BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020797
(321 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SA52|CP41B_ARATH Chloroplast stem-loop binding protein of 41 kDa b, chloroplastic
OS=Arabidopsis thaliana GN=CSP41B PE=1 SV=1
Length = 378
Score = 613 bits (1581), Expect = e-175, Method: Compositional matrix adjust.
Identities = 286/320 (89%), Positives = 310/320 (96%)
Query: 1 MGGTRFIGVFLSRLLVKEGHQVTLFTRGKAPIAQQLPGESDQEFAEFSSKILHLKGDRKD 60
MGGTRFIG+FLSR+LVKEGHQVTLFTRGK+PIA+QLPGESDQ+FA+FSSKILHLKGDRKD
Sbjct: 59 MGGTRFIGLFLSRILVKEGHQVTLFTRGKSPIAKQLPGESDQDFADFSSKILHLKGDRKD 118
Query: 61 YDFVKSSLSAKGFDVVYDINGREADEVEPILDALPNLEQFIYCSSAGVYLKSDLLPHCET 120
YDFVKSSLSA+GFDVVYDINGREA+EVEPIL+ALP LEQ+IYCSSAGVYLKSD+LPHCE
Sbjct: 119 YDFVKSSLSAEGFDVVYDINGREAEEVEPILEALPKLEQYIYCSSAGVYLKSDILPHCEE 178
Query: 121 DTVDPKSRHKGKLNTESVLESKGVNWTSLRPVYIYGPLNYNPVEEWFFHRLKAGRPIPIP 180
D VDPKSRHKGKL TES+L+SKGVNWTS+RPVYIYGPLNYNPVEEWFFHRLKAGRPIP+P
Sbjct: 179 DAVDPKSRHKGKLETESLLQSKGVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPVP 238
Query: 181 GSGIQVTQLGHVKDLARAFVQVLGNEKASRQVFNISGEKYVTFDGLARACAKAAGFPEPE 240
SGIQ++QLGHVKDLA AF+ VLGNEKASR++FNISGEKYVTFDGLA+ACAKA GFPEPE
Sbjct: 239 NSGIQISQLGHVKDLATAFLNVLGNEKASREIFNISGEKYVTFDGLAKACAKAGGFPEPE 298
Query: 241 LVHYNPKEFDFGKKKAFPFRDQHFFASVEKAKHVLGWKPEFDLVEGLADSYNLDFGRGTY 300
+VHYNPKEFDFGKKKAFPFRDQHFFASVEKAKHVLGWKPEFDLVEGL DSYNLDFGRGT+
Sbjct: 299 IVHYNPKEFDFGKKKAFPFRDQHFFASVEKAKHVLGWKPEFDLVEGLTDSYNLDFGRGTF 358
Query: 301 RKEADFSTDDMILGKKLVLQ 320
RKEADF+TDDMIL KKLVLQ
Sbjct: 359 RKEADFTTDDMILSKKLVLQ 378
>sp|Q9LYA9|CP41A_ARATH Chloroplast stem-loop binding protein of 41 kDa a, chloroplastic
OS=Arabidopsis thaliana GN=CSP41A PE=1 SV=1
Length = 406
Score = 194 bits (494), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 116/318 (36%), Positives = 170/318 (53%), Gaps = 16/318 (5%)
Query: 2 GGTRFIGVFLSRLLVKEGHQVTLFTRGKAPIAQQLPGESDQEFAEFSSKILHLKGDRKDY 61
GG IG + ++ L+ GH VT+ T G ++++ F+E S G + +
Sbjct: 90 GGHAVIGFYFAKELLSAGHAVTILTVGDES-SEKMKKPPFNRFSEIVSG-----GGKTVW 143
Query: 62 DF---VKSSLSAKGFDVVYDINGREADEVEPILDALPN--LEQFIYCSSAGVYLKSDLLP 116
V + + + FDVV D NG++ D V P++D + ++QF++ SSAG+Y ++ P
Sbjct: 144 GNPANVANVVGGETFDVVLDNNGKDLDTVRPVVDWAKSSGVKQFLFISSAGIYKSTEQPP 203
Query: 117 HCETDTVDPKSRHKGKLNTESVLESKGVNWTSLRPVYIYGPLNYNPVEEWFFHRLKAGRP 176
H E D V + H + E L NW S RP Y+ G N EEWFF R+ R
Sbjct: 204 HVEGDAVKADAGH---VVVEKYLAETFGNWASFRPQYMIGSGNNKDCEEWFFDRIVRDRA 260
Query: 177 IPIPGSGIQVTQLGHVKDLARAFVQVLGN-EKASRQVFNISGEKYVTFDGLARACAKAAG 235
+PIPGSG+Q+T + HV+DL+ + N E AS +FN ++ VT DG+A+ CA AAG
Sbjct: 261 VPIPGSGLQLTNISHVRDLSSMLTSAVANPEAASGNIFNCVSDRAVTLDGMAKLCAAAAG 320
Query: 236 FPEPELVHYNPKEFDFGKKKAFPFRDQHFFASVEKAKHVLGWKPEFDLVEGLADSYNLDF 295
E+VHY+PK KKAF FR+ HF+A AK +LGW+ + +L E L + +
Sbjct: 321 -KTVEIVHYDPKAIGVDAKKAFLFRNMHFYAEPRAAKDLLGWESKTNLPEDLKERFEEYV 379
Query: 296 GRGTYRKEADFSTDDMIL 313
G +KE F DD IL
Sbjct: 380 KIGRDKKEIKFELDDKIL 397
>sp|Q45291|GALE_CORGL UDP-glucose 4-epimerase OS=Corynebacterium glutamicum (strain ATCC
13032 / DSM 20300 / JCM 1318 / LMG 3730 / NCIMB 10025)
GN=galE PE=3 SV=2
Length = 329
Score = 59.3 bits (142), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 83/320 (25%), Positives = 127/320 (39%), Gaps = 67/320 (20%)
Query: 2 GGTRFIGVFLSRLLVKEGHQVTLFTRGKAPIAQQLPGESDQEFAEFSSKILHLKGDRKDY 61
GG ++G + +L++ GH VT+ + +P ++ ++GD D
Sbjct: 7 GGAGYVGSVAAAVLLEHGHDVTIIDNFSTGNREAVPADARL-----------IEGDVND- 54
Query: 62 DFVKSSLSAKGFDVVYDINGRE--ADEVE--------------PILDAL--PNLEQFIYC 103
V+ LS GF+ V R + VE +LDA+ + ++
Sbjct: 55 -VVEEVLSEGGFEGVVHFAARSLVGESVEKPNEYWHDNVVTALTLLDAMRAHGVNNLVFS 113
Query: 104 SSAGVYLKSDLLPHCETDTVDPKSRHKG-KLNTESVLESK----GVNWTSLRPVYI---Y 155
S+A Y + D++P E P + + KL+ + + S G+ TSLR + Y
Sbjct: 114 STAATYGEPDVVPITEDMPTQPTNAYGATKLSIDYAITSYAAAFGLAATSLRYFNVAGAY 173
Query: 156 GPLNYN-PVEEWFF---------HRLKA---GRPIPIPGSGIQVTQLGHVKDLARAFVQV 202
G + N VE HR K G P P G V H+ DLA+A V
Sbjct: 174 GNIGENREVETHLIPLVLQVATGHREKTFMFGDDWPTP-DGTAVRDYIHILDLAKAHVLA 232
Query: 203 L-GNEKASRQVFNI-SGEKYVTFDGLARACAKAAGFPEPELVHYNPKEFDFGKKKAFPFR 260
L NE ++FN+ SG+ Y + + C + G P P V ++ P
Sbjct: 233 LESNEAGKHRIFNLGSGDGY-SVKQVVEMCREVTGHPIPAEV--------APRRAGDPAT 283
Query: 261 DQHFFASVEKAKHVLGWKPE 280
AS EKAK LGW PE
Sbjct: 284 ---LIASSEKAKQELGWTPE 300
>sp|P39630|RMLB_BACSU dTDP-glucose 4,6-dehydratase OS=Bacillus subtilis (strain 168)
GN=rfbB PE=1 SV=1
Length = 315
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 74/323 (22%), Positives = 122/323 (37%), Gaps = 63/323 (19%)
Query: 2 GGTRFIGVFLSRLLVKEGHQVTLFTRGKAPIAQQLPGESDQEFAEFSSKILHLKGDRKDY 61
GG FIG+ ++L+++E T + + +L +A ++ LK + + +
Sbjct: 9 GGAGFIGLTFTKLMLRE-------TDARITVLDKLT------YASHPEEMEKLKQNSR-F 54
Query: 62 DFVKSSLSA-----KGFDVVYD--IN-------GREADEVEPILDA-------------L 94
FVK +S + FD YD I+ R + EP +
Sbjct: 55 RFVKGDISVQEDIDRAFDETYDGVIHFAAESHVDRSISQAEPFITTNVMGTYRLAEAVLK 114
Query: 95 PNLEQFIYCSSAGVY--LKSDLLPHCETDTVDPKSRHKGKLNTESVLESKGVNWTSLRPV 152
++ I+ S+ VY LK+D ET + P + + + +L V L +
Sbjct: 115 GKAKKLIHISTDEVYGDLKADDPAFTETTPLSPNNPYSASKASSDLLVLSYVKTHKLPAI 174
Query: 153 YIYGPLNYNPVEE------WFFHRLKAGRPIPIPGSGIQVTQLGHVKDLARAFVQVLGNE 206
NY P + K G P+P+ G G+Q+ +D RA +L E
Sbjct: 175 ITRCSNNYGPYQHSEKMIPTIIRHAKQGLPVPLYGDGLQIRDWLFAEDHCRAIKLIL--E 232
Query: 207 KASR-QVFNISGEKYVTFDGLARACAKAAGFPEPELVHYNPKEFDFGKKKAFPFRDQHFF 265
K + +V+NI G T LA K G E F + D+ +
Sbjct: 233 KGTDGEVYNIGGGNERTNKELASVILKHLGCEEL-----------FAHVEDRKGHDRRYA 281
Query: 266 ASVEKAKHVLGWKPEFDLVEGLA 288
+ K K+ LGW+ E EG+A
Sbjct: 282 INASKLKNELGWRQEVTFEEGIA 304
>sp|Q6MWV3|GALE_MYCTU UDP-glucose 4-epimerase OS=Mycobacterium tuberculosis GN=galE1 PE=3
SV=1
Length = 314
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 79/315 (25%), Positives = 125/315 (39%), Gaps = 47/315 (14%)
Query: 1 MGGTRFIGVFLSRLLVKEGHQVT---LFTRGKAPIAQQLPGESDQEF--AEFSSKILH-- 53
G FIG L L+ +GH V F G+A + L S F A+ + LH
Sbjct: 6 TGAAGFIGSTLVDRLLADGHSVVGLDNFATGRATNLEHLADNSAHVFVEADIVTADLHAI 65
Query: 54 LKGDRKDYDF-------VKSSLSAKGFDVVYDING--READEVEPILDALPNLEQFIYCS 104
