BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020798
(321 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 434 bits (1115), Expect = e-122, Method: Compositional matrix adjust.
Identities = 204/307 (66%), Positives = 246/307 (80%), Gaps = 8/307 (2%)
Query: 13 YTLTQTLNGHLRAISSVKFSHDGRLLASSSADKXXXXXXXXXXXXXXXXXXXXLQKFTGH 72
Y L TL GH +A+SSVKFS +G LASSSADK + +GH
Sbjct: 35 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE--------KTISGH 86
Query: 73 EQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVS 132
+ G+SD+ +SSDS LVSASDDKT+++WDV + CLKTL GH+NYVFC NFNPQSN+IVS
Sbjct: 87 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS 146
Query: 133 GAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCM 192
G+FDE+VRIWDVKTGKCLK LPAHSDPV+AV FNRDG++IV+SSYDGLCRIWD ++G C+
Sbjct: 147 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 206
Query: 193 KTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTF 252
KTLIDD+NPPVSFVKFSPNGK+IL TLDNTL+LW+YS GK LKTYTGH N KYCI + F
Sbjct: 207 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANF 266
Query: 253 SVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRT 312
SVT GK+IVSGSED+ VY+W LQ++++VQKL+GHTD VIS A HPTENIIAS AL+ND+T
Sbjct: 267 SVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKT 326
Query: 313 VKIWTQE 319
+K+W +
Sbjct: 327 IKLWKSD 333
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 433 bits (1113), Expect = e-122, Method: Compositional matrix adjust.
Identities = 204/307 (66%), Positives = 246/307 (80%), Gaps = 8/307 (2%)
Query: 13 YTLTQTLNGHLRAISSVKFSHDGRLLASSSADKXXXXXXXXXXXXXXXXXXXXLQKFTGH 72
Y L TL GH +A+SSVKFS +G LASSSADK + +GH
Sbjct: 37 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE--------KTISGH 88
Query: 73 EQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVS 132
+ G+SD+ +SSDS LVSASDDKT+++WDV + CLKTL GH+NYVFC NFNPQSN+IVS
Sbjct: 89 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS 148
Query: 133 GAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCM 192
G+FDE+VRIWDVKTGKCLK LPAHSDPV+AV FNRDG++IV+SSYDGLCRIWD ++G C+
Sbjct: 149 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 208
Query: 193 KTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTF 252
KTLIDD+NPPVSFVKFSPNGK+IL TLDNTL+LW+YS GK LKTYTGH N KYCI + F
Sbjct: 209 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANF 268
Query: 253 SVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRT 312
SVT GK+IVSGSED+ VY+W LQ++++VQKL+GHTD VIS A HPTENIIAS AL+ND+T
Sbjct: 269 SVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKT 328
Query: 313 VKIWTQE 319
+K+W +
Sbjct: 329 IKLWKSD 335
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 432 bits (1111), Expect = e-121, Method: Compositional matrix adjust.
Identities = 204/307 (66%), Positives = 246/307 (80%), Gaps = 8/307 (2%)
Query: 13 YTLTQTLNGHLRAISSVKFSHDGRLLASSSADKXXXXXXXXXXXXXXXXXXXXLQKFTGH 72
Y L TL GH +A+SSVKFS +G LASSSADK + +GH
Sbjct: 30 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE--------KTISGH 81
Query: 73 EQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVS 132
+ G+SD+ +SSDS LVSASDDKT+++WDV + CLKTL GH+NYVFC NFNPQSN+IVS
Sbjct: 82 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS 141
Query: 133 GAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCM 192
G+FDE+VRIWDVKTGKCLK LPAHSDPV+AV FNRDG++IV+SSYDGLCRIWD ++G C+
Sbjct: 142 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 201
Query: 193 KTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTF 252
KTLIDD+NPPVSFVKFSPNGK+IL TLDNTL+LW+YS GK LKTYTGH N KYCI + F
Sbjct: 202 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANF 261
Query: 253 SVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRT 312
SVT GK+IVSGSED+ VY+W LQ++++VQKL+GHTD VIS A HPTENIIAS AL+ND+T
Sbjct: 262 SVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKT 321
Query: 313 VKIWTQE 319
+K+W +
Sbjct: 322 IKLWKSD 328
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 432 bits (1111), Expect = e-121, Method: Compositional matrix adjust.
Identities = 204/307 (66%), Positives = 246/307 (80%), Gaps = 8/307 (2%)
Query: 13 YTLTQTLNGHLRAISSVKFSHDGRLLASSSADKXXXXXXXXXXXXXXXXXXXXLQKFTGH 72
Y L TL GH +A+SSVKFS +G LASSSADK + +GH
Sbjct: 19 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE--------KTISGH 70
Query: 73 EQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVS 132
+ G+SD+ +SSDS LVSASDDKT+++WDV + CLKTL GH+NYVFC NFNPQSN+IVS
Sbjct: 71 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS 130
Query: 133 GAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCM 192
G+FDE+VRIWDVKTGKCLK LPAHSDPV+AV FNRDG++IV+SSYDGLCRIWD ++G C+
Sbjct: 131 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 190
Query: 193 KTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTF 252
KTLIDD+NPPVSFVKFSPNGK+IL TLDNTL+LW+YS GK LKTYTGH N KYCI + F
Sbjct: 191 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANF 250
Query: 253 SVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRT 312
SVT GK+IVSGSED+ VY+W LQ++++VQKL+GHTD VIS A HPTENIIAS AL+ND+T
Sbjct: 251 SVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKT 310
Query: 313 VKIWTQE 319
+K+W +
Sbjct: 311 IKLWKSD 317
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 432 bits (1111), Expect = e-121, Method: Compositional matrix adjust.
Identities = 204/307 (66%), Positives = 246/307 (80%), Gaps = 8/307 (2%)
Query: 13 YTLTQTLNGHLRAISSVKFSHDGRLLASSSADKXXXXXXXXXXXXXXXXXXXXLQKFTGH 72
Y L TL GH +A+SSVKFS +G LASSSADK + +GH
Sbjct: 18 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE--------KTISGH 69
Query: 73 EQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVS 132
+ G+SD+ +SSDS LVSASDDKT+++WDV + CLKTL GH+NYVFC NFNPQSN+IVS
Sbjct: 70 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS 129
Query: 133 GAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCM 192
G+FDE+VRIWDVKTGKCLK LPAHSDPV+AV FNRDG++IV+SSYDGLCRIWD ++G C+
Sbjct: 130 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 189
Query: 193 KTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTF 252
KTLIDD+NPPVSFVKFSPNGK+IL TLDNTL+LW+YS GK LKTYTGH N KYCI + F
Sbjct: 190 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANF 249
Query: 253 SVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRT 312
SVT GK+IVSGSED+ VY+W LQ++++VQKL+GHTD VIS A HPTENIIAS AL+ND+T
Sbjct: 250 SVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKT 309
Query: 313 VKIWTQE 319
+K+W +
Sbjct: 310 IKLWKSD 316
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 432 bits (1110), Expect = e-121, Method: Compositional matrix adjust.
Identities = 204/307 (66%), Positives = 246/307 (80%), Gaps = 8/307 (2%)
Query: 13 YTLTQTLNGHLRAISSVKFSHDGRLLASSSADKXXXXXXXXXXXXXXXXXXXXLQKFTGH 72
Y L TL GH +A+SSVKFS +G LASSSADK + +GH
Sbjct: 14 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE--------KTISGH 65
Query: 73 EQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVS 132
+ G+SD+ +SSDS LVSASDDKT+++WDV + CLKTL GH+NYVFC NFNPQSN+IVS
Sbjct: 66 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS 125
Query: 133 GAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCM 192
G+FDE+VRIWDVKTGKCLK LPAHSDPV+AV FNRDG++IV+SSYDGLCRIWD ++G C+
Sbjct: 126 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 185
Query: 193 KTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTF 252
KTLIDD+NPPVSFVKFSPNGK+IL TLDNTL+LW+YS GK LKTYTGH N KYCI + F
Sbjct: 186 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANF 245
Query: 253 SVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRT 312
SVT GK+IVSGSED+ VY+W LQ++++VQKL+GHTD VIS A HPTENIIAS AL+ND+T
Sbjct: 246 SVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKT 305
Query: 313 VKIWTQE 319
+K+W +
Sbjct: 306 IKLWKSD 312
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 432 bits (1110), Expect = e-121, Method: Compositional matrix adjust.
Identities = 204/307 (66%), Positives = 246/307 (80%), Gaps = 8/307 (2%)
Query: 13 YTLTQTLNGHLRAISSVKFSHDGRLLASSSADKXXXXXXXXXXXXXXXXXXXXLQKFTGH 72
Y L TL GH +A+SSVKFS +G LASSSADK + +GH
Sbjct: 13 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE--------KTISGH 64
Query: 73 EQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVS 132
+ G+SD+ +SSDS LVSASDDKT+++WDV + CLKTL GH+NYVFC NFNPQSN+IVS
Sbjct: 65 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS 124
Query: 133 GAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCM 192
G+FDE+VRIWDVKTGKCLK LPAHSDPV+AV FNRDG++IV+SSYDGLCRIWD ++G C+
Sbjct: 125 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 184
Query: 193 KTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTF 252
KTLIDD+NPPVSFVKFSPNGK+IL TLDNTL+LW+YS GK LKTYTGH N KYCI + F
Sbjct: 185 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANF 244
Query: 253 SVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRT 312
SVT GK+IVSGSED+ VY+W LQ++++VQKL+GHTD VIS A HPTENIIAS AL+ND+T
Sbjct: 245 SVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKT 304
Query: 313 VKIWTQE 319
+K+W +
Sbjct: 305 IKLWKSD 311
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 432 bits (1110), Expect = e-121, Method: Compositional matrix adjust.
Identities = 205/313 (65%), Positives = 249/313 (79%), Gaps = 9/313 (2%)
Query: 8 ESFRP-YTLTQTLNGHLRAISSVKFSHDGRLLASSSADKXXXXXXXXXXXXXXXXXXXXL 66
E +P Y L TL GH +A+SSVKFS +G LA+SSADK
Sbjct: 10 EFVKPNYALKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFE-------- 61
Query: 67 QKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQ 126
+ +GH+ G+SD+ +SSDS LVSASDDKT+++WDV + CLKTL GH+NYVFC NFNPQ
Sbjct: 62 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 121
Query: 127 SNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDA 186
SN+IVSG+FDE+VRIWDVKTGKCLK LPAHSDPV+AV FNRDG++IV+SSYDGLCRIWD
Sbjct: 122 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 181
Query: 187 STGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKY 246
++G C+KTLIDD+NPPVSFVKFSPNGK+IL TLDNTL+LW+YS GK LKTYTGH N KY
Sbjct: 182 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY 241
Query: 247 CISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGA 306
CI + FSVT GK+IVSGSED+ VY+W LQ++++VQKL+GHTD VIS A HPTENIIAS A
Sbjct: 242 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 301
Query: 307 LDNDRTVKIWTQE 319
L+ND+T+K+W +
Sbjct: 302 LENDKTIKLWKSD 314
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 432 bits (1110), Expect = e-121, Method: Compositional matrix adjust.
Identities = 204/307 (66%), Positives = 246/307 (80%), Gaps = 8/307 (2%)
Query: 13 YTLTQTLNGHLRAISSVKFSHDGRLLASSSADKXXXXXXXXXXXXXXXXXXXXLQKFTGH 72
Y L TL GH +A+SSVKFS +G LASSSADK + +GH
Sbjct: 13 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE--------KTISGH 64
Query: 73 EQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVS 132
+ G+SD+ +SSDS LVSASDDKT+++WDV + CLKTL GH+NYVFC NFNPQSN+IVS
Sbjct: 65 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS 124
Query: 133 GAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCM 192
G+FDE+VRIWDVKTGKCLK LPAHSDPV+AV FNRDG++IV+SSYDGLCRIWD ++G C+
Sbjct: 125 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 184
Query: 193 KTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTF 252
KTLIDD+NPPVSFVKFSPNGK+IL TLDNTL+LW+YS GK LKTYTGH N KYCI + F
Sbjct: 185 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANF 244
Query: 253 SVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRT 312
SVT GK+IVSGSED+ VY+W LQ++++VQKL+GHTD VIS A HPTENIIAS AL+ND+T
Sbjct: 245 SVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKT 304
Query: 313 VKIWTQE 319
+K+W +
Sbjct: 305 IKLWKSD 311
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 431 bits (1109), Expect = e-121, Method: Compositional matrix adjust.
Identities = 204/307 (66%), Positives = 246/307 (80%), Gaps = 8/307 (2%)
Query: 13 YTLTQTLNGHLRAISSVKFSHDGRLLASSSADKXXXXXXXXXXXXXXXXXXXXLQKFTGH 72
Y L TL GH +A+SSVKFS +G LASSSADK + +GH
Sbjct: 19 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE--------KTISGH 70
Query: 73 EQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVS 132
+ G+SD+ +SSDS LVSASDDKT+++WDV + CLKTL GH+NYVFC NFNPQSN+IVS
Sbjct: 71 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS 130
Query: 133 GAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCM 192
G+FDE+VRIWDVKTGKCLK LPAHSDPV+AV FNRDG++IV+SSYDGLCRIWD ++G C+
Sbjct: 131 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 190
Query: 193 KTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTF 252
KTLIDD+NPPVSFVKFSPNGK+IL TLDNTL+LW+YS GK LKTYTGH N KYCI + F
Sbjct: 191 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANF 250
Query: 253 SVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRT 312
SVT GK+IVSGSED+ VY+W LQ++++VQKL+GHTD VIS A HPTENIIAS AL+ND+T
Sbjct: 251 SVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKT 310
Query: 313 VKIWTQE 319
+K+W +
Sbjct: 311 IKLWKSD 317
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 431 bits (1109), Expect = e-121, Method: Compositional matrix adjust.
