BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020797
(321 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1E7S|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase K140r
Length = 321
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 71/305 (23%), Positives = 113/305 (37%), Gaps = 55/305 (18%)
Query: 30 APIAQQLPGESDQEFAEFSSKILHLKGDRKDYDFVKSSLSAKGFDVVYDINGREADEVEP 89
+ I +QL D E + L+L R +DF S + + + G A+ P
Sbjct: 17 SAIRRQLEQRGDVELVLRTRDELNLLDSRAVHDFFASERIDQVYLAAAKVGGIVANNTYP 76
Query: 90 -------------ILDAL--PNLEQFIYCSSAGVYLKSDLLPHCETD----TVDPK---- 126
I+ A ++ + ++ S+ +Y K P E++ T++P
Sbjct: 77 ADFIYQNMMIESNIIHAAHQNDVNKLLFLGSSCIYPKLAKQPMAESELLQGTLEPTNEPY 136
Query: 127 --SRHKGKLNTESVLESKGVNWTSLRPVYIYGPL-NYNPVEEWF-------FHRLKAGRP 176
+R G ES G ++ S+ P +YGP N++P FH A
Sbjct: 137 AIARIAGIKLCESYNRQYGRDYRSVMPTNLYGPHDNFHPSNSHVIPALLRRFHEATAQSA 196
Query: 177 --IPIPGSGIQVTQLGHVKDLARAFVQV--------LGNEKASRQVFNISGEKYVTFDGL 226
+ + GSG + + HV D+A A + V L N + N+ T L
Sbjct: 197 PDVVVWGSGTPMREFLHVDDMAAASIHVMELAHEVWLENTQPMLSHINVGTGVDCTIREL 256
Query: 227 ARACAKAAGFPEPELVHYNPKEFDFGKKKAFPFRDQHFFASVEKAKHVLGWKPEFDLVEG 286
A+ AK G+ + FD K P + V + H LGW E L G
Sbjct: 257 AQTIAKVVGYKGRVV-------FDASKPDGTPRK----LLDVTRL-HQLGWYHEISLEAG 304
Query: 287 LADSY 291
LA +Y
Sbjct: 305 LASTY 309
>pdb|4EF7|A Chain A, Udp-Xylose Synthase
pdb|4EF7|B Chain B, Udp-Xylose Synthase
pdb|4GLL|A Chain A, Crystal Structure Of Human Udp-Xylose Synthase.
pdb|4GLL|B Chain B, Crystal Structure Of Human Udp-Xylose Synthase
Length = 337
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 70/340 (20%), Positives = 136/340 (40%), Gaps = 54/340 (15%)
Query: 2 GGTRFIGVFLSRLLVKEGHQVTL---FTRGKAPIAQQLPGESDQEFAEFS---------S 49
GG F+G L+ L+ +GH+VT+ F G+ + G + E
Sbjct: 12 GGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPLYIEVD 71
Query: 50 KILHLKGDRKDYDFVKSSLSAKGFDVVYDINGREADEVEPILDALPNL-EQFIYCSSAGV 108
+I HL +++ + + + + +N +L + + + S++ V
Sbjct: 72 QIYHLASPASPPNYMYNPIKTLKTNTIGTLN---------MLGLAKRVGARLLLASTSEV 122
Query: 109 YLKSDLLPHCE-----TDTVDPKSRH-KGKLNTESV----LESKGVNWTSLRPVYIYGP- 157
Y ++ P E + + P++ + +GK E++ ++ +GV R +GP
Sbjct: 123 YGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPR 182
Query: 158 --LNYNPVEEWFFHRLKAGRPIPIPGSGIQVTQLGHVKDLARAFVQVLGNEKASRQVFNI 215
+N V F + G P+ + GSG Q +V DL V ++ + +S N+
Sbjct: 183 MHMNDGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSNVSSP--VNL 240
Query: 216 SGEKYVTFDGLARACAKAAGFPEPELVHYNPKEFDFGKKKAFPFRDQHFFASVEKAKHVL 275
+ T A+ G E+ + + D K+K ++KAK +L
Sbjct: 241 GNPEEHTILEFAQLIKNLVGSGS-EIQFLSEAQDDPQKRKP----------DIKKAKLML 289
Query: 276 GWKPEFDLVEGLADSYNLDFGRGTYRKEADFSTDDMILGK 315
GW+P L EGL + + +RKE ++ ++ + K
Sbjct: 290 GWEPVVPLEEGLNKAIHY------FRKELEYQANNQYIPK 323
>pdb|1E6U|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase
Length = 321
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 70/305 (22%), Positives = 114/305 (37%), Gaps = 55/305 (18%)
Query: 30 APIAQQLPGESDQEFAEFSSKILHLKGDRKDYDFVKSSLSAKGFDVVYDINGREADEVEP 89
+ I +QL D E + L+L R +DF S + + + G A+ P
Sbjct: 17 SAIRRQLEQRGDVELVLRTRDELNLLDSRAVHDFFASERIDQVYLAAAKVGGIVANNTYP 76
Query: 90 -------------ILDAL--PNLEQFIYCSSAGVYLKSDLLPHCETD----TVDPK---- 126
I+ A ++ + ++ S+ +Y K P E++ T++P
Sbjct: 77 ADFIYQNMMIESNIIHAAHQNDVNKLLFLGSSCIYPKLAKQPMAESELLQGTLEPTNEPY 136
Query: 127 --SRHKGKLNTESVLESKGVNWTSLRPVYIYGPL-NYNPVEEWF-------FHRLKAGRP 176
++ G ES G ++ S+ P +YGP N++P FH A +
Sbjct: 137 AIAKIAGIKLCESYNRQYGRDYRSVMPTNLYGPHDNFHPSNSHVIPALLRRFHEATAQKA 196
Query: 177 --IPIPGSGIQVTQLGHVKDLARAFVQV--------LGNEKASRQVFNISGEKYVTFDGL 226
+ + GSG + + HV D+A A + V L N + N+ T L
Sbjct: 197 PDVVVWGSGTPMREFLHVDDMAAASIHVMELAHEVWLENTQPMLSHINVGTGVDCTIREL 256
Query: 227 ARACAKAAGFPEPELVHYNPKEFDFGKKKAFPFRDQHFFASVEKAKHVLGWKPEFDLVEG 286
A+ AK G+ + FD K P + V + H LGW E L G
Sbjct: 257 AQTIAKVVGYKGRVV-------FDASKPDGTPRK----LLDVTRL-HQLGWYHEISLEAG 304
Query: 287 LADSY 291
LA +Y
Sbjct: 305 LASTY 309
>pdb|1GY8|A Chain A, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|B Chain B, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|C Chain C, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|D Chain D, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|2CNB|A Chain A, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|B Chain B, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|C Chain C, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|D Chain D, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
Length = 397
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 56/125 (44%), Gaps = 20/125 (16%)
Query: 174 GRPIPIPGSGIQVTQLGHVKDLARA------FVQVLGNEKASR--QVFNISGEKYVTFDG 225
G P P G V HV DLA A +V+ LG S+ VFN+ + +
Sbjct: 258 GTDYPTP-DGTCVRDYVHVCDLASAHILALDYVEKLGPNDKSKYFSVFNLGTSRGYSVRE 316
Query: 226 LARACAKAAGFPEPELVHYNPKEFDFGKKKAFPFRDQHFFASVEKAKHVLGWKPEFDLVE 285
+ K G P P + G+++ P + A+ +KA+ VLGWKP++D +E
Sbjct: 317 VIEVARKTTGHPIPVR--------ECGRREGDP---AYLVAASDKAREVLGWKPKYDTLE 365
Query: 286 GLADS 290
+ ++
Sbjct: 366 AIMET 370
>pdb|1BWS|A Chain A, Crystal Structure Of Gdp-4-Keto-6-Deoxy-D-Mannose
EpimeraseREDUCTASE From Escherichia Coli A Key Enzyme In
The Biosynthesis Of Gdp-L- Fucose
Length = 321
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 70/305 (22%), Positives = 113/305 (37%), Gaps = 55/305 (18%)
Query: 30 APIAQQLPGESDQEFAEFSSKILHLKGDRKDYDFVKSSLSAKGFDVVYDINGREADEVEP 89
+ I +QL D E + L+L R +DF S + + + G A+ P
Sbjct: 17 SAIRRQLEQRGDVELVLRTRDELNLLDSRAVHDFFASERIDQVYLAAAKVGGIVANNTYP 76
Query: 90 -------------ILDAL--PNLEQFIYCSSAGVYLKSDLLPHCETD----TVDPK---- 126
I+ A ++ + ++ S+ +Y K P E++ T++P
Sbjct: 77 ADFIYQNMMIESNIIHAAHQNDVNKLLFLGSSCIYPKLAKQPMAESELLQGTLEPTNEPY 136
Query: 127 --SRHKGKLNTESVLESKGVNWTSLRPVYIYGPL-NYNPVEEWF-------FHRLKAGRP 176
++ G ES G ++ S+ P +YGP N++P FH A
Sbjct: 137 AIAKIAGIKLCESYNRQYGRDYRSVMPTNLYGPHDNFHPSNSHVIPALLRRFHEATAQNA 196
Query: 177 --IPIPGSGIQVTQLGHVKDLARAFVQV--------LGNEKASRQVFNISGEKYVTFDGL 226
+ + GSG + + HV D+A A + V L N + N+ T L
Sbjct: 197 PDVVVWGSGTPMREFLHVDDMAAASIHVMELAHEVWLENTQPMLSHINVGTGVDCTIRDL 256
Query: 227 ARACAKAAGFPEPELVHYNPKEFDFGKKKAFPFRDQHFFASVEKAKHVLGWKPEFDLVEG 286
A+ AK G+ + FD K P + V + H LGW E L G
Sbjct: 257 AQTIAKVVGYKGRVV-------FDASKPDGTPRK----LLDVTRL-HQLGWYHEISLEAG 304
Query: 287 LADSY 291
LA +Y
Sbjct: 305 LASTY 309
>pdb|1BSV|A Chain A, Gdp-Fucose Synthetase From Escherichia Coli Complex With
Nadph
pdb|1FXS|A Chain A, Gdp-fucose Synthetase From Escherichia Coli Complex With
Nadp
pdb|1GFS|A Chain A, Gdp-Fucose Synthetase From E. Coli
Length = 321