L+ R + F V+ S++ FD ++ G R A+ + + ++ S
Sbjct: 66 LEQHRPEVVFHLAAQIDVRRSVADPQFDAAVNVIGTVRLAEAARQT-----GVRKIVHTS 120
Query: 105 SAG-VYLKSDLLPHCETDTVDPKSRHK-GKLNTESVLES----KGVNWTSLRPVYIYGPL 158
S G +Y P ET DP S + GK+ E L + G++ + + P +YGP
Sbjct: 121 SGGSIYGTPPEYPTPETAPTDPASPYAAGKVAGEIYLNTFRHLYGLDCSHIAPANVYGP- 179
Query: 159 NYNP-----VEEWFFHRLKAGRPIPIPGSGIQVTQLGHVKDLARAFVQVLGNEKASRQVF 213
+P V F L +G+P + G G T+ D + + F
Sbjct: 180 RQDPHGEAGVVAIFAQALLSGKPTRVFGDGTN-TRDYVFVDDVVDAFVRVSADVGGGLRF 238
Query: 214 NISGEKYVTFDGLARACAKAAGFPE-PELVHYNPKEFDFGKKKAFPFRDQHFFASVEKAK 272
NI K + L A A A G P+ PE ++P K+ + A+
Sbjct: 239 NIGTGKETSDRQLHSAVAAAVGGPDDPE---FHPPRLGDLKRSCL---------DIGLAE 286
Query: 273 HVLGWKPEFDLVEGL 287
VLGW+P+ +L +G+
Sbjct: 287 RVLGWRPQIELADGV 301
>sp|O06485|YFNG_BACSU Putative sugar dehydratase/epimerase YfnG OS=Bacillus subtilis
(strain 168) GN=yfnG PE=3 SV=2
Length = 322
Score = 48.5 bits (114), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 69/315 (21%), Positives = 124/315 (39%), Gaps = 47/315 (14%)
Query: 2 GGTRFIGVFLSRLLVKEGHQVTLFTRGKAPIAQQLPGESDQEFAEFSSKILHLKGDRKDY 61
G T +G +L + L+++G VT R P + GE + K+ ++G +D
Sbjct: 13 GCTGLLGSYLVKELIEQGANVTGLVRDHVPQSNLYQGEHIK-------KMNIVRGSLEDL 65
Query: 62 DFVKSSLSAKGFDVVYDINGR--------------EADEVEP--ILDAL---PNLEQFIY 102
++ +L D V+ + + EA+ + IL+A P +++ I
Sbjct: 66 AVIERALGEYEIDTVFHLAAQAIVGVANRNPISTFEANILGTWNILEACRKHPLIKRVIV 125
Query: 103 CSSAGVYLKSDLLPHCETDTVDPK-----SRHKGKLNTESVLESKG--VNWTSLRPVYIY 155
SS Y + LP+ E + K S+ L + + + G V T +Y
Sbjct: 126 ASSDKAYGDQENLPYDENMPLQGKHPYDVSKSCADLISHTYFHTYGLPVCITRCGNLYGG 185
Query: 156 GPLNYNPVEEWFFHRLKAGRPIPIPGSGIQVTQLGHVKDLARAFVQV---LGNEKASRQV 212
G LN+N + + G I G V +++D +A++ + + + +
Sbjct: 186 GDLNFNRIIPQTIQLVLNGEAPEIRSDGTFVRDYFYIEDAVQAYLLLAEKMEENNLAGEA 245
Query: 213 FNISGEKYVTFDGLARACAKAAGFPEPELVHYNPKEFDFGKKKAFPFRDQHFFASVEKAK 272
FN S E +T L K + PK + G + +H + S EKA+
Sbjct: 246 FNFSNEIQLTVLELVEKILKKMN------SNLKPKVLNQGSNEI-----KHQYLSAEKAR 294
Query: 273 HVLGWKPEFDLVEGL 287
+L W P + + EGL
Sbjct: 295 KLLNWTPAYTIDEGL 309
>sp|A0R5C5|GALE_MYCS2 UDP-glucose 4-epimerase OS=Mycobacterium smegmatis (strain ATCC
700084 / mc(2)155) GN=MSMEG_6142 PE=1 SV=2
Length = 313
Score = 48.1 bits (113), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 84/323 (26%), Positives = 118/323 (36%), Gaps = 59/323 (18%)
Query: 2 GGTRFIGVFLSRLLVKEGHQVTLFTRGKAPIAQQLPGESDQEFAEFSSKILHLKGDRKDY 61
G FIG L L+ +GH V + A+ L AE S K +K D D
Sbjct: 7 GAAGFIGSTLVDRLLADGHGVVGLDDLSSGRAENL------HSAENSDKFEFVKADIVDA 60
Query: 62 DF--------------------VKSSLSAKGFDVVYDING--READEVEPILDALPNLEQ 99
D VK S+ FD ++ G R A+ L + +
Sbjct: 61 DLTGLLAEFKPEVIFHLAAQISVKRSVDDPPFDATVNVVGTVRLAEAAR-----LAGVRK 115
Query: 100 FIYCSSAG-VYLKSDLLPHCETDTVDPKSRHK-GKLNTESVLESK----GVNWTSLRPVY 153
++ SS G VY P E V+P S + GK+ E L ++ + + P
Sbjct: 116 VVHTSSGGSVYGTPPAYPTSEDMPVNPASPYAAGKVAGEVYLNMYRNLYDLDCSHIAPAN 175
Query: 154 IYGPLNYNP-----VEEWFFHRLKAGRPIPIPGSGIQVTQLGHVKDLARAFVQVLGNEKA 208
+YGP +P V F L AGR I G G T+ D G
Sbjct: 176 VYGP-RQDPHGEAGVVAIFSEALLAGRTTKIFGDGSD-TRDYVFVDDVVDAFVRAGGPAG 233
Query: 209 SRQVFNISGEKYVTFDGLARACAKAAGFP-EPELVHYNPKEFDFGKKKAFPFRDQHFFAS 267
Q FN+ + L A A A G P EPE + P+ D + + R
Sbjct: 234 GGQRFNVGTGVETSTRELHTAIAGAVGAPDEPEF--HPPRLGDLRRSRLDNTR------- 284
Query: 268 VEKAKHVLGWKPEFDLVEGLADS 290
A+ VLGW+P+ L EG+A +
Sbjct: 285 ---AREVLGWQPQVALAEGIAKT 304
>sp|P33119|GALE_CORDI UDP-glucose 4-epimerase OS=Corynebacterium diphtheriae (strain ATCC
700971 / NCTC 13129 / Biotype gravis) GN=galE PE=3 SV=2
Length = 328
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 83/338 (24%), Positives = 132/338 (39%), Gaps = 80/338 (23%)
Query: 2 GGTRFIGVFLSRLLVKEGHQVTLF------TRGKAPIAQQLPGESDQEFAEFSSKILHLK 55
GG ++G S +L+++GH+VT+ R P+ ++
Sbjct: 7 GGAGYVGSVCSTVLLEQGHEVTIVDNLTTGNRDAVPLGATF-----------------VE 49
Query: 56 GDRKDYDFVKSSLSAKGFDVVYDINGRE--ADEVE--------------PILDALP--NL 97
GD K D + LS+ FD V R + VE +LDA+ N+
Sbjct: 50 GDIK--DVADNVLSSDSFDAVLHFAARSLVGESVEKPDEYWQHNMVTTLALLDAMKRNNV 107
Query: 98 EQFIYCSSAGVYLKSDLLPHCETDTVDPKSRHKG-KLNTESVLES----KGVNWTSLRPV 152
++ S+A Y + + +P E P + + KL+ + + S G TSLR
Sbjct: 108 RNIVFSSTAATYGEPETVPITEDAPTHPTNPYGATKLSIDYAITSYAHAYGFAATSLRYF 167
Query: 153 YI---YGPLNYNPVEEWFF----------HRLKA---GRPIPIPGSGIQVTQLGHVKDLA 196
+ YG + N E HR K G P G + H++DLA
Sbjct: 168 NVAGAYGLVGENREIETHLIPLVLQVALGHRDKIFMFGDDWPTE-DGTPIRDYIHIRDLA 226
Query: 197 RAFVQVL-GNEKASRQVFNI-SGEKYVTFDGLARACAKAAGFPEPELVHYNPKEFDFGKK 254
A + L N + S ++FN+ SGE Y + + C + G H P E ++
Sbjct: 227 DAHILALQSNVEGSHRIFNLGSGEGY-SVKQVIDTCREVTG-------HLIPAEV-APRR 277
Query: 255 KAFPFRDQHFFASVEKAKHVLGWKPE-FDLVEGLADSY 291
P AS KA+ LGWKP+ DL ++D++
Sbjct: 278 AGDPAV---LIASSAKAQSELGWKPQRTDLHTIVSDAW 312
>sp|Q57664|GALE_METJA Putative UDP-glucose 4-epimerase OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ0211 PE=3 SV=1
Length = 305
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 70/311 (22%), Positives = 121/311 (38%), Gaps = 49/311 (15%)
Query: 2 GGTRFIGVFLSRLLVKEGHQVTLFTRGKAPIAQQLPGESDQEFAEFSSKILHLKGDRKDY 61
GG FIG + L++ + V + + +++ A+ K L K + KD
Sbjct: 6 GGAGFIGSHIVDKLIENNYDVIILDNLTTGNKNNINPKAEFVNADIRDKDLDEKINFKDV 65
Query: 62 DFVKSSLSAKGFDVVYDINGREADEVEPILDALPN---------------LEQFIYCSSA 106
+ V + IN R + E P+ D N +++ ++ SS
Sbjct: 66 EVVIHQAAQ--------INVRNSVE-NPVYDGDINVLGTINILEMMRKYDIDKIVFASSG 116
Query: 107 G-VYLKSDLLPHCETDTVDPKS-----RHKGKLNTESVLESKGVNWTSLRPVYIYG---- 156
G VY + + LP E ++P S ++ G+ + G+ + LR +YG
Sbjct: 117 GAVYGEPNYLPVDENHPINPLSPYGLSKYVGEEYIKLYNRLYGIEYAILRYSNVYGERQD 176
Query: 157 PLNYNPVEEWFFHRLKAGRPIPIPGSGIQVTQLGHVKDLARAFVQVLGNEKASRQVFNIS 216
P V F ++ + I G G Q +V D+A+A + L ++ NI
Sbjct: 177 PKGEAGVISIFIDKMLKNQSPIIFGDGNQTRDFVYVGDVAKANLMAL---NWKNEIVNIG 233
Query: 217 GEKYVTFDGLARACAKAAGFPEPELVHYNPKEFDFGKKKAFPFRDQHFFASVEKAKHVLG 276
K + + L GF E ++ P+E + + ++KA+ LG
Sbjct: 234 TGKETSVNELFDIIKHEIGF-RGEAIYDKPREGEV----------YRIYLDIKKAES-LG 281
Query: 277 WKPEFDLVEGL 287
WKPE DL EG+