Identities = 204/307 (66%), Positives = 246/307 (80%), Gaps = 8/307 (2%)
Query: 13 YTLTQTLNGHLRAISSVKFSHDGRLLASSSADKXXXXXXXXXXXXXXXXXXXXLQKFTGH 72
Y L TL GH +A+SSVKFS +G LASSSADK + +GH
Sbjct: 9 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE--------KTISGH 60
Query: 73 EQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVS 132
+ G+SD+ +SSDS LVSASDDKT+++WDV + CLKTL GH+NYVFC NFNPQSN+IVS
Sbjct: 61 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS 120
Query: 133 GAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCM 192
G+FDE+VRIWDVKTGKCLK LPAHSDPV+AV FNRDG++IV+SSYDGLCRIWD ++G C+
Sbjct: 121 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 180
Query: 193 KTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTF 252
KTLIDD+NPPVSFVKFSPNGK+IL TLDNTL+LW+YS GK LKTYTGH N KYCI + F
Sbjct: 181 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANF 240
Query: 253 SVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRT 312
SVT GK+IVSGSED+ VY+W LQ++++VQKL+GHTD VIS A HPTENIIAS AL+ND+T
Sbjct: 241 SVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKT 300
Query: 313 VKIWTQE 319
+K+W +
Sbjct: 301 IKLWKSD 307
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 431 bits (1109), Expect = e-121, Method: Compositional matrix adjust.
Identities = 204/307 (66%), Positives = 246/307 (80%), Gaps = 8/307 (2%)
Query: 13 YTLTQTLNGHLRAISSVKFSHDGRLLASSSADKXXXXXXXXXXXXXXXXXXXXLQKFTGH 72
Y L TL GH +A+SSVKFS +G LASSSADK + +GH
Sbjct: 12 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE--------KTISGH 63
Query: 73 EQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVS 132
+ G+SD+ +SSDS LVSASDDKT+++WDV + CLKTL GH+NYVFC NFNPQSN+IVS
Sbjct: 64 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS 123
Query: 133 GAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCM 192
G+FDE+VRIWDVKTGKCLK LPAHSDPV+AV FNRDG++IV+SSYDGLCRIWD ++G C+
Sbjct: 124 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 183
Query: 193 KTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTF 252
KTLIDD+NPPVSFVKFSPNGK+IL TLDNTL+LW+YS GK LKTYTGH N KYCI + F
Sbjct: 184 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANF 243
Query: 253 SVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRT 312
SVT GK+IVSGSED+ VY+W LQ++++VQKL+GHTD VIS A HPTENIIAS AL+ND+T
Sbjct: 244 SVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKT 303
Query: 313 VKIWTQE 319
+K+W +
Sbjct: 304 IKLWKSD 310
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 431 bits (1108), Expect = e-121, Method: Compositional matrix adjust.
Identities = 204/307 (66%), Positives = 246/307 (80%), Gaps = 8/307 (2%)
Query: 13 YTLTQTLNGHLRAISSVKFSHDGRLLASSSADKXXXXXXXXXXXXXXXXXXXXLQKFTGH 72
Y L TL GH +A+SSVKFS +G LASSSADK + +GH
Sbjct: 19 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE--------KTISGH 70
Query: 73 EQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVS 132
+ G+SD+ +SSDS LVSASDDKT+++WDV + CLKTL GH+NYVFC NFNPQSN+IVS
Sbjct: 71 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS 130
Query: 133 GAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCM 192
G+FDE+VRIWDVKTGKCLK LPAHSDPV+AV FNRDG++IV+SSYDGLCRIWD ++G C+
Sbjct: 131 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 190
Query: 193 KTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTF 252
KTLIDD+NPPVSFVKFSPNGK+IL TLDNTL+LW+YS GK LKTYTGH N KYCI + F
Sbjct: 191 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANF 250
Query: 253 SVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRT 312
SVT GK+IVSGSED+ VY+W LQ++++VQKL+GHTD VIS A HPTENIIAS AL+ND+T
Sbjct: 251 SVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKT 310
Query: 313 VKIWTQE 319
+K+W +
Sbjct: 311 IKLWKSD 317
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 430 bits (1106), Expect = e-121, Method: Compositional matrix adjust.
Identities = 203/307 (66%), Positives = 245/307 (79%), Gaps = 8/307 (2%)
Query: 13 YTLTQTLNGHLRAISSVKFSHDGRLLASSSADKXXXXXXXXXXXXXXXXXXXXLQKFTGH 72
Y L TL GH +A+SSVKFS +G LASSSADK + +GH
Sbjct: 16 YALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE--------KTISGH 67
Query: 73 EQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVS 132
+ G+SD+ +SSDS LVSASDDKT+++WDV + CLKTL GH+NYVFC NFNPQSN+IVS
Sbjct: 68 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS 127
Query: 133 GAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCM 192
G+FDE+VRIWDVKTG CLK LPAHSDPV+AV FNRDG++IV+SSYDGLCRIWD ++G C+
Sbjct: 128 GSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 187
Query: 193 KTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTF 252
KTLIDD+NPPVSFVKFSPNGK+IL TLDNTL+LW+YS GK LKTYTGH N KYCI + F
Sbjct: 188 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANF 247
Query: 253 SVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRT 312
SVT GK+IVSGSED+ VY+W LQ++++VQKL+GHTD VIS A HPTENIIAS AL+ND+T
Sbjct: 248 SVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKT 307
Query: 313 VKIWTQE 319
+K+W +
Sbjct: 308 IKLWKSD 314
Score = 112 bits (279), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 69/219 (31%), Positives = 110/219 (50%), Gaps = 7/219 (3%)
Query: 103 PTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTA 162
P + TL GHT V V F+P + S + D+ ++IW GK K + H ++
Sbjct: 14 PNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 73
Query: 163 VDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDN 222
V ++ D ++V++S D +IWD S+G C+KTL N V F+P I+ G+ D
Sbjct: 74 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSN-YVFCCNFNPQSNLIVSGSFDE 132
Query: 223 TLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQK 282
++R+W+ TG LKT H++ +S+ +G IVS S D +W+ S + ++
Sbjct: 133 SVRIWDVKTGMCLKTLPAHSDP---VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 189
Query: 283 LEGHTDPVIS-VASHPTENIIASGALDNDRTVKIWTQEK 320
L +P +S V P I + LDN T+K+W K
Sbjct: 190 LIDDDNPPVSFVKFSPNGKYILAATLDN--TLKLWDYSK 226
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 429 bits (1103), Expect = e-120, Method: Compositional matrix adjust.
Identities = 205/313 (65%), Positives = 249/313 (79%), Gaps = 9/313 (2%)
Query: 8 ESFRP-YTLTQTLNGHLRAISSVKFSHDGRLLASSSADKXXXXXXXXXXXXXXXXXXXXL 66
E +P Y L TL GH +A+SSVKFS +G LASSSADK
Sbjct: 10 EFVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-------- 61
Query: 67 QKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQ 126
+ +GH+ G+SD+ +SSDS LVSASDDKT+++WDV + CLKTL GH+NYVFC NFNPQ
Sbjct: 62 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 121
Query: 127 SNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDA 186
SN+IVSG+FDE+VRIWDVKTGKCLK LPAHSDPV+AV FNRDG++IV+SSYDGLCRIWD
Sbjct: 122 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 181
Query: 187 STGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKY 246
++G C+KTLIDD+NPPVSFVKFSPNGK+IL TLDNTL+LW+YS GK LKTYTGH N KY
Sbjct: 182 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY 241
Query: 247 CISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGA 306
CI + FSVT GK+IVSGSED+ VY+W LQ++++VQKL+GHTD VIS A HPTENIIAS A
Sbjct: 242 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 301
Query: 307 LDNDRTVKIWTQE 319
L+ND+T+K++ +
Sbjct: 302 LENDKTIKLYKSD 314
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 428 bits (1101), Expect = e-120, Method: Compositional matrix adjust.
Identities = 205/313 (65%), Positives = 249/313 (79%), Gaps = 9/313 (2%)
Query: 8 ESFRP-YTLTQTLNGHLRAISSVKFSHDGRLLASSSADKXXXXXXXXXXXXXXXXXXXXL 66
E +P Y L TL GH +A+SSVKFS +G LASSSADK
Sbjct: 10 EFVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-------- 61
Query: 67 QKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQ 126
+ +GH+ G+SD+ +SSDS LVSASDDKT+++WDV + CLKTL GH+NYVFC NFNPQ
Sbjct: 62 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 121
Query: 127 SNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDA 186
SN+IVSG+FDE+VRIWDVKTGKCLK LPAHSDPV+AV FNRDG++IV+SSYDGLCRIWD
Sbjct: 122 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 181
Query: 187 STGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKY 246
++G C+KTLIDD+NPPVSFVKFSPNGK+IL TLDNTL+LW+YS GK LKTYTGH N KY
Sbjct: 182 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY 241
Query: 247 CISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGA 306
CI + FSVT GK+IVSGSED+ VY+W LQ++++VQKL+GHTD VIS A HPTENIIAS A
Sbjct: 242 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 301
Query: 307 LDNDRTVKIWTQE 319
L+ND+T+K++ +
Sbjct: 302 LENDKTIKLFKSD 314
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 428 bits (1100), Expect = e-120, Method: Compositional matrix adjust.
Identities = 202/307 (65%), Positives = 244/307 (79%), Gaps = 8/307 (2%)
Query: 13 YTLTQTLNGHLRAISSVKFSHDGRLLASSSADKXXXXXXXXXXXXXXXXXXXXLQKFTGH 72
Y L TL GH +A+SSVKFS +G LASSSADK + +GH
Sbjct: 16 YALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE--------KTISGH 67
Query: 73 EQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVS 132
+ G+SD+ +SSDS LVSASDDKT+++WDV + CLKTL GH+NYVFC NFNPQSN+IVS
Sbjct: 68 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS 127
Query: 133 GAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCM 192
G+FDE+VRIWDVKTG CLK LPAHSDPV+AV FNRDG++IV+SSYDGLCRIWD ++G C+
Sbjct: 128 GSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 187
Query: 193 KTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTF 252
KTLIDD+NPPVSFVKFSPNGK+IL TLDN L+LW+YS GK LKTYTGH N KYCI + F
Sbjct: 188 KTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCIFANF 247
Query: 253 SVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRT 312
SVT GK+IVSGSED+ VY+W LQ++++VQKL+GHTD VIS A HPTENIIAS AL+ND+T
Sbjct: 248 SVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKT 307
Query: 313 VKIWTQE 319
+K+W +
Sbjct: 308 IKLWKSD 314
Score = 112 bits (281), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 69/219 (31%), Positives = 110/219 (50%), Gaps = 7/219 (3%)
Query: 103 PTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTA 162
P + TL GHT V V F+P + S + D+ ++IW GK K + H ++
Sbjct: 14 PNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 73
Query: 163 VDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDN 222
V ++ D ++V++S D +IWD S+G C+KTL N V F+P I+ G+ D
Sbjct: 74 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSN-YVFCCNFNPQSNLIVSGSFDE 132
Query: 223 TLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQK 282
++R+W+ TG LKT H++ +S+ +G IVS S D +W+ S + ++
Sbjct: 133 SVRIWDVKTGMCLKTLPAHSDP---VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 189
Query: 283 LEGHTDPVIS-VASHPTENIIASGALDNDRTVKIWTQEK 320
L +P +S V P I + LDND +K+W K
Sbjct: 190 LIDDDNPPVSFVKFSPNGKYILAATLDND--LKLWDYSK 226
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 173 bits (439), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 111/311 (35%), Positives = 173/311 (55%), Gaps = 20/311 (6%)
Query: 11 RPYTLTQTLNGHLRAISSVKFSHDGRLLASSSADKXXXXXXXXXXXXXXXXXXXXLQKFT 70
R L QTL GH ++ V FS DG+ +AS+S DK LQ T
Sbjct: 45 RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQL---------LQTLT 95
Query: 71 GHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMI 130
GH V + FS D + + SASDDKT++LW+ L+TL GH++ V+ V F+P I
Sbjct: 96 GHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTI 154
Query: 131 VSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGH 190
S + D+TV++W+ + G+ L+ L HS V V F+ DG I ++S D ++W+ + G
Sbjct: 155 ASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQ 212
Query: 191 CMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISS 250
++TL + V V FSP+G+ I + D T++LWN + G++L+T TGH++S ++
Sbjct: 213 LLQTLT-GHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVNGVA- 269
Query: 251 TFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDND 310
F +G+ I S S+D V LW ++ +++Q L GH+ V VA P IAS + +D
Sbjct: 270 -FR-PDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASAS--DD 324
Query: 311 RTVKIWTQEKE 321
+TVK+W + +
Sbjct: 325 KTVKLWNRNGQ 335
Score = 173 bits (438), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 112/311 (36%), Positives = 173/311 (55%), Gaps = 20/311 (6%)
Query: 11 RPYTLTQTLNGHLRAISSVKFSHDGRLLASSSADKXXXXXXXXXXXXXXXXXXXXLQKFT 70
R L QTL GH ++ V FS DG+ +AS+S DK LQ T
Sbjct: 168 RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQL---------LQTLT 218
Query: 71 GHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMI 130
GH V + FS D + + SASDDKT++LW+ L+TL GH++ V V F P I
Sbjct: 219 GHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVNGVAFRPDGQTI 277
Query: 131 VSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGH 190
S + D+TV++W+ + G+ L+ L HS V V F+ DG I ++S D ++W+ + G