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 70/305 (22%), Positives = 113/305 (37%), Gaps = 55/305 (18%)
Query: 30 APIAQQLPGESDQEFAEFSSKILHLKGDRKDYDFVKSSLSAKGFDVVYDINGREADEVEP 89
+ I +QL D E + L+L R +DF S + + + G A+ P
Sbjct: 17 SAIRRQLEQRGDVELVLRTRDELNLLDSRAVHDFFASERIDQVYLAAAKVGGIVANNTYP 76
Query: 90 -------------ILDAL--PNLEQFIYCSSAGVYLKSDLLPHCETD----TVDPK---- 126
I+ A ++ + ++ S+ +Y K P E++ T++P
Sbjct: 77 ADFIYQNMMIESNIIHAAHQNDVNKLLFLGSSCIYPKLAKQPMAESELLQGTLEPTNEPY 136
Query: 127 --SRHKGKLNTESVLESKGVNWTSLRPVYIYGPL-NYNPVEEWF-------FHRLKAGRP 176
++ G ES G ++ S+ P +YGP N++P FH A
Sbjct: 137 AIAKIAGIKLCESYNRQYGRDYRSVMPTNLYGPHDNFHPSNSHVIPALLRRFHEATAQNA 196
Query: 177 --IPIPGSGIQVTQLGHVKDLARAFVQV--------LGNEKASRQVFNISGEKYVTFDGL 226
+ + GSG + + HV D+A A + V L N + N+ T L
Sbjct: 197 PDVVVWGSGTPMREFLHVDDMAAASIHVMELAHEVWLENTQPMLSHINVGTGVDCTIREL 256
Query: 227 ARACAKAAGFPEPELVHYNPKEFDFGKKKAFPFRDQHFFASVEKAKHVLGWKPEFDLVEG 286
A+ AK G+ + FD K P + V + H LGW E L G
Sbjct: 257 AQTIAKVVGYKGRVV-------FDASKPDGTPRK----LLDVTRL-HQLGWYHEISLEAG 304
Query: 287 LADSY 291
LA +Y
Sbjct: 305 LASTY 309
>pdb|1E7R|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase Y136e
Length = 321
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 70/305 (22%), Positives = 113/305 (37%), Gaps = 55/305 (18%)
Query: 30 APIAQQLPGESDQEFAEFSSKILHLKGDRKDYDFVKSSLSAKGFDVVYDINGREADEVEP 89
+ I +QL D E + L+L R +DF S + + + G A+ P
Sbjct: 17 SAIRRQLEQRGDVELVLRTRDELNLLDSRAVHDFFASERIDQVYLAAAKVGGIVANNTYP 76
Query: 90 -------------ILDAL--PNLEQFIYCSSAGVYLKSDLLPHCETD----TVDPK---- 126
I+ A ++ + ++ S+ +Y K P E++ T++P
Sbjct: 77 ADFIYQNMMIESNIIHAAHQNDVNKLLFLGSSCIYPKLAKQPMAESELLQGTLEPTNEPE 136
Query: 127 --SRHKGKLNTESVLESKGVNWTSLRPVYIYGPL-NYNPVEEWF-------FHRLKAGRP 176
++ G ES G ++ S+ P +YGP N++P FH A
Sbjct: 137 AIAKIAGIKLCESYNRQYGRDYRSVMPTNLYGPHDNFHPSNSHVIPALLRRFHEATAQSA 196
Query: 177 --IPIPGSGIQVTQLGHVKDLARAFVQV--------LGNEKASRQVFNISGEKYVTFDGL 226
+ + GSG + + HV D+A A + V L N + N+ T L
Sbjct: 197 PDVVVWGSGTPMREFLHVDDMAAASIHVMELAHEVWLENTQPMLSHINVGTGVDCTIREL 256
Query: 227 ARACAKAAGFPEPELVHYNPKEFDFGKKKAFPFRDQHFFASVEKAKHVLGWKPEFDLVEG 286
A+ AK G+ + FD K P + V + H LGW E L G
Sbjct: 257 AQTIAKVVGYKGRVV-------FDASKPDGTPRK----LLDVTRL-HQLGWYHEISLEAG 304
Query: 287 LADSY 291
LA +Y
Sbjct: 305 LASTY 309
>pdb|1E7Q|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase S107a
Length = 321
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 69/305 (22%), Positives = 113/305 (37%), Gaps = 55/305 (18%)
Query: 30 APIAQQLPGESDQEFAEFSSKILHLKGDRKDYDFVKSSLSAKGFDVVYDINGREADEVEP 89
+ I +QL D E + L+L R +DF S + + + G A+ P
Sbjct: 17 SAIRRQLEQRGDVELVLRTRDELNLLDSRAVHDFFASERIDQVYLAAAKVGGIVANNTYP 76
Query: 90 -------------ILDAL--PNLEQFIYCSSAGVYLKSDLLPHCETD----TVDPK---- 126
I+ A ++ + ++ ++ +Y K P E++ T++P
Sbjct: 77 ADFIYQNMMIESNIIHAAHQNDVNKLLFLGASCIYPKLAKQPMAESELLQGTLEPTNEPY 136
Query: 127 --SRHKGKLNTESVLESKGVNWTSLRPVYIYGPL-NYNPVEEWF-------FHRLKAGRP 176
++ G ES G ++ S+ P +YGP N++P FH A
Sbjct: 137 AIAKIAGIKLCESYNRQYGRDYRSVMPTNLYGPHDNFHPSNSHVIPALLRRFHEATAQSA 196
Query: 177 --IPIPGSGIQVTQLGHVKDLARAFVQV--------LGNEKASRQVFNISGEKYVTFDGL 226
+ + GSG + + HV D+A A + V L N + N+ T L
Sbjct: 197 PDVVVWGSGTPMREFLHVDDMAAASIHVMELAHEVWLENTQPMLSHINVGTGVDCTIREL 256
Query: 227 ARACAKAAGFPEPELVHYNPKEFDFGKKKAFPFRDQHFFASVEKAKHVLGWKPEFDLVEG 286
A+ AK G+ + FD K P + V + H LGW E L G
Sbjct: 257 AQTIAKVVGYKGRVV-------FDASKPDGTPRK----LLDVTRL-HQLGWYHEISLEAG 304
Query: 287 LADSY 291
LA +Y
Sbjct: 305 LASTY 309
>pdb|3AW9|A Chain A, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|B Chain B, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|C Chain C, Structure Of Udp-Galactose 4-Epimerase Mutant
Length = 308
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 69/314 (21%), Positives = 117/314 (37%), Gaps = 53/314 (16%)
Query: 2 GGTRFIGVFLSRLLVKEGHQVTLFTRGKAPIAQQLPGESDQEFAEFSSKILHLKGDRKDY 61
GG FIG L LV+ G++V + I Q+ G S + LH++ D KDY
Sbjct: 7 GGAGFIGSHLVDKLVELGYEVVVVD-----IVQRDTGGSAE---------LHVR-DLKDY 51
Query: 62 DFVKSSLSAKGFDVVYDINGR---EADEVEPILDALPN---------------LEQFIYC 103
+ KG DVV+ EPI+ N + ++
Sbjct: 52 SW---GAGIKG-DVVFHFAANPEVRLSTTEPIVHFNENVVATFNVLEWARQTGVRTVVFA 107
Query: 104 SSAGVYLKSDLLPHCETDTVDPKS-----RHKGKLNTESVLESKGVNWTSLRPVYIYGP- 157
SS+ VY +D++P E + P S + G++ + GV ++R + GP
Sbjct: 108 SSSTVYGDADVIPTPEEEPYKPISVYGAAKAAGEVMCATYARLFGVRCLAVRYANVVGPR 167
Query: 158 LNYNPVEEWFFHRLKAGRPIPIPGSGIQVTQLGHVKDLARAFVQV---LGNEKASRQVFN 214
L + + ++ + + + G G Q +V+D A + A N
Sbjct: 168 LRHGVIYDFIMKLRRNPNVLEVLGDGTQRKSYLYVRDAVEATLAAWKKFEEMDAPFLALN 227
Query: 215 ISGEKYVTFDGLARACAKAAGF-PEPELVHYNPKEFDFGKKKAFPFRDQHFFASVEKAKH 273
+ V +A+ A+ G PE LV P + +P ++ +V K
Sbjct: 228 VGNVDAVRVLDIAQIVAEVLGLRPEIRLVPSTP------DGRGWPGDVKYMTLAVTKLMK 281
Query: 274 VLGWKPEFDLVEGL 287
+ GW+P E +
Sbjct: 282 LTGWRPTMTSAEAV 295
>pdb|3ICP|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
pdb|3KO8|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
Length = 312
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 68/314 (21%), Positives = 118/314 (37%), Gaps = 49/314 (15%)
Query: 2 GGTRFIGVFLSRLLVKEGHQVTLFTRGKAPIAQQLPGESDQEFAEFSSKILHLKGDRKDY 61
GG FIG L LV+ G++V + + +EF S++ LH++ D KDY
Sbjct: 7 GGAGFIGSHLVDKLVELGYEVVVVDNLSS---------GRREFVNPSAE-LHVR-DLKDY 55
Query: 62 DFVKSSLSAKGFDVVYDINGR---EADEVEPILDALPN---------------LEQFIYC 103
+ KG DVV+ EPI+ N + ++
Sbjct: 56 SW---GAGIKG-DVVFHFAANPEVRLSTTEPIVHFNENVVATFNVLEWARQTGVRTVVFA 111
Query: 104 SSAGVYLKSDLLPHCETDTVDPKS-----RHKGKLNTESVLESKGVNWTSLRPVYIYGP- 157
SS+ VY +D++P E + P S + G++ + GV ++R + GP
Sbjct: 112 SSSTVYGDADVIPTPEEEPYKPISVYGAAKAAGEVMCATYARLFGVRCLAVRYANVVGPR 171
Query: 158 LNYNPVEEWFFHRLKAGRPIPIPGSGIQVTQLGHVKDLARAFVQV---LGNEKASRQVFN 214
L + + ++ + + + G G Q +V+D A + A N
Sbjct: 172 LRHGVIYDFIMKLRRNPNVLEVLGDGTQRKSYLYVRDAVEATLAAWKKFEEMDAPFLALN 231
Query: 215 ISGEKYVTFDGLARACAKAAGF-PEPELVHYNPKEFDFGKKKAFPFRDQHFFASVEKAKH 273
+ V +A+ A+ G PE LV P + +P ++ +V K
Sbjct: 232 VGNVDAVRVLDIAQIVAEVLGLRPEIRLVPSTP------DGRGWPGDVKYMTLAVTKLMK 285
Query: 274 VLGWKPEFDLVEGL 287
+ GW+P E +
Sbjct: 286 LTGWRPTMTSAEAV 299
>pdb|2B69|A Chain A, Crystal Structure Of Human Udp-Glucoronic Acid
Decarboxylase
Length = 343
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 71/328 (21%), Positives = 130/328 (39%), Gaps = 36/328 (10%)
Query: 1 MGGTRFIGVFLSRLLVKEGHQVTL----FTRGKAPIAQQLPGESDQEFAEFSSKILHLKG 56
GG F+G L+ L +GH+VT+ FT K + + E+ + + L+++
Sbjct: 33 TGGAGFVGSHLTDKLXXDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPLYIEV 92
Query: 57 DRKDYDFVKSSLSAKGFDVVYDINGREADEVEPILDALPNLEQFIYCSSAGVYLKSDLLP 116