Sbjct: 282 WKPEIDLKEGI 292
>sp|P55579|Y4NG_RHISN Uncharacterized protein y4nG OS=Rhizobium sp. (strain NGR234)
GN=NGR_a02350 PE=4 SV=1
Length = 396
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 72/323 (22%), Positives = 125/323 (38%), Gaps = 52/323 (16%)
Query: 2 GGTRFIGVFLSRLLVKEGHQVTLFTRGKAPIAQQLPGESDQEFAEFSSKILHLKGDRKDY 61
GG+ + G LS+ L+++G V +F PG S EF LKG D
Sbjct: 56 GGSGYFGELLSKQLLRQGTYVRVFDLNP-------PGFSHPNL-EF------LKGTILDR 101
Query: 62 DFVKSSLS--------------AKGFDVVYDINGREADEVEPILD--ALPNLEQFIYCSS 105
+ V+ +LS AK D+ + +N + I+D +E+F+Y SS
Sbjct: 102 NAVRQALSGIDKVFHNVAQVPLAKEKDLFWSVN---CGGTQIIVDESVATGIEKFVYTSS 158
Query: 106 AGVYLKSDLLPHCETDTVDP-----KSRHKGKLNTESVLESKGVNWTSLRPVYIYGPLNY 160
+ V+ P E +P +++ G++ + ++ G++ +RP + G
Sbjct: 159 SAVFGAPKSNPVTEETEPNPAEDYGRAKLAGEIICKEAMQRDGLDVAIVRPRTVLG-YGR 217
Query: 161 NPVEEWFFHRLKAGRPIPIPGSGIQVTQLGHVKDLARAFVQVLGNEKASRQVFNISGEKY 220
V + F ++ G IP+ G G Q H DLA A + N K +NI ++
Sbjct: 218 QGVVQILFDWVERGLDIPVLGGGNNKYQFVHSDDLASACIAA-SNVKGF-ATYNIGAAEF 275
Query: 221 VTFDGLARACAKAA-------GFPEPELVHYNPKEFDFGKKKAFPFRD----QHFFASVE 269
T L + K A P G P+ + + +
Sbjct: 276 GTMRELLQVVIKHAETGSRIKSIPMGPTALAANLASALGLSPLGPYHSLMYGRAMYFDIS 335
Query: 270 KAKHVLGWKPEFDLVEGLADSYN 292
KA+ LG+ P + + + ++YN
Sbjct: 336 KAQKELGYAPRYSNSQMMIETYN 358
>sp|Q5PQX0|UXS1_RAT UDP-glucuronic acid decarboxylase 1 OS=Rattus norvegicus GN=Uxs1
PE=1 SV=1
Length = 420
Score = 44.7 bits (104), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 71/331 (21%), Positives = 138/331 (41%), Gaps = 36/331 (10%)
Query: 2 GGTRFIGVFLSRLLVKEGHQVTL----FTRGKAPIAQQLPGESDQEFAEFSSKILHLKGD 57
GG F+G L+ L+ +GH+VT+ FT K + + E+ + + L+++ D
Sbjct: 95 GGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPLYIEVD 154
Query: 58 RKDYDFVKSSLSAKGFDVVYDINGREADEVEPILDALPNLEQFIYCSSAGVYLKSDLLPH 117
+ + +S ++ + + + + A + + S++ VY ++ P
Sbjct: 155 QIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGDPEVHPQ 214
Query: 118 CE-----TDTVDPKSRH-KGKLNTESV----LESKGVNWTSLRPVYIYGP---LNYNPVE 164
E + + P++ + +GK E++ ++ +GV R +GP +N V
Sbjct: 215 SEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMNDGRVV 274
Query: 165 EWFFHRLKAGRPIPIPGSGIQVTQLGHVKDLARAFVQVLGNEKASRQVFNISGEKYVTFD 224
F + G P+ + GSG Q +V DL V ++ N S V N+ + T
Sbjct: 275 SNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALM-NSNVSSPV-NLGNPEEHTIL 332
Query: 225 GLARACAKAAGFPEPELVHYNPKEFDFGKKKAFPFRDQHFFASVEKAKHVLGWKPEFDLV 284
A+ G E+ + + D K+K ++KAK +LGW+P L
Sbjct: 333 EFAQLIKNLVG-SGSEIQFLSEAQDDPQKRKP----------DIKKAKLMLGWEPVVPLE 381
Query: 285 EGLADSYNLDFGRGTYRKEADFSTDDMILGK 315
EGL + + +RKE ++ ++ + K
Sbjct: 382 EGLNKAIHY------FRKELEYQANNQYIPK 406
>sp|Q91XL3|UXS1_MOUSE UDP-glucuronic acid decarboxylase 1 OS=Mus musculus GN=Uxs1 PE=2
SV=1
Length = 420
Score = 44.7 bits (104), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 70/340 (20%), Positives = 136/340 (40%), Gaps = 54/340 (15%)
Query: 2 GGTRFIGVFLSRLLVKEGHQVTL---FTRGKAPIAQQLPGESDQEFAEFS---------S 49
GG F+G L+ L+ +GH+VT+ F G+ + G + E
Sbjct: 95 GGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPLYIEVD 154
Query: 50 KILHLKGDRKDYDFVKSSLSAKGFDVVYDINGREADEVEPILDALPNL-EQFIYCSSAGV 108
+I HL +++ + + + + +N +L + + + S++ V
Sbjct: 155 QIYHLASPASPPNYMYNPIKTLKTNTIGTLN---------MLGLAKRVGARLLLASTSEV 205
Query: 109 YLKSDLLPHCE-----TDTVDPKSRH-KGKLNTESV----LESKGVNWTSLRPVYIYGP- 157
Y ++ P E + + P++ + +GK E++ ++ +GV R +GP
Sbjct: 206 YGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPR 265
Query: 158 --LNYNPVEEWFFHRLKAGRPIPIPGSGIQVTQLGHVKDLARAFVQVLGNEKASRQVFNI 215
+N V F + G P+ + GSG Q +V DL V ++ + +S N+
Sbjct: 266 MHMNDGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSNVSSP--VNL 323
Query: 216 SGEKYVTFDGLARACAKAAGFPEPELVHYNPKEFDFGKKKAFPFRDQHFFASVEKAKHVL 275
+ T A+ G E+ + + D K+K ++KAK +L
Sbjct: 324 GNPEEHTILEFAQLIKNLVG-SGSEIQFLSEAQDDPQKRKP----------DIKKAKLML 372
Query: 276 GWKPEFDLVEGLADSYNLDFGRGTYRKEADFSTDDMILGK 315
GW+P L EGL + + +RKE ++ ++ + K
Sbjct: 373 GWEPVVPLEEGLNKAIHY------FRKELEYQANNQYIPK 406
>sp|Q5R885|UXS1_PONAB UDP-glucuronic acid decarboxylase 1 OS=Pongo abelii GN=UXS1 PE=2
SV=1
Length = 420
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 70/340 (20%), Positives = 136/340 (40%), Gaps = 54/340 (15%)
Query: 2 GGTRFIGVFLSRLLVKEGHQVTL---FTRGKAPIAQQLPGESDQEFAEFS---------S 49
GG F+G L+ L+ +GH+VT+ F G+ + G + E
Sbjct: 95 GGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPLYIEVD 154
Query: 50 KILHLKGDRKDYDFVKSSLSAKGFDVVYDINGREADEVEPILDALPNL-EQFIYCSSAGV 108
+I HL +++ + + + + +N +L + + + S++ V
Sbjct: 155 QIYHLASPASPPNYMYNPIKTLKTNTIGTLN---------MLGLAKRVGARLLLASTSEV 205
Query: 109 YLKSDLLPHCE-----TDTVDPKSRH-KGKLNTESV----LESKGVNWTSLRPVYIYGP- 157
Y ++ P E + + P++ + +GK E++ ++ +GV R +GP
Sbjct: 206 YGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPR 265
Query: 158 --LNYNPVEEWFFHRLKAGRPIPIPGSGIQVTQLGHVKDLARAFVQVLGNEKASRQVFNI 215
+N V F + G P+ + GSG Q +V DL V ++ + +S N+
Sbjct: 266 MHMNDGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSNVSSP--VNL 323
Query: 216 SGEKYVTFDGLARACAKAAGFPEPELVHYNPKEFDFGKKKAFPFRDQHFFASVEKAKHVL 275
+ T A+ G E+ + + D K+K ++KAK +L
Sbjct: 324 GNPEEHTILEFAQLIKNLVG-SGSEIQFLSEAQDDPQKRKP----------DIKKAKLML 372
Query: 276 GWKPEFDLVEGLADSYNLDFGRGTYRKEADFSTDDMILGK 315
GW+P L EGL + + +RKE ++ ++ + K
Sbjct: 373 GWEPVVPLEEGLNKAIHY------FRKELEYQANNQYIPK 406
>sp|Q9ZAE8|RMLB_ACTS5 dTDP-glucose 4,6-dehydratase OS=Actinoplanes sp. (strain ATCC 31044
/ CBS 674.73 / SE50/110) GN=acbB PE=3 SV=2
Length = 320
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 93/235 (39%), Gaps = 24/235 (10%)
Query: 64 VKSSLSAKGFDVVYDINGREADEVEPILDAL--PNLEQFIYCSSAGVYLKSDLLPHCETD 121
V S+ A G V ++ G + +LDA ++ +F++ S+ VY D E
Sbjct: 90 VDRSVVASGPFVASNLVGTQV-----LLDAALRHHIGRFLHVSTDEVYGSIDTGSWAEGH 144
Query: 122 TVDPKSRHKGKLNTESVL-----ESKGVNWTSLRPVYIYGPLNY-NPVEEWFFHRLKAGR 175
+ P S + +L ++ G++ R YGP + + F RL G
Sbjct: 145 PLAPNSPYAASKAGSDLLALAYHQTHGMDVVVTRCSNNYGPRQFPEKMIPLFVTRLLDGL 204
Query: 176 PIPIPGSGIQVTQLGHVKDLARAFVQVLGNEKASRQVFNISGEKYVTFDGLARACAKAAG 235