Sbjct: 278 ASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQ 335
Query: 191 CMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISS 250
++TL + V V FSP+G+ I + D T++LWN + G++L+T TGH++S ++
Sbjct: 336 HLQTLT-GHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVA- 392
Query: 251 TFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDND 310
FS +G+ I S S+D V LW ++ +++Q L GH+ V VA P + IAS + +D
Sbjct: 393 -FS-PDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDDQTIASAS--DD 447
Query: 311 RTVKIWTQEKE 321
+TVK+W + +
Sbjct: 448 KTVKLWNRNGQ 458
Score = 169 bits (427), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 111/306 (36%), Positives = 170/306 (55%), Gaps = 20/306 (6%)
Query: 11 RPYTLTQTLNGHLRAISSVKFSHDGRLLASSSADKXXXXXXXXXXXXXXXXXXXXLQKFT 70
R L QTL GH ++ V FS DG+ +AS+S DK LQ T
Sbjct: 291 RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQH---------LQTLT 341
Query: 71 GHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMI 130
GH V + FS D + + SASDDKT++LW+ L+TL GH++ V V F+P I
Sbjct: 342 GHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTI 400
Query: 131 VSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGH 190
S + D+TV++W+ + G+ L+ L HS V V F+ D I ++S D ++W+ + G
Sbjct: 401 ASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRN-GQ 458
Query: 191 CMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISS 250
++TL + V V FSP+G+ I + D T++LWN + G++L+T TGH++S ++
Sbjct: 459 LLQTLT-GHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVA- 515
Query: 251 TFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDND 310
FS +G+ I S S+D V LW ++ +++Q L GH+ V VA P IAS + +D
Sbjct: 516 -FS-PDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASAS--SD 570
Query: 311 RTVKIW 316
+TVK+W
Sbjct: 571 KTVKLW 576
Score = 154 bits (388), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 91/254 (35%), Positives = 150/254 (59%), Gaps = 11/254 (4%)
Query: 68 KFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQS 127
+ H V + FS D + + SASDDKT++LW+ L+TL GH++ V+ V F+P
Sbjct: 11 RLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDG 69
Query: 128 NMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDAS 187
I S + D+TV++W+ + G+ L+ L HS V V F+ DG I ++S D ++W+ +
Sbjct: 70 QTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN 128
Query: 188 TGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYC 247
G ++TL + V V FSP+G+ I + D T++LWN + G++L+T TGH++S +
Sbjct: 129 -GQLLQTLT-GHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWG 185
Query: 248 ISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGAL 307
++ FS +G+ I S S+D V LW ++ +++Q L GH+ V VA P IAS +
Sbjct: 186 VA--FS-PDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASAS- 240
Query: 308 DNDRTVKIWTQEKE 321
+D+TVK+W + +
Sbjct: 241 -DDKTVKLWNRNGQ 253
Score = 129 bits (324), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 79/218 (36%), Positives = 117/218 (53%), Gaps = 13/218 (5%)
Query: 11 RPYTLTQTLNGHLRAISSVKFSHDGRLLASSSADKXXXXXXXXXXXXXXXXXXXXLQKFT 70
R L QTL GH ++ V FS DG+ +AS+S DK LQ T
Sbjct: 373 RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQL---------LQTLT 423
Query: 71 GHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMI 130
GH V + FS D + + SASDDKT++LW+ L+TL GH++ V V F+P I
Sbjct: 424 GHSSSVWGVAFSPDDQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTI 482
Query: 131 VSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGH 190
S + D+TV++W+ + G+ L+ L HS V V F+ DG I ++S D ++W+ + G
Sbjct: 483 ASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQ 540
Query: 191 CMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWN 228
++TL + V V FSP+G+ I + D T++LWN
Sbjct: 541 LLQTLTG-HSSSVWGVAFSPDGQTIASASSDKTVKLWN 577
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 149 bits (376), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 82/268 (30%), Positives = 138/268 (51%), Gaps = 26/268 (9%)
Query: 69 FTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSN 128
GH V D+ F + L S S D TI+LWD C++T+ GH + V V+ P +
Sbjct: 146 LKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGD 205
Query: 129 MIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDAST 188
IVS + D+T+++W+V+TG C+K H + V V N+DGT+I + S D R+W +T
Sbjct: 206 HIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVAT 265
Query: 189 GHCMKTLIDDENPPVSFVKFSPN--------------------GKFILVGTLDNTLRLWN 228
C K + + V + ++P G F+L G+ D T+++W+
Sbjct: 266 KEC-KAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWD 324
Query: 229 YSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTD 288
STG L T GH N + + GK+I+S ++D + +W+ ++++ ++ L H
Sbjct: 325 VSTGMCLMTLVGHDN---WVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEH 381
Query: 289 PVISVASHPTENIIASGALDNDRTVKIW 316
V S+ H T + +G++ D+TVK+W
Sbjct: 382 FVTSLDFHKTAPYVVTGSV--DQTVKVW 407
Score = 141 bits (356), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 90/281 (32%), Positives = 132/281 (46%), Gaps = 32/281 (11%)
Query: 15 LTQTLNGHLRAISSVKFSHDGRLLASSSADKXXXXXXXXXXXXXXXXXXXXLQKFTGHEQ 74
+TL GH ++ + F H G+LLAS SAD ++ GH+
Sbjct: 142 FERTLKGHTDSVQDISFDHSGKLLASCSAD--------MTIKLWDFQGFECIRTMHGHDH 193
Query: 75 GVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGA 134
VS + + +VSAS DKTI++W+V T C+KT GH +V V N +I S +
Sbjct: 194 NVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCS 253
Query: 135 FDETVRIWDVKTGKCLKVLPAHSDPVTAVDF--------------------NRDGTMIVT 174
D+TVR+W V T +C L H V + + + G +++
Sbjct: 254 NDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLS 313
Query: 175 SSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKI 234
S D ++WD STG C+ TL+ +N V V F GKFIL D TLR+W+Y +
Sbjct: 314 GSRDKTIKMWDVSTGMCLMTLVGHDN-WVRGVLFHSGGKFILSCADDKTLRVWDYKNKRC 372
Query: 235 LKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQ 275
+KT H + + S F T Y+V+GS D V +WE +
Sbjct: 373 MKTLNAHEH--FVTSLDFHKT-APYVVTGSVDQTVKVWECR 410
Score = 121 bits (303), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 74/265 (27%), Positives = 135/265 (50%), Gaps = 20/265 (7%)
Query: 69 FTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSN 128
+GH V+ ++F +VSAS+D TI++WD T +TL GHT+ V ++F+
Sbjct: 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGK 163
Query: 129 MIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDAST 188
++ S + D T+++WD + +C++ + H V++V +G IV++S D ++W+ T
Sbjct: 164 LLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQT 223
Query: 189 GHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCI 248
G+C+KT V V+ + +G I + D T+R+W +T + H + CI
Sbjct: 224 GYCVKTFT-GHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECI 282
Query: 249 S----STFSVTN-------------GKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVI 291
S S++S + G +++SGS D + +W++ + + L GH + V
Sbjct: 283 SWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVR 342
Query: 292 SVASHPTENIIASGALDNDRTVKIW 316
V H I S A +D+T+++W
Sbjct: 343 GVLFHSGGKFILSCA--DDKTLRVW 365
Score = 112 bits (281), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 68/242 (28%), Positives = 117/242 (48%), Gaps = 29/242 (11%)
Query: 7 LESFRPYTLTQTLNGHLRAISSVKFSHDGRLLASSSADKXXXXXXXXXXXXXXXXXXXXL 66
L F+ + +T++GH +SSV +G + S+S DK +
Sbjct: 176 LWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYC--------V 227
Query: 67 QKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQ 126
+ FTGH + V + + D + S S+D+T+R+W V T C L H + V C+++ P+
Sbjct: 228 KTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPE 287
Query: 127 SN--------------------MIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFN 166
S+ ++SG+ D+T+++WDV TG CL L H + V V F+
Sbjct: 288 SSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFH 347
Query: 167 RDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRL 226
G I++ + D R+WD CMKTL E+ V+ + F +++ G++D T+++
Sbjct: 348 SGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEH-FVTSLDFHKTAPYVVTGSVDQTVKV 406
Query: 227 WN 228
W
Sbjct: 407 WE 408
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 64/124 (51%), Gaps = 5/124 (4%)
Query: 193 KTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTF 252
K + PV+ V F P ++ + D T+++W+Y TG +T GHT+S IS
Sbjct: 101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDH 160
Query: 253 SVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRT 312
S GK + S S D + LW+ Q + ++ + GH V SV+ P + I S + D+T
Sbjct: 161 S---GKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSAS--RDKT 215
Query: 313 VKIW 316
+K+W
Sbjct: 216 IKMW 219
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 138 bits (348), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 85/256 (33%), Positives = 145/256 (56%), Gaps = 25/256 (9%)
Query: 66 LQKFTGHEQGVSDLVFSSDSR--FLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNF 123
L+ GH GV +SS R ++S S D+T+++W+ T C+ TL GHT+ V C++
Sbjct: 152 LRTLVGHTGGV----WSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHL 207
Query: 124 NPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRI 183
+ + +VSG+ D T+R+WD++TG+CL VL H V V + DG +V+ +YD + ++
Sbjct: 208 HEKR--VVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKV 263
Query: 184 WDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTN 243
WD T C+ TL N S +F +G ++ G+LD ++R+W+ TG + T TGH +
Sbjct: 264 WDPETETCLHTLQGHTNRVYSL-QF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQS 320
Query: 244 SKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEG---HTDPVISVASHPTEN 300
++S + + +VSG+ DS V +W++++ + +Q L+G H V + +
Sbjct: 321 ----LTSGMELKD-NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFV 375
Query: 301 IIASGALDNDRTVKIW 316
I +S +D TVK+W
Sbjct: 376 ITSS----DDGTVKLW 387
Score = 130 bits (326), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 73/229 (31%), Positives = 126/229 (55%), Gaps = 16/229 (6%)
Query: 88 LVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTG 147
+VS SDD T+++W T CL+TL+GHT V+ + N+I+SG+ D T+++W+ +TG
Sbjct: 132 IVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQM--RDNIIISGSTDRTLKVWNAETG 189
Query: 148 KCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVK 207
+C+ L H+ V + + +V+ S D R+WD TG C+ L+ V V+
Sbjct: 190 ECIHTLYGHTSTVRCMHLHEK--RVVSGSRDATLRVWDIETGQCLHVLM-GHVAAVRCVQ 246
Query: 208 FSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDS 267
+ +G+ ++ G D +++W+ T L T GHTN Y + +G ++VSGS D+
Sbjct: 247 Y--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQ-----FDGIHVVSGSLDT 299
Query: 268 CVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRTVKIW 316
+ +W++++ + L GH ++ +NI+ SG + D TVKIW
Sbjct: 300 SIRVWDVETGNCIHTLTGHQS--LTSGMELKDNILVSG--NADSTVKIW 344
Score = 122 bits (305), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 66/202 (32%), Positives = 116/202 (57%), Gaps = 15/202 (7%)
Query: 85 SRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDV 144
+ +VS S D T+R+WD+ T CL L+GH V CV ++ + +VSGA+D V++WD
Sbjct: 209 EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRR--VVSGAYDFMVKVWDP 266
Query: 145 KTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVS 204
+T CL L H++ V ++ F DG +V+ S D R+WD TG+C+ TL ++ S
Sbjct: 267 ETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSL-TS 323
Query: 205 FVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTG---HTNSKYCISSTFSVTNGKYIV 261
++ N ++ G D+T+++W+ TG+ L+T G H ++ C+ N +++
Sbjct: 324 GMELKDN--ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQ-----FNKNFVI 376
Query: 262 SGSEDSCVYLWELQSRKVVQKL 283
+ S+D V LW+L++ + ++ L
Sbjct: 377 TSSDDGTVKLWDLKTGEFIRNL 398
Score = 106 bits (264), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 98/173 (56%), Gaps = 10/173 (5%)
Query: 66 LQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNP 125
L GH V + + D R +VS + D +++WD T TCL TL GHTN V+ + F+
Sbjct: 232 LHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFD- 288
Query: 126 QSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWD 185
+VSG+ D ++R+WDV+TG C+ L H + ++ + ++V+ + D +IWD
Sbjct: 289 -GIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDN--ILVSGNADSTVKIWD 345
Query: 186 ASTGHCMKTLI--DDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILK 236
TG C++TL + V+ ++F+ N F++ + D T++LW+ TG+ ++
Sbjct: 346 IKTGQCLQTLQGPNKHQSAVTCLQFNKN--FVITSSDDGTVKLWDLKTGEFIR 396
Score = 99.0 bits (245), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 64/187 (34%), Positives = 93/187 (49%), Gaps = 19/187 (10%)
Query: 17 QTLNGHLRAISSVKFSHDGRLLASSSADKXXXXXXXXXXXXXXXXXXXXLQKFTGHEQGV 76
L GH+ A+ V++ DGR + S + D L GH V
Sbjct: 233 HVLMGHVAAVRCVQY--DGRRVVSGAYD--------FMVKVWDPETETCLHTLQGHTNRV 282
Query: 77 SDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFD 136
L F D +VS S D +IR+WDV T C+ TL GH + + N++VSG D
