Query 020796
Match_columns 321
No_of_seqs 157 out of 2023
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 05:13:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020796.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020796hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13088 BNR_2: BNR repeat-lik 100.0 4.9E-41 1.1E-45 296.2 19.4 263 38-304 1-275 (275)
2 cd00260 Sialidase Sialidases o 100.0 1E-31 2.2E-36 244.9 32.6 298 15-319 2-351 (351)
3 COG4692 Predicted neuraminidas 99.9 8.1E-27 1.8E-31 195.6 16.8 298 13-320 20-373 (381)
4 PF13088 BNR_2: BNR repeat-lik 99.9 3.5E-20 7.6E-25 163.3 17.4 233 12-253 34-275 (275)
5 cd00260 Sialidase Sialidases o 99.7 1.1E-15 2.4E-20 139.3 23.5 204 79-283 14-243 (351)
6 PF13859 BNR_3: BNR repeat-lik 99.7 1.9E-15 4.1E-20 133.3 23.5 267 29-307 1-310 (310)
7 PF14870 PSII_BNR: Photosynthe 99.4 3.9E-11 8.4E-16 105.5 19.5 216 37-283 16-273 (302)
8 PRK13684 Ycf48-like protein; P 99.4 3.1E-10 6.8E-15 102.5 23.6 144 108-279 151-296 (334)
9 PLN00033 photosystem II stabil 99.3 9.6E-10 2.1E-14 100.7 23.7 206 38-276 88-314 (398)
10 PLN00033 photosystem II stabil 99.3 3E-09 6.4E-14 97.5 23.7 189 56-279 156-364 (398)
11 PRK13684 Ycf48-like protein; P 99.2 5E-09 1.1E-13 94.7 21.1 144 108-279 108-252 (334)
12 PF14870 PSII_BNR: Photosynthe 99.0 5.4E-09 1.2E-13 92.0 12.2 143 109-279 37-182 (302)
13 COG4409 NanH Neuraminidase (si 99.0 1.1E-07 2.5E-12 90.1 20.2 142 162-308 546-701 (728)
14 PTZ00334 trans-sialidase; Prov 98.9 7.9E-08 1.7E-12 93.4 16.8 172 137-320 263-467 (780)
15 PF13859 BNR_3: BNR repeat-lik 98.8 2.5E-07 5.4E-12 82.0 16.7 192 84-278 2-212 (310)
16 cd08984 GH43_5 Glycosyl hydrol 98.8 2.8E-06 6E-11 75.6 21.5 217 81-308 11-255 (294)
17 COG4447 Uncharacterized protei 98.6 1.5E-06 3.2E-11 73.7 14.8 234 13-284 63-302 (339)
18 cd08994 GH43_like_2 Glycosyl h 98.6 5.2E-05 1.1E-09 67.3 24.8 203 25-230 11-251 (291)
19 cd08984 GH43_5 Glycosyl hydrol 98.5 4.4E-05 9.6E-10 67.9 22.5 220 24-256 8-254 (294)
20 cd08772 GH43_62_32_68 Glycosyl 98.5 0.00011 2.3E-09 64.7 22.7 222 83-308 2-262 (286)
21 cd08994 GH43_like_2 Glycosyl h 98.4 0.00014 3.1E-09 64.5 22.9 228 77-306 9-289 (291)
22 cd08995 GH32_Aec43_like Glycos 98.4 0.00034 7.5E-09 61.7 24.6 193 30-228 3-220 (280)
23 cd08772 GH43_62_32_68 Glycosyl 98.4 0.00041 8.8E-09 61.0 25.0 196 29-229 2-224 (286)
24 cd08993 GH43_DUF377 Glycosyl h 98.4 0.00038 8.2E-09 61.0 23.4 141 83-231 2-156 (268)
25 cd08996 GH32_B_Fructosidase Gl 98.3 0.00041 9E-09 61.7 22.9 175 32-208 9-201 (298)
26 cd08979 GH_J Glycosyl hydrolas 98.3 0.00064 1.4E-08 59.6 22.5 175 28-208 7-209 (276)
27 smart00602 VPS10 VPS10 domain. 98.2 0.0012 2.6E-08 64.7 25.6 207 61-280 197-433 (612)
28 cd08979 GH_J Glycosyl hydrolas 98.1 0.0024 5.1E-08 55.9 23.5 163 92-258 14-209 (276)
29 cd08978 GH_F Glycosyl hydrolas 98.1 0.0027 6E-08 55.3 23.1 223 83-310 2-254 (271)
30 cd08999 GH43_ABN_2 Glycosyl hy 98.0 0.0052 1.1E-07 54.3 23.4 223 80-308 7-261 (287)
31 cd08996 GH32_B_Fructosidase Gl 98.0 0.0023 5E-08 56.9 21.1 214 90-310 12-262 (298)
32 cd08993 GH43_DUF377 Glycosyl h 97.9 0.00086 1.9E-08 58.8 16.9 137 140-281 5-157 (268)
33 cd08999 GH43_ABN_2 Glycosyl hy 97.9 0.015 3.4E-07 51.3 24.8 223 26-256 7-260 (287)
34 COG4447 Uncharacterized protei 97.8 8.2E-05 1.8E-09 63.3 8.1 142 108-279 63-207 (339)
35 PF04616 Glyco_hydro_43: Glyco 97.8 0.0033 7.2E-08 55.4 18.7 223 80-309 9-260 (286)
36 cd08995 GH32_Aec43_like Glycos 97.8 0.01 2.2E-07 52.3 21.2 218 83-309 2-251 (280)
37 PF04616 Glyco_hydro_43: Glyco 97.8 0.0063 1.4E-07 53.6 19.6 225 25-256 8-258 (286)
38 cd08978 GH_F Glycosyl hydrolas 97.8 0.023 4.9E-07 49.5 24.3 221 28-256 1-251 (271)
39 cd08990 GH43_AXH_like Glycosyl 97.7 0.023 4.9E-07 50.0 22.7 220 83-309 2-247 (274)
40 TIGR01322 scrB_fam sucrose-6-p 97.7 0.018 3.9E-07 54.4 22.7 175 29-206 28-223 (445)
41 PF00251 Glyco_hydro_32N: Glyc 97.7 0.0062 1.3E-07 54.6 18.6 169 28-199 10-195 (308)
42 smart00602 VPS10 VPS10 domain. 97.7 0.0072 1.6E-07 59.3 20.5 59 110-177 56-116 (612)
43 cd08983 GH43_4 Glycosyl hydrol 97.7 0.032 7E-07 49.1 22.5 200 24-228 15-227 (276)
44 COG4692 Predicted neuraminidas 97.6 0.00032 6.9E-09 60.4 8.3 193 84-279 36-242 (381)
45 smart00640 Glyco_32 Glycosyl h 97.6 0.032 6.9E-07 52.6 22.6 199 27-228 9-235 (437)
46 cd08983 GH43_4 Glycosyl hydrol 97.5 0.053 1.1E-06 47.7 22.0 189 78-271 15-220 (276)
47 PF02012 BNR: BNR/Asp-box repe 97.5 8.1E-05 1.8E-09 31.9 1.7 12 164-175 1-12 (12)
48 cd08990 GH43_AXH_like Glycosyl 97.5 0.066 1.4E-06 47.0 23.1 216 30-256 3-245 (274)
49 cd08981 GH43_2 Glycosyl hydrol 97.4 0.088 1.9E-06 46.7 26.9 245 26-273 5-287 (291)
50 PF12217 End_beta_propel: Cata 97.3 0.093 2E-06 44.7 25.3 210 13-229 1-232 (367)
51 PF02012 BNR: BNR/Asp-box repe 97.3 0.00014 2.9E-09 31.2 1.0 12 112-123 1-12 (12)
52 cd08998 GH43_ABN_1 Glycosyl hy 97.2 0.14 3.1E-06 45.2 23.1 188 27-228 1-218 (288)
53 PF00251 Glyco_hydro_32N: Glyc 97.0 0.056 1.2E-06 48.4 16.0 221 83-310 11-273 (308)
54 COG4409 NanH Neuraminidase (si 97.0 0.079 1.7E-06 51.4 17.4 43 83-125 277-324 (728)
55 PF04041 DUF377: Domain of unk 96.9 0.26 5.6E-06 44.2 19.7 165 80-256 31-222 (312)
56 cd08991 GH43_bXyl_2 Glycosyl h 96.9 0.3 6.5E-06 43.3 23.5 193 29-229 2-227 (294)
57 cd08991 GH43_bXyl_2 Glycosyl h 96.8 0.24 5.1E-06 43.9 18.4 180 25-206 53-263 (294)
58 smart00640 Glyco_32 Glycosyl h 96.7 0.3 6.6E-06 46.0 19.6 146 81-231 9-178 (437)
59 cd08985 GH43_6 Glycosyl hydrol 96.7 0.37 8E-06 42.1 18.7 146 25-177 63-213 (265)
60 cd08980 GH43_1 Glycosyl hydrol 96.7 0.36 7.7E-06 42.7 18.8 180 25-207 53-259 (288)
61 cd09000 GH43_XYL_1 Glycosyl hy 96.6 0.49 1.1E-05 41.8 24.2 219 26-256 7-256 (288)
62 cd09004 GH43_bXyl Glycosyl hyd 96.6 0.48 1E-05 41.5 25.4 217 81-308 8-246 (275)
63 cd08998 GH43_ABN_1 Glycosyl hy 96.3 0.69 1.5E-05 40.8 23.7 216 82-308 2-262 (288)
64 cd09000 GH43_XYL_1 Glycosyl hy 96.3 0.69 1.5E-05 40.8 18.8 175 25-206 66-256 (288)
65 COG1621 SacC Beta-fructosidase 96.2 0.48 1E-05 44.8 17.2 165 32-199 47-229 (486)
66 cd09001 GH43_XYL_2 Glycosyl hy 96.2 0.47 1E-05 41.5 16.4 163 26-205 75-243 (269)
67 cd09004 GH43_bXyl Glycosyl hyd 96.2 0.79 1.7E-05 40.1 24.2 188 27-229 8-211 (275)
68 PTZ00334 trans-sialidase; Prov 95.9 0.054 1.2E-06 53.7 9.8 83 88-176 267-349 (780)
69 cd08986 GH43_7 Glycosyl hydrol 95.9 0.89 1.9E-05 39.8 16.7 166 25-207 77-255 (269)
70 TIGR01322 scrB_fam sucrose-6-p 95.8 0.65 1.4E-05 43.9 16.2 137 163-306 59-222 (445)
71 COG3507 XynB Beta-xylosidase [ 95.4 0.37 8.1E-06 45.6 12.6 72 25-100 89-164 (549)
72 PF04041 DUF377: Domain of unk 95.3 0.22 4.9E-06 44.6 10.8 136 137-279 34-188 (312)
73 cd08992 GH43_like_1 Glycosyl h 95.3 2.3 4.9E-05 38.7 23.0 196 54-283 78-293 (349)
74 cd09003 GH43_AXH_1 Glycosyl hy 95.1 2.4 5.3E-05 37.9 18.5 143 26-176 77-244 (311)
75 cd09001 GH43_XYL_2 Glycosyl hy 94.7 2.7 5.9E-05 36.7 22.0 210 26-255 10-243 (269)
76 cd08986 GH43_7 Glycosyl hydrol 94.4 3.3 7.1E-05 36.2 21.8 218 27-256 2-254 (269)
77 cd08989 GH43_XYL Glycosyl hydr 94.4 3.3 7.1E-05 36.2 17.5 170 26-207 67-249 (269)
78 PF13810 DUF4185: Domain of un 94.3 3.7 8.1E-05 36.8 23.3 124 160-283 128-277 (316)
79 cd08997 GH68 Glycosyl hydrolas 93.6 3.8 8.2E-05 37.3 14.6 86 15-100 59-172 (349)
80 cd08981 GH43_2 Glycosyl hydrol 93.2 5.8 0.00013 35.1 23.2 223 81-308 6-267 (291)
81 COG1621 SacC Beta-fructosidase 93.0 8.6 0.00019 36.6 18.0 214 91-309 51-301 (486)
82 cd08982 GH43_3 Glycosyl hydrol 92.8 6.8 0.00015 34.8 20.4 204 82-307 4-238 (295)
83 PF12217 End_beta_propel: Cata 92.5 6.4 0.00014 33.9 16.7 163 143-308 24-209 (367)
84 COG4946 Uncharacterized protei 92.0 11 0.00023 35.4 15.1 38 140-177 178-222 (668)
85 cd08980 GH43_1 Glycosyl hydrol 91.8 8.6 0.00019 33.8 23.0 216 83-308 2-259 (288)
86 cd09002 GH43_XYL_3 Glycosyl hy 91.3 9.8 0.00021 33.5 21.6 224 65-308 4-253 (280)
87 cd09002 GH43_XYL_3 Glycosyl hy 90.3 12 0.00026 32.9 21.7 116 27-150 15-131 (280)
88 cd08989 GH43_XYL Glycosyl hydr 89.0 15 0.00032 32.1 22.3 216 26-256 7-248 (269)
89 PF13810 DUF4185: Domain of un 87.8 20 0.00044 32.2 18.2 36 90-125 103-145 (316)
90 PF03664 Glyco_hydro_62: Glyco 86.7 19 0.00041 30.8 14.3 85 81-179 76-163 (271)
91 cd08987 GH62 Glycosyl hydrolas 86.7 6.3 0.00014 34.7 9.1 64 27-99 78-150 (303)
92 PF07250 Glyoxal_oxid_N: Glyox 86.4 5.2 0.00011 34.4 8.4 112 194-308 73-189 (243)
93 cd08985 GH43_6 Glycosyl hydrol 86.3 22 0.00047 31.0 23.7 197 26-230 2-213 (265)
94 cd08992 GH43_like_1 Glycosyl h 85.8 28 0.0006 31.8 17.4 115 160-277 80-240 (349)
95 KOG0228 Beta-fructofuranosidas 85.1 28 0.00062 33.1 12.9 138 37-177 69-228 (571)
96 cd08997 GH68 Glycosyl hydrolas 84.3 33 0.00071 31.3 21.5 48 54-101 40-91 (349)
97 KOG3511 Sortilin and related r 83.8 51 0.0011 33.1 15.3 98 11-127 180-279 (720)
98 cd08988 GH43_ABN Glycosyl hydr 81.6 36 0.00078 29.8 24.3 186 28-227 1-218 (279)
99 PF03404 Mo-co_dimer: Mo-co ox 81.4 19 0.00042 27.7 9.0 48 160-208 43-100 (131)
100 PF03664 Glyco_hydro_62: Glyco 81.2 28 0.00061 29.8 10.3 44 27-75 76-123 (271)
101 cd08987 GH62 Glycosyl hydrolas 78.2 49 0.0011 29.3 18.6 134 80-229 77-230 (303)
102 KOG3511 Sortilin and related r 77.4 6.3 0.00014 39.2 6.3 60 110-177 216-277 (720)
103 cd08988 GH43_ABN Glycosyl hydr 69.0 79 0.0017 27.6 24.0 224 83-318 2-274 (279)
104 cd09003 GH43_AXH_1 Glycosyl hy 68.9 86 0.0019 28.0 23.3 193 26-228 8-243 (311)
105 PF07250 Glyoxal_oxid_N: Glyox 66.1 19 0.00042 30.9 6.0 58 244-305 73-134 (243)
106 COG4946 Uncharacterized protei 61.1 97 0.0021 29.4 9.8 25 106-130 203-227 (668)
107 cd08982 GH43_3 Glycosyl hydrol 58.3 1.3E+02 0.0029 26.6 23.4 104 26-150 2-107 (295)
108 COG3507 XynB Beta-xylosidase [ 57.6 1.8E+02 0.0039 28.2 11.2 115 190-309 32-165 (549)
109 PF14517 Tachylectin: Tachylec 56.6 31 0.00068 29.3 5.6 129 167-305 62-194 (229)
110 cd02110 SO_family_Moco_dimer S 54.7 1E+02 0.0022 27.7 9.0 18 160-177 238-255 (317)
111 cd02113 bact_SoxC_Moco bacteri 50.3 1.2E+02 0.0026 27.4 8.6 18 160-177 240-257 (326)
112 COG2152 Predicted glycosylase 48.1 2E+02 0.0044 25.6 12.5 115 160-279 62-189 (314)
113 COG2706 3-carboxymuconate cycl 48.1 2.2E+02 0.0047 25.9 25.9 173 138-321 93-276 (346)
114 cd02114 bact_SorA_Moco sulfite 47.0 1.6E+02 0.0035 27.1 9.1 18 160-177 290-307 (367)
115 COG2152 Predicted glycosylase 44.6 2.3E+02 0.005 25.3 19.5 143 80-230 30-189 (314)
116 PF03404 Mo-co_dimer: Mo-co ox 39.3 1.6E+02 0.0035 22.5 6.7 26 259-284 40-65 (131)
117 PLN00177 sulfite oxidase; Prov 38.3 1E+02 0.0022 28.7 6.4 18 160-177 298-315 (393)
118 PHA02579 7 baseplate wedge sub 37.4 53 0.0012 32.9 4.5 53 196-254 194-248 (1030)
119 PF10282 Lactonase: Lactonase, 37.0 3.2E+02 0.0068 24.6 26.6 166 139-319 149-322 (345)
120 cd02111 eukary_SO_Moco molybdo 35.3 1.1E+02 0.0023 28.2 6.0 18 160-177 278-295 (365)
121 PF07494 Reg_prop: Two compone 34.0 47 0.001 16.9 2.1 13 85-97 9-21 (24)
122 KOG0228 Beta-fructofuranosidas 33.1 4.6E+02 0.0099 25.4 12.3 138 90-230 68-228 (571)
123 PF08450 SGL: SMP-30/Gluconola 30.5 3.3E+02 0.0071 22.9 15.4 107 192-307 90-202 (246)
124 PF10282 Lactonase: Lactonase, 30.3 4.1E+02 0.0088 23.9 24.8 124 191-318 147-274 (345)
125 PF07995 GSDH: Glucose / Sorbo 28.8 2.4E+02 0.0053 25.4 7.2 109 192-305 6-130 (331)
126 KOG1843 Uncharacterized conser 27.3 1.2E+02 0.0027 28.0 4.8 23 55-77 67-89 (473)
127 PF08950 DUF1861: Protein of u 25.8 4.6E+02 0.01 23.1 7.8 80 11-96 12-92 (298)
128 cd02112 eukary_NR_Moco molybdo 22.7 62 0.0013 30.0 2.2 15 161-175 303-317 (386)
129 PF08268 FBA_3: F-box associat 22.2 3.4E+02 0.0074 20.3 7.6 71 25-97 43-118 (129)
130 COG2930 Uncharacterized conser 21.3 58 0.0013 26.8 1.5 20 55-74 75-94 (227)
No 1
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=100.00 E-value=4.9e-41 Score=296.16 Aligned_cols=263 Identities=36% Similarity=0.608 Sum_probs=211.5
Q ss_pred CcEEEEEecCCCCCCCCcEEEEEEeCC-C-CcCCcEEccCCC--CCCCCCeEEEEeCCCcEEEEEEeccccCCc---eeE
Q 020796 38 GHFLVAYFGGSCEGAPDVKIWLQTFKD-G-RWQSPIIADEEP--NVPMWNPVLFKLPSNGLLLFYKIGQEVQKW---SGC 110 (321)
Q Consensus 38 g~l~~~~~~~~~~g~~~~~i~~s~s~~-G-tWs~~~~~~~~~--~~~~~~p~l~~~~~G~l~l~~~~~~~~~~~---~~~ 110 (321)
|+|+|+|+++..++..++.|++|+|+| | ||++|+.|...+ ...+.+|+++.+++|+|+|+|..+.....+ ...
T Consensus 1 G~l~a~~~~~~~~~~~d~~i~~S~s~D~G~tWs~~~~v~~~~~~~~~~~~p~~~~~~~g~l~l~~~~~~~~~~~~~~~~~ 80 (275)
T PF13088_consen 1 GRLLAVWEGGSDEGAIDIVIRRSRSTDGGKTWSEPRIVADGPKPGRRYGNPSLVVDPDGRLWLFYSAGSSGGGWSGSRIY 80 (275)
T ss_dssp SEEEEEEEESSCSCCEEEEEEEECCCCCTTEEEEEEEEETSTBTTCEEEEEEEEEETTSEEEEEEEEEETTESCCTCEEE
T ss_pred CeEEEEEECCcccCCCCEEEEEEEeeCCCCeeCCCEEEeeccccCCcccCcEEEEeCCCCEEEEEEEccCCCCCCceeEE
Confidence 789999999887887788888887776 5 999999887655 567889999988999999999654333222 233
Q ss_pred EEEecCCCCCCCCCccCCCC----CCCCCCCccEEccCCeEEEeeecccCCCCcEEEEEECCCCceeEEeeceecCCCCc
Q 020796 111 MKRSYNKGVTWSEREQLPPG----ILGPSKNKPILLENGLLLCGSSVESWNSWGSWMEVTVDAGRSWRKYGPIYIPNESL 186 (321)
Q Consensus 111 ~~~S~D~G~TWs~~~~l~~~----~~g~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~S~D~G~tW~~~~~~~~~~~~~ 186 (321)
+.+|+|+|+||+++..|..+ ..++..++++++++|+++++.+.+........+++|+|+|+||+...++. ...
T Consensus 81 ~~~S~D~G~TWs~~~~l~~~~~~~~~~~~~~~~i~~~~G~l~~~~~~~~~~~~~~~~~~S~D~G~tW~~~~~~~---~~~ 157 (275)
T PF13088_consen 81 YSRSTDGGKTWSEPTDLPPGWFGNFSGPGRGPPIQLPDGRLIAPYYHESGGSFSAFVYYSDDGGKTWSSGSPIP---DGQ 157 (275)
T ss_dssp EEEESSTTSS-EEEEEEHHHCCCSCEECSEEEEEEECTTEEEEEEEEESSCEEEEEEEEESSTTSSEEEEEECE---CSE
T ss_pred EEEECCCCCCCCCccccccccccceeccceeeeeEecCCCEEEEEeeccccCcceEEEEeCCCCceeecccccc---ccC
Confidence 58999999999999876543 22334455678889999999776633345778999999999999886442 223
Q ss_pred ceeeeeEEEcCCCeEEEEEeecCCCCcEEEEEeccCCcCCCCCccCCCCCCCCceeEEEcCCCcEEEEEeC-CCCCeEEE
Q 020796 187 SVIQPVPFHTANRTLRVLMRSFNGIGRVCMSESCDGGLTWSYAKPTQLLNPNSGIDGVKLKDGRLLLAYNT-VSRGVLKV 265 (321)
Q Consensus 187 ~~~~~~~~~~~~G~l~~~~r~~~~~~~~~~~~S~D~G~tWs~~~~~~~~~~~~~~~~~~~~~g~~~lv~~~-~~r~~l~~ 265 (321)
+++|+.++++++|+|++++|.. ....+++++|.|+|+||+++..+.++.+.+.+.++.+++|+++|+++. ..|.++.+
T Consensus 158 ~~~e~~~~~~~dG~l~~~~R~~-~~~~~~~~~S~D~G~TWs~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~l~l 236 (275)
T PF13088_consen 158 GECEPSIVELPDGRLLAVFRTE-GNDDIYISRSTDGGRTWSPPQPTNLPNPNSSISLVRLSDGRLLLVYNNPDGRSNLSL 236 (275)
T ss_dssp EEEEEEEEEETTSEEEEEEEEC-SSTEEEEEEESSTTSS-EEEEEEECSSCCEEEEEEECTTSEEEEEEECSSTSEEEEE
T ss_pred CcceeEEEECCCCcEEEEEEcc-CCCcEEEEEECCCCCcCCCceecccCcccCCceEEEcCCCCEEEEEECCCCCCceEE
Confidence 6789999999999999999996 335889999999999999988777888777777788999999999985 36889999
Q ss_pred EEEcCCCCCCCcceeecccCCCceeceEEEEccCCeEEE
Q 020796 266 ALSKDDGDSWHDALTLEENLAMEFSYPAVIQASDGSVHI 304 (321)
Q Consensus 266 ~~S~D~G~tW~~~~~l~~~~~~~~~yp~~~~~~dg~l~v 304 (321)
++|.|+|++|.++..|.+++...++||.+++.+||.|||
T Consensus 237 ~~S~D~g~tW~~~~~i~~~~~~~~~Y~~~~~~~dg~l~i 275 (275)
T PF13088_consen 237 YVSEDGGKTWSRPKTIDDGPNGDSGYPSLTQLPDGKLYI 275 (275)
T ss_dssp EEECTTCEEEEEEEEEEEEE-CCEEEEEEEEEETTEEEE
T ss_pred EEEeCCCCcCCccEEEeCCCCCcEECCeeEEeCCCcCCC
Confidence 999999999999999988766679999999999999986
No 2
>cd00260 Sialidase Sialidases or neuraminidases function to bind and hydrolyze terminal sialic acid residues from various glycoconjugates as well as playing roles in pathogenesis, bacterial nutrition and cellular interactions. They have a six-bladed, beta-propeller fold with the non-viral sialidases containing 2-5 Asp-box motifs (most commonly Ser/Thr-X-Asp-[X]-Gly-X-Thr- Trp/Phe). This CD includes eubacterial, eukaryotic, and viral sialidases.
Probab=100.00 E-value=1e-31 Score=244.87 Aligned_cols=298 Identities=18% Similarity=0.231 Sum_probs=216.5
Q ss_pred EEecCCCC--CCCccccceEEEecCCcEEEEEecCCC---CCCC-CcEEEEEEeCC-C-CcCCcEEccCCCC--CCCCCe
Q 020796 15 FTFPANSA--PFKSCHASTIVEVDKGHFLVAYFGGSC---EGAP-DVKIWLQTFKD-G-RWQSPIIADEEPN--VPMWNP 84 (321)
Q Consensus 15 ~~f~~~~~--~~~~~~~p~l~~~~~g~l~~~~~~~~~---~g~~-~~~i~~s~s~~-G-tWs~~~~~~~~~~--~~~~~p 84 (321)
+||.++.. .+.++|+|+|+.+++ .|+++. +.+. .... .+.|++++|.| | ||++++.+..... ....+|
T Consensus 2 ~i~~~~~~~~~~~~~RiPsl~~~~~-~lla~~-e~r~~~~~D~~~~~~iv~~~S~D~G~tW~~~~~i~~~~~~~~~~~~p 79 (351)
T cd00260 2 DIFVRGGSDGGVGSFRIPSLVCTPG-TLLAFA-DARYGGCSDRSNAIDIVARRSTDGGKTWSPSTVISDGDGKSSRVKDP 79 (351)
T ss_pred ceEecCCCCCceEEEecceEEEECC-EEEEEE-EEEEcCCCCCCcccceeEEEeccCCCcccccEEehhcCCCCCcEEcc
Confidence 68899866 889999999999997 666654 4332 1122 56688888876 5 9999988765433 457789
Q ss_pred EEEEeCCCcEEEEEEecccc----------CCceeEEEEecCCCCCCCCCccCCCCCCC-------CCCCccEEccCCeE
Q 020796 85 VLFKLPSNGLLLFYKIGQEV----------QKWSGCMKRSYNKGVTWSEREQLPPGILG-------PSKNKPILLENGLL 147 (321)
Q Consensus 85 ~l~~~~~G~l~l~~~~~~~~----------~~~~~~~~~S~D~G~TWs~~~~l~~~~~g-------~~~~~~~~~~~G~~ 147 (321)
+++.+++|+|+|++...... ..+...+.+|+|+|+||+.|..+.+.... ...+..+++.+|+|
T Consensus 80 ~~v~~~~g~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~S~D~G~tW~~p~~l~~~~~~~~~~~~~~~~g~gi~l~~Grl 159 (351)
T cd00260 80 TVVVDGLGRVFLLVGSFPNGEGEDNDYAGPSNAYLVLVYSDDDGITWSSPRDLTPSVKGDNWAALFTGPGSGIQMKDGRL 159 (351)
T ss_pred eEEEcCCCCEEEEEEECCCcccccccccCCCceEEEEEEEEcCCceecCCccCCccccCcceeEEEecCcCeEEecCCcE
Confidence 99887669999998653221 12345688999999999999887754310 11234577889999
Q ss_pred EEeeecccCC-CCcEEEEEECCCCceeEEeeceecCCCCcceeeeeEEEcCCCeEEEEEeecCCCCcEEEEEeccCCcCC
Q 020796 148 LCGSSVESWN-SWGSWMEVTVDAGRSWRKYGPIYIPNESLSVIQPVPFHTANRTLRVLMRSFNGIGRVCMSESCDGGLTW 226 (321)
Q Consensus 148 ~~~~~~~~~~-~~~~~~~~S~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~~~r~~~~~~~~~~~~S~D~G~tW 226 (321)
+++.+.+... .....+++|+|+|+||+..... ....++.|+.+++++||+|++++|... .+.+.+++|.|+|+||
T Consensus 160 v~p~~~~~~~~~~~~~~~~S~D~G~tW~~~~~~---~~~~~~~e~~i~el~dG~l~~~~R~~~-~~~~~~~~S~D~G~tW 235 (351)
T cd00260 160 VFPVYGGNAGGRVSSAIIYSDDSGKTWKLGEGV---NDAGGCSECSVVELSDGKLYMYTRDNS-GGRRPVYESRDMGTTW 235 (351)
T ss_pred EEEEEEEcCCCCEEEEEEEECCCCCCcEECCCC---CCCCCCcCCEEEEecCCEEEEEEeeCC-CCcEEEEEEcCCCcCc
Confidence 9997764422 3467889999999999876422 111356789999999999999999874 3677788999999999
Q ss_pred CCCccCCC---------CCCCCceeEEEcCC--CcEEEEE-eC---CCCCeEEEEEEcCCCCCCCcceeecccCCCceec
Q 020796 227 SYAKPTQL---------LNPNSGIDGVKLKD--GRLLLAY-NT---VSRGVLKVALSKDDGDSWHDALTLEENLAMEFSY 291 (321)
Q Consensus 227 s~~~~~~~---------~~~~~~~~~~~~~~--g~~~lv~-~~---~~r~~l~~~~S~D~G~tW~~~~~l~~~~~~~~~y 291 (321)
+.+..... +.+.....++.+.. |+.++++ ++ ..|..+.+++|.|+|++|.....+..+.. ..+|
T Consensus 236 s~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~g~~~ll~~~~~~~~~R~~l~l~~s~d~g~~w~~~~~i~~~~~-~~~Y 314 (351)
T cd00260 236 TEALGTLSRVWGNCPTRCGSGVQGSFITATIESGKKVMLLSRPNSPDSRSNLTLWLTDNNGSRWLDVGPISNGTD-GSGY 314 (351)
T ss_pred ccCcCCccccccccccCCCCcccceEEEeEecCCCEEEEEeCCCCCCCCCceEEEEEeCCCceEEeeeeeccCCC-ceEE
Confidence 99875432 12221123344332 5444544 33 26889999999999999999988886532 4799
Q ss_pred eEEEEccC-----CeEEEEEEeCC----CeeEEEEeC
Q 020796 292 PAVIQASD-----GSVHITYTYNR----TQIKHVVLL 319 (321)
Q Consensus 292 p~~~~~~d-----g~l~v~y~~~~----~~i~~~~~~ 319 (321)
+.++++.| +.++++||..+ ..|+++.++
T Consensus 315 s~~~~~~~~~~~~~~~~~l~E~~~~~~~~~i~~~~~~ 351 (351)
T cd00260 315 STLTELPDTGDSCGYLGLLYELGRGLGSNSIVYVLFT 351 (351)
T ss_pred eeeeecCCccCCCCEEEEEEEcCCCCCcceEEEEEcC
Confidence 99999888 89999999986 788888764
No 3
>COG4692 Predicted neuraminidase (sialidase) [Carbohydrate transport and metabolism]
Probab=99.95 E-value=8.1e-27 Score=195.63 Aligned_cols=298 Identities=28% Similarity=0.402 Sum_probs=216.9
Q ss_pred eeEEecCCCCCCCccccceEEEecCCcEEEEEecCCCCCCCCcEEEEEEeCCCCcCCcEEccCCCCCCCCCeEEEEeCCC
Q 020796 13 EEFTFPANSAPFKSCHASTIVEVDKGHFLVAYFGGSCEGAPDVKIWLQTFKDGRWQSPIIADEEPNVPMWNPVLFKLPSN 92 (321)
Q Consensus 13 ~~~~f~~~~~~~~~~~~p~l~~~~~g~l~~~~~~~~~~g~~~~~i~~s~s~~GtWs~~~~~~~~~~~~~~~p~l~~~~~G 92 (321)
+.++|... .+-.++|.+.+..+++|++.++||+++-||..|+.+.+..+.-..|.+|+.++-....++++|++|..+++
T Consensus 20 ~~vl~l~~-s~~~q~haaflhrl~~gtlv~awF~gt~eg~~D~~~s~~a~~~n~w~~pqrlsa~~~~s~~npvlf~~sdn 98 (381)
T COG4692 20 GRVLFLLI-SPMQQNHAAFLHRLPDGTLVCAWFGGTLEGKSDIFLSVLASSLNSWGEPQRLSADFSHSEQNPVLFKASDN 98 (381)
T ss_pred eeEEEeec-cccccCchHhhhcccccceechhhcccccCccchheeeehhhhcccCCcceeeeccCccccCceEEecCCc
Confidence 44556553 35578899999999999999999999999988986666666666999999998777788999999988766
Q ss_pred cEEEEEEeccccCCceeEEEEecCCCCCCCCCccCCCCC---CC-CCCCccEEccCCeEEEeeec------ccCC--CCc
Q 020796 93 GLLLFYKIGQEVQKWSGCMKRSYNKGVTWSEREQLPPGI---LG-PSKNKPILLENGLLLCGSSV------ESWN--SWG 160 (321)
Q Consensus 93 ~l~l~~~~~~~~~~~~~~~~~S~D~G~TWs~~~~l~~~~---~g-~~~~~~~~~~~G~~~~~~~~------~~~~--~~~ 160 (321)
||||++.+.....+-.....|+|.+.+|+-+..+.... .| ++....+..++|.|+.+.+. ..++ .++
T Consensus 99 -lwLF~t~~n~~~~~~~~~~~e~d~~~~~~~~a~lgn~l~lprg~~i~~~lv~~s~GaW~~~i~~~~~~pg~i~~~~~~r 177 (381)
T COG4692 99 -LWLFHTSQNQDECRIRMATKERDAHDPTRLIAKLGNYLDLPRGCFIRAPLVGRSDGAWLLPIFRCIQRPGQIWNGSHDR 177 (381)
T ss_pred -eEEEEccCCcceeeeeeeeeccccCCchhhhhccCCchhccCCCceeeeEEEecccchhhhhhhhhcCcccccCchhhh
Confidence 99999864222222334678999999999887654321 23 35555666789998875442 1122 357
Q ss_pred EEEEEECCCCceeEEeeceecCCCCcceeeeeEEEcCCCeEEEEEeecCCCCcEEEEEeccCCcCCCCCccCCCCCCCCc
Q 020796 161 SWMEVTVDAGRSWRKYGPIYIPNESLSVIQPVPFHTANRTLRVLMRSFNGIGRVCMSESCDGGLTWSYAKPTQLLNPNSG 240 (321)
Q Consensus 161 ~~~~~S~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~~~r~~~~~~~~~~~~S~D~G~tWs~~~~~~~~~~~~~ 240 (321)
..+-+|.|.|++|+... ++ ...||+........++++.++++... .++++...+.|+|.+|+.++++..|...+.
T Consensus 178 a~v~~s~d~gk~wr~~~-ln---~s~g~v~l~p~~~~~t~y~al~~~~q-~~~~~~~el~~~~r~~~~~QPTl~p~~~~~ 252 (381)
T COG4692 178 AAVGPSLDLGKSWRLKD-LN---TSDGCVHLSPYHEGDTQYAALFRRRQ-ADNVYRCELLDGGRTWSQPQPTLVPNNNSS 252 (381)
T ss_pred cccccccccCceeeecc-cc---ccCccEecChhhcccccchhhhhhhh-cCCeeeeeeccCcccccCcCccccCCCCch
Confidence 88999999999999753 42 23477766666556788888886543 367888899999999999998877776666
Q ss_pred eeEEE-cCCCcEEEEEeCC--------------------------------CCC-----------eEEEEEEcCCCCCCC
Q 020796 241 IDGVK-LKDGRLLLAYNTV--------------------------------SRG-----------VLKVALSKDDGDSWH 276 (321)
Q Consensus 241 ~~~~~-~~~g~~~lv~~~~--------------------------------~r~-----------~l~~~~S~D~G~tW~ 276 (321)
+.+.+ +.+|+++++.+.. .|. ++++ -+.|++.+|-
T Consensus 253 I~a~rn~~dg~i~~~c~~~~~adw~~~~~t~L~n~dd~~nl~~~~~~i~~v~~nPv~s~~g~R~~~~~i-a~~dn~~s~l 331 (381)
T COG4692 253 IAAFRNLKDGRIAMICNPPNAADWRASLYTELGNDDDDANLVGGCVPIWGVPRNPVNSDDGLRRFPLRI-AIEDNPGSCL 331 (381)
T ss_pred hhhhhhcCccceEEecCCCchhhhchhhhhhccCCccccCcccCccceEEeecCCcCCccccccchhhe-eeccCCCcce
Confidence 66665 7888888886532 011 1111 1245555666
Q ss_pred cceeecccCCCceeceEEEEccCCeEEEEEEeCCCeeEEEEeCC
Q 020796 277 DALTLEENLAMEFSYPAVIQASDGSVHITYTYNRTQIKHVVLLP 320 (321)
Q Consensus 277 ~~~~l~~~~~~~~~yp~~~~~~dg~l~v~y~~~~~~i~~~~~~~ 320 (321)
....++. .+...+||.+..-++ .|+++|++||--||+|||.+
T Consensus 332 sl~~ld~-~n~E~SYP~~~~~~~-~lhI~YTynR~~IkyvRl~~ 373 (381)
T COG4692 332 SLNSLDG-HNKEMSYPWLLEGPD-SLHIAYTYNRRAIKYVRLNP 373 (381)
T ss_pred ecccccc-cCceeccchhccCCC-eEEEEEEeeccceeEEEecH
Confidence 5555543 345789999998555 99999999999999999975
No 4
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=99.85 E-value=3.5e-20 Score=163.27 Aligned_cols=233 Identities=22% Similarity=0.322 Sum_probs=150.1
Q ss_pred eeeEEecCCCCCCCccccceEEEecCCcEEEEEecCCC-CCCCCcEEEEEEeCC-C-CcCCcEEccCCCCC---CCCCeE
Q 020796 12 AEEFTFPANSAPFKSCHASTIVEVDKGHFLVAYFGGSC-EGAPDVKIWLQTFKD-G-RWQSPIIADEEPNV---PMWNPV 85 (321)
Q Consensus 12 ~~~~~f~~~~~~~~~~~~p~l~~~~~g~l~~~~~~~~~-~g~~~~~i~~s~s~~-G-tWs~~~~~~~~~~~---~~~~p~ 85 (321)
+...|+.... +......|.|+..++|+|+++|..+.. .+.....+...+|.| | ||+++..+...... ......
T Consensus 34 ~~~~v~~~~~-~~~~~~~p~~~~~~~g~l~l~~~~~~~~~~~~~~~~~~~~S~D~G~TWs~~~~l~~~~~~~~~~~~~~~ 112 (275)
T PF13088_consen 34 EPRIVADGPK-PGRRYGNPSLVVDPDGRLWLFYSAGSSGGGWSGSRIYYSRSTDGGKTWSEPTDLPPGWFGNFSGPGRGP 112 (275)
T ss_dssp EEEEEETSTB-TTCEEEEEEEEEETTSEEEEEEEEEETTESCCTCEEEEEEESSTTSS-EEEEEEHHHCCCSCEECSEEE
T ss_pred CCEEEeeccc-cCCcccCcEEEEeCCCCEEEEEEEccCCCCCCceeEEEEEECCCCCCCCCccccccccccceeccceee
Confidence 3455666652 235557799998889999999844332 223344555688876 7 99999876533111 112222
Q ss_pred EEEeCCCcEEEEEEeccccCCceeEEEEecCCCCCCCCCccCCCCCCCCCCCccEEccCCeEEEeeecccCCCCcEEEEE
Q 020796 86 LFKLPSNGLLLFYKIGQEVQKWSGCMKRSYNKGVTWSEREQLPPGILGPSKNKPILLENGLLLCGSSVESWNSWGSWMEV 165 (321)
Q Consensus 86 l~~~~~G~l~l~~~~~~~~~~~~~~~~~S~D~G~TWs~~~~l~~~~~g~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~ 165 (321)
++..++|++++.+.. .........+.+|+|+|+||+....+... .+..+...+.+++|++++....+ .....++++
T Consensus 113 ~i~~~~G~l~~~~~~-~~~~~~~~~~~~S~D~G~tW~~~~~~~~~-~~~~e~~~~~~~dG~l~~~~R~~--~~~~~~~~~ 188 (275)
T PF13088_consen 113 PIQLPDGRLIAPYYH-ESGGSFSAFVYYSDDGGKTWSSGSPIPDG-QGECEPSIVELPDGRLLAVFRTE--GNDDIYISR 188 (275)
T ss_dssp EEEECTTEEEEEEEE-ESSCEEEEEEEEESSTTSSEEEEEECECS-EEEEEEEEEEETTSEEEEEEEEC--SSTEEEEEE
T ss_pred eeEecCCCEEEEEee-ccccCcceEEEEeCCCCceeecccccccc-CCcceeEEEECCCCcEEEEEEcc--CCCcEEEEE
Confidence 345569998876432 22233456788999999999988765421 12233344567899988765442 223678999
Q ss_pred ECCCCceeEEeeceecCCCCcceeeeeEEEcCCCeEEEEEeecCCCCcEEEEEeccCCcCCCCCccCCCCCC---CCcee
Q 020796 166 TVDAGRSWRKYGPIYIPNESLSVIQPVPFHTANRTLRVLMRSFNGIGRVCMSESCDGGLTWSYAKPTQLLNP---NSGID 242 (321)
Q Consensus 166 S~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~~~r~~~~~~~~~~~~S~D~G~tWs~~~~~~~~~~---~~~~~ 242 (321)
|.|+|+||+.+.++.++... ..+.++.+++|++++++........+.+..|.|+|+||+.+..+. +.+ .+...
T Consensus 189 S~D~G~TWs~~~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~~r~~l~l~~S~D~g~tW~~~~~i~-~~~~~~~~Y~~ 264 (275)
T PF13088_consen 189 STDGGRTWSPPQPTNLPNPN---SSISLVRLSDGRLLLVYNNPDGRSNLSLYVSEDGGKTWSRPKTID-DGPNGDSGYPS 264 (275)
T ss_dssp ESSTTSS-EEEEEEECSSCC---EEEEEEECTTSEEEEEEECSSTSEEEEEEEECTTCEEEEEEEEEE-EEE-CCEEEEE
T ss_pred ECCCCCcCCCceecccCccc---CCceEEEcCCCCEEEEEECCCCCCceEEEEEeCCCCcCCccEEEe-CCCCCcEECCe
Confidence 99999999997755544321 234566788999999988544456788899999999999866542 112 23356
Q ss_pred EEEcCCCcEEE
Q 020796 243 GVKLKDGRLLL 253 (321)
Q Consensus 243 ~~~~~~g~~~l 253 (321)
++.++||++++
T Consensus 265 ~~~~~dg~l~i 275 (275)
T PF13088_consen 265 LTQLPDGKLYI 275 (275)
T ss_dssp EEEEETTEEEE
T ss_pred eEEeCCCcCCC
Confidence 67778888875
No 5
>cd00260 Sialidase Sialidases or neuraminidases function to bind and hydrolyze terminal sialic acid residues from various glycoconjugates as well as playing roles in pathogenesis, bacterial nutrition and cellular interactions. They have a six-bladed, beta-propeller fold with the non-viral sialidases containing 2-5 Asp-box motifs (most commonly Ser/Thr-X-Asp-[X]-Gly-X-Thr- Trp/Phe). This CD includes eubacterial, eukaryotic, and viral sialidases.
Probab=99.73 E-value=1.1e-15 Score=139.33 Aligned_cols=204 Identities=20% Similarity=0.203 Sum_probs=128.6
Q ss_pred CCCCCeEEEEeCCCcEEEEEEecc----ccC-CceeEEEEecCCCCCCCCCccCCCCCCC--CCCCccEEccC-CeEEEe
Q 020796 79 VPMWNPVLFKLPSNGLLLFYKIGQ----EVQ-KWSGCMKRSYNKGVTWSEREQLPPGILG--PSKNKPILLEN-GLLLCG 150 (321)
Q Consensus 79 ~~~~~p~l~~~~~G~l~l~~~~~~----~~~-~~~~~~~~S~D~G~TWs~~~~l~~~~~g--~~~~~~~~~~~-G~~~~~ 150 (321)
..++.|.|+..++ .|++++.... +.. .-+..+++|+|+|+||+++..+...... ....+.++... |++++.
T Consensus 14 ~~~RiPsl~~~~~-~lla~~e~r~~~~~D~~~~~~iv~~~S~D~G~tW~~~~~i~~~~~~~~~~~~p~~v~~~~g~l~l~ 92 (351)
T cd00260 14 GSFRIPSLVCTPG-TLLAFADARYGGCSDRSNAIDIVARRSTDGGKTWSPSTVISDGDGKSSRVKDPTVVVDGLGRVFLL 92 (351)
T ss_pred EEEecceEEEECC-EEEEEEEEEEcCCCCCCcccceeEEEeccCCCcccccEEehhcCCCCCcEEcceEEEcCCCCEEEE
Confidence 3577899998877 7777765321 112 2245688999999999999877653211 11222233333 888665
Q ss_pred eeccc-----------CCCCcEEEEEECCCCceeEEeeceecCCC--Ccceee--e-eEEEcCCCeEEEEEeecCC--CC
Q 020796 151 SSVES-----------WNSWGSWMEVTVDAGRSWRKYGPIYIPNE--SLSVIQ--P-VPFHTANRTLRVLMRSFNG--IG 212 (321)
Q Consensus 151 ~~~~~-----------~~~~~~~~~~S~D~G~tW~~~~~~~~~~~--~~~~~~--~-~~~~~~~G~l~~~~r~~~~--~~ 212 (321)
..... .......+.+|+|+|+||+.+..+..... ...... + ..+++.+|+|++.++.... ..
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~S~D~G~tW~~p~~l~~~~~~~~~~~~~~~~g~gi~l~~Grlv~p~~~~~~~~~~ 172 (351)
T cd00260 93 VGSFPNGEGEDNDYAGPSNAYLVLVYSDDDGITWSSPRDLTPSVKGDNWAALFTGPGSGIQMKDGRLVFPVYGGNAGGRV 172 (351)
T ss_pred EEECCCcccccccccCCCceEEEEEEEEcCCceecCCccCCccccCcceeEEEecCcCeEEecCCcEEEEEEEEcCCCCE
Confidence 33211 11346788999999999998764432110 111111 1 2355678999888765432 23
Q ss_pred cEEEEEeccCCcCCCCCccCCCCCCCCceeEEEcCCCcEEEEEeCCCCCeEEEEEEcCCCCCCCcceeecc
Q 020796 213 RVCMSESCDGGLTWSYAKPTQLLNPNSGIDGVKLKDGRLLLAYNTVSRGVLKVALSKDDGDSWHDALTLEE 283 (321)
Q Consensus 213 ~~~~~~S~D~G~tWs~~~~~~~~~~~~~~~~~~~~~g~~~lv~~~~~r~~l~~~~S~D~G~tW~~~~~l~~ 283 (321)
...+.+|+|+|+||+...............++.+++|+++|+.+......+.++.|.|+|+||+++.....
T Consensus 173 ~~~~~~S~D~G~tW~~~~~~~~~~~~~e~~i~el~dG~l~~~~R~~~~~~~~~~~S~D~G~tWs~~~~~~~ 243 (351)
T cd00260 173 SSAIIYSDDSGKTWKLGEGVNDAGGCSECSVVELSDGKLYMYTRDNSGGRRPVYESRDMGTTWTEALGTLS 243 (351)
T ss_pred EEEEEEECCCCCCcEECCCCCCCCCCcCCEEEEecCCEEEEEEeeCCCCcEEEEEEcCCCcCcccCcCCcc
Confidence 45667899999999876543210112235678888999999887643456678999999999999865443
No 6
>PF13859 BNR_3: BNR repeat-like domain; PDB: 3B69_A.
Probab=99.73 E-value=1.9e-15 Score=133.33 Aligned_cols=267 Identities=18% Similarity=0.293 Sum_probs=141.5
Q ss_pred cceEEEecCCcEEEEEecCCC---CCCCCcEEEEEEeCC-C-CcCCcEEccCC----CCCCCCCeEEEEeCCCcEEEEEE
Q 020796 29 ASTIVEVDKGHFLVAYFGGSC---EGAPDVKIWLQTFKD-G-RWQSPIIADEE----PNVPMWNPVLFKLPSNGLLLFYK 99 (321)
Q Consensus 29 ~p~l~~~~~g~l~~~~~~~~~---~g~~~~~i~~s~s~~-G-tWs~~~~~~~~----~~~~~~~p~l~~~~~G~l~l~~~ 99 (321)
.|+|+.. +|.|+|+ .+.+. .......|....+.+ + +|+.+..+... ......+|..+ .+.+.||++..
T Consensus 1 vPSLV~v-gGvv~Av-AEa~~~~~~~~~~~~ias~~~~~~g~tw~~~~~~~~~~~~~~~v~v~rPTtv-vkgn~IymLvG 77 (310)
T PF13859_consen 1 VPSLVEV-GGVVFAV-AEAQCKKSNDSGFTDIASEYSTDNGETWKAEVAVLNDDGSKKRVDVSRPTTV-VKGNKIYMLVG 77 (310)
T ss_dssp -EEEEEE-TTEEEEE-EEEESS-S-SSS-EEEEEEEESSSSSS-EEEEEE----SS-TT-EEEEEEEE-EETTEEEEEEE
T ss_pred CCCEEEE-CCEEEEE-EEEEEccCCCCCceeEEEeEeeccccccccceeeecccccccccccceeeee-ecceeEEEEEE
Confidence 4899988 4778776 34332 112234455555543 5 99998754321 12234467643 45788998864
Q ss_pred ecc---ccCCceeEEEEecCCCCCCCCCccCCCCCC----CC--CCCccEEccCCeEEEeeecccCCCC--cEEEEEECC
Q 020796 100 IGQ---EVQKWSGCMKRSYNKGVTWSEREQLPPGIL----GP--SKNKPILLENGLLLCGSSVESWNSW--GSWMEVTVD 168 (321)
Q Consensus 100 ~~~---~~~~~~~~~~~S~D~G~TWs~~~~l~~~~~----g~--~~~~~~~~~~G~~~~~~~~~~~~~~--~~~~~~S~D 168 (321)
... ....|...+++|+|+|.+|..+..+..... .. -.++.+++.||.+++|......++. ...+++|+|
T Consensus 78 ~y~~~~~~~~~~llLvks~~~g~~W~~~~~l~~~~~~~~~~figgGGSGV~m~dGTLVFPv~a~~~~~~~~~SlIiYS~d 157 (310)
T PF13859_consen 78 SYSRSAGADDWGLLLVKSTDGGIKWGDTKSLPSTSFQSWKQFIGGGGSGVVMEDGTLVFPVQATKKNGDGTVSLIIYSTD 157 (310)
T ss_dssp EESS--SSTTEEEEEEEEESSSSEE---EE-GGGS-EEEEEEEE-SEE-EE-TTS-EEEEEEEEETT---EEEEEEEESS
T ss_pred EEeccccccccceeeeeccCCcceeeecccCCchhccccceeecCCCCceEEcCCCEEEEEeeeccCccceEEEEEEECC
Confidence 311 123566778899999999999988764221 11 1234578899999998654332333 567899999
Q ss_pred CCceeEEeeceecCCCCcceeeeeEEEcCCCeEEEEEeecCCCCcEEEEEeccCCcCCCCCccC-C-----CCCCC-Cce
Q 020796 169 AGRSWRKYGPIYIPNESLSVIQPVPFHTANRTLRVLMRSFNGIGRVCMSESCDGGLTWSYAKPT-Q-----LLNPN-SGI 241 (321)
Q Consensus 169 ~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~~~r~~~~~~~~~~~~S~D~G~tWs~~~~~-~-----~~~~~-~~~ 241 (321)
+|++|..+.... ..+|.+|++++.++|+|+|+.+...+..++| .|.|.|.||+.+..+ . .+... ..+
T Consensus 158 ~g~~W~lskg~s----~~gC~~psv~EWe~gkLlM~~~c~~g~rrVY--eS~DmG~tWtea~gtlsrVw~ns~~~~~~~v 231 (310)
T PF13859_consen 158 DGKTWKLSKGMS----PAGCSDPSVVEWEDGKLLMMTACDDGRRRVY--ESGDMGTTWTEALGTLSRVWGNSQGVQGGFV 231 (310)
T ss_dssp TTSS-EE-S--------TT-EEEEEEEE-TTEEEEEEE-TTS---EE--EESSTTSS-EE-TTTTTT---SST-----EE
T ss_pred CccceEeccccC----CCCcceEEEEeccCCeeEEEEecccceEEEE--EEcccceehhhccCccceeeccccccCccce
Confidence 999999875331 2489999999998999999998876434554 689999999985432 1 11111 112
Q ss_pred eE--EEcCCCcEEEEEe-C-------CCCCeEEEEEEcCCCCCCCcceeecccCCCceeceEEEEccCC------eEEEE
Q 020796 242 DG--VKLKDGRLLLAYN-T-------VSRGVLKVALSKDDGDSWHDALTLEENLAMEFSYPAVIQASDG------SVHIT 305 (321)
Q Consensus 242 ~~--~~~~~g~~~lv~~-~-------~~r~~l~~~~S~D~G~tW~~~~~l~~~~~~~~~yp~~~~~~dg------~l~v~ 305 (321)
.+ ....+|+-+|++. + ..+..|.++++ |+-+++.-- .+.... .+..+..|....++ .|+++
T Consensus 232 ~~~~ta~iegr~VmL~T~~~y~~~~~~~~~~L~LWlT-Dn~r~~~vG-pvs~~~-~~~~~ssLLY~~~~~~~~~~~L~~l 308 (310)
T PF13859_consen 232 TAGITATIEGRKVMLYTQPVYSSGNEKEKGRLHLWLT-DNNRIFDVG-PVSMED-DDAAASSLLYKSGKGNNNKEELIAL 308 (310)
T ss_dssp EE----EETTEEEEEEEEE---SS-T-T-B-EEEEEE-SSS-EEEEE-E-S-TT--B---EEEEE-SS--------EEEE
T ss_pred eeeeeeccCCcEEEEEEEeeccccCccccceeEEEeC-CCcEEEEEe-cccCCC-cchhhhhceEecCCcccceeeEEEe
Confidence 22 1234577667653 2 15678999996 445544332 232111 24567788875443 48999
Q ss_pred EE
Q 020796 306 YT 307 (321)
Q Consensus 306 y~ 307 (321)
|+
T Consensus 309 ye 310 (310)
T PF13859_consen 309 YE 310 (310)
T ss_dssp EE
T ss_pred cC
Confidence 86
No 7
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=99.41 E-value=3.9e-11 Score=105.50 Aligned_cols=216 Identities=19% Similarity=0.227 Sum_probs=93.0
Q ss_pred CCcEEEEEecCCCCCCC--CcEEEEEEeCCC-CcCCcEEccCCCCCCCCCeEEEEeCCCcEEEEEEeccccCCceeEEEE
Q 020796 37 KGHFLVAYFGGSCEGAP--DVKIWLQTFKDG-RWQSPIIADEEPNVPMWNPVLFKLPSNGLLLFYKIGQEVQKWSGCMKR 113 (321)
Q Consensus 37 ~g~l~~~~~~~~~~g~~--~~~i~~s~s~~G-tWs~~~~~~~~~~~~~~~p~l~~~~~G~l~l~~~~~~~~~~~~~~~~~ 113 (321)
+..|+.++|....+|.. .....+.+.++| ||++...-.+.+...+.+.+-+ . +.+.++. +. .+.+.+
T Consensus 16 ~~~l~dV~F~d~~~G~~VG~~g~il~T~DGG~tW~~~~~~~~~~~~~~l~~I~f-~-~~~g~iv---G~-----~g~ll~ 85 (302)
T PF14870_consen 16 DKPLLDVAFVDPNHGWAVGAYGTILKTTDGGKTWQPVSLDLDNPFDYHLNSISF-D-GNEGWIV---GE-----PGLLLH 85 (302)
T ss_dssp SS-EEEEEESSSS-EEEEETTTEEEEESSTTSS-EE-----S-----EEEEEEE-E-TTEEEEE---EE-----TTEEEE
T ss_pred CCceEEEEEecCCEEEEEecCCEEEEECCCCccccccccCCCccceeeEEEEEe-c-CCceEEE---cC-----CceEEE
Confidence 45778887775544311 112456677777 9998663333221222222222 2 3445543 21 346899
Q ss_pred ecCCCCCCCCCccCCCCCCCCCCCccEEccCCeEEEeeecccCCCCcEEEEEECCCCceeEEeeceecCCCCcceeeeeE
Q 020796 114 SYNKGVTWSEREQLPPGILGPSKNKPILLENGLLLCGSSVESWNSWGSWMEVTVDAGRSWRKYGPIYIPNESLSVIQPVP 193 (321)
Q Consensus 114 S~D~G~TWs~~~~l~~~~~g~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~S~D~G~tW~~~~~~~~~~~~~~~~~~~~ 193 (321)
|+|+|+||+.... .....|.. ..+..+.++.+++.. ....+++|+|+|++|+.... + ..+.+ ..+
T Consensus 86 T~DgG~tW~~v~l-~~~lpgs~-~~i~~l~~~~~~l~~-------~~G~iy~T~DgG~tW~~~~~----~-~~gs~-~~~ 150 (302)
T PF14870_consen 86 TTDGGKTWERVPL-SSKLPGSP-FGITALGDGSAELAG-------DRGAIYRTTDGGKTWQAVVS----E-TSGSI-NDI 150 (302)
T ss_dssp ESSTTSS-EE-----TT-SS-E-EEEEEEETTEEEEEE-------TT--EEEESSTTSSEEEEE-----S-----E-EEE
T ss_pred ecCCCCCcEEeec-CCCCCCCe-eEEEEcCCCcEEEEc-------CCCcEEEeCCCCCCeeEccc----C-Cccee-EeE
Confidence 9999999987542 21111100 112344556555432 23679999999999997531 1 11211 123
Q ss_pred EEcCCCeEEEEEeecC--------------------------------------CCCcEEEEEeccCCcCCCCCccCCCC
Q 020796 194 FHTANRTLRVLMRSFN--------------------------------------GIGRVCMSESCDGGLTWSYAKPTQLL 235 (321)
Q Consensus 194 ~~~~~G~l~~~~r~~~--------------------------------------~~~~~~~~~S~D~G~tWs~~~~~~~~ 235 (321)
...+||+++++-.... ..+.++.+...|.+.+|+++.. ++.
T Consensus 151 ~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~~~~~w~~~~~-~~~ 229 (302)
T PF14870_consen 151 TRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLARGGQIQFSDDPDDGETWSEPII-PIK 229 (302)
T ss_dssp EE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEETTTEEEEEE-TTEEEEE---B--TTS
T ss_pred EECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEeCCcEEEEccCCCCccccccccC-Ccc
Confidence 4455666555431100 0022222211255566665431 111
Q ss_pred CCCCc-eeEEEcCCCcEEEEEeCCCCCeEEEEEEcCCCCCCCcceeecc
Q 020796 236 NPNSG-IDGVKLKDGRLLLAYNTVSRGVLKVALSKDDGDSWHDALTLEE 283 (321)
Q Consensus 236 ~~~~~-~~~~~~~~g~~~lv~~~~~r~~l~~~~S~D~G~tW~~~~~l~~ 283 (321)
....+ +.+....++.++++.... .+++|.|+|+||++......
T Consensus 230 ~~~~~~ld~a~~~~~~~wa~gg~G-----~l~~S~DgGktW~~~~~~~~ 273 (302)
T PF14870_consen 230 TNGYGILDLAYRPPNEIWAVGGSG-----TLLVSTDGGKTWQKDRVGEN 273 (302)
T ss_dssp S--S-EEEEEESSSS-EEEEESTT------EEEESSTTSS-EE-GGGTT
T ss_pred cCceeeEEEEecCCCCEEEEeCCc-----cEEEeCCCCccceECccccC
Confidence 11111 233444456666665433 68899999999998765543
No 8
>PRK13684 Ycf48-like protein; Provisional
Probab=99.37 E-value=3.1e-10 Score=102.46 Aligned_cols=144 Identities=17% Similarity=0.195 Sum_probs=83.7
Q ss_pred eeEEEEecCCCCCCCCCccCCCCCCCCCCCccEEccCCeEEEeeecccCCCCcEEEEEE-CCCCceeEEeeceecCCCCc
Q 020796 108 SGCMKRSYNKGVTWSEREQLPPGILGPSKNKPILLENGLLLCGSSVESWNSWGSWMEVT-VDAGRSWRKYGPIYIPNESL 186 (321)
Q Consensus 108 ~~~~~~S~D~G~TWs~~~~l~~~~~g~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~S-~D~G~tW~~~~~~~~~~~~~ 186 (321)
.+.+++|+|+|+||+....-.. +.. ..+...++|.+++.. ....++.| +|+|++|+... . .. ..
T Consensus 151 ~G~i~~S~DgG~tW~~~~~~~~---g~~-~~i~~~~~g~~v~~g-------~~G~i~~s~~~gg~tW~~~~-~--~~-~~ 215 (334)
T PRK13684 151 VGAIYRTTDGGKNWEALVEDAA---GVV-RNLRRSPDGKYVAVS-------SRGNFYSTWEPGQTAWTPHQ-R--NS-SR 215 (334)
T ss_pred cceEEEECCCCCCceeCcCCCc---ceE-EEEEECCCCeEEEEe-------CCceEEEEcCCCCCeEEEee-C--CC-cc
Confidence 4568999999999997543221 111 112234566544331 13456666 47779998753 1 11 11
Q ss_pred ceeeeeEEEcCCCeEEEEEeecCCCCcEEEEEeccCCcCCCCCccCCCCCCCCce-eEEEcCCCcEEEEEeCCCCCeEEE
Q 020796 187 SVIQPVPFHTANRTLRVLMRSFNGIGRVCMSESCDGGLTWSYAKPTQLLNPNSGI-DGVKLKDGRLLLAYNTVSRGVLKV 265 (321)
Q Consensus 187 ~~~~~~~~~~~~G~l~~~~r~~~~~~~~~~~~S~D~G~tWs~~~~~~~~~~~~~~-~~~~~~~g~~~lv~~~~~r~~l~~ 265 (321)
.. ..+...++|+++++... +.++ ..|.|+|.+|+.... +.......+ .+...++++++++.+.. .+
T Consensus 216 ~l--~~i~~~~~g~~~~vg~~----G~~~-~~s~d~G~sW~~~~~-~~~~~~~~l~~v~~~~~~~~~~~G~~G-----~v 282 (334)
T PRK13684 216 RL--QSMGFQPDGNLWMLARG----GQIR-FNDPDDLESWSKPII-PEITNGYGYLDLAYRTPGEIWAGGGNG-----TL 282 (334)
T ss_pred cc--eeeeEcCCCCEEEEecC----CEEE-EccCCCCCccccccC-CccccccceeeEEEcCCCCEEEEcCCC-----eE
Confidence 11 23455677888776432 3333 337899999997532 111111122 33444578888887643 56
Q ss_pred EEEcCCCCCCCcce
Q 020796 266 ALSKDDGDSWHDAL 279 (321)
Q Consensus 266 ~~S~D~G~tW~~~~ 279 (321)
.+|.|+|++|+...
T Consensus 283 ~~S~d~G~tW~~~~ 296 (334)
T PRK13684 283 LVSKDGGKTWEKDP 296 (334)
T ss_pred EEeCCCCCCCeECC
Confidence 78999999999864
No 9
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=99.32 E-value=9.6e-10 Score=100.72 Aligned_cols=206 Identities=17% Similarity=0.168 Sum_probs=109.7
Q ss_pred CcEEEEEe--cCCCCCC--CCcEEEEEEeCCC-CcCCcEEcc-CCCCC-CCCCeEEEEeCCCcEEEEEEeccccCCceeE
Q 020796 38 GHFLVAYF--GGSCEGA--PDVKIWLQTFKDG-RWQSPIIAD-EEPNV-PMWNPVLFKLPSNGLLLFYKIGQEVQKWSGC 110 (321)
Q Consensus 38 g~l~~~~~--~~~~~g~--~~~~i~~s~s~~G-tWs~~~~~~-~~~~~-~~~~p~l~~~~~G~l~l~~~~~~~~~~~~~~ 110 (321)
..|+.++| ....+|. +...+.+.+.++| ||++..... .++.. .+.+-+.+. +++.|++ + ..+.