+P+ G G + HV D R LG +A +V++I G T L +A G
Sbjct: 205 DVPVYGDGRNIRDWLHVSDHCRGLALALGAGRAG-EVYHIGGGWEATNLELTEILLEACG 263
Query: 236 FPEPELVHYNPKEFDFGKKKAFPFRDQHFFASVEKAKHVLGWKPEFDLVEGLADS 290
P + F +K D+ + K LG++P D +G+A++
Sbjct: 264 APASRI------SFVTDRKG----HDRRYSLDYSKIAGELGYRPRVDFTDGIAET 308
>sp|Q8NBZ7|UXS1_HUMAN UDP-glucuronic acid decarboxylase 1 OS=Homo sapiens GN=UXS1 PE=1
SV=1
Length = 420
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 70/340 (20%), Positives = 136/340 (40%), Gaps = 54/340 (15%)
Query: 2 GGTRFIGVFLSRLLVKEGHQVTL---FTRGKAPIAQQLPGESDQEFAEFS---------S 49
GG F+G L+ L+ +GH+VT+ F G+ + G + E
Sbjct: 95 GGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPLYIEVD 154
Query: 50 KILHLKGDRKDYDFVKSSLSAKGFDVVYDINGREADEVEPILDALPNL-EQFIYCSSAGV 108
+I HL +++ + + + + +N +L + + + S++ V
Sbjct: 155 QIYHLASPASPPNYMYNPIKTLKTNTIGTLN---------MLGLAKRVGARLLLASTSEV 205
Query: 109 YLKSDLLPHCE-----TDTVDPKSRH-KGKLNTESV----LESKGVNWTSLRPVYIYGP- 157
Y ++ P E + + P++ + +GK E++ ++ +GV R +GP
Sbjct: 206 YGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPR 265
Query: 158 --LNYNPVEEWFFHRLKAGRPIPIPGSGIQVTQLGHVKDLARAFVQVLGNEKASRQVFNI 215
+N V F + G P+ + GSG Q +V DL V ++ + +S N+
Sbjct: 266 MHMNDGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSNVSSP--VNL 323
Query: 216 SGEKYVTFDGLARACAKAAGFPEPELVHYNPKEFDFGKKKAFPFRDQHFFASVEKAKHVL 275
+ T A+ G E+ + + D K+K ++KAK +L
Sbjct: 324 GNPEEHTILEFAQLIKNLVG-SGSEIQFLSEAQDDPQKRKP----------DIKKAKLML 372
Query: 276 GWKPEFDLVEGLADSYNLDFGRGTYRKEADFSTDDMILGK 315
GW+P L EGL + + +RKE ++ ++ + K
Sbjct: 373 GWEPVVPLEEGLNKAIHY------FRKELEYQANNQYIPK 406
>sp|P52577|IFRH_ARATH Isoflavone reductase homolog P3 OS=Arabidopsis thaliana
GN=At1g75280 PE=1 SV=1
Length = 310
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 67/149 (44%), Gaps = 12/149 (8%)
Query: 1 MGGTRFIGVFLSRLLVKEGHQVTLFTRGKAPIAQQLPGESDQEFAEFSSKILHLKGDRKD 60
+GGT +IG FL K GH R +A ++ + G++ Q F + ILH GD D
Sbjct: 11 IGGTGYIGKFLVEASAKAGHSTFALVR-EATLSDPVKGKTVQSFKDLGVTILH--GDLND 67
Query: 61 YDFVKSSLSAKGFDVVYDINGREADEVEPILDALPNLEQFIYCSSAGVYLKSDLLPHCE- 119
++ + ++ K DVV G ILD + + +L S+ +
Sbjct: 68 HESLVKAI--KQVDVVISTVGSMQ-----ILDQTKIISAIKEAGNVKRFLPSEFGVDVDR 120
Query: 120 TDTVDP-KSRHKGKLNTESVLESKGVNWT 147
T V+P KS GK+ +E++G+ +T
Sbjct: 121 TSAVEPAKSAFAGKIQIRRTIEAEGIPYT 149
>sp|P32055|FCL_ECOLI GDP-L-fucose synthase OS=Escherichia coli (strain K12) GN=fcl PE=1
SV=2
Length = 321
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 70/305 (22%), Positives = 113/305 (37%), Gaps = 55/305 (18%)
Query: 30 APIAQQLPGESDQEFAEFSSKILHLKGDRKDYDFVKSSLSAKGFDVVYDINGREADEVEP 89
+ I +QL D E + L+L R +DF S + + + G A+ P
Sbjct: 17 SAIRRQLEQRGDVELVLRTRDELNLLDSRAVHDFFASERIDQVYLAAAKVGGIVANNTYP 76
Query: 90 -------------ILDAL--PNLEQFIYCSSAGVYLKSDLLPHCETD----TVDPK---- 126
I+ A ++ + ++ S+ +Y K P E++ T++P
Sbjct: 77 ADFIYQNMMIESNIIHAAHQNDVNKLLFLGSSCIYPKLAKQPMAESELLQGTLEPTNEPY 136
Query: 127 --SRHKGKLNTESVLESKGVNWTSLRPVYIYGPL-NYNPVEEWF-------FHRLKAGRP 176
++ G ES G ++ S+ P +YGP N++P FH A
Sbjct: 137 AIAKIAGIKLCESYNRQYGRDYRSVMPTNLYGPHDNFHPSNSHVIPALLRRFHEATAQNA 196
Query: 177 --IPIPGSGIQVTQLGHVKDLARAFVQV--------LGNEKASRQVFNISGEKYVTFDGL 226
+ + GSG + + HV D+A A + V L N + N+ T L
Sbjct: 197 PDVVVWGSGTPMREFLHVDDMAAASIHVMELAHEVWLENTQPMLSHINVGTGVDCTIREL 256
Query: 227 ARACAKAAGFPEPELVHYNPKEFDFGKKKAFPFRDQHFFASVEKAKHVLGWKPEFDLVEG 286
A+ AK G+ + FD K P + V + H LGW E L G
Sbjct: 257 AQTIAKVVGYKGRVV-------FDASKPDGTPRK----LLDVTRL-HQLGWYHEISLEAG 304
Query: 287 LADSY 291
LA +Y
Sbjct: 305 LASTY 309
>sp|Q9LPG6|RHM2_ARATH Probable rhamnose biosynthetic enzyme 2 OS=Arabidopsis thaliana
GN=RHM2 PE=1 SV=1
Length = 667
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 87/200 (43%), Gaps = 20/200 (10%)
Query: 97 LEQFIYCSSAGVYLKSD---LLPHCETDTVDPKSRHKGKLNTESVL-----ESKGVNWTS 148
+ +FI+ S+ VY ++D + + E + P + + +L S G+ +
Sbjct: 126 IRRFIHVSTDEVYGETDEDAAVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVIT 185
Query: 149 LRPVYIYGPLNY-NPVEEWFFHRLKAGRPIPIPGSGIQVTQLGHVKDLARAFVQVLGNEK 207
R +YGP + + F +G+P+PI G G V + +D+A AF VL +
Sbjct: 186 TRGNNVYGPNQFPEKMIPKFILLAMSGKPLPIHGDGSNVRSYLYCEDVAEAFEVVLHKGE 245
Query: 208 ASRQVFNISGEKYVTFDGLARACAKAAGFPEPELVHYNPKEFDFGKKKAFPFRDQHFFAS 267
V+N+ ++ +AR K G +PE F + + PF DQ +F
Sbjct: 246 IG-HVYNVGTKRERRVIDVARDICKLFG-KDPE------SSIQFVENR--PFNDQRYFLD 295
Query: 268 VEKAKHVLGWKPEFDLVEGL 287
+K K LGW+ + +GL
Sbjct: 296 DQKLKK-LGWQERTNWEDGL 314
>sp|Q9LH76|RHM3_ARATH Probable rhamnose biosynthetic enzyme 3 OS=Arabidopsis thaliana
GN=RHM3 PE=1 SV=1
Length = 664
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 75/187 (40%), Gaps = 20/187 (10%)
Query: 104 SSAGVYLKSDLLPHCETDTVDPKSRHKG--KLNTESVLESKGVNWTSLRPVYIYGPLNY- 160
+S G + S LLP +P S K ++ + S G+ + R +YGP +
Sbjct: 143 ASVGNHEASQLLP------TNPYSATKAGAEMLVMAYGRSYGLPVITTRGNNVYGPNQFP 196
Query: 161 NPVEEWFFHRLKAGRPIPIPGSGIQVTQLGHVKDLARAFVQVLGNEKASRQVFNISGEKY 220
+ F G+P+PI G G V + +D+A AF VL + + V+NI +
Sbjct: 197 EKLIPKFILLAMNGKPLPIHGDGSNVRSYLYCEDVAEAFEVVLHKGEVN-HVYNIGTTRE 255
Query: 221 VTFDGLARACAKAAGFPEPELVHYNPKEFDFGKKKAFPFRDQHFFASVEKAKHVLGWKPE 280
+A +K G + Y PF DQ +F +K K LGW
Sbjct: 256 RRVIDVANDISKLFGIDPDSTIQYVENR---------PFNDQRYFLDDQKLKK-LGWCER 305
Query: 281 FDLVEGL 287
+ EGL
Sbjct: 306 TNWEEGL 312
>sp|Q12177|YL056_YEAST Uncharacterized protein YLL056C OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=YLL056C PE=2 SV=1
Length = 298
Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 76/317 (23%), Positives = 130/317 (41%), Gaps = 49/317 (15%)
Query: 2 GGTRFIGVFLSRLLVKEGHQVTLFTRGKAPIAQQLPGESDQEFAEFSS-----KILHLKG 56
G + FIG + L+ GH+V R SD+ A+ S KI L+G
Sbjct: 7 GASGFIGSAVLSELISSGHEVVGLAR------------SDEAAAKIKSIDPAAKI--LRG 52
Query: 57 DRKDYDFVKSSLSA-------------KGFDVVYDINGREADEVEPILDALPNLEQFIYC 103
D KD + +K + K F+ +I+ R+A +L++L +
Sbjct: 53 DLKDLEILKKGATESDGVIHLGFVHDFKNFEQCCEID-RQA--TVAMLESLKGSNKPFLY 109
Query: 104 SSAGVYLKSDLLPHCETDTVDPKSRHKGKLNTESVL--ESKGVNWTSLR-PVYIYGPLN- 159
++ + L+ + + + E D +D S+ + + L + KGV+ +R P ++G +