Sbjct: 283 YSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQS--LTSGMELKDNILVSGNAD 338
Query: 137 ETVRIWDVKTGKCLKVLPA---HSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMK 193
TV+IWD+KTG+CL+ L H VT + FN++ ++TSS DG ++WD TG ++
Sbjct: 339 STVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKN--FVITSSDDGTVKLWDLKTGEFIR 396
Query: 194 TLIDDEN 200
L+ E+
Sbjct: 397 NLVTLES 403
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 70/143 (48%), Gaps = 17/143 (11%)
Query: 14 TLTQTLNGHLRAISSVKFSHDGRLLASSSADKXXXXXXXXXXXXXXXXXXXXLQKFTGHE 73
T TL GH + S++F DG + S S D + TGH+
Sbjct: 270 TCLHTLQGHTNRVYSLQF--DGIHVVSGSLD--------TSIRVWDVETGNCIHTLTGHQ 319
Query: 74 QGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIG---HTNYVFCVNFNPQSNMI 130
S + + LVS + D T+++WD+ T CL+TL G H + V C+ FN N +
Sbjct: 320 SLTSGMELKDN--ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFV 375
Query: 131 VSGAFDETVRIWDVKTGKCLKVL 153
++ + D TV++WD+KTG+ ++ L
Sbjct: 376 ITSSDDGTVKLWDLKTGEFIRNL 398
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 138 bits (347), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 85/270 (31%), Positives = 138/270 (51%), Gaps = 31/270 (11%)
Query: 76 VSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAF 135
+ + FS D +FL + ++D+ IR+WD+ + L GH ++ +++ P + +VSG+
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSG 185
Query: 136 DETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTL 195
D TVRIWD++TG+C L T DG I S D R+WD+ TG ++ L
Sbjct: 186 DRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERL 245
Query: 196 IDDENP-------PVSFVKFSPNGKFILVGTLDNTLRLWNY------------STGKILK 236
D EN V V F+ +G+ ++ G+LD +++LWN ++G
Sbjct: 246 -DSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEV 304
Query: 237 TYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASH 296
TY GH + +++T N +YI+SGS+D V W+ +S + L+GH + VISVA
Sbjct: 305 TYIGHKDFVLSVATT---QNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVA 361
Query: 297 ------PTENIIASGALDNDRTVKIWTQEK 320
P N+ A+G+ D +IW +K
Sbjct: 362 NGSSLGPEYNVFATGS--GDCKARIWKYKK 389
Score = 110 bits (276), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 75/224 (33%), Positives = 115/224 (51%), Gaps = 29/224 (12%)
Query: 117 YVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSS 176
Y+ V F+P + +GA D +RIWD++ K + +L H + ++D+ G +V+ S
Sbjct: 125 YIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGS 184
Query: 177 YDGLCRIWDASTGHCMKTL-IDDENPPVSFVKFSP-NGKFILVGTLDNTLRLWNYSTGKI 234
D RIWD TG C TL I+D V+ V SP +GK+I G+LD +R+W+ TG +
Sbjct: 185 GDRTVRIWDLRTGQCSLTLSIEDG---VTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFL 241
Query: 235 L-------KTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLE--- 284
+ ++ TGH +S Y + T +G+ +VSGS D V LW LQ+ +
Sbjct: 242 VERLDSENESGTGHKDSVYSVVFT---RDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPN 298
Query: 285 ---------GHTDPVISVASHPTENIIASGALDNDRTVKIWTQE 319
GH D V+SVA+ + I SG+ DR V W ++
Sbjct: 299 SGTCEVTYIGHKDFVLSVATTQNDEYILSGS--KDRGVLFWDKK 340
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 55/135 (40%), Gaps = 10/135 (7%)
Query: 21 GHLRAISSVKFSHDGRLLASSSADKXXX----XXXXXXXXXXXXXXXXXLQKFTGHEQGV 76
GH ++ SV F+ DG+ + S S D+ + GH+ V
Sbjct: 254 GHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFV 313
Query: 77 SDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCV------NFNPQSNMI 130
+ + + +++S S D+ + WD + L L GH N V V + P+ N+
Sbjct: 314 LSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVF 373
Query: 131 VSGAFDETVRIWDVK 145
+G+ D RIW K
Sbjct: 374 ATGSGDCKARIWKYK 388
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 120 bits (302), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 75/235 (31%), Positives = 124/235 (52%), Gaps = 17/235 (7%)
Query: 84 DSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWD 143
D + +VS D TI++WD T C + L GHT V C+ ++ + +I++G+ D TVR+WD
Sbjct: 142 DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDER--VIITGSSDSTVRVWD 199
Query: 144 VKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDAS--TGHCMKTLIDDENP 201
V TG+ L L H + V + FN M+VT S D +WD + T ++ ++
Sbjct: 200 VNTGEMLNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRA 257
Query: 202 PVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIV 261
V+ V F + K+I+ + D T+++WN ST + ++T GH C+ + +V
Sbjct: 258 AVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQ-----YRDRLVV 310
Query: 262 SGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRTVKIW 316
SGS D+ + LW+++ ++ LEGH + V + I SGA D +K+W
Sbjct: 311 SGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKR--IVSGAYDG--KIKVW 361
Score = 102 bits (254), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 66/209 (31%), Positives = 108/209 (51%), Gaps = 17/209 (8%)
Query: 69 FTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSN 128
TGH V L D R +++ S D T+R+WDV T L TLI H V + FN +
Sbjct: 169 LTGHTGSV--LCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFN--NG 224
Query: 129 MIVSGAFDETVRIWDVKTGKCL---KVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWD 185
M+V+ + D ++ +WD+ + + +VL H V VDF D IV++S D ++W+
Sbjct: 225 MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWN 282
Query: 186 ASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSK 245
ST ++TL + ++ +++ + ++ G+ DNT+RLW+ G L+ GH
Sbjct: 283 TSTCEFVRTL-NGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELV 339
Query: 246 YCISSTFSVTNGKYIVSGSEDSCVYLWEL 274
CI + K IVSG+ D + +W+L
Sbjct: 340 RCIR-----FDNKRIVSGAYDGKIKVWDL 363
Score = 89.4 bits (220), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 88/181 (48%), Gaps = 25/181 (13%)
Query: 14 TLTQTLNGHLRAISSVKFSHDGRLLASSSADKXXXXXXXXXXXXXXXXXXXXLQKFTGHE 73
TL + L GH A++ V F D + + S+S D+ ++ GH+
Sbjct: 247 TLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEF--------VRTLNGHK 296
Query: 74 QGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSG 133
+G++ L + R +VS S D TIRLWD+ CL+ L GH V C+ F+ + IVSG
Sbjct: 297 RGIACLQYRD--RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD--NKRIVSG 352
Query: 134 AFDETVRIWDVKTG---------KCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIW 184
A+D +++WD+ CL+ L HS V + F D IV+SS+D IW
Sbjct: 353 AYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIW 410
Query: 185 D 185
D
Sbjct: 411 D 411
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 82/177 (46%), Gaps = 25/177 (14%)
Query: 2 SSDQSLESFRPYT--LTQTLNGHLRAISSVKFSHDGRLLASSSADKXXXXXXXXXXXXXX 59
S D++++ + T +TLNGH R I+ +++ RL+ S S+D
Sbjct: 273 SGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGAC-- 328
Query: 60 XXXXXXLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDV--------PTAT-CLKT 110
L+ GHE+ V + F D++ +VS + D I++WD+ P T CL+T
Sbjct: 329 ------LRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRT 380
Query: 111 LIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNR 167
L+ H+ VF + F+ IVS + D+T+ IWD + P S T +R
Sbjct: 381 LVEHSGRVFRLQFD--EFQIVSSSHDDTILIWDFLNDPAAQAEPPRSPSRTYTYISR 435
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 117 bits (293), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 78/262 (29%), Positives = 135/262 (51%), Gaps = 22/262 (8%)
Query: 67 QKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQ 126
++ GH VSD+ S++ F VSAS D ++RLW++ C +GHT V V F+P
Sbjct: 61 RRLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPD 120
Query: 127 SNMIVSGAFDETVRIWDVKTGKCLKVLP--AHSDPVTAVDFNR--DGTMIVTSSYDGLCR 182
+ IVSG D +R+W+VK G+C+ L AH+D V+ V F+ D +IV+ +D L +
Sbjct: 121 NRQIVSGGRDNALRVWNVK-GECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVK 179
Query: 183 IWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKIL-KTYTGH 241
+WD +TG + L N V+ V SP+G D RLW+ + G+ L + G
Sbjct: 180 VWDLATGRLVTDLKGHTN-YVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMAAGA 238
Query: 242 TNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKL----EGHTDPV---ISVA 294
++ C S +Y + + + + +++L+++ ++ +L +G V +S+A
Sbjct: 239 PINQICFSPN------RYWMCAATEKGIRIFDLENKDIIVELAPEHQGSKKIVPECVSIA 292
Query: 295 SHPTENIIASGALDNDRTVKIW 316
+ + SG DN +++W
Sbjct: 293 WSADGSTLYSGYTDN--VIRVW 312
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 91/218 (41%), Gaps = 17/218 (7%)
Query: 21 GHLRAISSVKFSHDGRLLASSSADKXXXXXXXXXXXXXXXXXXXXLQKFTGHEQGVSDLV 80
GH + + SV FS D R + S D H VS +
Sbjct: 107 GHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVKGECMHTLSRG-------AHTDWVSCVR 159
Query: 81 FSS--DSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDET 138
FS D+ +VS D +++WD+ T + L GHTNYV V +P ++ S D
Sbjct: 160 FSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGV 219
Query: 139 VRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDD 198
R+WD+ G+ L + A + P+ + F+ + + ++ G+ RI+D + L +
Sbjct: 220 ARLWDLTKGEALSEMAAGA-PINQICFSPNRYWMCAATEKGI-RIFDLENKDIIVELAPE 277
Query: 199 EN------PPVSFVKFSPNGKFILVGTLDNTLRLWNYS 230
P + +S +G + G DN +R+W S
Sbjct: 278 HQGSKKIVPECVSIAWSADGSTLYSGYTDNVIRVWGVS 315
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 56/137 (40%), Gaps = 17/137 (12%)
Query: 15 LTQTLNGHLRAISSVKFSHDGRLLASSSADKXXXXXXXXXXXXXXXXXXXXLQKFTGHEQ 74
L L GH ++SV S DG L ASS D L +
Sbjct: 188 LVTDLKGHTNYVTSVTVSPDGSLCASSDKDG--------VARLWDLTKGEALSEMAAGAP 239
Query: 75 GVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLI----GHTNYV-FCVN--FNPQS 127
++ + FS + R+ + A+ +K IR++D+ + L G V CV+ ++
Sbjct: 240 -INQICFSPN-RYWMCAATEKGIRIFDLENKDIIVELAPEHQGSKKIVPECVSIAWSADG 297
Query: 128 NMIVSGAFDETVRIWDV 144
+ + SG D +R+W V
Sbjct: 298 STLYSGYTDNVIRVWGV 314
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 114 bits (286), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 82/314 (26%), Positives = 146/314 (46%), Gaps = 29/314 (9%)
Query: 22 HLRAISSVKFSHDGRLLASSSADKXXXXXXXXXXXXXXXXXXXXLQKFTGHEQGVSDLVF 81
H A+ FS DG+ +AS ADK L HE V F
Sbjct: 621 HTDAVYHACFSQDGQRIASCGADK--------TLQVFKAETGEKLLDIKAHEDEVLCCAF 672
Query: 82 SSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSN--MIVSGAFDETV 139
SSD ++ + S DK +++WD T + T H+ V C +F +SN ++ +G+ D +
Sbjct: 673 SSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFL 732
Query: 140 RIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTL---- 195
++WD+ +C + H++ V F+ D ++ + S DG R+WD + + K++
Sbjct: 733 KLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKR 792
Query: 196 --IDDENPP------VSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNS-KY 246
+ E+PP V +S +G I+V + L +++G + + +TGH ++ +Y
Sbjct: 793 FFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQY 852
Query: 247 CISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGA 306
C FS + +++ S+ CV LW + SR V GH V V P + + +
Sbjct: 853 C---DFSPYDHLAVIALSQ-YCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTAS 908
Query: 307 LDNDRTVKIWTQEK 320
+D+T+++W +K
Sbjct: 909 --DDQTIRVWETKK 920
Score = 75.1 bits (183), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 64/234 (27%), Positives = 100/234 (42%), Gaps = 21/234 (8%)
Query: 21 GHLRAISSVKFSHDGRLLASSSADKXXXXXXXXXXXXXXXXXXXXLQKFTGHEQGVSDLV 80
GH +A+ ++F+ DG+ L SSS D H++ V D
Sbjct: 1008 GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF---------LQAHQETVKDFR 1058
Query: 81 FSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVR 140
DSR L+S S D T+++W+V T + H V + + S + D+T +
Sbjct: 1059 LLQDSR-LLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAK 1117
Query: 141 IWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGH----CMKTLI 196
IW L L H+ V F+ DG ++ T +G RIW+ S G C +
Sbjct: 1118 IWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISV 1177
Query: 197 DDENPP----VSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKT-YTGHTNSK 245
++ V+ V FSP+ K ++ + L+ WN +TG +T YT TN K
Sbjct: 1178 EEGTATHGGWVTDVCFSPDSKTLV--SAGGYLKWWNVATGDSSQTFYTNGTNLK 1229
Score = 71.6 bits (174), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 65/283 (22%), Positives = 115/283 (40%), Gaps = 45/283 (15%)
Query: 71 GHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVP-----TATCLKTLI------------- 112
GH V ++FS D ++ASDD+TIR+W+ +A LK I
Sbjct: 887 GHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLA 946
Query: 113 --------------GHTNY-----VFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVL 153
G +Y V C +P + G D ++I ++ +
Sbjct: 947 VDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSG 1006
Query: 154 PAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGK 213
H V + F DG +++SS D + ++W+ TG + V + + +
Sbjct: 1007 VGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGD--YVFLQAHQETVKDFRLLQDSR 1064
Query: 214 FILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWE 273
+L + D T+++WN TG+I + +T H + +S S K+ S S D +W