D+ + +S ++ + + + + A + + S++ VY ++ P
Sbjct: 93 DQIYHLASPASPPNYXYNPIKTLKTNTIGTLNXLGLAKRVGARLLLASTSEVYGDPEVHP 152
Query: 117 HCE-----TDTVDPKSRH-KGKLNTESVL----ESKGVNWTSLRPVYIYGP---LNYNPV 163
E + + P++ + +GK E+ + +GV R +GP N V
Sbjct: 153 QSEDYWGHVNPIGPRACYDEGKRVAETXCYAYXKQEGVEVRVARIFNTFGPRXHXNDGRV 212
Query: 164 EEWFFHRLKAGRPIPIPGSGIQVTQLGHVKDLARAFVQVLGNEKASRQVFNISGEKYVTF 223
F + G P+ + GSG Q +V DL V L N S V N+ + T
Sbjct: 213 VSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLV-ALXNSNVSSPV-NLGNPEEHTI 270
Query: 224 DGLARACAKAAGFPEPELVHYNPKEFDFGKKKAFPFRDQHFFASVEKAKHVLGWKPEFDL 283
A+ G E+ + + D K+K ++KAK LGW+P L
Sbjct: 271 LEFAQLIKNLVG-SGSEIQFLSEAQDDPQKRKP----------DIKKAKLXLGWEPVVPL 319
Query: 284 VEGLADSYNLDFGRGTYRKEADFSTDDM 311
EGL + + +RKE ++ ++
Sbjct: 320 EEGLNKAIHY------FRKELEYQANNQ 341
>pdb|1LRJ|A Chain A, Crystal Structure Of E. Coli Udp-Galactose 4-Epimerase
Complexed With Udp-N-Acetylglucosamine
pdb|1NAH|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli, Reduced
pdb|1NAI|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli, Oxidized
pdb|1UDA|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|1UDB|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-4-Deoxy-4- Fluoro-Alpha-D-Glucose
pdb|1XEL|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli
Length = 338
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 78/336 (23%), Positives = 132/336 (39%), Gaps = 60/336 (17%)
Query: 2 GGTRFIGVFLSRLLVKEGHQVTLF------TRGKAPIAQQLPG------ESDQEFAEFSS 49
GG+ +IG L++ GH V + R P+ ++L G E D +
Sbjct: 7 GGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMT 66
Query: 50 KILHLKGDRKDYDFVKSSLSAKGFDV-----VYDINGREADEVEPILDALPNLEQFIYCS 104
+ILH F + L A G V YD N + + A N++ FI+ S
Sbjct: 67 EILHDHAIDTVIHF--AGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAA-NVKNFIFSS 123
Query: 105 SAGVYLKSDLLPHCET-DTVDPKSRH-KGKLNTESV---LESKGVNWTSLRPVYIYGPLN 159
SA VY + +P+ E+ T P+S + K KL E + L+ +W S+ + + P+
Sbjct: 124 SATVYGDNPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDW-SIALLRYFNPVG 182
Query: 160 YNPVEEW-------------FFHRLKAGR--PIPIPGS------GIQVTQLGHVKDLARA 198
+P + + ++ GR + I G+ G V HV DLA
Sbjct: 183 AHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHVMDLADG 242
Query: 199 FVQVLGN--EKASRQVFNISGEKYVTFDGLARACAKAAGFPEPELVHYNPKEFDFGKKKA 256
V + K ++N+ + + A +KA G +P H+ P+ ++
Sbjct: 243 HVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACG--KPVNYHFAPR-----REGD 295
Query: 257 FPFRDQHFFASVEKAKHVLGWKPEFDLVEGLADSYN 292
P ++A KA L W+ L E D+++
Sbjct: 296 LPA----YWADASKADRELNWRVTRTLDEMAQDTWH 327
>pdb|2UDP|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
pdb|2UDP|B Chain B, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
pdb|1UDC|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-Mannose
Length = 338
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 78/336 (23%), Positives = 131/336 (38%), Gaps = 60/336 (17%)
Query: 2 GGTRFIGVFLSRLLVKEGHQVTLF------TRGKAPIAQQLPG------ESDQEFAEFSS 49
GG+ +IG L++ GH V + R P+ ++L G E D +
Sbjct: 7 GGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMT 66
Query: 50 KILHLKGDRKDYDFVKSSLSAKGFDV-----VYDINGREADEVEPILDALPNLEQFIYCS 104
+ILH F + L A G V YD N + + A N++ FI+ S
Sbjct: 67 EILHDHAIDTVIHF--AGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAA-NVKNFIFSS 123
Query: 105 SAGVYLKSDLLPHCET-DTVDPKSRH-KGKLNTESV---LESKGVNWTSLRPVYIYGPLN 159
SA VY +P+ E+ T P+S + K KL E + L+ +W S+ + + P+
Sbjct: 124 SATVYGDQPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDW-SIALLRYFNPVG 182
Query: 160 YNPVEEW-------------FFHRLKAGR--PIPIPGS------GIQVTQLGHVKDLARA 198
+P + + ++ GR + I G+ G V HV DLA
Sbjct: 183 AHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHVMDLADG 242
Query: 199 FVQVLGN--EKASRQVFNISGEKYVTFDGLARACAKAAGFPEPELVHYNPKEFDFGKKKA 256
V + K ++N+ + + A +KA G +P H+ P+ ++
Sbjct: 243 HVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACG--KPVNYHFAPR-----REGD 295
Query: 257 FPFRDQHFFASVEKAKHVLGWKPEFDLVEGLADSYN 292
P ++A KA L W+ L E D+++
Sbjct: 296 LPA----YWADASKADRELNWRVTRTLDEMAQDTWH 327
>pdb|1KVS|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 77/336 (22%), Positives = 132/336 (39%), Gaps = 60/336 (17%)
Query: 2 GGTRFIGVFLSRLLVKEGHQVTLF------TRGKAPIAQQLPG------ESDQEFAEFSS 49
GG+ +IG L++ GH V + R P+ ++L G E D +
Sbjct: 7 GGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMT 66
Query: 50 KILHLKGDRKDYDFVKSSLSAKGFDV-----VYDINGREADEVEPILDALPNLEQFIYCS 104
+ILH F + L A G V YD N + + A N++ FI+ S
Sbjct: 67 EILHDHAIDTVIHF--AGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAA-NVKNFIFSS 123
Query: 105 SAGVYLKSDLLPHCET-DTVDPKSRH-KGKLNTESV---LESKGVNWTSLRPVYIYGPLN 159
+A VY + +P+ E+ T P+S + K KL E + L+ +W S+ + + P+
Sbjct: 124 TATVYGDNPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDW-SIALLRYFNPVG 182
Query: 160 YNPVEEW-------------FFHRLKAGR--PIPIPGS------GIQVTQLGHVKDLARA 198
+P + + ++ GR + I G+ G V HV DLA
Sbjct: 183 AHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHVMDLADG 242
Query: 199 FVQVLGN--EKASRQVFNISGEKYVTFDGLARACAKAAGFPEPELVHYNPKEFDFGKKKA 256
V + K ++N+ + + A +KA G +P H+ P+ ++
Sbjct: 243 HVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACG--KPVNYHFAPR-----REGD 295
Query: 257 FPFRDQHFFASVEKAKHVLGWKPEFDLVEGLADSYN 292
P ++A KA L W+ L E D+++
Sbjct: 296 LPA----YWADASKADRELNWRVTRTLDEMAQDTWH 327
>pdb|1KVQ|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 77/336 (22%), Positives = 132/336 (39%), Gaps = 60/336 (17%)
Query: 2 GGTRFIGVFLSRLLVKEGHQVTLF------TRGKAPIAQQLPG------ESDQEFAEFSS 49
GG+ +IG L++ GH V + R P+ ++L G E D +
Sbjct: 7 GGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMT 66
Query: 50 KILHLKGDRKDYDFVKSSLSAKGFDV-----VYDINGREADEVEPILDALPNLEQFIYCS 104
+ILH F + L A G V YD N + + A N++ FI+ S
Sbjct: 67 EILHDHAIDTVIHF--AGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAA-NVKNFIFSS 123
Query: 105 SAGVYLKSDLLPHCET-DTVDPKSRH-KGKLNTESV---LESKGVNWTSLRPVYIYGPLN 159
+A VY + +P+ E+ T P+S + K KL E + L+ +W S+ + + P+
Sbjct: 124 AATVYGDNPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDW-SIALLRYFNPVG 182
Query: 160 YNPVEEW-------------FFHRLKAGR--PIPIPGS------GIQVTQLGHVKDLARA 198
+P + + ++ GR + I G+ G V HV DLA
Sbjct: 183 AHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHVMDLADG 242
Query: 199 FVQVLGN--EKASRQVFNISGEKYVTFDGLARACAKAAGFPEPELVHYNPKEFDFGKKKA 256
V + K ++N+ + + A +KA G +P H+ P+ ++
Sbjct: 243 HVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACG--KPVNYHFAPR-----REGD 295
Query: 257 FPFRDQHFFASVEKAKHVLGWKPEFDLVEGLADSYN 292
P ++A KA L W+ L E D+++
Sbjct: 296 LPA----YWADASKADRELNWRVTRTLDEMAQDTWH 327