Sbjct: 110 TNGTLSLRPNKVAN-EQDGIDEDSKILRAVTEQVALSYKDKGVSARIVRLPFSVHGKGDK 168
Query: 160 -YNPVEEWFFHRLKAGRPIPIPGSGIQVTQLGHVKDLARAFVQVLGNEKASRQVFNISGE 218
+ P+ + KA G G H D A F VL K QV++ GE
Sbjct: 169 AFVPI---LMNIAKAAGKSGYVGQGTNAWAAVHRLDTAPLFRLVLEKGKTG-QVYHCVGE 224
Query: 219 KYVTFDGLARACAKAAGFPEPELVHYNPKEFDFGKKKAFPFRDQHFFASVEKAKHVLGWK 278
+ + F +AR + P + + E FG F RD S E + LGW+
Sbjct: 225 QGIPFKDIARVIGEILNVPVAS-IPVDDAESHFGFLTCFVTRDGPV--SSEGTRKELGWQ 281
Query: 279 P-EFDLVEGLADSYNLD 294
P + L+E + +Y+L+
Sbjct: 282 PQQIGLLEDIRANYSLN 298
>sp|O43050|ERG26_SCHPO Sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=erg26 PE=3 SV=1
Length = 340
Score = 41.6 bits (96), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 62/248 (25%), Positives = 109/248 (43%), Gaps = 41/248 (16%)
Query: 74 DVVYDINGREADEVEPILDALP--NLEQFIYCSSAGVYLK-SDLLPHCETDTV-----DP 125
D+ +++N D I+ A N++ +Y SSAGV +DL+ E+ + D
Sbjct: 87 DIYFEVN---VDGTANIIKACQKFNVDALVYTSSAGVVFNGADLINVDESQPIPEVHMDA 143
Query: 126 KSRHKGKLNTESVLE--SKGVNWTSLRPVYIYGPLNYNPVEEWFFHRLKAGRPIPIPGSG 183
+ K L + VLE S+ + +LR ++GP + V LK G+ G
Sbjct: 144 YNESKA-LAEKQVLEASSESLKTAALRVAGLFGPGDRQLVPG-MLSVLKNGQTKFQLGDN 201
Query: 184 IQVTQLGHVKDLARAFVQVL-----GNEKASRQVFNISGEKYVTFDGLARACAKAAG--- 235
+ + ++++ A A + + N A+ QVF I+ + + F ARA AG
Sbjct: 202 LNLFDFTYIENAAYAHLLAMDNLLSSNPTANGQVFFITNGQVIYFWDFARAIWAHAGHVP 261
Query: 236 -----FPEPE----------LVHYNPKEFDFGK-KKAFPFRDQHFFASVEKAKHVLGWKP 279
FP P + ++ KE F + + F +++F +++KA+ VL + P
Sbjct: 262 PYIIKFPRPVGMLLATAAEWVCYFLKKEPGFTRFRVQFSCANRYF--NIQKAEDVLKYHP 319
Query: 280 EFDLVEGL 287
DL EG+
Sbjct: 320 IVDLEEGI 327
>sp|Q6DF08|UXS1_XENTR UDP-glucuronic acid decarboxylase 1 OS=Xenopus tropicalis GN=uxs1
PE=2 SV=1
Length = 421
Score = 41.2 bits (95), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 69/341 (20%), Positives = 134/341 (39%), Gaps = 56/341 (16%)
Query: 2 GGTRFIGVFLSRLLVKEGHQVTL---FTRGKAPIAQQLPGESDQEFAEFS---------S 49
GG F+G L+ L+ +GH+VT+ F G+ + G + E
Sbjct: 96 GGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPLYIEVD 155
Query: 50 KILHLKGDRKDYDFVKSSLSAKGFDVVYDINGREADEVEPILDALPNL-EQFIYCSSAGV 108
+I HL +++ + + + + +N +L + + + S++ V
Sbjct: 156 QIYHLASPASPPNYMYNPIKTLKTNTIGTLN---------MLGLAKRVGARLLLASTSEV 206
Query: 109 YLKSDLLPHCE-----TDTVDPKSRH-KGKLNTESV----LESKGVNWTSLRPVYIYGP- 157
Y ++ P E + + P++ + +GK E++ ++ +GV R +GP
Sbjct: 207 YGDPEVHPQSEEYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPR 266
Query: 158 --LNYNPVEEWFFHRLKAGRPIPIPGSGIQVTQLGHVKDLARAFVQVLGNEKAS-RQVFN 214
+N V F + G + + GSG Q +V DL V ++ + +S + N
Sbjct: 267 MHMNDGRVVSNFILQALQGEQLTVYGSGEQTRAFQYVSDLVNGLVALMNSNVSSPVNLGN 326
Query: 215 ISGEKYVTFDGLARACAKAAGFPEPELVHYNPKEFDFGKKKAFPFRDQHFFASVEKAKHV 274
V F L + + G E+ + + D ++K + KAK +
Sbjct: 327 PQEHSIVQFARLIKQLVGSGG----EISFLSEAQDDPQRRKP----------DIRKAKLL 372
Query: 275 LGWKPEFDLVEGLADSYNLDFGRGTYRKEADFSTDDMILGK 315
LGW+P L EGL + + +RKE + ++ + K
Sbjct: 373 LGWEPVVPLEEGLNKTIHY------FRKELEHQANNQYIPK 407
>sp|P37759|RMLB1_ECOLI dTDP-glucose 4,6-dehydratase 1 OS=Escherichia coli (strain K12)
GN=rfbB PE=3 SV=2
Length = 361
Score = 40.8 bits (94), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 53/119 (44%), Gaps = 14/119 (11%)
Query: 174 GRPIPIPGSGIQVTQLGHVKDLARAFVQVLGNEKASRQVFNISG-EKYVTFDGLARACAK 232
G+ +PI G G Q+ +V+D ARA V+ KA + +NI G + D + C
Sbjct: 218 GKALPIYGKGDQIRDWLYVEDHARALYTVVTEGKAG-ETYNIGGHNEKKNIDVVLTICDL 276
Query: 233 AAGFPEPELVHYNPKEFDFGKKKAF----PFRDQHFFASVEKAKHVLGWKPEFDLVEGL 287
E+V PKE + ++ + P D+ + EK LGWKP+ G+
Sbjct: 277 L-----DEIV---PKEKSYREQITYVADRPGHDRRYAIDAEKIGRALGWKPQETFESGI 327
>sp|P55584|Y4NL_RHISN Uncharacterized protein y4nL OS=Rhizobium sp. (strain NGR234)
GN=NGR_a02300 PE=4 SV=1
Length = 356
Score = 40.4 bits (93), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 43/200 (21%), Positives = 81/200 (40%), Gaps = 26/200 (13%)
Query: 118 CETDTVDPKSRH-KGKLNTESVLESKGVNWTSLRPVYIYGPLNYNP----VEEWFFHRLK 172
E DP + + + K+ E L ++ +++ V + P Y P + FF +K
Sbjct: 149 TEESPYDPHAGYGRSKMLMERALRAEVAAGSTMEIVIVRAPWFYGPNQPSRQTLFFKMVK 208
Query: 173 AGRPIPIPGSGIQVTQLGHVKDLARAFVQVLGNEKASRQVFNISGEKYVTFDGLARACA- 231
G+ PI GSG +G+ +LA+ + +E+A+ +F ++ E T + +
Sbjct: 209 EGK-FPIIGSGRNRRSMGYTDNLAQGILLAAVHERAAGDIFWLADETPYTMNEIIEVVGM 267
Query: 232 ----------KAAGFPEPELVHYNPKEFDFGKKKAFPFR---------DQHFFASVEKAK 272
K F P++V D + A + ++ + KA+
Sbjct: 268 VLHEDFGMTVKPNPFRLPDIVGGAATILDATLQYAGIYHQKIHVLSEMNKTIACDITKAR 327
Query: 273 HVLGWKPEFDLVEGLADSYN 292
VLG+ P+ L EG+ S +
Sbjct: 328 KVLGYAPKIALREGMQRSVD 347
>sp|Q9SYM5|RHM1_ARATH Probable rhamnose biosynthetic enzyme 1 OS=Arabidopsis thaliana
GN=RHM1 PE=1 SV=1
Length = 669
Score = 40.4 bits (93), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 84/200 (42%), Gaps = 20/200 (10%)
Query: 97 LEQFIYCSSAGVYLKSD---LLPHCETDTVDPKSRHKGKLNTESVL-----ESKGVNWTS 148
+ +FI+ S+ VY ++D L+ + E + P + + +L S G+ +
Sbjct: 124 IRRFIHVSTDEVYGETDEDALVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVIT 183
Query: 149 LRPVYIYGPLNY-NPVEEWFFHRLKAGRPIPIPGSGIQVTQLGHVKDLARAFVQVLGNEK 207
R +YGP + + F G+ +PI G G V + +D+A AF VL +
Sbjct: 184 TRGNNVYGPNQFPEKLIPKFILLAMRGQVLPIHGDGSNVRSYLYCEDVAEAFEVVLHKGE 243
Query: 208 ASRQVFNISGEKYVTFDGLARACAKAAGFPEPELVHYNPKEFDFGKKKAFPFRDQHFFAS 267
V+NI +K + +A+ K L + +P E + PF DQ +F
Sbjct: 244 VG-HVYNIGTKKERRVNDVAKDICK--------LFNMDP-EANIKFVDNRPFNDQRYFLD 293
Query: 268 VEKAKHVLGWKPEFDLVEGL 287
+K K LGW EGL
Sbjct: 294 DQKLKK-LGWSERTTWEEGL 312
>sp|P29782|RMLB_STRGR dTDP-glucose 4,6-dehydratase OS=Streptomyces griseus GN=strE PE=1
SV=1
Length = 328
Score = 40.0 bits (92), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 83/210 (39%), Gaps = 19/210 (9%)
Query: 87 VEPILDALP--NLEQFIYCSSAGVYLKSDLLPHCETDTVDPKSRHKGKLNTESVLE---- 140
+ +LDA + F+ S+ VY + E + + P S + + +L
Sbjct: 106 TQTLLDAATRHGVASFVQVSTDEVYGSLEHGSWTEDEPLRPNSPYSASKASGDLLALAHH 165
Query: 141 -SKGVNWTSLRPVYIYGPLNY-NPVEEWFFHRLKAGRPIPIPGSGIQVTQLGHVKDLARA 198
S G++ R YGP + + F L G +P+ G G+ V + HV D R
Sbjct: 166 VSHGLDVRVTRCSNNYGPRQFPEKLIPRFITLLMDGHRVPLYGDGLNVREWLHVDDHVRG 225