Sbjct: 1065 -LLSWSFDGTVKVWNVITGRIERDFTCHQGT--VLSCAISSDATKF-SSTSADKTAKIWS 1120
Query: 274 LQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRTVKIW 316
+ +L+GH V A ++A+G D++ ++IW
Sbjct: 1121 FDLLSPLHELKGHNGCVRCSAFSLDGILLATG--DDNGEIRIW 1161
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 83/165 (50%), Gaps = 4/165 (2%)
Query: 152 VLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPN 211
V+ H+D V F++DG I + D +++ A TG + + E+ V FS +
Sbjct: 617 VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHED-EVLCCAFSSD 675
Query: 212 GKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYL 271
+I + D +++W+ +TGK++ TY H+ C T + +N + +GS D + L
Sbjct: 676 DSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFT-NKSNHLLLATGSNDFFLKL 734
Query: 272 WELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRTVKIW 316
W+L ++ + GHT+ V P + ++AS + D T+++W
Sbjct: 735 WDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADG--TLRLW 777
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/209 (21%), Positives = 91/209 (43%), Gaps = 6/209 (2%)
Query: 73 EQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVS 132
E VS S ++ +D I++ ++P + +GH V + F ++S
Sbjct: 968 EAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLIS 1027
Query: 133 GAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCM 192
+ D +++W+ +TG + L AH + V +D ++ + S+DG ++W+ TG
Sbjct: 1028 SSEDSVIQVWNWQTGDYV-FLQAHQETVKDFRLLQDSRLL-SWSFDGTVKVWNVITGRIE 1085
Query: 193 KTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTF 252
+ + +S S KF D T ++W++ L GH C S F
Sbjct: 1086 RDFTCHQGTVLSCAISSDATKFSSTSA-DKTAKIWSFDLLSPLHELKGHNGCVRC--SAF 1142
Query: 253 SVTNGKYIVSGSEDSCVYLWELQSRKVVQ 281
S+ +G + +G ++ + +W + +++
Sbjct: 1143 SL-DGILLATGDDNGEIRIWNVSDGQLLH 1170
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 114 bits (285), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 82/314 (26%), Positives = 146/314 (46%), Gaps = 29/314 (9%)
Query: 22 HLRAISSVKFSHDGRLLASSSADKXXXXXXXXXXXXXXXXXXXXLQKFTGHEQGVSDLVF 81
H A+ FS DG+ +AS ADK L HE V F
Sbjct: 614 HTDAVYHACFSQDGQRIASCGADK--------TLQVFKAETGEKLLDIKAHEDEVLCCAF 665
Query: 82 SSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSN--MIVSGAFDETV 139
SSD ++ + S DK +++WD T + T H+ V C +F +SN ++ +G+ D +
Sbjct: 666 SSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFL 725
Query: 140 RIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTL---- 195
++WD+ +C + H++ V F+ D ++ + S DG R+WD + + K++
Sbjct: 726 KLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKR 785
Query: 196 --IDDENPP------VSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNS-KY 246
+ E+PP V +S +G I+V + L +++G + + +TGH ++ +Y
Sbjct: 786 FFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQY 845
Query: 247 CISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGA 306
C FS + +++ S+ CV LW + SR V GH V V P + + +
Sbjct: 846 C---DFSPYDHLAVIALSQ-YCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTAS 901
Query: 307 LDNDRTVKIWTQEK 320
+D+T+++W +K
Sbjct: 902 --DDQTIRVWETKK 913
Score = 74.7 bits (182), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 64/234 (27%), Positives = 100/234 (42%), Gaps = 21/234 (8%)
Query: 21 GHLRAISSVKFSHDGRLLASSSADKXXXXXXXXXXXXXXXXXXXXLQKFTGHEQGVSDLV 80
GH +A+ ++F+ DG+ L SSS D H++ V D
Sbjct: 1001 GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF---------LQAHQETVKDFR 1051
Query: 81 FSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVR 140
DSR L+S S D T+++W+V T + H V + + S + D+T +
Sbjct: 1052 LLQDSR-LLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAK 1110
Query: 141 IWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGH----CMKTLI 196
IW L L H+ V F+ DG ++ T +G RIW+ S G C +
Sbjct: 1111 IWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISV 1170
Query: 197 DDENPP----VSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKT-YTGHTNSK 245
++ V+ V FSP+ K ++ + L+ WN +TG +T YT TN K
Sbjct: 1171 EEGTATHGGWVTDVCFSPDSKTLV--SAGGYLKWWNVATGDSSQTFYTNGTNLK 1222
Score = 71.2 bits (173), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 65/283 (22%), Positives = 115/283 (40%), Gaps = 45/283 (15%)
Query: 71 GHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVP-----TATCLKTLI------------- 112
GH V ++FS D ++ASDD+TIR+W+ +A LK I
Sbjct: 880 GHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLA 939
Query: 113 --------------GHTNY-----VFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVL 153
G +Y V C +P + G D ++I ++ +
Sbjct: 940 VDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSG 999
Query: 154 PAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGK 213
H V + F DG +++SS D + ++W+ TG + V + + +
Sbjct: 1000 VGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGD--YVFLQAHQETVKDFRLLQDSR 1057
Query: 214 FILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWE 273
+L + D T+++WN TG+I + +T H + +S S K+ S S D +W
Sbjct: 1058 -LLSWSFDGTVKVWNVITGRIERDFTCHQGT--VLSCAISSDATKF-SSTSADKTAKIWS 1113
Query: 274 LQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRTVKIW 316
+ +L+GH V A ++A+G D++ ++IW
Sbjct: 1114 FDLLSPLHELKGHNGCVRCSAFSLDGILLATG--DDNGEIRIW 1154
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 83/165 (50%), Gaps = 4/165 (2%)
Query: 152 VLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPN 211
V+ H+D V F++DG I + D +++ A TG + + E+ V FS +
Sbjct: 610 VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHED-EVLCCAFSSD 668
Query: 212 GKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYL 271
+I + D +++W+ +TGK++ TY H+ C T + +N + +GS D + L
Sbjct: 669 DSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFT-NKSNHLLLATGSNDFFLKL 727
Query: 272 WELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRTVKIW 316
W+L ++ + GHT+ V P + ++AS + D T+++W
Sbjct: 728 WDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADG--TLRLW 770
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/209 (21%), Positives = 91/209 (43%), Gaps = 6/209 (2%)
Query: 73 EQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVS 132
E VS S ++ +D I++ ++P + +GH V + F ++S
Sbjct: 961 EAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLIS 1020
Query: 133 GAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCM 192
+ D +++W+ +TG + L AH + V +D ++ + S+DG ++W+ TG
Sbjct: 1021 SSEDSVIQVWNWQTGDYV-FLQAHQETVKDFRLLQDSRLL-SWSFDGTVKVWNVITGRIE 1078
Query: 193 KTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTF 252
+ + +S S KF D T ++W++ L GH C S F
Sbjct: 1079 RDFTCHQGTVLSCAISSDATKFSSTSA-DKTAKIWSFDLLSPLHELKGHNGCVRC--SAF 1135
Query: 253 SVTNGKYIVSGSEDSCVYLWELQSRKVVQ 281
S+ +G + +G ++ + +W + +++
Sbjct: 1136 SL-DGILLATGDDNGEIRIWNVSDGQLLH 1163
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 108 bits (271), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 81/314 (25%), Positives = 147/314 (46%), Gaps = 29/314 (9%)
Query: 22 HLRAISSVKFSHDGRLLASSSADKXXXXXXXXXXXXXXXXXXXXLQKFTGHEQGVSDLVF 81
H A+ FS DG+ +AS ADK L + HE V F
Sbjct: 620 HTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEK--------LLEIKAHEDEVLCCAF 671
Query: 82 SSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSN--MIVSGAFDETV 139
S+D RF+ + S DK +++W+ T + T H+ V C +F S+ ++ +G+ D +
Sbjct: 672 STDDRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFL 731
Query: 140 RIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTL---- 195
++WD+ +C + H++ V F+ D ++ + S DG ++WDA++ + K++
Sbjct: 732 KLWDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANERKSINVKQ 791
Query: 196 --IDDENPP------VSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNS-KY 246
++ E+P V +S +G I+V + +++G + + +TGH ++ +Y
Sbjct: 792 FFLNLEDPQEDMEVIVKCCSWSADGARIMVAAKNKIFLFDIHTSGLLGEIHTGHHSTIQY 851
Query: 247 CISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGA 306
C FS N +V+ S+ CV LW SR V GH V V P + + +
Sbjct: 852 C---DFSPQNHLAVVALSQ-YCVELWNTDSRSKVADCRGHLSWVHGVMFSPDGSSFLTSS 907
Query: 307 LDNDRTVKIWTQEK 320
+D+T+++W +K
Sbjct: 908 --DDQTIRLWETKK 919
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 83/165 (50%), Gaps = 4/165 (2%)
Query: 152 VLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPN 211
V+ H+D V F+ DG I + D +++ A TG + + E+ V FS +
Sbjct: 616 VVRPHTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHED-EVLCCAFSTD 674
Query: 212 GKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYL 271
+FI ++D +++WN TG+++ TY H+ C T S ++ + +GS D + L
Sbjct: 675 DRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNS-SHHLLLATGSSDCFLKL 733
Query: 272 WELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRTVKIW 316
W+L ++ + GHT+ V P + ++AS + D T+K+W
Sbjct: 734 WDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADG--TLKLW 776
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 61/237 (25%), Positives = 103/237 (43%), Gaps = 20/237 (8%)
Query: 17 QTLNGHLRAISSVKFSHDGRLLASSSADKXXXXXXXXXXXXXXXXXXXXLQKFTGHEQGV 76
Q+ H + + ++F+ D + L SSS D GH++ V
Sbjct: 1003 QSRFQHKKTVWHIQFTADEKTLISSSDDAEIQVWNWQLDKCIF---------LRGHQETV 1053
Query: 77 SDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFD 136
D +SR L+S S D T+++W++ T K + H V + + + S + D
Sbjct: 1054 KDFRLLKNSR-LLSWSFDGTVKVWNIITGNKEKDFVCHQGTVLSCDISHDATKFSSTSAD 1112
Query: 137 ETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTL- 195
+T +IW L L H+ V F+ D T++ T +G RIW+ S G +
Sbjct: 1113 KTAKIWSFDLLLPLHELRGHNGCVRCSAFSVDSTLLATGDDNGEIRIWNVSNGELLHLCA 1172
Query: 196 -IDDENPP-----VSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKT-YTGHTNSK 245
+ +E V+ + FSP+GK ++ + ++ WN TG+ +T YT TN K
Sbjct: 1173 PLSEEGAATHGGWVTDLCFSPDGKMLI--SAGGYIKWWNVVTGESSQTFYTNGTNLK 1227
Score = 64.7 bits (156), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 75/312 (24%), Positives = 130/312 (41%), Gaps = 32/312 (10%)
Query: 18 TLNGHLRAISSVKFSHDGRLLASSSADKXXXXXXXXXXXXXXXXXXXXLQKFTGHEQGVS 77
T+ GH +++ +FS D +LLAS SAD Q F E
Sbjct: 744 TMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANERKSINVK--QFFLNLEDPQE 801
Query: 78 DL-------VFSSDSRFLVSASDDKTIRLWDVPTATCLKTL-IGHTNYVFCVNFNPQSNM 129
D+ +S+D ++ A+ +K I L+D+ T+ L + GH + + +F+PQ+++
Sbjct: 802 DMEVIVKCCSWSADGARIMVAAKNK-IFLFDIHTSGLLGEIHTGHHSTIQYCDFSPQNHL 860
Query: 130 IVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDA--- 186
V V +W+ + + H V V F+ DG+ +TSS D R+W+
Sbjct: 861 AVVALSQYCVELWNTDSRSKVADCRGHLSWVHGVMFSPDGSSFLTSSDDQTIRLWETKKV 920
Query: 187 --STGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNS 244
++ +K +D V F N +L L+L N TG+I T S
Sbjct: 921 CKNSAVMLKQEVD--------VVFQENEVMVLAVDHIRRLQLINGRTGQI-DYLTEAQVS 971
Query: 245 KYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIAS 304
C+S +YI G E+ + + EL + ++ Q H V + E + S
Sbjct: 972 CCCLSPHL-----QYIAFGDENGAIEILELVNNRIFQSRFQHKKTVWHIQFTADEKTLIS 1026
Query: 305 GALDNDRTVKIW 316
+ +D +++W
Sbjct: 1027 SS--DDAEIQVW 1036
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/247 (21%), Positives = 106/247 (42%), Gaps = 13/247 (5%)
Query: 70 TGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNM 129
TGH + FS + V A + LW+ + + + GH ++V V F+P +
Sbjct: 843 TGHHSTIQYCDFSPQNHLAVVALSQYCVELWNTDSRSKVADCRGHLSWVHGVMFSPDGSS 902
Query: 130 IVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTG 189
++ + D+T+R+W+ K K K V F + M++ + ++ + TG
Sbjct: 903 FLTSSDDQTIRLWETK--KVCKNSAVMLKQEVDVVFQENEVMVLAVDHIRRLQLINGRTG 960
Query: 190 HCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCIS 249
+ L + + VS SP+ ++I G + + + +I ++ H + + I
Sbjct: 961 Q-IDYLTEAQ---VSCCCLSPHLQYIAFGDENGAIEILELVNNRIFQSRFQHKKTVWHIQ 1016
Query: 250 STFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDN 309
T + K ++S S+D+ + +W Q K + L GH + V +++
Sbjct: 1017 FT---ADEKTLISSSDDAEIQVWNWQLDKCI-FLRGHQETVKDFRLLKNSRLLSWSF--- 1069
Query: 310 DRTVKIW 316
D TVK+W
Sbjct: 1070 DGTVKVW 1076
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 103 bits (258), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 71/236 (30%), Positives = 118/236 (50%), Gaps = 13/236 (5%)
Query: 67 QKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQ 126
+ GH VSD+V SSD +F +S S D T+RLWD+ T T + +GHT V V F+
Sbjct: 57 RALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSD 116
Query: 127 SNMIVSGAFDETVRIWDVKTGKCLKVL--PAHSDPVTAVDF--NRDGTMIVTSSYDGLCR 182
+ IVSG+ D+T+++W+ G C + +HS+ V+ V F N +IV+ +D L +
Sbjct: 117 NRQIVSGSRDKTIKLWNT-LGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVK 175
Query: 183 IWDASTGHC-MKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGH 241
+W+ + +C +KT ++ V SP+G G D LW+ + GK L T G
Sbjct: 176 VWNLA--NCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG 233
Query: 242 TNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHP 297
I + + +Y + + + +W+L+ + +V +L+ S A P