>pdb|1KVR|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 77/336 (22%), Positives = 131/336 (38%), Gaps = 60/336 (17%)
Query: 2 GGTRFIGVFLSRLLVKEGHQVTLF------TRGKAPIAQQLPG------ESDQEFAEFSS 49
GG+ +IG L++ GH V + R P+ ++L G E D +
Sbjct: 7 GGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMT 66
Query: 50 KILHLKGDRKDYDFVKSSLSAKGFDV-----VYDINGREADEVEPILDALPNLEQFIYCS 104
+ILH F + L A G V YD N + + A N++ FI+ S
Sbjct: 67 EILHDHAIDTVIHF--AGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAA-NVKNFIFSS 123
Query: 105 SAGVYLKSDLLPHCET-DTVDPKSRH-KGKLNTESV---LESKGVNWTSLRPVYIYGPLN 159
+A VY +P+ E+ T P+S + K KL E + L+ +W S+ + + P+
Sbjct: 124 AATVYGDQPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDW-SIALLRYFNPVG 182
Query: 160 YNPVEEW-------------FFHRLKAGR--PIPIPGS------GIQVTQLGHVKDLARA 198
+P + + ++ GR + I G+ G V HV DLA
Sbjct: 183 AHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHVMDLADG 242
Query: 199 FVQVLGN--EKASRQVFNISGEKYVTFDGLARACAKAAGFPEPELVHYNPKEFDFGKKKA 256
V + K ++N+ + + A +KA G +P H+ P+ ++
Sbjct: 243 HVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACG--KPVNYHFAPR-----REGD 295
Query: 257 FPFRDQHFFASVEKAKHVLGWKPEFDLVEGLADSYN 292
P ++A KA L W+ L E D+++
Sbjct: 296 LPA----YWADASKADRELNWRVTRTLDEMAQDTWH 327
>pdb|2Q1W|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
pdb|2Q1W|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
pdb|2Q1W|C Chain C, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
Length = 333
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 65/279 (23%), Positives = 107/279 (38%), Gaps = 29/279 (10%)
Query: 7 IGVFLSRLLVKEGHQVTLFTRGKAPIAQQLPGESDQEFAEFS----SKILHLKGDRKDYD 62
IG ++ LL++ G +V + L + F E S + + L GD +
Sbjct: 33 IGSHIAELLLERGDKVVGIDNFATGRREHLKDHPNLTFVEGSIADHALVNQLIGDLQPDA 92
Query: 63 FVKSSLSAKGFDVVYDINGREADEVEPILDALP--NLEQFIYCSSAGVY-LKSDLLPHCE 119
V ++ S K D Y+ ++ A N+ +F+Y +A Y +K P
Sbjct: 93 VVHTAASYKDPDDWYNDTLTNCVGGSNVVQAAKKNNVGRFVYFQTALCYGVKPIQQPVRL 152
Query: 120 TDTVDP--KSRHKGKLNTESVLESKGVNWTSLRPVYIYGPLNYNPVEEWFFHRLKAGRPI 177
+P S K E LE G+++ + R + GP N + FF RL G+
Sbjct: 153 DHPRNPANSSYAISKSANEDYLEYSGLDFVTFRLANVVGPRNVSGPLPIFFQRLSEGKKC 212
Query: 178 PIPGSGIQVTQLGHVKDLARAFVQVLGNEKASRQVFNISGEKYVTFDGLARACAKAAG-- 235
+ + VKDLARA V+ + + ++ S V L A +A
Sbjct: 213 FVTKAR---RDFVFVKDLARATVRAV--DGVGHGAYHFSSGTDVAIKELYDAVVEAMALP 267
Query: 236 -FPEPELVHYNPKEF------------DFGKKKAFPFRD 261
+PEPE+ P + DFGK + P ++
Sbjct: 268 SYPEPEIRELGPDDAPSILLDPSRTIQDFGKIEFTPLKE 306
>pdb|1LRK|A Chain A, Crystal Structure Of Escherichia Coli Udp-Galactose
4-Epimerase Mutant Y299c Complexed With
Udp-N-Acetylglucosamine
pdb|1LRL|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase Mutant
Y299c Complexed With Udp-Glucose
Length = 338
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 78/336 (23%), Positives = 131/336 (38%), Gaps = 60/336 (17%)
Query: 2 GGTRFIGVFLSRLLVKEGHQVTLF------TRGKAPIAQQLPG------ESDQEFAEFSS 49
GG+ +IG L++ GH V + R P+ ++L G E D +
Sbjct: 7 GGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMT 66
Query: 50 KILHLKGDRKDYDFVKSSLSAKGFDV-----VYDINGREADEVEPILDALPNLEQFIYCS 104
+ILH F + L A G V YD N + + A N++ FI+ S
Sbjct: 67 EILHDHAIDTVIHF--AGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAA-NVKNFIFSS 123
Query: 105 SAGVYLKSDLLPHCET-DTVDPKSRH-KGKLNTESV---LESKGVNWTSLRPVYIYGPLN 159
SA VY + +P+ E+ T P+S + K KL E + L+ +W S+ + + P+
Sbjct: 124 SATVYGDNPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDW-SIALLRYFNPVG 182
Query: 160 YNPVEEW-------------FFHRLKAGR--PIPIPGS------GIQVTQLGHVKDLARA 198
+P + + ++ GR + I G+ G V HV DLA
Sbjct: 183 AHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHVMDLADG 242
Query: 199 FVQVLGN--EKASRQVFNISGEKYVTFDGLARACAKAAGFPEPELVHYNPKEFDFGKKKA 256
V + K ++N+ + + A +KA G +P H+ P+ ++
Sbjct: 243 HVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACG--KPVNYHFAPR-----REGD 295
Query: 257 FPFRDQHFFASVEKAKHVLGWKPEFDLVEGLADSYN 292
P +A KA L W+ L E D+++
Sbjct: 296 LPA----CWADASKADRELNWRVTRTLDEMAQDTWH 327
>pdb|1KVU|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 78/336 (23%), Positives = 130/336 (38%), Gaps = 60/336 (17%)
Query: 2 GGTRFIGVFLSRLLVKEGHQVTLF------TRGKAPIAQQLPG------ESDQEFAEFSS 49
GG+ +IG L++ GH V + R P+ ++L G E D +
Sbjct: 7 GGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMT 66
Query: 50 KILHLKGDRKDYDFVKSSLSAKGFDV-----VYDINGREADEVEPILDALPNLEQFIYCS 104
+ILH F + L A G V YD N + + A N++ FI+ S
Sbjct: 67 EILHDHAIDTVIHF--AGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAA-NVKNFIFSS 123
Query: 105 SAGVYLKSDLLPHCET-DTVDPKSRH-KGKLNTESV---LESKGVNWTSLRPVYIYGPLN 159
SA VY +P+ E+ T P+S K KL E + L+ +W S+ + + P+
Sbjct: 124 SATVYGDQPKIPYVESFPTGTPQSPFGKSKLMVEQILTDLQKAQPDW-SIALLRYFNPVG 182
Query: 160 YNPVEEW-------------FFHRLKAGR--PIPIPGS------GIQVTQLGHVKDLARA 198
+P + + ++ GR + I G+ G V HV DLA
Sbjct: 183 AHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHVMDLADG 242
Query: 199 FVQVLGN--EKASRQVFNISGEKYVTFDGLARACAKAAGFPEPELVHYNPKEFDFGKKKA 256
V + K ++N+ + + A +KA G +P H+ P+ ++
Sbjct: 243 HVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACG--KPVNYHFAPR-----REGD 295
Query: 257 FPFRDQHFFASVEKAKHVLGWKPEFDLVEGLADSYN 292
P ++A KA L W+ L E D+++
Sbjct: 296 LPA----YWADASKADRELNWRVTRTLDEMAQDTWH 327
>pdb|1G1A|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|C Chain C, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|D Chain D, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1KEU|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Dtdp-D-Glucose Bound
pdb|1KEU|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Dtdp-D-Glucose Bound
pdb|1KEW|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Thymidine Diphosphate Bound
pdb|1KEW|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Thymidine Diphosphate Bound
Length = 361
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 46/114 (40%), Gaps = 20/114 (17%)
Query: 174 GRPIPIPGSGIQVTQLGHVKDLARAFVQVLGNEKASRQVFNISGEK--------YVTFDG 225
G+P+PI G G Q+ +V+D ARA V+ KA + +NI G + D
Sbjct: 218 GKPLPIYGKGDQIRDWLYVEDHARALHMVVTEGKAG-ETYNIGGHNEKKNLDVVFTICDL 276
Query: 226 LARACAKAAGFPEPELVHYNPKEFDFGKKKAFPFRDQHFFASVEKAKHVLGWKP 279
L KA + E + + + P D+ + K LGWKP
Sbjct: 277 LDEIVPKATSYRE---------QITYVADR--PGHDRRYAIDAGKISRELGWKP 319
>pdb|1KVT|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 77/336 (22%), Positives = 131/336 (38%), Gaps = 60/336 (17%)
Query: 2 GGTRFIGVFLSRLLVKEGHQVTLF------TRGKAPIAQQLPG------ESDQEFAEFSS 49
GG+ +IG L++ GH V + R P+ ++L G E D +
Sbjct: 7 GGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMT 66