Query: 199 FVQVLGNEKASRQVFNISGEKYVTFDGLARACAKAAGFPEPELVHYNPKEFDFGKKKAFP 258
V +A R V+NI G ++ L +AAG + E+ +K
Sbjct: 226 IEAVRTRGRAGR-VYNIGGGATLSNKELVGLLLEAAG------ADWGSVEYVEDRKG--- 275
Query: 259 FRDQHFFASVEKAKHVLGWKPEFDLVEGLA 288
D+ + + + LG+ P DL +GLA
Sbjct: 276 -HDRRYAVDSTRIQRELGFAPAVDLADGLA 304
>sp|O95455|TGDS_HUMAN dTDP-D-glucose 4,6-dehydratase OS=Homo sapiens GN=TGDS PE=2 SV=1
Length = 350
Score = 40.0 bits (92), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 78/200 (39%), Gaps = 12/200 (6%)
Query: 97 LEQFIYCSSAGVY---LKSDLLPHCETDTVDP--KSRHKGKLNTESVLESKGVNWTSLRP 151
+E+FIY S+ VY L + +P S+ + +S E R
Sbjct: 134 VEKFIYVSTDEVYGGSLDKEFDESSPKQPTNPYASSKAAAECFVQSYWEQYKFPVVITRS 193
Query: 152 VYIYGPLNY-NPVEEWFFHRLKAGRPIPIPGSGIQVTQLGHVKDLARAFVQVLGNEKASR 210
+YGP Y V F L+ R I GSG+Q + D+ AF+ VL K
Sbjct: 194 SNVYGPHQYPEKVIPKFISLLQHNRKCCIHGSGLQTRNFLYATDVVEAFLTVLKKGKPG- 252
Query: 211 QVFNISGEKYVTFDGLARACAKAAGFPEPELVHYNPKEFDFGKKKAFPFRDQHFFASVEK 270
+++NI ++ LA+ + E N ++ + P D + EK
Sbjct: 253 EIYNIGTNFEMSVVQLAKELIQLIKETNSESEMENWVDYVNDR----PTNDMRYPMKSEK 308
Query: 271 AKHVLGWKPEFDLVEGLADS 290
H LGW+P+ EG+ +
Sbjct: 309 I-HGLGWRPKVPWKEGIKKT 327
>sp|Q9S642|RMLB_NEIMA dTDP-glucose 4,6-dehydratase OS=Neisseria meningitidis serogroup A
/ serotype 4A (strain Z2491) GN=rfbB1 PE=3 SV=1
Length = 341
Score = 39.7 bits (91), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 55/134 (41%), Gaps = 6/134 (4%)
Query: 174 GRPIPIPGSGIQVTQLGHVKDLARAFVQVLGNEKASRQVFNISG-EKYVTFDGLARACAK 232
G+P+P+ G G+Q+ V+D ARA QV+ E + +NI G + + + CA
Sbjct: 211 GKPLPVYGDGMQIRDWLFVEDHARALYQVV-TEGVVGETYNIGGHNEKANIEVVKTICAL 269
Query: 233 AAGF-PE-PELVHYNPKEFDFGKKKAFPFRDQHFFASVEKAKHVLGWKPEFDLVEGLADS 290
PE P V F + + P D + K + LGW+P GL +
Sbjct: 270 LEELAPEKPAGVARYEDLITFVQDR--PGHDARYAVDTAKIRRDLGWQPLETFESGLRKT 327
Query: 291 YNLDFGRGTYRKEA 304
T R+ A
Sbjct: 328 VQWYLDNKTRRQNA 341
>sp|Q55C77|FCL_DICDI GDP-L-fucose synthase OS=Dictyostelium discoideum GN=ger PE=3 SV=1
Length = 320
Score = 39.7 bits (91), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 49/107 (45%), Gaps = 10/107 (9%)
Query: 140 ESKGVNWTSLRPVYIYGP-----LNYNPVEEWFFHR----LKAGRPIPIPGSGIQVTQLG 190
E G +TS+ P IYGP L V H+ +K + + I G+G + Q
Sbjct: 158 EEYGCKFTSVIPTNIYGPHDNYHLTDGHVIPGLIHKTYLAMKNNQDLTIMGTGKPLRQFI 217
Query: 191 HVKDLARAFVQVLGN-EKASRQVFNISGEKYVTFDGLARACAKAAGF 236
+ DLA+ FV L N E+ S + ++ E ++ +AR +A F
Sbjct: 218 YSYDLAKYFVWTLNNYEEMSPLILSVGEEDEISIADVARLITEAMEF 264
>sp|P09147|GALE_ECOLI UDP-glucose 4-epimerase OS=Escherichia coli (strain K12) GN=galE
PE=1 SV=1
Length = 338
Score = 39.3 bits (90), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 78/336 (23%), Positives = 131/336 (38%), Gaps = 60/336 (17%)
Query: 2 GGTRFIGVFLSRLLVKEGHQVTLF------TRGKAPIAQQLPG------ESDQEFAEFSS 49
GG+ +IG L++ GH V + R P+ ++L G E D +
Sbjct: 7 GGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMT 66
Query: 50 KILHLKGDRKDYDFVKSSLSAKGFDV-----VYDINGREADEVEPILDALPNLEQFIYCS 104
+ILH F + L A G V YD N + + A N++ FI+ S
Sbjct: 67 EILHDHAIDTVIHF--AGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAA-NVKNFIFSS 123
Query: 105 SAGVYLKSDLLPHCET-DTVDPKSRH-KGKLNTESV---LESKGVNWTSLRPVYIYGPLN 159
SA VY +P+ E+ T P+S + K KL E + L+ +W S+ + + P+
Sbjct: 124 SATVYGDQPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDW-SIALLRYFNPVG 182
Query: 160 YNPVEEW-------------FFHRLKAGR--PIPIPGS------GIQVTQLGHVKDLARA 198
+P + + ++ GR + I G+ G V HV DLA
Sbjct: 183 AHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHVMDLADG 242
Query: 199 FVQVLGN--EKASRQVFNISGEKYVTFDGLARACAKAAGFPEPELVHYNPKEFDFGKKKA 256
V + K ++N+ + + A +KA G +P H+ P+ ++
Sbjct: 243 HVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACG--KPVNYHFAPR-----REGD 295
Query: 257 FPFRDQHFFASVEKAKHVLGWKPEFDLVEGLADSYN 292
P ++A KA L W+ L E D+++
Sbjct: 296 LPA----YWADASKADRELNWRVTRTLDEMAQDTWH 327
>sp|P37777|RMLB_SHIFL dTDP-glucose 4,6-dehydratase OS=Shigella flexneri GN=rfbB PE=3 SV=2
Length = 361
Score = 39.3 bits (90), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 53/119 (44%), Gaps = 14/119 (11%)
Query: 174 GRPIPIPGSGIQVTQLGHVKDLARAFVQVLGNEKASRQVFNISG-EKYVTFDGLARACAK 232
G+ +PI G G Q+ +V+D ARA V+ KA + +NI G + D + C
Sbjct: 218 GKALPIYGKGDQIRDWLYVEDHARALYTVVTEGKAG-ETYNIGGHNEKKNIDVVLTICDL 276
Query: 233 AAGFPEPELVHYNPKEFDFGKKKAF----PFRDQHFFASVEKAKHVLGWKPEFDLVEGL 287
E+V PKE + ++ + P D+ + +K LGWKP+ G+
Sbjct: 277 L-----DEIV---PKEKSYREQITYVADRPGHDRRYAIDADKISRELGWKPQETFESGI 327
>sp|Q56623|GALE_VIBCL UDP-glucose 4-epimerase OS=Vibrio cholerae GN=galE PE=3 SV=1
Length = 328
Score = 39.3 bits (90), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 59/145 (40%), Gaps = 11/145 (7%)
Query: 149 LRPVYIYGPLNYNPVEEWFFHRLK-AGRPIPIPGSGIQVTQ--LGHVKDLARAFVQVLGN 205
+RP +YGP V+ F ++ + IP+P I + L + +L V + +
Sbjct: 174 IRPTIVYGP----GVKANFASLMRLVSKGIPLPFGSITQNKRSLVSINNLVDLIVTCIDH 229
Query: 206 EKASRQVFNISGEKYVTFDGLARACAKAAGFPEPEL--VHYNPKEFD--FGKKKAFPFRD 261
KA+ QVF +S V+ + R A A P +L + K F FGK
Sbjct: 230 PKAANQVFLVSDGHDVSTAEMVRELAIALDKPTWQLPVPIWCYKLFGKLFGKSDIVDRLT 289
Query: 262 QHFFASVEKAKHVLGWKPEFDLVEG 286
+ K LGWKP L EG
Sbjct: 290 GTLQVDISHTKETLGWKPPQTLQEG 314
>sp|Q67WR2|FCL1_ORYSJ Probable GDP-L-fucose synthase 1 OS=Oryza sativa subsp. japonica
GN=Os06g0652400 PE=2 SV=1
Length = 328
Score = 39.3 bits (90), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 69/159 (43%), Gaps = 23/159 (14%)
Query: 143 GVNWTSLRPVYIYGPL-NYNPVEEWF-------FHRLKAGRP--IPIPGSGIQVTQLGHV 192
G + S P +YGP N++P FH KA + + G+G + + HV
Sbjct: 171 GFDAISAMPTNLYGPQDNFHPENSHVLPALIRRFHEAKASNAAEVVVWGTGSPLREFLHV 230
Query: 193 KDLARAFVQVLGNEKASRQVFNISGEKYVTFDGLARACAKAAGFPEPELVHYNPKEFDFG 252
DLA A + ++ + V N+ VT LA + GF + +LV +D
Sbjct: 231 DDLADAVIFLMDHYSGLEHV-NVGSGSEVTIKELAELVKEVVGF-QGKLV------WDSS 282
Query: 253 KKKAFPFRDQHFFASVEKAKHVLGWKPEFDLVEGLADSY 291
K P R + +++ +GWKP+ L EGL ++Y
Sbjct: 283 KPDGTP-RKLMDSSKIQE----MGWKPKVPLKEGLVETY 316
>sp|Q331Q7|GERKI_STRSQ dTDP-4-dehydro-6-deoxyglucose reductase OS=Streptomyces sp.