Sbjct: 234 D-----IINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPP 284
Score = 82.4 bits (202), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 67/268 (25%), Positives = 110/268 (41%), Gaps = 61/268 (22%)
Query: 17 QTLNGHLRAISSVKFSHDGRLLASSSADKXXXXXXXXXXXXXXXXXXXXLQKFTGHEQGV 76
+ L GH +S V S DG+ S S D ++F GH + V
Sbjct: 57 RALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTT--------RRFVGHTKDV 108
Query: 77 SDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLI--GHTNYVFCVNFNPQSN--MIVS 132
+ FSSD+R +VS S DKTI+LW+ C T+ H+ +V CV F+P S+ +IVS
Sbjct: 109 LSVAFSSDNRQIVSGSRDKTIKLWNT-LGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVS 167
Query: 133 GAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCM 192
+D+ V++W++ K H+ + V + DG++ + DG +WD + G +
Sbjct: 168 CGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHL 227
Query: 193 KTL------------------------------------IDD------------ENPPVS 204
TL +D+ E P +
Sbjct: 228 YTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCT 287
Query: 205 FVKFSPNGKFILVGTLDNTLRLWNYSTG 232
+ +S +G+ + G DN +R+W + G
Sbjct: 288 SLAWSADGQTLFAGYTDNLVRVWQVTIG 315
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 103 bits (258), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 71/236 (30%), Positives = 118/236 (50%), Gaps = 13/236 (5%)
Query: 67 QKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQ 126
+ GH VSD+V SSD +F +S S D T+RLWD+ T T + +GHT V V F+
Sbjct: 80 RALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSD 139
Query: 127 SNMIVSGAFDETVRIWDVKTGKCLKVL--PAHSDPVTAVDF--NRDGTMIVTSSYDGLCR 182
+ IVSG+ D+T+++W+ G C + +HS+ V+ V F N +IV+ +D L +
Sbjct: 140 NRQIVSGSRDKTIKLWNT-LGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVK 198
Query: 183 IWDASTGHC-MKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGH 241
+W+ + +C +KT ++ V SP+G G D LW+ + GK L T G
Sbjct: 199 VWNLA--NCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG 256
Query: 242 TNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHP 297
I + + +Y + + + +W+L+ + +V +L+ S A P
Sbjct: 257 D-----IINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPP 307
Score = 82.4 bits (202), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 67/268 (25%), Positives = 110/268 (41%), Gaps = 61/268 (22%)
Query: 17 QTLNGHLRAISSVKFSHDGRLLASSSADKXXXXXXXXXXXXXXXXXXXXLQKFTGHEQGV 76
+ L GH +S V S DG+ S S D ++F GH + V
Sbjct: 80 RALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTT--------RRFVGHTKDV 131
Query: 77 SDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLI--GHTNYVFCVNFNPQSN--MIVS 132
+ FSSD+R +VS S DKTI+LW+ C T+ H+ +V CV F+P S+ +IVS
Sbjct: 132 LSVAFSSDNRQIVSGSRDKTIKLWNT-LGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVS 190
Query: 133 GAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCM 192
+D+ V++W++ K H+ + V + DG++ + DG +WD + G +
Sbjct: 191 CGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHL 250
Query: 193 KTL------------------------------------IDD------------ENPPVS 204
TL +D+ E P +
Sbjct: 251 YTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCT 310
Query: 205 FVKFSPNGKFILVGTLDNTLRLWNYSTG 232
+ +S +G+ + G DN +R+W + G
Sbjct: 311 SLAWSADGQTLFAGYTDNLVRVWQVTIG 338
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 103 bits (257), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 66/225 (29%), Positives = 115/225 (51%), Gaps = 15/225 (6%)
Query: 67 QKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQ 126
++ TGH V D+V SSD +F +S S D +RLWD+ + +GHT V V F+
Sbjct: 424 RRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLD 483
Query: 127 SNMIVSGAFDETVRIWDVKTGKCLKVL----PAHSDPVTAVDF--NRDGTMIVTSSYDGL 180
+ IVS + D T+++W+ G+C + H D V+ V F N IV++S+D
Sbjct: 484 NRQIVSASRDRTIKLWNT-LGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKT 542
Query: 181 CRIWDASTGHC-MKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYT 239
++W+ S +C +++ + VS V SP+G G D + LW+ + GK K Y+
Sbjct: 543 VKVWNLS--NCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGK--KLYS 598
Query: 240 GHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLE 284
NS + + +Y + + + + +W+L+S+ +V+ L+
Sbjct: 599 LEANS---VIHALCFSPNRYWLCAATEHGIKIWDLESKSIVEDLK 640
Score = 102 bits (253), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 77/286 (26%), Positives = 134/286 (46%), Gaps = 37/286 (12%)
Query: 11 RPYTLTQT-LNGHLRAISSVKFSHDGRLLASSSADKXXXXXXXXXXXXXXXXXXXXLQKF 69
+ Y + Q L GH + V S DG+ S S D ++F
Sbjct: 417 KAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVST--------RRF 468
Query: 70 TGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLI----GHTNYVFCVNFNP 125
GH + V + FS D+R +VSAS D+TI+LW+ C T+ GH ++V CV F+P
Sbjct: 469 VGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNT-LGECKYTISEGGEGHRDWVSCVRFSP 527
Query: 126 QS--NMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRI 183
+ IVS ++D+TV++W++ K L H+ V+ V + DG++ + DG+ +
Sbjct: 528 NTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLL 587
Query: 184 WDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTY----- 238
WD + G + +L + N + + FSPN ++ L ++ +++W+ + I++
Sbjct: 588 WDLAEGKKLYSL--EANSVIHALCFSPN-RYWLCAATEHGIKIWDLESKSIVEDLKVDLK 644
Query: 239 --------TGHTNSK----YCISSTFSVTNGKYIVSGSEDSCVYLW 272
+G +K YC S +S +G + SG D + +W
Sbjct: 645 AEAEKADNSGPAATKRKVIYCTSLNWS-ADGSTLFSGYTDGVIRVW 689
Score = 97.1 bits (240), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 65/214 (30%), Positives = 107/214 (50%), Gaps = 14/214 (6%)
Query: 84 DSRFLVSASDDKTIRLW-----DVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDET 138
++ +VSAS DK+I LW D + L GH+++V V + +SG++D
Sbjct: 394 NADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGE 453
Query: 139 VRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLI-- 196
+R+WD+ G + H+ V +V F+ D IV++S D ++W+ + G C T+
Sbjct: 454 LRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWN-TLGECKYTISEG 512
Query: 197 -DDENPPVSFVKFSPN--GKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFS 253
+ VS V+FSPN I+ + D T+++WN S K+ T GHT +S+
Sbjct: 513 GEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTG---YVSTVAV 569
Query: 254 VTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHT 287
+G SG +D V LW+L K + LE ++
Sbjct: 570 SPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANS 603
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 66/218 (30%), Positives = 105/218 (48%), Gaps = 17/218 (7%)
Query: 110 TLIGHTNYVFCVNFNPQSN--MIVSGAFDETVRIW-----DVKTGKCLKVLPAHSDPVTA 162
T+ HT+ V + P N +IVS + D+++ +W D G + L HS V
Sbjct: 377 TMRAHTDMVTAIA-TPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVED 435
Query: 163 VDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDN 222
V + DG ++ S+DG R+WD + G + + +S V FS + + I+ + D
Sbjct: 436 VVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLS-VAFSLDNRQIVSASRDR 494
Query: 223 TLRLWNYSTGKILKTYT----GHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRK 278
T++LWN + G+ T + GH + C+ + + T IVS S D V +W L + K
Sbjct: 495 TIKLWN-TLGECKYTISEGGEGHRDWVSCVRFSPN-TLQPTIVSASWDKTVKVWNLSNCK 552
Query: 279 VVQKLEGHTDPVISVASHPTENIIASGALDNDRTVKIW 316
+ L GHT V +VA P ++ ASG D V +W
Sbjct: 553 LRSTLAGHTGYVSTVAVSPDGSLCASGG--KDGVVLLW 588
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 101 bits (251), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 95/182 (52%), Gaps = 8/182 (4%)
Query: 66 LQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNP 125
++ F GH V D ++D + +SAS DKT+RLWDV T + +GH + V V+ +
Sbjct: 58 VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDK 117
Query: 126 QSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDF------NRDGTMIVTSSYDG 179
+++MI+SG+ D+T+++W +K G+CL L H+D V+ V + D I+++ D
Sbjct: 118 KASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDK 176
Query: 180 LCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYT 239
+ + W+ + I N ++ + SP+G I D + LWN + K + T +
Sbjct: 177 MVKAWNLNQFQIEADFI-GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLS 235
Query: 240 GH 241
Sbjct: 236 AQ 237
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 97/219 (44%), Gaps = 19/219 (8%)
Query: 110 TLIGHTNYVFCVNFNP-QSNMIVSGAFDETVRIW-----DVKTGKCLKVLPAHSDPVTAV 163
TL GH +V + + Q N+++S + D+T+ W D K G ++ HS V
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 164 DFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNT 223
DG +++S+D R+WD +TG + + ++ +S V I+ G+ D T
Sbjct: 72 TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMS-VDIDKKASMIISGSRDKT 130
Query: 224 LRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKY------IVSGSEDSCVYLWELQSR 277
+++W G+ L T GH + +S V N K I+S D V W L
Sbjct: 131 IKVWTIK-GQCLATLLGHND---WVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQF 186
Query: 278 KVVQKLEGHTDPVISVASHPTENIIASGALDNDRTVKIW 316
++ GH + ++ + P +IAS D + + +W
Sbjct: 187 QIEADFIGHNSNINTLTASPDGTLIASAGKDGE--IMLW 223
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/233 (20%), Positives = 90/233 (38%), Gaps = 32/233 (13%)
Query: 17 QTLNGHLRAISSVKFSHDGRLLASSSADKXXXXXXXXXXXXXXXXXXXXLQKFTGHEQGV 76
Q GH + SV ++ S S DK L GH V
Sbjct: 101 QRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQC---------LATLLGHNDWV 151
Query: 77 SDLVF------SSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMI 130
S + DS ++SA +DK ++ W++ IGH + + + +P +I
Sbjct: 152 SQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLI 211
Query: 131 VSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGH 190
S D + +W++ K + L A D V ++ F+ + + ++ G+ +++ +
Sbjct: 212 ASAGKDGEIMLWNLAAKKAMYTLSAQ-DEVFSLAFSPNRYWLAAATATGI-KVFSLDPQY 269
Query: 191 CMKTLIDDENPPVS-----------FVKFSPNGKFILVGTLDNTLRLWNYSTG 232
L+DD P + + +S +G+ + G DN +R+W T
Sbjct: 270 ----LVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 12/113 (10%)
Query: 210 PNGKFILVGTLDNTLRLWNYST-----GKILKTYTGHTNSKYCISSTFSVTNGKYIVSGS 264
PN +L + D TL W + G ++++ GH+ + + +G Y +S S
Sbjct: 30 PN--LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHS---HIVQDCTLTADGAYALSAS 84
Query: 265 EDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRTVKIWT 317
D + LW++ + + Q+ GH V+SV ++I SG+ D+T+K+WT
Sbjct: 85 WDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGS--RDKTIKVWT 135
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 101 bits (251), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 68/265 (25%), Positives = 127/265 (47%), Gaps = 23/265 (8%)
Query: 66 LQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNP 125
++ F GH V D ++D + +SAS DKT+RLWDV T + +GH + V V+ +
Sbjct: 58 VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDK 117
Query: 126 QSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDF------NRDGTMIVTSSYDG 179
+++MI+SG+ D+T+++W +K G+CL L H+D V+ V + D I+++ D
Sbjct: 118 KASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDK 176
Query: 180 LCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYT 239
+ + W+ + I N ++ + SP+G I D + LWN + K + T +
Sbjct: 177 MVKAWNLNQFQIEADFI-GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLS 235
Query: 240 GHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLE-------GHTDP-VI 291
S FS +Y ++ + + + ++ L + +V L +P +
Sbjct: 236 AQDE---VFSLAFSPN--RYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSAAAEPHAV 290
Query: 292 SVASHPTENIIASGALDNDRTVKIW 316
S+A + +G DN +++W
Sbjct: 291 SLAWSADGQTLFAGYTDN--VIRVW 313
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 97/219 (44%), Gaps = 19/219 (8%)
Query: 110 TLIGHTNYVFCVNFNP-QSNMIVSGAFDETVRIW-----DVKTGKCLKVLPAHSDPVTAV 163
TL GH +V + + Q N+++S + D+T+ W D K G ++ HS V
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 164 DFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNT 223
DG +++S+D R+WD +TG + + ++ +S V I+ G+ D T
Sbjct: 72 TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMS-VDIDKKASMIISGSRDKT 130
Query: 224 LRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKY------IVSGSEDSCVYLWELQSR 277
+++W G+ L T GH + +S V N K I+S D V W L
Sbjct: 131 IKVWTIK-GQCLATLLGHND---WVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQF 186
Query: 278 KVVQKLEGHTDPVISVASHPTENIIASGALDNDRTVKIW 316
++ GH + ++ + P +IAS D + + +W
Sbjct: 187 QIEADFIGHNSNINTLTASPDGTLIASAGKDGE--IMLW 223
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/233 (20%), Positives = 90/233 (38%), Gaps = 32/233 (13%)
Query: 17 QTLNGHLRAISSVKFSHDGRLLASSSADKXXXXXXXXXXXXXXXXXXXXLQKFTGHEQGV 76
Q GH + SV ++ S S DK L GH V
Sbjct: 101 QRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQC---------LATLLGHNDWV 151
Query: 77 SDLVF------SSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMI 130
S + DS ++SA +DK ++ W++ IGH + + + +P +I
Sbjct: 152 SQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLI 211
