sialidase Complexed With Dana
pdb|1SLL|A Chain A, Sialidase L From Leech Macrobdella Decora
pdb|2SLI|A Chain A, Leech Intramolecular Trans-Sialidase Complexed With 2,7-
Anhydro-Neu5ac, The Reaction Product
pdb|3SLI|A Chain A, Leech Intramolecular Trans-Sialidase Complexed With 2,7-
Anhydro-Neu5ac Prepared By Soaking With 3'-Sialyllactose
pdb|4SLI|A Chain A, Leech Intramolecular Trans-Sialidase Complexed With 2-
Propenyl-Neu5ac, An Inactive Substrate Analogue
Length = 679
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 65/275 (23%), Positives = 108/275 (39%), Gaps = 64/275 (23%)
Query: 68 QSPIIADEEPNVPMWNPVLFKLPSNGLLLFYKIGQEVQKWSGCMKRSYNKGVTWSERE-- 125
+S D N+ N V P+N L M+ S ++G +WS+ +
Sbjct: 402 ESKTDVDVNMNIFYKNSVFKAFPTNYL---------------AMRYSDDEGASWSDLDIV 446
Query: 126 -QLPPGI-----LGPSKNKPILL-EN-GLLLCGSSVESWNSWGSWMEVTVDAGRSWRKYG 177
P + +GP K I EN G LL +S G + D G +W
Sbjct: 447 SSFKPEVSKFLVVGPGIGKQISTGENAGRLLVPLYSKSSAELG--FMYSDDHGDNW---- 500
Query: 178 PIYIPNESLS---VIQPVPFHTANRTLRVLMRSFNGIGRVCMSE--SCDGGLTWSYAKPT 232
Y+ ++L+ + + +L+ +R+ G C++E S DGG TWS P
Sbjct: 501 -TYVEADNLTGGATAEAQIVEMPDGSLKTYLRT----GSNCIAEVTSIDGGETWSDRVPL 555
Query: 233 QLLNPNSGIDGVKLK--------DGR--LLL----AYNTVSRGVLKVALSKDDGDSWHDA 278
Q ++ S G +L DG+ ++L A N G + + L D G++ D
Sbjct: 556 QGISTTSY--GTQLSVINYSQPIDGKPAIILSSPNATNGRKNGKIWIGLVNDTGNTGIDK 613
Query: 279 LTLE-------ENLAMEFSYPAVIQASDGSVHITY 306
++E + M +SY + + DG V + Y
Sbjct: 614 YSVEWKYSYAVDTPQMGYSYSCLAELPDGQVGLLY 648
>pdb|1RPA|A Chain A, Three-Dimensional Structure Of Rat Acid Phosphatase In
Complex With L(+) Tartrate
pdb|1RPT|A Chain A, Crystal Structures Of Rat Acid Phosphatase Complexed With
The Transitions State Analogs Vanadate And Molybdate:
Implications For The Reaction Mechanism
Length = 342
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/50 (24%), Positives = 21/50 (42%)
Query: 4 DCGIKGLVAEEFTFPANSAPFKSCHASTIVEVDKGHFLVAYFGGSCEGAP 53
D + GL + P+ SCH + + + GHF+ Y+ + P
Sbjct: 258 DTTVSGLQMALDVYNGLLPPYASCHIMELYQDNGGHFVEMYYRNETQNEP 307
>pdb|3H6J|A Chain A, Crystal Structure Of A Putative Neuraminidase From
Pseudomonas Aeruginosa
Length = 438
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 44/105 (41%), Gaps = 10/105 (9%)
Query: 218 ESCDGGLTWSYAKPTQLLN-PNSGIDGVKLKDGRLLLAYNTVSR--GVLKVALSKDDGDS 274
ES DGG TW N P + + + DG +L S G L+ +S DDG +
Sbjct: 159 ESSDGGETWGEGSTIYSGNTPYNETSYLPVGDGVILAVARVGSGAGGALRQFISLDDGGT 218
Query: 275 WHDALTLEENLAMEFSYPAVIQASDGSVHITYTYNRTQIKHVVLL 319
W D + N+ + I + ++Y Y+ HVVLL
Sbjct: 219 WTD----QGNVTAQNGDSTDILVAP---SLSYIYSEGGTPHVVLL 256
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 8/79 (10%)
Query: 212 GRVCMSESCDGGLTWSYAKPTQLLNPNS----GIDGVKLKDGRLLLAYNTVSRGVLKVAL 267
GRV S+ +GG+ WS PT + + G + GR++ A G +KV +
Sbjct: 51 GRVVFSK-LEGGI-WS--APTIVAQAGGQDFRDVAGGTMPSGRIVAASTVYETGEVKVYV 106
Query: 268 SKDDGDSWHDALTLEENLA 286
S D G +W TL A
Sbjct: 107 SDDSGVTWVHKFTLARGGA 125