GN=gerKI PE=1 SV=1
Length = 326
Score = 39.3 bits (90), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 43/104 (41%), Gaps = 7/104 (6%)
Query: 140 ESKGVNWTSLRPVYIYGP-----LNYNPVEEWFFHRLKAGRPIPIPGSGIQVTQLGHVKD 194
E G N +RP +YGP + V + AG I I G G Q HV D
Sbjct: 176 EQFGTNVFLVRPGNVYGPGDGFDCSRGRVIPSMLAKADAGEEIEIWGDGSQTRSFVHVAD 235
Query: 195 LARAFVQVLGNEKASRQVFNISGEKYVTFDGLARACAKAAGFPE 238
L RA +++L E N++G + V+ LA G PE
Sbjct: 236 LVRASLRLL--ETGKYPEMNVAGAEQVSILELAGMVMAVLGRPE 277
>sp|P55293|RMLB_ECOLX dTDP-glucose 4,6-dehydratase OS=Escherichia coli GN=rfbB PE=1 SV=1
Length = 361
Score = 38.9 bits (89), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 53/119 (44%), Gaps = 14/119 (11%)
Query: 174 GRPIPIPGSGIQVTQLGHVKDLARAFVQVLGNEKASRQVFNISG-EKYVTFDGLARACAK 232
G+ +PI G G Q+ +V+D ARA V+ KA + +NI G + D + C
Sbjct: 218 GKALPIYGKGDQIRDWLYVEDHARALYTVVTEGKAG-ETYNIGGHNEKKNIDVVFTICDL 276
Query: 233 AAGFPEPELVHYNPKEFDFGKKKAF----PFRDQHFFASVEKAKHVLGWKPEFDLVEGL 287
E+V PKE + ++ + P D+ + +K LGWKP+ G+
Sbjct: 277 L-----DEIV---PKEKSYREQITYVADRPGHDRRYAIDADKISRELGWKPQETFESGI 327
>sp|A6QLW2|TGDS_BOVIN dTDP-D-glucose 4,6-dehydratase OS=Bos taurus GN=TGDS PE=2 SV=1
Length = 355
Score = 38.9 bits (89), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 77/197 (39%), Gaps = 12/197 (6%)
Query: 97 LEQFIYCSSAGVY---LKSDLLPHCETDTVDP--KSRHKGKLNTESVLESKGVNWTSLRP 151
+E+FIY S+ VY L + +P S+ + +S E R
Sbjct: 134 VEKFIYVSTDEVYGGSLDKEFDESSPKQPTNPYASSKAAAECFVQSYWEQYKFPVVITRS 193
Query: 152 VYIYGPLNY-NPVEEWFFHRLKAGRPIPIPGSGIQVTQLGHVKDLARAFVQVLGNEKASR 210
+YGP Y V F L+ R I G+G+Q + D+ AF+ VL K
Sbjct: 194 SNVYGPHQYPEKVIPKFISLLQHNRKCCIHGTGLQTRNFLYATDVVEAFLTVLKKGKPG- 252
Query: 211 QVFNISGEKYVTFDGLARACAKAAGFPEPELVHYNPKEFDFGKKKAFPFRDQHFFASVEK 270
+++NI ++ LA+ + E N ++ + P D + EK
Sbjct: 253 EIYNIGTNFEMSVLQLAKELIQLIKETNSESEMENWVDYVDDR----PTNDMRYPMKSEK 308
Query: 271 AKHVLGWKPEFDLVEGL 287
H LGW+P+ EG+
Sbjct: 309 I-HGLGWRPKVPWKEGI 324
>sp|P0C7J0|RMLB_XANCP dTDP-glucose 4,6-dehydratase OS=Xanthomonas campestris pv.
campestris (strain ATCC 33913 / NCPPB 528 / LMG 568)
GN=rfbB PE=3 SV=1
Length = 351
Score = 38.5 bits (88), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 48/128 (37%), Gaps = 2/128 (1%)
Query: 173 AGRPIPIPGSGIQVTQLGHVKDLARAFVQVLGNEKASRQVFNISGEKYVTFDGLARACAK 232
AG P+P+ G G QV V D A VL + + +N+ G + +A
Sbjct: 208 AGEPLPVYGDGKQVRDWLFVSDHCEAIRTVLAKGRVG-ETYNVGGNSERQNIEVVQAICA 266
Query: 233 AAGFPEPELVHYNPKEFDFGKKKAFPFRDQHFFASVEKAKHVLGWKPEFDLVEGLADSYN 292
P P+E P D+ + K K LGW+P + +G+A + +
Sbjct: 267 LLDQHRPR-EDGKPRESQIAYVTDRPGHDRRYAIDASKLKDELGWEPAYTFEQGIAQTVD 325
Query: 293 LDFGRGTY 300
T+
Sbjct: 326 WYLTNQTW 333
>sp|Q04973|VIPB_SALTI Vi polysaccharide biosynthesis protein VipB/TviC OS=Salmonella
typhi GN=vipB PE=3 SV=1
Length = 348
Score = 38.5 bits (88), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 48/206 (23%), Positives = 79/206 (38%), Gaps = 21/206 (10%)
Query: 96 NLEQFIYCSSAGVYLKSDLLPHCETDTVDPKS-----RHKGKLNTESVLESKGVNWTSLR 150
++ F Y +S+ Y LP E P S ++ +L + S N LR
Sbjct: 132 HVSSFTYAASSSTYGDHPDLPKIEERIGRPLSPYAVTKYVNELYADVFARSYEFNAIGLR 191
Query: 151 PVYIYGPLNYNP-------VEEWFFHRLKAGRPIPIPGSGIQVTQLGHVKDLARA-FVQV 202
++G NP + W LK PI I G G +++++ +A +
Sbjct: 192 YFNVFGRRQ-NPNGAYSAVIPRWILSLLK-DEPIYINGDGSTSRDFCYIENVIQANLLSA 249
Query: 203 LGNEKASR-QVFNISGEKYVTFDGLARACAKAAGFPEPELVHYNPKEFDFGKKKAFPFRD 261
N+ AS+ +V+N++ + + L E P DF
Sbjct: 250 TTNDLASKNKVYNVAVGDRTSLNELYYLIRDGLNLWRNEQSRAEPIYKDFRDGDV----- 304
Query: 262 QHFFASVEKAKHVLGWKPEFDLVEGL 287
+H A + K K L ++PEFD+ EGL
Sbjct: 305 KHSQADITKIKTFLSYEPEFDIKEGL 330
>sp|Q8VDR7|TGDS_MOUSE dTDP-D-glucose 4,6-dehydratase OS=Mus musculus GN=Tgds PE=2 SV=2
Length = 355
Score = 38.1 bits (87), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 76/197 (38%), Gaps = 12/197 (6%)
Query: 97 LEQFIYCSSAGVY---LKSDLLPHCETDTVDP--KSRHKGKLNTESVLESKGVNWTSLRP 151
+E+FIY S+ VY L + +P S+ + +S E R
Sbjct: 134 VEKFIYVSTDEVYGGSLDQEFDESSPKQPTNPYASSKAAAECFVQSYWERYKFPVVITRS 193
Query: 152 VYIYGPLNY-NPVEEWFFHRLKAGRPIPIPGSGIQVTQLGHVKDLARAFVQVLGNEKASR 210
+YGP Y V F L+ R I GSG+Q + D+ AF+ VL +
Sbjct: 194 SNVYGPHQYPEKVIPKFISLLQHNRKCCIHGSGLQRRNFLYAADVVEAFLTVLTKGEPG- 252
Query: 211 QVFNISGEKYVTFDGLARACAKAAGFPEPELVHYNPKEFDFGKKKAFPFRDQHFFASVEK 270
+++NI ++ LA+ + E D+ + P D + EK
Sbjct: 253 EIYNIGTNFEMSVVQLAKELIQL--IKETNSESETESWVDYVSDR--PHNDMRYPMKSEK 308
Query: 271 AKHVLGWKPEFDLVEGL 287
H LGWKP+ EG+
Sbjct: 309 I-HSLGWKPKVPWEEGI 324
>sp|P37761|RMLB_NEIGO dTDP-glucose 4,6-dehydratase OS=Neisseria gonorrhoeae GN=rfbB PE=3
SV=1
Length = 346
Score = 38.1 bits (87), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 54/135 (40%), Gaps = 6/135 (4%)
Query: 173 AGRPIPIPGSGIQVTQLGHVKDLARAFVQVLGNEKASRQVFNISGEKYVT-FDGLARACA 231
+G+P+P+ G G Q+ V+D ARA QV+ E + +NI G T + + CA
Sbjct: 215 SGKPLPVYGDGAQIRDWLFVEDHARALYQVV-TEGVVGETYNIGGHNEKTNLEVVKTICA 273
Query: 232 KAAGF-PE-PELVHYNPKEFDFGKKKAFPFRDQHFFASVEKAKHVLGWKPEFDLVEGLAD 289
PE P V F + + P D + K + LGW P GL
Sbjct: 274 LLEELAPEKPAGVARYEDLITFVQDR--PGHDARYAVDAAKIRRDLGWLPLETFESGLRK 331
Query: 290 SYNLDFGRGTYRKEA 304
+ T R+ A
Sbjct: 332 TVQWYLDNKTRRQNA 346
>sp|B0RVL0|RMLB_XANCB dTDP-glucose 4,6-dehydratase OS=Xanthomonas campestris pv.