Query: 131 VSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGH 190
S D + +W++ K + L A D V ++ F+ + + ++ G+ +++ +
Sbjct: 212 ASAGKDGEIMLWNLAAKKAMYTLSAQ-DEVFSLAFSPNRYWLAAATATGI-KVFSLDPQY 269
Query: 191 CMKTLIDDENPPVS-----------FVKFSPNGKFILVGTLDNTLRLWNYSTG 232
L+DD P + + +S +G+ + G DN +R+W T
Sbjct: 270 ----LVDDLRPEFAGYSAAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 12/113 (10%)
Query: 210 PNGKFILVGTLDNTLRLWNYST-----GKILKTYTGHTNSKYCISSTFSVTNGKYIVSGS 264
PN +L + D TL W + G ++++ GH+ + + +G Y +S S
Sbjct: 30 PN--LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHS---HIVQDCTLTADGAYALSAS 84
Query: 265 EDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRTVKIWT 317
D + LW++ + + Q+ GH V+SV ++I SG+ D+T+K+WT
Sbjct: 85 WDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGS--RDKTIKVWT 135
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 101 bits (251), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 95/182 (52%), Gaps = 8/182 (4%)
Query: 66 LQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNP 125
++ F GH V D ++D + +SAS DKT+RLWDV T + +GH + V V+ +
Sbjct: 58 VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDK 117
Query: 126 QSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDF------NRDGTMIVTSSYDG 179
+++MI+SG+ D+T+++W +K G+CL L H+D V+ V + D I+++ D
Sbjct: 118 KASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDK 176
Query: 180 LCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYT 239
+ + W+ + I N ++ + SP+G I D + LWN + K + T +
Sbjct: 177 MVKAWNLNQFQIEADFI-GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLS 235
Query: 240 GH 241
Sbjct: 236 AQ 237
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 97/219 (44%), Gaps = 19/219 (8%)
Query: 110 TLIGHTNYVFCVNFNP-QSNMIVSGAFDETVRIW-----DVKTGKCLKVLPAHSDPVTAV 163
TL GH +V + + Q N+++S + D+T+ W D K G ++ HS V
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 164 DFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNT 223
DG +++S+D R+WD +TG + + ++ +S V I+ G+ D T
Sbjct: 72 TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMS-VDIDKKASMIISGSRDKT 130
Query: 224 LRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKY------IVSGSEDSCVYLWELQSR 277
+++W G+ L T GH + +S V N K I+S D V W L
Sbjct: 131 IKVWTIK-GQCLATLLGHND---WVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQF 186
Query: 278 KVVQKLEGHTDPVISVASHPTENIIASGALDNDRTVKIW 316
++ GH + ++ + P +IAS D + + +W
Sbjct: 187 QIEADFIGHNSNINTLTASPDGTLIASAGKDGE--IMLW 223
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/233 (20%), Positives = 90/233 (38%), Gaps = 32/233 (13%)
Query: 17 QTLNGHLRAISSVKFSHDGRLLASSSADKXXXXXXXXXXXXXXXXXXXXLQKFTGHEQGV 76
Q GH + SV ++ S S DK L GH V
Sbjct: 101 QRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQC---------LATLLGHNDWV 151
Query: 77 SDLVF------SSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMI 130
S + DS ++SA +DK ++ W++ IGH + + + +P +I
Sbjct: 152 SQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLI 211
Query: 131 VSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGH 190
S D + +W++ K + L A D V ++ F+ + + ++ G+ +++ +
Sbjct: 212 ASAGKDGEIMLWNLAAKKAMYTLSAQ-DEVFSLAFSPNRYWLAAATATGI-KVFSLDPQY 269
Query: 191 CMKTLIDDENPPVS-----------FVKFSPNGKFILVGTLDNTLRLWNYSTG 232
L+DD P + + +S +G+ + G DN +R+W T
Sbjct: 270 ----LVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 12/113 (10%)
Query: 210 PNGKFILVGTLDNTLRLWNYST-----GKILKTYTGHTNSKYCISSTFSVTNGKYIVSGS 264
PN +L + D TL W + G ++++ GH+ + + +G Y +S S
Sbjct: 30 PN--LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHS---HIVQDCTLTADGAYALSAS 84
Query: 265 EDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRTVKIWT 317
D + LW++ + + Q+ GH V+SV ++I SG+ D+T+K+WT
Sbjct: 85 WDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGS--RDKTIKVWT 135
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 101 bits (251), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 95/182 (52%), Gaps = 8/182 (4%)
Query: 66 LQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNP 125
++ F GH V D ++D + +SAS DKT+RLWDV T + +GH + V V+ +
Sbjct: 58 VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDK 117
Query: 126 QSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDF------NRDGTMIVTSSYDG 179
+++MI+SG+ D+T+++W +K G+CL L H+D V+ V + D I+++ D
Sbjct: 118 KASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDK 176
Query: 180 LCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYT 239
+ + W+ + I N ++ + SP+G I D + LWN + K + T +
Sbjct: 177 MVKAWNLNQFQIEADFI-GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLS 235
Query: 240 GH 241
Sbjct: 236 AQ 237
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 97/219 (44%), Gaps = 19/219 (8%)
Query: 110 TLIGHTNYVFCVNFNP-QSNMIVSGAFDETVRIW-----DVKTGKCLKVLPAHSDPVTAV 163
TL GH +V + + Q N+++S + D+T+ W D K G ++ HS V
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 164 DFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNT 223
DG +++S+D R+WD +TG + + ++ +S V I+ G+ D T
Sbjct: 72 TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMS-VDIDKKASMIISGSRDKT 130
Query: 224 LRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKY------IVSGSEDSCVYLWELQSR 277
+++W G+ L T GH + +S V N K I+S D V W L
Sbjct: 131 IKVWTIK-GQCLATLLGHND---WVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQF 186
Query: 278 KVVQKLEGHTDPVISVASHPTENIIASGALDNDRTVKIW 316
++ GH + ++ + P +IAS D + + +W
Sbjct: 187 QIEADFIGHNSNINTLTASPDGTLIASAGKDGE--IMLW 223
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/229 (20%), Positives = 89/229 (38%), Gaps = 32/229 (13%)
Query: 17 QTLNGHLRAISSVKFSHDGRLLASSSADKXXXXXXXXXXXXXXXXXXXXLQKFTGHEQGV 76
Q GH + SV ++ S S DK L GH V
Sbjct: 101 QRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQC---------LATLLGHNDWV 151
Query: 77 SDLVF------SSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMI 130
S + DS ++SA +DK ++ W++ IGH + + + +P +I
Sbjct: 152 SQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLI 211
Query: 131 VSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGH 190
S D + +W++ K + L A D V ++ F+ + + ++ G+ +++ +
Sbjct: 212 ASAGKDGEIMLWNLAAKKAMYTLSAQ-DEVFSLAFSPNRYWLAAATATGI-KVFSLDPQY 269
Query: 191 CMKTLIDDENPPVS-----------FVKFSPNGKFILVGTLDNTLRLWN 228
L+DD P + + +S +G+ + G DN +R+W
Sbjct: 270 ----LVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQ 314
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 12/113 (10%)
Query: 210 PNGKFILVGTLDNTLRLWNYST-----GKILKTYTGHTNSKYCISSTFSVTNGKYIVSGS 264
PN +L + D TL W + G ++++ GH+ + + +G Y +S S
Sbjct: 30 PN--LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHS---HIVQDCTLTADGAYALSAS 84
Query: 265 EDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRTVKIWT 317
D + LW++ + + Q+ GH V+SV ++I SG+ D+T+K+WT
Sbjct: 85 WDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGS--RDKTIKVWT 135
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 100 bits (250), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 95/182 (52%), Gaps = 8/182 (4%)
Query: 66 LQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNP 125
++ F GH V D ++D + +SAS DKT+RLWDV T + +GH + V V+ +
Sbjct: 52 VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDK 111
Query: 126 QSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDF------NRDGTMIVTSSYDG 179
+++MI+SG+ D+T+++W +K G+CL L H+D V+ V + D I+++ D
Sbjct: 112 KASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDK 170
Query: 180 LCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYT 239
+ + W+ + I N ++ + SP+G I D + LWN + K + T +
Sbjct: 171 MVKAWNLNQFQIEADFI-GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLS 229
Query: 240 GH 241
Sbjct: 230 AQ 231
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 97/219 (44%), Gaps = 19/219 (8%)
Query: 110 TLIGHTNYVFCVNFNP-QSNMIVSGAFDETVRIW-----DVKTGKCLKVLPAHSDPVTAV 163
TL GH +V + + Q N+++S + D+T+ W D K G ++ HS V
Sbjct: 6 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 65
Query: 164 DFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNT 223
DG +++S+D R+WD +TG + + ++ +S V I+ G+ D T
Sbjct: 66 TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMS-VDIDKKASMIISGSRDKT 124
Query: 224 LRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKY------IVSGSEDSCVYLWELQSR 277
+++W G+ L T GH + +S V N K I+S D V W L
Sbjct: 125 IKVWTIK-GQCLATLLGHND---WVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQF 180
Query: 278 KVVQKLEGHTDPVISVASHPTENIIASGALDNDRTVKIW 316
++ GH + ++ + P +IAS D + + +W
Sbjct: 181 QIEADFIGHNSNINTLTASPDGTLIASAGKDGE--IMLW 217
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/233 (20%), Positives = 90/233 (38%), Gaps = 32/233 (13%)
Query: 17 QTLNGHLRAISSVKFSHDGRLLASSSADKXXXXXXXXXXXXXXXXXXXXLQKFTGHEQGV 76
Q GH + SV ++ S S DK L GH V
Sbjct: 95 QRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQC---------LATLLGHNDWV 145
Query: 77 SDLVF------SSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMI 130
S + DS ++SA +DK ++ W++ IGH + + + +P +I
Sbjct: 146 SQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLI 205
Query: 131 VSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGH 190
S D + +W++ K + L A D V ++ F+ + + ++ G+ +++ +
Sbjct: 206 ASAGKDGEIMLWNLAAKKAMYTLSAQ-DEVFSLAFSPNRYWLAAATATGI-KVFSLDPQY 263
Query: 191 CMKTLIDDENPPVS-----------FVKFSPNGKFILVGTLDNTLRLWNYSTG 232
L+DD P + + +S +G+ + G DN +R+W T
Sbjct: 264 ----LVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 312
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 12/113 (10%)
Query: 210 PNGKFILVGTLDNTLRLWNYST-----GKILKTYTGHTNSKYCISSTFSVTNGKYIVSGS 264
PN +L + D TL W + G ++++ GH+ + + +G Y +S S
Sbjct: 24 PN--LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHS---HIVQDCTLTADGAYALSAS 78
Query: 265 EDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRTVKIWT 317
D + LW++ + + Q+ GH V+SV ++I SG+ D+T+K+WT
Sbjct: 79 WDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGS--RDKTIKVWT 129
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 95.1 bits (235), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 66/229 (28%), Positives = 108/229 (47%), Gaps = 26/229 (11%)
Query: 84 DSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWD 143
+ ++++ +DDK IR++D L L GH V+ + + ++VSG+ D TVR+WD
Sbjct: 131 EDNYVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKY-AHGGILVSGSTDRTVRVWD 189
Query: 144 VKTGKCLKVLPAHSDPVTAVDF--NRDGTMIVTSSYDGLCRIW---------DASTGHCM 192
+K G C V H+ V +D ++ IVT S D +W D H
Sbjct: 190 IKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDY 249
Query: 193 KTLID--DENP---------PVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGH 241
+ +ENP S S +G ++ G+ DNTL +W+ + K L +GH
Sbjct: 250 PLVFHTPEENPYFVGVLRGHXASVRTVSGHGNIVVSGSYDNTLIVWDVAQXKCLYILSGH 309
Query: 242 TNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPV 290
T+ Y ST K +S S D+ + +W+L++ ++ L+GHT V
Sbjct: 310 TDRIY---STIYDHERKRCISASXDTTIRIWDLENGELXYTLQGHTALV 355
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 74/288 (25%), Positives = 128/288 (44%), Gaps = 44/288 (15%)
Query: 19 LNGHLRAISSVKFSHDGRLLASSSADKXXXXXXXXXXXXXXXXXXXXLQKFTGHEQGVS- 77
L+GH + ++K++H G +L S S D+ F GH V
Sbjct: 158 LSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCT--------HVFEGHNSTVRC 208
Query: 78 -DLVFSSDSRFLVSASDDKTIRLWDVPTATCLK-----------------------TLIG 113
D+V + +++V+ S D T+ +W +P + + L G
Sbjct: 209 LDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRG 268
Query: 114 HTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIV 173
H V V+ N++VSG++D T+ +WDV KCL +L H+D + + ++ + +
Sbjct: 269 HXASVRTVS--GHGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCI 326
Query: 174 TSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGK 233
++S D RIWD G TL V ++ S KF++ D ++R W+ +
Sbjct: 327 SASXDTTIRIWDLENGELXYTL-QGHTALVGLLRLSD--KFLVSAAADGSIRGWDANDYS 383
Query: 234 ILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQ 281
+Y HTN +TF V++ +VSGSE+ ++ L+S K+V
Sbjct: 384 RKFSYH-HTN--LSAITTFYVSD-NILVSGSENQ-FNIYNLRSGKLVH 426
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 95.1 bits (235), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 66/229 (28%), Positives = 109/229 (47%), Gaps = 26/229 (11%)
Query: 84 DSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWD 143
+ ++++ +DDK IR++D L L GH V+ + + ++VSG+ D TVR+WD
Sbjct: 131 EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKY-AHGGILVSGSTDRTVRVWD 189
Query: 144 VKTGKCLKVLPAHSDPVTAVDF--NRDGTMIVTSSYDGLCRIW---------DASTGHCM 192
+K G C V H+ V +D ++ IVT S D +W D H
Sbjct: 190 IKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDY 249
Query: 193 KTLID--DENP---------PVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGH 241