T Consensus 88 ~~L~~V~F~~~d~~~GwAVG~~G~IL~T~DGG~tW~~~~~~~~~~~~~~~~l~~v~f~--~~~g~~v---G-----~~G~ 157 (398)
T PLN00033 88 VVLLDIAFVPDDPTHGFLLGTRQTLLETKDGGKTWVPRSIPSAEDEDFNYRFNSISFK--GKEGWII---G-----KPAI 157 (398)
T ss_pred CceEEEEeccCCCCEEEEEcCCCEEEEEcCCCCCceECccCcccccccccceeeeEEE--CCEEEEE---c-----CceE
Confidence 36888888 3333331 1223456666667 999854211 11221 122222232 3455543 2 1457
Q ss_pred EEEecCCCCCCCCCccCCCCCCCCCCCccEEccCCeEEEeeecccCCCCcEEEEEECCCCceeEEee--cee--cC-CCC
Q 020796 111 MKRSYNKGVTWSEREQLPPGILGPSKNKPILLENGLLLCGSSVESWNSWGSWMEVTVDAGRSWRKYG--PIY--IP-NES 185 (321)
Q Consensus 111 ~~~S~D~G~TWs~~~~l~~~~~g~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~S~D~G~tW~~~~--~~~--~~-~~~ 185 (321)
+.+|+|+|+||+.... .+...+. ........++..++.. ....+++|+|+|++|+... +.. +. ...
T Consensus 158 il~T~DgG~tW~~~~~-~~~~p~~-~~~i~~~~~~~~~ivg-------~~G~v~~S~D~G~tW~~~~~~t~~~~l~~~~~ 228 (398)
T PLN00033 158 LLHTSDGGETWERIPL-SPKLPGE-PVLIKATGPKSAEMVT-------DEGAIYVTSNAGRNWKAAVEETVSATLNRTVS 228 (398)
T ss_pred EEEEcCCCCCceECcc-ccCCCCC-ceEEEEECCCceEEEe-------ccceEEEECCCCCCceEccccccccccccccc
Confidence 8999999999986432 1111000 0111222334333331 2456999999999999752 100 00 000
Q ss_pred ---cc--ee---eeeEEEcCCCeEEEEEeecCCCCcEEEEEeccCCcC-CCCCccCCCCCCCCceeEEEcCCCcEEEEEe
Q 020796 186 ---LS--VI---QPVPFHTANRTLRVLMRSFNGIGRVCMSESCDGGLT-WSYAKPTQLLNPNSGIDGVKLKDGRLLLAYN 256 (321)
Q Consensus 186 ---~~--~~---~~~~~~~~~G~l~~~~r~~~~~~~~~~~~S~D~G~t-Ws~~~~~~~~~~~~~~~~~~~~~g~~~lv~~ 256 (321)
.+ .. -..+...+||+++++... +.++ +|.|.|.+ |.+... +....-..+....+|.++|+.+
T Consensus 229 s~~~g~~~y~Gsf~~v~~~~dG~~~~vg~~----G~~~--~s~d~G~~~W~~~~~---~~~~~l~~v~~~~dg~l~l~g~ 299 (398)
T PLN00033 229 SGISGASYYTGTFSTVNRSPDGDYVAVSSR----GNFY--LTWEPGQPYWQPHNR---ASARRIQNMGWRADGGLWLLTR 299 (398)
T ss_pred ccccccceeccceeeEEEcCCCCEEEEECC----ccEE--EecCCCCcceEEecC---CCccceeeeeEcCCCCEEEEeC
Confidence 00 00 113345677877765432 4444 57788887 786442 2222222344567899999987
Q ss_pred CCCCCeEEEEEEcCCCCCCC
Q 020796 257 TVSRGVLKVALSKDDGDSWH 276 (321)
Q Consensus 257 ~~~r~~l~~~~S~D~G~tW~ 276 (321)
.. .+..|.|+|.+|+
T Consensus 300 ~G-----~l~~S~d~G~~~~ 314 (398)
T PLN00033 300 GG-----GLYVSKGTGLTEE 314 (398)
T ss_pred Cc-----eEEEecCCCCccc
Confidence 64 6788999999885
No 10
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=99.26 E-value=3e-09 Score=97.52 Aligned_cols=189 Identities=19% Similarity=0.208 Sum_probs=105.5
Q ss_pred EEEEEEeCCC-CcCCcEEccCCCCCCCCCeEEEEeCCCcEEEEEEeccccCCceeEEEEecCCCCCCCCCccCCC-----
Q 020796 56 KIWLQTFKDG-RWQSPIIADEEPNVPMWNPVLFKLPSNGLLLFYKIGQEVQKWSGCMKRSYNKGVTWSEREQLPP----- 129 (321)
Q Consensus 56 ~i~~s~s~~G-tWs~~~~~~~~~~~~~~~p~l~~~~~G~l~l~~~~~~~~~~~~~~~~~S~D~G~TWs~~~~l~~----- 129 (321)
.+++.+.++| ||+....-...|.... .+....++..+++ . ..+.+++|+|+|+||+.....+.
T Consensus 156 G~il~T~DgG~tW~~~~~~~~~p~~~~---~i~~~~~~~~~iv-g-------~~G~v~~S~D~G~tW~~~~~~t~~~~l~ 224 (398)
T PLN00033 156 AILLHTSDGGETWERIPLSPKLPGEPV---LIKATGPKSAEMV-T-------DEGAIYVTSNAGRNWKAAVEETVSATLN 224 (398)
T ss_pred eEEEEEcCCCCCceECccccCCCCCce---EEEEECCCceEEE-e-------ccceEEEECCCCCCceEccccccccccc
Confidence 3556666667 9986432111121111 1222334444443 1 14568999999999986522110
Q ss_pred -----CCCC--CCCCc---cEEccCCeEEEeeecccCCCCcEEEEEECCCCce-eEEeeceecCCCCcceeeeeEEEcCC
Q 020796 130 -----GILG--PSKNK---PILLENGLLLCGSSVESWNSWGSWMEVTVDAGRS-WRKYGPIYIPNESLSVIQPVPFHTAN 198 (321)
Q Consensus 130 -----~~~g--~~~~~---~~~~~~G~~~~~~~~~~~~~~~~~~~~S~D~G~t-W~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (321)
+..+ +..+. .....+|++++.. .+..+++|.|+|.+ |++.. . +. .... ..+....+
T Consensus 225 ~~~~s~~~g~~~y~Gsf~~v~~~~dG~~~~vg-------~~G~~~~s~d~G~~~W~~~~-~--~~-~~~l--~~v~~~~d 291 (398)
T PLN00033 225 RTVSSGISGASYYTGTFSTVNRSPDGDYVAVS-------SRGNFYLTWEPGQPYWQPHN-R--AS-ARRI--QNMGWRAD 291 (398)
T ss_pred ccccccccccceeccceeeEEEcCCCCEEEEE-------CCccEEEecCCCCcceEEec-C--CC-ccce--eeeeEcCC
Confidence 1111 01111 2334566655542 23568999999987 89753 2 11 1111 23444678
Q ss_pred CeEEEEEeecCCCCcEEEEEeccCCcCCCC--CccCCCCCCCCc-eeEEEcCCCcEEEEEeCCCCCeEEEEEEcCCCCCC
Q 020796 199 RTLRVLMRSFNGIGRVCMSESCDGGLTWSY--AKPTQLLNPNSG-IDGVKLKDGRLLLAYNTVSRGVLKVALSKDDGDSW 275 (321)
Q Consensus 199 G~l~~~~r~~~~~~~~~~~~S~D~G~tWs~--~~~~~~~~~~~~-~~~~~~~~g~~~lv~~~~~r~~l~~~~S~D~G~tW 275 (321)
|.++++.+. +.+ ..|.|.|++|+. ......+..... ..+...+++.++++.+.. .+.+|.|+|++|
T Consensus 292 g~l~l~g~~----G~l--~~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G-----~v~~s~D~G~tW 360 (398)
T PLN00033 292 GGLWLLTRG----GGL--YVSKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAGGSG-----ILLRSTDGGKSW 360 (398)
T ss_pred CCEEEEeCC----ceE--EEecCCCCcccccceeecccCCCCcceEEEEEcCCCcEEEEECCC-----cEEEeCCCCcce
Confidence 899887644 445 457899998863 222222211112 334556778998888754 678899999999
Q ss_pred Ccce
Q 020796 276 HDAL 279 (321)
Q Consensus 276 ~~~~ 279 (321)
+...
T Consensus 361 ~~~~ 364 (398)
T PLN00033 361 KRDK 364 (398)
T ss_pred eEcc
Confidence 9864
No 11
>PRK13684 Ycf48-like protein; Provisional
Probab=99.19 E-value=5e-09 Score=94.67 Aligned_cols=144 Identities=15% Similarity=0.163 Sum_probs=79.7
Q ss_pred eeEEEEecCCCCCCCCCccCCCCCCCCCCCccEEccCCeEEEeeecccCCCCcEEEEEECCCCceeEEeeceecCCCCcc
Q 020796 108 SGCMKRSYNKGVTWSEREQLPPGILGPSKNKPILLENGLLLCGSSVESWNSWGSWMEVTVDAGRSWRKYGPIYIPNESLS 187 (321)
Q Consensus 108 ~~~~~~S~D~G~TWs~~~~l~~~~~g~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~S~D~G~tW~~~~~~~~~~~~~~ 187 (321)
.+.+.+|+|+|+||+....- ....+ .........++.+++. +....+++|+|+|+||+....- . .+
T Consensus 108 ~g~i~~S~DgG~tW~~~~~~-~~~~~-~~~~i~~~~~~~~~~~-------g~~G~i~~S~DgG~tW~~~~~~-~----~g 173 (334)
T PRK13684 108 PSLLLHTTDGGKNWTRIPLS-EKLPG-SPYLITALGPGTAEMA-------TNVGAIYRTTDGGKNWEALVED-A----AG 173 (334)
T ss_pred CceEEEECCCCCCCeEccCC-cCCCC-CceEEEEECCCcceee-------eccceEEEECCCCCCceeCcCC-C----cc
Confidence 34688999999999876421 11101 0001222223333332 1245799999999999985411 1 12
Q ss_pred eeeeeEEEcCCCeEEEEEeecCCCCcEEEEEeccCCcCCCCCccCCCCCCCCceeEEEcCCCcEEEEEeCCCCCeEEEEE
Q 020796 188 VIQPVPFHTANRTLRVLMRSFNGIGRVCMSESCDGGLTWSYAKPTQLLNPNSGIDGVKLKDGRLLLAYNTVSRGVLKVAL 267 (321)
Q Consensus 188 ~~~~~~~~~~~G~l~~~~r~~~~~~~~~~~~S~D~G~tWs~~~~~~~~~~~~~~~~~~~~~g~~~lv~~~~~r~~l~~~~ 267 (321)
.+ ..+...++|.++++... +.++. ..+|+|++|+.... +....-..+...++++++++.+.. .+.+
T Consensus 174 ~~-~~i~~~~~g~~v~~g~~----G~i~~-s~~~gg~tW~~~~~---~~~~~l~~i~~~~~g~~~~vg~~G-----~~~~ 239 (334)
T PRK13684 174 VV-RNLRRSPDGKYVAVSSR----GNFYS-TWEPGQTAWTPHQR---NSSRRLQSMGFQPDGNLWMLARGG-----QIRF 239 (334)
T ss_pred eE-EEEEECCCCeEEEEeCC----ceEEE-EcCCCCCeEEEeeC---CCcccceeeeEcCCCCEEEEecCC-----EEEE
Confidence 11 13444566766544321 44443 23577899987432 111111234455788988886543 2334
Q ss_pred -EcCCCCCCCcce
Q 020796 268 -SKDDGDSWHDAL 279 (321)
Q Consensus 268 -S~D~G~tW~~~~ 279 (321)
|.|+|.+|+.+.
T Consensus 240 ~s~d~G~sW~~~~ 252 (334)
T PRK13684 240 NDPDDLESWSKPI 252 (334)
T ss_pred ccCCCCCcccccc
Confidence 689999999753
No 12
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=99.00 E-value=5.4e-09 Score=92.03 Aligned_cols=143 Identities=19% Similarity=0.286 Sum_probs=70.3
Q ss_pred eEEEEecCCCCCCCCCccCCCCCCCCCCCccEEccCCeEEEeeecccCCCCcEEEEEECCCCceeEEeece--ecCCCCc
Q 020796 109 GCMKRSYNKGVTWSEREQLPPGILGPSKNKPILLENGLLLCGSSVESWNSWGSWMEVTVDAGRSWRKYGPI--YIPNESL 186 (321)
Q Consensus 109 ~~~~~S~D~G~TWs~~~~l~~~~~g~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~S~D~G~tW~~~~~~--~~~~~~~ 186 (321)
+.+.+|+|+|+||++...-.+....... ..+...+...++.. + ...+++|+|+|+||+... + .+++..+
T Consensus 37 g~il~T~DGG~tW~~~~~~~~~~~~~~l-~~I~f~~~~g~ivG--~-----~g~ll~T~DgG~tW~~v~-l~~~lpgs~~ 107 (302)
T PF14870_consen 37 GTILKTTDGGKTWQPVSLDLDNPFDYHL-NSISFDGNEGWIVG--E-----PGLLLHTTDGGKTWERVP-LSSKLPGSPF 107 (302)
T ss_dssp TEEEEESSTTSS-EE-----S-----EE-EEEEEETTEEEEEE--E-----TTEEEEESSTTSS-EE-----TT-SS-EE
T ss_pred CEEEEECCCCccccccccCCCccceeeE-EEEEecCCceEEEc--C-----CceEEEecCCCCCcEEee-cCCCCCCCee
Confidence 4688999999999976532111101111 11233344444431 1 356999999999999863 2 1232221
Q ss_pred ceeeeeEEEcCCCeEEEEEeecCCCCcEEEEEeccCCcCCCCCccCCCCCCCCceeEEEcCCCcEEEEEeCCCCCeEEEE
Q 020796 187 SVIQPVPFHTANRTLRVLMRSFNGIGRVCMSESCDGGLTWSYAKPTQLLNPNSGIDGVKLKDGRLLLAYNTVSRGVLKVA 266 (321)
Q Consensus 187 ~~~~~~~~~~~~G~l~~~~r~~~~~~~~~~~~S~D~G~tWs~~~~~~~~~~~~~~~~~~~~~g~~~lv~~~~~r~~l~~~ 266 (321)
.+..+.++.++++.. .+.+| +|.|+|+||+.... + ...+-..+.+.++|++++|... +. ++
T Consensus 108 -----~i~~l~~~~~~l~~~----~G~iy--~T~DgG~tW~~~~~-~--~~gs~~~~~r~~dG~~vavs~~---G~--~~ 168 (302)
T PF14870_consen 108 -----GITALGDGSAELAGD----RGAIY--RTTDGGKTWQAVVS-E--TSGSINDITRSSDGRYVAVSSR---GN--FY 168 (302)
T ss_dssp -----EEEEEETTEEEEEET----T--EE--EESSTTSSEEEEE--S------EEEEEE-TTS-EEEEETT---SS--EE
T ss_pred -----EEEEcCCCcEEEEcC----CCcEE--EeCCCCCCeeEccc-C--CcceeEeEEECCCCcEEEEECc---cc--EE
Confidence 344556666655432 25565 58999999987442 1 1111234567889998888753 32 45
Q ss_pred EEcCCCCC-CCcce
Q 020796 267 LSKDDGDS-WHDAL 279 (321)
Q Consensus 267 ~S~D~G~t-W~~~~ 279 (321)
.|.|.|.+ |.+..
T Consensus 169 ~s~~~G~~~w~~~~ 182 (302)
T PF14870_consen 169 SSWDPGQTTWQPHN 182 (302)
T ss_dssp EEE-TT-SS-EEEE
T ss_pred EEecCCCccceEEc
Confidence 56666754 76654
No 13
>COG4409 NanH Neuraminidase (sialidase) [Carbohydrate transport and metabolism]
Probab=98.96 E-value=1.1e-07 Score=90.08 Aligned_cols=142 Identities=18% Similarity=0.242 Sum_probs=87.7
Q ss_pred EEEEECCCCceeEEeeceecCCCCcceeeeeEEEcCCCeEEEEEeecCCCCcEEEEEeccCCcCCCCCccCCCC-CCCCc
Q 020796 162 WMEVTVDAGRSWRKYGPIYIPNESLSVIQPVPFHTANRTLRVLMRSFNGIGRVCMSESCDGGLTWSYAKPTQLL-NPNSG 240 (321)
Q Consensus 162 ~~~~S~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~~~r~~~~~~~~~~~~S~D~G~tWs~~~~~~~~-~~~~~ 240 (321)
...+|+|+|++|+... .+++.... ..+..++++.+|.+.++.|... +.+.++.|.|+|+||+.+.-.+.. ++..+
T Consensus 546 ~~~~sDd~~~~sq~sv-~~i~~~~~-saeaa~vel~~~~~~~f~Rt~~--~~~~Y~~skd~G~tWs~~~y~~~~~n~~~g 621 (728)
T COG4409 546 YNKLSDDGGANSQVSV-TPIPSSTQ-SAEAAMVELSKGKIQAFGRTDQ--GKIAYRTSKDGGETWSVDKYFSYGGNVSYG 621 (728)
T ss_pred ceeeecCCCCcceeee-eecCcccc-chhHHHHHhccchhhhhhhhcc--cceeEEEeccCCeeeehhhhccccCCccce
Confidence 3466788888888763 22222211 2344667888888888888764 457778899999999976543211 11111
Q ss_pred -----eeEEEcCCCcEEEE-EeCC-------CCCeEEEEEEcCCCCCCCcceeecccCCCceeceEEEEccCCeEEEEEE
Q 020796 241 -----IDGVKLKDGRLLLA-YNTV-------SRGVLKVALSKDDGDSWHDALTLEENLAMEFSYPAVIQASDGSVHITYT 307 (321)
Q Consensus 241 -----~~~~~~~~g~~~lv-~~~~-------~r~~l~~~~S~D~G~tW~~~~~l~~~~~~~~~yp~~~~~~dg~l~v~y~ 307 (321)
+....+.|+..+++ ..+. .|..|.+.-|.|++.+|..+.-+.- +...+.|..+.+++.-...+.++
T Consensus 622 t~~Ssis~~~~~D~~~av~~~~pn~~~g~~~g~~~Lglin~~d~~~~wky~~dv~y-~~~~~~ys~i~~l~~~~~~~~~e 700 (728)
T COG4409 622 TQYSSISYRQLGDGEHAVIVSTPNGNIGGKDGRYRLGLINSSDNPIDWKYHQDVDY-KIGGYAYSYILELDNEKQGTPFE 700 (728)
T ss_pred eeeeeeeeeccCCcceEEEEecCCCCcccccceEEeeeeeccCCcceeeeeeeccc-ccCceEeeeeecCCchhccceee
Confidence 22234556655554 4443 3556666777899999998853332 23467888888887655544444
Q ss_pred e
Q 020796 308 Y 308 (321)
Q Consensus 308 ~ 308 (321)
.
T Consensus 701 ~ 701 (728)
T COG4409 701 K 701 (728)
T ss_pred e
Confidence 3
No 14
>PTZ00334 trans-sialidase; Provisional
Probab=98.89 E-value=7.9e-08 Score=93.43 Aligned_cols=172 Identities=16% Similarity=0.142 Sum_probs=105.5
Q ss_pred CccEEccCCeEEEeeecccCCCC-cEEEEEECCCCceeEEeeceecCCCCcceeeeeEEEcCCCeEEEEEeecCCCCcEE
Q 020796 137 NKPILLENGLLLCGSSVESWNSW-GSWMEVTVDAGRSWRKYGPIYIPNESLSVIQPVPFHTANRTLRVLMRSFNGIGRVC 215 (321)
Q Consensus 137 ~~~~~~~~G~~~~~~~~~~~~~~-~~~~~~S~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~~~r~~~~~~~~~ 215 (321)
+..+++.||.+++|......++. ...+++|+|+|. |..+... + ..+|.+|.+++.++|+|+|+.+...+..++
T Consensus 263 GSGI~medGTLVFPv~a~~~~g~~vslIiYS~d~g~-W~ls~g~--s--~~gC~~P~I~EWe~gkLlM~t~C~dG~RrV- 336 (780)
T PTZ00334 263 GSGVQMKDGTLVFPVEGTKKDGKAVSLIIYSSATES-GNLSKGM--S--ADGCSDPSVVEWKEGKLMMMTACDDGRRRV- 336 (780)
T ss_pred cCeEEecCCeEEEEEEEEcCCCCEEEEEEEecCCCC-eEEcCCC--C--CCCCCCCEEEEEcCCeEEEEEEeCCCCEEE-
Confidence 45688999999998654322232 346788999986 9865422 1 247899999999889999988776533344
Q ss_pred EEEeccCCcCCCCCccCC------C-----CCCCCceeEEEcCCCcEEEEEeC-C-------CCCeEEEEEEcCCCCCCC
Q 020796 216 MSESCDGGLTWSYAKPTQ------L-----LNPNSGIDGVKLKDGRLLLAYNT-V-------SRGVLKVALSKDDGDSWH 276 (321)
Q Consensus 216 ~~~S~D~G~tWs~~~~~~------~-----~~~~~~~~~~~~~~g~~~lv~~~-~-------~r~~l~~~~S~D~G~tW~ 276 (321)
..|.|.|.||+....+- . +...+.+-.+. .+++-+|++.. . .+..|.+|++ |+.+.+.
T Consensus 337 -YES~DmG~tWtEAlGTLsrVW~ns~~~~~~~~~~~~iTat-Ie~r~VML~T~p~y~~~~~~~~~~L~LWlT-Dn~ri~~ 413 (780)
T PTZ00334 337 -YESGDKGDSWTEALGTLSRVWGNKQKGNEKGVGSGFSTAT-IENRDVMLVTLPVYSNRKGKEKGELHLWLT-DNTHIVD 413 (780)
T ss_pred -EEECCCCCChhhCCCccceeeccCCCCCCCCCCCccEEEE-ECCCEEEEEecccccCcccccccceeEEEe-cCCeEEE
Confidence 56899999999865320 0 11112222222 25777777642 1 2567888886 4444443
Q ss_pred cceeecccCCCceeceEEEEcc-------CCeEEEEEEeCC------CeeEEEEeCC
Q 020796 277 DALTLEENLAMEFSYPAVIQAS-------DGSVHITYTYNR------TQIKHVVLLP 320 (321)
Q Consensus 277 ~~~~l~~~~~~~~~yp~~~~~~-------dg~l~v~y~~~~------~~i~~~~~~~ 320 (321)
---+-.+. +..+..|.... ++.|+++|+..+ ..|-.++||+
T Consensus 414 vGpvs~d~---~~~aSsLLY~~~~~~~~~~~~L~~LyEk~~~~~~~s~~i~~~rLTe 467 (780)
T PTZ00334 414 IGPVSGDD---DAAASSLLYKSAGSGNNNNERLIALYEKKKGGGESSLGMVSVRLTA 467 (780)
T ss_pred eccccccc---cchhhhheeeccccCCCcccceEEEeeeccCCCCccceEEeehhHH
Confidence 22111111 23455565532 237999998643 2677888775
No 15
>PF13859 BNR_3: BNR repeat-like domain; PDB: 3B69_A.
Probab=98.83 E-value=2.5e-07 Score=82.03 Aligned_cols=192 Identities=19% Similarity=0.219 Sum_probs=99.8
Q ss_pred eEEEEeCCCcEEEEEEeccc----cCCceeEEEEecCCCCCCCCCccCCCCCCC--C--CCCccEEccCCeEEEe--eec
Q 020796 84 PVLFKLPSNGLLLFYKIGQE----VQKWSGCMKRSYNKGVTWSEREQLPPGILG--P--SKNKPILLENGLLLCG--SSV 153 (321)
Q Consensus 84 p~l~~~~~G~l~l~~~~~~~----~~~~~~~~~~S~D~G~TWs~~~~l~~~~~g--~--~~~~~~~~~~G~~~~~--~~~ 153 (321)
|.|+.. +|.|+++....-. .........++.|+|.||+.+..+...... . ...+..+...+.||+- .|.
T Consensus 2 PSLV~v-gGvv~AvAEa~~~~~~~~~~~~ias~~~~~~g~tw~~~~~~~~~~~~~~~v~v~rPTtvvkgn~IymLvG~y~ 80 (310)
T PF13859_consen 2 PSLVEV-GGVVFAVAEAQCKKSNDSGFTDIASEYSTDNGETWKAEVAVLNDDGSKKRVDVSRPTTVVKGNKIYMLVGSYS 80 (310)
T ss_dssp EEEEEE-TTEEEEEEEEESS-S-SSS-EEEEEEEESSSSSS-EEEEEE----SS-TT-EEEEEEEEEETTEEEEEEEEES
T ss_pred CCEEEE-CCEEEEEEEEEEccCCCCCceeEEEeEeeccccccccceeeecccccccccccceeeeeecceeEEEEEEEEe
Confidence 778766 8888887664311 122234456799999999988754321110 0 1111223345666553 233
Q ss_pred ccC--CCCcEEEEEECCCCceeEEeeceecCCCC--cceee--eeEEEcCCCeEEEEEeecC--CCC-cEEEEEeccCCc
Q 020796 154 ESW--NSWGSWMEVTVDAGRSWRKYGPIYIPNES--LSVIQ--PVPFHTANRTLRVLMRSFN--GIG-RVCMSESCDGGL 224 (321)
Q Consensus 154 ~~~--~~~~~~~~~S~D~G~tW~~~~~~~~~~~~--~~~~~--~~~~~~~~G~l~~~~r~~~--~~~-~~~~~~S~D~G~ 224 (321)
+.. ..+...+..|+|+|++|..+..+.-.... ..++. -+-+.+.||+|+.-..... +.. ..++.+|.|+|+
T Consensus 81 ~~~~~~~~~llLvks~~~g~~W~~~~~l~~~~~~~~~~figgGGSGV~m~dGTLVFPv~a~~~~~~~~~SlIiYS~d~g~ 160 (310)
T PF13859_consen 81 RSAGADDWGLLLVKSTDGGIKWGDTKSLPSTSFQSWKQFIGGGGSGVVMEDGTLVFPVQATKKNGDGTVSLIIYSTDDGK 160 (310)
T ss_dssp S--SSTTEEEEEEEEESSSSEE---EE-GGGS-EEEEEEEE-SEE-EE-TTS-EEEEEEEEETT---EEEEEEEESSTTS
T ss_pred ccccccccceeeeeccCCcceeeecccCCchhccccceeecCCCCceEEcCCCEEEEEeeeccCccceEEEEEEECCCcc
Confidence 211 24567788999999999987644211100 01111 1234678999887665432 222 346678999999
Q ss_pred CCCCCccCCCCCCCCceeEEEcCCCcEEEEEeCCCCCeEEEEEEcCCCCCCCcc
Q 020796 225 TWSYAKPTQLLNPNSGIDGVKLKDGRLLLAYNTVSRGVLKVALSKDDGDSWHDA 278 (321)
Q Consensus 225 tWs~~~~~~~~~~~~~~~~~~~~~g~~~lv~~~~~r~~l~~~~S~D~G~tW~~~ 278 (321)
+|..+..+. +.-+..+.++.-.+|+|+|+.... ...-.++.|.|-|.||++.
T Consensus 161 ~W~lskg~s-~~gC~~psv~EWe~gkLlM~~~c~-~g~rrVYeS~DmG~tWtea 212 (310)
T PF13859_consen 161 TWKLSKGMS-PAGCSDPSVVEWEDGKLLMMTACD-DGRRRVYESGDMGTTWTEA 212 (310)
T ss_dssp S-EE-S-----TT-EEEEEEEE-TTEEEEEEE-T-TS---EEEESSTTSS-EE-
T ss_pred ceEeccccC-CCCcceEEEEeccCCeeEEEEecc-cceEEEEEEcccceehhhc
Confidence 999765432 233344566766789999997643 1223689999999999874
No 16
>cd08984 GH43_5 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-1,4-xylosidase (xylan 1,4-beta-xylosidase; EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanase and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially e
Probab=98.77 E-value=2.8e-06 Score=75.60 Aligned_cols=217 Identities=16% Similarity=0.173 Sum_probs=127.5
Q ss_pred CCCeEEEEeC-CCcEEEEEEeccc--c---CCc----eeEEEEecCCCCCCCCCccCCCC-C----CCCCCCccEEccCC
Q 020796 81 MWNPVLFKLP-SNGLLLFYKIGQE--V---QKW----SGCMKRSYNKGVTWSEREQLPPG-I----LGPSKNKPILLENG 145 (321)
Q Consensus 81 ~~~p~l~~~~-~G~l~l~~~~~~~--~---~~~----~~~~~~S~D~G~TWs~~~~l~~~-~----~g~~~~~~~~~~~G 145 (321)
..+|.++..+ +|+.+|+|+.... . ..| ...++.|+|++.+|+....+... . .....+. +...+|
T Consensus 11 ~~DP~i~~~~~~~~~~~~yT~~~~~~~~~~~~w~~~~~i~~a~S~D~l~~W~~~g~~~~~~~~~~~~~~WAP~-v~~~~G 89 (294)
T cd08984 11 AADPTIIYNRETKEWWMFYTNRRANVPTPGVAWVHGTDIGVASSKDGGATWTYRGTADGLEFECGRNTFWAPE-VVWHGG 89 (294)
T ss_pred CCCCEEEEeCCCCEEEEEEccccCcCCCCCcccCcCceEEEEEeCCCCCCCEEeeeeccCCCCCcccceeCce-EEEECC
Confidence 6789988775 5678999863110 0 111 24578888879999866543211 1 1112222 334578
Q ss_pred eEEEeeeccc------CCCCcEEEEEECCCCceeEEeeceecCCCCcceeeeeEEEcCCCeEEEEEeecCCCCcEEEEEe
Q 020796 146 LLLCGSSVES------WNSWGSWMEVTVDAGRSWRKYGPIYIPNESLSVIQPVPFHTANRTLRVLMRSFNGIGRVCMSES 219 (321)
Q Consensus 146 ~~~~~~~~~~------~~~~~~~~~~S~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~~~r~~~~~~~~~~~~S 219 (321)
+.++...... .....+.++.|+| ..+|+...++..+ ..+++.+.++...+|++++++........++++.|
T Consensus 90 ~y~myys~~~~~~~~~~~~~~i~~a~S~D-l~~w~~~~~~~~~--~~~~iD~~vf~~~dg~~yl~y~~~~~~~~~~~a~s 166 (294)
T cd08984 90 VYHMYVTYIPGVPPDWGGPRRIVHYTSPN-LWDWTFVGRVDLD--SDRVIDACVFKLPDGRWRMWYKDERRGSTTYAADS 166 (294)
T ss_pred EEEEEEEecCCCCcccCCCcEEEEEECCC-cCcceECCccccC--CCCcEEeEEEEeCCCEEEEEEECCCCCeEEEEEEC
Confidence 8755422111 1123566778887 5789976644222 23567788887777999999865432345678888
Q ss_pred ccCCcCCCCCccCCCCC-CCCceeEEEcCCCcEEEEEeCCCCCeEEEEEEcCCCCCCCcce-eecccC-----CCceece
Q 020796 220 CDGGLTWSYAKPTQLLN-PNSGIDGVKLKDGRLLLAYNTVSRGVLKVALSKDDGDSWHDAL-TLEENL-----AMEFSYP 292 (321)
Q Consensus 220 ~D~G~tWs~~~~~~~~~-~~~~~~~~~~~~g~~~lv~~~~~r~~l~~~~S~D~G~tW~~~~-~l~~~~-----~~~~~yp 292 (321)
.| +.+|+..... ++. ...++.+.+ .+|+.+|++.. ...+.++.|. +-..|++.. ++.... +...++|
T Consensus 167 ~D-~~~w~~~~~~-i~~~~~EgP~v~k-~~g~yym~~~~--~~g~~~~~S~-D~~~W~~~~~~l~~~~~~~~~~~~~~H~ 240 (294)
T cd08984 167 ED-LYHWTVEGPV-LGDRPHEGPNVFR-WKGYYWMIIDE--WKGLGVYRSK-DAENWERQGGILLKPGTRPDDGAKGRHA 240 (294)
T ss_pred CC-CCEEEeCCcc-ccCCCCCCCCeeE-ECCEEEEEEcC--CceEEEEECC-ChhhcEECCeeeccCCCCccccccccCC
Confidence 88 7889874321 111 122344455 36888888743 2235666665 466998754 333211 1234788
Q ss_pred EEEEccCCeEEEEEEe
Q 020796 293 AVIQASDGSVHITYTY 308 (321)
Q Consensus 293 ~~~~~~dg~l~v~y~~ 308 (321)
.+++.+ |+.+++|-.
T Consensus 241 ~i~~~~-~~~y~~Yh~ 255 (294)
T cd08984 241 DVVVTG-DRAYIFYFT 255 (294)
T ss_pred cEEEeC-CEEEEEEEe
Confidence 999855 588888865
No 17
>COG4447 Uncharacterized protein related to plant photosystem II stability/assembly factor [General function prediction only]
Probab=98.65 E-value=1.5e-06 Score=73.67 Aligned_cols=234 Identities=16% Similarity=0.146 Sum_probs=120.5
Q ss_pred eeEEecCCCCCCCccccceEEEecCCcEEEEEecCCCCCC--CCcEEEEEEeCCC-CcCCcEEccCCCCCCCCCeEEEEe
Q 020796 13 EEFTFPANSAPFKSCHASTIVEVDKGHFLVAYFGGSCEGA--PDVKIWLQTFKDG-RWQSPIIADEEPNVPMWNPVLFKL 89 (321)
Q Consensus 13 ~~~~f~~~~~~~~~~~~p~l~~~~~g~l~~~~~~~~~~g~--~~~~i~~s~s~~G-tWs~~~~~~~~~~~~~~~p~l~~~ 89 (321)
...|++..+. .....+.+..+.-..+..+.|.+. +|. ++..+++.+.++| ||...- ....+. .....+.+.+
T Consensus 63 rgtiletdd~--g~tw~qal~~~gr~~f~sv~f~~~-egw~vGe~sqll~T~DgGqsWARi~-~~e~~e-g~~~sI~f~d 137 (339)
T COG4447 63 RGTILETDDG--GITWAQALDFLGRHAFHSVSFLGM-EGWIVGEPSQLLHTTDGGQSWARIP-LSEKLE-GFPDSITFLD 137 (339)
T ss_pred cceEEEecCC--cccchhhhchhhhhheeeeeeecc-cccccCCcceEEEecCCCcchhhch-hhcCCC-CCcceeEEec
Confidence 3455665432 233456666554456777777764 332 2333555666666 998632 222222 1222344444
Q ss_pred C-CCcEEEEEEeccccCCceeEEEEecCCCCCCCCCccCCCCCCCCCCCccEEccCCeEEEeeecccCCCCcEEEEEECC
Q 020796 90 P-SNGLLLFYKIGQEVQKWSGCMKRSYNKGVTWSEREQLPPGILGPSKNKPILLENGLLLCGSSVESWNSWGSWMEVTVD 168 (321)
Q Consensus 90 ~-~G~l~l~~~~~~~~~~~~~~~~~S~D~G~TWs~~~~l~~~~~g~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~S~D 168 (321)
+ .|.++ +. .+.+..++|+|++|+....-..+.. ..+.+..-.||..+... .+..++.|-+
T Consensus 138 ~q~g~m~---------gd-~Gail~T~DgGk~Wk~l~e~~v~~~--~~n~ia~s~dng~vaVg-------~rGs~f~T~~ 198 (339)
T COG4447 138 DQRGEML---------GD-QGAILKTTDGGKNWKALVEKAVGLA--VPNEIARSADNGYVAVG-------ARGSFFSTWG 198 (339)
T ss_pred chhhhhh---------cc-cceEEEecCCcccHhHhcccccchh--hhhhhhhhccCCeEEEe-------cCcceEecCC
Confidence 2 23221 11 3468899999999987553221211 11111122345533321 1235777888
Q ss_pred CCceeEEeeceecCCCCcceeeeeEEEcCCCeEEEEEeecCCCCcEEEEEeccCCcCCCCCcc-CCCC-CCCCceeEEEc
Q 020796 169 AGRSWRKYGPIYIPNESLSVIQPVPFHTANRTLRVLMRSFNGIGRVCMSESCDGGLTWSYAKP-TQLL-NPNSGIDGVKL 246 (321)
Q Consensus 169 ~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~~~r~~~~~~~~~~~~S~D~G~tWs~~~~-~~~~-~~~~~~~~~~~ 246 (321)
-|++|-.+.. .+. ....|.... .++|.+-++.|... +.. +.+.++|..|++... .+.. .+-+-......
T Consensus 199 aGqt~~~~~g---~~s-~~~letmg~-adag~~g~la~g~q--g~~--f~~~~~gD~wsd~~~~~~~g~~~~Gl~d~a~~ 269 (339)
T COG4447 199 AGQTVWLPHG---RNS-SRRLETMGL-ADAGSKGLLARGGQ--GDQ--FSWVCGGDEWSDQGEPVNLGRRSWGLLDFAPR 269 (339)
T ss_pred CCccEEeccC---CCc-cchhccccc-ccCCccceEEEccc--cce--eecCCCcccccccccchhcccCCCcccccccc
Confidence 9999876531 111 112232222 35676555555532 333 457899999997532 1111 01111223334
Q ss_pred CCCcEEEEEeCCCCCeEEEEEEcCCCCCCCcceeeccc
Q 020796 247 KDGRLLLAYNTVSRGVLKVALSKDDGDSWHDALTLEEN 284 (321)
Q Consensus 247 ~~g~~~lv~~~~~r~~l~~~~S~D~G~tW~~~~~l~~~ 284 (321)
.+++++++.... .+..|.|+|++|++-.-+.+.
T Consensus 270 a~~~v~v~G~gG-----nvl~StdgG~t~skd~g~~er 302 (339)
T COG4447 270 APPEVWVSGIGG-----NVLASTDGGTTWSKDGGVEER 302 (339)
T ss_pred CCCCeEEeccCc-----cEEEecCCCeeEeccCChhhh
Confidence 567888876432 467799999999976655543
No 18
>cd08994 GH43_like_2 Glycosyl hydrolase 43-like family consists of hypothetical proteins. This subfamily mostly contains uncharacterized proteins similar to glycosyl hydrolase family 43 (GH43) which includes enzymes with beta-xylosidase (EC 3.2.1.37) and alpha-L-arabinofuranosidase (EC 3.2.1.55) and possibly bifunctional xylosidase/arabinofuranosidase activities. GH43 are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, f
Probab=98.61 E-value=5.2e-05 Score=67.30 Aligned_cols=203 Identities=14% Similarity=0.141 Sum_probs=116.6
Q ss_pred CccccceEEEecCCcEEEEEecCCC-CC----CCCcEEEEEEeCC--CCcCCcEE-ccCCCC-----CCCCCeEEEEeCC
Q 020796 25 KSCHASTIVEVDKGHFLVAYFGGSC-EG----APDVKIWLQTFKD--GRWQSPII-ADEEPN-----VPMWNPVLFKLPS 91 (321)
Q Consensus 25 ~~~~~p~l~~~~~g~l~~~~~~~~~-~g----~~~~~i~~s~s~~--GtWs~~~~-~~~~~~-----~~~~~p~l~~~~~ 91 (321)
..++.|.++..++|+.++.|..-.. .+ .....|.++.|++ |.|..... +.+.+. ...++|.++.. +
T Consensus 11 ~~~w~~~vi~~~~g~y~lfy~~~~~~~~~~~~~~~~~i~~A~S~~~~g~w~~~g~vl~~~~~~~wd~~~~~~P~vi~~-~ 89 (291)
T cd08994 11 YSVWGGSIIKGPDGKYHLFASRWPEGLGFHGWLPYSEIVHAVSDTPEGPYTFQEVVLPGRGGGYWDARTTHNPTIKRF-D 89 (291)
T ss_pred eEEEecceEECCCCcEEEEEEEccCCCCCCcccccceEEEEEcCCCCCCcEEeeeEcCCCCCCcccCCCccCCeEEEE-C
Confidence 7788999999998988887654221 11 0123477777775 58986443 333221 24567887665 6
Q ss_pred CcEEEEEEeccc-------cCCceeEEEEecCCCCCCCC-Ccc-CCCCCC-----CCCCCccEEccCCeEEEeeecccCC
Q 020796 92 NGLLLFYKIGQE-------VQKWSGCMKRSYNKGVTWSE-REQ-LPPGIL-----GPSKNKPILLENGLLLCGSSVESWN 157 (321)
Q Consensus 92 G~l~l~~~~~~~-------~~~~~~~~~~S~D~G~TWs~-~~~-l~~~~~-----g~~~~~~~~~~~G~~~~~~~~~~~~ 157 (321)
|+.+++|..... .......+..|++-...|+. ..+ +.++.. +.....++...+|++++........
T Consensus 90 g~yyl~Y~~~~~~~~~~~~~~~~~ig~a~s~~~~g~w~~~~~pvl~~~~~~~~~~~~~~p~v~~~~~g~~~m~y~g~~~~ 169 (291)
T cd08994 90 GKYYLYYIGNTDPGPRPGHRNNQRIGVAVSDSLDGPWKRSDQPILEPRPGGWDNLITSNPAVTRRPDGSYLLVYKGGTYN 169 (291)
T ss_pred CEEEEEEEcccCCcccccCCCCceEEEEEeCCCCCCcEECCCceecCCCCccccccccCCCeEEeCCCCEEEEEeccccC
Confidence 999999985321 11223457788774458976 222 222211 1122223333378765542221111
Q ss_pred ----CCcEEEEEECCCCceeEEeeceec--CCCCcceeeeeEEEcCCCeEEEEEeecC-----CCCcEEEEEeccCCcCC
Q 020796 158 ----SWGSWMEVTVDAGRSWRKYGPIYI--PNESLSVIQPVPFHTANRTLRVLMRSFN-----GIGRVCMSESCDGGLTW 226 (321)
Q Consensus 158 ----~~~~~~~~S~D~G~tW~~~~~~~~--~~~~~~~~~~~~~~~~~G~l~~~~r~~~-----~~~~~~~~~S~D~G~tW 226 (321)
.....+++|+|....|+......+ +........|.+... +|+.+|++.... ..+.+.+++|.| |.+|
T Consensus 170 ~~~~~~~~gla~s~d~~g~~~~~~~~~v~~~~~~~~~~dP~V~~~-~g~yym~~~~~~~~~~~~~~~i~~a~S~D-g~~W 247 (291)
T cd08994 170 PTKGNRKYGVAIADSPTGPYTKVSGPPFIEPGDNGNTEDPFVWYD-KGQFHMIVKDMLGYVTGEKGGGAYFRSKD-GIHW 247 (291)
T ss_pred CCCCcEEEEEEEeCCCCCCCEECCCCccccCCCCCceeCceEEEe-CCEEEEEEeecccCcCCCCceEEEEECCC-CCCc
Confidence 123567888887556987531111 112223345777765 489999886543 245788888977 8899
Q ss_pred CCCc
Q 020796 227 SYAK 230 (321)
Q Consensus 227 s~~~ 230 (321)
+...
T Consensus 248 ~~~~ 251 (291)
T cd08994 248 KLAP 251 (291)
T ss_pred eecC
Confidence 8753
No 19
>cd08984 GH43_5 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-1,4-xylosidase (xylan 1,4-beta-xylosidase; EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanase and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially e
Probab=98.55 E-value=4.4e-05 Score=67.89 Aligned_cols=220 Identities=15% Similarity=0.127 Sum_probs=119.8
Q ss_pred CCccccceEEEecC-CcEEEEEecCCCCCC-------CCcEEEEEEeCC-C-CcCCcEEccC---CC-CCCCCCeEEEEe
Q 020796 24 FKSCHASTIVEVDK-GHFLVAYFGGSCEGA-------PDVKIWLQTFKD-G-RWQSPIIADE---EP-NVPMWNPVLFKL 89 (321)
Q Consensus 24 ~~~~~~p~l~~~~~-g~l~~~~~~~~~~g~-------~~~~i~~s~s~~-G-tWs~~~~~~~---~~-~~~~~~p~l~~~ 89 (321)
+.-++.|.|+..++ |++++.|..-+.... ....|.+.+|+| + +|+....+.. .. ....+.|.++..
T Consensus 8 ~~g~~DP~i~~~~~~~~~~~~yT~~~~~~~~~~~~w~~~~~i~~a~S~D~l~~W~~~g~~~~~~~~~~~~~~WAP~v~~~ 87 (294)
T cd08984 8 YDGAADPTIIYNRETKEWWMFYTNRRANVPTPGVAWVHGTDIGVASSKDGGATWTYRGTADGLEFECGRNTFWAPEVVWH 87 (294)
T ss_pred CCCCCCCEEEEeCCCCEEEEEEccccCcCCCCCcccCcCceEEEEEeCCCCCCCEEeeeeccCCCCCcccceeCceEEEE
Confidence 34468899998874 577776643111111 113588899998 8 9987654321 11 234678988765
Q ss_pred CCCcEEEEEEecccc-----CCceeEEEEecCCCCCCCCCccCCCCCCCCCCCccEEccCCeEEEeeecccCCCCcEEEE
Q 020796 90 PSNGLLLFYKIGQEV-----QKWSGCMKRSYNKGVTWSEREQLPPGILGPSKNKPILLENGLLLCGSSVESWNSWGSWME 164 (321)
Q Consensus 90 ~~G~l~l~~~~~~~~-----~~~~~~~~~S~D~G~TWs~~~~l~~~~~g~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~ 164 (321)
+|+-+|+|+..... +.....+..|+| ..+|+....+.....+.+.+.++...+|++++....+. .+....+.
T Consensus 88 -~G~y~myys~~~~~~~~~~~~~~i~~a~S~D-l~~w~~~~~~~~~~~~~iD~~vf~~~dg~~yl~y~~~~-~~~~~~~a 164 (294)
T cd08984 88 -GGVYHMYVTYIPGVPPDWGGPRRIVHYTSPN-LWDWTFVGRVDLDSDRVIDACVFKLPDGRWRMWYKDER-RGSTTYAA 164 (294)
T ss_pred -CCEEEEEEEecCCCCcccCCCcEEEEEECCC-cCcceECCccccCCCCcEEeEEEEeCCCEEEEEEECCC-CCeEEEEE
Confidence 79999999863221 112344677887 57897655432111222333344445577665432221 22334566
Q ss_pred EECCCCceeEEeeceecCCCCcceeeeeEEEcCCCeEEEEEeecCCCCcEEEEEeccCCcCCCCCccC-CCC------CC
Q 020796 165 VTVDAGRSWRKYGPIYIPNESLSVIQPVPFHTANRTLRVLMRSFNGIGRVCMSESCDGGLTWSYAKPT-QLL------NP 237 (321)
Q Consensus 165 ~S~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~~~r~~~~~~~~~~~~S~D~G~tWs~~~~~-~~~------~~ 237 (321)
.|+| +.+|+...++ +... ..-.|.++.. +|..++++.. ...+.+.+|+|. .+|+....+ ..+ +.
T Consensus 165 ~s~D-~~~w~~~~~~-i~~~--~~EgP~v~k~-~g~yym~~~~---~~g~~~~~S~D~-~~W~~~~~~l~~~~~~~~~~~ 235 (294)
T cd08984 165 DSED-LYHWTVEGPV-LGDR--PHEGPNVFRW-KGYYWMIIDE---WKGLGVYRSKDA-ENWERQGGILLKPGTRPDDGA 235 (294)
T ss_pred ECCC-CCEEEeCCcc-ccCC--CCCCCCeeEE-CCEEEEEEcC---CceEEEEECCCh-hhcEECCeeeccCCCCccccc
Confidence 6665 7899976533 2111 1123666665 5788777532 123556778774 499863321 111 11
Q ss_pred CCc-eeEEEcCCCcEEEEEe
Q 020796 238 NSG-IDGVKLKDGRLLLAYN 256 (321)
Q Consensus 238 ~~~-~~~~~~~~g~~~lv~~ 256 (321)
..+ ..++.. +|+.+++|.
T Consensus 236 ~~~H~~i~~~-~~~~y~~Yh 254 (294)
T cd08984 236 KGRHADVVVT-GDRAYIFYF 254 (294)
T ss_pred cccCCcEEEe-CCEEEEEEE
Confidence 112 234443 478888885
No 20
>cd08772 GH43_62_32_68 Glycosyl hydrolase families: GH43, GH62, GH32, GH68. Members of the glycosyl hydrolase families 32, 43, 62 and 68 (GH32, GH43, GH62, GH68) all possess 5-bladed beta-propeller domains and comprise clans F and J, as classified by the carbohydrate-active enzymes database (CAZY). Clan F consists of families GH43 and GH62. GH43 includes beta-xylosidases, beta-xylanases, alpha-L-arabinases, and alpha-L-arabinofuranosidases, using aryl-glycosides as substrates, while family GH62 contains alpha-L-arabinofuranosidases (EC 3.2.1.55) that specifically cleave either alpha-1,2 or alpha-1,3-L-arabinofuranose sidechains from xylans. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Clan J consists of families GH32 and GH68. GH32
Probab=98.46 E-value=0.00011 Score=64.70 Aligned_cols=222 Identities=19% Similarity=0.215 Sum_probs=122.7
Q ss_pred CeEEEEeCCCcEEEEEEeccccCCceeEEEEecCCCCCCCCCccCC-----C-C---CCCCCCCccEEccCCeEEEeeec
Q 020796 83 NPVLFKLPSNGLLLFYKIGQEVQKWSGCMKRSYNKGVTWSEREQLP-----P-G---ILGPSKNKPILLENGLLLCGSSV 153 (321)
Q Consensus 83 ~p~l~~~~~G~l~l~~~~~~~~~~~~~~~~~S~D~G~TWs~~~~l~-----~-~---~~g~~~~~~~~~~~G~~~~~~~~ 153 (321)
+|.++.. +|+.+|+++.....+.....+.+|+| +.+|+....+. + . ..+...+.++...+|++++....
T Consensus 2 DP~i~~~-~g~yyl~~~~~~~~~~~~~~~~~S~D-l~~W~~~~~~~~~~~~~~~~~~~~~~wap~v~~~~~g~~~l~yt~ 79 (286)
T cd08772 2 DPNLIKY-NGTYYIFFSGDDKNGNPGIAHATSKD-LVNWTDHPVALVWWARRGGPKDSGGIWAPSIVYIENGKFYLYYTD 79 (286)
T ss_pred CCeEEEE-CCEEEEEEEccCCCCCceEEEEECCC-cCcceECCccchhhcccCCCCCCCcEecceEEEcCCCCEEEEEEe
Confidence 5776554 68999988753211122234778877 78998766432 1 1 11223334444444876543221
Q ss_pred cc--CCCCcEEEEEECCCCceeEEee--ceec----CCCCcceeeeeEEEcCCCeEEEEEeecC--CCCcEEEEEeccCC
Q 020796 154 ES--WNSWGSWMEVTVDAGRSWRKYG--PIYI----PNESLSVIQPVPFHTANRTLRVLMRSFN--GIGRVCMSESCDGG 223 (321)
Q Consensus 154 ~~--~~~~~~~~~~S~D~G~tW~~~~--~~~~----~~~~~~~~~~~~~~~~~G~l~~~~r~~~--~~~~~~~~~S~D~G 223 (321)
.. .....+.++.|+|....|+... ++.. ......++.|.++..++|+.++++.... ..+.+++++|+| +
T Consensus 80 ~~~~~~~~~i~~a~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~Dp~v~~d~dG~~y~~~~~~~~~~~~~i~~~~s~d-~ 158 (286)
T cd08772 80 VSFTKNQQTIGVATAEDGNGPWTDYIGGPVLPDNPPAADVSNFRDPFVFEDDDGKWYLVFGSGDHHNFGGIFLYESDD-D 158 (286)
T ss_pred ecCCCCceeEEEEEcCCCCCCCccccccccccCCCCccccccccCCeEEEcCCCCEEEEEccccCCCCCeEEEEEcCC-C
Confidence 11 1234677888988777777542 1111 0112345678888887799999886542 235788899987 5
Q ss_pred cCCCCCccC--CC----CCCCCceeEEEcCCCcEEEEEeCC------CCCeEEEEEEcCCCCCCCcce------eecc-c
Q 020796 224 LTWSYAKPT--QL----LNPNSGIDGVKLKDGRLLLAYNTV------SRGVLKVALSKDDGDSWHDAL------TLEE-N 284 (321)
Q Consensus 224 ~tWs~~~~~--~~----~~~~~~~~~~~~~~g~~~lv~~~~------~r~~l~~~~S~D~G~tW~~~~------~l~~-~ 284 (321)
.+|...... .. .....+..+... +|+.+|++... ....+.+++|++....|.... .... .
T Consensus 159 ~~w~~~~~~~~~~~~~~~~~~E~P~~~~~-~g~~yL~~s~~~~~~~~~~y~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 237 (286)
T cd08772 159 TTWKKGSAELLISEGEGGKQIEGPGLLKK-NGKYYLFYSINGTGRVDSTYSIGYARSESDTGPYVPKSDTSGGLSLTGGN 237 (286)
T ss_pred CCcccccceeeEeeccCCCceeccEEEEE-CCEEEEEEEcCCCcCCCCCcceEEEEccCCCCCcccCCCCCCcccccccc
Confidence 678653321 00 011112344443 58888888542 234667788876555675432 1111 1
Q ss_pred -CCCceeceEEEEccCCeEEEEEEe
Q 020796 285 -LAMEFSYPAVIQASDGSVHITYTY 308 (321)
Q Consensus 285 -~~~~~~yp~~~~~~dg~l~v~y~~ 308 (321)
...++..+.+++..+|+.+++|-.
T Consensus 238 ~~~~~~~~~~~~~~~~g~~~~~~~~ 262 (286)
T cd08772 238 DGGVGPYHAAAFNDAGGRVVLVYHA 262 (286)
T ss_pred CCCCCCCccEEEECCCCCEEEEEEe
Confidence 112344556666566777766544
No 21
>cd08994 GH43_like_2 Glycosyl hydrolase 43-like family consists of hypothetical proteins. This subfamily mostly contains uncharacterized proteins similar to glycosyl hydrolase family 43 (GH43) which includes enzymes with beta-xylosidase (EC 3.2.1.37) and alpha-L-arabinofuranosidase (EC 3.2.1.55) and possibly bifunctional xylosidase/arabinofuranosidase activities. GH43 are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, f
Probab=98.44 E-value=0.00014 Score=64.47 Aligned_cols=228 Identities=16% Similarity=0.158 Sum_probs=127.9
Q ss_pred CCCCCCCeEEEEeCCCcEEEEEEecccc---CCc----eeEEEEecCCCCCCCCCcc-CCCCCCCC-----CCCccEEcc
Q 020796 77 PNVPMWNPVLFKLPSNGLLLFYKIGQEV---QKW----SGCMKRSYNKGVTWSEREQ-LPPGILGP-----SKNKPILLE 143 (321)
Q Consensus 77 ~~~~~~~p~l~~~~~G~l~l~~~~~~~~---~~~----~~~~~~S~D~G~TWs~~~~-l~~~~~g~-----~~~~~~~~~ 143 (321)
+....+.|.++..++|+.+|||+..... ..| ...++.|+|.-..|+.... +.++..+. +..+.+...
T Consensus 9 ~~~~~w~~~vi~~~~g~y~lfy~~~~~~~~~~~~~~~~~i~~A~S~~~~g~w~~~g~vl~~~~~~~wd~~~~~~P~vi~~ 88 (291)
T cd08994 9 EDYSVWGGSIIKGPDGKYHLFASRWPEGLGFHGWLPYSEIVHAVSDTPEGPYTFQEVVLPGRGGGYWDARTTHNPTIKRF 88 (291)
T ss_pred CCeEEEecceEECCCCcEEEEEEEccCCCCCCcccccceEEEEEcCCCCCCcEEeeeEcCCCCCCcccCCCccCCeEEEE
Confidence 5667888999888889999999852211 111 2457788886567975443 33221111 122223334
Q ss_pred CCeEEEeeeccc--------CCCCcEEEEEECCCCceeEE-eeceecCC----CCcceeeeeEEEcCCCeEEEEEeecC-
Q 020796 144 NGLLLCGSSVES--------WNSWGSWMEVTVDAGRSWRK-YGPIYIPN----ESLSVIQPVPFHTANRTLRVLMRSFN- 209 (321)
Q Consensus 144 ~G~~~~~~~~~~--------~~~~~~~~~~S~D~G~tW~~-~~~~~~~~----~~~~~~~~~~~~~~~G~l~~~~r~~~- 209 (321)
+|+.++...... .....+.++.|++-...|+. ..++..+. ...+...|.++..++|+++|+++...
T Consensus 89 ~g~yyl~Y~~~~~~~~~~~~~~~~~ig~a~s~~~~g~w~~~~~pvl~~~~~~~~~~~~~~p~v~~~~~g~~~m~y~g~~~ 168 (291)
T cd08994 89 DGKYYLYYIGNTDPGPRPGHRNNQRIGVAVSDSLDGPWKRSDQPILEPRPGGWDNLITSNPAVTRRPDGSYLLVYKGGTY 168 (291)
T ss_pred CCEEEEEEEcccCCcccccCCCCceEEEEEeCCCCCCcEECCCceecCCCCccccccccCCCeEEeCCCCEEEEEecccc
Confidence 688654322111 11235778888875558988 34443221 12234567887766899999886542
Q ss_pred ----CCCcEEEEEeccCCcCCCCCccCCC--CCC---CCceeEEEcCCCcEEEEEeCC------CCCeEEEEEEcCCCCC
Q 020796 210 ----GIGRVCMSESCDGGLTWSYAKPTQL--LNP---NSGIDGVKLKDGRLLLAYNTV------SRGVLKVALSKDDGDS 274 (321)
Q Consensus 210 ----~~~~~~~~~S~D~G~tWs~~~~~~~--~~~---~~~~~~~~~~~g~~~lv~~~~------~r~~l~~~~S~D~G~t 274 (321)
....+.++.|.|....|+......+ +.. .....+.. .+|+.+|++... .+..+.++.|. ||.+
T Consensus 169 ~~~~~~~~~gla~s~d~~g~~~~~~~~~v~~~~~~~~~~dP~V~~-~~g~yym~~~~~~~~~~~~~~~i~~a~S~-Dg~~ 246 (291)
T cd08994 169 NPTKGNRKYGVAIADSPTGPYTKVSGPPFIEPGDNGNTEDPFVWY-DKGQFHMIVKDMLGYVTGEKGGGAYFRSK-DGIH 246 (291)
T ss_pred CCCCCcEEEEEEEeCCCCCCCEECCCCccccCCCCCceeCceEEE-eCCEEEEEEeecccCcCCCCceEEEEECC-CCCC
Confidence 1234677888887566976421111 111 11123344 459999998643 24566777775 5889
Q ss_pred CCcceeec--------cc---CCCceeceEEEEccCCeEEEEE
Q 020796 275 WHDALTLE--------EN---LAMEFSYPAVIQASDGSVHITY 306 (321)
Q Consensus 275 W~~~~~l~--------~~---~~~~~~yp~~~~~~dg~l~v~y 306 (321)
|+....+. ++ ......-|.+.+..||+-.++|
T Consensus 247 W~~~~~~~~~~~~~~~~~~~~~~~~~erP~v~~~~~g~~~~l~ 289 (291)
T cd08994 247 WKLAPGLAYSTTVEWTDGTTEDWGRLERPQVLLDEDGKPTYLF 289 (291)
T ss_pred ceecCcceeeeeEEcCCCcccccccccCCEEEEcCCCCEEEEe
Confidence 98765441 11 1123455777744556544444
No 22
>cd08995 GH32_Aec43_like Glycosyl hydrolase family 32. This glycosyl hydrolase family 32 (GH32) includes characterized as well as uncharacterized proteins. GH32 enzymes cleave sucrose into fructose and glucose via beta-fructofuranosidase activity, producing invert sugar that is a mixture of dextrorotatory D-glucose and levorotatory D-fructose, thus named invertase (EC 3.2.1.26). GH32 family also contains other fructofuranosidases such as inulinase (EC 3.2.1.7), exo-inulinase (EC 3.2.1.80), levanase (EC 3.2.1.65), and transfructosidases such sucrose:sucrose 1-fructosyltransferase (EC 2.4.1.99), fructan:fructan 1-fructosyltransferase (EC 2.4.1.100), sucrose:fructan 6-fructosyltransferase (EC 2.4.1.10), fructan:fructan 6G-fructosyltransferase (EC 2.4.1.243) and levan fructosyltransferases (EC 2.4.1.-). These retaining enzymes (i.e. they retain the configuration at anomeric carbon atom of the substrate) catalyze hydrolysis in two steps involving a covalent glycosyl enzyme intermediate: an a
Probab=98.41 E-value=0.00034 Score=61.68 Aligned_cols=193 Identities=15% Similarity=0.084 Sum_probs=100.6
Q ss_pred ceEEEecCCcEEEEEecCCCCCC---CCcEEEEEEeCCC-CcCCcE-EccCCC----CCCCCCeEEEEeCCCcEEEEEEe
Q 020796 30 STIVEVDKGHFLVAYFGGSCEGA---PDVKIWLQTFKDG-RWQSPI-IADEEP----NVPMWNPVLFKLPSNGLLLFYKI 100 (321)
Q Consensus 30 p~l~~~~~g~l~~~~~~~~~~g~---~~~~i~~s~s~~G-tWs~~~-~~~~~~----~~~~~~p~l~~~~~G~l~l~~~~ 100 (321)
|+++... |++++.|........ ....+...+|+|+ +|+... .+...+ ...++.|.++.. +|+++|+|+.
T Consensus 3 ~~~~~~~-G~yhlfyq~~p~~~~~~~~~~~wgha~S~Dlv~W~~~~~al~~~~~~~d~~g~~sgs~~~~-~g~~~l~YTg 80 (280)
T cd08995 3 PMPFYDD-GTFHIFYLHDPRNGPPEGLRHPWSLLTTKDLVNYEDHGEAIPRGGDEDDDDAIGTGSVIKG-EGTYHAFYTG 80 (280)
T ss_pred ccceEEC-CEEEEEEEcCCCCCCcccCCceEEEEEccCcCccEECcceecCCCCcccccCceEeEEEee-CCEEEEEEEE
Confidence 5665544 888887755433221 3345778899999 998643 333211 234667877654 6999999985
Q ss_pred cccc--CCceeEEEEecCCCCCCCCCc--cCCCCCCC----CCCCccEEcc--CCeEEEeeeccc-----CCCCcEEEEE
Q 020796 101 GQEV--QKWSGCMKRSYNKGVTWSERE--QLPPGILG----PSKNKPILLE--NGLLLCGSSVES-----WNSWGSWMEV 165 (321)
Q Consensus 101 ~~~~--~~~~~~~~~S~D~G~TWs~~~--~l~~~~~g----~~~~~~~~~~--~G~~~~~~~~~~-----~~~~~~~~~~ 165 (321)
.... ......++.|+| |.+|++.. ++.+...+ ..+.+.+... +|++++...... .....+.++.
T Consensus 81 ~~~~~~~~~~i~~A~S~D-~~~w~k~~~~pv~~~~~~~~~~~~rDP~Vf~~~~~g~y~m~~g~~~~~~~~~~~g~i~~~~ 159 (280)
T cd08995 81 HNLDGKPKQVVMHATSDD-LITWTKDPEFILIADGEGYEKNDWRDPFVFWNEEEGCYWMLLATRLLDGPYNRRGCIALFT 159 (280)
T ss_pred ECCCCCCcEEEEEEECCC-CCccEECCCCeecCCccccccCCccCCcEEEcCCCCeEEEEEEeccCCCCCCCCeEEEEEE
Confidence 3221 122356788887 58998653 22211111 1222223222 477654322111 1112344455
Q ss_pred ECCCCceeEEeeceecCCCCcceee-eeEEEcCCCeEEEEEeecCCCCcEEEEEeccCCcCCCC
Q 020796 166 TVDAGRSWRKYGPIYIPNESLSVIQ-PVPFHTANRTLRVLMRSFNGIGRVCMSESCDGGLTWSY 228 (321)
Q Consensus 166 S~D~G~tW~~~~~~~~~~~~~~~~~-~~~~~~~~G~l~~~~r~~~~~~~~~~~~S~D~G~tWs~ 228 (321)
| ++..+|+...++..+. .....| |.++.+ +|+.++++..........+.++.+-...|..