>pdb|2W38|A Chain A, Crystal Structure Of The Pseudaminidase From Pseudomonas
Aeruginosa
Length = 438
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 44/105 (41%), Gaps = 10/105 (9%)
Query: 218 ESCDGGLTWSYAKPTQLLN-PNSGIDGVKLKDGRLLLAYNTVSR--GVLKVALSKDDGDS 274
ES DGG TW N P + + + DG +L S G L+ +S DDG +
Sbjct: 159 ESSDGGETWGEGSTIYSGNTPYNETSYLPVGDGVILAVARVGSGAGGALRQFISLDDGGT 218
Query: 275 WHDALTLEENLAMEFSYPAVIQASDGSVHITYTYNRTQIKHVVLL 319
W D + N+ + I + ++Y Y+ HVVLL
Sbjct: 219 WTD----QGNVTAQNGDSTDILVAP---SLSYIYSEGGTPHVVLL 256
Score = 28.1 bits (61), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 8/79 (10%)
Query: 212 GRVCMSESCDGGLTWSYAKPTQLLNPNS----GIDGVKLKDGRLLLAYNTVSRGVLKVAL 267
GRV S+ +GG+ WS PT + + G + GR++ A G +KV +
Sbjct: 51 GRVVFSK-LEGGI-WS--APTIVAQAGGQDFRDVAGGTMPSGRIVAASTVYETGEVKVYV 106
Query: 268 SKDDGDSWHDALTLEENLA 286
S D G +W TL A
Sbjct: 107 SDDSGVTWVHKFTLARGGA 125
>pdb|2BIH|A Chain A, Crystal Structure Of The Molybdenum-containing Nitrate
Reducing Fragment Of Pichia Angusta Assimilatory Nitrate
Reductase
Length = 474
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 20/138 (14%)
Query: 163 MEVTVDAGRSWRKYGPIYIPNESLSVIQPVPFHTANRTLRVLMRSFNGIGRVCMSESCDG 222
+EV++D G+SW K I P + + A R F G+ VC SC
Sbjct: 330 IEVSLDKGKSW-KLADIDYPEDR--------YREAG-----YFRLFGGLVNVCDRMSCLC 375
Query: 223 GLTWSYAKPTQLLNPNSGIDGVKLKDGRLLLAYNTVSRGVLKVALSKDDGDSWHDALTLE 282
W P L + I ++ D R+++ T+ V + + W+ +
Sbjct: 376 WCFWKLKVPLSELARSKDI-LIRGMDERMMVQPRTMYWNVTSML-----NNWWYRVAIIR 429
Query: 283 ENLAMEFSYPAVIQASDG 300
E ++ F +P V G
Sbjct: 430 EGESLRFEHPVVANKPGG 447
>pdb|2BII|A Chain A, Crystal Structure Of Nitrate-Reducing Fragment Of
Assimilatory Nitrate Reductase From Pichia Angusta
pdb|2BII|B Chain B, Crystal Structure Of Nitrate-Reducing Fragment Of
Assimilatory Nitrate Reductase From Pichia Angusta
Length = 424
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 20/138 (14%)
Query: 163 MEVTVDAGRSWRKYGPIYIPNESLSVIQPVPFHTANRTLRVLMRSFNGIGRVCMSESCDG 222
+EV++D G+SW K I P + + A R F G+ VC SC
Sbjct: 280 IEVSLDKGKSW-KLADIDYPEDR--------YREAG-----YFRLFGGLVNVCDRMSCLC 325
Query: 223 GLTWSYAKPTQLLNPNSGIDGVKLKDGRLLLAYNTVSRGVLKVALSKDDGDSWHDALTLE 282
W P L + I ++ D R+++ T+ V + + W+ +
Sbjct: 326 WCFWKLKVPLSELARSKDI-LIRGMDERMMVQPRTMYWNVTSML-----NNWWYRVAIIR 379
Query: 283 ENLAMEFSYPAVIQASDG 300
E ++ F +P V G
Sbjct: 380 EGESLRFEHPVVANKPGG 397
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.433
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,043,746
Number of Sequences: 62578
Number of extensions: 493749
Number of successful extensions: 992
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 967
Number of HSP's gapped (non-prelim): 44
length of query: 321
length of database: 14,973,337
effective HSP length: 99
effective length of query: 222
effective length of database: 8,778,115
effective search space: 1948741530
effective search space used: 1948741530
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)