Query: 50 KILHLKGDRKDYDFVKSSLSAKGFDV-----VYDINGREADEVEPILDALPNLEQFIYCS 104
+ILH F + L A G V YD N + + A N++ FI+ S
Sbjct: 67 EILHDHAIDTVIHF--AGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAA-NVKNFIFSS 123
Query: 105 SAGVYLKSDLLPHCET-DTVDPKSRH-KGKLNTESV---LESKGVNWTSLRPVYIYGPLN 159
A VY + +P+ E+ T P+S + K KL E + L+ +W S+ + + P+
Sbjct: 124 VATVYGDNPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDW-SIALLRYFNPVG 182
Query: 160 YNPVEEW-------------FFHRLKAGR--PIPIPGS------GIQVTQLGHVKDLARA 198
+P + + ++ GR + I G+ G V HV DLA
Sbjct: 183 AHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHVMDLADG 242
Query: 199 FVQVLGN--EKASRQVFNISGEKYVTFDGLARACAKAAGFPEPELVHYNPKEFDFGKKKA 256
V + K ++N+ + + A +KA G +P H+ P+ ++
Sbjct: 243 HVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACG--KPVNYHFAPR-----REGD 295
Query: 257 FPFRDQHFFASVEKAKHVLGWKPEFDLVEGLADSYN 292
P ++A KA L W+ L E D+++
Sbjct: 296 LPA----YWADASKADRELNWRVTRTLDEMAQDTWH 327
>pdb|1A9Z|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH
UDP- Galactose
Length = 338
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 77/336 (22%), Positives = 131/336 (38%), Gaps = 60/336 (17%)
Query: 2 GGTRFIGVFLSRLLVKEGHQVTLF------TRGKAPIAQQLPG------ESDQEFAEFSS 49
GG+ +IG L++ GH V + R P+ ++L G E D +
Sbjct: 7 GGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMT 66
Query: 50 KILHLKGDRKDYDFVKSSLSAKGFDV-----VYDINGREADEVEPILDALPNLEQFIYCS 104
+ILH F + L A G V YD N + + A N++ FI+ S
Sbjct: 67 EILHDHAIDTVIHF--AGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAA-NVKNFIFSS 123
Query: 105 SAGVYLKSDLLPHCET-DTVDPKSRH-KGKLNTESV---LESKGVNWTSLRPVYIYGPLN 159
+A VY + +P+ E+ T P+S K KL E + L+ +W S+ + + P+
Sbjct: 124 AATVYGDNPKIPYVESFPTGTPQSPFGKSKLMVEQILTDLQKAQPDW-SIALLRYFNPVG 182
Query: 160 YNPVEEW-------------FFHRLKAGR--PIPIPGS------GIQVTQLGHVKDLARA 198
+P + + ++ GR + I G+ G V HV DLA
Sbjct: 183 AHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHVMDLADG 242
Query: 199 FVQVLGN--EKASRQVFNISGEKYVTFDGLARACAKAAGFPEPELVHYNPKEFDFGKKKA 256
V + K ++N+ + + A +KA G +P H+ P+ ++
Sbjct: 243 HVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACG--KPVNYHFAPR-----REGD 295
Query: 257 FPFRDQHFFASVEKAKHVLGWKPEFDLVEGLADSYN 292
P ++A KA L W+ L E D+++
Sbjct: 296 LPA----YWADASKADRELNWRVTRTLDEMAQDTWH 327
>pdb|1A9Y|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH
UDP- Glucose
Length = 338
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 77/336 (22%), Positives = 130/336 (38%), Gaps = 60/336 (17%)
Query: 2 GGTRFIGVFLSRLLVKEGHQVTLF------TRGKAPIAQQLPG------ESDQEFAEFSS 49
GG+ +IG L++ GH V + R P+ ++L G E D +
Sbjct: 7 GGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMT 66
Query: 50 KILHLKGDRKDYDFVKSSLSAKGFDV-----VYDINGREADEVEPILDALPNLEQFIYCS 104
+ILH F + L A G V YD N + + A N++ FI+ S
Sbjct: 67 EILHDHAIDTVIHF--AGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAA-NVKNFIFSS 123
Query: 105 SAGVYLKSDLLPHCET-DTVDPKSRH-KGKLNTESV---LESKGVNWTSLRPVYIYGPLN 159
+A VY +P+ E+ T P+S K KL E + L+ +W S+ + + P+
Sbjct: 124 AATVYGDQPKIPYVESFPTGTPQSPFGKSKLMVEQILTDLQKAQPDW-SIALLRYFNPVG 182
Query: 160 YNPVEEW-------------FFHRLKAGR--PIPIPGS------GIQVTQLGHVKDLARA 198
+P + + ++ GR + I G+ G V HV DLA
Sbjct: 183 AHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHVMDLADG 242
Query: 199 FVQVLGN--EKASRQVFNISGEKYVTFDGLARACAKAAGFPEPELVHYNPKEFDFGKKKA 256
V + K ++N+ + + A +KA G +P H+ P+ ++
Sbjct: 243 HVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACG--KPVNYHFAPR-----REGD 295
Query: 257 FPFRDQHFFASVEKAKHVLGWKPEFDLVEGLADSYN 292
P ++A KA L W+ L E D+++
Sbjct: 296 LPA----YWADASKADRELNWRVTRTLDEMAQDTWH 327
>pdb|4B4O|A Chain A, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|B Chain B, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|C Chain C, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|D Chain D, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|E Chain E, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|F Chain F, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|G Chain G, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|H Chain H, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
Length = 298
Score = 35.0 bits (79), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 20/30 (66%)
Query: 2 GGTRFIGVFLSRLLVKEGHQVTLFTRGKAP 31
GGT FIG L++LL GH+VTL +R P
Sbjct: 7 GGTGFIGTALTQLLNARGHEVTLVSRKPGP 36
>pdb|3M2P|A Chain A, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|B Chain B, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|C Chain C, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|D Chain D, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|E Chain E, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|F Chain F, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
Length = 311
Score = 35.0 bits (79), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 67/296 (22%), Positives = 114/296 (38%), Gaps = 34/296 (11%)
Query: 2 GGTRFIGVFLSRLLVKEGHQVTLFTRGKAPIAQQLPGESDQEFAEFSSKILHLKGDRKDY 61
GGT F+G ++ + +G+ + TR A +D E+ + L D
Sbjct: 9 GGTGFLGQYVVESIKNDGNTPIILTRSIGNKAI-----NDYEYRVSDYTLEDLINQLNDV 63
Query: 62 DFVKSSLSAKGFDVVYDINGREADEV--EPILDAL--PNLEQFIYCSSAGVYLKSDLLPH 117
D V + +G I+ +E+ + + DA N+ +Y S+ Y LP
Sbjct: 64 DAVVHLAATRGSQG--KISEFHDNEILTQNLYDACYENNISNIVYASTISAYSDETSLPW 121
Query: 118 CETDTVDPKSRHK-GKLNTESV----LESKGVNWTSLRPVYIYGPLNYNPVEEW----FF 168
E + P + KL E + KG+ +LR ++YG +N + FF
Sbjct: 122 NEKELPLPDLXYGVSKLACEHIGNIYSRKKGLCIKNLRFAHLYG---FNEKNNYXINRFF 178
Query: 169 HRLKAGRPIPIPGSGIQVTQLGHVKDLARAFVQVLGNEKASRQVFNISGEKYVTFDGLAR 228
+ G + + + + + + KD A++ + L EK S FNI +T +A
Sbjct: 179 RQAFHGEQLTLHANSVAKREFLYAKDAAKSVIYALKQEKVS-GTFNIGSGDALTNYEVAN 237
Query: 229 ACAKAAGFPEPELVHYNPKE--------FDFGK-KKAFPFRDQHFFASVEKAKHVL 275
A G + LV NP D K K+ F + FA+ + H+L
Sbjct: 238 TINNAFGNKDNLLVK-NPNANEGIHSSYXDSSKAKELLDFSTDYNFATAVEEIHLL 292
>pdb|2P5U|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|B Chain B, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|C Chain C, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|D Chain D, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5Y|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 Udp-glucose
4- Epimerase Complex With Nad
Length = 311
Score = 34.7 bits (78), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 68/159 (42%), Gaps = 28/159 (17%)
Query: 140 ESKGVNWTSLRPVYIYGPLNYNP-----VEEWFFHRLKAGRPIPI-----PGSGIQVTQL 189
+S G+ W SLR +YGP +P V F R+ G P+ + PG V
Sbjct: 159 QSYGLKWVSLRYGNVYGP-RQDPHGEAGVVAIFAERVLKGLPVTLYARKTPGDEGCVRDY 217