T Consensus 160 S-~Dl~~W~~~~~~~~~~-~~~~~E~P~l~~~-~g~~~L~~s~~~~~~~~~Y~~~~~~~g~~~~ 220 (280)
T cd08995 160 S-KDLKNWEYEEPFYAPG-LYFMPECPDLFKM-GDWWYLVYSEFSENRKTHYRVSKSPFGPWRA 220 (280)
T ss_pred e-CCcCcceecCceecCC-CcceeecceEEEE-CCEEEEEEEeccCCCcEEEEEeCCCCCCeEc
Confidence 5 5688998775442221 112233 677777 4777777754432233344455433233443
No 23
>cd08772 GH43_62_32_68 Glycosyl hydrolase families: GH43, GH62, GH32, GH68. Members of the glycosyl hydrolase families 32, 43, 62 and 68 (GH32, GH43, GH62, GH68) all possess 5-bladed beta-propeller domains and comprise clans F and J, as classified by the carbohydrate-active enzymes database (CAZY). Clan F consists of families GH43 and GH62. GH43 includes beta-xylosidases, beta-xylanases, alpha-L-arabinases, and alpha-L-arabinofuranosidases, using aryl-glycosides as substrates, while family GH62 contains alpha-L-arabinofuranosidases (EC 3.2.1.55) that specifically cleave either alpha-1,2 or alpha-1,3-L-arabinofuranose sidechains from xylans. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Clan J consists of families GH32 and GH68. GH32
Probab=98.41 E-value=0.00041 Score=61.00 Aligned_cols=196 Identities=12% Similarity=0.147 Sum_probs=110.5
Q ss_pred cceEEEecCCcEEEEEecCCCCCCCCcEEEEEEeCCC-CcCCcEE-cc----CC---CCCCCCCeEEEEeCCCcEEEEEE
Q 020796 29 ASTIVEVDKGHFLVAYFGGSCEGAPDVKIWLQTFKDG-RWQSPII-AD----EE---PNVPMWNPVLFKLPSNGLLLFYK 99 (321)
Q Consensus 29 ~p~l~~~~~g~l~~~~~~~~~~g~~~~~i~~s~s~~G-tWs~~~~-~~----~~---~~~~~~~p~l~~~~~G~l~l~~~ 99 (321)
.|.|+... |+.++.+..... + ....+.+.+|+|+ +|+.... +. +. .....+.|.++..++|+.+|+|+
T Consensus 2 DP~i~~~~-g~yyl~~~~~~~-~-~~~~~~~~~S~Dl~~W~~~~~~~~~~~~~~~~~~~~~~wap~v~~~~~g~~~l~yt 78 (286)
T cd08772 2 DPNLIKYN-GTYYIFFSGDDK-N-GNPGIAHATSKDLVNWTDHPVALVWWARRGGPKDSGGIWAPSIVYIENGKFYLYYT 78 (286)
T ss_pred CCeEEEEC-CEEEEEEEccCC-C-CCceEEEEECCCcCcceECCccchhhcccCCCCCCCcEecceEEEcCCCCEEEEEE
Confidence 57877654 888876644321 1 2345788999998 9997543 21 11 12357789888776699999998
Q ss_pred eccc-cCCceeEEEEecCCCCCCCCCcc--C-CC---C--CCCCCCCccEEccCCeEEEeeeccc-CCCCcEEEEEECCC
Q 020796 100 IGQE-VQKWSGCMKRSYNKGVTWSEREQ--L-PP---G--ILGPSKNKPILLENGLLLCGSSVES-WNSWGSWMEVTVDA 169 (321)
Q Consensus 100 ~~~~-~~~~~~~~~~S~D~G~TWs~~~~--l-~~---~--~~g~~~~~~~~~~~G~~~~~~~~~~-~~~~~~~~~~S~D~ 169 (321)
.... .......+..|+|....|+.... + .. . ....+-+.++...+|++++...... .....+.++.|+|.
T Consensus 79 ~~~~~~~~~~i~~a~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~Dp~v~~d~dG~~y~~~~~~~~~~~~~i~~~~s~d~ 158 (286)
T cd08772 79 DVSFTKNQQTIGVATAEDGNGPWTDYIGGPVLPDNPPAADVSNFRDPFVFEDDDGKWYLVFGSGDHHNFGGIFLYESDDD 158 (286)
T ss_pred eecCCCCceeEEEEEcCCCCCCCccccccccccCCCCccccccccCCeEEEcCCCCEEEEEccccCCCCCeEEEEEcCCC
Confidence 6422 12234568889887777775421 1 11 0 1111222233444488766532211 01235667777764
Q ss_pred CceeEEeece--ecCCCCcceee-eeEEEcCCCeEEEEEeecC-----CCCcEEEEEeccCCcCCCCC
Q 020796 170 GRSWRKYGPI--YIPNESLSVIQ-PVPFHTANRTLRVLMRSFN-----GIGRVCMSESCDGGLTWSYA 229 (321)
Q Consensus 170 G~tW~~~~~~--~~~~~~~~~~~-~~~~~~~~G~l~~~~r~~~-----~~~~~~~~~S~D~G~tWs~~ 229 (321)
.+|....+. .......+..| |.++.. +|+.++++.... ....+.+++|++....|...
T Consensus 159 -~~w~~~~~~~~~~~~~~~~~~E~P~~~~~-~g~~yL~~s~~~~~~~~~~y~~~~~~~~~~~g~~~~~ 224 (286)
T cd08772 159 -TTWKKGSAELLISEGEGGKQIEGPGLLKK-NGKYYLFYSINGTGRVDSTYSIGYARSESDTGPYVPK 224 (286)
T ss_pred -CCcccccceeeEeeccCCCceeccEEEEE-CCEEEEEEEcCCCcCCCCCcceEEEEccCCCCCcccC
Confidence 677654432 11111122333 566665 578888775432 13467788888877777654
No 24
>cd08993 GH43_DUF377 Glycosyl hydrolase family 43 containing a domain of unknown function. This subfamily has sequences similar to the glycosyl hydrolase family 43 (GH43) and contains uncharacterized proteins. GH43 proteins are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the GH43 enzymes display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller.
Probab=98.36 E-value=0.00038 Score=61.04 Aligned_cols=141 Identities=17% Similarity=0.193 Sum_probs=80.5
Q ss_pred CeEEEEeCCCcEEEEEEeccccCCceeEEEEecCCCCCCCCCc--cC-CC-CC---CCCCCCccEEccCCeEEEeeeccc
Q 020796 83 NPVLFKLPSNGLLLFYKIGQEVQKWSGCMKRSYNKGVTWSERE--QL-PP-GI---LGPSKNKPILLENGLLLCGSSVES 155 (321)
Q Consensus 83 ~p~l~~~~~G~l~l~~~~~~~~~~~~~~~~~S~D~G~TWs~~~--~l-~~-~~---~g~~~~~~~~~~~G~~~~~~~~~~ 155 (321)
||.++.. +|+.+++|+...........+.+|+| |.+|+... .+ ++ .. ...+..+-+...+|++++......
T Consensus 2 nP~v~~~-~G~y~l~y~~~~~~~~~~ig~A~S~D-g~~~~~~~~~~i~p~~~~~~~~~gv~dP~v~~~~g~y~m~Yta~~ 79 (268)
T cd08993 2 NPAVVYD-NGEFYLLYRAAGNDGVIRLGLARSRD-GLHFEIDPDPPVWPPPEDGFEEGGVEDPRIVKIDDTYYITYAARP 79 (268)
T ss_pred cCeEEEE-CCEEEEEEEEECCCCceEEEEEEECC-CceEEECCcceEcCCCCCcccccCccCcEEEEECCEEEEEEEccC
Confidence 5766654 89999999853222222345788988 78997532 12 21 11 111233333445777654322211
Q ss_pred --CCCCcEEEEEECCCCceeEEeeceecCCCCcceeeeeEEE-cCCCeEEEEEeecC----CCCcEEEEEeccCCcCCCC
Q 020796 156 --WNSWGSWMEVTVDAGRSWRKYGPIYIPNESLSVIQPVPFH-TANRTLRVLMRSFN----GIGRVCMSESCDGGLTWSY 228 (321)
Q Consensus 156 --~~~~~~~~~~S~D~G~tW~~~~~~~~~~~~~~~~~~~~~~-~~~G~l~~~~r~~~----~~~~~~~~~S~D~G~tWs~ 228 (321)
.....+.++.|+| +.+|+..... ..+... .+.+.. .-+|+.+|++|... ....++++.|+| +.+|+.
T Consensus 80 ~~~~~~~i~lA~S~D-~~~W~~~~~~-~~~~~~---d~~~~p~~~~g~y~m~~r~~~~~~~~~~~I~lA~S~D-l~~W~~ 153 (268)
T cd08993 80 NAPNGTRIGLATTKD-FITFERLGTS-LVPNNR---DGILFPEKINGKYVMLHRPFEYGGTSPPDMWLSFSPD-LVHWGN 153 (268)
T ss_pred CCCCCcEEEEEEeCC-cceEEEeccc-CCCCCC---CEEEeeEEECCEEEEEEccccCCCCCCCcEEEEECCC-cCccCC
Confidence 1234577888876 7899986532 222111 122222 12689999987542 246899999988 789987
Q ss_pred Ccc
Q 020796 229 AKP 231 (321)
Q Consensus 229 ~~~ 231 (321)
...
T Consensus 154 ~~~ 156 (268)
T cd08993 154 HRF 156 (268)
T ss_pred CeE
Confidence 543
No 25
>cd08996 GH32_B_Fructosidase Glycosyl hydrolase family 32, beta-fructosidases. Glycosyl hydrolase family GH32 cleaves sucrose into fructose and glucose via beta-fructofuranosidase activity, producing invert sugar that is a mixture of dextrorotatory D-glucose and levorotatory D-fructose, thus named invertase (EC 3.2.1.26). This family also contains other fructofuranosidases such as inulinase (EC 3.2.1.7), exo-inulinase (EC 3.2.1.80), levanase (EC 3.2.1.65), and transfructosidases such sucrose:sucrose 1-fructosyltransferase (EC 2.4.1.99), fructan:fructan 1-fructosyltransferase (EC 2.4.1.100), sucrose:fructan 6-fructosyltransferase (EC 2.4.1.10), fructan:fructan 6G-fructosyltransferase (EC 2.4.1.243) and levan fructosyltransferases (EC 2.4.1.-). These retaining enzymes (i.e. they retain the configuration at anomeric carbon atom of the substrate) catalyze hydrolysis in two steps involving a covalent glycosyl enzyme intermediate: an aspartate located close to the N-terminus acts as the catal
Probab=98.31 E-value=0.00041 Score=61.74 Aligned_cols=175 Identities=14% Similarity=0.142 Sum_probs=95.7
Q ss_pred EEEecCCcEEEEEecCCC-CCCCCcEEEEEEeCCC-CcCCc-EEccCC---CCCCCCCeEEEEeCCCcEEEEEEeccc--
Q 020796 32 IVEVDKGHFLVAYFGGSC-EGAPDVKIWLQTFKDG-RWQSP-IIADEE---PNVPMWNPVLFKLPSNGLLLFYKIGQE-- 103 (321)
Q Consensus 32 l~~~~~g~l~~~~~~~~~-~g~~~~~i~~s~s~~G-tWs~~-~~~~~~---~~~~~~~p~l~~~~~G~l~l~~~~~~~-- 103 (321)
|+. .+|+.++.|.-... .....+....++|+|. +|+.. ..+.+. .......++++.+.+|+++++|+....
T Consensus 9 ~~~-~~G~yhlfyq~~p~~~~~~~~~wgha~S~Dlv~W~~~~~al~p~~~~d~~g~~sGsav~~~~g~~~~~YTg~~~~~ 87 (298)
T cd08996 9 LVY-FNGKYHLFYQYNPFGPVWGNMHWGHATSKDLVHWEHLPVALAPDDPYDSGGCFSGSAVVDDNGKLVLFYTGNVKLD 87 (298)
T ss_pred eeE-ECCEEEEEEcCCCCCCCCCCcEEEEEEecCccceeECCcccCCCCcccCCeEEeCeEEEcCCCcEEEEEeceeCCC
Confidence 443 45888886643322 1123456778899998 99974 334321 122455677666655899999985321
Q ss_pred -cCCceeEEEEecCCCCCCCCCccCC----CCC-CCCCCCccEEccCCeEEEeeecccC-CCCcEEEEEECCCCceeEEe
Q 020796 104 -VQKWSGCMKRSYNKGVTWSEREQLP----PGI-LGPSKNKPILLENGLLLCGSSVESW-NSWGSWMEVTVDAGRSWRKY 176 (321)
Q Consensus 104 -~~~~~~~~~~S~D~G~TWs~~~~l~----~~~-~g~~~~~~~~~~~G~~~~~~~~~~~-~~~~~~~~~S~D~G~tW~~~ 176 (321)
.......+++|+|+|.+|++....+ +.. ....+.+-+...+|++++....... ....+.++.| +++.+|+..
T Consensus 88 ~~~~~~~~lA~S~ddg~~w~k~~~~~~~~~~~~~~~~~RDP~V~~~~g~~~m~~g~~~~~~~~~i~ly~S-~Dl~~W~~~ 166 (298)
T cd08996 88 GGRRQTQCLAYSTDDGRTFTKYEGNPVIPPPDGYTTHFRDPKVFWHDGKWYMVLGAGTEDGTGRILLYRS-DDLKNWEYL 166 (298)
T ss_pred CCceEEEEEEEEcCCCCEEEECCCCceEcCCCCCCCcccCCeEEeECCEEEEEEEEEecCCCcEEEEEEC-CCCCCCEEc
Confidence 1223456889999999998754321 111 1113333344445777554222111 1223445555 568999987
Q ss_pred ecee-cCCCCccee-eeeEEEcCC-CeEEEEEeec
Q 020796 177 GPIY-IPNESLSVI-QPVPFHTAN-RTLRVLMRSF 208 (321)
Q Consensus 177 ~~~~-~~~~~~~~~-~~~~~~~~~-G~l~~~~r~~ 208 (321)
.++. ..+..-... .|.++.+.+ |+.++++...
T Consensus 167 ~~~~~~~~~~~~~~EcP~l~~l~~~~k~vL~~s~~ 201 (298)
T cd08996 167 GELLTSLGDFGYMWECPDLFPLDVEGKWVLIFSPQ 201 (298)
T ss_pred ceecccCCCccceEeCCcEEEECCCCeEEEEECCC
Confidence 6442 111111222 367777753 6777766544
No 26
>cd08979 GH_J Glycosyl hydrolase families 32 and 68, which for the clan GH-J. This glycosyl hydrolase family clan J (according to carbohydrate-active enzymes database (CAZY)) includes family 32 (GH32) and 68 (GH68). The overall sequence homology between the two families is low (<15% identity), but common sequence motifs have been identified. GH32 enzymes are invertases that also include other fructofuranosidases such as inulinase (EC 3.2.1.7), exo-inulinase (EC 3.2.1.80), levanase (EC 3.2.1.65), and transfructosidases such sucrose:sucrose 1-fructosyltransferase (EC 2.4.1.99), fructan:fructan 1-fructosyltransferase (EC 2.4.1.100), sucrose:fructan 6-fructosyltransferase (EC 2.4.1.10), fructan:fructan 6G-fructosyltransferase (EC 2.4.1.243) and levan fructosyltransferases (EC 2.4.1.-). GH32 enzymes cleave sucrose into fructose and glucose via beta-fructofuranosidase activity, producing invert sugar that is a mixture of dextrorotatory D-glucose and levorotatory D-fructose, thus named inverta
Probab=98.25 E-value=0.00064 Score=59.57 Aligned_cols=175 Identities=13% Similarity=0.158 Sum_probs=94.3
Q ss_pred ccceEEEecCCcEEEEEecCCCCC--CCCcEEEEEEeCCC-CcCCcEE-c--cCCC---CCCCCCeEEEEeCCCcEEEEE
Q 020796 28 HASTIVEVDKGHFLVAYFGGSCEG--APDVKIWLQTFKDG-RWQSPII-A--DEEP---NVPMWNPVLFKLPSNGLLLFY 98 (321)
Q Consensus 28 ~~p~l~~~~~g~l~~~~~~~~~~g--~~~~~i~~s~s~~G-tWs~~~~-~--~~~~---~~~~~~p~l~~~~~G~l~l~~ 98 (321)
..|.++. |++++.|....... .....+.+++|+|+ +|+.... + .+.+ ....+.|.++...+|+.+++|
T Consensus 7 ~~~~~~~---g~yhlfy~~~~~~~~~~~~~~~~~a~S~D~~~w~~~~~~l~~~~~~~~~~~~~~~p~v~~~~dg~~~~~Y 83 (276)
T cd08979 7 FNPAVVV---GKYHLFYLAAPRGGGDGNTSRIGAASSDDGTWWTRPPAPLPPGPPGSFDDGGVWTPSVVRDPDGTYRMFY 83 (276)
T ss_pred cCCceEe---eeEEEEEEccCcCcCCCCcceeEEEEcCCCCccEECCcCccCCCCCchhcCCeEcceEEEcCCCeEEEEE
Confidence 3455543 77888765543321 11334778999999 9997543 3 1111 235678888777669999999
Q ss_pred Eeccc--cCCceeEEEEecCCCCCCCCCccCC-------C--C--CCCCCCCccEEccC--CeEEEeeecccC-CCCcEE
Q 020796 99 KIGQE--VQKWSGCMKRSYNKGVTWSEREQLP-------P--G--ILGPSKNKPILLEN--GLLLCGSSVESW-NSWGSW 162 (321)
Q Consensus 99 ~~~~~--~~~~~~~~~~S~D~G~TWs~~~~l~-------~--~--~~g~~~~~~~~~~~--G~~~~~~~~~~~-~~~~~~ 162 (321)
+.... .......++.|+| +.+|+...... . . .....+.+.+...+ |.+++....... ....+.
T Consensus 84 t~~~~~~~~~~~i~~A~S~D-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~dP~v~~~~~~g~y~m~~~~~~~~~~~~i~ 162 (276)
T cd08979 84 TGYDRPKGAVQRIGLATSKD-LIHWTKHGPNPVPRWYESGNPGPWDDHAWRDPAVVRDEEGGGWRMYYGARDADERGAIG 162 (276)
T ss_pred ecccCCCCCcceEEEEECCC-CCceEECCCCcceeeeecCCCCCcccccccccEEEEECCCCEEEEEEEeEccCCCcEEE
Confidence 85321 2223455777876 68898765331 0 0 00112222333333 776553222111 123455
Q ss_pred EEEECCCCceeEEeecee--cCCCCcce-eeeeEEEcCCCeEEEEEeec
Q 020796 163 MEVTVDAGRSWRKYGPIY--IPNESLSV-IQPVPFHTANRTLRVLMRSF 208 (321)
Q Consensus 163 ~~~S~D~G~tW~~~~~~~--~~~~~~~~-~~~~~~~~~~G~l~~~~r~~ 208 (321)
++.|+ ++.+|+....+. ..+..... ..|.++..+ |..++++...
T Consensus 163 ~a~S~-D~~~W~~~~~~~~~~~~~~~~~~e~P~~~~~~-g~~~l~~~~~ 209 (276)
T cd08979 163 LATSP-DLIHWTPVPPPPGPRTGYDDGQLEVPQVVKID-GRWYLLYSGR 209 (276)
T ss_pred EEECC-CCCcceECCCCCCCCCcccCCcCccceEEEEC-CEEEEEEEec
Confidence 55554 579999866431 11111111 236777664 7888877654
No 27
>smart00602 VPS10 VPS10 domain.
Probab=98.23 E-value=0.0012 Score=64.70 Aligned_cols=207 Identities=14% Similarity=0.104 Sum_probs=101.0
Q ss_pred EeCCC-CcCCcEEccCCCCCC-CCCeEEEEeCCCcEEEEEEeccccCCceeEEEEecCCCCCCCCCcc-CCCCCCCCCCC
Q 020796 61 TFKDG-RWQSPIIADEEPNVP-MWNPVLFKLPSNGLLLFYKIGQEVQKWSGCMKRSYNKGVTWSEREQ-LPPGILGPSKN 137 (321)
Q Consensus 61 ~s~~G-tWs~~~~~~~~~~~~-~~~p~l~~~~~G~l~l~~~~~~~~~~~~~~~~~S~D~G~TWs~~~~-l~~~~~g~~~~ 137 (321)
.|.|| +|........ .... ...-.++...+|.|+|...... ....+.+..|+.+|.+++.... +.....|.+.=
T Consensus 197 VS~Dg~~f~~a~~P~~-~~i~~~~~ytildss~~~vfl~V~~~~--~~~~g~ly~Sds~G~~F~~sl~~~~~~~~g~vDf 273 (612)
T smart00602 197 VSNDRSTFAMAKFPKY-HALGKQQAYTILDSDEDSVFLHVSENN--QNDTGNLYISDSRGTKFSLSLENVNRYTGGYIDF 273 (612)
T ss_pred EECCCCcceEEeCCCC-cccCccccEEEEecCCCcEEEEEecCC--CCceeEEEEECCCCCEEEEehhhhccCCCceeeE
Confidence 34455 8987664322 1111 1123455557899988754311 2234568899999999986321 11111111000
Q ss_pred ccEEccCCeEEEeeecccCCCCcEEEEEECCCCceeEEeec-ee-cCCCCcceee-----eeE------EEc--------
Q 020796 138 KPILLENGLLLCGSSVESWNSWGSWMEVTVDAGRSWRKYGP-IY-IPNESLSVIQ-----PVP------FHT-------- 196 (321)
Q Consensus 138 ~~~~~~~G~~~~~~~~~~~~~~~~~~~~S~D~G~tW~~~~~-~~-~~~~~~~~~~-----~~~------~~~-------- 196 (321)
..+.--+|..+...... ......-.+|-|+|.+|+...+ .. ..+....|.- .++ .+.
T Consensus 274 ~kv~~l~Gv~ian~~~~--~~~~~~t~ITfd~G~~W~~l~~p~~d~~g~~~~C~~~~~~~CsLhl~~~~~~~~~~~~~~s 351 (612)
T smart00602 274 YKVEGLKGIYIANIVSK--VDKQLQTKITFDKGGDWSLLKPPDVDNEGKKFNCDLTSLEKCSLHLHLRYSESPYSGDIAS 351 (612)
T ss_pred EEecCcceEEEEEEecc--cccceEEEEEecCCCceEccCCCCcccCCCccCCCCCCCCCcEEEEeecccccCCCCcccc
Confidence 00111134333222110 1224556889999999996542 11 1121221110 011 000
Q ss_pred ---CCCeEEEEEeecC---CCCcEEEEEeccCCcCCCCCccCCCCCCCCceeEEEcCCCcEEEEEeCCCCCeEEEEEEcC
Q 020796 197 ---ANRTLRVLMRSFN---GIGRVCMSESCDGGLTWSYAKPTQLLNPNSGIDGVKLKDGRLLLAYNTVSRGVLKVALSKD 270 (321)
Q Consensus 197 ---~~G~l~~~~r~~~---~~~~~~~~~S~D~G~tWs~~~~~~~~~~~~~~~~~~~~~g~~~lv~~~~~r~~l~~~~S~D 270 (321)
..|-++++..... .....-...|.|+|.||...... + ......+.|-++++..... ..-.+.+|.|
T Consensus 352 s~~apGii~~~GnvG~~L~~~~~~~tfiS~DgG~tW~~~~~~----~---~~~~~gD~G~iivav~~~~-~t~~i~YS~d 423 (612)
T smart00602 352 SKSAPGIIIASGNVGDGLASYWEPSTFISSDGGLTWRLVFDG----P---HLYAYGDHGGIIVAIEYNS-PTNELKYSTD 423 (612)
T ss_pred cCCCCeEEEEECcccccccccCCCCEEEEcCCCcchHhhcCC----c---eeEEecCCccEEEEEcCCC-CccEEEEECC
Confidence 1132233222211 01122334588999999986531 1 2233445677777664332 2237889999
Q ss_pred CCCCCCccee
Q 020796 271 DGDSWHDALT 280 (321)
Q Consensus 271 ~G~tW~~~~~ 280 (321)
+|+||....+
T Consensus 424 ~G~tW~~~~~ 433 (612)
T smart00602 424 EGKTWKTYTF 433 (612)
T ss_pred CCCceeEeec
Confidence 9999987654
No 28
>cd08979 GH_J Glycosyl hydrolase families 32 and 68, which for the clan GH-J. This glycosyl hydrolase family clan J (according to carbohydrate-active enzymes database (CAZY)) includes family 32 (GH32) and 68 (GH68). The overall sequence homology between the two families is low (<15% identity), but common sequence motifs have been identified. GH32 enzymes are invertases that also include other fructofuranosidases such as inulinase (EC 3.2.1.7), exo-inulinase (EC 3.2.1.80), levanase (EC 3.2.1.65), and transfructosidases such sucrose:sucrose 1-fructosyltransferase (EC 2.4.1.99), fructan:fructan 1-fructosyltransferase (EC 2.4.1.100), sucrose:fructan 6-fructosyltransferase (EC 2.4.1.10), fructan:fructan 6G-fructosyltransferase (EC 2.4.1.243) and levan fructosyltransferases (EC 2.4.1.-). GH32 enzymes cleave sucrose into fructose and glucose via beta-fructofuranosidase activity, producing invert sugar that is a mixture of dextrorotatory D-glucose and levorotatory D-fructose, thus named inverta
Probab=98.13 E-value=0.0024 Score=55.95 Aligned_cols=163 Identities=18% Similarity=0.157 Sum_probs=88.0
Q ss_pred CcEEEEEEeccccCC----ceeEEEEecCCCCCCCCCccCC-C---C---CCCCCCCccEEccCCeEEEeeeccc---CC
Q 020796 92 NGLLLFYKIGQEVQK----WSGCMKRSYNKGVTWSEREQLP-P---G---ILGPSKNKPILLENGLLLCGSSVES---WN 157 (321)
Q Consensus 92 G~l~l~~~~~~~~~~----~~~~~~~S~D~G~TWs~~~~l~-~---~---~~g~~~~~~~~~~~G~~~~~~~~~~---~~ 157 (321)
|+.+|||........ ....+.+|+| +.+|+....+. . + ..+...+.++...+|++++...... ..
T Consensus 14 g~yhlfy~~~~~~~~~~~~~~~~~a~S~D-~~~w~~~~~~l~~~~~~~~~~~~~~~p~v~~~~dg~~~~~Yt~~~~~~~~ 92 (276)
T cd08979 14 GKYHLFYLAAPRGGGDGNTSRIGAASSDD-GTWWTRPPAPLPPGPPGSFDDGGVWTPSVVRDPDGTYRMFYTGYDRPKGA 92 (276)
T ss_pred eeEEEEEEccCcCcCCCCcceeEEEEcCC-CCccEECCcCccCCCCCchhcCCeEcceEEEcCCCeEEEEEecccCCCCC
Confidence 788999985433221 1234566655 89998765422 1 1 1122233344443377654322111 11
Q ss_pred CCcEEEEEECCCCceeEEeeceec--------C--CCCcceeeeeEEEcCC-CeEEEEEeecC--CCCcEEEEEeccCCc
Q 020796 158 SWGSWMEVTVDAGRSWRKYGPIYI--------P--NESLSVIQPVPFHTAN-RTLRVLMRSFN--GIGRVCMSESCDGGL 224 (321)
Q Consensus 158 ~~~~~~~~S~D~G~tW~~~~~~~~--------~--~~~~~~~~~~~~~~~~-G~l~~~~r~~~--~~~~~~~~~S~D~G~ 224 (321)
...+.++.|+| +.+|+....... . ........|.++..++ |+.+|++.... ..+.+.++.|.| +.
T Consensus 93 ~~~i~~A~S~D-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~dP~v~~~~~~g~y~m~~~~~~~~~~~~i~~a~S~D-~~ 170 (276)
T cd08979 93 VQRIGLATSKD-LIHWTKHGPNPVPRWYESGNPGPWDDHAWRDPAVVRDEEGGGWRMYYGARDADERGAIGLATSPD-LI 170 (276)
T ss_pred cceEEEEECCC-CCceEECCCCcceeeeecCCCCCcccccccccEEEEECCCCEEEEEEEeEccCCCcEEEEEECCC-CC
Confidence 23456777775 788988653210 0 1122345677777665 88888886543 246788888877 78
Q ss_pred CCCCCccC--CCCCC----CCceeEEEcCCCcEEEEEeCC
Q 020796 225 TWSYAKPT--QLLNP----NSGIDGVKLKDGRLLLAYNTV 258 (321)
Q Consensus 225 tWs~~~~~--~~~~~----~~~~~~~~~~~g~~~lv~~~~ 258 (321)
+|+..... ..... -..+.+.++ +|+.+|++...
T Consensus 171 ~W~~~~~~~~~~~~~~~~~~e~P~~~~~-~g~~~l~~~~~ 209 (276)
T cd08979 171 HWTPVPPPPGPRTGYDDGQLEVPQVVKI-DGRWYLLYSGR 209 (276)
T ss_pred cceECCCCCCCCCcccCCcCccceEEEE-CCEEEEEEEec
Confidence 99865432 11110 012344454 48888888643
No 29
>cd08978 GH_F Glycosyl hydrolase families 43 and 62 form CAZY clan GH-F. This glycosyl hydrolase clan F (according to carbohydrate-active enzymes database (CAZY)) includes family 43 (GH43) and 62 (GH62). GH43 includes enzymes with beta-xylosidase (EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanases (beta-xylanases) and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. GH62 includes enzymes characterized as arabinofuranosidases (alpha-L-arabinofuranosidases; EC 3.2.1.55) that specifically cleave either alpha-1,2 or alpha-1,3-L-arabinofuranose side chains from xylans. GH43 are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Ma
Probab=98.09 E-value=0.0027 Score=55.35 Aligned_cols=223 Identities=14% Similarity=0.096 Sum_probs=121.0
Q ss_pred CeEEEEeCCCcEEEEEEeccccCCceeEEEEecCCCCCCCCCccCCC------CC--CCCCCCccEEccCCeEEEeeecc
Q 020796 83 NPVLFKLPSNGLLLFYKIGQEVQKWSGCMKRSYNKGVTWSEREQLPP------GI--LGPSKNKPILLENGLLLCGSSVE 154 (321)
Q Consensus 83 ~p~l~~~~~G~l~l~~~~~~~~~~~~~~~~~S~D~G~TWs~~~~l~~------~~--~g~~~~~~~~~~~G~~~~~~~~~ 154 (321)
+|.++.. +|+.+++++.... ......+.+|+| +..|+....+.. .. .+....+-+...+|++++.....
T Consensus 2 DP~v~~~-~~~yyl~~t~~~~-~~~~i~i~~S~D-l~~W~~~~~~~~~~~~~~~~~~~~~~waP~v~~~~g~yyl~y~~~ 78 (271)
T cd08978 2 DPYILRY-NGKYYLYGSTDDA-AGPGVQVWSSKD-LVNWRYEGAVFVAWRGRGEAKDSGGLWAPEVIYYEGKYYLYYSVS 78 (271)
T ss_pred CCcEEEE-CCEEEEEEecCCc-CCCcEEEEECCc-cCCcEECCcccccccccCCcccCCceeCCeEEEECCEEEEEEEcc
Confidence 5777665 6788888764211 111235667776 789987665421 11 11122222334468876543322
Q ss_pred c--CCCCcEEEEEECCCCceeEEeec-eecCCCCcceeeeeEEEcCCCeEEEEEeecC---CCCcEEEEEeccCCcCCCC
Q 020796 155 S--WNSWGSWMEVTVDAGRSWRKYGP-IYIPNESLSVIQPVPFHTANRTLRVLMRSFN---GIGRVCMSESCDGGLTWSY 228 (321)
Q Consensus 155 ~--~~~~~~~~~~S~D~G~tW~~~~~-~~~~~~~~~~~~~~~~~~~~G~l~~~~r~~~---~~~~~~~~~S~D~G~tWs~ 228 (321)
. .....+.++.|+| ...|..... ..........+.|.++..++|+.++++.... ..+.++++++.+....+..
T Consensus 79 ~~~~~~~~i~~a~s~d-~~g~~~~~~~~~~~~~~~~~iDp~vf~d~dg~~yl~~~~~~~~~~~~~i~~~~l~~~~~~~~~ 157 (271)
T cd08978 79 DFDYNGSGIGVATSED-PTGPFEDKVIRPPTSNNGNSIDPTVFKDDDGKYYLYYGSGDPGAGFGGIYISELTDDLTKPTG 157 (271)
T ss_pred cCCCCcccEEEEECCC-CCCCccccccCcCccCCCCccCcceEEcCCCCEEEEEecccCCCCCCcEEEEEECcccccccC
Confidence 1 1234566676655 555544210 0111222356678888888899999886542 1357888888887666543
Q ss_pred CccC---C-CC-CCCCceeEEEcCCCcEEEEEeCC----CCCeEEEEEEcCCCCCCCccee-----eccc--CCCceece
Q 020796 229 AKPT---Q-LL-NPNSGIDGVKLKDGRLLLAYNTV----SRGVLKVALSKDDGDSWHDALT-----LEEN--LAMEFSYP 292 (321)
Q Consensus 229 ~~~~---~-~~-~~~~~~~~~~~~~g~~~lv~~~~----~r~~l~~~~S~D~G~tW~~~~~-----l~~~--~~~~~~yp 292 (321)
...+ . .. ....+..+.. .+|..+|++... ....+.+++|.+-.-.|..... +... .....++.
T Consensus 158 ~~~~~~~~~~~~~~~EgP~~~k-~~g~yyl~ys~~~~~~~~y~~~~~~s~~~~Gp~~~~~~~~~~~~~~~~~~~~~~gh~ 236 (271)
T cd08978 158 PPVLSASSGNNNAVTEGPTIFK-KNGYYYLTYSANGTGDYGYNIGYATSDSIDGPYVKKGGNAGLESDSAGFVGVGLGHG 236 (271)
T ss_pred CceeeeeeccCCCceEccEEEE-ECCEEEEEEEeCCCCCCCceEEEEECCCCCCCcCcCCCCcceEeccCCCccccCCCc
Confidence 2210 0 00 0111233444 458899988643 2345677777654445665321 1111 11245667
Q ss_pred EEEEccCCeEEEEEEeCC
Q 020796 293 AVIQASDGSVHITYTYNR 310 (321)
Q Consensus 293 ~~~~~~dg~l~v~y~~~~ 310 (321)
.++..++|..+++|...+
T Consensus 237 ~~~~~~~g~~~~~yh~~~ 254 (271)
T cd08978 237 SVVRDKNGEWYLVYHAYN 254 (271)
T ss_pred eEEECCCCCEEEEEEeec
Confidence 788877788888887653
No 30
>cd08999 GH43_ABN_2 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes mostly enzymes with alpha-L-arabinofuranosidase (AFN; EC 3.2.1.55) and endo-alpha-L-arabinanase (ABN; EC 3.2.1.99) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. The GH43 ABN enzymes hydrolyze alpha-1,5-L-arabinofuranoside linkages while the ABF enzymes cleave arabinose side chains so that the combined actions of these two enzymes reduce arabinan to L-arabinose and/or arabinooligosaccharides. These arabinan-degrading enzymes are important in the food industry for efficient production of L-arabinose from agricultural waste; L-arabinose is often used as a bioactive sweetener. A common structural feature of GH43 enzymes is a 5-b
Probab=98.01 E-value=0.0052 Score=54.27 Aligned_cols=223 Identities=16% Similarity=0.086 Sum_probs=121.9
Q ss_pred CCCCeEEEEeCCCcEEEEEEeccccCCceeEEEEecCCCCCCCCCccCCCC-C----CCCCCCccEEccCCeEEEeeecc
Q 020796 80 PMWNPVLFKLPSNGLLLFYKIGQEVQKWSGCMKRSYNKGVTWSEREQLPPG-I----LGPSKNKPILLENGLLLCGSSVE 154 (321)
Q Consensus 80 ~~~~p~l~~~~~G~l~l~~~~~~~~~~~~~~~~~S~D~G~TWs~~~~l~~~-~----~g~~~~~~~~~~~G~~~~~~~~~ 154 (321)
...+|.++.. +|+-+++.+... .....+.+|+| ..+|+....+.+. . .+....+.+...+|++++.....
T Consensus 7 ~~~DP~i~~~-~g~yy~~~t~~~---~~~i~~~~S~D-l~~W~~~g~~l~~~~~~~~~~~~waP~v~~~~g~y~~~y~~~ 81 (287)
T cd08999 7 DFPDPSVIRV-DGTYYAYATNGN---GPNVPIATSTD-LVNWTYLGDAFPKLPRWWTGGDFWAPDVSYVNGKYVLYYSAR 81 (287)
T ss_pred CCCCCeEEEE-CCEEEEEEeCCC---CCcEEEEECCC-CCCcEECCcccCCCCCcccCCCccCceEEEECCEEEEEEEee
Confidence 3467888776 788888766421 12334677777 7899866543221 1 11122222344568865542221
Q ss_pred cC--CCCcEEEEEECCCCceeEEeeceec--CCCCcceeeeeEEEcCCCeEEEEEeecCC----CCcEEEEEeccCCcCC
Q 020796 155 SW--NSWGSWMEVTVDAGRSWRKYGPIYI--PNESLSVIQPVPFHTANRTLRVLMRSFNG----IGRVCMSESCDGGLTW 226 (321)
Q Consensus 155 ~~--~~~~~~~~~S~D~G~tW~~~~~~~~--~~~~~~~~~~~~~~~~~G~l~~~~r~~~~----~~~~~~~~S~D~G~tW 226 (321)
.. ....+.++.|+|-.-.|+......+ +......+.|.++..+||+.++++..... ...+++++...++.+|
T Consensus 82 ~~~~~~~~i~~a~s~~p~g~~~~~~~~~~~~~~~~~~~~Dp~v~~d~dG~~Yl~~~~~~~~~~~~~~i~~~~ls~d~~~~ 161 (287)
T cd08999 82 DKGSGGQCIGVATADSPLGPFTDHGKPPLCCPEGEGGAIDPSFFTDTDGKRYLVWKSDGNSIGKPTPIYLQELSADGLTL 161 (287)
T ss_pred cCCCCCEEEEEEECCCCCCCCccCCcceEecCCCCCCccCCCeEECCCCCEEEEEeccCCCCCCCceEEEEEeCCCCccc
Confidence 11 1234567778775457876543221 12223456788888778999888754321 1236665433447888
Q ss_pred CCCc-cC-C--C--CC-CCCceeEEEcCCCcEEEEEeCC----C--CCeEEEEEEcCCCCCCCcce--eecc--cCC--C
Q 020796 227 SYAK-PT-Q--L--LN-PNSGIDGVKLKDGRLLLAYNTV----S--RGVLKVALSKDDGDSWHDAL--TLEE--NLA--M 287 (321)
Q Consensus 227 s~~~-~~-~--~--~~-~~~~~~~~~~~~g~~~lv~~~~----~--r~~l~~~~S~D~G~tW~~~~--~l~~--~~~--~ 287 (321)
.... .+ . . .. ...+..+.. .+|+.+|++... . ...+.++.|.+--..|.+.. ++.. ... .
T Consensus 162 ~~~~~~i~~~~~~~~~~~~EgP~i~k-~~g~yyl~~S~~~~~~~~~~y~i~~~~s~~~~Gpw~~~~~~~~~~~~~~~~~~ 240 (287)
T cd08999 162 TGEPVRLLRNDEDWEGPLVEAPYLVK-RGGYYYLFYSAGGCCSGASTYAVGVARSKSLLGPYVKAPGPPLLTSSGNGRWV 240 (287)
T ss_pred cCCcEeeecccccccCCceEeeEEEE-ECCEEEEEEEcCCccCCCCCEEEEEEEeCCCcCCcCCCCCCcceeccCCCeEE
Confidence 6432 11 0 0 00 111233444 479999988542 2 45667788876444687642 2221 111 1
Q ss_pred ceeceEEEEccCCeEEEEEEe
Q 020796 288 EFSYPAVIQASDGSVHITYTY 308 (321)
Q Consensus 288 ~~~yp~~~~~~dg~l~v~y~~ 308 (321)
+-++..++..++|..+++|-.
T Consensus 241 g~gh~~~~~~~~g~~~~~yh~ 261 (287)
T cd08999 241 GPGHNTVVTDDDGRDWLLYHA 261 (287)
T ss_pred cCCCCeEEECCCCCEEEEEEE
Confidence 235778888778888888754
No 31
>cd08996 GH32_B_Fructosidase Glycosyl hydrolase family 32, beta-fructosidases. Glycosyl hydrolase family GH32 cleaves sucrose into fructose and glucose via beta-fructofuranosidase activity, producing invert sugar that is a mixture of dextrorotatory D-glucose and levorotatory D-fructose, thus named invertase (EC 3.2.1.26). This family also contains other fructofuranosidases such as inulinase (EC 3.2.1.7), exo-inulinase (EC 3.2.1.80), levanase (EC 3.2.1.65), and transfructosidases such sucrose:sucrose 1-fructosyltransferase (EC 2.4.1.99), fructan:fructan 1-fructosyltransferase (EC 2.4.1.100), sucrose:fructan 6-fructosyltransferase (EC 2.4.1.10), fructan:fructan 6G-fructosyltransferase (EC 2.4.1.243) and levan fructosyltransferases (EC 2.4.1.-). These retaining enzymes (i.e. they retain the configuration at anomeric carbon atom of the substrate) catalyze hydrolysis in two steps involving a covalent glycosyl enzyme intermediate: an aspartate located close to the N-terminus acts as the catal
Probab=98.00 E-value=0.0023 Score=56.95 Aligned_cols=214 Identities=19% Similarity=0.218 Sum_probs=112.3
Q ss_pred CCCcEEEEEEeccccCCc---eeEEEEecCCCCCCCCCcc-CCC-C---CCCCCCCccEEccCCeEEEeeeccc-----C
Q 020796 90 PSNGLLLFYKIGQEVQKW---SGCMKRSYNKGVTWSEREQ-LPP-G---ILGPSKNKPILLENGLLLCGSSVES-----W 156 (321)
Q Consensus 90 ~~G~l~l~~~~~~~~~~~---~~~~~~S~D~G~TWs~~~~-l~~-~---~~g~~~~~~~~~~~G~~~~~~~~~~-----~ 156 (321)
.+|+.+|||+.......+ .-..++|+| ..+|+.... +.+ . ..|...+.++...+|++++. |... .
T Consensus 12 ~~G~yhlfyq~~p~~~~~~~~~wgha~S~D-lv~W~~~~~al~p~~~~d~~g~~sGsav~~~~g~~~~~-YTg~~~~~~~ 89 (298)
T cd08996 12 FNGKYHLFYQYNPFGPVWGNMHWGHATSKD-LVHWEHLPVALAPDDPYDSGGCFSGSAVVDDNGKLVLF-YTGNVKLDGG 89 (298)
T ss_pred ECCEEEEEEcCCCCCCCCCCcEEEEEEecC-ccceeECCcccCCCCcccCCeEEeCeEEEcCCCcEEEE-EeceeCCCCC
Confidence 378999999753322111 223578887 799987543 222 1 12233344444333775443 2211 1
Q ss_pred CCCcEEEEEECCCCceeEEeeceec----CCCCcceeeeeEEEcCCCeEEEEEeecC--CCCcEEEEEeccCCcCCCCCc
Q 020796 157 NSWGSWMEVTVDAGRSWRKYGPIYI----PNESLSVIQPVPFHTANRTLRVLMRSFN--GIGRVCMSESCDGGLTWSYAK 230 (321)
Q Consensus 157 ~~~~~~~~~S~D~G~tW~~~~~~~~----~~~~~~~~~~~~~~~~~G~l~~~~r~~~--~~~~~~~~~S~D~G~tWs~~~ 230 (321)
......+++|+|+|.+|++...... .........|.++..+ |+.+|++.... ..+.+.+.+|.| +.+|+...
T Consensus 90 ~~~~~~lA~S~ddg~~w~k~~~~~~~~~~~~~~~~~RDP~V~~~~-g~~~m~~g~~~~~~~~~i~ly~S~D-l~~W~~~~ 167 (298)
T cd08996 90 RRQTQCLAYSTDDGRTFTKYEGNPVIPPPDGYTTHFRDPKVFWHD-GKWYMVLGAGTEDGTGRILLYRSDD-LKNWEYLG 167 (298)
T ss_pred ceEEEEEEEEcCCCCEEEECCCCceEcCCCCCCCcccCCeEEeEC-CEEEEEEEEEecCCCcEEEEEECCC-CCCCEEcc
Confidence 1234678899999999998652211 1112334567777654 88877765432 246777788877 88998654
Q ss_pred cC--CCCCCC---CceeEEEcCC-CcEEEEEeCCCC------CeEEEEEEcCCCCCCCc----ceeecccCCCceeceE-
Q 020796 231 PT--QLLNPN---SGIDGVKLKD-GRLLLAYNTVSR------GVLKVALSKDDGDSWHD----ALTLEENLAMEFSYPA- 293 (321)
Q Consensus 231 ~~--~~~~~~---~~~~~~~~~~-g~~~lv~~~~~r------~~l~~~~S~D~G~tW~~----~~~l~~~~~~~~~yp~- 293 (321)
.+ ...... ..+.+.++.+ ++.+|++..... ......+..-++.++.. ...++.+. + -|..
T Consensus 168 ~~~~~~~~~~~~~EcP~l~~l~~~~k~vL~~s~~~~~~~~~~~~~~y~~G~~~~~~~~~~~~~~~~lD~G~--d-fYA~q 244 (298)
T cd08996 168 ELLTSLGDFGYMWECPDLFPLDVEGKWVLIFSPQGLEPEGNGSGTGYLVGDFDGTTFTFDHTEFGELDYGF--D-FYAPQ 244 (298)
T ss_pred eecccCCCccceEeCCcEEEECCCCeEEEEECCCCCCCCCCccceEEEEEEEECCCCeEecCCceEecCCC--C-eEeCc
Confidence 32 111110 1234455543 788888754311 12233333334555542 34444332 2 3443
Q ss_pred EEEccCC-eEEEEEEeCC
Q 020796 294 VIQASDG-SVHITYTYNR 310 (321)
Q Consensus 294 ~~~~~dg-~l~v~y~~~~ 310 (321)
....++| ++.+.|-.+.
T Consensus 245 ~~~~~~~r~i~~gW~~~~ 262 (298)
T cd08996 245 TFVDPDGRRILIGWMGNW 262 (298)
T ss_pred eeeCCCCCEEEEEEecCC
Confidence 3333244 5677786653
No 32
>cd08993 GH43_DUF377 Glycosyl hydrolase family 43 containing a domain of unknown function. This subfamily has sequences similar to the glycosyl hydrolase family 43 (GH43) and contains uncharacterized proteins. GH43 proteins are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the GH43 enzymes display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller.
Probab=97.94 E-value=0.00086 Score=58.77 Aligned_cols=137 Identities=14% Similarity=0.097 Sum_probs=80.8
Q ss_pred EEccCCeEEEeeecccCC-CCcEEEEEECCCCceeEEee-ceecC--C---CCcceeeeeEEEcCCCeEEEEEeecC---
Q 020796 140 ILLENGLLLCGSSVESWN-SWGSWMEVTVDAGRSWRKYG-PIYIP--N---ESLSVIQPVPFHTANRTLRVLMRSFN--- 209 (321)
Q Consensus 140 ~~~~~G~~~~~~~~~~~~-~~~~~~~~S~D~G~tW~~~~-~~~~~--~---~~~~~~~~~~~~~~~G~l~~~~r~~~--- 209 (321)
++..+|.+++........ .....+++|.| |.+|+... ++..+ . ...++..|.++.. +|+++|++....
T Consensus 5 v~~~~G~y~l~y~~~~~~~~~~ig~A~S~D-g~~~~~~~~~~i~p~~~~~~~~~gv~dP~v~~~-~g~y~m~Yta~~~~~ 82 (268)
T cd08993 5 VVYDNGEFYLLYRAAGNDGVIRLGLARSRD-GLHFEIDPDPPVWPPPEDGFEEGGVEDPRIVKI-DDTYYITYAARPNAP 82 (268)
T ss_pred EEEECCEEEEEEEEECCCCceEEEEEEECC-CceEEECCcceEcCCCCCcccccCccCcEEEEE-CCEEEEEEEccCCCC
Confidence 344688765542221111 23467888988 89998753 22222 1 1234456777754 678988886543
Q ss_pred CCCcEEEEEeccCCcCCCCCccCCCCCCCCceeEEE-cCCCcEEEEEeCC-----CCCeEEEEEEcCCCCCCCcceee
Q 020796 210 GIGRVCMSESCDGGLTWSYAKPTQLLNPNSGIDGVK-LKDGRLLLAYNTV-----SRGVLKVALSKDDGDSWHDALTL 281 (321)
Q Consensus 210 ~~~~~~~~~S~D~G~tWs~~~~~~~~~~~~~~~~~~-~~~g~~~lv~~~~-----~r~~l~~~~S~D~G~tW~~~~~l 281 (321)
....+.++.|+| +.+|+.......+.... ..+.. ..+|+.+|+++.. ....+.++.|.| +.+|.....+
T Consensus 83 ~~~~i~lA~S~D-~~~W~~~~~~~~~~~~d-~~~~p~~~~g~y~m~~r~~~~~~~~~~~I~lA~S~D-l~~W~~~~~~ 157 (268)
T cd08993 83 NGTRIGLATTKD-FITFERLGTSLVPNNRD-GILFPEKINGKYVMLHRPFEYGGTSPPDMWLSFSPD-LVHWGNHRFV 157 (268)
T ss_pred CCcEEEEEEeCC-cceEEEecccCCCCCCC-EEEeeEEECCEEEEEEccccCCCCCCCcEEEEECCC-cCccCCCeEE
Confidence 234688899988 78998643211111111 11111 1379999998653 245778888875 8899886644
No 33
>cd08999 GH43_ABN_2 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes mostly enzymes with alpha-L-arabinofuranosidase (AFN; EC 3.2.1.55) and endo-alpha-L-arabinanase (ABN; EC 3.2.1.99) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. The GH43 ABN enzymes hydrolyze alpha-1,5-L-arabinofuranoside linkages while the ABF enzymes cleave arabinose side chains so that the combined actions of these two enzymes reduce arabinan to L-arabinose and/or arabinooligosaccharides. These arabinan-degrading enzymes are important in the food industry for efficient production of L-arabinose from agricultural waste; L-arabinose is often used as a bioactive sweetener. A common structural feature of GH43 enzymes is a 5-b
Probab=97.88 E-value=0.015 Score=51.25 Aligned_cols=223 Identities=13% Similarity=0.092 Sum_probs=118.5
Q ss_pred ccccceEEEecCCcEEEEEecCCCCCCCCcEEEEEEeCCC-CcCCcEE-ccCCC----CCCCCCeEEEEeCCCcEEEEEE
Q 020796 26 SCHASTIVEVDKGHFLVAYFGGSCEGAPDVKIWLQTFKDG-RWQSPII-ADEEP----NVPMWNPVLFKLPSNGLLLFYK 99 (321)
Q Consensus 26 ~~~~p~l~~~~~g~l~~~~~~~~~~g~~~~~i~~s~s~~G-tWs~~~~-~~~~~----~~~~~~p~l~~~~~G~l~l~~~ 99 (321)
..+.|+|+.. +|+.+++..... ...+.+.+|+|. +|+.... +...+ ....+.|.++.. +|+.+|+|.
T Consensus 7 ~~~DP~i~~~-~g~yy~~~t~~~-----~~~i~~~~S~Dl~~W~~~g~~l~~~~~~~~~~~~waP~v~~~-~g~y~~~y~ 79 (287)
T cd08999 7 DFPDPSVIRV-DGTYYAYATNGN-----GPNVPIATSTDLVNWTYLGDAFPKLPRWWTGGDFWAPDVSYV-NGKYVLYYS 79 (287)
T ss_pred CCCCCeEEEE-CCEEEEEEeCCC-----CCcEEEEECCCCCCcEECCcccCCCCCcccCCCccCceEEEE-CCEEEEEEE
Confidence 4578999887 588887543321 134788889987 9987543 33211 235677877665 599999988
Q ss_pred ecccc-CCceeEEEEecCCCCCCCCCccCC----CCCCCCCCCccEEccCCeEEEeeeccc-CCC--CcEEEEEECCCCc
Q 020796 100 IGQEV-QKWSGCMKRSYNKGVTWSEREQLP----PGILGPSKNKPILLENGLLLCGSSVES-WNS--WGSWMEVTVDAGR 171 (321)
Q Consensus 100 ~~~~~-~~~~~~~~~S~D~G~TWs~~~~l~----~~~~g~~~~~~~~~~~G~~~~~~~~~~-~~~--~~~~~~~S~D~G~ 171 (321)
..... ......++.|+|-...|+....+. .+....+...++...+|++++...... ..+ ..+++...+.++.
T Consensus 80 ~~~~~~~~~~i~~a~s~~p~g~~~~~~~~~~~~~~~~~~~~Dp~v~~d~dG~~Yl~~~~~~~~~~~~~~i~~~~ls~d~~ 159 (287)
T cd08999 80 ARDKGSGGQCIGVATADSPLGPFTDHGKPPLCCPEGEGGAIDPSFFTDTDGKRYLVWKSDGNSIGKPTPIYLQELSADGL 159 (287)
T ss_pred eecCCCCCEEEEEEECCCCCCCCccCCcceEecCCCCCCccCCCeEECCCCCEEEEEeccCCCCCCCceEEEEEeCCCCc
Confidence 53221 122344677877555787643221 111112233344545788766532211 111 1244444445677
Q ss_pred eeEEee-ceecCC--CCcceee-eeEEEcCCCeEEEEEeecC---C--CCcEEEEEeccCCcCCCCCccCCCCC--CC--
Q 020796 172 SWRKYG-PIYIPN--ESLSVIQ-PVPFHTANRTLRVLMRSFN---G--IGRVCMSESCDGGLTWSYAKPTQLLN--PN-- 238 (321)
Q Consensus 172 tW~~~~-~~~~~~--~~~~~~~-~~~~~~~~G~l~~~~r~~~---~--~~~~~~~~S~D~G~tWs~~~~~~~~~--~~-- 238 (321)
+|.... .+..+. .....+| |.++.. +|+.++++.... . ...+.+++|+|---.|+......+.. ..
T Consensus 160 ~~~~~~~~i~~~~~~~~~~~~EgP~i~k~-~g~yyl~~S~~~~~~~~~~y~i~~~~s~~~~Gpw~~~~~~~~~~~~~~~~ 238 (287)
T cd08999 160 TLTGEPVRLLRNDEDWEGPLVEAPYLVKR-GGYYYLFYSAGGCCSGASTYAVGVARSKSLLGPYVKAPGPPLLTSSGNGR 238 (287)
T ss_pred cccCCcEeeecccccccCCceEeeEEEEE-CCEEEEEEEcCCccCCCCCEEEEEEEeCCCcCCcCCCCCCcceeccCCCe
Confidence 775432 121111 1112233 566654 689888875432 1 23577788887655788643211110 10
Q ss_pred ----CceeEEEcCCCcEEEEEe
Q 020796 239 ----SGIDGVKLKDGRLLLAYN 256 (321)
Q Consensus 239 ----~~~~~~~~~~g~~~lv~~ 256 (321)
+...++..++|+.+++|.
T Consensus 239 ~~g~gh~~~~~~~~g~~~~~yh 260 (287)
T cd08999 239 WVGPGHNTVVTDDDGRDWLLYH 260 (287)
T ss_pred EEcCCCCeEEECCCCCEEEEEE
Confidence 112344555788888774
No 34
>COG4447 Uncharacterized protein related to plant photosystem II stability/assembly factor [General function prediction only]
Probab=97.84 E-value=8.2e-05 Score=63.33 Aligned_cols=142 Identities=16% Similarity=0.173 Sum_probs=77.1
Q ss_pred eeEEEEecCCCCCCCCCccCCCCCCCCCCCccEEccCCeEEEeeecccC-CCCcEEEEEECCCCceeEEeeceecCCCCc
Q 020796 108 SGCMKRSYNKGVTWSEREQLPPGILGPSKNKPILLENGLLLCGSSVESW-NSWGSWMEVTVDAGRSWRKYGPIYIPNESL 186 (321)
Q Consensus 108 ~~~~~~S~D~G~TWs~~~~l~~~~~g~~~~~~~~~~~G~~~~~~~~~~~-~~~~~~~~~S~D~G~tW~~~~~~~~~~~~~ 186 (321)
++.|.-++|+|.||.+... .-+.. ..... .+. ..|.| .+....+++|+|+|+||.+.. +... ..
T Consensus 63 rgtiletdd~g~tw~qal~-~~gr~--~f~sv--------~f~-~~egw~vGe~sqll~T~DgGqsWARi~-~~e~--~e 127 (339)
T COG4447 63 RGTILETDDGGITWAQALD-FLGRH--AFHSV--------SFL-GMEGWIVGEPSQLLHTTDGGQSWARIP-LSEK--LE 127 (339)
T ss_pred cceEEEecCCcccchhhhc-hhhhh--heeee--------eee-cccccccCCcceEEEecCCCcchhhch-hhcC--CC
Confidence 3468899999999987653 22211 11111 111 11232 244567999999999999853 2211 11
Q ss_pred ceeeeeEEEcCCCeEEEEEeecCCCCcEEEEEeccCCcCCCCCccCCCC--CCCCceeEEEcCCCcEEEEEeCCCCCeEE
Q 020796 187 SVIQPVPFHTANRTLRVLMRSFNGIGRVCMSESCDGGLTWSYAKPTQLL--NPNSGIDGVKLKDGRLLLAYNTVSRGVLK 264 (321)
Q Consensus 187 ~~~~~~~~~~~~G~l~~~~r~~~~~~~~~~~~S~D~G~tWs~~~~~~~~--~~~~~~~~~~~~~g~~~lv~~~~~r~~l~ 264 (321)
+.. -+|..+++.+-+|+.. .+.| .+++|+|++|+...+-..+ .++ .+.+..|+.+++|.... .
T Consensus 128 g~~-~sI~f~d~q~g~m~gd----~Gai--l~T~DgGk~Wk~l~e~~v~~~~~n---~ia~s~dng~vaVg~rG-----s 192 (339)
T COG4447 128 GFP-DSITFLDDQRGEMLGD----QGAI--LKTTDGGKNWKALVEKAVGLAVPN---EIARSADNGYVAVGARG-----S 192 (339)
T ss_pred CCc-ceeEEecchhhhhhcc----cceE--EEecCCcccHhHhcccccchhhhh---hhhhhccCCeEEEecCc-----c
Confidence 211 1333344434333322 2444 4578999999986542211 111 12344678888887532 3
Q ss_pred EEEEcCCCCCCCcce
Q 020796 265 VALSKDDGDSWHDAL 279 (321)
Q Consensus 265 ~~~S~D~G~tW~~~~ 279 (321)
++.+-+-|++|-.++
T Consensus 193 ~f~T~~aGqt~~~~~ 207 (339)
T COG4447 193 FFSTWGAGQTVWLPH 207 (339)
T ss_pred eEecCCCCccEEecc
Confidence 455667788876554
No 35
>PF04616 Glyco_hydro_43: Glycosyl hydrolases family 43; InterPro: IPR006710 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 43 GH43 from CAZY includes enzymes with the following activities, beta-xylosidase (3.2.1.37 from EC), alpha-L-arabinofuranosidase (3.2.1.55 from EC); arabinanase (3.2.1.99 from EC), and xylanase (3.2.1.8 from EC).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3KST_B 1UV4_A 1YRZ_A 1YIF_B 3NQH_A 3QED_D 3QEE_A 3QEF_B 1YI7_A 1Y7B_B ....
Probab=97.82 E-value=0.0033 Score=55.44 Aligned_cols=223 Identities=18% Similarity=0.154 Sum_probs=128.3
Q ss_pred CCCCeEEEEeCCCcEEEEEEeccccCCceeEEEEecCCCCCCCCCccCCCC--C-CCC---C-CCccEEccCCeEEEeee
Q 020796 80 PMWNPVLFKLPSNGLLLFYKIGQEVQKWSGCMKRSYNKGVTWSEREQLPPG--I-LGP---S-KNKPILLENGLLLCGSS 152 (321)
Q Consensus 80 ~~~~p~l~~~~~G~l~l~~~~~~~~~~~~~~~~~S~D~G~TWs~~~~l~~~--~-~g~---~-~~~~~~~~~G~~~~~~~ 152 (321)
...+|.++.. +|+.+++.+..... ....+.+|+| -.+|+....+... . ... . ..+-+...+|++++...
T Consensus 9 ~~~DP~i~~~-~~~yY~~~t~~~~~--~~i~v~~S~D-L~~W~~~g~~~~~~~~~~~~~~~~~WAP~i~~~~g~yy~y~~ 84 (286)
T PF04616_consen 9 DYADPSIVRF-GDGYYLYGTTDPEG--PGIPVWSSKD-LVNWTDAGNVLPPPPDWDWANNGNIWAPEIHYINGKYYMYYS 84 (286)
T ss_dssp SECSEEEEEE-TTEEEEEEEEBTCE--SBEEEEEESS-SSSEEEEEECESSTTTTSTTTSETTEEEEEEEETTEEEEEEE
T ss_pred CCCCCEEEEE-CCEEEEEEEcCCCC--CeEEEEECCC-CcccccceeeecccccccccccccccCCeEEEcCCeEEEEEE
Confidence 4567988776 45577776542111 2345777776 6889987753321 1 100 0 11224445888766544
Q ss_pred ccc-CCCCcEEEEEECCCCceeEEeeceecCCCCcceeeeeEEEcCCCeEEEEEeecCCC---CcEEEEEeccCCcCCCC
Q 020796 153 VES-WNSWGSWMEVTVDAGRSWRKYGPIYIPNESLSVIQPVPFHTANRTLRVLMRSFNGI---GRVCMSESCDGGLTWSY 228 (321)
Q Consensus 153 ~~~-~~~~~~~~~~S~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~~~r~~~~~---~~~~~~~S~D~G~tWs~ 228 (321)
... .....+.++.|++-.-.|+.+..+... ....+.|.++..+||+.++++...... ..+++++..+.+.++..
T Consensus 85 ~~~~~~~~~~~va~a~~~~Gp~~~~~~~~~~--~~~~iD~~vf~d~dG~~Yl~~~~~~~~~~~~~i~~~~l~~d~~~~~~ 162 (286)
T PF04616_consen 85 DSGGDAGSGIGVATADSPDGPWTDPGKIPIP--GGNSIDPSVFVDDDGKYYLYYGSWDNGDPGGGIYIAELDPDGTSLTG 162 (286)
T ss_dssp EESTSTTEEEEEEEESSTTS-EEEEEEEEEE--SSSSSSEEEEEETTSEEEEEEEESTTTSSEEEEEEEEEETTTSSEEE
T ss_pred ccCCCCCcceeEEEeCCcccccccccceeec--cccccCceEEEecCCCcEEeCcccCCCccceeEEeecccCccccccC
Confidence 111 123457888888776799988654322 234567889888889999988765322 35677666665665554
Q ss_pred Cc-cCCCCC-------CCCceeEEEcCCCcEEEEEeCC---CCCeEEEEEEcCCCCCC--Ccce-eecc----cCCCcee
Q 020796 229 AK-PTQLLN-------PNSGIDGVKLKDGRLLLAYNTV---SRGVLKVALSKDDGDSW--HDAL-TLEE----NLAMEFS 290 (321)
Q Consensus 229 ~~-~~~~~~-------~~~~~~~~~~~~g~~~lv~~~~---~r~~l~~~~S~D~G~tW--~~~~-~l~~----~~~~~~~ 290 (321)
.. ....+. ...+..+.. .+|..+|++... ....+.++.|.+--..| .+.. ++.. ....+.+
T Consensus 163 ~~~~~~~~~~~~~~~~~~Egp~~~k-~~g~yYl~~s~~~~~~~y~v~~~~s~~~~gp~~~~~~~~~~~~~~~~~~~~g~g 241 (286)
T PF04616_consen 163 EPVVVIFPGDEGWDGGVVEGPFVFK-HGGKYYLFYSAGGTGSPYQVGYARSDSPLGPWEWKKGNPILFSRDGENGVYGPG 241 (286)
T ss_dssp EECEEEEEESGSSTTTBEEEEEEEE-ETTEEEEEEEESGSSTTTEEEEEEESSTTSGGEETTTCBCEGTTBTTSSCEEEE
T ss_pred cccccccccccccCCccccceEEEE-cCCCEEEEEeccCCCCCceEEEeeccCCCCceeeccCCeEEEeeccCCccccCc
Confidence 33 110111 111233444 578999998632 23667888887533333 3222 2221 1123567
Q ss_pred ceEEEEccCCeEEEEEEeC
Q 020796 291 YPAVIQASDGSVHITYTYN 309 (321)
Q Consensus 291 yp~~~~~~dg~l~v~y~~~ 309 (321)
+..++..+||..+++|...
T Consensus 242 H~~~~~~~~g~~~~~yh~~ 260 (286)
T PF04616_consen 242 HGSVFKDPDGRWYIVYHAR 260 (286)
T ss_dssp EEEEEEETTSEEEEEEEEE
T ss_pred cCCEEECCCCCEEEEEeec
Confidence 8889988899988888653
No 36
>cd08995 GH32_Aec43_like Glycosyl hydrolase family 32. This glycosyl hydrolase family 32 (GH32) includes characterized as well as uncharacterized proteins. GH32 enzymes cleave sucrose into fructose and glucose via beta-fructofuranosidase activity, producing invert sugar that is a mixture of dextrorotatory D-glucose and levorotatory D-fructose, thus named invertase (EC 3.2.1.26). GH32 family also contains other fructofuranosidases such as inulinase (EC 3.2.1.7), exo-inulinase (EC 3.2.1.80), levanase (EC 3.2.1.65), and transfructosidases such sucrose:sucrose 1-fructosyltransferase (EC 2.4.1.99), fructan:fructan 1-fructosyltransferase (EC 2.4.1.100), sucrose:fructan 6-fructosyltransferase (EC 2.4.1.10), fructan:fructan 6G-fructosyltransferase (EC 2.4.1.243) and levan fructosyltransferases (EC 2.4.1.-). These retaining enzymes (i.e. they retain the configuration at anomeric carbon atom of the substrate) catalyze hydrolysis in two steps involving a covalent glycosyl enzyme intermediate: an a
Probab=97.79 E-value=0.01 Score=52.34 Aligned_cols=218 Identities=14% Similarity=0.130 Sum_probs=110.1
Q ss_pred CeEEEEeCCCcEEEEEEeccccCCc-----eeEEEEecCCCCCCCCCcc-CCCC-----CCCCCCCccEEccCCeEEEee
Q 020796 83 NPVLFKLPSNGLLLFYKIGQEVQKW-----SGCMKRSYNKGVTWSEREQ-LPPG-----ILGPSKNKPILLENGLLLCGS 151 (321)
Q Consensus 83 ~p~l~~~~~G~l~l~~~~~~~~~~~-----~~~~~~S~D~G~TWs~~~~-l~~~-----~~g~~~~~~~~~~~G~~~~~~ 151 (321)
+|.++.. +|+.+|||+.......+ .-.+++|+| +.+|+.... +.++ ..+...+.+ +..+|++++..
