BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 020796
         (321 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q02834|NANH_MICVI Sialidase OS=Micromonospora viridifaciens GN=nedA PE=1 SV=1
          Length = 647

 Score = 39.7 bits (91), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 77/182 (42%), Gaps = 31/182 (17%)

Query: 71  IIADEEPNVPMWNPVLFKLPSNGLLLFY--KIGQEVQKWS-----GCMKR----SYNKGV 119
           I AD  P+ P W    F     G+ L Y    G+ +Q+++     G  +     S + G 
Sbjct: 189 ITADITPD-PGWR-SRFAASGEGIQLRYGPHAGRLIQQYTIINAAGAFQAVSVYSDDHGR 246

Query: 120 TWSEREQLPPGILGPSKNKPILLENGLLLCGSSVESWNSWGSWMEVTVDAGRSWRKYGPI 179
           TW   E +  G+    +NK + L +G +L  +S +S  S    + V+ D G S   YGP+
Sbjct: 247 TWRAGEAVGVGM---DENKTVELSDGRVLL-NSRDSARSGYRKVAVSTDGGHS---YGPV 299

Query: 180 YI------PNESLSVIQPVPFHTANRTLRVLMRSFNGIGRVCMSE-----SCDGGLTWSY 228
            I      P  + S+I+  P   A      ++   N   +   S+     SCD G TW  
Sbjct: 300 TIDRDLPDPTNNASIIRAFPDAPAGSARAKVLLFSNAASQTSRSQGTIRMSCDDGQTWPV 359

Query: 229 AK 230
           +K
Sbjct: 360 SK 361



 Score = 33.5 bits (75), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 49/110 (44%), Gaps = 19/110 (17%)

Query: 216 MSESCDGGLTWSYAKPTQLLNPNSG--------IDGVKLK----DGRLLLAYNTV-SRGV 262
           ++ S DGGLTWS+   T  + P+ G         +G++L+     GRL+  Y  + + G 
Sbjct: 174 VATSTDGGLTWSHRTITADITPDPGWRSRFAASGEGIQLRYGPHAGRLIQQYTIINAAGA 233

Query: 263 LKV--ALSKDDGDSWHD----ALTLEENLAMEFSYPAVIQASDGSVHITY 306
            +     S D G +W       + ++EN  +E S   V+  S  S    Y
Sbjct: 234 FQAVSVYSDDHGRTWRAGEAVGVGMDENKTVELSDGRVLLNSRDSARSGY 283


>sp|Q54727|NANB_STRPN Sialidase B OS=Streptococcus pneumoniae serotype 4 (strain ATCC
           BAA-334 / TIGR4) GN=nanB PE=1 SV=2
          Length = 697

 Score = 34.3 bits (77), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 32/122 (26%), Positives = 51/122 (41%), Gaps = 9/122 (7%)

Query: 110 CMKRSYNKGVTWSEREQLPPGILGPSKNKPILLE-NGLLLCGSS---VESWNSWGSWMEV 165
            M  S N+G +W + + LPP  LG   N   L    GL L  S+     ++ S      +
Sbjct: 460 AMTTSQNRGESWEQFKLLPP-FLGEKHNGTYLCPGQGLALKSSNRLIFATYTSGELTYLI 518

Query: 166 TVDAGRSWRKYGPIYIPNESLSVIQPVPFHTANRTLRVLMRSFNGIGRVCMSESCDGGLT 225
           + D+G++W+K         + +  Q V        +R   R+    G++    S D G T
Sbjct: 519 SDDSGQTWKKSSASIPFKNATAEAQMVELRDG--VIRTFFRT--TTGKIAYMTSRDSGET 574

Query: 226 WS 227
           WS
Sbjct: 575 WS 576


>sp|Q28379|MX1_HORSE Interferon-induced GTP-binding protein Mx1 OS=Equus caballus GN=MX1
           PE=2 SV=1
          Length = 660

 Score = 33.1 bits (74), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 14/27 (51%), Positives = 18/27 (66%)

Query: 92  NGLLLFYKIGQEVQKWSGCMKRSYNKG 118
           N   LF KI QE QKWSG ++ ++ KG
Sbjct: 399 NDTRLFNKIRQEFQKWSGVIENNFRKG 425


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.318    0.136    0.433 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 133,201,204
Number of Sequences: 539616
Number of extensions: 5851474
Number of successful extensions: 10570
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 10557
Number of HSP's gapped (non-prelim): 21
length of query: 321
length of database: 191,569,459
effective HSP length: 117
effective length of query: 204
effective length of database: 128,434,387
effective search space: 26200614948
effective search space used: 26200614948
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)