Query: 190 GHVKDLARAFVQVLGNEKASRQVFNI-SGEKYVTFDGLARACAKAAGFPEPELVHYNPKE 248
+V D+A A L + + ++N+ +GE + T + L A A+AAG PE+ P+
Sbjct: 218 VYVGDVAEAHALALFSLEG---IYNVGTGEGHTTREVLM-AVAEAAG-KAPEVQPAPPRP 272
Query: 249 FDFGKKKAFPFRDQHFFASVEKAKHVLGWKPEFDLVEGL 287
D + P + GW+P+ EG+
Sbjct: 273 GDLERSVLSPLKLMAH-----------GWRPKVGFQEGI 300
>pdb|2PZJ|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+
pdb|2Q1S|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nadh
pdb|2Q1T|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+ And Udp
pdb|2Q1U|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+ And Udp
pdb|2Q1U|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+ And Udp
Length = 377
Score = 34.3 bits (77), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 54/142 (38%), Gaps = 25/142 (17%)
Query: 146 WTSLRPVYIYGPLNYNPVEEWFFHRLKAGRPIPIPGSGIQVTQLGHVKDLARAFVQVLGN 205
W ++ P +IY L G P+P+ G+ V+D+A + +
Sbjct: 231 WRNVTPTFIYKALK--------------GMPLPLENGGVATRDFIFVEDVANGLIACAAD 276
Query: 206 EKASRQVFNISGEKYVTFDGLARACAKAAGFPEPELVHYNPKEFDFGKKKAFPFRDQHFF 265
V+NI+ K + LA + G N E D K+ + + F
Sbjct: 277 GTPG-GVYNIASGKETSIADLATKINEITG---------NNTELDRLPKRPWDNSGKR-F 325
Query: 266 ASVEKAKHVLGWKPEFDLVEGL 287
S EKA+ LG+ + + +GL
Sbjct: 326 GSPEKARRELGFSADVSIDDGL 347
>pdb|2HUN|A Chain A, Crystal Structure Of Hypothetical Protein Ph0414 From
Pyrococcus Horikoshii Ot3
pdb|2HUN|B Chain B, Crystal Structure Of Hypothetical Protein Ph0414 From
Pyrococcus Horikoshii Ot3
Length = 336
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 78/197 (39%), Gaps = 21/197 (10%)
Query: 99 QFIYCSSAGVYLKSDLL--PHCETDTVDPKSRHKGKLNTESVL-----ESKGVNWTSLRP 151
+F++ S+ VY D+L E D + P S + +L + +N + R
Sbjct: 121 RFVHVSTDEVY--GDILKGSFTENDRLMPSSPYSATKAASDMLVLGWTRTYNLNASITRC 178
Query: 152 VYIYGPLNY-NPVEEWFFHRLKAGRPIPIPGSGIQVTQLGHVKDLARAFVQVLGNEKASR 210
YGP + + R G IPI G+G V +V+D RA VL + SR
Sbjct: 179 TNNYGPYQFPEKLIPKTIIRASLGLKIPIYGTGKNVRDWLYVEDHVRAIELVLL-KGESR 237
Query: 211 QVFNISGEKYVTFDGLARACAKAAGFPEPELVHYNPKEFDFGKKKAFPFRDQHFFASVEK 270
+++NIS + T + + + G E EL+ P D + K
Sbjct: 238 EIYNISAGEEKTNLEVVKIILRLMGKGE-ELIELVEDR---------PGHDLRYSLDSWK 287
Query: 271 AKHVLGWKPEFDLVEGL 287
L W+P++ EG+
Sbjct: 288 ITRDLKWRPKYTFDEGI 304
>pdb|3GPI|A Chain A, Structure Of Putative Nad-Dependent EpimeraseDEHYDRATASE
From Methylobacillus Flagellatus
Length = 286
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 67/164 (40%), Gaps = 18/164 (10%)
Query: 1 MGGTRFIGVFLSRLLVKEGHQVTLFTRGKAPIAQQLPGESDQEFAEFS-----SKILHLK 55
+ G +G+ L+R L +GH+VT R AQ +P A+ + + I+HL+
Sbjct: 8 IAGCGDLGLELARRLTAQGHEVTGLRRS----AQPMPAGVQTLIADVTRPDTLASIVHLR 63
Query: 56 GDRKDYDFVKSSLSAKGFDVVYDINGREADEVEPILDALPN--LEQFIYCSSAGVYLKSD 113
+ Y S S + + + Y + + L AL L+ + SS GVY +
Sbjct: 64 PEILVYCVAASEYSDEHYRLSY------VEGLRNTLSALEGAPLQHVFFVSSTGVY-GQE 116
Query: 114 LLPHCETDTVDPKSRHKGKLNTESVLESKGVNWTSLRPVYIYGP 157
+ + DT GK E+ + T LR IYGP
Sbjct: 117 VEEWLDEDTPPIAKDFSGKRMLEAEALLAAYSSTILRFSGIYGP 160
>pdb|1SB8|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa
Udp-N-Acetylglucosamine 4- Epimerase Complexed With
Udp-N-Acetylgalactosamine
pdb|1SB9|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa
Udp-N-Acetylglucosamine 4- Epimerase Complexed With
Udp-Glucose
Length = 352
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 44/204 (21%), Positives = 78/204 (38%), Gaps = 19/204 (9%)
Query: 97 LEQFIYCSSAGVYLKSDLLPHCETDTVDPKS-----RHKGKLNTESVLESKGVNWTSLRP 151
++ F Y +S+ Y LP E P S ++ +L + G + LR
Sbjct: 145 VQSFTYAASSSTYGDHPGLPKVEDTIGKPLSPYAVTKYVNELYADVFSRCYGFSTIGLRY 204
Query: 152 VYIYGPLN-----YNPVEEWFFHRLKAGRPIPIPGSGIQVTQLGHVKDLARA-FVQVLGN 205
++G Y V + + G + I G G ++++ +A +
Sbjct: 205 FNVFGRRQDPNGAYAAVIPKWTSSMIQGDDVYINGDGETSRDFCYIENTVQANLLAATAG 264
Query: 206 EKASRQVFNISGEKYVTFDGLARACAKAAGFPEPEL-VHYNPKEFDFGKKKAFPFRDQHF 264
A QV+NI+ + + L A G E + H P DF + +H
Sbjct: 265 LDARNQVYNIAVGGRTSLNQLFFALRD--GLAENGVSYHREPVYRDFREGDV-----RHS 317
Query: 265 FASVEKAKHVLGWKPEFDLVEGLA 288
A + KA +LG+ P++D+ G+A
Sbjct: 318 LADISKAAKLLGYAPKYDVSAGVA 341
>pdb|4EGB|A Chain A, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|B Chain B, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|C Chain C, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|D Chain D, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|E Chain E, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|F Chain F, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|G Chain G, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|H Chain H, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
Length = 346
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 49/117 (41%), Gaps = 11/117 (9%)
Query: 174 GRPIPIPGSGIQVTQLGHVKDLARAFVQVLGNEKASRQVFNISGEKYVTFDGLARACAKA 233
G+ +P+ G G+ V HV D A VL + +V+NI G T +
Sbjct: 225 GKKLPLYGDGLNVRDWLHVTDHCSAIDVVLHKGRVG-EVYNIGGNNEKTNVEVVEQIITL 283
Query: 234 AGFPEPELVHYNPKEFDFGKKKAFPFRDQHFFASVEKAKHVLGWKPEFDLVEGLADS 290
G + ++ + + G D+ + + EK K+ W+P++ +GL ++
Sbjct: 284 LGKTKKDIEYVTDR---LG-------HDRRYAINAEKXKNEFDWEPKYTFEQGLQET 330
>pdb|1Z74|A Chain A, Crystal Structure Of E.Coli Arna Dehydrogenase
(Decarboxylase) Domain, R619y Mutant
Length = 358
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 67/174 (38%), Gaps = 22/174 (12%)
Query: 140 ESKGVNWTSLRPVYIYGPL--NYNPVE-------EWFFHRLKAGRPIPIPGSGIQVTQLG 190
E +G+ +T RP GP N N L G PI + G Q
Sbjct: 177 EKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFT 236
Query: 191 HVKDLARAFVQVLGN--EKASRQVFNISG-EKYVTFDGLARACAKAAGFPEPELVHYNPK 247
++D A +++ N + ++ NI E + + L A F + L H+ P
Sbjct: 237 DIRDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLL--ASFEKHPLRHHFPP 294
Query: 248 EFDFGKKKAFPFRD------QHFFASVEKAKHVLGWKPEFDLVEGLADSYNLDF 295
F ++ + +H+ S+ A L W+P+ D+ E + ++ LDF
Sbjct: 295 FAGFRVVESSSYYGKGYQDVEHYKPSIRNAHRCLDWEPKIDMQETIDET--LDF 346
>pdb|3VPS|A Chain A, Structure Of A Novel Nad Dependent-Ndp-Hexosamine
5,6-Dehydratase, Tuna, Involved In Tunicamycin
Biosynthesis
pdb|3VPS|B Chain B, Structure Of A Novel Nad Dependent-Ndp-Hexosamine
5,6-Dehydratase, Tuna, Involved In Tunicamycin
Biosynthesis
Length = 321
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 64/282 (22%), Positives = 103/282 (36%), Gaps = 49/282 (17%)
Query: 2 GGTRFIGVFLSRLLVKEGHQVTLFTRGKAPIAQQLPGESDQEFAEFSSKILHL-KGDRKD 60
GG FIG L+R LV G +VT+ + P +P E +F E +L L + D D
Sbjct: 14 GGAGFIGGHLARALVASGEEVTVLDDLRVP--PMIPPEGTGKFLE--KPVLELEERDLSD 69
Query: 61 YDFVKSSLSAKGFDVVYDINGREADEVEPILDALPNLEQ----FIYCSSAG--------- 107
V S K + +P LD L N++ C+S G
Sbjct: 70 VRLVYHLASHKSVPRSFK---------QP-LDYLDNVDSGRHLLALCTSVGVPKVVVGST 119