T Consensus 2 d~~~~~~-~G~yhlfyq~~p~~~~~~~~~~~wgha~S~D-lv~W~~~~~al~~~~~~~d~~g~~sgs~-~~~~g~~~l~Y 78 (280)
T cd08995 2 DPMPFYD-DGTFHIFYLHDPRNGPPEGLRHPWSLLTTKD-LVNYEDHGEAIPRGGDEDDDDAIGTGSV-IKGEGTYHAFY 78 (280)
T ss_pred CccceEE-CCEEEEEEEcCCCCCCcccCCceEEEEEccC-cCccEECcceecCCCCcccccCceEeEE-EeeCCEEEEEE
Confidence 4555544 79999999853322222 124677887 899976543 2221 112222233 33467765432
Q ss_pred ecc-cC--CCCcEEEEEECCCCceeEEee--ceecCCC---CcceeeeeEEEcC-CCeEEEEEeec------CCCCcEEE
Q 020796 152 SVE-SW--NSWGSWMEVTVDAGRSWRKYG--PIYIPNE---SLSVIQPVPFHTA-NRTLRVLMRSF------NGIGRVCM 216 (321)
Q Consensus 152 ~~~-~~--~~~~~~~~~S~D~G~tW~~~~--~~~~~~~---~~~~~~~~~~~~~-~G~l~~~~r~~------~~~~~~~~ 216 (321)
... .. ....+.+++|+| |.+|++.. ++..++. ......|.++..+ +|+.+|++... ...+.+.+
T Consensus 79 Tg~~~~~~~~~~i~~A~S~D-~~~w~k~~~~pv~~~~~~~~~~~~rDP~Vf~~~~~g~y~m~~g~~~~~~~~~~~g~i~~ 157 (280)
T cd08995 79 TGHNLDGKPKQVVMHATSDD-LITWTKDPEFILIADGEGYEKNDWRDPFVFWNEEEGCYWMLLATRLLDGPYNRRGCIAL 157 (280)
T ss_pred EEECCCCCCcEEEEEEECCC-CCccEECCCCeecCCccccccCCccCCcEEEcCCCCeEEEEEEeccCCCCCCCCeEEEE
Confidence 111 11 112456778877 58999854 2221111 1223457777654 58887776432 22356777
Q ss_pred EEeccCCcCCCCCccCCCCCC---CCceeEEEcCCCcEEEEEeCC-CCCeEEEEEEcCCCCCCCcce--eecccCCCcee
Q 020796 217 SESCDGGLTWSYAKPTQLLNP---NSGIDGVKLKDGRLLLAYNTV-SRGVLKVALSKDDGDSWHDAL--TLEENLAMEFS 290 (321)
Q Consensus 217 ~~S~D~G~tWs~~~~~~~~~~---~~~~~~~~~~~g~~~lv~~~~-~r~~l~~~~S~D~G~tW~~~~--~l~~~~~~~~~ 290 (321)
..|.| ..+|+....+..+.. -..+.+.++ +|+.+|++... ......+.++.+....|..+. .++ + .++=
T Consensus 158 ~~S~D-l~~W~~~~~~~~~~~~~~~E~P~l~~~-~g~~~L~~s~~~~~~~~~Y~~~~~~~g~~~~~~~~~~d-g--~dfY 232 (280)
T cd08995 158 FTSKD-LKNWEYEEPFYAPGLYFMPECPDLFKM-GDWWYLVYSEFSENRKTHYRVSKSPFGPWRAPDDDTFD-G--RAFY 232 (280)
T ss_pred EEeCC-cCcceecCceecCCCcceeecceEEEE-CCEEEEEEEeccCCCcEEEEEeCCCCCCeEcCCcCccC-c--cccc
Confidence 77866 789986533211111 012344554 58888888653 223344555543222343322 222 2 2332
Q ss_pred ceEEEEccCCeEEEEEEeC
Q 020796 291 YPAVIQASDGSVHITYTYN 309 (321)
Q Consensus 291 yp~~~~~~dg~l~v~y~~~ 309 (321)
-|.....++.+|.+.|-.+
T Consensus 233 A~~~~~~~~r~i~~gw~~~ 251 (280)
T cd08995 233 AAKTASDGTRRFLFGWVPT 251 (280)
T ss_pred ceeEEEeCCeEEEEEEecC
Confidence 2334443433567778654
No 37
>PF04616 Glyco_hydro_43: Glycosyl hydrolases family 43; InterPro: IPR006710 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 43 GH43 from CAZY includes enzymes with the following activities, beta-xylosidase (3.2.1.37 from EC), alpha-L-arabinofuranosidase (3.2.1.55 from EC); arabinanase (3.2.1.99 from EC), and xylanase (3.2.1.8 from EC).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3KST_B 1UV4_A 1YRZ_A 1YIF_B 3NQH_A 3QED_D 3QEE_A 3QEF_B 1YI7_A 1Y7B_B ....
Probab=97.76 E-value=0.0063 Score=53.63 Aligned_cols=225 Identities=14% Similarity=0.152 Sum_probs=123.7
Q ss_pred CccccceEEEecCCcEEEEEecCCCCCCCCcEEEEEEeCCC-CcCCcEEccC-CCC-----CC-CCCeEEEEeCCCcEEE
Q 020796 25 KSCHASTIVEVDKGHFLVAYFGGSCEGAPDVKIWLQTFKDG-RWQSPIIADE-EPN-----VP-MWNPVLFKLPSNGLLL 96 (321)
Q Consensus 25 ~~~~~p~l~~~~~g~l~~~~~~~~~~g~~~~~i~~s~s~~G-tWs~~~~~~~-~~~-----~~-~~~p~l~~~~~G~l~l 96 (321)
...+.|.|+...+ ..+++.... ... -.|.+.+|+|- +|+....+.. .+. .. .+.|.+... +|+.+|
T Consensus 8 ~~~~DP~i~~~~~-~yY~~~t~~-~~~---~~i~v~~S~DL~~W~~~g~~~~~~~~~~~~~~~~~WAP~i~~~-~g~yy~ 81 (286)
T PF04616_consen 8 GDYADPSIVRFGD-GYYLYGTTD-PEG---PGIPVWSSKDLVNWTDAGNVLPPPPDWDWANNGNIWAPEIHYI-NGKYYM 81 (286)
T ss_dssp SSECSEEEEEETT-EEEEEEEEB-TCE---SBEEEEEESSSSSEEEEEECESSTTTTSTTTSETTEEEEEEEE-TTEEEE
T ss_pred CCCCCCEEEEECC-EEEEEEEcC-CCC---CeEEEEECCCCcccccceeeecccccccccccccccCCeEEEc-CCeEEE
Confidence 4457899998775 466543221 111 23778889996 9998875432 111 11 277988754 899999
Q ss_pred EEEeccccCCceeEEEEecCCCCCCCCCccCCCCCCCCCCCccEEccCCeEEEeeecccCC--CCcEEEEEECCCCceeE
Q 020796 97 FYKIGQEVQKWSGCMKRSYNKGVTWSEREQLPPGILGPSKNKPILLENGLLLCGSSVESWN--SWGSWMEVTVDAGRSWR 174 (321)
Q Consensus 97 ~~~~~~~~~~~~~~~~~S~D~G~TWs~~~~l~~~~~g~~~~~~~~~~~G~~~~~~~~~~~~--~~~~~~~~S~D~G~tW~ 174 (321)
+|............+..|++-...|+.+..+.......+-..++...||+.++........ ...+.+...++++.++.
T Consensus 82 y~~~~~~~~~~~~~va~a~~~~Gp~~~~~~~~~~~~~~iD~~vf~d~dG~~Yl~~~~~~~~~~~~~i~~~~l~~d~~~~~ 161 (286)
T PF04616_consen 82 YYSDSGGDAGSGIGVATADSPDGPWTDPGKIPIPGGNSIDPSVFVDDDGKYYLYYGSWDNGDPGGGIYIAELDPDGTSLT 161 (286)
T ss_dssp EEEEESTSTTEEEEEEEESSTTS-EEEEEEEEEESSSSSSEEEEEETTSEEEEEEEESTTTSSEEEEEEEEEETTTSSEE
T ss_pred EEEccCCCCCcceeEEEeCCcccccccccceeeccccccCceEEEecCCCcEEeCcccCCCccceeEEeecccCcccccc
Confidence 9882122223346688888776789888765321111122234455569987764432111 12456666666677766
Q ss_pred Eee-ceecCC---CCcceee-eeEEEcCCCeEEEEEeecC--CCCcEEEEEeccCCcCCCCC--ccCCC--CCC----CC
Q 020796 175 KYG-PIYIPN---ESLSVIQ-PVPFHTANRTLRVLMRSFN--GIGRVCMSESCDGGLTWSYA--KPTQL--LNP----NS 239 (321)
Q Consensus 175 ~~~-~~~~~~---~~~~~~~-~~~~~~~~G~l~~~~r~~~--~~~~~~~~~S~D~G~tWs~~--~~~~~--~~~----~~ 239 (321)
... .+..++ ......| |.++. .+|.+++++.... ....+.+++|.|---.|+.. .++-. ... ..
T Consensus 162 ~~~~~~~~~~~~~~~~~~~Egp~~~k-~~g~yYl~~s~~~~~~~y~v~~~~s~~~~gp~~~~~~~~~~~~~~~~~~~~g~ 240 (286)
T PF04616_consen 162 GEPVVVIFPGDEGWDGGVVEGPFVFK-HGGKYYLFYSAGGTGSPYQVGYARSDSPLGPWEWKKGNPILFSRDGENGVYGP 240 (286)
T ss_dssp EEECEEEEEESGSSTTTBEEEEEEEE-ETTEEEEEEEESGSSTTTEEEEEEESSTTSGGEETTTCBCEGTTBTTSSCEEE
T ss_pred CcccccccccccccCCccccceEEEE-cCCCEEEEEeccCCCCCceEEEeeccCCCCceeeccCCeEEEeeccCCccccC
Confidence 554 121111 1223445 55555 4688888876432 23467778887764444322 21100 000 01
Q ss_pred c-eeEEEcCCCcEEEEEe
Q 020796 240 G-IDGVKLKDGRLLLAYN 256 (321)
Q Consensus 240 ~-~~~~~~~~g~~~lv~~ 256 (321)
+ ..++..++|+.+++|.
T Consensus 241 gH~~~~~~~~g~~~~~yh 258 (286)
T PF04616_consen 241 GHGSVFKDPDGRWYIVYH 258 (286)
T ss_dssp EEEEEEEETTSEEEEEEE
T ss_pred ccCCEEECCCCCEEEEEe
Confidence 1 2456667888888875
No 38
>cd08978 GH_F Glycosyl hydrolase families 43 and 62 form CAZY clan GH-F. This glycosyl hydrolase clan F (according to carbohydrate-active enzymes database (CAZY)) includes family 43 (GH43) and 62 (GH62). GH43 includes enzymes with beta-xylosidase (EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanases (beta-xylanases) and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. GH62 includes enzymes characterized as arabinofuranosidases (alpha-L-arabinofuranosidases; EC 3.2.1.55) that specifically cleave either alpha-1,2 or alpha-1,3-L-arabinofuranose side chains from xylans. GH43 are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Ma
Probab=97.76 E-value=0.023 Score=49.51 Aligned_cols=221 Identities=11% Similarity=0.015 Sum_probs=115.4
Q ss_pred ccceEEEecCCcEEEEEecCCCCCCCCcEEEEEEeCCC-CcCCcEEc-c----CC---CCCCCCCeEEEEeCCCcEEEEE
Q 020796 28 HASTIVEVDKGHFLVAYFGGSCEGAPDVKIWLQTFKDG-RWQSPIIA-D----EE---PNVPMWNPVLFKLPSNGLLLFY 98 (321)
Q Consensus 28 ~~p~l~~~~~g~l~~~~~~~~~~g~~~~~i~~s~s~~G-tWs~~~~~-~----~~---~~~~~~~p~l~~~~~G~l~l~~ 98 (321)
|.|+|+... |+.++.+..... ....|.+.+|+|+ +|+....+ . .. .....+.|.++.. +|+.+|+|
T Consensus 1 ~DP~v~~~~-~~yyl~~t~~~~---~~~~i~i~~S~Dl~~W~~~~~~~~~~~~~~~~~~~~~~waP~v~~~-~g~yyl~y 75 (271)
T cd08978 1 ADPYILRYN-GKYYLYGSTDDA---AGPGVQVWSSKDLVNWRYEGAVFVAWRGRGEAKDSGGLWAPEVIYY-EGKYYLYY 75 (271)
T ss_pred CCCcEEEEC-CEEEEEEecCCc---CCCcEEEEECCccCCcEECCcccccccccCCcccCCceeCCeEEEE-CCEEEEEE
Confidence 468888765 577765543211 1224677788888 99875433 1 11 1235778988766 59999998
Q ss_pred Eeccc-cCCceeEEEEecCCCCCCCCCc---cCCCCCCCCCCCccEEccCCeEEEeeecccC--CCCcEEEEEECCCCce
Q 020796 99 KIGQE-VQKWSGCMKRSYNKGVTWSERE---QLPPGILGPSKNKPILLENGLLLCGSSVESW--NSWGSWMEVTVDAGRS 172 (321)
Q Consensus 99 ~~~~~-~~~~~~~~~~S~D~G~TWs~~~---~l~~~~~g~~~~~~~~~~~G~~~~~~~~~~~--~~~~~~~~~S~D~G~t 172 (321)
..... .......++.|+| ...|.... .........+...++...+|+.++....... ....+.+..++++...
T Consensus 76 ~~~~~~~~~~~i~~a~s~d-~~g~~~~~~~~~~~~~~~~~iDp~vf~d~dg~~yl~~~~~~~~~~~~~i~~~~l~~~~~~ 154 (271)
T cd08978 76 SVSDFDYNGSGIGVATSED-PTGPFEDKVIRPPTSNNGNSIDPTVFKDDDGKYYLYYGSGDPGAGFGGIYISELTDDLTK 154 (271)
T ss_pred EcccCCCCcccEEEEECCC-CCCCccccccCcCccCCCCccCcceEEcCCCCEEEEEecccCCCCCCcEEEEEECccccc
Confidence 86321 1122345666655 45654432 1111111122333444445887665322110 1235678888887665
Q ss_pred eEEeece-ecCCCCccee-eeeEEEcCCCeEEEEEeecC---CCCcEEEEEeccCCcCCCCCccC------C----CCCC
Q 020796 173 WRKYGPI-YIPNESLSVI-QPVPFHTANRTLRVLMRSFN---GIGRVCMSESCDGGLTWSYAKPT------Q----LLNP 237 (321)
Q Consensus 173 W~~~~~~-~~~~~~~~~~-~~~~~~~~~G~l~~~~r~~~---~~~~~~~~~S~D~G~tWs~~~~~------~----~~~~ 237 (321)
+.....+ .......... .|.++.. +|..++++.... ....+.+++|++---.|+..... . ..++
T Consensus 155 ~~~~~~~~~~~~~~~~~~EgP~~~k~-~g~yyl~ys~~~~~~~~y~~~~~~s~~~~Gp~~~~~~~~~~~~~~~~~~~~~~ 233 (271)
T cd08978 155 PTGPPVLSASSGNNNAVTEGPTIFKK-NGYYYLTYSANGTGDYGYNIGYATSDSIDGPYVKKGGNAGLESDSAGFVGVGL 233 (271)
T ss_pred ccCCceeeeeeccCCCceEccEEEEE-CCEEEEEEEeCCCCCCCceEEEEECCCCCCCcCcCCCCcceEeccCCCccccC
Confidence 5432211 0011111122 3566654 588888876542 23567778887765667753211 0 0011
Q ss_pred CCceeEEEcCCCcEEEEEe
Q 020796 238 NSGIDGVKLKDGRLLLAYN 256 (321)
Q Consensus 238 ~~~~~~~~~~~g~~~lv~~ 256 (321)
+...+++..+|+.++++.
T Consensus 234 -gh~~~~~~~~g~~~~~yh 251 (271)
T cd08978 234 -GHGSVVRDKNGEWYLVYH 251 (271)
T ss_pred -CCceEEECCCCCEEEEEE
Confidence 112345555678888875
No 39
>cd08990 GH43_AXH_like Glycosyl hydrolase family 43, includes arabinoxylan arabinofuranohydrolase, beta-xylosidase, endo-1,4-beta-xylanase, alpha-L-arabinofuranosidase. This glycosyl hydrolase family 43 (GH43) includes enzymes that have been characterized with beta-xylosidase (EC 3.2.1.37), alpha-L-arabinofuranosidase (EC 3.2.1.55), endo-alpha-L-arabinanase as well as arabinoxylan arabinofuranohydrolase (AXH) activities. These are all inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. AXHs specifically hydrolyze the glycosidic bond between arabinofuranosyl substituents and xylopyranosyl backbone residues of
Probab=97.75 E-value=0.023 Score=49.96 Aligned_cols=220 Identities=10% Similarity=0.058 Sum_probs=116.3
Q ss_pred CeEEEEeCCCcEEEEEEeccccCC---c---eeEEEEecCCCCCCCCCccCCC-CC-----CCCCCCccEEccCCeEEEe
Q 020796 83 NPVLFKLPSNGLLLFYKIGQEVQK---W---SGCMKRSYNKGVTWSEREQLPP-GI-----LGPSKNKPILLENGLLLCG 150 (321)
Q Consensus 83 ~p~l~~~~~G~l~l~~~~~~~~~~---~---~~~~~~S~D~G~TWs~~~~l~~-~~-----~g~~~~~~~~~~~G~~~~~ 150 (321)
+|.++.. +|+.+++.+....... + ...+..|+| ..+|+....+.+ .. .+.+..+-+...+|++++.
T Consensus 2 DP~~~~~-~~~yy~~~t~~~~~~~~~~~~~~~~~v~~S~D-l~~W~~~g~~l~~~~~~~~~~~~~wAP~i~~~~g~yy~y 79 (274)
T cd08990 2 DPAAHVF-NGRVYIYTSHDEAGGGGDDFCMNDYHVFSSPD-LVNWTDHGVILSVTDFPAWAKGQAWAPDVVEKNGKYYLY 79 (274)
T ss_pred CCCcEEE-CCEEEEEeCCCCCCCCCCccccceEEEEECCC-CCCcEECcccccCCCCCccccCCcCcCeEEEECCEEEEE
Confidence 3555544 6888877553211110 1 124566776 789986654322 11 1112222234457886553
Q ss_pred eeccc-CCCCcEEEEEECCCCceeEEeeceecC---CCCcceeeeeEEEcCCCeEEEEEeecCCCCcEEEEEeccCCcCC
Q 020796 151 SSVES-WNSWGSWMEVTVDAGRSWRKYGPIYIP---NESLSVIQPVPFHTANRTLRVLMRSFNGIGRVCMSESCDGGLTW 226 (321)
Q Consensus 151 ~~~~~-~~~~~~~~~~S~D~G~tW~~~~~~~~~---~~~~~~~~~~~~~~~~G~l~~~~r~~~~~~~~~~~~S~D~G~tW 226 (321)
..... .....+.++.|+|-.-.|+....+.+. ......+.|.+...+||+.++++... ..++++.-.++..+|
T Consensus 80 y~~~~~~~~~~igva~s~~p~Gpw~~~~~~~~~~~~~~~~~~iDp~vf~d~dG~~yl~~~~~---~~~~~~~l~~d~~~~ 156 (274)
T cd08990 80 FPARDKDGGFAIGVAVSDSPAGPFKDAGGPILITTPSGGWYSIDPAVFIDDDGQAYLYWGGG---LGLRVAKLKPDMLSL 156 (274)
T ss_pred EEeecCCCceEEEEEEeCCCCCCCCCCCCccccccCCCCCCccCCcEEECCCCCEEEEECCc---CCEEEEEeCcccccc
Confidence 22211 112356778887755568876533211 11234567888887889999987543 345555444447788
Q ss_pred CCCcc-CCC--------CCCCCceeEEEcCCCcEEEEEeCCCCCeEEEEEEcCCCCCCCcce-eecccCCCceeceEEEE
Q 020796 227 SYAKP-TQL--------LNPNSGIDGVKLKDGRLLLAYNTVSRGVLKVALSKDDGDSWHDAL-TLEENLAMEFSYPAVIQ 296 (321)
Q Consensus 227 s~~~~-~~~--------~~~~~~~~~~~~~~g~~~lv~~~~~r~~l~~~~S~D~G~tW~~~~-~l~~~~~~~~~yp~~~~ 296 (321)
+.... +.. .....+..+.. .+|+.+|+|.......+.+++|++=--.|.... ++........+++.++.
T Consensus 157 ~~~~~~i~~~~~~~~~~~~~~EgP~i~k-~~G~YYl~yS~~~~~~~~~a~s~~p~GP~~~~g~~~~~~~~~g~gh~~~~~ 235 (274)
T cd08990 157 KGEPVEIVITDGAGDELRRFFEAPWVHK-RNGTYYLSYSTGDPEEIAYATSDSPLGPFTYRGVILDPPVNGGTNHGSIVE 235 (274)
T ss_pred CCCcEEEEeccccCCCCCCcccceeEEE-ECCEEEEEEECCCCcEEEEEEcCCCCCCcccCcEEecCCCCCCCCCCeEEE
Confidence 65321 110 01112233444 579999998754455667777764322454433 22211122456777776
Q ss_pred ccCCeEEEEEEeC
Q 020796 297 ASDGSVHITYTYN 309 (321)
Q Consensus 297 ~~dg~l~v~y~~~ 309 (321)
. +|..|++|-..
T Consensus 236 ~-~g~~y~~yh~~ 247 (274)
T cd08990 236 F-KGQWYLFYHRA 247 (274)
T ss_pred E-CCeEEEEEECC
Confidence 4 58889888653
No 40
>TIGR01322 scrB_fam sucrose-6-phosphate hydrolase.
Probab=97.71 E-value=0.018 Score=54.38 Aligned_cols=175 Identities=13% Similarity=0.061 Sum_probs=91.3
Q ss_pred cceEEEecCCcEEEEEecCCC-CCCCCcEEEEEEeCCC-CcCC-cEEccCCCC---CCCCCeEEEEeCCCcEEEEEEecc
Q 020796 29 ASTIVEVDKGHFLVAYFGGSC-EGAPDVKIWLQTFKDG-RWQS-PIIADEEPN---VPMWNPVLFKLPSNGLLLFYKIGQ 102 (321)
Q Consensus 29 ~p~l~~~~~g~l~~~~~~~~~-~g~~~~~i~~s~s~~G-tWs~-~~~~~~~~~---~~~~~p~l~~~~~G~l~l~~~~~~ 102 (321)
.|--+...+|+.++.|.-... ...+.+....++|+|. +|+. +..+.+... ..+..+..+. .+|+++++|+...
T Consensus 28 DPng~~~~~G~yHlfyq~~p~~~~~g~~~Wgha~S~Dlv~W~~~~~al~P~~~~d~~G~~sGsav~-~~g~~~l~YTg~~ 106 (445)
T TIGR01322 28 DPNGLIYFKGEYHLFYQWFPFGPVHGLKSWGHYTSKDLVHWEDEGVALAPDDPYDSHGCYSGSAVD-NNGQLTLMYTGNV 106 (445)
T ss_pred CCCcceEECCEEEEEEccCCCCCccCceEEEEEECCCccccEECCccCcCCCcccCCceEECeEEe-eCCEEEEEEeccc
Confidence 344233446888887643222 1123344556788898 9986 455544321 2344566554 5899999998532
Q ss_pred ccC----CceeEEEEecCCCCCCCCCc-c-CCCCCCC---CCCCccEEccCCeEEEeeecccCCCCcEEEEEECCCCcee
Q 020796 103 EVQ----KWSGCMKRSYNKGVTWSERE-Q-LPPGILG---PSKNKPILLENGLLLCGSSVESWNSWGSWMEVTVDAGRSW 173 (321)
Q Consensus 103 ~~~----~~~~~~~~S~D~G~TWs~~~-~-l~~~~~g---~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~S~D~G~tW 173 (321)
... ....++++|+|+ .+|++.. + +.+...+ ..+.+-+...+|++++.............+++++++..+|
T Consensus 107 ~~~~~~~~~~q~lA~S~Dg-~~~~k~~~pvi~~~~~~~~~~fRDP~V~~~~g~~~M~~g~~~~~~~g~i~ly~S~Dl~~W 185 (445)
T TIGR01322 107 RDSDWNRESYQCLATMDDD-GHFEKFGIVVIELPPAGYTAHFRDPKVWKHNGHWYMVIGAQTETEKGSILLYRSKDLKNW 185 (445)
T ss_pred cCCCCCeeEEEEEEEcCCC-CeEEECCCceEeCCCCCCcCcCCCCcEEeECCEEEEEEEEecCCCceEEEEEECCCcccC
Confidence 111 112357889885 5898754 2 2221111 1232334445687755422211111123344555678999
Q ss_pred EEeeceecCC----CCcc-ee-eeeEEEcCCCeEEEEEe
Q 020796 174 RKYGPIYIPN----ESLS-VI-QPVPFHTANRTLRVLMR 206 (321)
Q Consensus 174 ~~~~~~~~~~----~~~~-~~-~~~~~~~~~G~l~~~~r 206 (321)
+...++..+. ...+ .. .|.++.+. |+-++++.
T Consensus 186 ~~~g~~~~~~~~~~~~~g~~~ECPdlf~l~-~k~vL~~s 223 (445)
T TIGR01322 186 TFVGEILGDGQNGLDDRGYMWECPDLFSLD-GQDVLLFS 223 (445)
T ss_pred eEecccccccccccCCccceEECCeEEEEC-CcEEEEEe
Confidence 9877553322 1122 23 37788885 45555543
No 41
>PF00251 Glyco_hydro_32N: Glycosyl hydrolases family 32 N-terminal domain; InterPro: IPR013148 This domain corresponds to the N-terminal domain of glycosyl transferase family 32 which forms a five bladed beta propeller structure []. ; PDB: 2AEZ_A 2ADE_A 2ADD_A 1ST8_A 2AEY_A 3UGG_A 3UGH_B 3UGF_B 1Y9M_A 1Y4W_A ....
Probab=97.70 E-value=0.0062 Score=54.56 Aligned_cols=169 Identities=17% Similarity=0.235 Sum_probs=91.2
Q ss_pred ccce-EEEecCCcEEEEEecCCC-CCCCCcEEEEEEeCCC-CcCCc-EEccCCCC---CCCCCeEEEEeCCCcEEEEEEe
Q 020796 28 HAST-IVEVDKGHFLVAYFGGSC-EGAPDVKIWLQTFKDG-RWQSP-IIADEEPN---VPMWNPVLFKLPSNGLLLFYKI 100 (321)
Q Consensus 28 ~~p~-l~~~~~g~l~~~~~~~~~-~g~~~~~i~~s~s~~G-tWs~~-~~~~~~~~---~~~~~p~l~~~~~G~l~l~~~~ 100 (321)
..|- ++. -+|+.+++|.-... ...+.+.---++|+|- +|+.. ..+.++.. ..+...+.+.+. ++++++|+.
T Consensus 10 NDPnG~~~-~~G~yHlFyQ~~P~~~~~g~~~WgHa~S~Dlv~W~~~~~aL~P~~~~d~~g~~SGs~~~~~-~~~~~~YTg 87 (308)
T PF00251_consen 10 NDPNGLVY-YDGKYHLFYQYNPFGPEWGNMHWGHATSKDLVHWEHLPVALPPDEEYDADGCFSGSAVVDD-DNLVLFYTG 87 (308)
T ss_dssp EEEEEEEE-ETTEEEEEEEEETTSSSS-SBEEEEEEESSSSSEEEEEEEE-SSSGGGTTEEEEEEEEEET-TCEEEEEEE
T ss_pred ECCccCeE-eCCEEEEEeccCCCCcccceeEEEEEECCCCCCceeCCceEcccccCCcCccCcceEEEEC-CEEEEEEec
Confidence 3453 554 66999987744332 1122444556889998 99974 34544321 124445555664 489999996
Q ss_pred ccccCCceeEEEEecCCCCCCCCCc---cCCC----CCCCCCCCccE-EccCCeEEEeeecccCCCCcEEEEEECCCCce
Q 020796 101 GQEVQKWSGCMKRSYNKGVTWSERE---QLPP----GILGPSKNKPI-LLENGLLLCGSSVESWNSWGSWMEVTVDAGRS 172 (321)
Q Consensus 101 ~~~~~~~~~~~~~S~D~G~TWs~~~---~l~~----~~~g~~~~~~~-~~~~G~~~~~~~~~~~~~~~~~~~~S~D~G~t 172 (321)
..........+++|+|+|.+|++.. +|.. +.....+.+-+ ...+|++++...........+.++.|+ +..+
T Consensus 88 ~~~~~~~~q~~A~s~d~~~~w~k~~~~~pvi~~~p~~~~~~~RDP~v~~~~~~~~~m~~g~~~~~~g~i~~y~S~-Dl~~ 166 (308)
T PF00251_consen 88 NNRDGKQVQCLAYSTDDGITWTKYPQGNPVIPEPPPGDTTDFRDPKVFWREDGRWYMLLGAGRDGRGCILLYTSD-DLIH 166 (308)
T ss_dssp EETTTEEEEEEEEESSTTSSEEE-TTTCESBESSSTTSCTSEEEEEEEEECTTEEEEEEEEEETTEEEEEEEEES-SSSS
T ss_pred cCCCCCeEEEEEEECCCCCceEEcCCCCcEEEecccCCCCccccCeEEEecCCEEEEEEeccccCcceEEEEEcC-Cccc
Confidence 4332233456899989999998832 2221 11111222223 345687765432211112234556665 5799
Q ss_pred eEEeeceecCCC-Ccceee-eeEEEcCCC
Q 020796 173 WRKYGPIYIPNE-SLSVIQ-PVPFHTANR 199 (321)
Q Consensus 173 W~~~~~~~~~~~-~~~~~~-~~~~~~~~G 199 (321)
|+....+...+. .....| |.++.+++.
T Consensus 167 W~~~~~l~~~~~~~g~~~ECPdlf~l~~~ 195 (308)
T PF00251_consen 167 WEYLGPLFIPGDNGGGMWECPDLFPLDGK 195 (308)
T ss_dssp EEEEEEESEEETTTSSEEEEEEEEEEEBT
T ss_pred CceeCcccccccccccccccceEEEECCc
Confidence 998875543322 122333 677776554
No 42
>smart00602 VPS10 VPS10 domain.
Probab=97.70 E-value=0.0072 Score=59.28 Aligned_cols=59 Identities=17% Similarity=0.139 Sum_probs=32.7
Q ss_pred EEEEecCCCCCCCCCccCCCCCCCCCCCccEEcc-CCe-EEEeeecccCCCCcEEEEEECCCCceeEEee
Q 020796 110 CMKRSYNKGVTWSEREQLPPGILGPSKNKPILLE-NGL-LLCGSSVESWNSWGSWMEVTVDAGRSWRKYG 177 (321)
Q Consensus 110 ~~~~S~D~G~TWs~~~~l~~~~~g~~~~~~~~~~-~G~-~~~~~~~~~~~~~~~~~~~S~D~G~tW~~~~ 177 (321)
.+.+|+|+|+||+... ++... .......+ +.. +++.... +....+++|+|+|+||+...
T Consensus 56 ~ly~S~D~GkTW~~~~-~p~~~----~~~l~~hp~~~~~il~~~~~----~~~~~ly~S~DgG~tW~~i~ 116 (612)
T smart00602 56 YIFISSDEGKSFQKFT-LPFPP----LPSLLYHPKHPDYVLAYSKD----CNYKVLYVSKDFGKTWTEIQ 116 (612)
T ss_pred cEEEeecCCcceeEEE-CCCCC----ccceEECCCCCCEEEEEecC----CCCceEEEEcCCCCCcEEcc
Confidence 4889999999998653 22110 01111111 223 3332111 11136899999999999753
No 43
>cd08983 GH43_4 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-1,4-xylosidase (xylan 1,4-beta-xylosidase; EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanase and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially e
Probab=97.68 E-value=0.032 Score=49.09 Aligned_cols=200 Identities=13% Similarity=0.083 Sum_probs=107.0
Q ss_pred CCccccceEEEe-cCCcEEEEEecCCCC--CCCCcEEEEEEeCCC-CcCCcEEcc-C-CCCCCCCCeEEEEeC-CCcEEE
Q 020796 24 FKSCHASTIVEV-DKGHFLVAYFGGSCE--GAPDVKIWLQTFKDG-RWQSPIIAD-E-EPNVPMWNPVLFKLP-SNGLLL 96 (321)
Q Consensus 24 ~~~~~~p~l~~~-~~g~l~~~~~~~~~~--g~~~~~i~~s~s~~G-tWs~~~~~~-~-~~~~~~~~p~l~~~~-~G~l~l 96 (321)
-...|.|.|+.. ++|+.++++...... +.....|.+.+|.|- +|+.+..+. . ......|.|.++.++ +|+.+|
T Consensus 15 ~~~~rDP~I~r~~~~g~yy~~~T~~~~~~~~~~~~~i~i~~S~DLv~W~~~~~~~~~~~~~~~~WAPev~~d~~~g~y~~ 94 (276)
T cd08983 15 TKGLRDPFILRSHEGGKYYMIATDLKITGQTNGSQYIVVWESTDLVNWTFQRLVKVNPPNAGNTWAPEAFWDAERGQYVV 94 (276)
T ss_pred CCCccCCeEEEcCCCCEEEEEEEecCcCCcccCCCeEEEEECCcccCCcccceeecCCCCcCcEeCccceEcCCCCeEEE
Confidence 366788999988 567777766443211 112345888999997 999887643 2 122346789887765 788888
Q ss_pred EEEeccccC---CceeEE-EEecCCCCCCCCCccCCCCCCCCCCCccEEccCCeEEEeeecccCCCCcEEEEEECCCCce
Q 020796 97 FYKIGQEVQ---KWSGCM-KRSYNKGVTWSEREQLPPGILGPSKNKPILLENGLLLCGSSVESWNSWGSWMEVTVDAGRS 172 (321)
Q Consensus 97 ~~~~~~~~~---~~~~~~-~~S~D~G~TWs~~~~l~~~~~g~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~S~D~G~t 172 (321)
+|+...... .....+ ..++.+-.+|+.+..+.....+.+-..++. .+|..++....+. ...+.+.+|++---.
T Consensus 95 ~~s~~~~~~~~~~~~~~i~~~tt~Df~tft~p~~~~~~~~~~ID~~v~~-~~g~~Yl~~k~~~--~~~i~~~~s~~l~g~ 171 (276)
T cd08983 95 YWSSRLYDNTGGFYNYRLYATTTSDFVTFTEPKVWIDLGANVIDTTVVK-VGGTYYRFYKNEG--SKDIELARSKSLTGP 171 (276)
T ss_pred EEecccCCCCCCCccEEEEEEecCcccccCCCeEeecCCCCeEeeEEEE-eCCEEEEEEecCC--CCcEEEEEeCCCCCC
Confidence 888642210 111122 233334679998877543211222222233 3477665533222 234666777753224
Q ss_pred eEEeeceecCCCCcceeeeeEEEcCC-CeEEEEEeecCCCCcEEEEEeccCCc-CCCC
Q 020796 173 WRKYGPIYIPNESLSVIQPVPFHTAN-RTLRVLMRSFNGIGRVCMSESCDGGL-TWSY 228 (321)
Q Consensus 173 W~~~~~~~~~~~~~~~~~~~~~~~~~-G~l~~~~r~~~~~~~~~~~~S~D~G~-tWs~ 228 (321)
|+...... .......-.|.++...+ |..++++..-.. +.-+...|.|... .|+.
T Consensus 172 ~~~~~~~~-~~~~~~~EgP~v~k~~~~~~y~L~~d~y~~-~~Y~~~~t~d~~~~~~~~ 227 (276)
T cd08983 172 WTIVGTGD-AGWGGAVEGPTVFKLNNGGGWYLYGDNYSG-GGYYPFDTSDLASTSWTK 227 (276)
T ss_pred ceEecccc-cCCCCceeCCeEEEECCCCEEEEEEEECCC-CCeEEEEecCcCCCceec
Confidence 66543110 11111222367777665 577777654322 2333355667533 3543
No 44
>COG4692 Predicted neuraminidase (sialidase) [Carbohydrate transport and metabolism]
Probab=97.61 E-value=0.00032 Score=60.44 Aligned_cols=193 Identities=14% Similarity=0.132 Sum_probs=103.2
Q ss_pred eEEEEeCCCcEEEEEEeccccCCceeEEEEecCCCCCCCCCccCCCCCCCCCCCccE-EccCCeEEEeeecccCCCCcEE
Q 020796 84 PVLFKLPSNGLLLFYKIGQEVQKWSGCMKRSYNKGVTWSEREQLPPGILGPSKNKPI-LLENGLLLCGSSVESWNSWGSW 162 (321)
Q Consensus 84 p~l~~~~~G~l~l~~~~~~~~~~~~~~~~~S~D~G~TWs~~~~l~~~~~g~~~~~~~-~~~~G~~~~~~~~~~~~~~~~~ 162 (321)
+.+...++|++.+.|-.+...+.-+.++..+.-.-..|.+|..+.....+...++.. ..+++-|++...+..+.-+...
T Consensus 36 aflhrl~~gtlv~awF~gt~eg~~D~~~s~~a~~~n~w~~pqrlsa~~~~s~~npvlf~~sdnlwLF~t~~n~~~~~~~~ 115 (381)
T COG4692 36 AFLHRLPDGTLVCAWFGGTLEGKSDIFLSVLASSLNSWGEPQRLSADFSHSEQNPVLFKASDNLWLFHTSQNQDECRIRM 115 (381)
T ss_pred HhhhcccccceechhhcccccCccchheeeehhhhcccCCcceeeeccCccccCceEEecCCceEEEEccCCcceeeeee
Confidence 445566889988877655444444444555555567999999887543222233333 3455533333222222223445
Q ss_pred EEEECCCCceeEEeeceecC-CCCcce-eeeeEEEcCCCeEEE-EEeecC--------CCCcEEEEEeccCCcCCCCCcc
Q 020796 163 MEVTVDAGRSWRKYGPIYIP-NESLSV-IQPVPFHTANRTLRV-LMRSFN--------GIGRVCMSESCDGGLTWSYAKP 231 (321)
Q Consensus 163 ~~~S~D~G~tW~~~~~~~~~-~~~~~~-~~~~~~~~~~G~l~~-~~r~~~--------~~~~~~~~~S~D~G~tWs~~~~ 231 (321)
...|.|.+.+|+...++..+ --..|| +...++..++|..++ +||.-. ...+..+..|.|.|++|+-..
T Consensus 116 ~~~e~d~~~~~~~~a~lgn~l~lprg~~i~~~lv~~s~GaW~~~i~~~~~~pg~i~~~~~~ra~v~~s~d~gk~wr~~~- 194 (381)
T COG4692 116 ATKERDAHDPTRLIAKLGNYLDLPRGCFIRAPLVGRSDGAWLLPIFRCIQRPGQIWNGSHDRAAVGPSLDLGKSWRLKD- 194 (381)
T ss_pred eeeccccCCchhhhhccCCchhccCCCceeeeEEEecccchhhhhhhhhcCcccccCchhhhcccccccccCceeeecc-
Confidence 67788999999987544211 011232 344455556776444 444211 123578889999999998632
Q ss_pred CCCCCCCCceeE--EEcCCCcEEEEEeCCCCCeEEEEEEcCCCCCCCcce
Q 020796 232 TQLLNPNSGIDG--VKLKDGRLLLAYNTVSRGVLKVALSKDDGDSWHDAL 279 (321)
Q Consensus 232 ~~~~~~~~~~~~--~~~~~g~~~lv~~~~~r~~l~~~~S~D~G~tW~~~~ 279 (321)
++ ...+.+.+ ...-+++..++++......++-..+.|.|++|..+.
T Consensus 195 ln--~s~g~v~l~p~~~~~t~y~al~~~~q~~~~~~~el~~~~r~~~~~Q 242 (381)
T COG4692 195 LN--TSDGCVHLSPYHEGDTQYAALFRRRQADNVYRCELLDGGRTWSQPQ 242 (381)
T ss_pred cc--ccCccEecChhhcccccchhhhhhhhcCCeeeeeeccCcccccCcC
Confidence 21 11222221 122345555666433223333345667777777665
No 45
>smart00640 Glyco_32 Glycosyl hydrolases family 32.
Probab=97.61 E-value=0.032 Score=52.57 Aligned_cols=199 Identities=13% Similarity=0.156 Sum_probs=103.7
Q ss_pred cccce-EEEecCCcEEEEEecCCC-CCCCCcEEEEEEeCCC-CcCC-cEEccCCC---CCCCCCeEEEEeCCCcEEEEEE
Q 020796 27 CHAST-IVEVDKGHFLVAYFGGSC-EGAPDVKIWLQTFKDG-RWQS-PIIADEEP---NVPMWNPVLFKLPSNGLLLFYK 99 (321)
Q Consensus 27 ~~~p~-l~~~~~g~l~~~~~~~~~-~g~~~~~i~~s~s~~G-tWs~-~~~~~~~~---~~~~~~p~l~~~~~G~l~l~~~ 99 (321)
...|- |+.. +|+.++.|.-... ...+.+....++|+|. +|+. +..+.+.. ...+..+..+.+ +|+++++|+
T Consensus 9 ~NDPnGl~~~-~G~yHlFyq~~p~~~~~g~~~Wgha~S~Dlv~W~~~~~aL~P~~~~d~~g~~sGsav~~-~~~~~~~YT 86 (437)
T smart00640 9 MNDPNGLIYY-KGKYHLFYQYNPFGPVWGNIHWGHAVSKDLVHWTHLPVALAPDEWYDSNGVFSGSAVID-PGNLSLLYT 86 (437)
T ss_pred cCCCCeeeEE-CCEEEEEEecCCCCCCCCCeEEEEEEcCCcceeeecCcccCCCCcCCCCcEEEEEEEEC-CCceEEEEc
Confidence 34455 5444 6899987744322 1122455677889998 9986 44454432 123566766554 567999998
Q ss_pred ecccc------CCceeEEEEecCCCCCCCCC--ccC-CCCC---CCCCCCccEEccC-CeEEEeeecccCCCCcEEEEEE
Q 020796 100 IGQEV------QKWSGCMKRSYNKGVTWSER--EQL-PPGI---LGPSKNKPILLEN-GLLLCGSSVESWNSWGSWMEVT 166 (321)
Q Consensus 100 ~~~~~------~~~~~~~~~S~D~G~TWs~~--~~l-~~~~---~g~~~~~~~~~~~-G~~~~~~~~~~~~~~~~~~~~S 166 (321)
..... ......+..|+|+|.+|++. .++ .+.. ....+.+-+...+ |++++.............++++
T Consensus 87 g~~~~~~~~~~~~~~~~~~ass~d~~~w~k~~~~Pvi~~~p~~~~~~fRDP~Vf~~~~~~~~m~~g~~~~~~~G~i~ly~ 166 (437)
T smart00640 87 GNVAIDTNVQVQRQAQQLAASDDLGGTWTKYPGNPVLVPPPGIGTEHFRDPKVFWYDGDKWYMVIGASDEDKTGIALLYR 166 (437)
T ss_pred CCcccccccCcccEEEEEEEECCCCCeeEECCCCcEEeCCCCCCCCCcCCCCccEECCCEEEEEEEEEecCCCeEEEEEE
Confidence 53211 11222366788889999874 222 2211 1112322232334 4765543221112223345555
Q ss_pred CCCCceeEEeeceecCC-CCc-ceee-eeEEEcCCC----eEEEEEeecCCCCcEEEEEeccCC-cCCCC
Q 020796 167 VDAGRSWRKYGPIYIPN-ESL-SVIQ-PVPFHTANR----TLRVLMRSFNGIGRVCMSESCDGG-LTWSY 228 (321)
Q Consensus 167 ~D~G~tW~~~~~~~~~~-~~~-~~~~-~~~~~~~~G----~l~~~~r~~~~~~~~~~~~S~D~G-~tWs~ 228 (321)
+++..+|+...++..++ ... ...| |.++.+++. +-++++...+.....|..-+.| | .+|.+
T Consensus 167 S~Dl~~W~~~~~~~~~~~~~~g~~wECPdlf~l~~~~~~~~~vLi~s~~g~~~~~y~~G~~~-g~~~f~~ 235 (437)
T smart00640 167 STDLKNWTLLGELLHSGVGDTGGMWECPDLFPLPGDGDTSKHVLKVSPQGGSGNYYFVGYFD-GSDQFTP 235 (437)
T ss_pred CCCcccCeECCcccccCCCCccceEECCcEEEeCCCCCceeEEEEECcCCCCccEEEEEEEc-CceeEeE
Confidence 56789999877653321 111 2233 677777541 5455554332223455554555 4 46764
No 46
>cd08983 GH43_4 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-1,4-xylosidase (xylan 1,4-beta-xylosidase; EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanase and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially e
Probab=97.54 E-value=0.053 Score=47.75 Aligned_cols=189 Identities=11% Similarity=0.012 Sum_probs=99.3
Q ss_pred CCCCCCeEEEEe-CCCcEEEEEEeccc----cCCceeEEEEecCCCCCCCCCccCCC--CCCCC-CCCccEEcc-CCeEE
Q 020796 78 NVPMWNPVLFKL-PSNGLLLFYKIGQE----VQKWSGCMKRSYNKGVTWSEREQLPP--GILGP-SKNKPILLE-NGLLL 148 (321)
Q Consensus 78 ~~~~~~p~l~~~-~~G~l~l~~~~~~~----~~~~~~~~~~S~D~G~TWs~~~~l~~--~~~g~-~~~~~~~~~-~G~~~ 148 (321)
.....+|.++.. .+|+-+++++.... .+.....+.+|+| -.+|+....+.. ...+. ..+.++-.+ +|+.+
T Consensus 15 ~~~~rDP~I~r~~~~g~yy~~~T~~~~~~~~~~~~~i~i~~S~D-Lv~W~~~~~~~~~~~~~~~~WAPev~~d~~~g~y~ 93 (276)
T cd08983 15 TKGLRDPFILRSHEGGKYYMIATDLKITGQTNGSQYIVVWESTD-LVNWTFQRLVKVNPPNAGNTWAPEAFWDAERGQYV 93 (276)
T ss_pred CCCccCCeEEEcCCCCEEEEEEEecCcCCcccCCCeEEEEECCc-ccCCcccceeecCCCCcCcEeCccceEcCCCCeEE
Confidence 345778999887 56777777764211 0122344667766 689998876531 11121 222333333 57765
Q ss_pred EeeecccCC----CCcEEEEEEC-CCCceeEEeeceecCCCCcceeeeeEEEcCCCeEEEEEeecCCCCcEEEEEeccCC
Q 020796 149 CGSSVESWN----SWGSWMEVTV-DAGRSWRKYGPIYIPNESLSVIQPVPFHTANRTLRVLMRSFNGIGRVCMSESCDGG 223 (321)
Q Consensus 149 ~~~~~~~~~----~~~~~~~~S~-D~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~~~r~~~~~~~~~~~~S~D~G 223 (321)
+........ .....++.++ .+..+|+.+.++. . ...+.+.+.++..+ |+.++++.... ...+.+++|.+--
T Consensus 94 ~~~s~~~~~~~~~~~~~~i~~~tt~Df~tft~p~~~~-~-~~~~~ID~~v~~~~-g~~Yl~~k~~~-~~~i~~~~s~~l~ 169 (276)
T cd08983 94 VYWSSRLYDNTGGFYNYRLYATTTSDFVTFTEPKVWI-D-LGANVIDTTVVKVG-GTYYRFYKNEG-SKDIELARSKSLT 169 (276)
T ss_pred EEEecccCCCCCCCccEEEEEEecCcccccCCCeEee-c-CCCCeEeeEEEEeC-CEEEEEEecCC-CCcEEEEEeCCCC
Confidence 543222111 1122233332 3567899765442 2 23466777877764 89999886543 2567888887743
Q ss_pred cCCCCCccC-CC-CCCCCceeEEEcCC-CcEEEEEeCCCCCeEEEEEEcCC
Q 020796 224 LTWSYAKPT-QL-LNPNSGIDGVKLKD-GRLLLAYNTVSRGVLKVALSKDD 271 (321)
Q Consensus 224 ~tWs~~~~~-~~-~~~~~~~~~~~~~~-g~~~lv~~~~~r~~l~~~~S~D~ 271 (321)
-.|+..... .. .....++.+.+..+ |..+|.+..-.........|.|-
T Consensus 170 g~~~~~~~~~~~~~~~~EgP~v~k~~~~~~y~L~~d~y~~~~Y~~~~t~d~ 220 (276)
T cd08983 170 GPWTIVGTGDAGWGGAVEGPTVFKLNNGGGWYLYGDNYSGGGYYPFDTSDL 220 (276)
T ss_pred CCceEecccccCCCCceeCCeEEEECCCCEEEEEEEECCCCCeEEEEecCc
Confidence 346543321 00 11122345555554 57777765322223344556654
No 47
>PF02012 BNR: BNR/Asp-box repeat; InterPro: IPR002860 Members of this entry contain multiple BNR (bacterial neuraminidase repeat) repeats or Asp-boxes. The repeats are short, however the repeats are never found closer than 40 residues together suggesting that the repeat is structurally longer. These repeats are found in a variety of non-homologous proteins, including bacterial ribonucleases, sulphite oxidases, reelin, netrins, sialidases, neuraminidases, some lipoprotein receptors, and a variety of glycosyl hydrolases [].; PDB: 2JKB_A 2VW0_A 2VW2_A 2VW1_A 2CN2_D 2CN3_B 2VK7_B 2VK5_A 2VK6_A 2BF6_A ....
Probab=97.50 E-value=8.1e-05 Score=31.90 Aligned_cols=12 Identities=33% Similarity=0.938 Sum_probs=9.6
Q ss_pred EEECCCCceeEE
Q 020796 164 EVTVDAGRSWRK 175 (321)
Q Consensus 164 ~~S~D~G~tW~~ 175 (321)
++|+|+|+||++
T Consensus 1 ~~S~D~G~TW~~ 12 (12)
T PF02012_consen 1 YYSTDGGKTWKK 12 (12)
T ss_dssp EEESSTTSS-EE
T ss_pred CEeCCCcccCcC
Confidence 589999999984
No 48
>cd08990 GH43_AXH_like Glycosyl hydrolase family 43, includes arabinoxylan arabinofuranohydrolase, beta-xylosidase, endo-1,4-beta-xylanase, alpha-L-arabinofuranosidase. This glycosyl hydrolase family 43 (GH43) includes enzymes that have been characterized with beta-xylosidase (EC 3.2.1.37), alpha-L-arabinofuranosidase (EC 3.2.1.55), endo-alpha-L-arabinanase as well as arabinoxylan arabinofuranohydrolase (AXH) activities. These are all inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. AXHs specifically hydrolyze the glycosidic bond between arabinofuranosyl substituents and xylopyranosyl backbone residues of
Probab=97.46 E-value=0.066 Score=46.97 Aligned_cols=216 Identities=12% Similarity=0.057 Sum_probs=110.7
Q ss_pred ceEEEecCCcEEEEEecCCCCCC-----CCcEEEEEEeCCC-CcCCcEEc-c--CCC---CCCCCCeEEEEeCCCcEEEE
Q 020796 30 STIVEVDKGHFLVAYFGGSCEGA-----PDVKIWLQTFKDG-RWQSPIIA-D--EEP---NVPMWNPVLFKLPSNGLLLF 97 (321)
Q Consensus 30 p~l~~~~~g~l~~~~~~~~~~g~-----~~~~i~~s~s~~G-tWs~~~~~-~--~~~---~~~~~~p~l~~~~~G~l~l~ 97 (321)
|+++... |++++.. .....+. ....+.+..|+|. +|+....+ . ..+ ....+.|.+... +|+.+|+
T Consensus 3 P~~~~~~-~~yy~~~-t~~~~~~~~~~~~~~~~~v~~S~Dl~~W~~~g~~l~~~~~~~~~~~~~wAP~i~~~-~g~yy~y 79 (274)
T cd08990 3 PAAHVFN-GRVYIYT-SHDEAGGGGDDFCMNDYHVFSSPDLVNWTDHGVILSVTDFPAWAKGQAWAPDVVEK-NGKYYLY 79 (274)
T ss_pred CCcEEEC-CEEEEEe-CCCCCCCCCCccccceEEEEECCCCCCcEECcccccCCCCCccccCCcCcCeEEEE-CCEEEEE
Confidence 6777654 7777643 3222111 1123667778887 99875433 2 112 245788988764 7899999
Q ss_pred EEeccccCCceeEEEEecCCCCCCCCCccCC--C---CCCCCCCCccEEccCCeEEEeeecccCCCCcEEEEEECCCCce
Q 020796 98 YKIGQEVQKWSGCMKRSYNKGVTWSEREQLP--P---GILGPSKNKPILLENGLLLCGSSVESWNSWGSWMEVTVDAGRS 172 (321)
Q Consensus 98 ~~~~~~~~~~~~~~~~S~D~G~TWs~~~~l~--~---~~~g~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~S~D~G~t 172 (321)
|............+.+|+|-...|+....+. . .....+-+.+++..||+.++.... ...+.+....++..+
T Consensus 80 y~~~~~~~~~~igva~s~~p~Gpw~~~~~~~~~~~~~~~~~~iDp~vf~d~dG~~yl~~~~----~~~~~~~~l~~d~~~ 155 (274)
T cd08990 80 FPARDKDGGFAIGVAVSDSPAGPFKDAGGPILITTPSGGWYSIDPAVFIDDDGQAYLYWGG----GLGLRVAKLKPDMLS 155 (274)
T ss_pred EEeecCCCceEEEEEEeCCCCCCCCCCCCccccccCCCCCCccCCcEEECCCCCEEEEECC----cCCEEEEEeCccccc
Confidence 8864221223445778877555688765432 1 111112222344456887664211 123445544445677
Q ss_pred eEEeec-eec----CCCCcceee-eeEEEcCCCeEEEEEeecCCCCcEEEEEeccCCcCCCCCccC-C---CCCCCCcee
Q 020796 173 WRKYGP-IYI----PNESLSVIQ-PVPFHTANRTLRVLMRSFNGIGRVCMSESCDGGLTWSYAKPT-Q---LLNPNSGID 242 (321)
Q Consensus 173 W~~~~~-~~~----~~~~~~~~~-~~~~~~~~G~l~~~~r~~~~~~~~~~~~S~D~G~tWs~~~~~-~---~~~~~~~~~ 242 (321)
|..... +.. .....+..| |.++. .+|+.++++.... ...+.+++|++----|+....+ . ..++. ...
T Consensus 156 ~~~~~~~i~~~~~~~~~~~~~~EgP~i~k-~~G~YYl~yS~~~-~~~~~~a~s~~p~GP~~~~g~~~~~~~~~g~g-h~~ 232 (274)
T cd08990 156 LKGEPVEIVITDGAGDELRRFFEAPWVHK-RNGTYYLSYSTGD-PEEIAYATSDSPLGPFTYRGVILDPPVNGGTN-HGS 232 (274)
T ss_pred cCCCcEEEEeccccCCCCCCcccceeEEE-ECCEEEEEEECCC-CcEEEEEEcCCCCCCcccCcEEecCCCCCCCC-CCe
Confidence 754321 211 011122333 55555 4689999876543 3556667776554345432111 1 11111 122
Q ss_pred EEEcCCCcEEEEEe
Q 020796 243 GVKLKDGRLLLAYN 256 (321)
Q Consensus 243 ~~~~~~g~~~lv~~ 256 (321)
++. .+|+.+|+|.
T Consensus 233 ~~~-~~g~~y~~yh 245 (274)
T cd08990 233 IVE-FKGQWYLFYH 245 (274)
T ss_pred EEE-ECCeEEEEEE
Confidence 344 3488888875
No 49
>cd08981 GH43_2 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-1,4-xylosidase (xylan 1,4-beta-xylosidase; EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanase and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially e
Probab=97.39 E-value=0.088 Score=46.72 Aligned_cols=245 Identities=15% Similarity=0.131 Sum_probs=119.1
Q ss_pred ccccceEEEec-CCcEEEEEecCCCC-CCCCcEEEEEEeCCC-CcCCcEEcc-CCC----CCCCCCeEEEEeCCCcEEEE
Q 020796 26 SCHASTIVEVD-KGHFLVAYFGGSCE-GAPDVKIWLQTFKDG-RWQSPIIAD-EEP----NVPMWNPVLFKLPSNGLLLF 97 (321)
Q Consensus 26 ~~~~p~l~~~~-~g~l~~~~~~~~~~-g~~~~~i~~s~s~~G-tWs~~~~~~-~~~----~~~~~~p~l~~~~~G~l~l~ 97 (321)
..|.|.|+..+ +|+.+++....... +.....|.+.+|+|- +|+....+. ..+ ....+.|.+.. .+|+.+++
T Consensus 5 ~~~DP~v~~~~~~g~yYl~~T~~~~~~~~~~~gi~v~~S~DLv~W~~~g~~~~~~~~~~~~~~~WAP~v~~-~~G~yyly 83 (291)
T cd08981 5 RIRDPFILADPETGTYYLYGTTDPNIWGGEGTGFDVYKSKDLKDWEGPYPVFRPPDDFWADDNFWAPEVHE-YKGRYYMF 83 (291)
T ss_pred cccCCEEEEECCCCEEEEEEecCccccccCCCcEEEEECCChhcccccceeeccCCCcCccccccCCeeee-eCCEEEEE
Confidence 46889999875 56677654322111 111224778889996 999865433 211 13467898865 48999988
Q ss_pred EEecccc-CCceeEEEEecCCCCCCCCCc--cCCCCCCCCCCCccEEccCCeEEEeeecccC---CCCcEEEEE-ECCCC
Q 020796 98 YKIGQEV-QKWSGCMKRSYNKGVTWSERE--QLPPGILGPSKNKPILLENGLLLCGSSVESW---NSWGSWMEV-TVDAG 170 (321)
Q Consensus 98 ~~~~~~~-~~~~~~~~~S~D~G~TWs~~~--~l~~~~~g~~~~~~~~~~~G~~~~~~~~~~~---~~~~~~~~~-S~D~G 170 (321)
|...... ......+..|++=---|+.+. .+.+.....+-+..++..||++++.... .+ ....+.+.. +.|..
T Consensus 84 ~s~~~~~~~~~~~~va~s~~p~GP~~~~~~~~~~~~~~~~iDp~~f~DdDG~~Yl~~~~-~~~~~~~~~i~~~eL~~d~~ 162 (291)
T cd08981 84 ATFHNPGGERRGTAILVSDSPEGPFVPHSDGPVTPEDWMCLDGTLYVDEDGKPWMVFCH-EWVQVYDGTIEAVRLSPDLS 162 (291)
T ss_pred EEeccCCCceeeEEEEECCCCCCCCEeCCCCccCCCCCceEcCceEEcCCCCEEEEEEe-cccccCCCCEEEEEeCCCcc
Confidence 8753221 112345666654323466543 1222111112233445567988765321 11 111233333 33322
Q ss_pred c--------------eeEEeeceecCCCCcceee-eeEEEcCCCeEEEEEeec-CCCCcEEEEEeccC--CcCCCCCc-c
Q 020796 171 R--------------SWRKYGPIYIPNESLSVIQ-PVPFHTANRTLRVLMRSF-NGIGRVCMSESCDG--GLTWSYAK-P 231 (321)
Q Consensus 171 ~--------------tW~~~~~~~~~~~~~~~~~-~~~~~~~~G~l~~~~r~~-~~~~~~~~~~S~D~--G~tWs~~~-~ 231 (321)
+ .|.........+......| |.+...++|++++++... .....+.+++|+.+ =--|+... +
T Consensus 163 ~~~ge~~~i~~~~~~~w~~~~~~~~~~~~~~~~EgP~i~k~~~G~YYl~yS~~~~~~Y~~~~~rs~s~~~~GPy~~~~~p 242 (291)
T cd08981 163 RAIGEPVLLFRASEAPWVREFGLIGRGSGGYVTDGPFLYRTKSGRLLMLWSSFSDGGYAQGVARSESGTLLGPWVQEPEP 242 (291)
T ss_pred ccCCceEEEecCCcCCcccccccccccCCCeEeeCCEEEEeCCCcEEEEEEecCCCCEEEEEEEcCCCCccCCcEECCCc
Confidence 1 1211100000000001122 456655688988877532 22245666666541 11255422 2
Q ss_pred CCCCCCCCceeEEEcCCCcEEEEEeCC----CCCeEEEEEEcCCCC
Q 020796 232 TQLLNPNSGIDGVKLKDGRLLLAYNTV----SRGVLKVALSKDDGD 273 (321)
Q Consensus 232 ~~~~~~~~~~~~~~~~~g~~~lv~~~~----~r~~l~~~~S~D~G~ 273 (321)
+-..++. ...++...+|+.++++... .|..+.+-+|.++++
T Consensus 243 i~~~~~G-H~s~v~~~~G~~~~vyH~~~~~~~~~~~~~~~~~~~~~ 287 (291)
T cd08981 243 LISDDGG-HGMLFRTFDGRLMLSLHTPNKHPDERPIFIEVDEDGDK 287 (291)
T ss_pred ccCCCCC-CCeeEEcCCCCEEEEEECCCCCCCeeeEEEEEeecCCe
Confidence 1111222 1245667789999988532 445556667776654
No 50
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=97.28 E-value=0.093 Score=44.74 Aligned_cols=210 Identities=13% Similarity=0.136 Sum_probs=91.3
Q ss_pred eeEEecCCCCCCCccccceEEEecCCcEEEEEecCCCCCCCCcEEEEEEeC-CC-CcCCcEEccC-CCCCC-----CCCe
Q 020796 13 EEFTFPANSAPFKSCHASTIVEVDKGHFLVAYFGGSCEGAPDVKIWLQTFK-DG-RWQSPIIADE-EPNVP-----MWNP 84 (321)
Q Consensus 13 ~~~~f~~~~~~~~~~~~p~l~~~~~g~l~~~~~~~~~~g~~~~~i~~s~s~-~G-tWs~~~~~~~-~~~~~-----~~~p 84 (321)
|.-||+=.++||..+....-+..-++-+++-|..+.++|-.+..|...+|. || ||+.|+.+.+ .|.++ ++..
T Consensus 1 ~g~L~kiTdTp~YnAWtQDKaFVy~~VIYAPfM~~~RHGv~~LhvaWVkSgDdG~TWttPEwLtd~H~~yptvnyHCmSM 80 (367)
T PF12217_consen 1 QGELFKITDTPYYNAWTQDKAFVYDNVIYAPFMAGDRHGVDNLHVAWVKSGDDGQTWTTPEWLTDLHPDYPTVNYHCMSM 80 (367)
T ss_dssp SEEEEE----SSEEE--TT--EEETTEEEEEEEEESSSSSTT-EEEEEEESSTTSS----EESS---TTTTTEEEE-B-E
T ss_pred CCceeeeecCccccccccccceeecCeeecccccccccCccceEEEEEEecCCCCcccCchhhhhcCCCCCccceeeeee
Confidence 345788778887776665566666788999999888889888888888886 58 9999998864 23322 2222
Q ss_pred EEEEeCCCcEEEEEEeccccCCc-eeE--EEEecCCCCCCCCCcc--CCCCCC-CCC--C-CccEEccCCeEEEeeeccc
Q 020796 85 VLFKLPSNGLLLFYKIGQEVQKW-SGC--MKRSYNKGVTWSEREQ--LPPGIL-GPS--K-NKPILLENGLLLCGSSVES 155 (321)
Q Consensus 85 ~l~~~~~G~l~l~~~~~~~~~~~-~~~--~~~S~D~G~TWs~~~~--l~~~~~-g~~--~-~~~~~~~~G~~~~~~~~~~ 155 (321)
.++ ..+|+++.....-.... ..+ ..|-.=.-.-|+.... ++.-.. +.. + ++-....+.. +...++.+
T Consensus 81 Gv~---~NRLfa~iEtR~~a~~km~~~~Lw~RpMF~~spW~~teL~~~~~~~~a~~~vTe~HSFa~i~~~~-fA~GyHnG 156 (367)
T PF12217_consen 81 GVV---GNRLFAVIETRTVASNKMVRAELWSRPMFHDSPWRITELGTIASFTSAGVAVTELHSFATIDDNQ-FAVGYHNG 156 (367)
T ss_dssp EEE---TTEEEEEEEEEETTT--EEEEEEEEEE-STTS--EEEEEES-TT--------SEEEEEEE-SSS--EEEEEEE-
T ss_pred eee---cceeeEEEeehhhhhhhhhhhhhhcccccccCCceeeecccccccccccceeeeeeeeeEecCCc-eeEEeccC
Confidence 222 46787765432111110 000 1111112233443221 111000 000 0 0111222333 33334432
Q ss_pred C-CCCcEEEEEECC---CCceeEEeeceecCCCCcceeeeeEEEcCCCeEEEEEeecCC-CCcEEEEEeccCCcCCCCC
Q 020796 156 W-NSWGSWMEVTVD---AGRSWRKYGPIYIPNESLSVIQPVPFHTANRTLRVLMRSFNG-IGRVCMSESCDGGLTWSYA 229 (321)
Q Consensus 156 ~-~~~~~~~~~S~D---~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~~~r~~~~-~~~~~~~~S~D~G~tWs~~ 229 (321)
. ....+.+++-.| .+....... ++. .-.....||.+-.. +|.|++..|...+ .-.-.+.+|.|.|++|+..