campestris (strain B100) GN=rfbB PE=3 SV=1
Length = 351
Score = 38.1 bits (87), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 44/116 (37%), Gaps = 2/116 (1%)
Query: 173 AGRPIPIPGSGIQVTQLGHVKDLARAFVQVLGNEKASRQVFNISGEKYVTFDGLARACAK 232
AG P+P+ G G QV V D A VL + + +N+ G + +A
Sbjct: 208 AGEPLPVYGDGKQVRDWLFVSDHCEAIRTVLAKGRVG-ETYNVGGNSERQNIEVVQAICA 266
Query: 233 AAGFPEPELVHYNPKEFDFGKKKAFPFRDQHFFASVEKAKHVLGWKPEFDLVEGLA 288
P P+E P D+ + K K LGW+P + +G+A
Sbjct: 267 LLDQHRPR-EDGKPRESQIAYVTDRPGHDRRYAIDASKLKDELGWEPAYTFEQGIA 321
>sp|O34886|YTCB_BACSU Uncharacterized UDP-glucose epimerase YtcB OS=Bacillus subtilis
(strain 168) GN=ytcB PE=3 SV=1
Length = 316
Score = 37.7 bits (86), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 50/215 (23%), Positives = 82/215 (38%), Gaps = 48/215 (22%)
Query: 96 NLEQFIYCSSAGVYLK-----------SDLLPHCETDTVDPKSRHKGKLNTESVLESKGV 144
+++ F++ S++ VY + S L P+ T K H K +S G+
Sbjct: 117 SIQTFVFASTSSVYGEKQGKVSENTSLSPLSPYGVTKLTGEKLCHVYK-------QSFGI 169
Query: 145 NWTSLRPVYIYGPLNYNPVEEWFFHRL----KAGRPIPIPGSGIQVTQLGHVKDLARAFV 200
LR +YGP + FHRL +P+ I G G Q ++ D +
Sbjct: 170 PIVILRFFTVYGPRQR---PDMAFHRLIKQHLQQKPLTIFGDGQQSRDFTYISDCVKGIT 226
Query: 201 QVLGNEKASRQVFNISGEKYVTFDGLARACAKAAGFPEPELVHYNPKEFDFGKKKAFPFR 260
VLG + NI G + +A+ L+ E G+K F
Sbjct: 227 AVLGKPHLIGETVNIGGAE------------RASVLKVVSLI-----EDISGRKATLHFS 269
Query: 261 DQ------HFFASVEKAKHVLGWKPEFDLVEGLAD 289
D+ + +A + KAK +L + P L +GL +
Sbjct: 270 DKIAGEPSNTWADISKAKQLLHYDPATSLKDGLTN 304
>sp|P26391|RMLB_SALTY dTDP-glucose 4,6-dehydratase OS=Salmonella typhimurium (strain LT2
/ SGSC1412 / ATCC 700720) GN=rfbB PE=1 SV=1
Length = 361
Score = 37.7 bits (86), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 46/114 (40%), Gaps = 20/114 (17%)
Query: 174 GRPIPIPGSGIQVTQLGHVKDLARAFVQVLGNEKASRQVFNISGEK--------YVTFDG 225
G+P+PI G G Q+ +V+D ARA V+ KA + +NI G + D
Sbjct: 218 GKPLPIYGKGDQIRDWLYVEDHARALHMVVTEGKAG-ETYNIGGHNEKKNLDVVFTICDL 276
Query: 226 LARACAKAAGFPEPELVHYNPKEFDFGKKKAFPFRDQHFFASVEKAKHVLGWKP 279
L KA + E + + + P D+ + K LGWKP
Sbjct: 277 LDEIVPKATSYRE---------QITYVADR--PGHDRRYAIDAGKISRELGWKP 319
>sp|Q56093|GALE_SALTI UDP-glucose 4-epimerase OS=Salmonella typhi GN=galE PE=3 SV=2
Length = 338
Score = 37.7 bits (86), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 76/336 (22%), Positives = 130/336 (38%), Gaps = 60/336 (17%)
Query: 2 GGTRFIGVFLSRLLVKEGHQVTLF------TRGKAPIAQQLPG------ESDQEFAEFSS 49
GG+ +IG L++ GH V + R P+ ++L G E D +
Sbjct: 7 GGSGYIGSHTCVQLLQNGHDVVILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALIT 66
Query: 50 KILHLKGDRKDYDFVKSSLSAKGFDVV-----YDINGREADEVEPILDALPNLEQFIYCS 104
+ILH F + L A G V YD N + + A N++ I+ S
Sbjct: 67 EILHDHAIDTVIHF--AGLKAVGESVAKPLEYYDNNVNGTLRLVSAMRA-ANVKNLIFSS 123
Query: 105 SAGVYLKSDLLPHCET-DTVDPKSRH-KGKLNTESV---LESKGVNWTSLRPVYIYGPLN 159
SA VY +P+ E+ T P+S + K KL E + L+ W S+ + + P+
Sbjct: 124 SATVYGDQPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPEW-SIALLRYFNPVG 182
Query: 160 YNPVEEW-------------FFHRLKAGR--PIPIPGS------GIQVTQLGHVKDLARA 198
+P + + ++ GR + + G+ G V HV DLA
Sbjct: 183 AHPSGDMGEDPQGIPNNLMPYIAQVAVGRRESLAVFGNDYPTEDGTGVRDYIHVMDLADG 242
Query: 199 FVQVLGN--EKASRQVFNISGEKYVTFDGLARACAKAAGFPEPELVHYNPKEFDFGKKKA 256
V + +K+ ++N+ + + A +KA G +P H+ P+ +
Sbjct: 243 HVVAMEKLADKSGVHIYNLGAGVGSSVLDVVNAFSKACG--KPINYHFAPR-----RDGD 295
Query: 257 FPFRDQHFFASVEKAKHVLGWKPEFDLVEGLADSYN 292
P ++A KA L W+ L E D+++
Sbjct: 296 LPA----YWADASKADRELNWRVTRTLDEMAQDTWH 327
>sp|Q6P0H7|CBR4_DANRE Carbonyl reductase family member 4 OS=Danio rerio GN=cbr4 PE=2
SV=1
Length = 237
Score = 37.7 bits (86), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
Query: 2 GGTRFIGVFLSRLLVKEGHQVTLFTRGK---APIAQQLPGES 40
GG+R IG S+LL + GH++ L +R K AQ LPGE+
Sbjct: 9 GGSRGIGRAASKLLAQRGHRIVLLSRNKEAAQSTAQSLPGEN 50
>sp|P22715|GALE_SALTY UDP-glucose 4-epimerase OS=Salmonella typhimurium (strain LT2 /
SGSC1412 / ATCC 700720) GN=galE PE=3 SV=2
Length = 338
Score = 37.4 bits (85), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 76/336 (22%), Positives = 130/336 (38%), Gaps = 60/336 (17%)
Query: 2 GGTRFIGVFLSRLLVKEGHQVTLF------TRGKAPIAQQLPG------ESDQEFAEFSS 49
GG+ +IG L++ GH V + R P+ ++L G E D +
Sbjct: 7 GGSGYIGSHTCVQLLQNGHDVVILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALIT 66
Query: 50 KILHLKGDRKDYDFVKSSLSAKGFDVV-----YDINGREADEVEPILDALPNLEQFIYCS 104
+ILH F + L A G V YD N + + A N++ I+ S
Sbjct: 67 EILHDHAIDTVIHF--AGLKAVGESVARPLEYYDNNVNGTLRLVSAMRAA-NVKNLIFSS 123
Query: 105 SAGVYLKSDLLPHCET-DTVDPKSRH-KGKLNTESV---LESKGVNWTSLRPVYIYGPLN 159
SA VY +P+ E+ T P+S + K KL E + L+ W S+ + + P+
Sbjct: 124 SATVYGDQPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPEW-SIALLRYFNPVG 182
Query: 160 YNPVEEW-------------FFHRLKAGR--PIPIPGS------GIQVTQLGHVKDLARA 198
+P + + ++ GR + + G+ G V HV DLA
Sbjct: 183 AHPSGDMGEDPQGIPNNLMPYIAQVAVGRRESLAVFGNDYPTEDGTGVRDYIHVMDLADG 242
Query: 199 FVQVLGN--EKASRQVFNISGEKYVTFDGLARACAKAAGFPEPELVHYNPKEFDFGKKKA 256
V + +K+ ++N+ + + A +KA G +P H+ P+ +
Sbjct: 243 HVVAMEKLADKSGVHIYNLGAGVGSSVLDVVNAFSKACG--KPINYHFAPR-----RDGD 295
Query: 257 FPFRDQHFFASVEKAKHVLGWKPEFDLVEGLADSYN 292
P ++A KA L W+ L E D+++
Sbjct: 296 LPA----YWADASKADRELNWRVTRTLDEMAQDTWH 327
>sp|P44914|RMLB_HAEIN dTDP-glucose 4,6-dehydratase OS=Haemophilus influenzae (strain ATCC
51907 / DSM 11121 / KW20 / Rd) GN=rffG PE=3 SV=1
Length = 338
Score = 37.0 bits (84), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 48/117 (41%), Gaps = 6/117 (5%)
Query: 174 GRPIPIPGSGIQVTQLGHVKDLARAFVQVLGNEKASRQVFNISGE-KYVTFDGLARACA- 231
G+P+PI G G Q+ V+D +A VL + +NI G + + + R C
Sbjct: 211 GKPLPIYGDGQQIRDWLFVEDHVQASYLVLTKGRVGEN-YNIGGNCEKTNLEVVKRICQL 269
Query: 232 -KAAGFPEPELVHYNPKEFDFGKKKAFPFRDQHFFASVEKAKHVLGWKPEFDLVEGL 287
+ +P + Y F K + P D + K LGW+P+ +GL
Sbjct: 270 LEELAPSKPNHIKYYEDLMTFVKDR--PGHDVRYSLDCSKIHAELGWQPQITFEQGL 324
>sp|Q67WR5|FCL2_ORYSJ Putative GDP-L-fucose synthase 2 OS=Oryza sativa subsp. japonica
GN=Os06g0652300 PE=3 SV=1
Length = 347
Score = 36.6 bits (83), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 66/176 (37%), Gaps = 39/176 (22%)
Query: 135 TESVLESKGVNWTSLRPVYIYGPLNYNPVEEWF--------FHR--LKAGRPIPIPGSGI 184
++V G++ + P +YGP + P E FHR L+ + + GSG
Sbjct: 179 CQAVRAEYGLDAIAAAPNNLYGPRHPFPPEHSHVIPALIRRFHRAKLEGAGEVAVWGSGA 238
Query: 185 QVTQLGHVKDLARAFVQVLGNEKASRQVFNISGEKYVTFDGLARACAKAAGF-------- 236
+ HV DLA A V VL + + N+ + VT LA A G+
Sbjct: 239 AAREFTHVDDLAEAVV-VLMERYSGEEHVNVGSGEEVTVRELAEAVRGVVGYEGVVAWDA 297
Query: 237 PEPELVHYNPKEFDFGKKKAFPFRDQHFFASVEKAKHVLGWKPEFDLVEGLADSYN 292
PE V + D G+ + LGW+P L +G+ D Y
Sbjct: 298 ARPEGVAR--RVVDSGRMRK------------------LGWEPRVALRDGIQDLYR 333
>sp|O49213|FCL1_ARATH GDP-L-fucose synthase 1 OS=Arabidopsis thaliana GN=GER1 PE=1 SV=3
Length = 323
Score = 36.2 bits (82), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 63/154 (40%), Gaps = 27/154 (17%)
Query: 151 PVYIYGPL-NYNPVEEWF-------FH--RLKAGRPIPIPGSGIQVTQLGHVKDLARAFV 200
P +YGP N++P FH ++ + + G+G + + HV DLA A V
Sbjct: 176 PTNLYGPNDNFHPENSHVLPALMRRFHEAKVNGAEEVVVWGTGSPLREFLHVDDLADACV 235
Query: 201 QVLGNEKASRQVFNISGEKYVTFDGLARACAKAAGFPEPELVHYNPKEFDFGKKKAFP-- 258
+L V NI + VT LA + GF E +L +D K P
Sbjct: 236 FLLDRYSGLEHV-NIGSGQEVTIRELAELVKEVVGF-EGKL------GWDCTKPDGTPRK 287
Query: 259 FRDQHFFASVEKAKHVLGWKPEFDLVEGLADSYN 292
D AS LGW P+ L +GL+ +Y+
Sbjct: 288 LMDSSKLAS-------LGWTPKVSLRDGLSQTYD 314
>sp|P55294|RMLB_NEIMB dTDP-glucose 4,6-dehydratase OS=Neisseria meningitidis serogroup B
(strain MC58) GN=rfbB1 PE=3 SV=2
Length = 355
Score = 36.2 bits (82), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 47/109 (43%), Gaps = 6/109 (5%)
Query: 174 GRPIPIPGSGIQVTQLGHVKDLARAFVQVLGNEKASRQVFNISG-EKYVTFDGLARACAK 232
G+P+P+ G G+Q+ V+D ARA QV+ E + +NI G + + + CA
Sbjct: 211 GKPLPVYGDGMQIRDWLFVEDHARALYQVV-TEGVVGETYNIGGHNEKANIEVVKTICAL 269
Query: 233 AAGF-PE-PELVHYNPKEFDFGKKKAFPFRDQHFFASVEKAKHVLGWKP 279
PE P V F + + P D + K + LGW P
Sbjct: 270 LEELAPEKPAGVARYEDLITFVQDR--PGHDVRYAVDAAKIRRDLGWLP 316
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.139 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 127,842,563
Number of Sequences: 539616
Number of extensions: 5695279
Number of successful extensions: 13321
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 84
Number of HSP's that attempted gapping in prelim test: 13261
Number of HSP's gapped (non-prelim): 104
length of query: 321
length of database: 191,569,459
effective HSP length: 117
effective length of query: 204
effective length of database: 128,434,387
effective search space: 26200614948
effective search space used: 26200614948
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)