Query: 108 --VYLKSDLLPHCETDTVDPKSRH----------KGKLNTESVLESKGVNWTSLRPVYIY 155
VY ++D LP E + P+S + G SV G+ +R +Y
Sbjct: 120 CEVYGQADTLPTPEDSPLSPRSPYAASKVGLEMVAGAHQRASVAPEVGI----VRFFNVY 175
Query: 156 GPLNY-NPVEEWFFHRLKAGRPIPIPGSGIQVTQLGHVKDLARAFVQVLGNEKASRQVFN 214
GP + + L +P+ G G Q ++ D+ V + S V N
Sbjct: 176 GPGERPDALVPRLCANLLTRNELPVEGDGEQRRDFTYITDVVDKLVALANRPLPS--VVN 233
Query: 215 ISGEKYVTFDGLARACAKAAGFPEPELVHYNPKEFDFGKKKA 256
+ ++ + + R A P E+ P+ + + +A
Sbjct: 234 FGSGQSLSVNDVIRIL--QATSPAAEVARKQPRPNEITEFRA 273
>pdb|3RU9|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU9|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU9|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU9|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUD|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUD|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUD|C Chain C, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUD|D Chain D, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|S Chain S, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|BB Chain b, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|S Chain S, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|BB Chain b, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|C Chain C, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|D Chain D, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
Length = 351
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 47/216 (21%), Positives = 86/216 (39%), Gaps = 29/216 (13%)
Query: 90 ILDALPN--LEQFIYCSSAGVYLKSDLLPHCETDTVDPKS-----RHKGKLNTESVLESK 142
IL A N ++ F Y +S+ Y LP E + +P S ++ ++ + +
Sbjct: 134 ILHAAKNAQVQSFTYAASSSTYGDHPALPKVEENIGNPLSPYAVTKYVNEIYAQVYARTY 193
Query: 143 GVNWTSLRPVYIYGPLNYNP-------VEEWFFHRLKAGRPIPIPGSGIQVTQLGHVKDL 195
G LR ++G +P + +W LK G + I G G ++ ++
Sbjct: 194 GFKTIGLRYFNVFGRRQ-DPNGAYAAVIPKWTAAMLK-GDDVYINGDGETSRDFCYIDNV 251
Query: 196 ARA-FVQVLGNEKASRQVFNISGEKYVTFDGLARACAKAAGFPEPELVHYNPKEFDFGKK 254
+ + L + A ++N++ T + L+ + E L+H+ D
Sbjct: 252 IQMNILSALAKDSAKDNIYNVAVGDRTTLNELSGYI-----YDELNLIHH----IDKLSI 302
Query: 255 KAFPFRD---QHFFASVEKAKHVLGWKPEFDLVEGL 287
K FR +H A V KA +L ++P + EGL
Sbjct: 303 KYREFRSGDVRHSQADVTKAIDLLKYRPNIKIREGL 338
>pdb|3RU7|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU7|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU7|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU7|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
Length = 351
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 47/216 (21%), Positives = 86/216 (39%), Gaps = 29/216 (13%)
Query: 90 ILDALPN--LEQFIYCSSAGVYLKSDLLPHCETDTVDPKS-----RHKGKLNTESVLESK 142
IL A N ++ F Y +S+ Y LP E + +P S ++ ++ + +
Sbjct: 128 ILHAAKNAQVQSFTYAASSSTYGDHPALPKVEENIGNPLSPYAVTKYVNEIYAQVYARTY 187
Query: 143 GVNWTSLRPVYIYGPLNYNP-------VEEWFFHRLKAGRPIPIPGSGIQVTQLGHVKDL 195
G LR ++G +P + +W LK G + I G G ++ ++
Sbjct: 188 GFKTIGLRYFNVFGRRQ-DPNGAYAAVIPKWTAAMLK-GDDVYINGDGETSRDFCYIDNV 245
Query: 196 ARA-FVQVLGNEKASRQVFNISGEKYVTFDGLARACAKAAGFPEPELVHYNPKEFDFGKK 254
+ + L + A ++N++ T + L+ + E L+H+ D
Sbjct: 246 IQMNILSALAKDSAKDNIYNVAVGDRTTLNELSGYI-----YDELNLIHH----IDKLSI 296
Query: 255 KAFPFRD---QHFFASVEKAKHVLGWKPEFDLVEGL 287
K FR +H A V KA +L ++P + EGL
Sbjct: 297 KYREFRSGDVRHSQADVTKAIDLLKYRPNIKIREGL 332
>pdb|3LU1|A Chain A, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
pdb|3LU1|B Chain B, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
pdb|3LU1|C Chain C, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
pdb|3LU1|D Chain D, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
Length = 364
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 47/216 (21%), Positives = 86/216 (39%), Gaps = 29/216 (13%)
Query: 90 ILDALPN--LEQFIYCSSAGVYLKSDLLPHCETDTVDPKS-----RHKGKLNTESVLESK 142
IL A N ++ F Y +S+ Y LP E + +P S ++ ++ + +
Sbjct: 147 ILHAAKNAQVQSFTYAASSSTYGDHPALPKVEENIGNPLSPYAVTKYVNEIYAQVYARTY 206
Query: 143 GVNWTSLRPVYIYGPLNYNP-------VEEWFFHRLKAGRPIPIPGSGIQVTQLGHVKDL 195
G LR ++G +P + +W LK G + I G G ++ ++
Sbjct: 207 GFKTIGLRYFNVFGRRQ-DPNGAYAAVIPKWTAAMLK-GDDVYINGDGETSRDFCYIDNV 264
Query: 196 ARA-FVQVLGNEKASRQVFNISGEKYVTFDGLARACAKAAGFPEPELVHYNPKEFDFGKK 254
+ + L + A ++N++ T + L+ + E L+H+ D
Sbjct: 265 IQMNILSALAKDSAKDNIYNVAVGDRTTLNELSGYI-----YDELNLIHH----IDKLSI 315
Query: 255 KAFPFRD---QHFFASVEKAKHVLGWKPEFDLVEGL 287
K FR +H A V KA +L ++P + EGL
Sbjct: 316 KYREFRSGDVRHSQADVTKAIDLLKYRPNIKIREGL 351
>pdb|3SC4|A Chain A, Crystal Structure Of A Short Chain Dehydrogenase (A0qtm2
Homolog) Mycobacterium Thermoresistibile
pdb|3SC4|B Chain B, Crystal Structure Of A Short Chain Dehydrogenase (A0qtm2
Homolog) Mycobacterium Thermoresistibile
Length = 285
Score = 32.0 bits (71), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 2 GGTRFIGVFLSRLLVKEGHQVTLFTRGKAPIAQQLPG---ESDQEFAEFSSKILHLKGDR 58
GG+R IG+ +++ + +G V L + P +LPG + +E E + L + GD
Sbjct: 16 GGSRGIGLAIAKRVAADGANVALVAKSAEP-HPKLPGTIYTAAKEIEEAGGQALPIVGDI 74
Query: 59 KDYD 62
+D D
Sbjct: 75 RDGD 78
>pdb|1R6D|A Chain A, Crystal Structure Of Desiv Double Mutant (Dtdp-Glucose
4,6- Dehydratase) From Streptomyces Venezuelae With Nad
And Dau Bound
Length = 337
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 41/199 (20%), Positives = 73/199 (36%), Gaps = 23/199 (11%)
Query: 99 QFIYCSSAGVYLKSDLLPHCETDTVDPKSRHKGK-----LNTESVLESKGVNWTSLRPVY 153
+ ++ S+ VY D E+ ++P S + L + + G++ R
Sbjct: 121 RVVHVSTNQVYGSIDSGSWTESSPLEPNSPYAASKAGSDLVARAYHRTYGLDVRITRCCN 180
Query: 154 IYGPLNY-NPVEEWFFHRLKAGRPIPIPGSGIQVTQLGHVKDLARAFVQVLGNEKASRQV 212
YGP + + F L G +P+ G G V + H D R VL +A ++
Sbjct: 181 NYGPYQHPEKLIPLFVTNLLDGGTLPLYGDGANVREWVHTDDHCRGIALVLAGGRAG-EI 239
Query: 213 FNISGEKYVTFDGLARACAKAAGFPEPELVHYNPKEFDFGKKKAFPFRDQH---FFASVE 269
++I G +T L + G D+ + R H +
Sbjct: 240 YHIGGGLELTNRELTGILLDSLG-------------ADWSSVRKVADRKGHDLRYSLDGG 286
Query: 270 KAKHVLGWKPEFDLVEGLA 288
K + LG++P+ +GLA
Sbjct: 287 KIERELGYRPQVSFADGLA 305
>pdb|1VCT|A Chain A, Crystal Structure Of Putative Potassium Channel Related
Protein From Pyrococcus Horikoshii
pdb|2BKN|A Chain A, Structure Analysis Of Unknown Function Protein
pdb|2BKO|A Chain A, Structure Analysis Of Unknown Function Protein
pdb|2BKP|A Chain A, Structure Analysis Of Unknown Function Protein
Length = 205
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 34/56 (60%), Gaps = 11/56 (19%)
Query: 153 YIYGPLNYNPVEEWFFHRLKAGRPIPIPGSGIQVTQLGHVKDLARAFVQVLGNEKA 208
+I+GP N N +++AG + G G + T + H+K++AR ++V+GNE+A
Sbjct: 161 WIFGP-NEN-------FKIRAGDVLI--GRGTR-TSIDHLKEIARGAIRVIGNERA 205