T Consensus 157 D~sPRe~G~~yfs~~~~sp~~~vrr~-i~s-ey~~~AsEPCvkyY-~g~LyLtTRgt~~~~~GS~L~rs~d~G~~w~sl 232 (367)
T PF12217_consen 157 DVSPRELGFLYFSDAFASPGVFVRRI-IPS-EYERNASEPCVKYY-DGVLYLTTRGTLPTNPGSSLHRSDDNGQNWSSL 232 (367)
T ss_dssp SSSS-EEEEEEETTTTT-TT--EEEE---G-GG-TTEEEEEEEEE-TTEEEEEEEES-TTS---EEEEESSTTSS-EEE
T ss_pred CCCcceeeEEEecccccCCcceeeee-chh-hhccccccchhhhh-CCEEEEEEcCcCCCCCcceeeeecccCCchhhc
Confidence 2 223444444443 344444322 211 11124568887655 5899998887643 1123457899999999864
No 51
>PF02012 BNR: BNR/Asp-box repeat; InterPro: IPR002860 Members of this entry contain multiple BNR (bacterial neuraminidase repeat) repeats or Asp-boxes. The repeats are short, however the repeats are never found closer than 40 residues together suggesting that the repeat is structurally longer. These repeats are found in a variety of non-homologous proteins, including bacterial ribonucleases, sulphite oxidases, reelin, netrins, sialidases, neuraminidases, some lipoprotein receptors, and a variety of glycosyl hydrolases [].; PDB: 2JKB_A 2VW0_A 2VW2_A 2VW1_A 2CN2_D 2CN3_B 2VK7_B 2VK5_A 2VK6_A 2BF6_A ....
Probab=97.26 E-value=0.00014 Score=31.22 Aligned_cols=12 Identities=33% Similarity=0.567 Sum_probs=9.2
Q ss_pred EEecCCCCCCCC
Q 020796 112 KRSYNKGVTWSE 123 (321)
Q Consensus 112 ~~S~D~G~TWs~ 123 (321)
++|+|+|+||++
T Consensus 1 ~~S~D~G~TW~~ 12 (12)
T PF02012_consen 1 YYSTDGGKTWKK 12 (12)
T ss_dssp EEESSTTSS-EE
T ss_pred CEeCCCcccCcC
Confidence 479999999973
No 52
>cd08998 GH43_ABN_1 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes mostly enzymes with alpha-L-arabinofuranosidase (AFN; EC 3.2.1.55) and endo-alpha-L-arabinanase (ABN; EC 3.2.1.99) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. The GH43 ABN enzymes hydrolyze alpha-1,5-L-arabinofuranoside linkages while the ABF enzymes cleave arabinose side chains so that the combined actions of these two enzymes reduce arabinan to L-arabinose and/or arabinooligosaccharides. These arabinan-degrading enzymes are important in the food industry for efficient production of L-arabinose from agricultural waste; L-arabinose is often used as a bioactive sweetener. A common structural feature of GH43 enzymes is a 5-b
Probab=97.19 E-value=0.14 Score=45.19 Aligned_cols=188 Identities=13% Similarity=0.115 Sum_probs=97.0
Q ss_pred cccceEEEecCCcEEEEEecCCCCCCCCcEEEEEEeCCC-CcCCcEE-ccCC----------CCCCCCCeEEEEeCCCcE
Q 020796 27 CHASTIVEVDKGHFLVAYFGGSCEGAPDVKIWLQTFKDG-RWQSPII-ADEE----------PNVPMWNPVLFKLPSNGL 94 (321)
Q Consensus 27 ~~~p~l~~~~~g~l~~~~~~~~~~g~~~~~i~~s~s~~G-tWs~~~~-~~~~----------~~~~~~~p~l~~~~~G~l 94 (321)
+|.|+|+... |+.++.. ... .|.+.+|+|. +|+.... +... .....+.|.+... +|+.
T Consensus 1 ~~DP~v~~~~-~~yyl~~-t~~-------~i~i~~S~Dl~~W~~~g~~~~~~~~~~~~~~~~~~~~~wAP~v~~~-~g~y 70 (288)
T cd08998 1 VHDPSIIKEG-DTYYLFS-TGN-------GIAIAKSKDLGNWTYVGSVFPTGPPWWSSIDPGGSGNLWAPDVIYL-NGKY 70 (288)
T ss_pred CCCCeEEEEC-CEEEEEE-cCC-------CeEEEECCCCCCcEECCccccCCCccccccccCCCCCccCCeEEEE-CCEE
Confidence 4789998776 6777643 321 4778899987 9986543 2221 1235678988765 8999
Q ss_pred EEEEEecccc-CCceeEEEEecCC-CCCCCCCccCCC-CC--C--CCCCCccEEccCCeEEEeeecccCCCCcEEEE-EE
Q 020796 95 LLFYKIGQEV-QKWSGCMKRSYNK-GVTWSEREQLPP-GI--L--GPSKNKPILLENGLLLCGSSVESWNSWGSWME-VT 166 (321)
Q Consensus 95 ~l~~~~~~~~-~~~~~~~~~S~D~-G~TWs~~~~l~~-~~--~--g~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~-~S 166 (321)
+|+|...... ......+..|+|- -..|+....+.. +. . ..+.+.++...+|+.++.. ...+ ..+.+. .+
T Consensus 71 yl~ys~~~~~~~~~~i~va~s~~~~~gpw~~~~~v~~~~~~~~~~~~iDp~vf~d~dG~~Yl~~-~~~~--~~i~~~~l~ 147 (288)
T cd08998 71 YLYYSVSTFGSNRSAIGLATSDTLPDGPWTDHGIVIESGPGRDDPNAIDPNVFYDEDGKLWLSF-GSFW--GGIFLVELD 147 (288)
T ss_pred EEEEEEEeCCCCceEEEEEEeCCCCCCCCEEcceeeecCCCCCCcccccCCEEEcCCCCEEEEe-eecc--CCEEEEEeC
Confidence 9999864221 2233457788775 357987654322 11 0 1122233444478876642 2111 123333 33
Q ss_pred CCCCc--eeE-EeeceecCCCCcceee-eeEEEcCCCeEEEEEeecC------CCCcEEEEEeccCCcCCCC
Q 020796 167 VDAGR--SWR-KYGPIYIPNESLSVIQ-PVPFHTANRTLRVLMRSFN------GIGRVCMSESCDGGLTWSY 228 (321)
Q Consensus 167 ~D~G~--tW~-~~~~~~~~~~~~~~~~-~~~~~~~~G~l~~~~r~~~------~~~~~~~~~S~D~G~tWs~ 228 (321)
.|.|+ .|. ....+.......+..| |.++. .+|..++++.... ....+.+++|++----|+.
T Consensus 148 ~~~~~~~~~~~~~~~i~~~~~~~~~~Egp~~~k-~~g~YYl~~S~~~~~~~~~~~y~v~~~~s~~~~GP~~~ 218 (288)
T cd08998 148 PKTGKPLYPGGYGYNIAGRPRGHGAIEAPYIIY-RGGYYYLFVSYGGCCAGEDSTYNIRVGRSKSITGPYVD 218 (288)
T ss_pred cccCCccCCCCcceEEeccCCCCCceeeeEEEE-eCCEEEEEEEcchhcCCCCCceEEEEEEcCCCCCCcCC
Confidence 34343 221 0111111110112334 45554 4688888764321 1224666777653334553
No 53
>PF00251 Glyco_hydro_32N: Glycosyl hydrolases family 32 N-terminal domain; InterPro: IPR013148 This domain corresponds to the N-terminal domain of glycosyl transferase family 32 which forms a five bladed beta propeller structure []. ; PDB: 2AEZ_A 2ADE_A 2ADD_A 1ST8_A 2AEY_A 3UGG_A 3UGH_B 3UGF_B 1Y9M_A 1Y4W_A ....
Probab=96.97 E-value=0.056 Score=48.40 Aligned_cols=221 Identities=19% Similarity=0.292 Sum_probs=114.1
Q ss_pred CeEEEEeCCCcEEEEEEeccccCCce---eEEEEecCCCCCCCCCcc-CCCCC----CCCCCCccEEccCCeEEEeeecc
Q 020796 83 NPVLFKLPSNGLLLFYKIGQEVQKWS---GCMKRSYNKGVTWSEREQ-LPPGI----LGPSKNKPILLENGLLLCGSSVE 154 (321)
Q Consensus 83 ~p~l~~~~~G~l~l~~~~~~~~~~~~---~~~~~S~D~G~TWs~~~~-l~~~~----~g~~~~~~~~~~~G~~~~~~~~~ 154 (321)
+|.-..--+|+.+|||........+. =..++|+| -.+|+.... |.++. .|+..+.+++. ++++++. |+.
T Consensus 11 DPnG~~~~~G~yHlFyQ~~P~~~~~g~~~WgHa~S~D-lv~W~~~~~aL~P~~~~d~~g~~SGs~~~~-~~~~~~~-YTg 87 (308)
T PF00251_consen 11 DPNGLVYYDGKYHLFYQYNPFGPEWGNMHWGHATSKD-LVHWEHLPVALPPDEEYDADGCFSGSAVVD-DDNLVLF-YTG 87 (308)
T ss_dssp EEEEEEEETTEEEEEEEEETTSSSS-SBEEEEEEESS-SSSEEEEEEEE-SSSGGGTTEEEEEEEEEE-TTCEEEE-EEE
T ss_pred CCccCeEeCCEEEEEeccCCCCcccceeEEEEEECCC-CCCceeCCceEcccccCCcCccCcceEEEE-CCEEEEE-Eec
Confidence 45322235899999998644322221 13567776 589986543 34432 22233344443 4455433 221
Q ss_pred c-CC-CCcEEEEEECCCCceeEEe---eceec---CCCCcceeeeeEEEcCCCeEEEEEeec-CCCCcEEEEEeccCCcC
Q 020796 155 S-WN-SWGSWMEVTVDAGRSWRKY---GPIYI---PNESLSVIQPVPFHTANRTLRVLMRSF-NGIGRVCMSESCDGGLT 225 (321)
Q Consensus 155 ~-~~-~~~~~~~~S~D~G~tW~~~---~~~~~---~~~~~~~~~~~~~~~~~G~l~~~~r~~-~~~~~~~~~~S~D~G~t 225 (321)
. .. .....+++|+|+|.+|++. .++.. .+.......|.++...+|+.+|+.-.. ...+.+.+.+|+| ..+
T Consensus 88 ~~~~~~~~q~~A~s~d~~~~w~k~~~~~pvi~~~p~~~~~~~RDP~v~~~~~~~~~m~~g~~~~~~g~i~~y~S~D-l~~ 166 (308)
T PF00251_consen 88 NNRDGKQVQCLAYSTDDGITWTKYPQGNPVIPEPPPGDTTDFRDPKVFWREDGRWYMLLGAGRDGRGCILLYTSDD-LIH 166 (308)
T ss_dssp EETTTEEEEEEEEESSTTSSEEE-TTTCESBESSSTTSCTSEEEEEEEEECTTEEEEEEEEEETTEEEEEEEEESS-SSS
T ss_pred cCCCCCeEEEEEEECCCCCceEEcCCCCcEEEecccCCCCccccCeEEEecCCEEEEEEeccccCcceEEEEEcCC-ccc
Confidence 1 11 2345789999999999994 34432 123345567888666778877776433 2345677788877 789
Q ss_pred CCCCccCCCCCC-CCc----eeEEEcCCC-c------EEEEEeCC----CCCeEEEEE-EcC-CCCCCCc----ceeecc
Q 020796 226 WSYAKPTQLLNP-NSG----IDGVKLKDG-R------LLLAYNTV----SRGVLKVAL-SKD-DGDSWHD----ALTLEE 283 (321)
Q Consensus 226 Ws~~~~~~~~~~-~~~----~~~~~~~~g-~------~~lv~~~~----~r~~l~~~~-S~D-~G~tW~~----~~~l~~ 283 (321)
|+....+..... ... +.+..+.+. . ++|++... ........+ ..| ++.+|.. ...++.
T Consensus 167 W~~~~~l~~~~~~~g~~~ECPdlf~l~~~~~~~~~~~~vl~~s~~g~~~~~~~~~Y~vG~~d~~~~~f~~~~~~~~~lD~ 246 (308)
T PF00251_consen 167 WEYLGPLFIPGDNGGGMWECPDLFPLDGKGDGTGKWVWVLIFSPQGIEDNGHGTYYMVGDFDFDGGTFTPDDSSFQRLDY 246 (308)
T ss_dssp EEEEEEESEEETTTSSEEEEEEEEEEEBTTSSSEEEEEEEEEEEESTTTTTTEEEEEEEEEETTTTEEEESSTTSEESBS
T ss_pred CceeCcccccccccccccccceEEEECCcccccceEEEEEEecccccccccccceEEeEEecCCCCeeeeeccccceecc
Confidence 987554322211 111 234454443 3 34554431 122223333 222 6777743 344443
Q ss_pred cCCCceeceE-EEEccCC--eEEEEEEeCC
Q 020796 284 NLAMEFSYPA-VIQASDG--SVHITYTYNR 310 (321)
Q Consensus 284 ~~~~~~~yp~-~~~~~dg--~l~v~y~~~~ 310 (321)
+. + -|.. .....++ ++.+.|..+.
T Consensus 247 G~--d-fYA~qtf~~~~~~r~i~~gW~~~~ 273 (308)
T PF00251_consen 247 GF--D-FYAPQTFYDPDGGRRILIGWMGEW 273 (308)
T ss_dssp SS--S--EEEEEEEETTTTEEEEEEEES-T
T ss_pred Cc--c-ccCCchhcCCCcCcEEEEEEecCC
Confidence 32 2 3444 4444444 6778887754
No 54
>COG4409 NanH Neuraminidase (sialidase) [Carbohydrate transport and metabolism]
Probab=96.97 E-value=0.079 Score=51.39 Aligned_cols=43 Identities=26% Similarity=0.349 Sum_probs=31.3
Q ss_pred CeEEEEeCCCcEEEEEEeccc-----cCCceeEEEEecCCCCCCCCCc
Q 020796 83 NPVLFKLPSNGLLLFYKIGQE-----VQKWSGCMKRSYNKGVTWSERE 125 (321)
Q Consensus 83 ~p~l~~~~~G~l~l~~~~~~~-----~~~~~~~~~~S~D~G~TWs~~~ 125 (321)
.|++...++|+++..|..... ...-..+..+|+|+|+||.+|.
T Consensus 277 iP~~~t~sNg~VlsswDar~~~t~D~~~~~~i~~s~SdD~GkTW~~p~ 324 (728)
T COG4409 277 IPVLYTLSNGTVLSSWDARYANTGDQKQPINIAASYSDDNGKTWHKPE 324 (728)
T ss_pred cceeeccCCceEEEeccccccccccccccCceEEEEEccCCcccccce
Confidence 588888889999988764211 1112356789999999999976
No 55
>PF04041 DUF377: Domain of unknown function (DUF377); InterPro: IPR007184 Glycosidases or glycosyl hydrolases are a big and widespread family of enzymes that hydrolyse the glycosidic bonds between carbohydrates or between a carbohydrate and an aglycone moiety. On the basis of sequence and structural similarity, the glycoside hydrolase family belongs to the beta-fructosidase (furanosidase) superfamily of glycosyl hydrolases. This leads to the prediction that proteins of this family have a glycosidase (glycoside hydrolase) activity and, most probably, act on a furanoside residue (fructose, arabinose and ribose). Crystal structure from Thermotoga maritima a member of this family, determined to high-resolution by Structural Genomics initiatives, reveals a five-bladed beta-propeller fold with three acidic residues forming the active site.; PDB: 1VKD_A 3TAW_A 3QC2_B 3R67_B.
Probab=96.92 E-value=0.26 Score=44.20 Aligned_cols=165 Identities=18% Similarity=0.253 Sum_probs=82.6
Q ss_pred CCCCeEEEEeCCC-cEEEEEEeccc-cCCceeEEEEecCCCCCCCCCcc--CCCCC----CCCCCCccEEccCCeEEEee
Q 020796 80 PMWNPVLFKLPSN-GLLLFYKIGQE-VQKWSGCMKRSYNKGVTWSEREQ--LPPGI----LGPSKNKPILLENGLLLCGS 151 (321)
Q Consensus 80 ~~~~p~l~~~~~G-~l~l~~~~~~~-~~~~~~~~~~S~D~G~TWs~~~~--l~~~~----~g~~~~~~~~~~~G~~~~~~ 151 (321)
...||..+...++ +++++|..... .......+.+|+|+ .+|+.... +.+.. .|+--.+++.. +++.++..
T Consensus 31 ~vfNpgai~~~~~~R~~l~yr~~~~~~~~~~iglA~S~DG-i~f~~~~~pil~P~~~~e~~GvEDPRVt~i-~d~yymtY 108 (312)
T PF04041_consen 31 AVFNPGAIVFDGGLRVYLLYRAYGSDIGSSRIGLARSDDG-IHFERDPEPILYPDTDYEEWGVEDPRVTKI-DDTYYMTY 108 (312)
T ss_dssp EEEEEEEEEETTE--EEEEEEEEESSSSEEEEEEEEESSS-SS-EE-SS-SBEE-SSTTHTEEEEEEEEEE-TTEEEEEE
T ss_pred eEEcCcEEEECCeeEEEEEEEeECCCCceeEEEEEEccCC-cCceECCCCEEccCCCCcccCccceeEEEE-CCEEEEEE
Confidence 4567877654444 27777654222 11113457889875 78853321 11211 22111233333 56655432
Q ss_pred ecccCCCCcEEEEEECCCCceeEEeeceecCCC----------CcceeeeeEEEcCCCeEEEEEeecCCCCcEEEEEecc
Q 020796 152 SVESWNSWGSWMEVTVDAGRSWRKYGPIYIPNE----------SLSVIQPVPFHTANRTLRVLMRSFNGIGRVCMSESCD 221 (321)
Q Consensus 152 ~~~~~~~~~~~~~~S~D~G~tW~~~~~~~~~~~----------~~~~~~~~~~~~~~G~l~~~~r~~~~~~~~~~~~S~D 221 (321)
......+....+..|+ +..+|+....+..... ..+..-|.- -+|+++++.| ...++++.|.|
T Consensus 109 ta~~~~~~~~~la~s~-D~~~~~r~g~~~~~~~~~~~~~~~~~kd~~lfp~k---i~Gky~m~~r----~~~i~la~S~D 180 (312)
T PF04041_consen 109 TAYSGKGPRIGLATSK-DFKHWERHGKIFPPFNGNEDYRDFWSKDGALFPEK---INGKYAMLHR----DPSIWLAYSPD 180 (312)
T ss_dssp EEEESSSEEEEEEEES-SSSSEEEEECTTTTTCTS-EEEEEEEECCEEEESE---ETTEEEEEEE----SSSBEEEEESS
T ss_pred EEecCCCcccceEEcc-chHhhEEeccccCcccccccccccccCceEEEEEE---ECCEEEEEEC----CCCEEEEecCC
Confidence 1122234455666666 5799998763321111 112222221 2789999998 36789999966
Q ss_pred CCcCCCCCcc-CCCCCC----CC----ceeEEEcCCCcEEEEEe
Q 020796 222 GGLTWSYAKP-TQLLNP----NS----GIDGVKLKDGRLLLAYN 256 (321)
Q Consensus 222 ~G~tWs~~~~-~~~~~~----~~----~~~~~~~~~g~~~lv~~ 256 (321)
+..|..... +-.+.+ .. +...+.+++| ++++|.
T Consensus 181 -l~~W~~~~~~~~~~~~~~~d~~kiG~g~pPi~t~~G-wL~iyH 222 (312)
T PF04041_consen 181 -LIHWGNHREPLLSPRPGWWDSSKIGAGPPPIKTDEG-WLLIYH 222 (312)
T ss_dssp -SSSEEEEBETSB--STTSSCSSEEEE-S-EEEETTE-EEEEEE
T ss_pred -cccccccccccccCCCCcChhhcccCCCCceEecCC-EEEEEe
Confidence 799987543 211111 11 1233667778 666666
No 56
>cd08991 GH43_bXyl_2 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes that have been characterized with xylan-digesting beta-xylosidase (EC 3.2.1.37) and xylanase (endo-alpha-L-arabinanase) activities. These are all inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller.
Probab=96.86 E-value=0.3 Score=43.26 Aligned_cols=193 Identities=10% Similarity=0.071 Sum_probs=100.0
Q ss_pred cceEEEecCCcEEEEEecCCCCCCCCcEEEEEEeCCC-CcCCcEE-ccCCC----CCCCCCeEEEEeCCCcEEEEEEecc
Q 020796 29 ASTIVEVDKGHFLVAYFGGSCEGAPDVKIWLQTFKDG-RWQSPII-ADEEP----NVPMWNPVLFKLPSNGLLLFYKIGQ 102 (321)
Q Consensus 29 ~p~l~~~~~g~l~~~~~~~~~~g~~~~~i~~s~s~~G-tWs~~~~-~~~~~----~~~~~~p~l~~~~~G~l~l~~~~~~ 102 (321)
.|+|+... |+.+++.... .. ...|.+.+|+|. +|+.... +...+ ....+.|.++.. +|+.+|+|+...
T Consensus 2 DP~v~~~~-g~yyl~~t~~-~~---~~~i~~~~S~Dl~~W~~~~~~~~~~~~~~~~~~~waP~v~~~-~g~yyl~ys~~~ 75 (294)
T cd08991 2 DPFVLRYN-GKYYAYGTGG-AD---GRGFAVYSSPDLVDWKLHGGALLALDDDWGRRGFWAPEVYYY-NGKFYMYYSAND 75 (294)
T ss_pred CCeEEEEC-CEEEEEEeCC-CC---CCeeEEEECCCCCCceECCccccCCCCCccCCcEEccEEEEE-CCEEEEEEEecc
Confidence 47888776 7777754332 11 123677889997 9987543 22211 235677888765 699999998642
Q ss_pred cc-CCceeEEEEecCCCCCCCCCcc--CCCCCCCCCCCccEEccCCeEEEeeecccCCC--CcEEEEEECCCCceeEEee
Q 020796 103 EV-QKWSGCMKRSYNKGVTWSEREQ--LPPGILGPSKNKPILLENGLLLCGSSVESWNS--WGSWMEVTVDAGRSWRKYG 177 (321)
Q Consensus 103 ~~-~~~~~~~~~S~D~G~TWs~~~~--l~~~~~g~~~~~~~~~~~G~~~~~~~~~~~~~--~~~~~~~S~D~G~tW~~~~ 177 (321)
.. ......+..|+|--..|+.... +..+. ..+.+.++...||+.++......... ..+.+..-..++.+|....
T Consensus 76 ~~~~~~~i~~a~s~~p~gp~~~~~~~~~~~~~-~~iD~~vf~d~dG~~yl~~~~~~~~~~~~~i~~~~l~~d~~~~~~~~ 154 (294)
T cd08991 76 RDEKTEHIGVAVSDSPLGPFRDIKKPPIDFEP-KSIDAHPFIDDDGKPYLYYSRNNYGNRVSDIYGTELVDDKLSIKTEL 154 (294)
T ss_pred CCCCcceEEEEEeCCCCCCCCcCCCCcccCCC-cccCCceEECCCCCEEEEEEecCCCCcccceEEEEEccceeeeccce
Confidence 21 2234567788765445765432 22211 12333445556688766532211111 1233333333455554221
Q ss_pred c---eecC-------------C--CCcceee-eeEEEcCCCeEEEEEeecCC---CCcEEEEEeccCCcCCCCC
Q 020796 178 P---IYIP-------------N--ESLSVIQ-PVPFHTANRTLRVLMRSFNG---IGRVCMSESCDGGLTWSYA 229 (321)
Q Consensus 178 ~---~~~~-------------~--~~~~~~~-~~~~~~~~G~l~~~~r~~~~---~~~~~~~~S~D~G~tWs~~ 229 (321)
. +... + ......| |.++.. +|.+++++..... ...+.+++|++---.|+..
T Consensus 155 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~EgP~~~k~-~g~yyl~ys~~~~~~~~y~~~~a~s~~~~gp~~~~ 227 (294)
T cd08991 155 VGPPIPVSAPGIDEIFERWRFGEGKDWRTNEGPTVLKH-NGRYYLTYSANHYENEDYGVGYATADSPLGPWTKY 227 (294)
T ss_pred eeccccccccccccccccccccccccCceeeCcEEEEE-CCEEEEEEECCCCCCCCceEEEEEcCCCCCCcEec
Confidence 0 0000 0 0112233 455554 6888888754321 2256677887644568764
No 57
>cd08991 GH43_bXyl_2 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes that have been characterized with xylan-digesting beta-xylosidase (EC 3.2.1.37) and xylanase (endo-alpha-L-arabinanase) activities. These are all inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller.
Probab=96.78 E-value=0.24 Score=43.91 Aligned_cols=180 Identities=13% Similarity=0.149 Sum_probs=91.4
Q ss_pred CccccceEEEecCCcEEEEEecCCCCCCCCcEEEEEEeCC--CCcCCcEEccCCCCCCCCCeEEEEeCCCcEEEEEEecc
Q 020796 25 KSCHASTIVEVDKGHFLVAYFGGSCEGAPDVKIWLQTFKD--GRWQSPIIADEEPNVPMWNPVLFKLPSNGLLLFYKIGQ 102 (321)
Q Consensus 25 ~~~~~p~l~~~~~g~l~~~~~~~~~~g~~~~~i~~s~s~~--GtWs~~~~~~~~~~~~~~~p~l~~~~~G~l~l~~~~~~ 102 (321)
.....|.|+... |+.++.|..... +.....|.++++++ |.|+.........+....+|.++.+.+|+.+|+|....
T Consensus 53 ~~~waP~v~~~~-g~yyl~ys~~~~-~~~~~~i~~a~s~~p~gp~~~~~~~~~~~~~~~iD~~vf~d~dG~~yl~~~~~~ 130 (294)
T cd08991 53 RGFWAPEVYYYN-GKFYMYYSANDR-DEKTEHIGVAVSDSPLGPFRDIKKPPIDFEPKSIDAHPFIDDDGKPYLYYSRNN 130 (294)
T ss_pred CcEEccEEEEEC-CEEEEEEEeccC-CCCcceEEEEEeCCCCCCCCcCCCCcccCCCcccCCceEECCCCCEEEEEEecC
Confidence 345679998765 888876655432 22345677888875 56775321111122234578999888899999987422
Q ss_pred ccCC-ceeEEEEecCCCCCCCCCccC---C---CC--------C------CCCCCCccEEccCCeEEEeeecccC--CCC
Q 020796 103 EVQK-WSGCMKRSYNKGVTWSEREQL---P---PG--------I------LGPSKNKPILLENGLLLCGSSVESW--NSW 159 (321)
Q Consensus 103 ~~~~-~~~~~~~S~D~G~TWs~~~~l---~---~~--------~------~g~~~~~~~~~~~G~~~~~~~~~~~--~~~ 159 (321)
.... ....+..-..++.+|...... . ++ . ....+++.+...+|..++....... ...
T Consensus 131 ~~~~~~~i~~~~l~~d~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~EgP~~~k~~g~yyl~ys~~~~~~~~y 210 (294)
T cd08991 131 YGNRVSDIYGTELVDDKLSIKTELVGPPIPVSAPGIDEIFERWRFGEGKDWRTNEGPTVLKHNGRYYLTYSANHYENEDY 210 (294)
T ss_pred CCCcccceEEEEEccceeeeccceeeccccccccccccccccccccccccCceeeCcEEEEECCEEEEEEECCCCCCCCc
Confidence 1111 122333333345555422110 0 00 0 0113344455557887665332211 123
Q ss_pred cEEEEEECCCCceeEEe--eceecCCC---CcceeeeeEEEcCC-CeEEEEEe
Q 020796 160 GSWMEVTVDAGRSWRKY--GPIYIPNE---SLSVIQPVPFHTAN-RTLRVLMR 206 (321)
Q Consensus 160 ~~~~~~S~D~G~tW~~~--~~~~~~~~---~~~~~~~~~~~~~~-G~l~~~~r 206 (321)
.+.+++|++---.|+.. .++..... ..+.-+.+++..++ |+.++++.
T Consensus 211 ~~~~a~s~~~~gp~~~~~~~pl~~~~~~~~~~g~gh~~~~~~~~g~~~~~~yh 263 (294)
T cd08991 211 GVGYATADSPLGPWTKYSNNPILRRNGDKGVEGTGHNSVVKSPDGGELYIVYH 263 (294)
T ss_pred eEEEEEcCCCCCCcEecCCCceEeeCCCCceEeCCCCceEECCCCCEEEEEEe
Confidence 56677887544568764 23322111 12222345666666 56666554
No 58
>smart00640 Glyco_32 Glycosyl hydrolases family 32.
Probab=96.74 E-value=0.3 Score=45.99 Aligned_cols=146 Identities=19% Similarity=0.266 Sum_probs=79.2
Q ss_pred CCCeE-EEEeCCCcEEEEEEeccccCCce---eEEEEecCCCCCCCCCc-cCCCCC----CCCCCCccEEccCCeEEEee
Q 020796 81 MWNPV-LFKLPSNGLLLFYKIGQEVQKWS---GCMKRSYNKGVTWSERE-QLPPGI----LGPSKNKPILLENGLLLCGS 151 (321)
Q Consensus 81 ~~~p~-l~~~~~G~l~l~~~~~~~~~~~~---~~~~~S~D~G~TWs~~~-~l~~~~----~g~~~~~~~~~~~G~~~~~~ 151 (321)
..+|. ++.. +|+.+|||+.......|. -..+.|+ +..+|+... .|.++. .|+..+.++.. +|++.+.
T Consensus 9 ~NDPnGl~~~-~G~yHlFyq~~p~~~~~g~~~Wgha~S~-Dlv~W~~~~~aL~P~~~~d~~g~~sGsav~~-~~~~~~~- 84 (437)
T smart00640 9 MNDPNGLIYY-KGKYHLFYQYNPFGPVWGNIHWGHAVSK-DLVHWTHLPVALAPDEWYDSNGVFSGSAVID-PGNLSLL- 84 (437)
T ss_pred cCCCCeeeEE-CCEEEEEEecCCCCCCCCCeEEEEEEcC-CcceeeecCcccCCCCcCCCCcEEEEEEEEC-CCceEEE-
Confidence 34455 3333 899999998543222221 1355666 489997643 344431 23333444443 4544332
Q ss_pred eccc---CC---C--CcEEEEEECCCCceeEEe--eceecCCC---CcceeeeeEEEcCCCeEEEEEeec--CCCCcEEE
Q 020796 152 SVES---WN---S--WGSWMEVTVDAGRSWRKY--GPIYIPNE---SLSVIQPVPFHTANRTLRVLMRSF--NGIGRVCM 216 (321)
Q Consensus 152 ~~~~---~~---~--~~~~~~~S~D~G~tW~~~--~~~~~~~~---~~~~~~~~~~~~~~G~l~~~~r~~--~~~~~~~~ 216 (321)
|... .. . ....+..|+|+|.+|++. .|+..+.. ......|.+...++|+.+|++... ...+.+.+
T Consensus 85 YTg~~~~~~~~~~~~~~~~~~ass~d~~~w~k~~~~Pvi~~~p~~~~~~fRDP~Vf~~~~~~~~m~~g~~~~~~~G~i~l 164 (437)
T smart00640 85 YTGNVAIDTNVQVQRQAQQLAASDDLGGTWTKYPGNPVLVPPPGIGTEHFRDPKVFWYDGDKWYMVIGASDEDKTGIALL 164 (437)
T ss_pred EcCCcccccccCcccEEEEEEEECCCCCeeEECCCCcEEeCCCCCCCCCcCCCCccEECCCEEEEEEEEEecCCCeEEEE
Confidence 2211 01 1 122367888999999986 35532211 123445777665556777766432 23466887
Q ss_pred EEeccCCcCCCCCcc
Q 020796 217 SESCDGGLTWSYAKP 231 (321)
Q Consensus 217 ~~S~D~G~tWs~~~~ 231 (321)
..|+| .++|+....
T Consensus 165 y~S~D-l~~W~~~~~ 178 (437)
T smart00640 165 YRSTD-LKNWTLLGE 178 (437)
T ss_pred EECCC-cccCeECCc
Confidence 88876 789986544
No 59
>cd08985 GH43_6 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-1,4-xylosidase (xylan 1,4-beta-xylosidase; EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanase and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially e
Probab=96.70 E-value=0.37 Score=42.11 Aligned_cols=146 Identities=12% Similarity=0.122 Sum_probs=85.4
Q ss_pred CccccceEEEec-CCcEEEEEecCCCCCCCCcEEEEEEeC--CCCcCCcEEccCCCCCCCCCeEEEEeCCCcEEEEEEec
Q 020796 25 KSCHASTIVEVD-KGHFLVAYFGGSCEGAPDVKIWLQTFK--DGRWQSPIIADEEPNVPMWNPVLFKLPSNGLLLFYKIG 101 (321)
Q Consensus 25 ~~~~~p~l~~~~-~g~l~~~~~~~~~~g~~~~~i~~s~s~--~GtWs~~~~~~~~~~~~~~~p~l~~~~~G~l~l~~~~~ 101 (321)
.....|.|+..+ +|+.++ |+.....+.....|.+++++ .|-|+....+.+ .+....+|.++.+.||+.+|+|...
T Consensus 63 ~~~waP~v~y~~~~g~Y~m-~~~~~~~~~~~~~igvA~Sd~p~Gpf~~~~~~~~-~~~~~~Dp~vf~DdDG~~Yl~~~~~ 140 (265)
T cd08985 63 RIIERPKVIYNAKTGKYVM-WMHIDSSDYSDARVGVATSDTPTGPYTYLGSFRP-LGYQSRDFGLFVDDDGTAYLLYSDR 140 (265)
T ss_pred cEEECCeEEEeCCCCEEEE-EEEeCCCCCcceeEEEEEeCCCCCCCEECCccCC-CCCCccCCceEEcCCCCEEEEEecC
Confidence 456779998876 477665 44432222234467777776 477876443221 2334578999999999999998742
Q ss_pred cccCCceeEEEEecCCCCCCCCCcc-CCCCCCCCCCCccEEccCCeEEEeeecc-cCCCCcEEEEEECCCCceeEEee
Q 020796 102 QEVQKWSGCMKRSYNKGVTWSEREQ-LPPGILGPSKNKPILLENGLLLCGSSVE-SWNSWGSWMEVTVDAGRSWRKYG 177 (321)
Q Consensus 102 ~~~~~~~~~~~~S~D~G~TWs~~~~-l~~~~~g~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~~~~S~D~G~tW~~~~ 177 (321)
. .....+.+-+++..++..... +..+ ...+++.+...+|..++..... .+......+++|++==--|+...
T Consensus 141 ~---~~~i~i~~L~~d~~~~~~~~~~~~~~--~~~EaP~i~K~~g~YYL~~S~~t~~~~~~~~y~~s~s~~GP~~~~~ 213 (265)
T cd08985 141 D---NSDLYIYRLTDDYLSVTGEVTTVFVG--AGREAPAIFKRNGKYYLLTSGLTGWNPNDARYATATSILGPWTDLG 213 (265)
T ss_pred C---CCceEEEEeCCCcccccceEEEccCC--CccccceEEEECCEEEEEEccCCCccCCceEEEEecCCCCCccccC
Confidence 1 123456666667777765433 1111 1245555555677765543322 23344567788876444566554
No 60
>cd08980 GH43_1 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-xylosidase (EC 3.2.1.37) and alpha-L-arabinofuranosidase (EC 3.2.1.55) and possibly bifunctional xylosidase/arabinofuranosidase activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller.
Probab=96.69 E-value=0.36 Score=42.68 Aligned_cols=180 Identities=12% Similarity=0.141 Sum_probs=91.3
Q ss_pred CccccceEEEecCCcEEEEEecCCCCCCCCcEEEEEEeC-----CCCcCCcEEccCCCCCCCCCeEEEEeCCCcEEEEEE
Q 020796 25 KSCHASTIVEVDKGHFLVAYFGGSCEGAPDVKIWLQTFK-----DGRWQSPIIADEEPNVPMWNPVLFKLPSNGLLLFYK 99 (321)
Q Consensus 25 ~~~~~p~l~~~~~g~l~~~~~~~~~~g~~~~~i~~s~s~-----~GtWs~~~~~~~~~~~~~~~p~l~~~~~G~l~l~~~ 99 (321)
....+|.|... +|++++.|......+.....+.+..++ .|.|+.+..+....+....+|.++.+ +|+.|++|.
T Consensus 53 ~~~WAP~i~~~-~g~yylyys~~~~~~~~~~~~~v~~a~~~~~~~Gpw~~~~~~~~~~~~~~iDp~~~~d-dG~~Yl~~~ 130 (288)
T cd08980 53 GNLWAPELHYI-DGKWYIYFAAGDGGGNANHRMYVLENAGADPPTGPWTFKGRLADPTDRWAIDGTVFEH-NGQLYFVWS 130 (288)
T ss_pred ccEECceEEEE-CCEEEEEEEccCCCCCcceeEEEEEeCCCCCCCCCceEeeEeccCCCCeeeeeEEEEE-CCEEEEEEE
Confidence 45688999765 588888765432211222234444433 36899886654323334467888887 599999997
Q ss_pred ecccc--CCceeEEEEecCCCCCCC-CCccCCCCC-----C--CCCCCccEEccCCeEEEeeecccC--CCCcEEEEEEC
Q 020796 100 IGQEV--QKWSGCMKRSYNKGVTWS-EREQLPPGI-----L--GPSKNKPILLENGLLLCGSSVESW--NSWGSWMEVTV 167 (321)
Q Consensus 100 ~~~~~--~~~~~~~~~S~D~G~TWs-~~~~l~~~~-----~--g~~~~~~~~~~~G~~~~~~~~~~~--~~~~~~~~~S~ 167 (321)
..... ......+.+..+. .++. ++..+.... . ...+++.+...+|..++....... ..+.+.+++|+
T Consensus 131 ~~~~~~~~~~~i~~~~l~~~-~~~~g~~~~i~~p~~~we~~~~~~~EgP~~~k~~G~yYl~yS~~~~~~~~Y~v~~a~~~ 209 (288)
T cd08980 131 GWEGRTNGNQNLYIAKMSNP-WTLTGPRVLISRPEYDWERQGPGVNEGPAALKRNGKVFLTYSASGSWTPDYCLGLLTAD 209 (288)
T ss_pred ccCCCCCCCccEEEEECCCC-CccCCcceEecCCCCCceecCceeeECcEEEEECCEEEEEEECCCCCCCCCEEEEEEEc
Confidence 42210 1112334454443 2342 333332211 1 123444445557776654332211 23455666665
Q ss_pred CC-C----ceeEEee-ceecCC---CCcceeeeeEEEcCCCe-EEEEEee
Q 020796 168 DA-G----RSWRKYG-PIYIPN---ESLSVIQPVPFHTANRT-LRVLMRS 207 (321)
Q Consensus 168 D~-G----~tW~~~~-~~~~~~---~~~~~~~~~~~~~~~G~-l~~~~r~ 207 (321)
.. + .+|+... ++.... ...+.-+.+++..++|+ .++++..
T Consensus 210 ~~~~~~~~~~~~~~~~pil~~~~~~~~~g~GH~~iv~~~~G~~~~~~yH~ 259 (288)
T cd08980 210 GGADLLDPASWTKSPTPVFQSSPENGVYGPGHNSFTKSPDGTEDWIVYHA 259 (288)
T ss_pred CCCCCCChhhCcCCCCCceecCCCCccCcCCccceEECCCCCEEEEEEcc
Confidence 32 1 3576532 332111 11233345677777786 7777644
No 61
>cd09000 GH43_XYL_1 Glycosyl hydrolase family 43, beta-D-xylosidase. This glycosyl hydrolase family 43 (GH43) includes mostly enzymes that have been characterized to have beta-1,4-xylosidase (beta-D-xylosidase;xylan 1,4-beta-xylosidase; EC 3.2.1.37) activity. They are part of an array of hemicellulases that are involved in the final breakdown of plant cell-wall whereby they degrade xylan. They hydrolyze beta-1,4 glycosidic bonds between two xylose units in short xylooligosaccharides. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extend
Probab=96.57 E-value=0.49 Score=41.81 Aligned_cols=219 Identities=13% Similarity=0.078 Sum_probs=110.4
Q ss_pred ccccceEEEecCCcEEEEEecCCCCCCCCcEEEEEEeCCC-CcCCcEEccCC----------CCCCCCCeEEEEeCCCcE
Q 020796 26 SCHASTIVEVDKGHFLVAYFGGSCEGAPDVKIWLQTFKDG-RWQSPIIADEE----------PNVPMWNPVLFKLPSNGL 94 (321)
Q Consensus 26 ~~~~p~l~~~~~g~l~~~~~~~~~~g~~~~~i~~s~s~~G-tWs~~~~~~~~----------~~~~~~~p~l~~~~~G~l 94 (321)
.+..|+|+..+ |+.+.+ ... .+.. ..|.+.+|+|. +|+....+... .....+.|.++.. +|+.
T Consensus 7 ~~~DP~i~~~~-~~yy~~-~t~-~~~~--~~i~~~~S~Dl~~W~~~g~~~~~~~~~~~~~~~~~~~~WAP~v~~~-~g~y 80 (288)
T cd09000 7 FYPDPSICRVG-DDYYLV-TSS-FEYF--PGVPIFHSKDLVNWELIGHALTRPSQLDLDGLPDSGGIWAPTIRYH-DGTF 80 (288)
T ss_pred CCCCCCEEEEC-CEEEEE-ECC-cccC--CCceEEECCCcCCcEEcccccCCcccccccCCCCCCceEcceEEEE-CCEE
Confidence 34679998877 666643 221 1111 13677888897 99976432210 1224677888765 8999
Q ss_pred EEEEEeccccCCceeEEEEecCCCCCCCCCccCCCCCCCCCCCccEEccCCeEEEeeecccC-----CCCcEEEEEECCC
Q 020796 95 LLFYKIGQEVQKWSGCMKRSYNKGVTWSEREQLPPGILGPSKNKPILLENGLLLCGSSVESW-----NSWGSWMEVTVDA 169 (321)
Q Consensus 95 ~l~~~~~~~~~~~~~~~~~S~D~G~TWs~~~~l~~~~~g~~~~~~~~~~~G~~~~~~~~~~~-----~~~~~~~~~S~D~ 169 (321)
+|+|............+..|+|---.|+.+..+.. ..+-..++...+|+.++....... ....+.+...+.+
T Consensus 81 y~yy~~~~~~~~~~~~v~~s~~p~gpw~~~~~~~~---~~iDp~vf~d~dG~~Y~~~~~~~~~~~~~~~~~i~~~~l~~~ 157 (288)
T cd09000 81 YLITTNVDGMKDGGNFIVTADDPAGPWSDPVWLDS---GGIDPSLFFDDDGKVYLVGNGWDERRGYNGHGGIWLQEIDLE 157 (288)
T ss_pred EEEEEecCCCCCCceEEEEeCCCCCCCcCCEecCC---CccCCceeEcCCCCEEEEecccCCccccCCCCcEEEEEEccc
Confidence 99988632211223456677766556886654432 112233445557887664221100 0123444444332
Q ss_pred CceeE-EeeceecCCCCcceee-eeEEEcCCCeEEEEEeecC--CCCcEEEEEeccCCcCCCCCc--cC-C--------C
Q 020796 170 GRSWR-KYGPIYIPNESLSVIQ-PVPFHTANRTLRVLMRSFN--GIGRVCMSESCDGGLTWSYAK--PT-Q--------L 234 (321)
Q Consensus 170 G~tW~-~~~~~~~~~~~~~~~~-~~~~~~~~G~l~~~~r~~~--~~~~~~~~~S~D~G~tWs~~~--~~-~--------~ 234 (321)
..+.. ....+. .+......| |.++. .+|.+++++.... ....+.+++|++-=-.|+... ++ . .
T Consensus 158 ~~~~~~~~~~~~-~~~~~~~~Egp~v~k-~~g~YYl~ys~~~~~~~~~v~~~~s~~~~Gp~~~~~~~~il~~~~~~~~~~ 235 (288)
T cd09000 158 TGKLLGEPKVIW-NGTGGRWPEGPHLYK-RDGWYYLLIAEGGTGYGHSVTVARSRSITGPYEPAPNNPILTNRDLPDSPI 235 (288)
T ss_pred cCCCCCCcEEEE-eCCCCCCcccCeEEE-ECCEEEEEEecCCCCCCeEEEEEEeCCCCCCCccCCCCceEEcCCCCCCcc
Confidence 22221 111111 111111233 45554 4688888875432 123566677765433576521 11 0 0
Q ss_pred CCCCCceeEEEcCCCcEEEEEe
Q 020796 235 LNPNSGIDGVKLKDGRLLLAYN 256 (321)
Q Consensus 235 ~~~~~~~~~~~~~~g~~~lv~~ 256 (321)
.++. ...++..++|+.+++|.
T Consensus 236 ~g~g-H~~~~~~~dG~~~~~yH 256 (288)
T cd09000 236 QATG-HADLVQTPDGEWWAVFL 256 (288)
T ss_pred eeCC-ccceEECCCCCEEEEEE
Confidence 0111 12356667888888874
No 62
>cd09004 GH43_bXyl Glycosyl hydrolase family 43, includes mostly 1,4-beta-xylanases. This glycosyl hydrolase family 43 (GH43) includes enzymes that have been characterized with xylan-digesting beta-xylosidase (EC 3.2.1.37) and xylanase (endo-alpha-L-arabinanase) activities. These are all inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller.
Probab=96.56 E-value=0.48 Score=41.55 Aligned_cols=217 Identities=12% Similarity=0.079 Sum_probs=116.3
Q ss_pred CCCeEEEEeCCCcEEEEEEeccccCC-ceeEEEEecCCCCCCCCCccCCC-C-----CCCCCCCccEEccCCeEEEeeec
Q 020796 81 MWNPVLFKLPSNGLLLFYKIGQEVQK-WSGCMKRSYNKGVTWSEREQLPP-G-----ILGPSKNKPILLENGLLLCGSSV 153 (321)
Q Consensus 81 ~~~p~l~~~~~G~l~l~~~~~~~~~~-~~~~~~~S~D~G~TWs~~~~l~~-~-----~~g~~~~~~~~~~~G~~~~~~~~ 153 (321)
..+|.++.. +|+-+++.+....... ....+.+|+| -.+|+....+.+ . ..+... +-+...+|++++....
T Consensus 8 ~~DP~i~~~-~g~yY~~~t~~~~~~~~~~~~~~~S~D-l~~W~~~g~~l~~~~~~~~~~~~wA-P~v~~~~g~yy~yys~ 84 (275)
T cd09004 8 YADPEIRIF-GGTYYIYPTSDGAGGEQTPFDVFSSKD-LVNWTKEGIILDMADVSWANRAAWA-PSVIERNGKYYFYFSA 84 (275)
T ss_pred CCCCCeEEE-CCEEEEEEeccCCCCCeeEEEEEECCC-CCCceECcccccccCCcccCCCcCC-CeEEEECCEEEEEEEc
Confidence 567887765 6888877653211110 1223566766 689987665332 1 111222 2233457886654322
Q ss_pred ccCCCCcEEEEEECCCCceeEEe--eceecCC-CCcceeeeeEEEcCCCeEEEEEeecCCCCcEEEEEeccCCcCCCCCc
Q 020796 154 ESWNSWGSWMEVTVDAGRSWRKY--GPIYIPN-ESLSVIQPVPFHTANRTLRVLMRSFNGIGRVCMSESCDGGLTWSYAK 230 (321)
Q Consensus 154 ~~~~~~~~~~~~S~D~G~tW~~~--~~~~~~~-~~~~~~~~~~~~~~~G~l~~~~r~~~~~~~~~~~~S~D~G~tWs~~~ 230 (321)
...+.++.|+|-.-.|+.. .++.... .....+.|.++...+|+.++++... +.+.+....+++.+|....
T Consensus 85 ----~~~i~va~s~~p~gp~~~~~~~p~~~~~~~~~~~iDp~vf~d~dG~~yl~~~~~---~~~~i~~l~~d~~~~~~~~ 157 (275)
T cd09004 85 ----NGGIGVAVADSPLGPFKDALGKPLIDKFTFGAQPIDPDVFIDDDGQAYLYWGGW---GHCNVAKLNEDMISFDGER 157 (275)
T ss_pred ----CCcEEEEEeCCCCCCCCCCCCCccccCCcCCCCccCCCeEECCCCCEEEEEcCc---CCEEEEEECCCcccccCcc
Confidence 1346778888755568762 2222111 1223556788887889998887542 3344444445577786543
Q ss_pred cC-CCC--CCCCceeEEEcCCCcEEEEEeCC----CCCeEEEEEEcCCCCCCCcce--eecccC--CCceeceEEEEcc-
Q 020796 231 PT-QLL--NPNSGIDGVKLKDGRLLLAYNTV----SRGVLKVALSKDDGDSWHDAL--TLEENL--AMEFSYPAVIQAS- 298 (321)
Q Consensus 231 ~~-~~~--~~~~~~~~~~~~~g~~~lv~~~~----~r~~l~~~~S~D~G~tW~~~~--~l~~~~--~~~~~yp~~~~~~- 298 (321)
.. ... ....+..+.. .+|+.+|+|... ....+.++.|.+---.|++.. ++.+.. ..+.++..++..+
T Consensus 158 ~~~~~~~~~~~EgP~i~k-~~G~yyl~ys~~~~~~~~Y~~~ya~s~~~~GP~~~~~~~~~~~~~~~~~g~gH~~~~~~~~ 236 (275)
T cd09004 158 DGSEITPKNYFEGPFMFK-RNGIYYLMWSEGGWTDPDYHVAYAMADSPLGPFERPGNIILQQDPGIATGPGHHSVVNVPG 236 (275)
T ss_pred eeeeccCCCceecceEEE-ECCEEEEEEECCCCCCCCceEEEEEcCCCCCCcccCCcEeeeCCCCCcccCCCCEEEEeCC
Confidence 21 111 1112234444 578888887542 233566777764333477643 332211 1234566777766
Q ss_pred CCeEEEEEEe
Q 020796 299 DGSVHITYTY 308 (321)
Q Consensus 299 dg~l~v~y~~ 308 (321)
+|..+++|-.
T Consensus 237 ~~~~~~~yh~ 246 (275)
T cd09004 237 TDEWYIVYHR 246 (275)
T ss_pred CCeEEEEEeC
Confidence 4788888765
No 63
>cd08998 GH43_ABN_1 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes mostly enzymes with alpha-L-arabinofuranosidase (AFN; EC 3.2.1.55) and endo-alpha-L-arabinanase (ABN; EC 3.2.1.99) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. The GH43 ABN enzymes hydrolyze alpha-1,5-L-arabinofuranoside linkages while the ABF enzymes cleave arabinose side chains so that the combined actions of these two enzymes reduce arabinan to L-arabinose and/or arabinooligosaccharides. These arabinan-degrading enzymes are important in the food industry for efficient production of L-arabinose from agricultural waste; L-arabinose is often used as a bioactive sweetener. A common structural feature of GH43 enzymes is a 5-b
Probab=96.33 E-value=0.69 Score=40.85 Aligned_cols=216 Identities=18% Similarity=0.177 Sum_probs=110.3
Q ss_pred CCeEEEEeCCCcEEEEEEeccccCCceeEEEEecCCCCCCCCCccCCC-CC----------CCCCCCccEEccCCeEEEe
Q 020796 82 WNPVLFKLPSNGLLLFYKIGQEVQKWSGCMKRSYNKGVTWSEREQLPP-GI----------LGPSKNKPILLENGLLLCG 150 (321)
Q Consensus 82 ~~p~l~~~~~G~l~l~~~~~~~~~~~~~~~~~S~D~G~TWs~~~~l~~-~~----------~g~~~~~~~~~~~G~~~~~ 150 (321)
.+|.++.. +|+.+++++.. ...+.+|+|- ..|+....+.. .. .+....+-+...+|++++.
T Consensus 2 ~DP~v~~~-~~~yyl~~t~~------~i~i~~S~Dl-~~W~~~g~~~~~~~~~~~~~~~~~~~~~wAP~v~~~~g~yyl~ 73 (288)
T cd08998 2 HDPSIIKE-GDTYYLFSTGN------GIAIAKSKDL-GNWTYVGSVFPTGPPWWSSIDPGGSGNLWAPDVIYLNGKYYLY 73 (288)
T ss_pred CCCeEEEE-CCEEEEEEcCC------CeEEEECCCC-CCcEECCccccCCCccccccccCCCCCccCCeEEEECCEEEEE
Confidence 46777665 67777775531 3457788875 88976654321 10 0111122233348887654
Q ss_pred eeccc-C-CCCcEEEEEECCC-CceeEEeeceecCC---CCcceeeeeEEEcCCCeEEEEEeecCCCCcEEEEE-eccCC
Q 020796 151 SSVES-W-NSWGSWMEVTVDA-GRSWRKYGPIYIPN---ESLSVIQPVPFHTANRTLRVLMRSFNGIGRVCMSE-SCDGG 223 (321)
Q Consensus 151 ~~~~~-~-~~~~~~~~~S~D~-G~tW~~~~~~~~~~---~~~~~~~~~~~~~~~G~l~~~~r~~~~~~~~~~~~-S~D~G 223 (321)
..... . ....+.++.|+|- --.|+...++...+ .....+.|.++..++|+.++++.... ..++++. +.|.|
T Consensus 74 ys~~~~~~~~~~i~va~s~~~~~gpw~~~~~v~~~~~~~~~~~~iDp~vf~d~dG~~Yl~~~~~~--~~i~~~~l~~~~~ 151 (288)
T cd08998 74 YSVSTFGSNRSAIGLATSDTLPDGPWTDHGIVIESGPGRDDPNAIDPNVFYDEDGKLWLSFGSFW--GGIFLVELDPKTG 151 (288)
T ss_pred EEEEeCCCCceEEEEEEeCCCCCCCCEEcceeeecCCCCCCcccccCCEEEcCCCCEEEEeeecc--CCEEEEEeCcccC
Confidence 32211 1 1234667888775 35798765442221 12245678888888999999875432 3344443 34434
Q ss_pred cC--CC-CCccCCC-C---CCCCceeEEEcCCCcEEEEEeCC-------CCCeEEEEEEcCCCCCCCcc--eee-c----
Q 020796 224 LT--WS-YAKPTQL-L---NPNSGIDGVKLKDGRLLLAYNTV-------SRGVLKVALSKDDGDSWHDA--LTL-E---- 282 (321)
Q Consensus 224 ~t--Ws-~~~~~~~-~---~~~~~~~~~~~~~g~~~lv~~~~-------~r~~l~~~~S~D~G~tW~~~--~~l-~---- 282 (321)
+. |. .+..+.. + ....+..+.+ .+|..+|++... ....+.+++|.+=---|... ..+ .
T Consensus 152 ~~~~~~~~~~~i~~~~~~~~~~Egp~~~k-~~g~YYl~~S~~~~~~~~~~~y~v~~~~s~~~~GP~~~~~g~~~~~~~~~ 230 (288)
T cd08998 152 KPLYPGGYGYNIAGRPRGHGAIEAPYIIY-RGGYYYLFVSYGGCCAGEDSTYNIRVGRSKSITGPYVDRNGNDMLNGGGT 230 (288)
T ss_pred CccCCCCcceEEeccCCCCCceeeeEEEE-eCCEEEEEEEcchhcCCCCCceEEEEEEcCCCCCCcCCCCCCchhhCCCc
Confidence 32 21 1111110 0 0112233343 578999887532 12356677775312224432 111 1
Q ss_pred ----ccCC--CceeceEEEEccCCeEEEEEEe
Q 020796 283 ----ENLA--MEFSYPAVIQASDGSVHITYTY 308 (321)
Q Consensus 283 ----~~~~--~~~~yp~~~~~~dg~l~v~y~~ 308 (321)
+... .+.++..+++.+||..+++|-.
T Consensus 231 ~~~~~~~~~~~g~GH~~~~~~~~g~~~~~yH~ 262 (288)
T cd08998 231 LYLLSSNGGYVGPGHNSVFTDDDGKDYLVYHY 262 (288)
T ss_pred ceeeccCCeEEcCCCCEEEECCCCCEEEEEEE
Confidence 0000 1235667888888888888754
No 64
>cd09000 GH43_XYL_1 Glycosyl hydrolase family 43, beta-D-xylosidase. This glycosyl hydrolase family 43 (GH43) includes mostly enzymes that have been characterized to have beta-1,4-xylosidase (beta-D-xylosidase;xylan 1,4-beta-xylosidase; EC 3.2.1.37) activity. They are part of an array of hemicellulases that are involved in the final breakdown of plant cell-wall whereby they degrade xylan. They hydrolyze beta-1,4 glycosidic bonds between two xylose units in short xylooligosaccharides. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extend
Probab=96.32 E-value=0.69 Score=40.85 Aligned_cols=175 Identities=13% Similarity=0.044 Sum_probs=88.3
Q ss_pred CccccceEEEecCCcEEEEEecCCCCCCCCcEEEEEEeCC--CCcCCcEEccCCCCCCCCCeEEEEeCCCcEEEEEEecc
Q 020796 25 KSCHASTIVEVDKGHFLVAYFGGSCEGAPDVKIWLQTFKD--GRWQSPIIADEEPNVPMWNPVLFKLPSNGLLLFYKIGQ 102 (321)
Q Consensus 25 ~~~~~p~l~~~~~g~l~~~~~~~~~~g~~~~~i~~s~s~~--GtWs~~~~~~~~~~~~~~~p~l~~~~~G~l~l~~~~~~ 102 (321)
....+|.|+.. +|+.++.|...... ....+.+.++++ |.|+++..+.. ...+|.++.+.+|+.|++|....
T Consensus 66 ~~~WAP~v~~~-~g~yy~yy~~~~~~--~~~~~~v~~s~~p~gpw~~~~~~~~----~~iDp~vf~d~dG~~Y~~~~~~~ 138 (288)
T cd09000 66 GGIWAPTIRYH-DGTFYLITTNVDGM--KDGGNFIVTADDPAGPWSDPVWLDS----GGIDPSLFFDDDGKVYLVGNGWD 138 (288)
T ss_pred CceEcceEEEE-CCEEEEEEEecCCC--CCCceEEEEeCCCCCCCcCCEecCC----CccCCceeEcCCCCEEEEecccC
Confidence 34577999876 68888766553221 112344555554 69998765432 44679999988999999987421
Q ss_pred cc----CCceeEEEEecCCCCCC-CCCccCCCCC-CCCCCCccEEccCCeEEEeeeccc-CCCCcEEEEEECCCCceeEE
Q 020796 103 EV----QKWSGCMKRSYNKGVTW-SEREQLPPGI-LGPSKNKPILLENGLLLCGSSVES-WNSWGSWMEVTVDAGRSWRK 175 (321)
Q Consensus 103 ~~----~~~~~~~~~S~D~G~TW-s~~~~l~~~~-~g~~~~~~~~~~~G~~~~~~~~~~-~~~~~~~~~~S~D~G~tW~~ 175 (321)
.. +....++...+....+. +++..+.... ....+++.+...+|..++...... .....+.+++|++==--|+.
T Consensus 139 ~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~Egp~v~k~~g~YYl~ys~~~~~~~~~v~~~~s~~~~Gp~~~ 218 (288)
T cd09000 139 ERRGYNGHGGIWLQEIDLETGKLLGEPKVIWNGTGGRWPEGPHLYKRDGWYYLLIAEGGTGYGHSVTVARSRSITGPYEP 218 (288)
T ss_pred CccccCCCCcEEEEEEccccCCCCCCcEEEEeCCCCCCcccCeEEEECCEEEEEEecCCCCCCeEEEEEEeCCCCCCCcc
Confidence 11 11233454444333333 2222222211 112344444445777655432211 11234667777742224654
Q ss_pred e--eceecCCC-----CcceeeeeEEEcCCCeEEEEEe
Q 020796 176 Y--GPIYIPNE-----SLSVIQPVPFHTANRTLRVLMR 206 (321)
Q Consensus 176 ~--~~~~~~~~-----~~~~~~~~~~~~~~G~l~~~~r 206 (321)
. .++..... ..|.-+.+++..++|+.++++.
T Consensus 219 ~~~~~il~~~~~~~~~~~g~gH~~~~~~~dG~~~~~yH 256 (288)
T cd09000 219 APNNPILTNRDLPDSPIQATGHADLVQTPDGEWWAVFL 256 (288)
T ss_pred CCCCceEEcCCCCCCcceeCCccceEECCCCCEEEEEE
Confidence 2 12221110 1122234566666777666653
No 65
>COG1621 SacC Beta-fructosidases (levanase/invertase) [Carbohydrate transport and metabolism]
Probab=96.25 E-value=0.48 Score=44.76 Aligned_cols=165 Identities=16% Similarity=0.225 Sum_probs=81.0
Q ss_pred EEEecCCcEEEEEecCCC-CCCCCcEEEEEEeCCC-CcCC-cEEccCCC---CCCCCCeEEEEeCCCcEEEEEEeccc--
Q 020796 32 IVEVDKGHFLVAYFGGSC-EGAPDVKIWLQTFKDG-RWQS-PIIADEEP---NVPMWNPVLFKLPSNGLLLFYKIGQE-- 103 (321)
Q Consensus 32 l~~~~~g~l~~~~~~~~~-~g~~~~~i~~s~s~~G-tWs~-~~~~~~~~---~~~~~~p~l~~~~~G~l~l~~~~~~~-- 103 (321)
++... |+.+++|.=... ...+...=.=.+|+|= +|+. |..+.++. ...+..-..+ ..+|++.+||+....
T Consensus 47 ~iy~~-G~yHlFYQ~~P~~~~~g~~~WgHa~S~Dlv~W~~~piaL~Pd~~~d~~g~ySGSAV-~~~~~l~lfytg~v~~~ 124 (486)
T COG1621 47 LIYFD-GKYHLFYQYNPFGAAHGPKHWGHAVSKDLVHWEHLPIALAPDDDYDSHGCYSGSAV-VDDGNLSLFYTGNVRDS 124 (486)
T ss_pred eeEEC-CEEEEEEecCCCCCCCCCceeeeeccCCcccceECCceecCCCccccCCceeeeEE-EeCCcEEEEEccceecc
Confidence 44344 688876522221 1111222223456776 9986 44555433 2223333333 348889999984221
Q ss_pred --cCCceeEEEEecCCCCCCCCC--ccCCCCCCC---CCCCcc-EEccCCeEEEeeecccCCCCcEEEEEECCCCceeEE
Q 020796 104 --VQKWSGCMKRSYNKGVTWSER--EQLPPGILG---PSKNKP-ILLENGLLLCGSSVESWNSWGSWMEVTVDAGRSWRK 175 (321)
Q Consensus 104 --~~~~~~~~~~S~D~G~TWs~~--~~l~~~~~g---~~~~~~-~~~~~G~~~~~~~~~~~~~~~~~~~~S~D~G~tW~~ 175 (321)
.+....++++|+| |.++++. .++.+...+ ..+.+- +-..+|++++..-.++....+..+++++|+.+.|+.
T Consensus 125 ~~~r~~~Q~iA~s~d-g~~f~K~~~~~i~~~p~~~t~hFRDPKv~w~~~~~~~~mlgAq~~~~~g~i~lY~S~DL~~W~~ 203 (486)
T COG1621 125 NGIRQQTQCIAYSED-GGTFEKYSGNPIIDQPEGYTPHFRDPKVVWDEGGKWWMMLGAQGEDLKGTILLYESDDLKNWQF 203 (486)
T ss_pred CCcceeEEEEEEEcC-CCceEeccCCceecCCCcccccCCCCcccccCCCcEEEEEEEecCCCCceEEEEeCCCccCcEE
Confidence 1122357999999 4555552 222221112 223333 333456665443222222223455566666999999
Q ss_pred eeceecCCCCcc-eee-eeEEEcCCC
Q 020796 176 YGPIYIPNESLS-VIQ-PVPFHTANR 199 (321)
Q Consensus 176 ~~~~~~~~~~~~-~~~-~~~~~~~~G 199 (321)
.+.+.......+ ..| |.++.++.-
T Consensus 204 ~g~~~~~~~~~gym~ECPdlf~l~~~ 229 (486)
T COG1621 204 TGEFGLEQGGLGYMWECPDLFELDGE 229 (486)
T ss_pred EEeeccCCCceeeEEECCCeEEecCc
Confidence 886644311222 122 677776543
No 66
>cd09001 GH43_XYL_2 Glycosyl hydrolase family 43, beta-D-xylosidase. This glycosyl hydrolase family 43 (GH43) includes mostly enzymes that have been characterized to have beta-1,4-xylosidase (beta-D-xylosidase;xylan 1,4-beta-xylosidase; EC 3.2.1.37) activity. They are part of an array of hemicellulases that are involved in the final breakdown of plant cell-wall whereby they degrade xylan. They hydrolyze beta-1,4 glycosidic bonds between two xylose units in short xylooligosaccharides. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extend
Probab=96.22 E-value=0.47 Score=41.54 Aligned_cols=163 Identities=10% Similarity=0.029 Sum_probs=82.5
Q ss_pred ccccceEEEecCCcEEEEEecCCCCCCCCcEEEEEEeCCCCcCCcEEccCCCCCCCCCeEEEEeCCCcEEEEEEeccccC
Q 020796 26 SCHASTIVEVDKGHFLVAYFGGSCEGAPDVKIWLQTFKDGRWQSPIIADEEPNVPMWNPVLFKLPSNGLLLFYKIGQEVQ 105 (321)
Q Consensus 26 ~~~~p~l~~~~~g~l~~~~~~~~~~g~~~~~i~~s~s~~GtWs~~~~~~~~~~~~~~~p~l~~~~~G~l~l~~~~~~~~~ 105 (321)
...+|.|... +|+.++.|... ...+.|..+.+-.|-|+.+..+. ...+|.++.+.+|+.+|+|...
T Consensus 75 ~~WAP~v~~~-~gkyy~yys~~----~~~~~v~~a~~p~Gpw~~~~~~~-----~~iDp~~f~D~dG~~Yl~~~~~---- 140 (269)
T cd09001 75 GQWAPSLRYH-NGTFYVFFCTN----TGGTYIYTADDPEGPWTKTALDG-----GYHDPSLLFDDDGTAYLVYGGG---- 140 (269)
T ss_pred CEECCceEEE-CCEEEEEEEec----CCCeEEEEcCCCCCCCcCCCcCC-----CcccCceEEcCCCCEEEEeCCC----
Confidence 3567999876 68888765443 12233333333347888754332 3467889988899999998631
Q ss_pred CceeEEEEecCCCCCCC-CCcc-CCCCC--CCCCCCccEEccCCeEEEeeecccCCCCcEEEEEECCCCceeEEeeceec
Q 020796 106 KWSGCMKRSYNKGVTWS-EREQ-LPPGI--LGPSKNKPILLENGLLLCGSSVESWNSWGSWMEVTVDAGRSWRKYGPIYI 181 (321)
Q Consensus 106 ~~~~~~~~S~D~G~TWs-~~~~-l~~~~--~g~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~S~D~G~tW~~~~~~~~ 181 (321)
...+.+-+.+..+.. .... +.... .+..+++.+...+|..++.............+++|++=---|+... +..
T Consensus 141 --~i~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~Egp~i~k~~G~YYl~~S~~~~~~~~~~~~~s~~~~GP~~~~~-~~~ 217 (269)
T cd09001 141 --TIRLVELSPDLTGVGGKDQVIIDAGEEIGLGAEGSHLYKINGYYYIFNIAWGGGGRTQTCLRSKSLTGPYESKV-VLE 217 (269)
T ss_pred --cEEEEEECcccCCcCCCceEEEeCCCccccccccCeEEEECCEEEEEEecCCCCCceEEEEEeCCCCCCcCCcc-eec
Confidence 334444333444442 2222 22111 1234555555567876554332211223566788875222243322 211
Q ss_pred CC--CCcceeeeeEEEcCCCeEEEEE
Q 020796 182 PN--ESLSVIQPVPFHTANRTLRVLM 205 (321)
Q Consensus 182 ~~--~~~~~~~~~~~~~~~G~l~~~~ 205 (321)
.+ ...+.-+.++++.++|+.++++
T Consensus 218 ~~~~~~~~~gh~~~~~~~~G~~~~~~ 243 (269)
T cd09001 218 DGSTGGNGPHQGGIVDTPDGEWYFML 243 (269)
T ss_pred CCCCCCCCCCCEEEEECCCCCEEEEE
Confidence 11 1111222356677777755543
No 67
>cd09004 GH43_bXyl Glycosyl hydrolase family 43, includes mostly 1,4-beta-xylanases. This glycosyl hydrolase family 43 (GH43) includes enzymes that have been characterized with xylan-digesting beta-xylosidase (EC 3.2.1.37) and xylanase (endo-alpha-L-arabinanase) activities. These are all inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller.
Probab=96.18 E-value=0.79 Score=40.14 Aligned_cols=188 Identities=11% Similarity=0.046 Sum_probs=102.8
Q ss_pred cccceEEEecCCcEEEEEecCCCCCCCCcEEEEEEeCCC-CcCCcEEc-cCC----CCCCCCCeEEEEeCCCcEEEEEEe
Q 020796 27 CHASTIVEVDKGHFLVAYFGGSCEGAPDVKIWLQTFKDG-RWQSPIIA-DEE----PNVPMWNPVLFKLPSNGLLLFYKI 100 (321)
Q Consensus 27 ~~~p~l~~~~~g~l~~~~~~~~~~g~~~~~i~~s~s~~G-tWs~~~~~-~~~----~~~~~~~p~l~~~~~G~l~l~~~~ 100 (321)
.+.|.++... |+.++..... ..+.....+.+.+|+|- +|+....+ ... .....+.|.++.. +|+.+|+|+.
T Consensus 8 ~~DP~i~~~~-g~yY~~~t~~-~~~~~~~~~~~~~S~Dl~~W~~~g~~l~~~~~~~~~~~~wAP~v~~~-~g~yy~yys~ 84 (275)
T cd09004 8 YADPEIRIFG-GTYYIYPTSD-GAGGEQTPFDVFSSKDLVNWTKEGIILDMADVSWANRAAWAPSVIER-NGKYYFYFSA 84 (275)
T ss_pred CCCCCeEEEC-CEEEEEEecc-CCCCCeeEEEEEECCCCCCceECcccccccCCcccCCCcCCCeEEEE-CCEEEEEEEc
Confidence 5679998765 7888754222 11211234667788886 99976543 221 1235778988765 6999999875
Q ss_pred ccccCCceeEEEEecCCCCCCCCC--ccC-CCCCCC--CCCCccEEccCCeEEEeeecccCCCCcEEEEEECCCCceeEE
Q 020796 101 GQEVQKWSGCMKRSYNKGVTWSER--EQL-PPGILG--PSKNKPILLENGLLLCGSSVESWNSWGSWMEVTVDAGRSWRK 175 (321)
Q Consensus 101 ~~~~~~~~~~~~~S~D~G~TWs~~--~~l-~~~~~g--~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~S~D~G~tW~~ 175 (321)
. ....+..|+|-...|+.. .++ .....+ .+.+.++...+|++++.. .. .....+...++++.+|..
T Consensus 85 ~-----~~i~va~s~~p~gp~~~~~~~p~~~~~~~~~~~iDp~vf~d~dG~~yl~~-~~---~~~~~i~~l~~d~~~~~~ 155 (275)
T cd09004 85 N-----GGIGVAVADSPLGPFKDALGKPLIDKFTFGAQPIDPDVFIDDDGQAYLYW-GG---WGHCNVAKLNEDMISFDG 155 (275)
T ss_pred C-----CcEEEEEeCCCCCCCCCCCCCccccCCcCCCCccCCCeEECCCCCEEEEE-cC---cCCEEEEEECCCcccccC
Confidence 2 235677888755678762 122 211111 122223344578876542 21 013445455566777764
Q ss_pred eece-ecCCCCcceee-eeEEEcCCCeEEEEEeecC---CCCcEEEEEeccCCcCCCCC
Q 020796 176 YGPI-YIPNESLSVIQ-PVPFHTANRTLRVLMRSFN---GIGRVCMSESCDGGLTWSYA 229 (321)
Q Consensus 176 ~~~~-~~~~~~~~~~~-~~~~~~~~G~l~~~~r~~~---~~~~~~~~~S~D~G~tWs~~ 229 (321)
.... .... ....| |.++. .+|..++++.... ....+.+++|++---.|+..
T Consensus 156 ~~~~~~~~~--~~~~EgP~i~k-~~G~yyl~ys~~~~~~~~Y~~~ya~s~~~~GP~~~~ 211 (275)
T cd09004 156 ERDGSEITP--KNYFEGPFMFK-RNGIYYLMWSEGGWTDPDYHVAYAMADSPLGPFERP 211 (275)
T ss_pred cceeeeccC--CCceecceEEE-ECCEEEEEEECCCCCCCCceEEEEEcCCCCCCcccC
Confidence 4311 1111 12334 55665 4688777765432 12356667776654457764
No 68
>PTZ00334 trans-sialidase; Provisional
Probab=95.93 E-value=0.054 Score=53.68 Aligned_cols=83 Identities=13% Similarity=0.121 Sum_probs=51.2
Q ss_pred EeCCCcEEEEEEeccccCCceeEEEEecCCCCCCCCCccCCCCCCCCCCCccEEccCCeEEEeeecccCCCCcEEEEEEC
Q 020796 88 KLPSNGLLLFYKIGQEVQKWSGCMKRSYNKGVTWSEREQLPPGILGPSKNKPILLENGLLLCGSSVESWNSWGSWMEVTV 167 (321)
Q Consensus 88 ~~~~G~l~l~~~~~~~~~~~~~~~~~S~D~G~TWs~~~~l~~~~~g~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~S~ 167 (321)
.+.||+|..-.......+..-..|++|+|+|. |.-+.-+++. ++..+.++.+.+|+|++....+. + +-.++.|.
T Consensus 267 ~medGTLVFPv~a~~~~g~~vslIiYS~d~g~-W~ls~g~s~~--gC~~P~I~EWe~gkLlM~t~C~d--G-~RrVYES~ 340 (780)
T PTZ00334 267 QMKDGTLVFPVEGTKKDGKAVSLIIYSSATES-GNLSKGMSAD--GCSDPSVVEWKEGKLMMMTACDD--G-RRRVYESG 340 (780)
T ss_pred EecCCeEEEEEEEEcCCCCEEEEEEEecCCCC-eEEcCCCCCC--CCCCCEEEEEcCCeEEEEEEeCC--C-CEEEEEEC
Confidence 45688865332221111222235788999985 9654444332 45566677787899887644321 2 23699999
Q ss_pred CCCceeEEe
Q 020796 168 DAGRSWRKY 176 (321)
Q Consensus 168 D~G~tW~~~ 176 (321)
|.|.||++.
T Consensus 341 DmG~tWtEA 349 (780)
T PTZ00334 341 DKGDSWTEA 349 (780)
T ss_pred CCCCChhhC
Confidence 999999975
No 69
>cd08986 GH43_7 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-1,4-xylosidase (xylan 1,4-beta-xylosidase; EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanase and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially e
Probab=95.92 E-value=0.89 Score=39.79 Aligned_cols=166 Identities=13% Similarity=0.087 Sum_probs=85.5
Q ss_pred CccccceEEEecCCcEEEEEecCCCCCCCCcEEEEEEeCC--CCcCCcEEccCCCCCCCCCeEEEEeCCCcEEEEEEecc
Q 020796 25 KSCHASTIVEVDKGHFLVAYFGGSCEGAPDVKIWLQTFKD--GRWQSPIIADEEPNVPMWNPVLFKLPSNGLLLFYKIGQ 102 (321)
Q Consensus 25 ~~~~~p~l~~~~~g~l~~~~~~~~~~g~~~~~i~~s~s~~--GtWs~~~~~~~~~~~~~~~p~l~~~~~G~l~l~~~~~~ 102 (321)
....+|.|.... |+.++.|..... +.....+.+++++. |-|+.+... .+.....+|.++.+.+|+.||+|...
T Consensus 77 ~~~WAP~v~~~~-g~yyl~~s~~~~-~~~~~~i~va~a~~p~Gp~~~~~~~--~~~~~~iD~~~f~D~DG~~Yl~~~~~- 151 (269)
T cd08986 77 NAVWAPELHYIK-GRWYLVACMNNP-GYGGSSILLSTSGKIEGPYKHITGN--KPLFPGIDPSLFEDDDGKVYLVWHNT- 151 (269)
T ss_pred CCcCCceEEEEC-CEEEEEEEccCC-CCCceEEEEEeCCCCCCCcEeccCC--CCCCCccCCceEEcCCCCEEEEeeCC-
Confidence 456789998766 888877655422 22334577777764 678865322 12233467889999999999998642
Q ss_pred ccCCceeEEEEecCCCCCCC-CCccCCCCC-----CCCCCCccEEccCCeEEEeeeccc-----CCCCcEEEEEECCCCc
Q 020796 103 EVQKWSGCMKRSYNKGVTWS-EREQLPPGI-----LGPSKNKPILLENGLLLCGSSVES-----WNSWGSWMEVTVDAGR 171 (321)
Q Consensus 103 ~~~~~~~~~~~S~D~G~TWs-~~~~l~~~~-----~g~~~~~~~~~~~G~~~~~~~~~~-----~~~~~~~~~~S~D~G~ 171 (321)
.+.+.+++..+.. ++..+.... ....+++.+...+|..++...... .....+.+++|+.=--
T Consensus 152 -------~i~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~EgP~i~k~~G~YYL~yS~~~~~~~~~~~y~v~va~S~s~~G 224 (269)
T cd08986 152 -------LIARLKDDLSGLAGDPVRIDPSPTFYKDEIGHEGAFVFKYGGKYYLFGTAWSTDKGRKGSYDLYYAVADKITG 224 (269)
T ss_pred -------ceEeccCccccccCCcEEEecccccccCCccccccEEEEECCEEEEEEeecCCCCCCCCceEEEEEEcCCCCC
Confidence 1223233333332 222221110 011344445556777555422110 1133566777763111
Q ss_pred eeEEeeceecCCCCcceeeeeEEEcCCCeEEEEEee
Q 020796 172 SWRKYGPIYIPNESLSVIQPVPFHTANRTLRVLMRS 207 (321)
Q Consensus 172 tW~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~~~r~ 207 (321)
-|+... +...+.-+.+++..++|+.++++..
T Consensus 225 Py~~~~-----~~~~g~Gh~~~v~~~~G~~~~~~h~ 255 (269)
T cd08986 225 PYGARY-----FAGRFLGHNTPFQDLDGRWWCTAFF 255 (269)
T ss_pred CccccC-----ccccccCCCceEECCCCCEEEEEEc
Confidence 122211 0011112335777788887776644
No 70
>TIGR01322 scrB_fam sucrose-6-phosphate hydrolase.
Probab=95.76 E-value=0.65 Score=43.87 Aligned_cols=137 Identities=12% Similarity=0.134 Sum_probs=76.4
Q ss_pred EEEECCCCceeEEeeceecCCC---CcceeeeeEEEcCCCeEEEEEeecC----C--CCcEEEEEeccCCcCCCCCc-cC
Q 020796 163 MEVTVDAGRSWRKYGPIYIPNE---SLSVIQPVPFHTANRTLRVLMRSFN----G--IGRVCMSESCDGGLTWSYAK-PT 232 (321)
Q Consensus 163 ~~~S~D~G~tW~~~~~~~~~~~---~~~~~~~~~~~~~~G~l~~~~r~~~----~--~~~~~~~~S~D~G~tWs~~~-~~ 232 (321)
.+.|+ +..+|+....+..+.. ..|+.-++++. .+|++++++.... . .....+++|.|+ .+|++.. ++
T Consensus 59 ha~S~-Dlv~W~~~~~al~P~~~~d~~G~~sGsav~-~~g~~~l~YTg~~~~~~~~~~~~q~lA~S~Dg-~~~~k~~~pv 135 (445)
T TIGR01322 59 HYTSK-DLVHWEDEGVALAPDDPYDSHGCYSGSAVD-NNGQLTLMYTGNVRDSDWNRESYQCLATMDDD-GHFEKFGIVV 135 (445)
T ss_pred EEECC-CccccEECCccCcCCCcccCCceEECeEEe-eCCEEEEEEeccccCCCCCeeEEEEEEEcCCC-CeEEECCCce
Confidence 45565 5899998653322221 23555556554 5789999886531 1 123467889984 5898743 11
Q ss_pred CCCC-CC---C--c-eeEEEcCCCcEEEEEeCC---CCCeEEEEEEcCCCCCCCcceeecccC-------CCceeceEEE
Q 020796 233 QLLN-PN---S--G-IDGVKLKDGRLLLAYNTV---SRGVLKVALSKDDGDSWHDALTLEENL-------AMEFSYPAVI 295 (321)
Q Consensus 233 ~~~~-~~---~--~-~~~~~~~~g~~~lv~~~~---~r~~l~~~~S~D~G~tW~~~~~l~~~~-------~~~~~yp~~~ 295 (321)
++. +. . + +.+.. .+|+.+|++... ....+.++.| +|.++|+....+.... ....-.|.+.
T Consensus 136 -i~~~~~~~~~~fRDP~V~~-~~g~~~M~~g~~~~~~~g~i~ly~S-~Dl~~W~~~g~~~~~~~~~~~~~g~~~ECPdlf 212 (445)
T TIGR01322 136 -IELPPAGYTAHFRDPKVWK-HNGHWYMVIGAQTETEKGSILLYRS-KDLKNWTFVGEILGDGQNGLDDRGYMWECPDLF 212 (445)
T ss_pred -EeCCCCCCcCcCCCCcEEe-ECCEEEEEEEEecCCCceEEEEEEC-CCcccCeEecccccccccccCCccceEECCeEE
Confidence 111 11 0 1 22333 468888876432 2345556666 4689998776543211 1234568888
Q ss_pred EccCCeEEEEE
Q 020796 296 QASDGSVHITY 306 (321)
Q Consensus 296 ~~~dg~l~v~y 306 (321)
.+++. -+++|
T Consensus 213 ~l~~k-~vL~~ 222 (445)
T TIGR01322 213 SLDGQ-DVLLF 222 (445)
T ss_pred EECCc-EEEEE
Confidence 87654 33444
No 71
>COG3507 XynB Beta-xylosidase [Carbohydrate transport and metabolism]
Probab=95.38 E-value=0.37 Score=45.64 Aligned_cols=72 Identities=21% Similarity=0.330 Sum_probs=49.4
Q ss_pred CccccceEEEecCCcEEEEEecCCCCCCC--Cc-EEEEEEeC-CCCcCCcEEccCCCCCCCCCeEEEEeCCCcEEEEEEe
Q 020796 25 KSCHASTIVEVDKGHFLVAYFGGSCEGAP--DV-KIWLQTFK-DGRWQSPIIADEEPNVPMWNPVLFKLPSNGLLLFYKI 100 (321)
Q Consensus 25 ~~~~~p~l~~~~~g~l~~~~~~~~~~g~~--~~-~i~~s~s~-~GtWs~~~~~~~~~~~~~~~p~l~~~~~G~l~l~~~~ 100 (321)
.-+.+|.|. ..||+.|+.|..-...+.+ +. ..+++... +|+|++|..+... ..-+|.++.+.+|++||++..
T Consensus 89 ~giWAPdl~-y~dGkfwl~ytdvk~~~g~~k~~~nyl~t~~s~~G~WsDpi~l~~~---~~iDPslf~D~dGr~wlv~~~ 164 (549)
T COG3507 89 GGIWAPDLS-YHDGKFWLYYTDVKRSGGPYKNAGNYLVTAESIDGPWSDPIKLNGS---NAIDPSLFFDKDGRKWLVNGS 164 (549)
T ss_pred Cceecccee-cCCCcEEEEEecccccCCcccccccEEEEecCCCCCcccceecCCc---CccCCceeecCCCCEEEEecc
Confidence 556789998 7789999988332222211 22 23344433 6899999987543 235699999999999999874
No 72
>PF04041 DUF377: Domain of unknown function (DUF377); InterPro: IPR007184 Glycosidases or glycosyl hydrolases are a big and widespread family of enzymes that hydrolyse the glycosidic bonds between carbohydrates or between a carbohydrate and an aglycone moiety. On the basis of sequence and structural similarity, the glycoside hydrolase family belongs to the beta-fructosidase (furanosidase) superfamily of glycosyl hydrolases. This leads to the prediction that proteins of this family have a glycosidase (glycoside hydrolase) activity and, most probably, act on a furanoside residue (fructose, arabinose and ribose). Crystal structure from Thermotoga maritima a member of this family, determined to high-resolution by Structural Genomics initiatives, reveals a five-bladed beta-propeller fold with three acidic residues forming the active site.; PDB: 1VKD_A 3TAW_A 3QC2_B 3R67_B.
Probab=95.31 E-value=0.22 Score=44.57 Aligned_cols=136 Identities=15% Similarity=0.098 Sum_probs=75.9
Q ss_pred CccEEccCCe--EEEeeecccCC-C-CcEEEEEECCCCceeEEee-ceecCC---CCcceeeeeEEEcCCCeEEEEEeec
Q 020796 137 NKPILLENGL--LLCGSSVESWN-S-WGSWMEVTVDAGRSWRKYG-PIYIPN---ESLSVIQPVPFHTANRTLRVLMRSF 208 (321)
Q Consensus 137 ~~~~~~~~G~--~~~~~~~~~~~-~-~~~~~~~S~D~G~tW~~~~-~~~~~~---~~~~~~~~~~~~~~~G~l~~~~r~~ 208 (321)
|+.++..+|. +++..+.+... . ..+.+..|.|+ .+|+... ++..+. +..|+-.|.++..+ ++.+|.+...
T Consensus 34 Npgai~~~~~~R~~l~yr~~~~~~~~~~iglA~S~DG-i~f~~~~~pil~P~~~~e~~GvEDPRVt~i~-d~yymtYta~ 111 (312)
T PF04041_consen 34 NPGAIVFDGGLRVYLLYRAYGSDIGSSRIGLARSDDG-IHFERDPEPILYPDTDYEEWGVEDPRVTKID-DTYYMTYTAY 111 (312)
T ss_dssp EEEEEEETTE--EEEEEEEEESSSSEEEEEEEEESSS-SS-EE-SS-SBEE-SSTTHTEEEEEEEEEET-TEEEEEEEEE
T ss_pred cCcEEEECCeeEEEEEEEeECCCCceeEEEEEEccCC-cCceECCCCEEccCCCCcccCccceeEEEEC-CEEEEEEEEe
Confidence 3444445555 55443332211 2 25778899876 8898754 332222 23566668888775 6788877543
Q ss_pred C-CCCcEEEEEeccCCcCCCCCccCCCCCC-C---------CceeEEEcCCCcEEEEEeCCCCCeEEEEEEcCCCCCCCc
Q 020796 209 N-GIGRVCMSESCDGGLTWSYAKPTQLLNP-N---------SGIDGVKLKDGRLLLAYNTVSRGVLKVALSKDDGDSWHD 277 (321)
Q Consensus 209 ~-~~~~~~~~~S~D~G~tWs~~~~~~~~~~-~---------~~~~~~~~~~g~~~lv~~~~~r~~l~~~~S~D~G~tW~~ 277 (321)
. ....+.++.|+| ..+|........+.. . ...-.-..-+|+++|.++ ...+.++.| +|+..|..
T Consensus 112 ~~~~~~~~la~s~D-~~~~~r~g~~~~~~~~~~~~~~~~~kd~~lfp~ki~Gky~m~~r---~~~i~la~S-~Dl~~W~~ 186 (312)
T PF04041_consen 112 SGKGPRIGLATSKD-FKHWERHGKIFPPFNGNEDYRDFWSKDGALFPEKINGKYAMLHR---DPSIWLAYS-PDLIHWGN 186 (312)
T ss_dssp ESSSEEEEEEEESS-SSSEEEEECTTTTTCTS-EEEEEEEECCEEEESEETTEEEEEEE---SSSBEEEEE-SSSSSEEE
T ss_pred cCCCcccceEEccc-hHhhEEeccccCcccccccccccccCceEEEEEEECCEEEEEEC---CCCEEEEec-CCcccccc
Confidence 2 234677888887 788976432211111 0 000011123689888887 456788888 56889987
Q ss_pred ce
Q 020796 278 AL 279 (321)
Q Consensus 278 ~~ 279 (321)
..
T Consensus 187 ~~ 188 (312)
T PF04041_consen 187 HR 188 (312)
T ss_dssp EB
T ss_pred cc
Confidence 54
No 73
>cd08992 GH43_like_1 Glycosyl hydrolase family 43, uncharacterized proteins. This subfamily is glycosyl hydrolase family 43 (GH43)-like and contains uncharacterized proteins. GH43 proteins are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the GH43 enzymes display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller.
Probab=95.25 E-value=2.3 Score=38.67 Aligned_cols=196 Identities=15% Similarity=0.202 Sum_probs=99.4
Q ss_pred CcEEEEEEeCCC-CcCCcE-EccC-CC----CCCCCCeEEEEeCCCcEEEEEEecccc----CCceeEEEEecCCCCCCC
Q 020796 54 DVKIWLQTFKDG-RWQSPI-IADE-EP----NVPMWNPVLFKLPSNGLLLFYKIGQEV----QKWSGCMKRSYNKGVTWS 122 (321)
Q Consensus 54 ~~~i~~s~s~~G-tWs~~~-~~~~-~~----~~~~~~p~l~~~~~G~l~l~~~~~~~~----~~~~~~~~~S~D~G~TWs 122 (321)
...|.++.|+|| +|...- .+.. .+ ....+.|.++.. +|+.+|+|...... ......+.+|++.-.-|+
T Consensus 78 ~y~I~~A~S~Dgv~W~~~g~~L~~~~~g~Wd~~~vwaP~Vi~~-dGkyYM~Ysa~~~~~~~~~~~~IGvA~AdSp~GpWt 156 (349)
T cd08992 78 KCEIWHATSKDGWTWKEEGPAIGRGEKGAYDDRSVFTPEVLEH-EGTYYLVYQVVKSPYLNRSFESIAMAVADSPYGPWT 156 (349)
T ss_pred ceEEEEEECCCCCCceECCccccCCCCCCccccceECcEEEEE-CCEEEEEEEecccccCCCCcceEEEEEECCcccccc
Confidence 456889999999 997643 3332 11 135778988754 89999999742111 112345677765433476
Q ss_pred CCccCCCCCCCCCCCccEEccCCeEEEeeecccCCCCcEEEEEECCCCceeEEeeceecCCCCcceeeeeEEEcCCCeEE
Q 020796 123 EREQLPPGILGPSKNKPILLENGLLLCGSSVESWNSWGSWMEVTVDAGRSWRKYGPIYIPNESLSVIQPVPFHTANRTLR 202 (321)
Q Consensus 123 ~~~~l~~~~~g~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~S~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~G~l~ 202 (321)
.... ....+ ..+|.|.... ...+..+.++ .|... ....|.++.. +|+.+
T Consensus 157 r~d~---Pil~p-------~~dg~w~~d~--------~~~~~~~~~g--~wD~~----------~v~~P~v~~~-~g~yy 205 (349)
T cd08992 157 KSDE---PILSP-------SNDGIWKGDE--------DNRFLVKKKG--SFDSH----------KVHDPCLFPF-NGKFY 205 (349)
T ss_pred cCCC---cEecC-------CcCCceeecc--------CceeEeccCC--CcccC----------ceECCEEEEE-CCEEE
Confidence 4311 00000 0122222110 0112222211 23221 2234566655 68999
Q ss_pred EEEeecC---------CCCcEEEEEeccCCcCCCCCccCCCCCCCCceeEEEcCCCcEEEEEeCCCCCeEEEEEEcCCCC
Q 020796 203 VLMRSFN---------GIGRVCMSESCDGGLTWSYAKPTQLLNPNSGIDGVKLKDGRLLLAYNTVSRGVLKVALSKDDGD 273 (321)
Q Consensus 203 ~~~r~~~---------~~~~~~~~~S~D~G~tWs~~~~~~~~~~~~~~~~~~~~~g~~~lv~~~~~r~~l~~~~S~D~G~ 273 (321)
|++..+. ....+-+++|++----|+.....++-......++-...+|-..|+..+..... ++..|. ||.
T Consensus 206 L~Y~G~~~g~~~~~~~~~~~iGvAvAdsP~GPf~r~~~nPi~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~-dg~ 283 (349)
T cd08992 206 LYYKGEQMGEEMTMGGRETKWGVAIADDPEGPYVKSPYNPITNSGHETCVWQYKGGIAAMLTTDGPEKN-TIQFAP-DGI 283 (349)
T ss_pred EEEEccccCcccccCCCCceEEEEEECCCCCCCEeCCCCcccCCCCceEEEecCCceEEEEeccCCCCc-eEEeCC-CCc
Confidence 9886542 12357888888766667653221121222223444445554356655542222 466666 588
Q ss_pred CCCcceeecc
Q 020796 274 SWHDALTLEE 283 (321)
Q Consensus 274 tW~~~~~l~~ 283 (321)
.|.-..++..
T Consensus 284 ~~~~~~~~~~ 293 (349)
T cd08992 284 NFEIMAHIKG 293 (349)
T ss_pred cEEEeeeccC
Confidence 8976555543
No 74
>cd09003 GH43_AXH_1 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes that have been characterized with beta-xylosidase (EC 3.2.1.37), alpha-L-arabinofuranosidase (EC 3.2.1.55), xylanase (endo-alpha-L-arabinanase) as well as arabinoxylan arabinofuranohydrolase (AXH) activities. These are all inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. AXHs specifically hydrolyze the glycosidic bond between arabinofuranosyl substituents and xylopyranosyl backbone residues of arabinoxylan. Several of these enzymes also contain carbohydrate binding modules (CBMs) that bind cellulose
Probab=95.06 E-value=2.4 Score=37.93 Aligned_cols=143 Identities=13% Similarity=0.123 Sum_probs=75.8
Q ss_pred ccccceEEEec---CCcEEEEEecCCCCCCCCcEEEEEEeCC--CCcCCc--E-EccCC-CC----CCCCCeEEEEeCCC
Q 020796 26 SCHASTIVEVD---KGHFLVAYFGGSCEGAPDVKIWLQTFKD--GRWQSP--I-IADEE-PN----VPMWNPVLFKLPSN 92 (321)
Q Consensus 26 ~~~~p~l~~~~---~g~l~~~~~~~~~~g~~~~~i~~s~s~~--GtWs~~--~-~~~~~-~~----~~~~~p~l~~~~~G 92 (321)
...+|.|+... +|+.++.|..+ ...|.++++++ |.|+.+ . ++... ++ ....+|.++.+.||
T Consensus 77 ~~WAP~v~~~~~~~~gkyylyy~~~------~~~igva~SdsP~GP~~~~~g~~l~~~~~~~~~~~~~~iDp~~f~DdDG 150 (311)
T cd09003 77 NSWAPSIAVKKINGKGKFYLYFANG------GGGIGVLTADSPVGPWTDPLGKPLITGSTPGCAGVVWLFDPAVFVDDDG 150 (311)
T ss_pred ccCCCceEEeccCCCCEEEEEEecC------CCeEEEEEcCCCCCCcccCCCCeeecCCCCCccCCccccCCCeEECCCC
Confidence 45789998776 38888866432 12366666664 789875 2 22221 11 12358999999899
Q ss_pred cEEEEEEeccc----cCCceeEEEEecCCCCCCCC-CccCCCCCCCCCCCccEEccCCeEEEeeeccc-------CCCCc
Q 020796 93 GLLLFYKIGQE----VQKWSGCMKRSYNKGVTWSE-REQLPPGILGPSKNKPILLENGLLLCGSSVES-------WNSWG 160 (321)
Q Consensus 93 ~l~l~~~~~~~----~~~~~~~~~~S~D~G~TWs~-~~~l~~~~~g~~~~~~~~~~~G~~~~~~~~~~-------~~~~~ 160 (321)
+.||+|..... ......++.+-+++..+... +..+... ...+++.+...+|..++...... .....
T Consensus 151 ~~Yl~~g~~~~~~~~~~~~~i~i~~l~~D~~~~~g~~~~i~~~--~~~Egp~~~K~~G~YYL~ys~~~~~~~~~~~~~y~ 228 (311)
T cd09003 151 QGYLYFGGGVPGGRWANPNTARVIKLGDDMISVDGSAVTIDAP--YFFEASGLHKINGTYYYSYCTNFGGRDPGKPPPGR 228 (311)
T ss_pred CEEEEECCccCCCccccCCCEEEEEeCCCceeccCCceEccCC--CceEeeeEEEECCEEEEEEeCCCCccCCCCCCcee
Confidence 99999964211 01112445555555444432 2222221 12444455556787655432211 11234
Q ss_pred EEEEEECCCCceeEEe
Q 020796 161 SWMEVTVDAGRSWRKY 176 (321)
Q Consensus 161 ~~~~~S~D~G~tW~~~ 176 (321)
+.+++|+.----|+..
T Consensus 229 v~y~~s~~~~GP~~~~ 244 (311)
T cd09003 229 IAYMTSKNPMGPFTYK 244 (311)
T ss_pred EEEEEcCCCCCCcccC
Confidence 5566776432346543
No 75
>cd09001 GH43_XYL_2 Glycosyl hydrolase family 43, beta-D-xylosidase. This glycosyl hydrolase family 43 (GH43) includes mostly enzymes that have been characterized to have beta-1,4-xylosidase (beta-D-xylosidase;xylan 1,4-beta-xylosidase; EC 3.2.1.37) activity. They are part of an array of hemicellulases that are involved in the final breakdown of plant cell-wall whereby they degrade xylan. They hydrolyze beta-1,4 glycosidic bonds between two xylose units in short xylooligosaccharides. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extend
Probab=94.68 E-value=2.7 Score=36.70 Aligned_cols=210 Identities=10% Similarity=0.014 Sum_probs=105.0
Q ss_pred ccccceEEEecCCcEEEEEecCCCCCCCCcEEEEEEeCCC-CcCCcEEc-cC---C-----------CCCCCCCeEEEEe
Q 020796 26 SCHASTIVEVDKGHFLVAYFGGSCEGAPDVKIWLQTFKDG-RWQSPIIA-DE---E-----------PNVPMWNPVLFKL 89 (321)
Q Consensus 26 ~~~~p~l~~~~~g~l~~~~~~~~~~g~~~~~i~~s~s~~G-tWs~~~~~-~~---~-----------~~~~~~~p~l~~~ 89 (321)
..+.|+|+... |+.+++. .... ... .|.+.+|+|- +|+....+ .. . .....+.|.+...
T Consensus 10 ~~~DP~v~~~~-~~yY~~~-t~~~-~~~--gi~v~~S~Dl~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~WAP~v~~~ 84 (269)
T cd09001 10 DYPDPDVIRVG-DDYYMVS-TTMH-YSP--GAPILHSKDLVNWEIIGYVYDRLDDGDAYNLENGGNAYGKGQWAPSLRYH 84 (269)
T ss_pred CCCCCeEEEEC-CEEEEEE-CCcc-cCC--CCEEEEcccccCCeEcccccccccccccccccccCCCCCCCEECCceEEE
Confidence 44789998776 6766643 3211 112 2566678886 99865322 11 0 1124677888655
Q ss_pred CCCcEEEEEEeccccCCceeEEEEecCCCCCCCCCccCCCCCCCCCCCccEEccCCeEEEeeecccCCCCcEEEEEECCC
Q 020796 90 PSNGLLLFYKIGQEVQKWSGCMKRSYNKGVTWSEREQLPPGILGPSKNKPILLENGLLLCGSSVESWNSWGSWMEVTVDA 169 (321)
Q Consensus 90 ~~G~l~l~~~~~~~~~~~~~~~~~S~D~G~TWs~~~~l~~~~~g~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~S~D~ 169 (321)
+|+-+|+|... .....+..|++----|+.+..+. ..+-..+++..||+.++... ...+.+..-+.+
T Consensus 85 -~gkyy~yys~~----~~~~~v~~a~~p~Gpw~~~~~~~----~~iDp~~f~D~dG~~Yl~~~-----~~~i~~~~l~~d 150 (269)
T cd09001 85 -NGTFYVFFCTN----TGGTYIYTADDPEGPWTKTALDG----GYHDPSLLFDDDGTAYLVYG-----GGTIRLVELSPD 150 (269)
T ss_pred -CCEEEEEEEec----CCCeEEEEcCCCCCCCcCCCcCC----CcccCceEEcCCCCEEEEeC-----CCcEEEEEECcc
Confidence 89988888752 12345666665333476554332 11222344556788776521 123444443333
Q ss_pred CceeEEeeceecCCCC--cceee-eeEEEcCCCeEEEEEeecC-CCCcEEEEEeccCCcCCCCCccCCCC---CCCCc-e
Q 020796 170 GRSWRKYGPIYIPNES--LSVIQ-PVPFHTANRTLRVLMRSFN-GIGRVCMSESCDGGLTWSYAKPTQLL---NPNSG-I 241 (321)
Q Consensus 170 G~tW~~~~~~~~~~~~--~~~~~-~~~~~~~~G~l~~~~r~~~-~~~~~~~~~S~D~G~tWs~~~~~~~~---~~~~~-~ 241 (321)
..+............. ....| |.++. .+|..++++.... ....+.+++|++-=--|+....+..+ ....+ -
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~Egp~i~k-~~G~YYl~~S~~~~~~~~~~~~~s~~~~GP~~~~~~~~~~~~~~~~~gh~ 229 (269)
T cd09001 151 LTGVGGKDQVIIDAGEEIGLGAEGSHLYK-INGYYYIFNIAWGGGGRTQTCLRSKSLTGPYESKVVLEDGSTGGNGPHQG 229 (269)
T ss_pred cCCcCCCceEEEeCCCccccccccCeEEE-ECCEEEEEEecCCCCCceEEEEEeCCCCCCcCCcceecCCCCCCCCCCCE
Confidence 3333211111111110 12333 45554 5789888875542 22356677887643335442211100 00111 2
Q ss_pred eEEEcCCCcEEEEE
Q 020796 242 DGVKLKDGRLLLAY 255 (321)
Q Consensus 242 ~~~~~~~g~~~lv~ 255 (321)
.++..++|+.++++
T Consensus 230 ~~~~~~~G~~~~~~ 243 (269)
T cd09001 230 GIVDTPDGEWYFML 243 (269)
T ss_pred EEEECCCCCEEEEE
Confidence 35666788877775
No 76
>cd08986 GH43_7 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-1,4-xylosidase (xylan 1,4-beta-xylosidase; EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanase and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially e
Probab=94.37 E-value=3.3 Score=36.23 Aligned_cols=218 Identities=11% Similarity=-0.035 Sum_probs=105.1
Q ss_pred cccceEEEecCCcEEEEEecCCCC-----C-CCCcEEEEEEeCCC-CcCCcEEc-cCC---------------CCCCCCC
Q 020796 27 CHASTIVEVDKGHFLVAYFGGSCE-----G-APDVKIWLQTFKDG-RWQSPIIA-DEE---------------PNVPMWN 83 (321)
Q Consensus 27 ~~~p~l~~~~~g~l~~~~~~~~~~-----g-~~~~~i~~s~s~~G-tWs~~~~~-~~~---------------~~~~~~~ 83 (321)
.|.|.|+...+|..+++....... + .....|.+.+|+|- +|+....+ ... .....+.
T Consensus 2 ~rDP~v~~~~dg~Yy~~~T~~~~~~~~~~~~~~~~gi~i~~S~DLv~W~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~WA 81 (269)
T cd08986 2 IRDTYVTLGPDGYYYLTGTTPPPGLPFEDCSIVNDGIPLWRSKDLKKWESLGLIWDREKDATWQSYWIDEDDWYKNAVWA 81 (269)
T ss_pred CcCCeEEecCCCcEEEEEccCCccccccccccCCCceEEEeCccccCccccCcccccCCcccccccccccCCcccCCcCC
Confidence 367999988877766654332110 0 11124778888886 89875432 111 1234677
Q ss_pred eEEEEeCCCcEEEEEEeccccCC-ceeEEEEecCCCCCCCCCccCCCCCCCCCCCccEEccCCeEEEeeecccCCCCcEE
Q 020796 84 PVLFKLPSNGLLLFYKIGQEVQK-WSGCMKRSYNKGVTWSEREQLPPGILGPSKNKPILLENGLLLCGSSVESWNSWGSW 162 (321)
Q Consensus 84 p~l~~~~~G~l~l~~~~~~~~~~-~~~~~~~S~D~G~TWs~~~~l~~~~~g~~~~~~~~~~~G~~~~~~~~~~~~~~~~~ 162 (321)
|.+... +|+.+|+|........ ....+..|++=---|+.+....+ ....+-...++..||+.++.... . ..
T Consensus 82 P~v~~~-~g~yyl~~s~~~~~~~~~~i~va~a~~p~Gp~~~~~~~~~-~~~~iD~~~f~D~DG~~Yl~~~~----~--~i 153 (269)
T cd08986 82 PELHYI-KGRWYLVACMNNPGYGGSSILLSTSGKIEGPYKHITGNKP-LFPGIDPSLFEDDDGKVYLVWHN----T--LI 153 (269)
T ss_pred ceEEEE-CCEEEEEEEccCCCCCceEEEEEeCCCCCCCcEeccCCCC-CCCccCCceEEcCCCCEEEEeeC----C--ce
Confidence 888765 6999988875321111 12234444432234654432101 11112233445567887765211 1 11
Q ss_pred EEEECCCCceeEEee-ceecCC---CCcceee-eeEEEcCCCeEEEEEeec------CCCCcEEEEEeccCCcCCCCCcc
Q 020796 163 MEVTVDAGRSWRKYG-PIYIPN---ESLSVIQ-PVPFHTANRTLRVLMRSF------NGIGRVCMSESCDGGLTWSYAKP 231 (321)
Q Consensus 163 ~~~S~D~G~tW~~~~-~~~~~~---~~~~~~~-~~~~~~~~G~l~~~~r~~------~~~~~~~~~~S~D~G~tWs~~~~ 231 (321)
...+.| ..+..... .+.... ......| |.+.. .+|..++++... .....+.+++|+.=---|+....
T Consensus 154 ~~l~~d-~~~~~~~~~~~~~~~~~~~~~~~~EgP~i~k-~~G~YYL~yS~~~~~~~~~~~y~v~va~S~s~~GPy~~~~~ 231 (269)
T cd08986 154 ARLKDD-LSGLAGDPVRIDPSPTFYKDEIGHEGAFVFK-YGGKYYLFGTAWSTDKGRKGSYDLYYAVADKITGPYGARYF 231 (269)
T ss_pred EeccCc-cccccCCcEEEecccccccCCccccccEEEE-ECCEEEEEEeecCCCCCCCCceEEEEEEcCCCCCCccccCc
Confidence 222333 22322111 111110 0001233 45554 578988887442 11235677777643333433211
Q ss_pred CCCCCCCCceeEEEcCCCcEEEEEe
Q 020796 232 TQLLNPNSGIDGVKLKDGRLLLAYN 256 (321)
Q Consensus 232 ~~~~~~~~~~~~~~~~~g~~~lv~~ 256 (321)
...++. ...++...+|+.++++.
T Consensus 232 -~~~g~G-h~~~v~~~~G~~~~~~h 254 (269)
T cd08986 232 -AGRFLG-HNTPFQDLDGRWWCTAF 254 (269)
T ss_pred -cccccC-CCceEECCCCCEEEEEE
Confidence 122222 12456778899998875
No 77
>cd08989 GH43_XYL Glycosyl hydrolase family 43, beta-D-xylosidase. This glycosyl hydrolase family 43 (GH43) includes mostly enzymes that have been characterized to have beta-1,4-xylosidase (beta-D-xylosidase;xylan 1,4-beta-xylosidase; EC 3.2.1.37) activity. They are part of an array of hemicellulases that are involved in the final breakdown of plant cell-wall whereby they degrade xylan. They hydrolyze beta-1,4 glycosidic bonds between two xylose units in short xylooligosaccharides. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended
Probab=94.36 E-value=3.3 Score=36.22 Aligned_cols=170 Identities=14% Similarity=0.082 Sum_probs=85.9
Q ss_pred ccccceEEEecCCcEEEEEecCCCCCCCCcEEEEEEeCC--CCcCCcEEccCCCCCCCCCeEEEEeCCCcEEEEEEeccc
Q 020796 26 SCHASTIVEVDKGHFLVAYFGGSCEGAPDVKIWLQTFKD--GRWQSPIIADEEPNVPMWNPVLFKLPSNGLLLFYKIGQE 103 (321)
Q Consensus 26 ~~~~p~l~~~~~g~l~~~~~~~~~~g~~~~~i~~s~s~~--GtWs~~~~~~~~~~~~~~~p~l~~~~~G~l~l~~~~~~~ 103 (321)
...+|.|... +|+.++.|..... .....|.+.++++ |-|+.+.... ....+|.++.+.+|+.||+|...
T Consensus 67 ~~WAP~v~~~-~G~yy~yy~~~~~--~~~~~i~va~sd~~~Gpw~~~~~~~----~~~IDp~~f~D~dG~~Yl~~~~~-- 137 (269)
T cd08989 67 GIWAPCLSYY-DGKFWLIYTAVKV--WKDCHNYLFTAEDITGPWSRPIFLN----YGGFDPSLFHDDDGKKYLINMGW-- 137 (269)
T ss_pred cEEcceEEEE-CCEEEEEEecccc--CCCceEEEEEECCCCCCCcCCEECC----CCcccCceEEcCCCCEEEEecCC--
Confidence 4578999876 5888876654322 1223466666654 6898876442 13467989998999999998531
Q ss_pred cCCceeEEEE-ecCCCCCCCCCc--cCCCC-CCCCCCCccEEccCCeEEEeeeccc-CCCCcEEEEEECCCCceeEEee-
Q 020796 104 VQKWSGCMKR-SYNKGVTWSERE--QLPPG-ILGPSKNKPILLENGLLLCGSSVES-WNSWGSWMEVTVDAGRSWRKYG- 177 (321)
Q Consensus 104 ~~~~~~~~~~-S~D~G~TWs~~~--~l~~~-~~g~~~~~~~~~~~G~~~~~~~~~~-~~~~~~~~~~S~D~G~tW~~~~- 177 (321)
....+.. +.|.+.-=+++. .+..+ .....+++.+...+|.-++...... .......+.+|+.==--|+...
T Consensus 138 ---~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~Egp~~~k~~G~YYl~~S~~~~~~~~~~~~~rs~~~~GP~~~~~~ 214 (269)
T cd08989 138 ---SGIRLQEYSPAEKKLIGKPLNKVIIKGTDDGLTEGPHLYKINGKYYLTTAEGGTGYIHEETIARSDKIHGPYEGRPD 214 (269)
T ss_pred ---CcEEEEEEChhhCCCCCCceeEEEecCCCCCccccceEEEECCEEEEEEeeCCCCCCeeEEEEEECCCCCCCCcCCC
Confidence 1223333 233222112221 11111 0112344445555777555432211 1223456777773212365432
Q ss_pred -ceecC---C-CCcceeeeeEEEcCCCeEEEEEee
Q 020796 178 -PIYIP---N-ESLSVIQPVPFHTANRTLRVLMRS 207 (321)
Q Consensus 178 -~~~~~---~-~~~~~~~~~~~~~~~G~l~~~~r~ 207 (321)
++... + ...+.-+.++++.++|+.++++..
T Consensus 215 ~pl~~~~~~~~~~~g~GH~s~v~~~~G~~~~~~h~ 249 (269)
T cd08989 215 NPLVLWDTPGNPLQKCGHASLVETPDGKWYLAHLT 249 (269)
T ss_pred CcceeecCCCCCcccCCCcCeEECcCCCEEEEEEe
Confidence 21110 1 112333456677777886666543
No 78
>PF13810 DUF4185: Domain of unknown function (DUF4185)
Probab=94.34 E-value=3.7 Score=36.83 Aligned_cols=124 Identities=19% Similarity=0.282 Sum_probs=65.6
Q ss_pred cEEEEEECCCCceeEEeeceecCCC--Ccc------eeeeeEEEcCCCeEEEEEeecCCCCcEEEEEecc----------
Q 020796 160 GSWMEVTVDAGRSWRKYGPIYIPNE--SLS------VIQPVPFHTANRTLRVLMRSFNGIGRVCMSESCD---------- 221 (321)
Q Consensus 160 ~~~~~~S~D~G~tW~~~~~~~~~~~--~~~------~~~~~~~~~~~G~l~~~~r~~~~~~~~~~~~S~D---------- 221 (321)
...+.+|+|+|+||+......-.+. ..+ ..+.......+|-++++.....-.+.+++++-.-
T Consensus 128 ~S~i~~S~D~G~tW~~~~~~~~~~~~~~~g~~~~~~~fq~~a~~~~dgyVYv~gt~~~R~g~~~LaRV~~~~i~d~~aye 207 (316)
T PF13810_consen 128 YSGIAYSDDNGETWTVVPGTIRPNSPFHPGFNQGNWNFQMAAFVKDDGYVYVYGTPFGRNGGVYLARVPPDDILDRSAYE 207 (316)
T ss_pred ceEEEEeCCCCCCceeCCCcccccccccCCccccccccccccccCCCCEEEEEeCCCCCCCcEEEEEeCHHHCCChhhcc
Confidence 5779999999999998752211111 011 1122223346777888764322123444444211
Q ss_pred --CCcC--CCCCccC--C-CCCCCCceeEEEc-CCCcEEEEEeCCCCCeEEEEEEcCCCCCCCcceeecc
Q 020796 222 --GGLT--WSYAKPT--Q-LLNPNSGIDGVKL-KDGRLLLAYNTVSRGVLKVALSKDDGDSWHDALTLEE 283 (321)
Q Consensus 222 --~G~t--Ws~~~~~--~-~~~~~~~~~~~~~-~~g~~~lv~~~~~r~~l~~~~S~D~G~tW~~~~~l~~ 283 (321)
.|.. |....+- . ++.+.+.+++... ..|+.+|++.+..+..+.+..+.+=---|+.+..+..
T Consensus 208 yw~g~~~~W~~~~~~atpv~~~~vgElSv~~~~~~gk~Vl~~~~~~~~~I~~RtA~~P~GpWs~~~~l~~ 277 (316)
T PF13810_consen 208 YWDGSGGGWSWGNPPATPVLPGPVGELSVRYNEYLGKWVLSYFDAGTGGIVLRTAPSPTGPWSEPKPLVT 277 (316)
T ss_pred ccCCCCcccccCCCCccccccCCccceEEEEeCCCCEEEEEEecccCCcEEEEecCCCCCCCCCCeeEEe
Confidence 1233 7543221 1 2333344555543 3689999987655556666665432335987776554
No 79
>cd08997 GH68 Glycosyl hydrolase family 68, includes levansucrase, beta-fructofuranosidase and inulosucrase. Glycosyl hydrolase family 68 (GH68) consists of frucosyltransferases (FTFs) that include levansucrase (EC 2.4.1.10), beta-fructofuranosidase (EC 3.2.1.26) and inulosucrase (EC 2.4.1.9), all of which use sucrose as their preferential donor substrate. Levansucrase, also known as beta-D-fructofuranosyl transferase, catalyzes the transfer of the sucrose fructosyl moiety to a growing levan chain. Similarly, inulosucrase catalyzes long inulin-type of fructans, and beta-fructofuranosidases create fructooligosaccharides (FOS). However, in the absence of high fructan/sucrose ratio, some GH68 enzymes can also use fructan as donor substrate. GH68 retaining enzymes (i.e. they retain the configuration at anomeric carbon atom of the substrate) catalyze hydrolysis in two steps involving a covalent glycosyl enzyme intermediate: an aspartate located close to the N-terminus acts as the catalytic n
Probab=93.62 E-value=3.8 Score=37.28 Aligned_cols=86 Identities=13% Similarity=0.142 Sum_probs=53.3
Q ss_pred EEecCCCCCCCccccceEEEecCCcEEEEEecCCCC----CCCCcEEEEEEeCCC-----CcCCcEEc-cCC--------
Q 020796 15 FTFPANSAPFKSCHASTIVEVDKGHFLVAYFGGSCE----GAPDVKIWLQTFKDG-----RWQSPIIA-DEE-------- 76 (321)
Q Consensus 15 ~~f~~~~~~~~~~~~p~l~~~~~g~l~~~~~~~~~~----g~~~~~i~~s~s~~G-----tWs~~~~~-~~~-------- 76 (321)
.||+++..+-..+..++.+...+|++++.|.+.... ....+.|..+++++. .|.....+ .++
T Consensus 59 ~l~p~~~~d~~g~wSGsa~~~~dg~~~lfYTg~~~~~~~~~~~~Q~ia~a~~~~~~v~~~~~~~~~~lf~~Dg~~Yqt~~ 138 (349)
T cd08997 59 KVFPDGLSPGSREWSGSATLDDDGTVQLFYTAVGRKGEPQPTFTQRLALARGTLSVVNLSGFEDHHELFEPDGDLYQTDQ 138 (349)
T ss_pred ccCCCCcccCCCeEcceEEEeCCCeEEEEEeccccCCCCCCCceEEEEEEECCCcceEecccCccceeeeCCCceEEecc
Confidence 477766545556667787777779999988765321 123345666666653 34332222 111
Q ss_pred ---------CCCCCCCeEEEEeC-CCcEEEEEEe
Q 020796 77 ---------PNVPMWNPVLFKLP-SNGLLLFYKI 100 (321)
Q Consensus 77 ---------~~~~~~~p~l~~~~-~G~l~l~~~~ 100 (321)
.....++|.++.++ +|..||++..
T Consensus 139 q~~~~~~~~~~~~fRDP~vf~d~~~G~~ymvfea 172 (349)
T cd08997 139 QYEGTGAQGDIKAFRDPFVFEDPETGKTYLLFEG 172 (349)
T ss_pred ccccccccCccCcccCCEEEecCCCCcEEEEEEe
Confidence 12357789999887 7889988875
No 80
>cd08981 GH43_2 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-1,4-xylosidase (xylan 1,4-beta-xylosidase; EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanase and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially e
Probab=93.15 E-value=5.8 Score=35.12 Aligned_cols=223 Identities=11% Similarity=0.034 Sum_probs=109.8
Q ss_pred CCCeEEEEeC-CCcEEEEEEecccc---CCceeEEEEecCCCCCCCCCccCCC-CC--C--CCCCCccEEccCCeEEEee
Q 020796 81 MWNPVLFKLP-SNGLLLFYKIGQEV---QKWSGCMKRSYNKGVTWSEREQLPP-GI--L--GPSKNKPILLENGLLLCGS 151 (321)
Q Consensus 81 ~~~p~l~~~~-~G~l~l~~~~~~~~---~~~~~~~~~S~D~G~TWs~~~~l~~-~~--~--g~~~~~~~~~~~G~~~~~~ 151 (321)
..+|.++..+ +|+-+++.+..... ......+.+|+| -.+|+....+.+ .. . .....+-+...+|+.++..
T Consensus 6 ~~DP~v~~~~~~g~yYl~~T~~~~~~~~~~~gi~v~~S~D-Lv~W~~~g~~~~~~~~~~~~~~~WAP~v~~~~G~yyly~ 84 (291)
T cd08981 6 IRDPFILADPETGTYYLYGTTDPNIWGGEGTGFDVYKSKD-LKDWEGPYPVFRPPDDFWADDNFWAPEVHEYKGRYYMFA 84 (291)
T ss_pred ccCCEEEEECCCCEEEEEEecCccccccCCCcEEEEECCC-hhcccccceeeccCCCcCccccccCCeeeeeCCEEEEEE
Confidence 4678887764 67777765532111 001234667776 578987655332 11 0 1111222344588876643
Q ss_pred ecccCC--CCcEEEEEECCCCceeEEeeceecCCCCcceeeeeEEEcCCCeEEEEEeec---CCCCcEEEEEeccCCcCC
Q 020796 152 SVESWN--SWGSWMEVTVDAGRSWRKYGPIYIPNESLSVIQPVPFHTANRTLRVLMRSF---NGIGRVCMSESCDGGLTW 226 (321)
Q Consensus 152 ~~~~~~--~~~~~~~~S~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~~~r~~---~~~~~~~~~~S~D~G~tW 226 (321)
...... ...+.++.|++=---|+......+.+.....+.|.++..+||+.++++... ...+.+++++=.+.+.+-
T Consensus 85 s~~~~~~~~~~~~va~s~~p~GP~~~~~~~~~~~~~~~~iDp~~f~DdDG~~Yl~~~~~~~~~~~~~i~~~eL~~d~~~~ 164 (291)
T cd08981 85 TFHNPGGERRGTAILVSDSPEGPFVPHSDGPVTPEDWMCLDGTLYVDEDGKPWMVFCHEWVQVYDGTIEAVRLSPDLSRA 164 (291)
T ss_pred EeccCCCceeeEEEEECCCCCCCCEeCCCCccCCCCCceEcCceEEcCCCCEEEEEEecccccCCCCEEEEEeCCCcccc
Confidence 222111 123556666642224665421111222234677888888899998876421 112445554433333322
Q ss_pred C-CCccC-CC---C-------------C-CCCceeEEEcCCCcEEEEEeC--CCCCeEEEEEEcC---CCCCCCcce-ee
Q 020796 227 S-YAKPT-QL---L-------------N-PNSGIDGVKLKDGRLLLAYNT--VSRGVLKVALSKD---DGDSWHDAL-TL 281 (321)
Q Consensus 227 s-~~~~~-~~---~-------------~-~~~~~~~~~~~~g~~~lv~~~--~~r~~l~~~~S~D---~G~tW~~~~-~l 281 (321)
. ++..+ .. + . ...+..+...++|+.+|+|.. .....+.+++|.. -| -|.+.. .+
T Consensus 165 ~ge~~~i~~~~~~~w~~~~~~~~~~~~~~~~EgP~i~k~~~G~YYl~yS~~~~~~Y~~~~~rs~s~~~~G-Py~~~~~pi 243 (291)
T cd08981 165 IGEPVLLFRASEAPWVREFGLIGRGSGGYVTDGPFLYRTKSGRLLMLWSSFSDGGYAQGVARSESGTLLG-PWVQEPEPL 243 (291)
T ss_pred CCceEEEecCCcCCcccccccccccCCCeEeeCCEEEEeCCCcEEEEEEecCCCCEEEEEEEcCCCCccC-CcEECCCcc
Confidence 1 11110 00 0 0 001223344457898888742 2344566777763 12 265432 22
Q ss_pred cccCCCceeceEEEEccCCeEEEEEEe
Q 020796 282 EENLAMEFSYPAVIQASDGSVHITYTY 308 (321)
Q Consensus 282 ~~~~~~~~~yp~~~~~~dg~l~v~y~~ 308 (321)
-.. +.++..+++..+|..|++|-.
T Consensus 244 ~~~---~~GH~s~v~~~~G~~~~vyH~ 267 (291)
T cd08981 244 ISD---DGGHGMLFRTFDGRLMLSLHT 267 (291)
T ss_pred cCC---CCCCCeeEEcCCCCEEEEEEC
Confidence 211 235677888889988888754
No 81
>COG1621 SacC Beta-fructosidases (levanase/invertase) [Carbohydrate transport and metabolism]
Probab=92.96 E-value=8.6 Score=36.56 Aligned_cols=214 Identities=18% Similarity=0.158 Sum_probs=105.0
Q ss_pred CCcEEEEEEeccccCCcee---EEEEecCCCCCCCCCc-cCCCC----CCCCCCCccEEccCCeEEEe-eeccc-CCC--
Q 020796 91 SNGLLLFYKIGQEVQKWSG---CMKRSYNKGVTWSERE-QLPPG----ILGPSKNKPILLENGLLLCG-SSVES-WNS-- 158 (321)
Q Consensus 91 ~G~l~l~~~~~~~~~~~~~---~~~~S~D~G~TWs~~~-~l~~~----~~g~~~~~~~~~~~G~~~~~-~~~~~-~~~-- 158 (321)
+|+-++||+-.+....+.. .-..|+ +=.+|+... .|.|+ ..|+..+++++. +|++.+. ..... .+.
T Consensus 51 ~G~yHlFYQ~~P~~~~~g~~~WgHa~S~-Dlv~W~~~piaL~Pd~~~d~~g~ySGSAV~~-~~~l~lfytg~v~~~~~~r 128 (486)
T COG1621 51 DGKYHLFYQYNPFGAAHGPKHWGHAVSK-DLVHWEHLPIALAPDDDYDSHGCYSGSAVVD-DGNLSLFYTGNVRDSNGIR 128 (486)
T ss_pred CCEEEEEEecCCCCCCCCCceeeeeccC-CcccceECCceecCCCccccCCceeeeEEEe-CCcEEEEEccceeccCCcc
Confidence 7899999985332111111 134664 468897544 34442 345556666654 5554332 11111 111
Q ss_pred -CcEEEEEECCCCceeEE-eeceecCCC--CcceeeeeEEEcCCCeEEEEE--eecCCCCcEEEEEeccCCcCCCCCccC
Q 020796 159 -WGSWMEVTVDAGRSWRK-YGPIYIPNE--SLSVIQPVPFHTANRTLRVLM--RSFNGIGRVCMSESCDGGLTWSYAKPT 232 (321)
Q Consensus 159 -~~~~~~~S~D~G~tW~~-~~~~~~~~~--~~~~~~~~~~~~~~G~l~~~~--r~~~~~~~~~~~~S~D~G~tWs~~~~~ 232 (321)
..-.+++|+|+|...+. ..++...+. ...+..|.++...+|+..++. ......+.+.+..|.| .+.|+..-.+
T Consensus 129 ~~~Q~iA~s~dg~~f~K~~~~~i~~~p~~~t~hFRDPKv~w~~~~~~~~mlgAq~~~~~g~i~lY~S~D-L~~W~~~g~~ 207 (486)
T COG1621 129 QQTQCIAYSEDGGTFEKYSGNPIIDQPEGYTPHFRDPKVVWDEGGKWWMMLGAQGEDLKGTILLYESDD-LKNWQFTGEF 207 (486)
T ss_pred eeEEEEEEEcCCCceEeccCCceecCCCcccccCCCCcccccCCCcEEEEEEEecCCCCceEEEEeCCC-ccCcEEEEee
Confidence 13468899996665553 233322121 123456776666667654443 3333345677777766 9999976544
Q ss_pred CCCCCCCc-----eeEEEcCCCcEEEEEeCC---------CCCeEEEEEEcCCCCCCCcce----eecccCCCceeceEE
Q 020796 233 QLLNPNSG-----IDGVKLKDGRLLLAYNTV---------SRGVLKVALSKDDGDSWHDAL----TLEENLAMEFSYPAV 294 (321)
Q Consensus 233 ~~~~~~~~-----~~~~~~~~g~~~lv~~~~---------~r~~l~~~~S~D~G~tW~~~~----~l~~~~~~~~~yp~~ 294 (321)
.......+ +.+..++.....+.+-.. ......+.+-.=||+++.... .|+- +.++--|..
T Consensus 208 ~~~~~~~gym~ECPdlf~l~~~~~~~~~pqg~~~~~~~~~n~~~~~Y~vG~~dg~~f~~~~~~~~~LD~--G~DfYApQt 285 (486)
T COG1621 208 GLEQGGLGYMWECPDLFELDGEDVLLFWPQGLSINGGEYDNIYQSGYFVGDFDGKEFKLDDGQFRELDF--GFDFYAPQT 285 (486)
T ss_pred ccCCCceeeEEECCCeEEecCcCceEEcceeeecCCCcCCCcceeEEEEEeeccceeEecCCCceeccc--Cccccceee
Confidence 33211111 223444433333333211 122333444333566654332 2332 345544555
Q ss_pred EEccCCe-EEEEEEeC
Q 020796 295 IQASDGS-VHITYTYN 309 (321)
Q Consensus 295 ~~~~dg~-l~v~y~~~ 309 (321)
...+||+ |++.|..+
T Consensus 286 f~~~dgrri~igWmg~ 301 (486)
T COG1621 286 FLDPDGRRILIGWMGN 301 (486)
T ss_pred ccCCCCCEEEEEeccC
Confidence 5554664 77888653
No 82
>cd08982 GH43_3 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-1,4-xylosidase (xylan 1,4-beta-xylosidase; EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanase and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially e
Probab=92.75 E-value=6.8 Score=34.80 Aligned_cols=204 Identities=14% Similarity=0.056 Sum_probs=103.7
Q ss_pred CCeEEEEeCCCcEEEEEEeccccCCceeEEEEecCCCCCCCCCccCCCCCCCCCCCccEEccCCeEEEeeecccCCCCcE
Q 020796 82 WNPVLFKLPSNGLLLFYKIGQEVQKWSGCMKRSYNKGVTWSEREQLPPGILGPSKNKPILLENGLLLCGSSVESWNSWGS 161 (321)
Q Consensus 82 ~~p~l~~~~~G~l~l~~~~~~~~~~~~~~~~~S~D~G~TWs~~~~l~~~~~g~~~~~~~~~~~G~~~~~~~~~~~~~~~~ 161 (321)
.+|.++.. +|+.|++-+. .. .+.+|+| =..|+....+.. ..+...+ -+...+|++++.+... ..