>pdb|3SLG|A Chain A, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|B Chain B, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|C Chain C, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|D Chain D, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|E Chain E, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|F Chain F, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
Length = 372
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 62/162 (38%), Gaps = 16/162 (9%)
Query: 142 KGVNWTSLRPVYIYGP---LNYNPVE------EWFFHRLKAGRPIPIPGSGIQVTQLGHV 192
+G+N+T RP GP Y P E F + G I + G Q +V
Sbjct: 189 EGLNFTLFRPFNWIGPGLDSIYTPKEGSSRVVTQFLGHIVRGENISLVDGGSQKRAFTYV 248
Query: 193 KDLARAFVQVLGNEK--ASRQVFNISG--EKYVTFDGLARACAKAAGFPEPELVHYNPK- 247
D A ++++ N A+ +++NI + + + AA FPE K
Sbjct: 249 DDGISALMKIIENSNGVATGKIYNIGNPNNNFSVRELANKMLELAAEFPEYADSAKRVKL 308
Query: 248 -EFDFGKKKAFPFRD-QHFFASVEKAKHVLGWKPEFDLVEGL 287
E G ++D Q+ +E LGW P+F + L
Sbjct: 309 VETTSGAYYGNGYQDVQNRVPKIENTMQELGWAPQFTFDDAL 350
>pdb|1BXK|A Chain A, Dtdp-Glucose 4,6-Dehydratase From E. Coli
pdb|1BXK|B Chain B, Dtdp-Glucose 4,6-Dehydratase From E. Coli
Length = 355
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 173 AGRPIPIPGSGIQVTQLGHVKDLARAFVQVLGNEKASRQVFNISGEK 219
AG+ +P+ G+G Q+ +V+D ARA V K + +NI G
Sbjct: 210 AGKSLPVYGNGQQIRDWLYVEDHARALYCVATTGKVG-ETYNIGGHN 255
>pdb|1R66|A Chain A, Crystal Structure Of Desiv (Dtdp-Glucose 4,6-Dehydratase)
From Streptomyces Venezuelae With Nad And Tyd Bound
Length = 337
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 41/199 (20%), Positives = 73/199 (36%), Gaps = 23/199 (11%)
Query: 99 QFIYCSSAGVYLKSDLLPHCETDTVDPKSRHKGK-----LNTESVLESKGVNWTSLRPVY 153
+ ++ S+ VY D E+ ++P S + L + + G++ R
Sbjct: 121 RVVHVSTDEVYGSIDSGSWTESSPLEPNSPYAASKAGSDLVARAYHRTYGLDVRITRCCN 180
Query: 154 IYGPLNY-NPVEEWFFHRLKAGRPIPIPGSGIQVTQLGHVKDLARAFVQVLGNEKASRQV 212
YGP + + F L G +P+ G G V + H D R VL +A ++
Sbjct: 181 NYGPYQHPEKLIPLFVTNLLDGGTLPLYGDGANVREWVHTDDHCRGIALVLAGGRAG-EI 239
Query: 213 FNISGEKYVTFDGLARACAKAAGFPEPELVHYNPKEFDFGKKKAFPFRDQH---FFASVE 269
++I G +T L + G D+ + R H +
Sbjct: 240 YHIGGGLELTNRELTGILLDSLG-------------ADWSSVRKVADRKGHDLRYSLDGG 286
Query: 270 KAKHVLGWKPEFDLVEGLA 288
K + LG++P+ +GLA
Sbjct: 287 KIERELGYRPQVSFADGLA 305
>pdb|1UHT|A Chain A, Solution Structure Of The Fha Domain Of Arabidopsis
Thaliana Hypothetical Protein
Length = 118
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 5/74 (6%)
Query: 141 SKGVNWTSLRPVYIYGP-----LNYNPVEEWFFHRLKAGRPIPIPGSGIQVTQLGHVKDL 195
S G+ SLR V++ GP L+Y P R+ G I I +GI L D
Sbjct: 5 SSGMVTPSLRLVFVKGPREGDALDYKPGSTIRVGRIVRGNEIAIKDAGISTKHLRIESDS 64
Query: 196 ARAFVQVLGNEKAS 209
+Q LG+ +
Sbjct: 65 GNWVIQDLGSSNGT 78
>pdb|1NXT|A Chain A, Micarec Ph 4.0
pdb|2A9R|A Chain A, Rr02-Rec Phosphate In The Active Site
Length = 120
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 24/37 (64%)
Query: 50 KILHLKGDRKDYDFVKSSLSAKGFDVVYDINGREADE 86
KIL + ++ D +K +++ +G++VV NGREA E
Sbjct: 3 KILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALE 39
>pdb|3BWW|A Chain A, Crystal Structure Of A Duf692 Family Protein (Hs_1138)
From Haemophilus Somnus 129pt At 2.20 A Resolution
Length = 307
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 189 LGHVKDLARAFVQVLGNEKASRQVFNISGEKYVTFDGLARACAKAAGFPEPELVH 243
LG+ +DLA F+Q+ N++ Q I+ E ++ G AR P L+H
Sbjct: 8 LGYRRDLAEGFLQLRNNDRI--QFXEIAPENWIKXGGFARYQFDKVAEKIPILIH 60
>pdb|3QTG|A Chain A, Crystal Structure Of Pyruvate Kinase From Pyrobaculum
Aerophilum
pdb|3QTG|B Chain B, Crystal Structure Of Pyruvate Kinase From Pyrobaculum
Aerophilum
Length = 461
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 47/114 (41%), Gaps = 21/114 (18%)
Query: 24 LFTRGKAPIAQ------QLPGESDQEFAEFSSKI--------LHLKGDRKDYDFVKSSLS 69
+ T GKA + + P E D E + S I + L KD D V+S L+
Sbjct: 160 VITGGKAIVVEGKDYDISTPAEEDVEALKAISPIRDNIDYVAISLAKSCKDVDSVRSLLT 219
Query: 70 AKGFDVVYDINGREADEVEPILDALPNLEQFIYCSSAGVYLKSDLLPHCETDTV 123
GF + A ++E A+ NLE+ + CS V + DL H D +
Sbjct: 220 ELGF------QSQVAVKIE-TKGAVNNLEELVQCSDYVVVARGDLGLHYGLDAL 266
>pdb|1NXO|A Chain A, Micarec Ph7.0
pdb|1NXP|A Chain A, Micarec Ph4.5
pdb|1NXS|A Chain A, Micarec Ph4.9
pdb|1NXV|A Chain A, Micarec Ph 4.2
pdb|1NXW|A Chain A, Micarec Ph 5.1
pdb|1NXX|A Chain A, Micarec Ph 5.5
pdb|2A9O|A Chain A, Crystal Structures Of An Activated Yycf Homologue, The
Essential Response Regulator From S.Pneumoniae In
Complex With Bef3 And The Effect Of Ph On Bef3 Binding,
Possible Phosphate In The Active Site
pdb|2A9P|A Chain A, Medium Resolution Bef3 Bound Rr02-Rec
pdb|2A9Q|A Chain A, Low Resolution Structure Rr02-rec On Bef3 Bound
Length = 120
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 24/37 (64%)
Query: 50 KILHLKGDRKDYDFVKSSLSAKGFDVVYDINGREADE 86
KIL + ++ D +K +++ +G++VV NGREA E
Sbjct: 3 KILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALE 39
>pdb|3C1O|A Chain A, The Multiple Phenylpropene Synthases In Both Clarkia
Breweri And Petunia Hybrida Represent Two Distinct
Lineages
Length = 321
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 49/224 (21%), Positives = 93/224 (41%), Gaps = 35/224 (15%)
Query: 2 GGTRFIGVFLSRLLVKEGHQVTLFTRGKAPIAQQLPGESDQEFAEFSSKILHLKGDRKDY 61
GGT +IG F+ R + H ++ R P + + +EF I ++G+ +++
Sbjct: 11 GGTGYIGKFMVRASLSFSHPTFIYARPLTPDSTPSSVQLREEFRSMGVTI--IEGEMEEH 68
Query: 62 DFVKSSLSAKGFDVV-----YDINGREADEVEPILDALPNLEQFIYCSSAGVYLKSDLLP 116
+ + S L K D+V + + + + I A N+++F L SD
Sbjct: 69 EKMVSVL--KQVDIVISALPFPMISSQIHIINAI-KAAGNIKRF---------LPSDF-- 114
Query: 117 HCETDTVDPKSRHKGKLNTESVLESKGVNWTSLRPVYI-YGPLNYNPVEEWFFHRLKAGR 175
CE D + P ESVLE K + ++ + Y ++ N +F + L
Sbjct: 115 GCEEDRIKPLPPF------ESVLEKKRIIRRAIEAAALPYTYVSANCFGAYFVNYLLHPS 168
Query: 176 PIP-------IPGSGIQVTQLGHVKDLARAFVQVLGNEKASRQV 212
P P I G+G L + +D+A+ ++V + + ++
Sbjct: 169 PHPNRNDDIVIYGTGETKFVLNYEEDIAKYTIKVACDPRCCNRI 212
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.139 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,301,296
Number of Sequences: 62578
Number of extensions: 457097
Number of successful extensions: 1209
Number of sequences better than 100.0: 64
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 57
Number of HSP's that attempted gapping in prelim test: 1187
Number of HSP's gapped (non-prelim): 65
length of query: 321
length of database: 14,973,337
effective HSP length: 99
effective length of query: 222
effective length of database: 8,778,115
effective search space: 1948741530
effective search space used: 1948741530
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)