T Consensus 4 ~DP~i~~~-~g~YY~~~T~---~~----~i~~S~D-L~~W~~~g~~~~-~~~~WAP-~i~~~~g~~Y~~~~~~-----~~ 67 (295)
T cd08982 4 ADPVVILF-KGEYYLFASM---SG----GYWHSSD-LIDWDFIPTNSL-PDEGYAP-AVFVYDGTLYYTASTY-----NS 67 (295)
T ss_pred CCCeEEEE-CCEEEEEEeC---CC----CeEECCC-cCCceECCcccC-CCCcCcC-EEEEECCEEEEEEeCC-----Cc
Confidence 46877765 6777765432 11 2678887 578987765322 1122332 3444588877654321 24
Q ss_pred EEEEECCC-CceeEEeeceecCCCCcceeeeeEEEcCCCeEEEEEeecCCCCcEEEE-EeccCCc---------------
Q 020796 162 WMEVTVDA-GRSWRKYGPIYIPNESLSVIQPVPFHTANRTLRVLMRSFNGIGRVCMS-ESCDGGL--------------- 224 (321)
Q Consensus 162 ~~~~S~D~-G~tW~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~~~r~~~~~~~~~~~-~S~D~G~--------------- 224 (321)
.++.|+|- |--|+...+ ......+.+.++..+||+.++++.... ...++++ .+.|.++
T Consensus 68 ~v~~s~~p~gp~w~~~~~----~~~~~~IDp~vf~DdDGk~Yl~~g~~~-~~~i~~~eL~~d~~~~~g~~~~l~~~~~~~ 142 (295)
T cd08982 68 RIYKTADPLSGPWEEVDK----SFPPGLADPALFIDDDGRLYLYYGCSN-NYPLRGVEVDPDTFRPIGEPVELIPGNPDK 142 (295)
T ss_pred eEEEeCCCCCCCcccccc----ccCCCccCCceEECCCCCEEEEEecCC-CCCeEEEEECcccCCccCcceEEEeCCCCC
Confidence 56777763 445776421 112245678888888899999875322 1224332 2333321
Q ss_pred -CCCCCccCC----CCCCCCceeEEEcCCCcEEEEEeCC----CCCeEEEEEEcCCCCCCCcce---eecccCC--Ccee
Q 020796 225 -TWSYAKPTQ----LLNPNSGIDGVKLKDGRLLLAYNTV----SRGVLKVALSKDDGDSWHDAL---TLEENLA--MEFS 290 (321)
Q Consensus 225 -tWs~~~~~~----~~~~~~~~~~~~~~~g~~~lv~~~~----~r~~l~~~~S~D~G~tW~~~~---~l~~~~~--~~~~ 290 (321)
.|...-... ......+..+.. .+|+.+|.|... ....+.+++|++=-.-|.... ++.+... .+.+
T Consensus 143 ~~We~~g~~~~~~~~~~~~EGP~i~k-~~G~YYL~yS~~~~~~~~Y~v~~a~s~~p~GP~~~~~~~pil~~~~~~~~g~G 221 (295)
T cd08982 143 HGWERFGENNDNPDKTPWMEGAWMTK-HNGKYYLQYAAPGTEFNTYADGVYVSDSPLGPFTYQPHNPFSYKPGGFITGAG 221 (295)
T ss_pred cCeEecCcccccccCCccccccEEEE-ECCEEEEEEeCCCcccCcEeEEEEEeCCCCCCCCcCCCCccccCCCCeEecCC
Confidence 122110000 000011233343 689999998532 223466777763222243221 2222111 1245
Q ss_pred ceEEEEccCCeEEEEEE
Q 020796 291 YPAVIQASDGSVHITYT 307 (321)
Q Consensus 291 yp~~~~~~dg~l~v~y~ 307 (321)
+..++...+|..|++|.
T Consensus 222 H~s~v~~~~G~~~~~yh 238 (295)
T cd08982 222 HGSTFQDKYGNYWHVGT 238 (295)
T ss_pred cccEEECCCCCEEEEEE
Confidence 66788878888887763
No 83
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=92.51 E-value=6.4 Score=33.93 Aligned_cols=163 Identities=11% Similarity=0.083 Sum_probs=66.9
Q ss_pred cCCeEEEeeec---ccCCCCcEEEEEECCCCceeEEeece---ecCCCCcceeeeeEEEcCCCeEEEEEeecC-CCCcEE
Q 020796 143 ENGLLLCGSSV---ESWNSWGSWMEVTVDAGRSWRKYGPI---YIPNESLSVIQPVPFHTANRTLRVLMRSFN-GIGRVC 215 (321)
Q Consensus 143 ~~G~~~~~~~~---~~~~~~~~~~~~S~D~G~tW~~~~~~---~~~~~~~~~~~~~~~~~~~G~l~~~~r~~~-~~~~~~ 215 (321)
-++-|+.|... .+.+..++...+|-|+|+||+.+.=+ ..+....+..-.++-... .||+++...+. ....+.
T Consensus 24 y~~VIYAPfM~~~RHGv~~LhvaWVkSgDdG~TWttPEwLtd~H~~yptvnyHCmSMGv~~-NRLfa~iEtR~~a~~km~ 102 (367)
T PF12217_consen 24 YDNVIYAPFMAGDRHGVDNLHVAWVKSGDDGQTWTTPEWLTDLHPDYPTVNYHCMSMGVVG-NRLFAVIETRTVASNKMV 102 (367)
T ss_dssp ETTEEEEEEEEESSSSSTT-EEEEEEESSTTSS----EESS---TTTTTEEEE-B-EEEET-TEEEEEEEEEETTT--EE
T ss_pred ecCeeecccccccccCccceEEEEEEecCCCCcccCchhhhhcCCCCCccceeeeeeeeec-ceeeEEEeehhhhhhhhh
Confidence 47777766432 22344578889999999999987621 112222232223443334 48888875442 112222
Q ss_pred EEEeccC----CcCCCCCccCCCCCC-CCc------eeEEEcCCCcEEEEEeCC--CCCeEEEEEEcC---CCCCCCcce
Q 020796 216 MSESCDG----GLTWSYAKPTQLLNP-NSG------IDGVKLKDGRLLLAYNTV--SRGVLKVALSKD---DGDSWHDAL 279 (321)
Q Consensus 216 ~~~S~D~----G~tWs~~~~~~~~~~-~~~------~~~~~~~~g~~~lv~~~~--~r~~l~~~~S~D---~G~tW~~~~ 279 (321)
.+.--|. -..|.......++.. .+. .......+....+=|... .-..+.+.+..| .+..+....
T Consensus 103 ~~~Lw~RpMF~~spW~~teL~~~~~~~~a~~~vTe~HSFa~i~~~~fA~GyHnGD~sPRe~G~~yfs~~~~sp~~~vrr~ 182 (367)
T PF12217_consen 103 RAELWSRPMFHDSPWRITELGTIASFTSAGVAVTELHSFATIDDNQFAVGYHNGDVSPRELGFLYFSDAFASPGVFVRRI 182 (367)
T ss_dssp EEEEEEEE-STTS--EEEEEES-TT--------SEEEEEEE-SSS-EEEEEEE-SSSS-EEEEEEETTTTT-TT--EEEE
T ss_pred hhhhhcccccccCCceeeecccccccccccceeeeeeeeeEecCCceeEEeccCCCCcceeeEEEecccccCCcceeeee
Confidence 1111111 122322111112220 111 123444566665555432 223455555443 233333332
Q ss_pred eecccCCCceeceEEEEccCCeEEEEEEe
Q 020796 280 TLEENLAMEFSYPAVIQASDGSVHITYTY 308 (321)
Q Consensus 280 ~l~~~~~~~~~yp~~~~~~dg~l~v~y~~ 308 (321)
+ .+.....++-|.+-.. +|.|++.-+.
T Consensus 183 i-~sey~~~AsEPCvkyY-~g~LyLtTRg 209 (367)
T PF12217_consen 183 I-PSEYERNASEPCVKYY-DGVLYLTTRG 209 (367)
T ss_dssp ---GGG-TTEEEEEEEEE-TTEEEEEEEE
T ss_pred c-hhhhccccccchhhhh-CCEEEEEEcC
Confidence 2 2223345778888774 6788777544
No 84
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=92.02 E-value=11 Score=35.41 Aligned_cols=38 Identities=16% Similarity=0.393 Sum_probs=26.1
Q ss_pred EEccCCeEEEeee-------cccCCCCcEEEEEECCCCceeEEee
Q 020796 140 ILLENGLLLCGSS-------VESWNSWGSWMEVTVDAGRSWRKYG 177 (321)
Q Consensus 140 ~~~~~G~~~~~~~-------~~~~~~~~~~~~~S~D~G~tW~~~~ 177 (321)
++..||++++.-. .+-..+-+..+.+|.|+|+++++..
T Consensus 178 iv~~dg~ivigRntydLP~WK~YkGGtrGklWis~d~g~tFeK~v 222 (668)
T COG4946 178 IVIKDGIIVIGRNTYDLPHWKGYKGGTRGKLWISSDGGKTFEKFV 222 (668)
T ss_pred EEEeCCEEEEccCcccCcccccccCCccceEEEEecCCcceeeee
Confidence 4667888776421 1111345778999999999999874
No 85
>cd08980 GH43_1 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-xylosidase (EC 3.2.1.37) and alpha-L-arabinofuranosidase (EC 3.2.1.55) and possibly bifunctional xylosidase/arabinofuranosidase activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller.
Probab=91.80 E-value=8.6 Score=33.84 Aligned_cols=216 Identities=14% Similarity=0.156 Sum_probs=108.2
Q ss_pred CeEEEEeCCCcEEEEEEeccccCCceeEEEEecCCCCCCCCCccC---CCCC----CCCCCCccEEccCCeEEEeeeccc
Q 020796 83 NPVLFKLPSNGLLLFYKIGQEVQKWSGCMKRSYNKGVTWSEREQL---PPGI----LGPSKNKPILLENGLLLCGSSVES 155 (321)
Q Consensus 83 ~p~l~~~~~G~l~l~~~~~~~~~~~~~~~~~S~D~G~TWs~~~~l---~~~~----~g~~~~~~~~~~~G~~~~~~~~~~ 155 (321)
+|.++... ++-+++.+... ....+.+|+| =.+|+..... .+.. .+....+-+...+|+.++......
T Consensus 2 DP~v~~~~-d~yY~~~T~~~----~~~~i~~S~d-l~~w~~~~~~~~~~~~~~~~~~~~~WAP~i~~~~g~yylyys~~~ 75 (288)
T cd08980 2 DPWVIRHD-GYYYFTATTGE----DRIELRRSDT-LAGLATAESKVVWTPPDSGPYSGNLWAPELHYIDGKWYIYFAAGD 75 (288)
T ss_pred CCeEEEEC-CEEEEEEEeCC----CcEEEEecCC-hhHhhcCCcEEEecCCCCCCccccEECceEEEECCEEEEEEEccC
Confidence 57787764 46666655321 2345777776 4677654321 1110 011112223445788765432221
Q ss_pred C---CCCcEEEEEECC---CCceeEEeeceecCCCCcceeeeeEEEcCCCeEEEEEeecC----CCCcEEEEEeccCCcC
Q 020796 156 W---NSWGSWMEVTVD---AGRSWRKYGPIYIPNESLSVIQPVPFHTANRTLRVLMRSFN----GIGRVCMSESCDGGLT 225 (321)
Q Consensus 156 ~---~~~~~~~~~S~D---~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~~~r~~~----~~~~~~~~~S~D~G~t 225 (321)
. ....+.++.|++ ---.|+....+.... ....+.|.++.. +|+.++++.... ....+++++..+. .+
T Consensus 76 ~~~~~~~~~~v~~a~~~~~~~Gpw~~~~~~~~~~-~~~~iDp~~~~d-dG~~Yl~~~~~~~~~~~~~~i~~~~l~~~-~~ 152 (288)
T cd08980 76 GGGNANHRMYVLENAGADPPTGPWTFKGRLADPT-DRWAIDGTVFEH-NGQLYFVWSGWEGRTNGNQNLYIAKMSNP-WT 152 (288)
T ss_pred CCCCcceeEEEEEeCCCCCCCCCceEeeEeccCC-CCeeeeeEEEEE-CCEEEEEEEccCCCCCCCccEEEEECCCC-Cc
Confidence 1 123456666664 234699875443222 224567788776 599888774321 1235666665543 34
Q ss_pred CCC-CccCCCCC---------CCCceeEEEcCCCcEEEEEeCC----CCCeEEEEEEcCC-C----CCCCcce--eeccc
Q 020796 226 WSY-AKPTQLLN---------PNSGIDGVKLKDGRLLLAYNTV----SRGVLKVALSKDD-G----DSWHDAL--TLEEN 284 (321)
Q Consensus 226 Ws~-~~~~~~~~---------~~~~~~~~~~~~g~~~lv~~~~----~r~~l~~~~S~D~-G----~tW~~~~--~l~~~ 284 (321)
+.. +..+..+. ...+..+++ .+|.++|.|... ....+.++++... + .+|.+.. ++...
T Consensus 153 ~~g~~~~i~~p~~~we~~~~~~~EgP~~~k-~~G~yYl~yS~~~~~~~~Y~v~~a~~~~~~~~~~~~~~~~~~~pil~~~ 231 (288)
T cd08980 153 LTGPRVLISRPEYDWERQGPGVNEGPAALK-RNGKVFLTYSASGSWTPDYCLGLLTADGGADLLDPASWTKSPTPVFQSS 231 (288)
T ss_pred cCCcceEecCCCCCceecCceeeECcEEEE-ECCEEEEEEECCCCCCCCCEEEEEEEcCCCCCCChhhCcCCCCCceecC
Confidence 431 11111110 011233444 359999988532 2335566666421 1 2475421 22221
Q ss_pred ---CCCceeceEEEEccCCe-EEEEEEe
Q 020796 285 ---LAMEFSYPAVIQASDGS-VHITYTY 308 (321)
Q Consensus 285 ---~~~~~~yp~~~~~~dg~-l~v~y~~ 308 (321)
...+.++..++...+|. .+++|..
T Consensus 232 ~~~~~~g~GH~~iv~~~~G~~~~~~yH~ 259 (288)
T cd08980 232 PENGVYGPGHNSFTKSPDGTEDWIVYHA 259 (288)
T ss_pred CCCccCcCCccceEECCCCCEEEEEEcc
Confidence 11245788888878887 8888854
No 86
>cd09002 GH43_XYL_3 Glycosyl hydrolase family 43, beta-D-xylosidase. This glycosyl hydrolase family 43 (GH43) includes enzymes that have been characterized to have beta-1,4-xylosidase (beta-D-xylosidase;xylan 1,4-beta-xylosidase; EC 3.2.1.37) activity. They are part of an array of hemicellulases that are involved in the final breakdown of plant cell-wall whereby they degrade xylan. They hydrolyze beta-1,4 glycosidic bonds between two xylose units in short xylooligosaccharides. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended subs
Probab=91.27 E-value=9.8 Score=33.46 Aligned_cols=224 Identities=13% Similarity=0.103 Sum_probs=108.8
Q ss_pred CCcCCcEEccCCCCCCCCCeEEEEeCCCcEEEEEEeccccCCceeEEEEecCCCCCCCCCccCCCCCC-CCCCCccEEcc
Q 020796 65 GRWQSPIIADEEPNVPMWNPVLFKLPSNGLLLFYKIGQEVQKWSGCMKRSYNKGVTWSEREQLPPGIL-GPSKNKPILLE 143 (321)
Q Consensus 65 GtWs~~~~~~~~~~~~~~~p~l~~~~~G~l~l~~~~~~~~~~~~~~~~~S~D~G~TWs~~~~l~~~~~-g~~~~~~~~~~ 143 (321)
||...|.+-. ...+|.++.. +|+-+++.+. .. ......+.+|+| -.+|+....+.+... +...+ -+.-.
T Consensus 4 ~~~~nPv~~~-----~~~DP~i~~~-~~~yY~~~t~-~~-~~~gi~i~~S~D-L~~W~~~g~~~~~~~~~~WAP-~i~~~ 73 (280)
T cd09002 4 GTYRNPILAG-----DYPDPSILRD-GEDYYMTHSS-FK-YTPGLVIWHSRD-LVNWTPVGPALPEYEGDVWAP-DLCKY 73 (280)
T ss_pred ccEeCCccCC-----CCCCCEEEEE-CCEEEEEEcc-hh-cCCCEEEEECCC-cCCceEccccccCCCCCEEcC-eeEEE
Confidence 4566665321 2347888765 5666664431 11 111234566665 678987654332211 22222 23446
Q ss_pred CCeEEEeeecccC-CCCcEEEEEECCCCceeEEeeceecCCCCcceeeeeEEEcCCCeEEEEEeecCCCCcEEEEEeccC
Q 020796 144 NGLLLCGSSVESW-NSWGSWMEVTVDAGRSWRKYGPIYIPNESLSVIQPVPFHTANRTLRVLMRSFNGIGRVCMSESCDG 222 (321)
Q Consensus 144 ~G~~~~~~~~~~~-~~~~~~~~~S~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~~~r~~~~~~~~~~~~S~D~ 222 (321)
+|+.++....... ....+.++.|++---.|+.+. ... ..+++.|.++...||+.++++... . .+..+.|+
T Consensus 74 ~gkyy~yys~~~~~~~~~~~va~ad~p~Gpw~~~~--~~~--~~~~IDp~vf~DddG~~Yl~~~~~----~-~~~l~~d~ 144 (280)
T cd09002 74 DGRYYIYFPAIPEGGNWTNMVIWADSPEGPWSKPI--DLK--IGGCIDPGHVVDEDGNRYLFLSGG----D-RVRLTADG 144 (280)
T ss_pred CCEEEEEEEeecCCCCceEEEEEECCCCCCCcCCE--ecC--CCCccCCceEEcCCCCEEEEECCe----e-EEEECccc
Confidence 8886554332211 123466777765444587542 111 123577888888899999987321 1 11223332
Q ss_pred CcCCCCCccCCC----------CC-CCCceeEEEcCCCcEEEEEeCC--C----CCeEEEEEEcCCCCCCCcce---eec
Q 020796 223 GLTWSYAKPTQL----------LN-PNSGIDGVKLKDGRLLLAYNTV--S----RGVLKVALSKDDGDSWHDAL---TLE 282 (321)
Q Consensus 223 G~tWs~~~~~~~----------~~-~~~~~~~~~~~~g~~~lv~~~~--~----r~~l~~~~S~D~G~tW~~~~---~l~ 282 (321)
...-.++..+.. .. ...+..+.. .+|..+|.+... . ...+.++.|++=--.|.... ++.
T Consensus 145 ~~~~g~~~~~~~~~~~~~~~~~~~~~~Egp~~~k-~~g~YYl~yS~g~~~~~~~~~~v~~ars~s~~GP~~~~~~~pi~~ 223 (280)
T cd09002 145 LSTDGKLEHVYDGWRYPEDWVVEGFALEGPKLKK-RNGYYYLTTAVGGTAGPPTGHMVVAARSKSVHGPWENSPYNPLVR 223 (280)
T ss_pred cEecCcCEEEecCcccccccccCCcccccceEEE-ECCEEEEEEccCCCCCCCCCEEEEEEECCCCCCCCccCCCCcEEe
Confidence 111111111000 00 112233444 578888888532 1 12345566653212476532 232
Q ss_pred ccCC----CceeceEEEEccCCeEEEEEEe
Q 020796 283 ENLA----MEFSYPAVIQASDGSVHITYTY 308 (321)
Q Consensus 283 ~~~~----~~~~yp~~~~~~dg~l~v~y~~ 308 (321)
.... .+.++..++..++|.-+++|-.
T Consensus 224 ~~~~~~~~~g~GH~~i~~~~~g~~~~vyH~ 253 (280)
T cd09002 224 TQSPQEPWWSKGHATLVDGPDGQWWMVYHA 253 (280)
T ss_pred cCCCCCCceeCCCCcEEECCCCCEEEEEEe
Confidence 2111 1346778888778887878753
No 87
>cd09002 GH43_XYL_3 Glycosyl hydrolase family 43, beta-D-xylosidase. This glycosyl hydrolase family 43 (GH43) includes enzymes that have been characterized to have beta-1,4-xylosidase (beta-D-xylosidase;xylan 1,4-beta-xylosidase; EC 3.2.1.37) activity. They are part of an array of hemicellulases that are involved in the final breakdown of plant cell-wall whereby they degrade xylan. They hydrolyze beta-1,4 glycosidic bonds between two xylose units in short xylooligosaccharides. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended subs
Probab=90.26 E-value=12 Score=32.86 Aligned_cols=116 Identities=15% Similarity=0.142 Sum_probs=67.2
Q ss_pred cccceEEEecCCcEEEEEecCCCCCCCCcEEEEEEeCCC-CcCCcEEccCCCCCCCCCeEEEEeCCCcEEEEEEeccccC
Q 020796 27 CHASTIVEVDKGHFLVAYFGGSCEGAPDVKIWLQTFKDG-RWQSPIIADEEPNVPMWNPVLFKLPSNGLLLFYKIGQEVQ 105 (321)
Q Consensus 27 ~~~p~l~~~~~g~l~~~~~~~~~~g~~~~~i~~s~s~~G-tWs~~~~~~~~~~~~~~~p~l~~~~~G~l~l~~~~~~~~~ 105 (321)
...|+|+... ++.+++. .... ....|.+.+|+|- +|+....+.+......+.|.+.. .+|+-+|+|......+
T Consensus 15 ~~DP~i~~~~-~~yY~~~-t~~~---~~~gi~i~~S~DL~~W~~~g~~~~~~~~~~WAP~i~~-~~gkyy~yys~~~~~~ 88 (280)
T cd09002 15 YPDPSILRDG-EDYYMTH-SSFK---YTPGLVIWHSRDLVNWTPVGPALPEYEGDVWAPDLCK-YDGRYYIYFPAIPEGG 88 (280)
T ss_pred CCCCEEEEEC-CEEEEEE-cchh---cCCCEEEEECCCcCCceEccccccCCCCCEEcCeeEE-ECCEEEEEEEeecCCC
Confidence 4579998765 5666542 2111 1123677888886 99976543332233567788765 5899998888632222
Q ss_pred CceeEEEEecCCCCCCCCCccCCCCCCCCCCCccEEccCCeEEEe
Q 020796 106 KWSGCMKRSYNKGVTWSEREQLPPGILGPSKNKPILLENGLLLCG 150 (321)
Q Consensus 106 ~~~~~~~~S~D~G~TWs~~~~l~~~~~g~~~~~~~~~~~G~~~~~ 150 (321)
.....+..|++---.|+.+..+.. .+.+-..+++..||+.++.
T Consensus 89 ~~~~~va~ad~p~Gpw~~~~~~~~--~~~IDp~vf~DddG~~Yl~ 131 (280)
T cd09002 89 NWTNMVIWADSPEGPWSKPIDLKI--GGCIDPGHVVDEDGNRYLF 131 (280)
T ss_pred CceEEEEEECCCCCCCcCCEecCC--CCccCCceEEcCCCCEEEE
Confidence 334456677655456887653321 1113233445567887764
No 88
>cd08989 GH43_XYL Glycosyl hydrolase family 43, beta-D-xylosidase. This glycosyl hydrolase family 43 (GH43) includes mostly enzymes that have been characterized to have beta-1,4-xylosidase (beta-D-xylosidase;xylan 1,4-beta-xylosidase; EC 3.2.1.37) activity. They are part of an array of hemicellulases that are involved in the final breakdown of plant cell-wall whereby they degrade xylan. They hydrolyze beta-1,4 glycosidic bonds between two xylose units in short xylooligosaccharides. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended
Probab=89.04 E-value=15 Score=32.09 Aligned_cols=216 Identities=14% Similarity=0.096 Sum_probs=105.1
Q ss_pred ccccceEEEecCCcEEEEEecCCCCCCCCcEEEEEEeCCC-CcCCcEEc-cC--------C-CCCCCCCeEEEEeCCCcE
Q 020796 26 SCHASTIVEVDKGHFLVAYFGGSCEGAPDVKIWLQTFKDG-RWQSPIIA-DE--------E-PNVPMWNPVLFKLPSNGL 94 (321)
Q Consensus 26 ~~~~p~l~~~~~g~l~~~~~~~~~~g~~~~~i~~s~s~~G-tWs~~~~~-~~--------~-~~~~~~~p~l~~~~~G~l 94 (321)
..+.|+|+... ++.+++... .+..+ .+.+.+|+|- +|+....+ .. . .....+.|.+... +|+-
T Consensus 7 ~~~DP~ii~~~-~~yY~~~t~--~~~~~--g~~~~~S~DL~~W~~~g~~~~~~~~~~~~~~~~~~~~WAP~v~~~-~G~y 80 (269)
T cd08989 7 DNPDPSIIRAG-DDYYMASST--FEWFP--GVQIHHSTDLVNWHLIGHPLDRLEDLDMKGNPYSGGIWAPCLSYY-DGKF 80 (269)
T ss_pred CCCCCcEEEEC-CeEEEEECc--cccCC--CcEEEECCccCCCEEccccccCccccccccCCCCCcEEcceEEEE-CCEE
Confidence 45679999875 667765422 11112 2567788886 99864322 11 0 1234678988664 8999
Q ss_pred EEEEEeccccCCceeEEEEecCCCCCCCCCccCCCCCCCCCCCccEEccCCeEEEeeecccCCCCcEEEEE-ECCCCcee
Q 020796 95 LLFYKIGQEVQKWSGCMKRSYNKGVTWSEREQLPPGILGPSKNKPILLENGLLLCGSSVESWNSWGSWMEV-TVDAGRSW 173 (321)
Q Consensus 95 ~l~~~~~~~~~~~~~~~~~S~D~G~TWs~~~~l~~~~~g~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~-S~D~G~tW 173 (321)
+|+|..........+.+..|++----|+.+..+.. ..+-+..++..||+.++.... + ..+.+.. +.|.+.-=
T Consensus 81 y~yy~~~~~~~~~~i~va~sd~~~Gpw~~~~~~~~---~~IDp~~f~D~dG~~Yl~~~~--~--~~i~l~~l~~~~~~~~ 153 (269)
T cd08989 81 WLIYTAVKVWKDCHNYLFTAEDITGPWSRPIFLNY---GGFDPSLFHDDDGKKYLINMG--W--SGIRLQEYSPAEKKLI 153 (269)
T ss_pred EEEEeccccCCCceEEEEEECCCCCCCcCCEECCC---CcccCceEEcCCCCEEEEecC--C--CcEEEEEEChhhCCCC
Confidence 99887532212223456666553334876543321 112233445568988765211 1 1233332 22222110
Q ss_pred EEee-ceecCCCCcceee-eeEEEcCCCeEEEEEeecC--CCCcEEEEEeccCCcCCCCCcc--CCC--------CCCCC
Q 020796 174 RKYG-PIYIPNESLSVIQ-PVPFHTANRTLRVLMRSFN--GIGRVCMSESCDGGLTWSYAKP--TQL--------LNPNS 239 (321)
Q Consensus 174 ~~~~-~~~~~~~~~~~~~-~~~~~~~~G~l~~~~r~~~--~~~~~~~~~S~D~G~tWs~~~~--~~~--------~~~~~ 239 (321)
..+. .....+......| |.+.. .+|..++++.... ....+.+++|++-=--|+.... +-+ .++.
T Consensus 154 ~~~~~~~~~~~~~~~~~Egp~~~k-~~G~YYl~~S~~~~~~~~~~~~~rs~~~~GP~~~~~~~pl~~~~~~~~~~~g~G- 231 (269)
T cd08989 154 GKPLNKVIIKGTDDGLTEGPHLYK-INGKYYLTTAEGGTGYIHEETIARSDKIHGPYEGRPDNPLVLWDTPGNPLQKCG- 231 (269)
T ss_pred CCceeEEEecCCCCCccccceEEE-ECCEEEEEEeeCCCCCCeeEEEEEECCCCCCCCcCCCCcceeecCCCCCcccCC-
Confidence 0000 0001111112233 44554 5788888775422 1224666777643334665321 100 0111
Q ss_pred ceeEEEcCCCcEEEEEe
Q 020796 240 GIDGVKLKDGRLLLAYN 256 (321)
Q Consensus 240 ~~~~~~~~~g~~~lv~~ 256 (321)
...++..++|+.++++.
T Consensus 232 H~s~v~~~~G~~~~~~h 248 (269)
T cd08989 232 HASLVETPDGKWYLAHL 248 (269)
T ss_pred CcCeEECcCCCEEEEEE
Confidence 12345666788777764
No 89
>PF13810 DUF4185: Domain of unknown function (DUF4185)
Probab=87.77 E-value=20 Score=32.18 Aligned_cols=36 Identities=19% Similarity=0.340 Sum_probs=24.7
Q ss_pred CCCcEEEEEEeccc----cCCce---eEEEEecCCCCCCCCCc
Q 020796 90 PSNGLLLFYKIGQE----VQKWS---GCMKRSYNKGVTWSERE 125 (321)
Q Consensus 90 ~~G~l~l~~~~~~~----~~~~~---~~~~~S~D~G~TWs~~~ 125 (321)
-+|++||.|..... .+.|. ..+.+|+|+|+||+...
T Consensus 103 v~~~~Yl~~msv~~wg~~~G~W~tn~S~i~~S~D~G~tW~~~~ 145 (316)
T PF13810_consen 103 VGGRQYLHYMSVRNWGNVPGSWTTNYSGIAYSDDNGETWTVVP 145 (316)
T ss_pred ECCcEEEEEEEEccCCCCCCccccCceEEEEeCCCCCCceeCC
Confidence 36889987765322 23342 35899999999998664
No 90
>PF03664 Glyco_hydro_62: Glycosyl hydrolase family 62 ; InterPro: IPR005193 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha -L-arabinofuranosidases (3.2.1.55 from EC) which are all members of glycoside hydrolase family 62 (GH62 from CAZY). This enzyme hydrolyzed aryl alpha-L-arabinofuranosides and cleaves arabinosyl side chains from arabinoxylan and arabinan.; GO: 0046556 alpha-N-arabinofuranosidase activity, 0046373 L-arabinose metabolic process
Probab=86.73 E-value=19 Score=30.77 Aligned_cols=85 Identities=25% Similarity=0.375 Sum_probs=46.9
Q ss_pred CCCeEEE-EeCCCcEEEEEEeccccCCceeEEEEecC--CCCCCCCCccCCCCCCCCCCCccEEccCCeEEEeeecccCC
Q 020796 81 MWNPVLF-KLPSNGLLLFYKIGQEVQKWSGCMKRSYN--KGVTWSEREQLPPGILGPSKNKPILLENGLLLCGSSVESWN 157 (321)
Q Consensus 81 ~~~p~l~-~~~~G~l~l~~~~~~~~~~~~~~~~~S~D--~G~TWs~~~~l~~~~~g~~~~~~~~~~~G~~~~~~~~~~~~ 157 (321)
...|.+| ..|+...+|+|+-+. ..-.++.|+| +-..|+.|+.+..+........++ |-.++|.
T Consensus 76 ~vAP~vFYFaPk~~W~L~yQwg~----~~fsY~Ts~DptnpngWSapq~lf~g~i~~~~~g~i---D~~vI~D------- 141 (271)
T PF03664_consen 76 AVAPQVFYFAPKNIWYLAYQWGP----AAFSYSTSSDPTNPNGWSAPQPLFSGSISGSGTGPI---DQWVICD------- 141 (271)
T ss_pred cccceEEEecCCcEEEEEEecCC----CcceeecCCCCCCCccCCCCcccccccccCCCCCce---eeEEEec-------
Confidence 3447775 457777777776431 1113556665 567899999987543100000111 1112221
Q ss_pred CCcEEEEEECCCCceeEEeece
Q 020796 158 SWGSWMEVTVDAGRSWRKYGPI 179 (321)
Q Consensus 158 ~~~~~~~~S~D~G~tW~~~~~~ 179 (321)
....+++.+.|+|+-.....++
T Consensus 142 ~~n~yLFfa~DnGkiYRs~~~i 163 (271)
T PF03664_consen 142 DTNMYLFFAGDNGKIYRSSMPI 163 (271)
T ss_pred CCceEEEEcCCCCcEEEeccch
Confidence 2246788888888887765544
No 91
>cd08987 GH62 Glycosyl hydrolase family 62, characterized arabinofuranosidases. The glycosyl hydrolase family 62 includes eukaryotic and prokaryotic enzymes, most of which are characterized arabinofuranosidases (alpha-L-arabinofuranosidases; EC 3.2.1.55) that specifically cleave either alpha-1,2 or alpha-1,3-L-arabinofuranose side chains from xylans. The enzyme does not act on xylose moieties in xylan that are adorned with an arabinose side chain at both O2 and O3 positions, nor does it display any non-specific arabinofuranosidase activity. Several of these enzymes also contain carbohydrate binding modules (CBMs) that bind cellulose or xylan. The catalytic mechanism of this family has not yet been determined, but is predicted to display a single displacement or inverting mechanism, based on its location in the same carbohydrate-active enzymes database (CAZY) clan (Clan F) as that occupied by GH43, a well characterized inverting family. Similarly, the catalytic residues are predicted fr
Probab=86.71 E-value=6.3 Score=34.72 Aligned_cols=64 Identities=14% Similarity=0.113 Sum_probs=39.3
Q ss_pred cccceEEEecC-CcEEEEEecCCCCCCCCcEEEEEEeCC--C--CcCCcEEccC-CC---CCCCCCeEEEEeCCCcEEEE
Q 020796 27 CHASTIVEVDK-GHFLVAYFGGSCEGAPDVKIWLQTFKD--G--RWQSPIIADE-EP---NVPMWNPVLFKLPSNGLLLF 97 (321)
Q Consensus 27 ~~~p~l~~~~~-g~l~~~~~~~~~~g~~~~~i~~s~s~~--G--tWs~~~~~~~-~~---~~~~~~p~l~~~~~G~l~l~ 97 (321)
..+|.|+.+.. ++.+++|..+ .+.+++++| + .|+.++.+.. .. .....++.+ ...+++.+||
T Consensus 78 fwAPqVfyf~pk~kwYL~Yq~~--------~~~yaTs~dp~~P~~ws~~qpl~~~~~~~~~~~~ID~~v-I~Dd~~~YLf 148 (303)
T cd08987 78 RVAPQVFYFAPQNKWYLIYQWW--------PAAYSTNSDISNPNGWSAPQPLFSGTPNGSPGGWIDFWV-ICDDTNCYLF 148 (303)
T ss_pred cccCEEeeeccCCEEEEEEecC--------ceEEEeCCCCCCCCccCCCcccccCcccCCCCCccceeE-EeCCCCEEEE
Confidence 45899986664 4555555432 255788875 4 8999997743 11 112244555 4457888888
Q ss_pred EE
Q 020796 98 YK 99 (321)
Q Consensus 98 ~~ 99 (321)
+.
T Consensus 149 f~ 150 (303)
T cd08987 149 FS 150 (303)
T ss_pred Ee
Confidence 65
No 92
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=86.43 E-value=5.2 Score=34.39 Aligned_cols=112 Identities=14% Similarity=0.092 Sum_probs=57.6
Q ss_pred EEcCCCeEEEEEeecCCCCcEE-EEEec-cCCcCCCCCccCCCCCCCCceeEEEcCCCcEEEEEeCCCCCeEEEEEE---
Q 020796 194 FHTANRTLRVLMRSFNGIGRVC-MSESC-DGGLTWSYAKPTQLLNPNSGIDGVKLKDGRLLLAYNTVSRGVLKVALS--- 268 (321)
Q Consensus 194 ~~~~~G~l~~~~r~~~~~~~~~-~~~S~-D~G~tWs~~~~~~~~~~~~~~~~~~~~~g~~~lv~~~~~r~~l~~~~S--- 268 (321)
..++||+++...-...+...+. +.-+. |+...|.+.... +..+.....+..++||+++++.... .....+.=.
T Consensus 73 ~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~-m~~~RWYpT~~~L~DG~vlIvGG~~-~~t~E~~P~~~~ 150 (243)
T PF07250_consen 73 AFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPND-MQSGRWYPTATTLPDGRVLIVGGSN-NPTYEFWPPKGP 150 (243)
T ss_pred CCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECccc-ccCCCccccceECCCCCEEEEeCcC-CCcccccCCccC
Confidence 3568999987664433222222 22222 556788764321 3333334567889999999997432 000000000
Q ss_pred cCCCCCCCcceeecccCCCceeceEEEEccCCeEEEEEEe
Q 020796 269 KDDGDSWHDALTLEENLAMEFSYPAVIQASDGSVHITYTY 308 (321)
Q Consensus 269 ~D~G~tW~~~~~l~~~~~~~~~yp~~~~~~dg~l~v~y~~ 308 (321)
.....+|.....+.+ .....-||.+.+++||.|++...+
T Consensus 151 ~~~~~~~~~l~~~~~-~~~~nlYP~~~llPdG~lFi~an~ 189 (243)
T PF07250_consen 151 GPGPVTLPFLSQTSD-TLPNNLYPFVHLLPDGNLFIFANR 189 (243)
T ss_pred CCCceeeecchhhhc-cCccccCceEEEcCCCCEEEEEcC
Confidence 000111111111111 123468999999999998866544
No 93
>cd08985 GH43_6 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-1,4-xylosidase (xylan 1,4-beta-xylosidase; EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanase and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially e
Probab=86.25 E-value=22 Score=30.97 Aligned_cols=197 Identities=11% Similarity=0.036 Sum_probs=103.1
Q ss_pred ccccceEEEecCCcEEEEEecCCCCC-CCCcEEEEEEeCCC-CcCCcEE-ccCC-------CCCCCCCeEEEEe-CCCcE
Q 020796 26 SCHASTIVEVDKGHFLVAYFGGSCEG-APDVKIWLQTFKDG-RWQSPII-ADEE-------PNVPMWNPVLFKL-PSNGL 94 (321)
Q Consensus 26 ~~~~p~l~~~~~g~l~~~~~~~~~~g-~~~~~i~~s~s~~G-tWs~~~~-~~~~-------~~~~~~~p~l~~~-~~G~l 94 (321)
+.|.+.|+... |+.++. .+....+ ..-..+.+.+|+|- +|+.... +... +....+.|.+... .+|+-
T Consensus 2 ~ah~~~i~~~~-~~yY~y-gs~~~~~~~~~~gi~~~sS~DLvnW~~~g~vl~~~~~~~~~~~~~~~waP~v~y~~~~g~Y 79 (265)
T cd08985 2 QAHGGGILKVG-GTYYWY-GENKGGGDTAFGGVSCYSSTDLVNWTFEGLALTPEEDSADLGPGRIIERPKVIYNAKTGKY 79 (265)
T ss_pred ccccCceEEEC-CEEEEE-EEecCCCCcccccEEEEECCCCccceECceeccccccccccccCcEEECCeEEEeCCCCEE
Confidence 46888998776 566653 3322111 11234667778885 9997654 3221 1224677888765 46888
Q ss_pred EEEEEeccc-cCCceeEEEEecCCCCCCCCCccCCCCCCCCCCCccEEccCCeEEEeeecccCCCCcEEEEEECCCCcee
Q 020796 95 LLFYKIGQE-VQKWSGCMKRSYNKGVTWSEREQLPPGILGPSKNKPILLENGLLLCGSSVESWNSWGSWMEVTVDAGRSW 173 (321)
Q Consensus 95 ~l~~~~~~~-~~~~~~~~~~S~D~G~TWs~~~~l~~~~~g~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~S~D~G~tW 173 (321)
+|+|..... .......++.|++=-.-|+......+.....+-..+.+..||+.++....+ ....+.+..-+++..++
T Consensus 80 ~m~~~~~~~~~~~~~igvA~Sd~p~Gpf~~~~~~~~~~~~~~Dp~vf~DdDG~~Yl~~~~~--~~~~i~i~~L~~d~~~~ 157 (265)
T cd08985 80 VMWMHIDSSDYSDARVGVATSDTPTGPYTYLGSFRPLGYQSRDFGLFVDDDGTAYLLYSDR--DNSDLYIYRLTDDYLSV 157 (265)
T ss_pred EEEEEeCCCCCcceeEEEEEeCCCCCCCEECCccCCCCCCccCCceEEcCCCCEEEEEecC--CCCceEEEEeCCCcccc
Confidence 887775211 122234567776543446543322111111122334455678866543221 12345666666677776
Q ss_pred EEeeceecCCCCcceee-eeEEEcCCCeEEEEEeecC--CCCcEEEEEeccCCcCCCCCc
Q 020796 174 RKYGPIYIPNESLSVIQ-PVPFHTANRTLRVLMRSFN--GIGRVCMSESCDGGLTWSYAK 230 (321)
Q Consensus 174 ~~~~~~~~~~~~~~~~~-~~~~~~~~G~l~~~~r~~~--~~~~~~~~~S~D~G~tWs~~~ 230 (321)
.........+ ...| |.+... +|..++++.... ....+.+++|++---.|+...
T Consensus 158 ~~~~~~~~~~---~~~EaP~i~K~-~g~YYL~~S~~t~~~~~~~~y~~s~s~~GP~~~~~ 213 (265)
T cd08985 158 TGEVTTVFVG---AGREAPAIFKR-NGKYYLLTSGLTGWNPNDARYATATSILGPWTDLG 213 (265)
T ss_pred cceEEEccCC---CccccceEEEE-CCEEEEEEccCCCccCCceEEEEecCCCCCccccC
Confidence 5432111111 2233 566654 688888875432 123566677777666677654
No 94
>cd08992 GH43_like_1 Glycosyl hydrolase family 43, uncharacterized proteins. This subfamily is glycosyl hydrolase family 43 (GH43)-like and contains uncharacterized proteins. GH43 proteins are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the GH43 enzymes display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller.
Probab=85.81 E-value=28 Score=31.77 Aligned_cols=115 Identities=15% Similarity=0.244 Sum_probs=63.6
Q ss_pred cEEEEEECCCCceeEEeeceecCC-----CCcceeeeeEEEcCCCeEEEEEeecC------CCCcEEEEEeccCCcCCCC
Q 020796 160 GSWMEVTVDAGRSWRKYGPIYIPN-----ESLSVIQPVPFHTANRTLRVLMRSFN------GIGRVCMSESCDGGLTWSY 228 (321)
Q Consensus 160 ~~~~~~S~D~G~tW~~~~~~~~~~-----~~~~~~~~~~~~~~~G~l~~~~r~~~------~~~~~~~~~S~D~G~tWs~ 228 (321)
.+.++.|+ +|.+|+....+...+ ...+...|.++.. +|+.+|+++... ....+.+++|++.--.|+.
T Consensus 80 ~I~~A~S~-Dgv~W~~~g~~L~~~~~g~Wd~~~vwaP~Vi~~-dGkyYM~Ysa~~~~~~~~~~~~IGvA~AdSp~GpWtr 157 (349)
T cd08992 80 EIWHATSK-DGWTWKEEGPAIGRGEKGAYDDRSVFTPEVLEH-EGTYYLVYQVVKSPYLNRSFESIAMAVADSPYGPWTK 157 (349)
T ss_pred EEEEEECC-CCCCceECCccccCCCCCCccccceECcEEEEE-CCEEEEEEEecccccCCCCcceEEEEEECCccccccc
Confidence 35555565 578998776432211 1234567787764 689999986421 1235666777665445986
Q ss_pred Ccc-CCCCCCC------------------------CceeEEEcCCCcEEEEEeCC----------CCCeEEEEEEcCCCC
Q 020796 229 AKP-TQLLNPN------------------------SGIDGVKLKDGRLLLAYNTV----------SRGVLKVALSKDDGD 273 (321)
Q Consensus 229 ~~~-~~~~~~~------------------------~~~~~~~~~~g~~~lv~~~~----------~r~~l~~~~S~D~G~ 273 (321)
... +-.|... ..+.++. .+|+.+|.|+.. ....+.+++|.+---
T Consensus 158 ~d~Pil~p~~dg~w~~d~~~~~~~~~~g~wD~~~v~~P~v~~-~~g~yyL~Y~G~~~g~~~~~~~~~~~iGvAvAdsP~G 236 (349)
T cd08992 158 SDEPILSPSNDGIWKGDEDNRFLVKKKGSFDSHKVHDPCLFP-FNGKFYLYYKGEQMGEEMTMGGRETKWGVAIADDPEG 236 (349)
T ss_pred CCCcEecCCcCCceeeccCceeEeccCCCcccCceECCEEEE-ECCEEEEEEEccccCcccccCCCCceEEEEEECCCCC
Confidence 321 1011100 0113344 368999998643 123578888875444
Q ss_pred CCCc
Q 020796 274 SWHD 277 (321)
Q Consensus 274 tW~~ 277 (321)
-|.+
T Consensus 237 Pf~r 240 (349)
T cd08992 237 PYVK 240 (349)
T ss_pred CCEe
Confidence 5654
No 95
>KOG0228 consensus Beta-fructofuranosidase (invertase) [Carbohydrate transport and metabolism]
Probab=85.10 E-value=28 Score=33.06 Aligned_cols=138 Identities=14% Similarity=0.186 Sum_probs=74.6
Q ss_pred CCcEEEEEecCCC-CCCCCcEEE-EEEeCCC-CcCC-cEEccCCC---CCCCCCeEEEEeCCCcEEEEEEeccccCC---
Q 020796 37 KGHFLVAYFGGSC-EGAPDVKIW-LQTFKDG-RWQS-PIIADEEP---NVPMWNPVLFKLPSNGLLLFYKIGQEVQK--- 106 (321)
Q Consensus 37 ~g~l~~~~~~~~~-~g~~~~~i~-~s~s~~G-tWs~-~~~~~~~~---~~~~~~p~l~~~~~G~l~l~~~~~~~~~~--- 106 (321)
+|..+++|.=+.. .-.+++ ++ =+.|+|= +|.. |-.+.++. ...++.-....+++|.-.++|+. .....
T Consensus 69 kG~yHLFyQyNP~gavwg~i-vWGHavSkDLinW~~lp~Ai~Ps~~~ding~wSGSati~~~~~~vilytg-~d~~~rqV 146 (571)
T KOG0228|consen 69 KGKYHLFYQYNPKGAVWGNI-VWGHAVSKDLINWEALPPAIAPSEWFDINGCWSGSATIDPNNSPVILYTG-IDPNNRQV 146 (571)
T ss_pred CcEEEEEEecCCCCceeeee-EeeeecchhhccccccCcccCCCCccccCccccceEEEccCCCeEEEecc-cCcCceEE
Confidence 4777775533322 112232 33 3456776 9986 33344322 12455555667788887777763 22111
Q ss_pred ------c----eeEEEEecCCCCCCCCCccCCCCCCCCCCCccE--EccCCeEEEeeecccCCCCcEEEEEECCCCceeE
Q 020796 107 ------W----SGCMKRSYNKGVTWSEREQLPPGILGPSKNKPI--LLENGLLLCGSSVESWNSWGSWMEVTVDAGRSWR 174 (321)
Q Consensus 107 ------~----~~~~~~S~D~G~TWs~~~~l~~~~~g~~~~~~~--~~~~G~~~~~~~~~~~~~~~~~~~~S~D~G~tW~ 174 (321)
+ ...+..|.|+|.++..+..+..-..-..+.+.+ ..++|+|.+..... .......+++++++=++|+
T Consensus 147 qn~a~p~d~sdp~l~~w~k~~gnp~~~p~~V~~in~s~FRDPttaW~~~dgkWrm~vgsk-~~q~g~a~~Y~S~Df~~W~ 225 (571)
T KOG0228|consen 147 QNYAYPKDVSDPQLIAWSKDGGNPFMKPDKVLGINSSQFRDPTTAWFGQDGKWRMTVGSK-IKQRGKAIIYSSDDFKHWT 225 (571)
T ss_pred EEEeccCCCCchhhheeecCCCceeeccccccCCChhhccCCceeeecCCCcEEEEEEee-cCccceEEEEeccchhhhh
Confidence 0 113678899999998776543210011222222 33578886543221 1234567778888889999
Q ss_pred Eee
Q 020796 175 KYG 177 (321)
Q Consensus 175 ~~~ 177 (321)
+..
T Consensus 226 k~~ 228 (571)
T KOG0228|consen 226 KSS 228 (571)
T ss_pred ccc
Confidence 865
No 96
>cd08997 GH68 Glycosyl hydrolase family 68, includes levansucrase, beta-fructofuranosidase and inulosucrase. Glycosyl hydrolase family 68 (GH68) consists of frucosyltransferases (FTFs) that include levansucrase (EC 2.4.1.10), beta-fructofuranosidase (EC 3.2.1.26) and inulosucrase (EC 2.4.1.9), all of which use sucrose as their preferential donor substrate. Levansucrase, also known as beta-D-fructofuranosyl transferase, catalyzes the transfer of the sucrose fructosyl moiety to a growing levan chain. Similarly, inulosucrase catalyzes long inulin-type of fructans, and beta-fructofuranosidases create fructooligosaccharides (FOS). However, in the absence of high fructan/sucrose ratio, some GH68 enzymes can also use fructan as donor substrate. GH68 retaining enzymes (i.e. they retain the configuration at anomeric carbon atom of the substrate) catalyze hydrolysis in two steps involving a covalent glycosyl enzyme intermediate: an aspartate located close to the N-terminus acts as the catalytic n
Probab=84.32 E-value=33 Score=31.32 Aligned_cols=48 Identities=19% Similarity=0.232 Sum_probs=33.6
Q ss_pred CcEEEEEEeCCC-CcCCcEEccCC---CCCCCCCeEEEEeCCCcEEEEEEec
Q 020796 54 DVKIWLQTFKDG-RWQSPIIADEE---PNVPMWNPVLFKLPSNGLLLFYKIG 101 (321)
Q Consensus 54 ~~~i~~s~s~~G-tWs~~~~~~~~---~~~~~~~p~l~~~~~G~l~l~~~~~ 101 (321)
...+....|+|+ +|.....+.++ +...++.+..+...+|+++|||+..
T Consensus 40 ~~~wgh~~S~dlv~W~~~~~l~p~~~~d~~g~wSGsa~~~~dg~~~lfYTg~ 91 (349)
T cd08997 40 DARIGYFYSRAGGNWIDGGKVFPDGLSPGSREWSGSATLDDDGTVQLFYTAV 91 (349)
T ss_pred ceEEEEEEeCCCCcccCCCccCCCCcccCCCeEcceEEEeCCCeEEEEEecc
Confidence 456888889888 99985443332 2345666776666679999999953
No 97
>KOG3511 consensus Sortilin and related receptors [General function prediction only]
Probab=83.80 E-value=51 Score=33.12 Aligned_cols=98 Identities=17% Similarity=0.229 Sum_probs=48.3
Q ss_pred eeeeEEecCCCCCCCccccceEEEecC-CcEEEEEecCCCCCCCCcEEEEEEeCCCCcCCcEEccCCCCCCCCCeEEEEe
Q 020796 11 VAEEFTFPANSAPFKSCHASTIVEVDK-GHFLVAYFGGSCEGAPDVKIWLQTFKDGRWQSPIIADEEPNVPMWNPVLFKL 89 (321)
Q Consensus 11 ~~~~~~f~~~~~~~~~~~~p~l~~~~~-g~l~~~~~~~~~~g~~~~~i~~s~s~~GtWs~~~~~~~~~~~~~~~p~l~~~ 89 (321)
+.+...|+....+... -.|+.++. +...+++.. +..++.|++.|.||...+.+.+. . ++.+
T Consensus 180 ~l~~~~fq~~~~~~~~---~~ll~~ps~~D~~l~~~~-------dqkL~iS~D~G~tW~li~ev~~~--~------~~~d 241 (720)
T KOG3511|consen 180 FLQGNTFQPKVPPFPA---ADLLFHPSVSDGLLLLST-------DQKLWISKDGGRTWELIHEVTGL--Y------WFGD 241 (720)
T ss_pred hcccceecccCCCchh---hhheeccccCccceeeec-------cCcEEEecCCCccceEeeeccce--e------EEee
Confidence 5666677776433222 23344443 222222212 12466666555599998874421 1 1112
Q ss_pred CCCc-EEEEEEeccccCCceeEEEEecCCCCCCCCCccC
Q 020796 90 PSNG-LLLFYKIGQEVQKWSGCMKRSYNKGVTWSEREQL 127 (321)
Q Consensus 90 ~~G~-l~l~~~~~~~~~~~~~~~~~S~D~G~TWs~~~~l 127 (321)
..+- +..-+.. .........+.+|.|.|++|.+....
T Consensus 242 v~~~~~~~~~~~-~e~~~~~~~fyyT~D~Gksw~e~~l~ 279 (720)
T KOG3511|consen 242 VGNIPFTIPYRA-FEAIDVSSEFYYTLDRGKSWNEITLS 279 (720)
T ss_pred ccCccccccccc-ccccCCCceEEEEcccCcccceeecc
Confidence 1111 1111111 11122345688999999999987653
No 98
>cd08988 GH43_ABN Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes mostly enzymes with alpha-L-arabinofuranosidase (AFN; EC 3.2.1.55) and endo-alpha-L-arabinanase (ABN; EC 3.2.1.99) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. The GH43 ABN enzymes hydrolyze alpha-1,5-L-arabinofuranoside linkages while the ABF enzymes cleave arabinose side chains so that the combined actions of these two enzymes reduce arabinan to L-arabinose and/or arabinooligosaccharides. These arabinan-degrading enzymes are important in the food industry for efficient production of L-arabinose from agricultural waste; L-arabinose is often used as a bioactive sweetener. A common structural feature of GH43 enzymes is a 5-bla
Probab=81.59 E-value=36 Score=29.81 Aligned_cols=186 Identities=15% Similarity=0.172 Sum_probs=90.9
Q ss_pred ccceEEEecCCcEEEEEecCCCCCCCCcEEEEEEeCCC-CcCCcEE-ccCCC----------CCCCCCeEEEEeCCCcEE
Q 020796 28 HASTIVEVDKGHFLVAYFGGSCEGAPDVKIWLQTFKDG-RWQSPII-ADEEP----------NVPMWNPVLFKLPSNGLL 95 (321)
Q Consensus 28 ~~p~l~~~~~g~l~~~~~~~~~~g~~~~~i~~s~s~~G-tWs~~~~-~~~~~----------~~~~~~p~l~~~~~G~l~ 95 (321)
|.|+|+... ++.+++ ... . .+.+.+|+|- +|+.... +...+ ....+.|.+... +|+-+
T Consensus 1 ~DP~vi~~~-~~YY~~-~T~-----~--g~~v~~S~DL~~W~~~g~~~~~~~~~~~~~~~~~~~~~WAP~v~~~-~G~yy 70 (279)
T cd08988 1 HDPVIIKEG-DTWYVF-GTG-----P--GITILSSKDLVNWTYSGSAFATEPTWKKRVPPSFDGHLWAPDIYQH-NGKFY 70 (279)
T ss_pred CCCEEEEEC-CEEEEE-Eec-----C--CEEEEECCCcCCccccCccccCCCccccccCCCCCCCEecceEEEE-CCEEE
Confidence 568998876 566654 222 1 3677888886 9987543 22111 134678888765 69999
Q ss_pred EEEEecccc-CCceeEEEEecC-CCC----CCCCCccCCC-C---CCCCCCCccEEccCCeEEEeeecccCCCCcEEEE-
Q 020796 96 LFYKIGQEV-QKWSGCMKRSYN-KGV----TWSEREQLPP-G---ILGPSKNKPILLENGLLLCGSSVESWNSWGSWME- 164 (321)
Q Consensus 96 l~~~~~~~~-~~~~~~~~~S~D-~G~----TWs~~~~l~~-~---~~g~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~- 164 (321)
|+|...... ......+..|++ .|. .|+.+..+.. . ....+-+.+++..||+.++.. ...+. .+.+.
T Consensus 71 lyys~~~~~~~~~~igva~s~~p~Gp~~~~~w~~~~~i~~~~~~~~~~~iDp~~f~DdDG~~Yl~~-g~~~~--gi~~~e 147 (279)
T cd08988 71 LYYSVSAFGSNTSAIGLAVNKTIDGPSPDYGWEKGGVVISSDASDNYNAIDPAIIFDQHGQPWLSF-GSFWG--GIKLFE 147 (279)
T ss_pred EEEEeccCCCCCceEEEEEcCCCCCCCcCcCccccCceEecCCCCCCCccCCceEEcCCCCEEEEe-cccCC--CEEEEE
Confidence 988753221 112344666655 233 2554333321 1 111133334566679987752 21111 23333
Q ss_pred EECCCCce--eEEeeceecCCCCcceee-eeEEEcCCCeEEEEEeecC------CCCcEEEEEeccCCcCCC
Q 020796 165 VTVDAGRS--WRKYGPIYIPNESLSVIQ-PVPFHTANRTLRVLMRSFN------GIGRVCMSESCDGGLTWS 227 (321)
Q Consensus 165 ~S~D~G~t--W~~~~~~~~~~~~~~~~~-~~~~~~~~G~l~~~~r~~~------~~~~~~~~~S~D~G~tWs 227 (321)
.+.|.++. -.....+..........| |.+.. .+|..++++.... ....+.+++|++----|+
T Consensus 148 L~~d~~~~~~~~~~~~i~~~~~~~~~~Egp~i~k-~~g~YYl~~S~g~~~~~~~~~y~v~~arS~~~~GPy~ 218 (279)
T cd08988 148 LDKDTMKPAEPGELHSIAGRERSSAAIEAPFILY-RGDYYYLFVSFGLCCRGGDSTYKIAVGRSKNITGPYL 218 (279)
T ss_pred ECcccCCccCCCcceEEeccCCCCCceEeeEEEE-cCCeEEEEEEcCcccCCCCCCeEEEEEEeCCCCCCCC
Confidence 34443331 011111111111112334 45554 4688888764321 123566777765333344
No 99
>PF03404 Mo-co_dimer: Mo-co oxidoreductase dimerisation domain; InterPro: IPR005066 The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cis-dithiolene moiety to molybdopterin (MPT). MoCF is ubiquitous in nature, and the pathway for MoCF biosynthesis is conserved in all three domains of life. MoCF-containing enzymes function as oxidoreductases in carbon, nitrogen, and sulphur metabolism [, ]. In Escherichia coli, biosynthesis of MoCF is a three stage process. It begins with the MoaA and MoaC conversion of GTP to the meta-stable pterin intermediate precursor Z. The second stage involves MPT synthase (MoaD and MoaE), which converts precursor Z to MPT; MoeB is involved in the recycling of MPT synthase. The final step in MoCF synthesis is the attachment of mononuclear Mo to MPT, a process that requires MoeA and which is enhanced by MogA in an Mg2 ATP-dependent manner []. MoCF is the active co-factor in eukaryotic and some prokaryotic molybdo-enzymes, but the majority of bacterial enzymes requiring MoCF, need a modification of MTP for it to be active; MobA is involved in the attachment of a nucleotide monophosphate to MPT resulting in the MGD co-factor, the active co-factor for most prokaryotic molybdo-enzymes. Bacterial two-hybrid studies have revealed the close interactions between MoeA, MogA, and MobA in the synthesis of MoCF []. Moreover the close functional association of MoeA and MogA in the synthesis of MoCF is supported by fact that the known eukaryotic homologues to MoeA and MogA exist as fusion proteins: CNX1 (Q39054 from SWISSPROT) of Arabidopsis thaliana (Mouse-ear cress), mammalian Gephryin (e.g. Q9NQX3 from SWISSPROT) and Drosophila melanogaster (Fruit fly) Cinnamon (P39205 from SWISSPROT) []. This domain is found in molybdopterin cofactor oxidoreductases, such as in the C-terminal of Mo-containing sulphite oxidase, which catalyses the conversion of sulphite to sulphate, the terminal step in the oxidative degradation of cysteine and methionine []. This domain is involved in dimer formation, and has an Ig-fold structure [].; GO: 0016491 oxidoreductase activity, 0030151 molybdenum ion binding, 0055114 oxidation-reduction process; PDB: 2C9X_A 2CA3_A 2BLF_A 2CA4_A 2BPB_A 2XTS_C 2BII_A 2BIH_A 1OGP_A 2A9A_B ....
Probab=81.44 E-value=19 Score=27.69 Aligned_cols=48 Identities=15% Similarity=0.245 Sum_probs=27.2
Q ss_pred cEEEEEECCCCceeEEeeceecCCC-------Ccc--eeeeeEEEcC-CCeEEEEEeec
Q 020796 160 GSWMEVTVDAGRSWRKYGPIYIPNE-------SLS--VIQPVPFHTA-NRTLRVLMRSF 208 (321)
Q Consensus 160 ~~~~~~S~D~G~tW~~~~~~~~~~~-------~~~--~~~~~~~~~~-~G~l~~~~r~~ 208 (321)
-..|-+|.|+|+||.... +..+.. ... ..+..+...+ .|+..+.+|..
T Consensus 43 I~rVEVS~DgG~tW~~A~-l~~~~~~~~~g~~~~aW~~W~~~~~~~~~~G~~~i~~RA~ 100 (131)
T PF03404_consen 43 IARVEVSTDGGKTWQEAT-LDGPESPPRYGEARWAWRLWEYDWPPPSLPGEYTIMVRAT 100 (131)
T ss_dssp EEEEEEESSTTSSEEE-E-EESTSCCCHHTS-TTS-EEEEEEEEECSHCCEEEEEEEEE
T ss_pred eEEEEEEeCCCCCcEEeE-eccCCCcccccccCcccceeeeccCcCccccceEEEEEEe
Confidence 457889999999999875 332221 111 1233333333 47777777654
No 100
>PF03664 Glyco_hydro_62: Glycosyl hydrolase family 62 ; InterPro: IPR005193 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha -L-arabinofuranosidases (3.2.1.55 from EC) which are all members of glycoside hydrolase family 62 (GH62 from CAZY). This enzyme hydrolyzed aryl alpha-L-arabinofuranosides and cleaves arabinosyl side chains from arabinoxylan and arabinan.; GO: 0046556 alpha-N-arabinofuranosidase activity, 0046373 L-arabinose metabolic process
Probab=81.24 E-value=28 Score=29.80 Aligned_cols=44 Identities=14% Similarity=0.120 Sum_probs=29.7
Q ss_pred cccceEEEecCCcEEEEEecCCCCCCCCcEEEEEEeCC---C-CcCCcEEccC
Q 020796 27 CHASTIVEVDKGHFLVAYFGGSCEGAPDVKIWLQTFKD---G-RWQSPIIADE 75 (321)
Q Consensus 27 ~~~p~l~~~~~g~l~~~~~~~~~~g~~~~~i~~s~s~~---G-tWs~~~~~~~ 75 (321)
.-.|.|+++...++|...++- | .....++++.| - .|+.|+.+..
T Consensus 76 ~vAP~vFYFaPk~~W~L~yQw---g--~~~fsY~Ts~DptnpngWSapq~lf~ 123 (271)
T PF03664_consen 76 AVAPQVFYFAPKNIWYLAYQW---G--PAAFSYSTSSDPTNPNGWSAPQPLFS 123 (271)
T ss_pred cccceEEEecCCcEEEEEEec---C--CCcceeecCCCCCCCccCCCCccccc
Confidence 346899988887777665542 2 12356788765 2 8999998753
No 101
>cd08987 GH62 Glycosyl hydrolase family 62, characterized arabinofuranosidases. The glycosyl hydrolase family 62 includes eukaryotic and prokaryotic enzymes, most of which are characterized arabinofuranosidases (alpha-L-arabinofuranosidases; EC 3.2.1.55) that specifically cleave either alpha-1,2 or alpha-1,3-L-arabinofuranose side chains from xylans. The enzyme does not act on xylose moieties in xylan that are adorned with an arabinose side chain at both O2 and O3 positions, nor does it display any non-specific arabinofuranosidase activity. Several of these enzymes also contain carbohydrate binding modules (CBMs) that bind cellulose or xylan. The catalytic mechanism of this family has not yet been determined, but is predicted to display a single displacement or inverting mechanism, based on its location in the same carbohydrate-active enzymes database (CAZY) clan (Clan F) as that occupied by GH43, a well characterized inverting family. Similarly, the catalytic residues are predicted fr
Probab=78.21 E-value=49 Score=29.34 Aligned_cols=134 Identities=16% Similarity=0.246 Sum_probs=68.9
Q ss_pred CCCCeEEE-EeCCCcEEEEEEeccccCCceeEEEEecC--CCCCCCCCccCCCCCCCCCCCccEEccCCeEEEeeecccC
Q 020796 80 PMWNPVLF-KLPSNGLLLFYKIGQEVQKWSGCMKRSYN--KGVTWSEREQLPPGILGPSKNKPILLENGLLLCGSSVESW 156 (321)
Q Consensus 80 ~~~~p~l~-~~~~G~l~l~~~~~~~~~~~~~~~~~S~D--~G~TWs~~~~l~~~~~g~~~~~~~~~~~G~~~~~~~~~~~ 156 (321)
..+-|.++ ..++++-+|+|+.+ ...++.|+| +-..|+.++.+..+.........| |-.+++
T Consensus 77 ~fwAPqVfyf~pk~kwYL~Yq~~------~~~yaTs~dp~~P~~ws~~qpl~~~~~~~~~~~~I---D~~vI~------- 140 (303)
T cd08987 77 YRVAPQVFYFAPQNKWYLIYQWW------PAAYSTNSDISNPNGWSAPQPLFSGTPNGSPGGWI---DFWVIC------- 140 (303)
T ss_pred ccccCEEeeeccCCEEEEEEecC------ceEEEeCCCCCCCCccCCCcccccCcccCCCCCcc---ceeEEe-------
Confidence 46789887 34788888898741 235777766 667899999886532100000011 111111
Q ss_pred CCCcEEEEEECCCCceeEEeecee-cCCC------------Ccceee-eeEEEc-CCCeEEEEEeecCC-CCcEEE-EEe
Q 020796 157 NSWGSWMEVTVDAGRSWRKYGPIY-IPNE------------SLSVIQ-PVPFHT-ANRTLRVLMRSFNG-IGRVCM-SES 219 (321)
Q Consensus 157 ~~~~~~~~~S~D~G~tW~~~~~~~-~~~~------------~~~~~~-~~~~~~-~~G~l~~~~r~~~~-~~~~~~-~~S 219 (321)
+....+++.+.|+|+-|....++. .++. .....| +.+... +.++.+|++...+. .++-++ ..|
T Consensus 141 Dd~~~YLff~~dnG~iyra~~~~~nFp~~~~~~~~~~~~~~~~~lfEa~~Vykv~G~~~YlmiveA~g~~~~rYfrs~Ts 220 (303)
T cd08987 141 DDTNCYLFFSDDNGKLYRSSTTLGNFPNGGTETVIIMSDSNKNNLFEASNVYKVKGQNQYLLIVEAIGSDGGRYFRSWTA 220 (303)
T ss_pred CCCCEEEEEecCCCeEEEEecchhhCCCCCCccEEEecCCCccccceeeEEEEECCCeEEEEEEEecCCCCCCeEEEEEc
Confidence 112356667777777776554332 2210 112223 334333 23377777765542 112211 344
Q ss_pred ccCCcCCCCC
Q 020796 220 CDGGLTWSYA 229 (321)
Q Consensus 220 ~D~G~tWs~~ 229 (321)
+.-+-+|++-
T Consensus 221 ~Sl~GpWt~~ 230 (303)
T cd08987 221 TSLDGPWTPL 230 (303)
T ss_pred CCCCCCceec
Confidence 5556678765
No 102
>KOG3511 consensus Sortilin and related receptors [General function prediction only]
Probab=77.35 E-value=6.3 Score=39.24 Aligned_cols=60 Identities=18% Similarity=0.075 Sum_probs=35.0
Q ss_pred EEEEecCCCCCCCCCccCCCCCCCCCCCccEEccCCeEEE-eeeccc-CCCCcEEEEEECCCCceeEEee
Q 020796 110 CMKRSYNKGVTWSEREQLPPGILGPSKNKPILLENGLLLC-GSSVES-WNSWGSWMEVTVDAGRSWRKYG 177 (321)
Q Consensus 110 ~~~~S~D~G~TWs~~~~l~~~~~g~~~~~~~~~~~G~~~~-~~~~~~-~~~~~~~~~~S~D~G~tW~~~~ 177 (321)
.++.|.|+|+||.....+.....+ ...+.+.. ..+..- .......+++|+|.|++|.+..
T Consensus 216 kL~iS~D~G~tW~li~ev~~~~~~--------~dv~~~~~~~~~~~~e~~~~~~~fyyT~D~Gksw~e~~ 277 (720)
T KOG3511|consen 216 KLWISKDGGRTWELIHEVTGLYWF--------GDVGNIPFTIPYRAFEAIDVSSEFYYTLDRGKSWNEIT 277 (720)
T ss_pred cEEEecCCCccceEeeeccceeEE--------eeccCcccccccccccccCCCceEEEEcccCcccceee
Confidence 588999999999988764332211 11111111 001000 1123567899999999999874
No 103
>cd08988 GH43_ABN Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes mostly enzymes with alpha-L-arabinofuranosidase (AFN; EC 3.2.1.55) and endo-alpha-L-arabinanase (ABN; EC 3.2.1.99) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. The GH43 ABN enzymes hydrolyze alpha-1,5-L-arabinofuranoside linkages while the ABF enzymes cleave arabinose side chains so that the combined actions of these two enzymes reduce arabinan to L-arabinose and/or arabinooligosaccharides. These arabinan-degrading enzymes are important in the food industry for efficient production of L-arabinose from agricultural waste; L-arabinose is often used as a bioactive sweetener. A common structural feature of GH43 enzymes is a 5-bla
Probab=68.98 E-value=79 Score=27.61 Aligned_cols=224 Identities=15% Similarity=0.082 Sum_probs=105.8
Q ss_pred CeEEEEeCCCcEEEEEEeccccCCceeEEEEecCCCCCCCCCccCCCC-C----------CCCCCCccEEccCCeEEEee
Q 020796 83 NPVLFKLPSNGLLLFYKIGQEVQKWSGCMKRSYNKGVTWSEREQLPPG-I----------LGPSKNKPILLENGLLLCGS 151 (321)
Q Consensus 83 ~p~l~~~~~G~l~l~~~~~~~~~~~~~~~~~S~D~G~TWs~~~~l~~~-~----------~g~~~~~~~~~~~G~~~~~~ 151 (321)
+|.++.. +|+.+++.+. . ...+.+|+| -.+|+....+.+. . .+.+..+-+...+|+.++..
T Consensus 2 DP~vi~~-~~~YY~~~T~-~-----g~~v~~S~D-L~~W~~~g~~~~~~~~~~~~~~~~~~~~~WAP~v~~~~G~yylyy 73 (279)
T cd08988 2 DPVIIKE-GDTWYVFGTG-P-----GITILSSKD-LVNWTYSGSAFATEPTWKKRVPPSFDGHLWAPDIYQHNGKFYLYY 73 (279)
T ss_pred CCEEEEE-CCEEEEEEec-C-----CEEEEECCC-cCCccccCccccCCCccccccCCCCCCCEecceEEEECCEEEEEE
Confidence 5777665 5666665432 1 235777776 5789876543221 0 01111222344578865543
Q ss_pred ecccC--CCCcEEEEEECC-CCc----eeEEeeceecCC--CCcceeeeeEEEcCCCeEEEEEeecCCCCcEEE-EEecc
Q 020796 152 SVESW--NSWGSWMEVTVD-AGR----SWRKYGPIYIPN--ESLSVIQPVPFHTANRTLRVLMRSFNGIGRVCM-SESCD 221 (321)
Q Consensus 152 ~~~~~--~~~~~~~~~S~D-~G~----tW~~~~~~~~~~--~~~~~~~~~~~~~~~G~l~~~~r~~~~~~~~~~-~~S~D 221 (321)
..... ....+.++.|++ .|. .|+...++.... .....+.|+++..+||+.++++.... +.+++ ..+.|
T Consensus 74 s~~~~~~~~~~igva~s~~p~Gp~~~~~w~~~~~i~~~~~~~~~~~iDp~~f~DdDG~~Yl~~g~~~--~gi~~~eL~~d 151 (279)
T cd08988 74 SVSAFGSNTSAIGLAVNKTIDGPSPDYGWEKGGVVISSDASDNYNAIDPAIIFDQHGQPWLSFGSFW--GGIKLFELDKD 151 (279)
T ss_pred EeccCCCCCceEEEEEcCCCCCCCcCcCccccCceEecCCCCCCCccCCceEEcCCCCEEEEecccC--CCEEEEEECcc
Confidence 22111 123456777765 233 265433332111 12345778888888999999875421 23444 34445
Q ss_pred CCcC--CCCCccCC-CC---CCCCceeEEEcCCCcEEEEEeCC-------CCCeEEEEEEcCCCCCCCcc--e-eecc--
Q 020796 222 GGLT--WSYAKPTQ-LL---NPNSGIDGVKLKDGRLLLAYNTV-------SRGVLKVALSKDDGDSWHDA--L-TLEE-- 283 (321)
Q Consensus 222 ~G~t--Ws~~~~~~-~~---~~~~~~~~~~~~~g~~~lv~~~~-------~r~~l~~~~S~D~G~tW~~~--~-~l~~-- 283 (321)
.++. -.....+. .+ ....+..+.. .+|..+|.+... ....+.+++|++=---|... . ++..
T Consensus 152 ~~~~~~~~~~~~i~~~~~~~~~~Egp~i~k-~~g~YYl~~S~g~~~~~~~~~y~v~~arS~~~~GPy~~~~~~p~~~~~~ 230 (279)
T cd08988 152 TMKPAEPGELHSIAGRERSSAAIEAPFILY-RGDYYYLFVSFGLCCRGGDSTYKIAVGRSKNITGPYLDKTGRSMLQGGG 230 (279)
T ss_pred cCCccCCCcceEEeccCCCCCceEeeEEEE-cCCeEEEEEEcCcccCCCCCCeEEEEEEeCCCCCCCCCCCCCCcccCCc
Confidence 4331 01111110 00 0112233344 578888876431 22456777776321134332 1 1111
Q ss_pred -----cCC--CceeceEEEEccCCeEEEEEEe---CCCeeEEEEe
Q 020796 284 -----NLA--MEFSYPAVIQASDGSVHITYTY---NRTQIKHVVL 318 (321)
Q Consensus 284 -----~~~--~~~~yp~~~~~~dg~l~v~y~~---~~~~i~~~~~ 318 (321)
... .+.++..+++.+ |.-+++|-. ++...|.+.+
T Consensus 231 ~~~~~~~~~~~g~GH~~v~~~~-g~~~~~yH~~~~~~~~~r~~~i 274 (279)
T cd08988 231 TILDKGNDRWVGPGHNSAYTDD-GKDYLVLHAYDAADNGEPKLKI 274 (279)
T ss_pred eEEEcCCCcEEcCCCCEEEeCC-CCEEEEEEEeeCCCCCCcEEEE
Confidence 000 122566777754 777777744 3344444443
No 104
>cd09003 GH43_AXH_1 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes that have been characterized with beta-xylosidase (EC 3.2.1.37), alpha-L-arabinofuranosidase (EC 3.2.1.55), xylanase (endo-alpha-L-arabinanase) as well as arabinoxylan arabinofuranohydrolase (AXH) activities. These are all inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. AXHs specifically hydrolyze the glycosidic bond between arabinofuranosyl substituents and xylopyranosyl backbone residues of arabinoxylan. Several of these enzymes also contain carbohydrate binding modules (CBMs) that bind cellulose
Probab=68.87 E-value=86 Score=27.98 Aligned_cols=193 Identities=13% Similarity=-0.007 Sum_probs=96.8
Q ss_pred ccccceEEEecCCcEEEEEecCCCCCC--------C---CcEEEEEEeCCC-CcCCcEEccC--C-C--CCCCCCeEEEE
Q 020796 26 SCHASTIVEVDKGHFLVAYFGGSCEGA--------P---DVKIWLQTFKDG-RWQSPIIADE--E-P--NVPMWNPVLFK 88 (321)
Q Consensus 26 ~~~~p~l~~~~~g~l~~~~~~~~~~g~--------~---~~~i~~s~s~~G-tWs~~~~~~~--~-~--~~~~~~p~l~~ 88 (321)
+.+.|+++.. +|++++.- ....... . -..+.+.+|+|= +|+....+.. . + ....+.|.+..
T Consensus 8 ~~aDP~~~~~-~g~yY~~~-t~~~~~~~~~~~~~~~~~~~~~i~v~~S~DL~~W~~~g~v~~~~~~~~w~~~~WAP~v~~ 85 (311)
T cd09003 8 YGADPTAVVY-NGRVYVYT-TNDDYEYDSNTIKDNNYYNINDITVISSDDMVNWTDHGEIFVPNGIAKWAGNSWAPSIAV 85 (311)
T ss_pred ccCCCCeEEE-CCEEEEEe-CCCCccccccccccCCccccCcEEEEECCCCCCcEEcccccCcCCCCCcccccCCCceEE
Confidence 4567888755 57877643 2211110 0 123677788885 9988654332 1 1 12467888876
Q ss_pred eC---CCcEEEEEEeccccCCceeEEEEecCCCCCCCCCc--cC-CCC---CCC---CCCCccEEccCCeEEEeeecccC
Q 020796 89 LP---SNGLLLFYKIGQEVQKWSGCMKRSYNKGVTWSERE--QL-PPG---ILG---PSKNKPILLENGLLLCGSSVESW 156 (321)
Q Consensus 89 ~~---~G~l~l~~~~~~~~~~~~~~~~~S~D~G~TWs~~~--~l-~~~---~~g---~~~~~~~~~~~G~~~~~~~~~~~ 156 (321)
.. +|+-+|+|... .....++.|++=--.|+.+. .+ ..+ ..+ .+-..+++..||++++.......
T Consensus 86 ~~~~~~gkyylyy~~~----~~~igva~SdsP~GP~~~~~g~~l~~~~~~~~~~~~~~iDp~~f~DdDG~~Yl~~g~~~~ 161 (311)
T cd09003 86 KKINGKGKFYLYFANG----GGGIGVLTADSPVGPWTDPLGKPLITGSTPGCAGVVWLFDPAVFVDDDGQGYLYFGGGVP 161 (311)
T ss_pred eccCCCCEEEEEEecC----CCeEEEEEcCCCCCCcccCCCCeeecCCCCCccCCccccCCCeEECCCCCEEEEECCccC
Confidence 53 39999988742 22356777877444688641 22 111 111 12223345567998765321100
Q ss_pred -----CCCcEEEEEECCCCceeEEeeceecCCCCcceee-eeEEEcCCCeEEEEEeec--------CCCCcEEEEEeccC
Q 020796 157 -----NSWGSWMEVTVDAGRSWRKYGPIYIPNESLSVIQ-PVPFHTANRTLRVLMRSF--------NGIGRVCMSESCDG 222 (321)
Q Consensus 157 -----~~~~~~~~~S~D~G~tW~~~~~~~~~~~~~~~~~-~~~~~~~~G~l~~~~r~~--------~~~~~~~~~~S~D~ 222 (321)
....+.+..-+++..+-... ++.+... ...| |.++. .+|..++++... .....+.+++|++-
T Consensus 162 ~~~~~~~~~i~i~~l~~D~~~~~g~-~~~i~~~--~~~Egp~~~K-~~G~YYL~ys~~~~~~~~~~~~~y~v~y~~s~~~ 237 (311)
T cd09003 162 GGRWANPNTARVIKLGDDMISVDGS-AVTIDAP--YFFEASGLHK-INGTYYYSYCTNFGGRDPGKPPPGRIAYMTSKNP 237 (311)
T ss_pred CCccccCCCEEEEEeCCCceeccCC-ceEccCC--CceEeeeEEE-ECCEEEEEEeCCCCccCCCCCCceeEEEEEcCCC
Confidence 01234555444444333211 1111111 2334 45554 578988877533 11235555566554
Q ss_pred CcCCCC
Q 020796 223 GLTWSY 228 (321)
Q Consensus 223 G~tWs~ 228 (321)
---|+.
T Consensus 238 ~GP~~~ 243 (311)
T cd09003 238 MGPFTY 243 (311)
T ss_pred CCCccc
Confidence 335664
No 105
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=66.09 E-value=19 Score=30.94 Aligned_cols=58 Identities=24% Similarity=0.389 Sum_probs=36.7
Q ss_pred EEcCCCcEEEEEeCC-CCCeEEEEE-E-cCCCCCCCcce-eecccCCCceeceEEEEccCCeEEEE
Q 020796 244 VKLKDGRLLLAYNTV-SRGVLKVAL-S-KDDGDSWHDAL-TLEENLAMEFSYPAVIQASDGSVHIT 305 (321)
Q Consensus 244 ~~~~~g~~~lv~~~~-~r~~l~~~~-S-~D~G~tW~~~~-~l~~~~~~~~~yp~~~~~~dg~l~v~ 305 (321)
..++||+++.+..+. +...+.+.- + .|+..+|.+.. .+.. ..=||.++.++||++.|+
T Consensus 73 ~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~----~RWYpT~~~L~DG~vlIv 134 (243)
T PF07250_consen 73 AFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQS----GRWYPTATTLPDGRVLIV 134 (243)
T ss_pred CCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccC----CCccccceECCCCCEEEE
Confidence 456899999887553 222333332 2 25566887653 2332 235999999999998776
No 106
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=61.14 E-value=97 Score=29.38 Aligned_cols=25 Identities=20% Similarity=0.104 Sum_probs=19.8
Q ss_pred CceeEEEEecCCCCCCCCCccCCCC
Q 020796 106 KWSGCMKRSYNKGVTWSEREQLPPG 130 (321)
Q Consensus 106 ~~~~~~~~S~D~G~TWs~~~~l~~~ 130 (321)
+..+.++.|+|+|+||.+...+...
T Consensus 203 GtrGklWis~d~g~tFeK~vdl~~~ 227 (668)
T COG4946 203 GTRGKLWISSDGGKTFEKFVDLDGN 227 (668)
T ss_pred CccceEEEEecCCcceeeeeecCCC
Confidence 3456799999999999998877543
No 107
>cd08982 GH43_3 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-1,4-xylosidase (xylan 1,4-beta-xylosidase; EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanase and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially e
Probab=58.32 E-value=1.3e+02 Score=26.55 Aligned_cols=104 Identities=12% Similarity=0.104 Sum_probs=58.7
Q ss_pred ccccceEEEecCCcEEEEEecCCCCCCCCcEEEEEEeCCC-CcCCcEEccCCCCCCCCCeEEEEeCCCcEEEEEEecccc
Q 020796 26 SCHASTIVEVDKGHFLVAYFGGSCEGAPDVKIWLQTFKDG-RWQSPIIADEEPNVPMWNPVLFKLPSNGLLLFYKIGQEV 104 (321)
Q Consensus 26 ~~~~p~l~~~~~g~l~~~~~~~~~~g~~~~~i~~s~s~~G-tWs~~~~~~~~~~~~~~~p~l~~~~~G~l~l~~~~~~~~ 104 (321)
..+.|+|+... |+.+++ .... . . +.+|+|= +|+..-.+.. ....|.|.+... +|++++++...
T Consensus 2 ~~~DP~i~~~~-g~YY~~-~T~~----~--~--i~~S~DL~~W~~~g~~~~--~~~~WAP~i~~~-~g~~Y~~~~~~--- 65 (295)
T cd08982 2 EAADPVVILFK-GEYYLF-ASMS----G--G--YWHSSDLIDWDFIPTNSL--PDEGYAPAVFVY-DGTLYYTASTY--- 65 (295)
T ss_pred CCCCCeEEEEC-CEEEEE-EeCC----C--C--eEECCCcCCceECCcccC--CCCcCcCEEEEE-CCEEEEEEeCC---
Confidence 35679998775 777754 2221 1 1 3567774 9987653322 345788998765 78877765431
Q ss_pred CCceeEEEEecCC-CCCCCCCccCCCCCCCCCCCccEEccCCeEEEe
Q 020796 105 QKWSGCMKRSYNK-GVTWSEREQLPPGILGPSKNKPILLENGLLLCG 150 (321)
Q Consensus 105 ~~~~~~~~~S~D~-G~TWs~~~~l~~~~~g~~~~~~~~~~~G~~~~~ 150 (321)
...|..|+|- |--|+..... .....+-..+++..||+.++.
T Consensus 66 ---~~~v~~s~~p~gp~w~~~~~~--~~~~~IDp~vf~DdDGk~Yl~ 107 (295)
T cd08982 66 ---NSRIYKTADPLSGPWEEVDKS--FPPGLADPALFIDDDGRLYLY 107 (295)
T ss_pred ---CceEEEeCCCCCCCccccccc--cCCCccCCceEECCCCCEEEE
Confidence 1246667663 4468765211 111112333455556887765
No 108
>COG3507 XynB Beta-xylosidase [Carbohydrate transport and metabolism]
Probab=57.61 E-value=1.8e+02 Score=28.24 Aligned_cols=115 Identities=19% Similarity=0.328 Sum_probs=64.6
Q ss_pred eeeEEEcCCCeEEEEEeecCCCCcEEEEEeccCCcCCCCCcc-C------CCCC--CCC-ceeE--EEcCCCcEEEEEeC
Q 020796 190 QPVPFHTANRTLRVLMRSFNGIGRVCMSESCDGGLTWSYAKP-T------QLLN--PNS-GIDG--VKLKDGRLLLAYNT 257 (321)
Q Consensus 190 ~~~~~~~~~G~l~~~~r~~~~~~~~~~~~S~D~G~tWs~~~~-~------~~~~--~~~-~~~~--~~~~~g~~~lv~~~ 257 (321)
.|+++...+ ..++....-..-..+.+..|.| =.+|+.... + ++.+ +.+ .+.+ +...||+.+|+|.+
T Consensus 32 DpSi~rvg~-dyYia~stF~~fpGl~i~hS~D-L~nW~~v~tpl~~~~~ld~kgn~~~S~giWAPdl~y~dGkfwl~ytd 109 (549)
T COG3507 32 DPSIVRVGD-DYYIATSTFEWFPGLAIHHSRD-LVNWTLVSTPLIRTSQLDLKGNFPYSGGIWAPDLSYHDGKFWLYYTD 109 (549)
T ss_pred CCceEecCC-ceEEEcceEEEcCceeeecccc-ccCcEEecccccCcchhhhhcccCCCCceeccceecCCCcEEEEEec
Confidence 355554443 3444333222112377788988 588986542 1 1111 122 2222 44789999999966
Q ss_pred CCCC-------eEEEEEEcCCCCCCCcceeecccCCCceeceEEEEccCCeEEEEEEeC
Q 020796 258 VSRG-------VLKVALSKDDGDSWHDALTLEENLAMEFSYPAVIQASDGSVHITYTYN 309 (321)
Q Consensus 258 ~~r~-------~l~~~~S~D~G~tW~~~~~l~~~~~~~~~yp~~~~~~dg~l~v~y~~~ 309 (321)
..+. .-.+....+--.+|+.+..+... ..--|.+...+||++|++|..-
T Consensus 110 vk~~~g~~k~~~nyl~t~~s~~G~WsDpi~l~~~---~~iDPslf~D~dGr~wlv~~~w 165 (549)
T COG3507 110 VKRSGGPYKNAGNYLVTAESIDGPWSDPIKLNGS---NAIDPSLFFDKDGRKWLVNGSW 165 (549)
T ss_pred ccccCCcccccccEEEEecCCCCCcccceecCCc---CccCCceeecCCCCEEEEeccc
Confidence 4221 11222222323469998776642 1245889999999999998763
No 109
>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A.
Probab=56.62 E-value=31 Score=29.29 Aligned_cols=129 Identities=15% Similarity=0.139 Sum_probs=54.8
Q ss_pred CCCCceeEEeeceecCCCCcceeeeeEEEcCCCeEEEEEeecCCCCcEEE-EEeccCCcCCCC--CccCCCCCCCCceeE
Q 020796 167 VDAGRSWRKYGPIYIPNESLSVIQPVPFHTANRTLRVLMRSFNGIGRVCM-SESCDGGLTWSY--AKPTQLLNPNSGIDG 243 (321)
Q Consensus 167 ~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~~~r~~~~~~~~~~-~~S~D~G~tWs~--~~~~~~~~~~~~~~~ 243 (321)
.+++.+|.... ..+.....+.. ..++..+.|-|+++... +.+|. ..+.+++.+|.. ...+...+-...-.+
T Consensus 62 ~~~~~~~~~~~-~~Ig~g~W~~F-~~i~~d~~G~LYaV~~~----G~lyR~~~~~~~~~~W~~~~~~~iG~~GW~~f~~v 135 (229)
T PF14517_consen 62 SSGGNTWDSGS-KQIGDGGWNSF-KFIFFDPTGVLYAVTPD----GKLYRHPRPTNGSDNWIGGSGKKIGGTGWNDFDAV 135 (229)
T ss_dssp -STT--HHHH--EEEE-S-GGG--SEEEE-TTS-EEEEETT-----EEEEES---STT--HHH-HSEEEE-SSGGGEEEE
T ss_pred ccCcccccccC-cccccCcccce-eEEEecCCccEEEeccc----cceeeccCCCccCcchhhccceecccCCCccceEE
Confidence 57788886322 21211101111 25667788888876543 44433 346677899964 333211111111123
Q ss_pred EEcCCCcEEEEEeCCCCCeEEEE-EEcCCCCCCCcceeecccCCCceeceEEEEccCCeEEEE
Q 020796 244 VKLKDGRLLLAYNTVSRGVLKVA-LSKDDGDSWHDALTLEENLAMEFSYPAVIQASDGSVHIT 305 (321)
Q Consensus 244 ~~~~~g~~~lv~~~~~r~~l~~~-~S~D~G~tW~~~~~l~~~~~~~~~yp~~~~~~dg~l~v~ 305 (321)
...++|.|+.+-.+. .+.-. .+.+.+.+|.....+..+... -.|..+...++|.||.|
T Consensus 136 fa~~~GvLY~i~~dg---~~~~~~~p~~~~~~W~~~s~~v~~~gw-~~~~~i~~~~~g~L~~V 194 (229)
T PF14517_consen 136 FAGPNGVLYAITPDG---RLYRRYRPDGGSDRWLSGSGLVGGGGW-DSFHFIFFSPDGNLWAV 194 (229)
T ss_dssp EE-TTS-EEEEETTE----EEEE---SSTT--HHHH-EEEESSSG-GGEEEEEE-TTS-EEEE
T ss_pred EeCCCccEEEEcCCC---ceEEeCCCCCCCCccccccceeccCCc-ccceEEeeCCCCcEEEE
Confidence 445678777775432 22222 345667789876444433333 34778888899999888
No 110
>cd02110 SO_family_Moco_dimer Subgroup of sulfite oxidase (SO) family molybdopterin binding domains that contains conserved dimerization domain. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO).
Probab=54.69 E-value=1e+02 Score=27.67 Aligned_cols=18 Identities=33% Similarity=0.691 Sum_probs=15.5
Q ss_pred cEEEEEECCCCceeEEee
Q 020796 160 GSWMEVTVDAGRSWRKYG 177 (321)
Q Consensus 160 ~~~~~~S~D~G~tW~~~~ 177 (321)
-..|-+|.|+|+||+...
T Consensus 238 I~rVEvS~DgG~tW~~A~ 255 (317)
T cd02110 238 IRRVEVSLDGGRTWQEAR 255 (317)
T ss_pred EEEEEEEeCCCCcceEeE
Confidence 357899999999999875
No 111
>cd02113 bact_SoxC_Moco bacterial SoxC is a member of the sulfite oxidase (SO) family of molybdopterin binding domains. SoxC is involved in oxidation of sulfur compounds during chemolithothrophic growth. Together with SoxD, a small c-type heme containing subunit, it forms a hetrotetrameric sulfite dehydrogenase. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). Common features of all known members of this family are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=50.28 E-value=1.2e+02 Score=27.45 Aligned_cols=18 Identities=28% Similarity=0.630 Sum_probs=15.4
Q ss_pred cEEEEEECCCCceeEEee
Q 020796 160 GSWMEVTVDAGRSWRKYG 177 (321)
Q Consensus 160 ~~~~~~S~D~G~tW~~~~ 177 (321)
-..|-+|.|+|+||+...
T Consensus 240 I~rVEVS~DgG~tW~~A~ 257 (326)
T cd02113 240 IRRVDVSFDGGRTWQDAR 257 (326)
T ss_pred EEEEEEEcCCCCCceECc
Confidence 457899999999999864
No 112
>COG2152 Predicted glycosylase [Carbohydrate transport and metabolism]
Probab=48.12 E-value=2e+02 Score=25.63 Aligned_cols=115 Identities=17% Similarity=0.216 Sum_probs=67.5
Q ss_pred cEEEEEECCCCce-eEEee-ceecC-C---CCcceeeeeEEEcCCCeEEEEEeecCCCC-cEEEEEeccCCcCCCCCccC
Q 020796 160 GSWMEVTVDAGRS-WRKYG-PIYIP-N---ESLSVIQPVPFHTANRTLRVLMRSFNGIG-RVCMSESCDGGLTWSYAKPT 232 (321)
Q Consensus 160 ~~~~~~S~D~G~t-W~~~~-~~~~~-~---~~~~~~~~~~~~~~~G~l~~~~r~~~~~~-~~~~~~S~D~G~tWs~~~~~ 232 (321)
+..+.+|+|+ .+ |.... ++..+ + +..|+-.|.++..+ |+.++.+......+ ...++.+.|- .+|.....+
T Consensus 62 ~l~ia~s~dg-i~~~~~e~ep~~~P~~~~~e~~G~EDPRvt~I~-~~y~mtYTa~s~~g~~~~la~t~~f-~n~~rig~i 138 (314)
T COG2152 62 HLRIARSDDG-IGEFEIEPEPTLWPANYPYEIYGIEDPRVTKIG-GRYYMTYTAYSDKGPRLALAVTKDF-LNWERIGAI 138 (314)
T ss_pred EEEEEecccC-CCceecCCcceEecCCCchhhhcccCceEEEEC-CEEEEEEEecCCCCcccchhhhhhh-hhhhhcccc
Confidence 5678888865 44 87543 33223 2 34677678888775 78888876543223 4555667774 558876544
Q ss_pred CCCCC-CCceeEEEcCCCcEEEEEeCC-----CCCeEEEEEEcCCCCCCCcce
Q 020796 233 QLLNP-NSGIDGVKLKDGRLLLAYNTV-----SRGVLKVALSKDDGDSWHDAL 279 (321)
Q Consensus 233 ~~~~~-~~~~~~~~~~~g~~~lv~~~~-----~r~~l~~~~S~D~G~tW~~~~ 279 (321)
-.|.. ...+.-. --+|+.+|+.+.. .+.++.++.|. |...|....
T Consensus 139 ~~pdn~~~~lfP~-~~ngk~~~lhr~~~~~~~~~~niwia~S~-dl~~w~~~~ 189 (314)
T COG2152 139 FPPDNKDAALFPK-KINGKYALLHRPVLGEYGMKGNIWIAFSP-DLEHWGIHR 189 (314)
T ss_pred cCCCCCCceEeeE-EecCcEEEEEeecccccCccCceEEEEcC-CccCCCccc
Confidence 33321 1112112 2357888877643 25678888876 577886543
No 113
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=48.06 E-value=2.2e+02 Score=25.90 Aligned_cols=173 Identities=12% Similarity=0.006 Sum_probs=85.3
Q ss_pred ccEEccCCeEEEe-eecccCCCCcEEEEEECCCCceeEEeeceecCCC----C--cceeeeeEEEcCCCeEEEEEeecCC
Q 020796 138 KPILLENGLLLCG-SSVESWNSWGSWMEVTVDAGRSWRKYGPIYIPNE----S--LSVIQPVPFHTANRTLRVLMRSFNG 210 (321)
Q Consensus 138 ~~~~~~~G~~~~~-~~~~~~~~~~~~~~~S~D~G~tW~~~~~~~~~~~----~--~~~~~~~~~~~~~G~l~~~~r~~~~ 210 (321)
.+.+.++|+.++. .|. ...+.++--.++|.-|.....+.-.+. . ...+ ......++|+++++..-.
T Consensus 93 yvsvd~~g~~vf~AnY~----~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~-H~a~~tP~~~~l~v~DLG-- 165 (346)
T COG2706 93 YVSVDEDGRFVFVANYH----SGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHV-HSANFTPDGRYLVVPDLG-- 165 (346)
T ss_pred EEEECCCCCEEEEEEcc----CceEEEEEcccCCccccceeeeecCCCCCCccccCCcc-ceeeeCCCCCEEEEeecC--
Confidence 3456678986554 343 224556666677888877553332221 0 1111 234567889888776442
Q ss_pred CCcEEEEEeccCCcCCCCCccCCCCCCCCceeEEEcCCCcEEEEEeCCCCCeEEEEEEcCC-CCCCCcceeecccC---C
Q 020796 211 IGRVCMSESCDGGLTWSYAKPTQLLNPNSGIDGVKLKDGRLLLAYNTVSRGVLKVALSKDD-GDSWHDALTLEENL---A 286 (321)
Q Consensus 211 ~~~~~~~~S~D~G~tWs~~~~~~~~~~~~~~~~~~~~~g~~~lv~~~~~r~~l~~~~S~D~-G~tW~~~~~l~~~~---~ 286 (321)
..++++..-+|+..+-..+... -++. ++-+++.-+++++..+.++-.. .+.++ ..|. +..+.....+..-+ .
T Consensus 166 ~Dri~~y~~~dg~L~~~~~~~v-~~G~-GPRHi~FHpn~k~aY~v~EL~s-tV~v~-~y~~~~g~~~~lQ~i~tlP~dF~ 241 (346)
T COG2706 166 TDRIFLYDLDDGKLTPADPAEV-KPGA-GPRHIVFHPNGKYAYLVNELNS-TVDVL-EYNPAVGKFEELQTIDTLPEDFT 241 (346)
T ss_pred CceEEEEEcccCcccccccccc-CCCC-CcceEEEcCCCcEEEEEeccCC-EEEEE-EEcCCCceEEEeeeeccCccccC
Confidence 2455555445666555544433 1222 2234555567776666554211 11222 2222 23354444333211 0
Q ss_pred CceeceEEEEccCCeEEEEEEeCCCeeEEEEeCCC
Q 020796 287 MEFSYPAVIQASDGSVHITYTYNRTQIKHVVLLPN 321 (321)
Q Consensus 287 ~~~~yp~~~~~~dg~l~v~y~~~~~~i~~~~~~~~ 321 (321)
....-.++....||+++.+-.+.-+.|..-.++|+
T Consensus 242 g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~ 276 (346)
T COG2706 242 GTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPD 276 (346)
T ss_pred CCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCC
Confidence 11233356666788765555554456666666654
No 114
>cd02114 bact_SorA_Moco sulfite:cytochrome c oxidoreductase subunit A (SorA), molybdopterin binding domain. SorA is involved in oxidation of sulfur compounds during chemolithothrophic growth. Together with SorB, a small c-type heme containing subunit, it forms a hetrodimer. It is a member of the sulfite oxidase (SO) family of molybdopterin binding domains. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). Common features of all known members of this family are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=47.02 E-value=1.6e+02 Score=27.07 Aligned_cols=18 Identities=28% Similarity=0.536 Sum_probs=15.4
Q ss_pred cEEEEEECCCCceeEEee
Q 020796 160 GSWMEVTVDAGRSWRKYG 177 (321)
Q Consensus 160 ~~~~~~S~D~G~tW~~~~ 177 (321)
-..|-+|.|+|+||+...
T Consensus 290 I~rVEVS~DgG~tW~~A~ 307 (367)
T cd02114 290 IRRVDVSADGGDSWTQAT 307 (367)
T ss_pred EEEEEEEeCCCCcceEeE
Confidence 357899999999999874
No 115
>COG2152 Predicted glycosylase [Carbohydrate transport and metabolism]
Probab=44.63 E-value=2.3e+02 Score=25.28 Aligned_cols=143 Identities=20% Similarity=0.295 Sum_probs=75.0
Q ss_pred CCCCeEEEEeCCCcEEEEEEecc----ccCCc-eeEEEEecCCCCC-CCCCc--cCCC-C----CCCCCCCccEEccCCe
Q 020796 80 PMWNPVLFKLPSNGLLLFYKIGQ----EVQKW-SGCMKRSYNKGVT-WSERE--QLPP-G----ILGPSKNKPILLENGL 146 (321)
Q Consensus 80 ~~~~p~l~~~~~G~l~l~~~~~~----~~~~~-~~~~~~S~D~G~T-Ws~~~--~l~~-~----~~g~~~~~~~~~~~G~ 146 (321)
+.-||.++.. ++++++++..-. ..+.. ...+.+|+|+ .. |..-. .+.+ + ..|+--+++... +++
T Consensus 30 ~vFNpav~~~-~~~~~~l~Rv~~~yye~~~~~s~l~ia~s~dg-i~~~~~e~ep~~~P~~~~~e~~G~EDPRvt~I-~~~ 106 (314)
T COG2152 30 SVFNPAVVLV-GGELLLLYRVVEGYYEDHSSISHLRIARSDDG-IGEFEIEPEPTLWPANYPYEIYGIEDPRVTKI-GGR 106 (314)
T ss_pred EEecceeEEE-CCEEEEEEEEeccccccCccceEEEEEecccC-CCceecCCcceEecCCCchhhhcccCceEEEE-CCE
Confidence 4556777655 677888776511 11111 2347788764 44 74221 1222 1 233223344443 677
Q ss_pred EEEeeecccCCCCcEEEEEECCCCceeEEeeceecCCCCcceeeeeEEEcCCCeEEEEEeecC----CCCcEEEEEeccC
Q 020796 147 LLCGSSVESWNSWGSWMEVTVDAGRSWRKYGPIYIPNESLSVIQPVPFHTANRTLRVLMRSFN----GIGRVCMSESCDG 222 (321)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~S~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~~~r~~~----~~~~~~~~~S~D~ 222 (321)
+++.....+..+....+..+.|- .+|.+...+..+....++..|. . -+|+.+++.|... ..+++.++.|.|
T Consensus 107 y~mtYTa~s~~g~~~~la~t~~f-~n~~rig~i~~pdn~~~~lfP~--~-~ngk~~~lhr~~~~~~~~~~niwia~S~d- 181 (314)
T COG2152 107 YYMTYTAYSDKGPRLALAVTKDF-LNWERIGAIFPPDNKDAALFPK--K-INGKYALLHRPVLGEYGMKGNIWIAFSPD- 181 (314)
T ss_pred EEEEEEecCCCCcccchhhhhhh-hhhhhcccccCCCCCCceEeeE--E-ecCcEEEEEeecccccCccCceEEEEcCC-
Confidence 66652221222334556666654 4598877554332222333333 2 2578888877532 246889998866
Q ss_pred CcCCCCCc
Q 020796 223 GLTWSYAK 230 (321)
Q Consensus 223 G~tWs~~~ 230 (321)
...|.-.+
T Consensus 182 l~~w~~~~ 189 (314)
T COG2152 182 LEHWGIHR 189 (314)
T ss_pred ccCCCccc
Confidence 78887654
No 116
>PF03404 Mo-co_dimer: Mo-co oxidoreductase dimerisation domain; InterPro: IPR005066 The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cis-dithiolene moiety to molybdopterin (MPT). MoCF is ubiquitous in nature, and the pathway for MoCF biosynthesis is conserved in all three domains of life. MoCF-containing enzymes function as oxidoreductases in carbon, nitrogen, and sulphur metabolism [, ]. In Escherichia coli, biosynthesis of MoCF is a three stage process. It begins with the MoaA and MoaC conversion of GTP to the meta-stable pterin intermediate precursor Z. The second stage involves MPT synthase (MoaD and MoaE), which converts precursor Z to MPT; MoeB is involved in the recycling of MPT synthase. The final step in MoCF synthesis is the attachment of mononuclear Mo to MPT, a process that requires MoeA and which is enhanced by MogA in an Mg2 ATP-dependent manner []. MoCF is the active co-factor in eukaryotic and some prokaryotic molybdo-enzymes, but the majority of bacterial enzymes requiring MoCF, need a modification of MTP for it to be active; MobA is involved in the attachment of a nucleotide monophosphate to MPT resulting in the MGD co-factor, the active co-factor for most prokaryotic molybdo-enzymes. Bacterial two-hybrid studies have revealed the close interactions between MoeA, MogA, and MobA in the synthesis of MoCF []. Moreover the close functional association of MoeA and MogA in the synthesis of MoCF is supported by fact that the known eukaryotic homologues to MoeA and MogA exist as fusion proteins: CNX1 (Q39054 from SWISSPROT) of Arabidopsis thaliana (Mouse-ear cress), mammalian Gephryin (e.g. Q9NQX3 from SWISSPROT) and Drosophila melanogaster (Fruit fly) Cinnamon (P39205 from SWISSPROT) []. This domain is found in molybdopterin cofactor oxidoreductases, such as in the C-terminal of Mo-containing sulphite oxidase, which catalyses the conversion of sulphite to sulphate, the terminal step in the oxidative degradation of cysteine and methionine []. This domain is involved in dimer formation, and has an Ig-fold structure [].; GO: 0016491 oxidoreductase activity, 0030151 molybdenum ion binding, 0055114 oxidation-reduction process; PDB: 2C9X_A 2CA3_A 2BLF_A 2CA4_A 2BPB_A 2XTS_C 2BII_A 2BIH_A 1OGP_A 2A9A_B ....
Probab=39.29 E-value=1.6e+02 Score=22.54 Aligned_cols=26 Identities=31% Similarity=0.650 Sum_probs=18.1
Q ss_pred CCCeEEEEEEcCCCCCCCcceeeccc
Q 020796 259 SRGVLKVALSKDDGDSWHDALTLEEN 284 (321)
Q Consensus 259 ~r~~l~~~~S~D~G~tW~~~~~l~~~ 284 (321)
.|....+=+|.|+|+||....+....
T Consensus 40 g~~I~rVEVS~DgG~tW~~A~l~~~~ 65 (131)
T PF03404_consen 40 GRGIARVEVSTDGGKTWQEATLDGPE 65 (131)
T ss_dssp T--EEEEEEESSTTSSEEE-EEESTS
T ss_pred CcceEEEEEEeCCCCCcEEeEeccCC
Confidence 33555677899999999998776653
No 117
>PLN00177 sulfite oxidase; Provisional
Probab=38.29 E-value=1e+02 Score=28.70 Aligned_cols=18 Identities=22% Similarity=0.630 Sum_probs=15.3
Q ss_pred cEEEEEECCCCceeEEee
Q 020796 160 GSWMEVTVDAGRSWRKYG 177 (321)
Q Consensus 160 ~~~~~~S~D~G~tW~~~~ 177 (321)
-..|-+|.|+|+||+...
T Consensus 298 I~rVEVS~DgG~tW~~A~ 315 (393)
T PLN00177 298 IERVDISVDGGKTWVEAS 315 (393)
T ss_pred EEEEEEEcCCCCCceeee
Confidence 357899999999999864
No 118
>PHA02579 7 baseplate wedge subunit; Provisional
Probab=37.43 E-value=53 Score=32.93 Aligned_cols=53 Identities=23% Similarity=0.197 Sum_probs=31.0
Q ss_pred cCCCeEEEEEeecCCCCcEEEEEeccCCcCCCCCccCC--CCCCCCceeEEEcCCCcEEEE
Q 020796 196 TANRTLRVLMRSFNGIGRVCMSESCDGGLTWSYAKPTQ--LLNPNSGIDGVKLKDGRLLLA 254 (321)
Q Consensus 196 ~~~G~l~~~~r~~~~~~~~~~~~S~D~G~tWs~~~~~~--~~~~~~~~~~~~~~~g~~~lv 254 (321)
-.+|-|+++=|-+ .+.-+|.|+|+||..-...+ +..|-++...-+.. ..-+++
T Consensus 194 ~~d~vLYlFERfQ-----~~aKVSNDkGQtW~yyka~N~RvG~Pvsrtv~yQs~-tttYvL 248 (1030)
T PHA02579 194 ESDGVLYLFERFQ-----PMAKVSNDKGQTWKYYKAFNDRVGNPVSRTVYYQSN-TTTYVL 248 (1030)
T ss_pred eeCCEEEehhhhc-----cceeeecCCCcceeeehhhccccCCcchheEEEecC-ceEEEe
Confidence 3467777765543 35578999999999865443 33444444334433 333444
No 119
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=36.99 E-value=3.2e+02 Score=24.65 Aligned_cols=166 Identities=11% Similarity=0.082 Sum_probs=71.2
Q ss_pred cEEccCCeEEEeeecccCCCCcEEEEEECCCCceeEEeeceecCCCCcceeeeeEEEcCCCeEEEEEeecCCCCcEEEEE
Q 020796 139 PILLENGLLLCGSSVESWNSWGSWMEVTVDAGRSWRKYGPIYIPNESLSVIQPVPFHTANRTLRVLMRSFNGIGRVCMSE 218 (321)
Q Consensus 139 ~~~~~~G~~~~~~~~~~~~~~~~~~~~S~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~~~r~~~~~~~~~~~~ 218 (321)
+...++|+.++.... ....+.++.-++++...+....+..+. ..|.. .++..++|+++-+.... .+.+....
T Consensus 149 v~~~pdg~~v~v~dl---G~D~v~~~~~~~~~~~l~~~~~~~~~~-G~GPR--h~~f~pdg~~~Yv~~e~--s~~v~v~~ 220 (345)
T PF10282_consen 149 VVFSPDGRFVYVPDL---GADRVYVYDIDDDTGKLTPVDSIKVPP-GSGPR--HLAFSPDGKYAYVVNEL--SNTVSVFD 220 (345)
T ss_dssp EEE-TTSSEEEEEET---TTTEEEEEEE-TTS-TEEEEEEEECST-TSSEE--EEEE-TTSSEEEEEETT--TTEEEEEE
T ss_pred EEECCCCCEEEEEec---CCCEEEEEEEeCCCceEEEeecccccc-CCCCc--EEEEcCCcCEEEEecCC--CCcEEEEe
Confidence 445678886554332 234555655555543455543333221 12322 23445677643332221 24443332
Q ss_pred ec-cCCcCCCCCccCC-CCC-C---CCceeEEEcCCCcEEEEEeCCCCCeEEEEEE-cCCCCCCCcceeecccCCCceec
Q 020796 219 SC-DGGLTWSYAKPTQ-LLN-P---NSGIDGVKLKDGRLLLAYNTVSRGVLKVALS-KDDGDSWHDALTLEENLAMEFSY 291 (321)
Q Consensus 219 S~-D~G~tWs~~~~~~-~~~-~---~~~~~~~~~~~g~~~lv~~~~~r~~l~~~~S-~D~G~tW~~~~~l~~~~~~~~~y 291 (321)
-. ..| +++..+.+. +|. . .....+...+||+.+.+.+.. ...+.+.-- .++| +.+....+..+ -.+
T Consensus 221 ~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~-~~sI~vf~~d~~~g-~l~~~~~~~~~----G~~ 293 (345)
T PF10282_consen 221 YDPSDG-SLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRG-SNSISVFDLDPATG-TLTLVQTVPTG----GKF 293 (345)
T ss_dssp EETTTT-EEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECT-TTEEEEEEECTTTT-TEEEEEEEEES----SSS
T ss_pred ecccCC-ceeEEEEeeeccccccccCCceeEEEecCCCEEEEEecc-CCEEEEEEEecCCC-ceEEEEEEeCC----CCC
Confidence 22 233 444332211 111 1 122334445689988887643 233333322 2223 23333333321 134
Q ss_pred eE-EEEccCCeEEEEEEeCCCeeEEEEeC
Q 020796 292 PA-VIQASDGSVHITYTYNRTQIKHVVLL 319 (321)
Q Consensus 292 p~-~~~~~dg~l~v~y~~~~~~i~~~~~~ 319 (321)
|+ +...+||..+++=.++.+.|....++
T Consensus 294 Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 294 PRHFAFSPDGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp EEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred ccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence 65 44457777666655566666666654
No 120
>cd02111 eukary_SO_Moco molybdopterin binding domain of sulfite oxidase (SO). SO catalyzes the terminal reaction in the oxidative degradation of the sulfur-containing amino acids cysteine and methionine. Common features of all known members of the sulfite oxidase (SO) family of molybdopterin binding domains are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=35.26 E-value=1.1e+02 Score=28.19 Aligned_cols=18 Identities=28% Similarity=0.632 Sum_probs=15.4
Q ss_pred cEEEEEECCCCceeEEee
Q 020796 160 GSWMEVTVDAGRSWRKYG 177 (321)
Q Consensus 160 ~~~~~~S~D~G~tW~~~~ 177 (321)
-..|-+|.|+|+||+...
T Consensus 278 I~rVEVS~DgG~tW~~A~ 295 (365)
T cd02111 278 IVRVDVSLDGGRTWKVAE 295 (365)
T ss_pred EEEEEEECCCCCcceeCC
Confidence 357899999999999864
No 121
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=34.04 E-value=47 Score=16.95 Aligned_cols=13 Identities=8% Similarity=0.174 Sum_probs=9.1
Q ss_pred EEEEeCCCcEEEE
Q 020796 85 VLFKLPSNGLLLF 97 (321)
Q Consensus 85 ~l~~~~~G~l~l~ 97 (321)
+++.+++|.||+.
T Consensus 9 ~i~~D~~G~lWig 21 (24)
T PF07494_consen 9 SIYEDSDGNLWIG 21 (24)
T ss_dssp EEEE-TTSCEEEE
T ss_pred EEEEcCCcCEEEE
Confidence 4678889998863
No 122
>KOG0228 consensus Beta-fructofuranosidase (invertase) [Carbohydrate transport and metabolism]
Probab=33.07 E-value=4.6e+02 Score=25.36 Aligned_cols=138 Identities=17% Similarity=0.170 Sum_probs=70.9
Q ss_pred CCCcEEEEEEeccccCCceeE---EEEecCCCCCCCCCcc-CCC----CCCCCCCCccEEccCCeEEEe-----------
Q 020796 90 PSNGLLLFYKIGQEVQKWSGC---MKRSYNKGVTWSEREQ-LPP----GILGPSKNKPILLENGLLLCG----------- 150 (321)
Q Consensus 90 ~~G~l~l~~~~~~~~~~~~~~---~~~S~D~G~TWs~~~~-l~~----~~~g~~~~~~~~~~~G~~~~~----------- 150 (321)
.+|.-+|||+..+....|... -..|+| =..|....+ +.| ++.|+..++++++.+|+-.+.
T Consensus 68 ykG~yHLFyQyNP~gavwg~ivWGHavSkD-LinW~~lp~Ai~Ps~~~ding~wSGSati~~~~~~vilytg~d~~~rqV 146 (571)
T KOG0228|consen 68 YKGKYHLFYQYNPKGAVWGNIVWGHAVSKD-LINWEALPPAIAPSEWFDINGCWSGSATIDPNNSPVILYTGIDPNNRQV 146 (571)
T ss_pred cCcEEEEEEecCCCCceeeeeEeeeecchh-hccccccCcccCCCCccccCccccceEEEccCCCeEEEecccCcCceEE
Confidence 378888998864433333322 245554 467864332 222 234556666666666553221
Q ss_pred -eecccCC-CCcEEEEEECCCCceeEEeeceecCCCCcceeeeeEE-EcCCCeEEEEEeec-CCCCcEEEEEeccCCcCC
Q 020796 151 -SSVESWN-SWGSWMEVTVDAGRSWRKYGPIYIPNESLSVIQPVPF-HTANRTLRVLMRSF-NGIGRVCMSESCDGGLTW 226 (321)
Q Consensus 151 -~~~~~~~-~~~~~~~~S~D~G~tW~~~~~~~~~~~~~~~~~~~~~-~~~~G~l~~~~r~~-~~~~~~~~~~S~D~G~tW 226 (321)
.+.+.++ ...-.+..|.|+|.+...+..+.--+ ...+..|..+ ..++|+..|+.-.. ...+.+++..|.| =++|
T Consensus 147 qn~a~p~d~sdp~l~~w~k~~gnp~~~p~~V~~in-~s~FRDPttaW~~~dgkWrm~vgsk~~q~g~a~~Y~S~D-f~~W 224 (571)
T KOG0228|consen 147 QNYAYPKDVSDPQLIAWSKDGGNPFMKPDKVLGIN-SSQFRDPTTAWFGQDGKWRMTVGSKIKQRGKAIIYSSDD-FKHW 224 (571)
T ss_pred EEEeccCCCCchhhheeecCCCceeeccccccCCC-hhhccCCceeeecCCCcEEEEEEeecCccceEEEEeccc-hhhh
Confidence 1111111 12345677899999888775432111 1123345444 33578765554332 2234455555555 6899
Q ss_pred CCCc
Q 020796 227 SYAK 230 (321)
Q Consensus 227 s~~~ 230 (321)
++..
T Consensus 225 ~k~~ 228 (571)
T KOG0228|consen 225 TKSS 228 (571)
T ss_pred hccc
Confidence 8754
No 123
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=30.54 E-value=3.3e+02 Score=22.89 Aligned_cols=107 Identities=21% Similarity=0.158 Sum_probs=47.7
Q ss_pred eEEEcCCCeEEEEEeecCC---C--CcEEEEEeccCCcCCCCCccCCCCCCCCceeEEEcCCCcEEEEEeCCCCCeEEEE
Q 020796 192 VPFHTANRTLRVLMRSFNG---I--GRVCMSESCDGGLTWSYAKPTQLLNPNSGIDGVKLKDGRLLLAYNTVSRGVLKVA 266 (321)
Q Consensus 192 ~~~~~~~G~l~~~~r~~~~---~--~~~~~~~S~D~G~tWs~~~~~~~~~~~~~~~~~~~~~g~~~lv~~~~~r~~l~~~ 266 (321)
.++..++|++++.-..... . +.++ ..+.| |+ .+... ..+..|+ .+...++++.+++.+.. ...+..+
T Consensus 90 D~~vd~~G~ly~t~~~~~~~~~~~~g~v~-~~~~~-~~-~~~~~-~~~~~pN---Gi~~s~dg~~lyv~ds~-~~~i~~~ 161 (246)
T PF08450_consen 90 DVAVDPDGNLYVTDSGGGGASGIDPGSVY-RIDPD-GK-VTVVA-DGLGFPN---GIAFSPDGKTLYVADSF-NGRIWRF 161 (246)
T ss_dssp EEEE-TTS-EEEEEECCBCTTCGGSEEEE-EEETT-SE-EEEEE-EEESSEE---EEEEETTSSEEEEEETT-TTEEEEE
T ss_pred eEEEcCCCCEEEEecCCCccccccccceE-EECCC-Ce-EEEEe-cCccccc---ceEECCcchheeecccc-cceeEEE
Confidence 5677789997765432211 1 3354 33444 33 11111 1111121 23344677766554432 3333322
Q ss_pred EEcCCCCCCCcceeecccCCCceeceE-EEEccCCeEEEEEE
Q 020796 267 LSKDDGDSWHDALTLEENLAMEFSYPA-VIQASDGSVHITYT 307 (321)
Q Consensus 267 ~S~D~G~tW~~~~~l~~~~~~~~~yp~-~~~~~dg~l~v~y~ 307 (321)
--..++..+.....+.+.+. ..++|. +....+|.|||+..
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~-~~g~pDG~~vD~~G~l~va~~ 202 (246)
T PF08450_consen 162 DLDADGGELSNRRVFIDFPG-GPGYPDGLAVDSDGNLWVADW 202 (246)
T ss_dssp EEETTTCCEEEEEEEEE-SS-SSCEEEEEEEBTTS-EEEEEE
T ss_pred eccccccceeeeeeEEEcCC-CCcCCCcceEcCCCCEEEEEc
Confidence 22223444665555533221 225787 55667899998844
No 124
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=30.33 E-value=4.1e+02 Score=23.92 Aligned_cols=124 Identities=15% Similarity=0.102 Sum_probs=53.0
Q ss_pred eeEEEcCCCeEEEEEeecCCCCcEEEEEeccCCcCCCCCccCCCCCCCCceeEEEcCCCcEEEEEeCCCCCeEEE-EEEc
Q 020796 191 PVPFHTANRTLRVLMRSFNGIGRVCMSESCDGGLTWSYAKPTQLLNPNSGIDGVKLKDGRLLLAYNTVSRGVLKV-ALSK 269 (321)
Q Consensus 191 ~~~~~~~~G~l~~~~r~~~~~~~~~~~~S~D~G~tWs~~~~~~~~~~~~~~~~~~~~~g~~~lv~~~~~r~~l~~-~~S~ 269 (321)
+.+...++|+.+.+... +...+++..-.+.+...++...+.++...++-+++..++|+.+.|-++. ...+.+ .+..
T Consensus 147 H~v~~~pdg~~v~v~dl--G~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~-s~~v~v~~~~~ 223 (345)
T PF10282_consen 147 HQVVFSPDGRFVYVPDL--GADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNEL-SNTVSVFDYDP 223 (345)
T ss_dssp EEEEE-TTSSEEEEEET--TTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETT-TTEEEEEEEET
T ss_pred eeEEECCCCCEEEEEec--CCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCC-CCcEEEEeecc
Confidence 35666788887655432 2345555444333333443222233332334456666777766665543 233332 2332
Q ss_pred CCCCCCCcceeecccC--CCceeceE-EEEccCCeEEEEEEeCCCeeEEEEe
Q 020796 270 DDGDSWHDALTLEENL--AMEFSYPA-VIQASDGSVHITYTYNRTQIKHVVL 318 (321)
Q Consensus 270 D~G~tW~~~~~l~~~~--~~~~~yp~-~~~~~dg~l~v~y~~~~~~i~~~~~ 318 (321)
..| .+.....+..-+ ......|. +...+||+...+=.+..+.|-...+
T Consensus 224 ~~g-~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~ 274 (345)
T PF10282_consen 224 SDG-SLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDL 274 (345)
T ss_dssp TTT-EEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEE
T ss_pred cCC-ceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEE
Confidence 234 344433332211 01111343 5556777643333333445555544
No 125
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=28.84 E-value=2.4e+02 Score=25.36 Aligned_cols=109 Identities=17% Similarity=0.119 Sum_probs=0.0
Q ss_pred eEEEcCCCeEEEEEeecCCCCcEEEEEeccCCc--CCCCCccCCCCCCCCceeEEEcCC----CcEEEEEeCC------C
Q 020796 192 VPFHTANRTLRVLMRSFNGIGRVCMSESCDGGL--TWSYAKPTQLLNPNSGIDGVKLKD----GRLLLAYNTV------S 259 (321)
Q Consensus 192 ~~~~~~~G~l~~~~r~~~~~~~~~~~~S~D~G~--tWs~~~~~~~~~~~~~~~~~~~~~----g~~~lv~~~~------~ 259 (321)
+++..+||++++.-|. +.|.+.. .|+-. .-.....+.......-+.++..++ +.+++++... .
T Consensus 6 ~~a~~pdG~l~v~e~~----G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 6 SMAFLPDGRLLVAERS----GRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp EEEEETTSCEEEEETT----TEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred EEEEeCCCcEEEEeCC----ceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Q ss_pred CCeEEEEEEcCCCCCCCcceeecccCCC----ceeceEEEEccCCeEEEE
Q 020796 260 RGVLKVALSKDDGDSWHDALTLEENLAM----EFSYPAVIQASDGSVHIT 305 (321)
Q Consensus 260 r~~l~~~~S~D~G~tW~~~~~l~~~~~~----~~~yp~~~~~~dg~l~v~ 305 (321)
+..+.-+.-.++..+......|-..... ...--.|.+.+||.|||.
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs 130 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVS 130 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEE
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEE
No 126
>KOG1843 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.34 E-value=1.2e+02 Score=28.02 Aligned_cols=23 Identities=26% Similarity=0.520 Sum_probs=18.4
Q ss_pred cEEEEEEeCCCCcCCcEEccCCC
Q 020796 55 VKIWLQTFKDGRWQSPIIADEEP 77 (321)
Q Consensus 55 ~~i~~s~s~~GtWs~~~~~~~~~ 77 (321)
..+.+.+..+|||+.|+.+...+
T Consensus 67 sgviv~~l~dGtwsapsa~~~~g 89 (473)
T KOG1843|consen 67 SGVIVGYLKDGTWSAPSAIAEAG 89 (473)
T ss_pred CceeeeecCCCCcCcchhhhhcc
Confidence 34778899999999999886544
No 127
>PF08950 DUF1861: Protein of unknown function (DUF1861); InterPro: IPR015045 This hypothetical protein, found in bacteria and in the eukaryote Leishmania, has no known function. ; PDB: 2B4W_A.
Probab=25.78 E-value=4.6e+02 Score=23.13 Aligned_cols=80 Identities=14% Similarity=0.232 Sum_probs=37.0
Q ss_pred eeeeEEecCCCCCCCccccceEEEecCCcEEEEEecCCCCCCCCcEEEEEEeC-CCCcCCcEEccCCCCCCCCCeEEEEe
Q 020796 11 VAEEFTFPANSAPFKSCHASTIVEVDKGHFLVAYFGGSCEGAPDVKIWLQTFK-DGRWQSPIIADEEPNVPMWNPVLFKL 89 (321)
Q Consensus 11 ~~~~~~f~~~~~~~~~~~~p~l~~~~~g~l~~~~~~~~~~g~~~~~i~~s~s~-~GtWs~~~~~~~~~~~~~~~p~l~~~ 89 (321)
..+.+.|+-.. .+-.+.+.+.+... |+.+.+=.-+.++......+++=.-. +++|+. +.+.+.....+|-+...
T Consensus 12 ~~~kL~F~GV~-~~DVYNisaPF~~~-Gk~~IaGRVE~Rdswe~S~V~fF~e~g~~~w~~---v~~~~~~~LqDPF~t~I 86 (298)
T PF08950_consen 12 ESEKLTFKGVG-GKDVYNISAPFEYN-GKTVIAGRVEKRDSWEHSEVRFFEETGKDEWTP---VEGAPVFQLQDPFVTRI 86 (298)
T ss_dssp EEEE-EEES-T-T-EEES----EEET-TEEEEEEEEE-TT-SS--EEEEEEEEETTEEEE----TT---BS-EEEEEEEE
T ss_pred ceeEEEEecCC-CceeeEEecceeEC-CEEEEEeeeecCCchhccEEEEEEEeCCCeEEE---CCCcceEEecCcceeeE
Confidence 34566777653 44555566666555 77666533333333344455554444 568875 44445566778876554
Q ss_pred CCCcEEE
Q 020796 90 PSNGLLL 96 (321)
Q Consensus 90 ~~G~l~l 96 (321)
+|+|++
T Consensus 87 -~gelif 92 (298)
T PF08950_consen 87 -QGELIF 92 (298)
T ss_dssp -TTEEEE
T ss_pred -CCEEEE
Confidence 777765
No 128
>cd02112 eukary_NR_Moco molybdopterin binding domain of eukaryotic nitrate reductase (NR). Assimilatory NRs catalyze the reduction of nitrate to nitrite which is subsequently converted to NH4+ by nitrite reductase. Eukaryotic assimilatory nitrate reductases are cytosolic homodimeric enzymes with three prosthetic groups, flavin adenine dinucleotide (FAD), cytochrome b557, and Mo cofactor, which are located in three functional domains. Common features of all known members of the sulfite oxidase (SO) family of molybdopterin binding domains are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=22.73 E-value=62 Score=30.03 Aligned_cols=15 Identities=40% Similarity=0.944 Sum_probs=0.0
Q ss_pred EEEEEECCCCceeEE
Q 020796 161 SWMEVTVDAGRSWRK 175 (321)
Q Consensus 161 ~~~~~S~D~G~tW~~ 175 (321)
..|-+|.|+|+||+.
T Consensus 303 ~rVeVS~DgG~tW~~ 317 (386)
T cd02112 303 TRVEVSLDDGKSWKL 317 (386)
T ss_pred EEEEEEcCCCCCcee
No 129
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=22.20 E-value=3.4e+02 Score=20.27 Aligned_cols=71 Identities=14% Similarity=0.222 Sum_probs=39.1
Q ss_pred CccccceEEEecCCcEEEEEecCCCCCCCCcEEEEEEeCCC-CcCCcEEccCCC-CC-CC-CCeEE-EEeCCCcEEEE
Q 020796 25 KSCHASTIVEVDKGHFLVAYFGGSCEGAPDVKIWLQTFKDG-RWQSPIIADEEP-NV-PM-WNPVL-FKLPSNGLLLF 97 (321)
Q Consensus 25 ~~~~~p~l~~~~~g~l~~~~~~~~~~g~~~~~i~~s~s~~G-tWs~~~~~~~~~-~~-~~-~~p~l-~~~~~G~l~l~ 97 (321)
.......|+... |+|.++-...... ...+.|++-.+.+. .|+....+.+.. .. .. ....+ ....+|+|.+.
T Consensus 43 ~~~~~~~L~~~~-G~L~~v~~~~~~~-~~~~~iWvLeD~~k~~Wsk~~~~lp~~~~~~~~~~~~~~~g~~~~Geiv~~ 118 (129)
T PF08268_consen 43 SSDCSSTLIEYK-GKLALVSYNDQGE-PDSIDIWVLEDYEKQEWSKKHIVLPPSWQHFVHDCDFSFVGVTDTGEIVFA 118 (129)
T ss_pred cccCccEEEEeC-CeEEEEEecCCCC-cceEEEEEeeccccceEEEEEEECChHHhcccCCcEEEEEEEcCCCEEEEE
Confidence 444556788776 8888875443221 23467888776654 999765543321 11 11 12222 23467887654
No 130
>COG2930 Uncharacterized conserved protein [Function unknown]
Probab=21.33 E-value=58 Score=26.81 Aligned_cols=20 Identities=15% Similarity=0.508 Sum_probs=17.0
Q ss_pred cEEEEEEeCCCCcCCcEEcc
Q 020796 55 VKIWLQTFKDGRWQSPIIAD 74 (321)
Q Consensus 55 ~~i~~s~s~~GtWs~~~~~~ 74 (321)
..++++++.++||+.|..+.
T Consensus 75 qGvl~~r~~~nTWs~p~~v~ 94 (227)
T COG2930 75 QGVLVARLPDNTWSAPSFVK 94 (227)
T ss_pred ceEEEecCCCCCcccchhhh
Confidence 45889999999999998765
Done!