+ +ENP S S +G ++ G+ DNTL +W+ + K L +GH
Sbjct: 250 PLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGH 309
Query: 242 TNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPV 290
T+ Y ST K +S S D+ + +W+L++ +++ L+GHT V
Sbjct: 310 TDRIY---STIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALV 355
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 75/288 (26%), Positives = 129/288 (44%), Gaps = 44/288 (15%)
Query: 19 LNGHLRAISSVKFSHDGRLLASSSADKXXXXXXXXXXXXXXXXXXXXLQKFTGHEQGVS- 77
L+GH + ++K++H G +L S S D+ F GH V
Sbjct: 158 LSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCT--------HVFEGHNSTVRC 208
Query: 78 -DLVFSSDSRFLVSASDDKTIRLWDVPTATCLK-----------------------TLIG 113
D+V + +++V+ S D T+ +W +P + + L G
Sbjct: 209 LDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRG 268
Query: 114 HTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIV 173
H V V+ N++VSG++D T+ +WDV KCL +L H+D + + ++ + +
Sbjct: 269 HMASVRTVS--GHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCI 326
Query: 174 TSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGK 233
++S D RIWD G M TL V ++ S KF++ D ++R W+ +
Sbjct: 327 SASMDTTIRIWDLENGELMYTL-QGHTALVGLLRLSD--KFLVSAAADGSIRGWDANDYS 383
Query: 234 ILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQ 281
+Y HTN +TF V++ +VSGSE+ ++ L+S K+V
Sbjct: 384 RKFSYH-HTNLSAI--TTFYVSD-NILVSGSENQ-FNIYNLRSGKLVH 426
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 95.1 bits (235), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 92/182 (50%), Gaps = 8/182 (4%)
Query: 66 LQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNP 125
++ F GH V D ++D + +SAS DKT+RLWDV T + +GH + V V+ +
Sbjct: 58 VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDK 117
Query: 126 QSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDF------NRDGTMIVTSSYDG 179
+++ I+SG+ D+T+++W +K G+CL L H+D V+ V + D I+++ D
Sbjct: 118 KASXIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDK 176
Query: 180 LCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYT 239
+ W+ + I N ++ + SP+G I D + LWN + K T +
Sbjct: 177 XVKAWNLNQFQIEADFI-GHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTLS 235
Query: 240 GH 241
Sbjct: 236 AQ 237
Score = 71.6 bits (174), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 96/219 (43%), Gaps = 19/219 (8%)
Query: 110 TLIGHTNYVFCVNFNP-QSNMIVSGAFDETVRIW-----DVKTGKCLKVLPAHSDPVTAV 163
TL GH +V + + Q N+++S + D+T+ W D K G ++ HS V
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 164 DFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNT 223
DG +++S+D R+WD +TG + + ++ V V I+ G+ D T
Sbjct: 72 TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSD-VXSVDIDKKASXIISGSRDKT 130
Query: 224 LRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKY------IVSGSEDSCVYLWELQSR 277
+++W G+ L T GH + +S V N K I+S D V W L
Sbjct: 131 IKVWTIK-GQCLATLLGHND---WVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQF 186
Query: 278 KVVQKLEGHTDPVISVASHPTENIIASGALDNDRTVKIW 316
++ GH + ++ + P +IAS D + + +W
Sbjct: 187 QIEADFIGHNSNINTLTASPDGTLIASAGKDGE--IXLW 223
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/160 (21%), Positives = 71/160 (44%), Gaps = 17/160 (10%)
Query: 84 DSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWD 143
DS ++SA +DK ++ W++ IGH + + + +P +I S D + +W+
Sbjct: 165 DSVTIISAGNDKXVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWN 224
Query: 144 VKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPV 203
+ K L A D V ++ F+ + + ++ G+ +++ + L+DD P
Sbjct: 225 LAAKKAXYTLSAQ-DEVFSLAFSPNRYWLAAATATGI-KVFSLDPQY----LVDDLRPEF 278
Query: 204 S-----------FVKFSPNGKFILVGTLDNTLRLWNYSTG 232
+ + +S +G+ + G DN +R+W T
Sbjct: 279 AGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVXTA 318
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 54/113 (47%), Gaps = 12/113 (10%)
Query: 210 PNGKFILVGTLDNTLRLWNYST-----GKILKTYTGHTNSKYCISSTFSVTNGKYIVSGS 264
PN +L + D TL W + G ++++ GH+ + + +G Y +S S
Sbjct: 30 PN--LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHS---HIVQDCTLTADGAYALSAS 84
Query: 265 EDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRTVKIWT 317
D + LW++ + + Q+ GH V SV + I SG+ D+T+K+WT
Sbjct: 85 WDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGS--RDKTIKVWT 135
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 94.0 bits (232), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 64/208 (30%), Positives = 99/208 (47%), Gaps = 7/208 (3%)
Query: 69 FTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCL-KTLIGHTNYVFCVNFNPQ- 126
F H + + +++S SDD T++LW+ L +T GH ++V CV FNP+
Sbjct: 93 FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKD 152
Query: 127 SNMIVSGAFDETVRIWDV-KTGKCLKVLPAHSDPVTAVDFNR--DGTMIVTSSYDGLCRI 183
+ SG D TV++W + ++ + V VD+ D ++T+S D +I
Sbjct: 153 PSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKI 212
Query: 184 WDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTN 243
WD T C+ TL + VSF F P I+ G+ D TL++WN ST K+ KT
Sbjct: 213 WDYQTKSCVATL-EGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLE 271
Query: 244 SKYCISSTFSVTNGKYIVSGSEDSCVYL 271
+CI +T YI SG ++ L
Sbjct: 272 RSWCI-ATHPTGRKNYIASGFDNGFTVL 298
Score = 82.4 bits (202), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 63/241 (26%), Positives = 116/241 (48%), Gaps = 14/241 (5%)
Query: 81 FSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVR 140
F + +++ SDD IR+++ T + H +Y+ + +P ++SG+ D TV+
Sbjct: 63 FIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVK 122
Query: 141 IWDVKTGKCL-KVLPAHSDPVTAVDFN-RDGTMIVTSSYDGLCRIWDASTGHCMKTLIDD 198
+W+ + L + H V V FN +D + + D ++W TL
Sbjct: 123 LWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTG 182
Query: 199 ENPPVSFVKFSP--NGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTN 256
+ V++V + P + +++ + D T+++W+Y T + T GH ++ +F+V +
Sbjct: 183 QERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSN-----VSFAVFH 237
Query: 257 G--KYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPT--ENIIASGALDNDRT 312
I+SGSED + +W + KV + L + +A+HPT +N IASG DN T
Sbjct: 238 PTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASG-FDNGFT 296
Query: 313 V 313
V
Sbjct: 297 V 297
Score = 79.0 bits (193), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 57/253 (22%), Positives = 115/253 (45%), Gaps = 7/253 (2%)
Query: 67 QKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQ 126
+ F+ V + F ++++ + LW+ T ++++ V F +
Sbjct: 7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIAR 66
Query: 127 SNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDA 186
N I+ G+ D +R+++ TG+ + AH D + ++ + +++ S D ++W+
Sbjct: 67 KNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNW 126
Query: 187 STGHCMKTLIDDENPPVSFVKFSPNGKFILV-GTLDNTLRLWNYSTGKILKTYTGHTNSK 245
++ + V V F+P G LD T+++W S G+ +T T +
Sbjct: 127 ENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVW--SLGQSTPNFTLTTGQE 184
Query: 246 YCISST--FSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIA 303
++ + + + Y+++ S+D + +W+ Q++ V LEGH V HPT II
Sbjct: 185 RGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIII 244
Query: 304 SGALDNDRTVKIW 316
SG+ D T+KIW
Sbjct: 245 SGS--EDGTLKIW 255
Score = 68.2 bits (165), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 68/144 (47%), Gaps = 10/144 (6%)
Query: 13 YTLTQTLNGHLRAISSVKFS-HDGRLLASSSADKXXXXXXXXXXXXXXXXXXXXLQKFTG 71
+ L QT GH + V F+ D AS D+ TG
Sbjct: 130 WALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT-------TG 182
Query: 72 HEQGVS--DLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNM 129
E+GV+ D D ++++ASDD TI++WD T +C+ TL GH + V F+P +
Sbjct: 183 QERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPI 242
Query: 130 IVSGAFDETVRIWDVKTGKCLKVL 153
I+SG+ D T++IW+ T K K L
Sbjct: 243 IISGSEDGTLKIWNSSTYKVEKTL 266
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 68/133 (51%), Gaps = 4/133 (3%)
Query: 67 QKFTGHEQGVSDLVFS-SDSRFLVSASDDKTIRLWDVPTATCLKTLI-GHTNYVFCVNFN 124
Q F GHE V + F+ D S D+T+++W + +T TL G V V++
Sbjct: 134 QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYY 193
Query: 125 PQSN--MIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCR 182
P + +++ + D T++IWD +T C+ L H V+ F+ +I++ S DG +
Sbjct: 194 PLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLK 253
Query: 183 IWDASTGHCMKTL 195
IW++ST KTL
Sbjct: 254 IWNSSTYKVEKTL 266
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 57/117 (48%), Gaps = 5/117 (4%)
Query: 203 VSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVS 262
V + F P ++L + LWNY T +++ ++ + + + +I+
Sbjct: 16 VKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQV---TETPVRAGKFIARKNWIIV 72
Query: 263 GSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRTVKIWTQE 319
GS+D + ++ + + V E H D + S+A HPT+ + SG+ +D TVK+W E
Sbjct: 73 GSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGS--DDLTVKLWNWE 127
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 94.0 bits (232), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 64/208 (30%), Positives = 99/208 (47%), Gaps = 7/208 (3%)
Query: 69 FTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCL-KTLIGHTNYVFCVNFNPQ- 126
F H + + +++S SDD T++LW+ L +T GH ++V CV FNP+
Sbjct: 93 FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKD 152
Query: 127 SNMIVSGAFDETVRIWDV-KTGKCLKVLPAHSDPVTAVDFNR--DGTMIVTSSYDGLCRI 183
+ SG D TV++W + ++ + V VD+ D ++T+S D +I
Sbjct: 153 PSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKI 212
Query: 184 WDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTN 243
WD T C+ TL + VSF F P I+ G+ D TL++WN ST K+ KT
Sbjct: 213 WDYQTKSCVATL-EGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLE 271
Query: 244 SKYCISSTFSVTNGKYIVSGSEDSCVYL 271
+CI +T YI SG ++ L
Sbjct: 272 RSWCI-ATHPTGRKNYIASGFDNGFTVL 298
Score = 82.4 bits (202), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 63/241 (26%), Positives = 116/241 (48%), Gaps = 14/241 (5%)
Query: 81 FSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVR 140
F + +++ SDD IR+++ T + H +Y+ + +P ++SG+ D TV+
Sbjct: 63 FIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVK 122
Query: 141 IWDVKTGKCL-KVLPAHSDPVTAVDFN-RDGTMIVTSSYDGLCRIWDASTGHCMKTLIDD 198
+W+ + L + H V V FN +D + + D ++W TL
Sbjct: 123 LWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTG 182
Query: 199 ENPPVSFVKFSP--NGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTN 256
+ V++V + P + +++ + D T+++W+Y T + T GH ++ +F+V +
Sbjct: 183 QERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSN-----VSFAVFH 237
Query: 257 G--KYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPT--ENIIASGALDNDRT 312
I+SGSED + +W + KV + L + +A+HPT +N IASG DN T
Sbjct: 238 PTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASG-FDNGFT 296
Query: 313 V 313
V
Sbjct: 297 V 297
Score = 79.0 bits (193), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 57/253 (22%), Positives = 115/253 (45%), Gaps = 7/253 (2%)
Query: 67 QKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQ 126
+ F+ V + F ++++ + LW+ T ++++ V F +
Sbjct: 7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIAR 66
Query: 127 SNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDA 186
N I+ G+ D +R+++ TG+ + AH D + ++ + +++ S D ++W+
Sbjct: 67 KNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNW 126
Query: 187 STGHCMKTLIDDENPPVSFVKFSPNGKFILV-GTLDNTLRLWNYSTGKILKTYTGHTNSK 245
++ + V V F+P G LD T+++W S G+ +T T +
Sbjct: 127 ENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVW--SLGQSTPNFTLTTGQE 184
Query: 246 YCISST--FSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIA 303
++ + + + Y+++ S+D + +W+ Q++ V LEGH V HPT II
Sbjct: 185 RGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIII 244
Query: 304 SGALDNDRTVKIW 316
SG+ D T+KIW
Sbjct: 245 SGS--EDGTLKIW 255
Score = 68.2 bits (165), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 68/144 (47%), Gaps = 10/144 (6%)
Query: 13 YTLTQTLNGHLRAISSVKFS-HDGRLLASSSADKXXXXXXXXXXXXXXXXXXXXLQKFTG 71
+ L QT GH + V F+ D AS D+ TG
Sbjct: 130 WALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT-------TG 182
Query: 72 HEQGVS--DLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNM 129
E+GV+ D D ++++ASDD TI++WD T +C+ TL GH + V F+P +
Sbjct: 183 QERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPI 242
Query: 130 IVSGAFDETVRIWDVKTGKCLKVL 153
I+SG+ D T++IW+ T K K L
Sbjct: 243 IISGSEDGTLKIWNSSTYKVEKTL 266
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 68/133 (51%), Gaps = 4/133 (3%)
Query: 67 QKFTGHEQGVSDLVFS-SDSRFLVSASDDKTIRLWDVPTATCLKTLI-GHTNYVFCVNFN 124
Q F GHE V + F+ D S D+T+++W + +T TL G V V++
Sbjct: 134 QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYY 193
Query: 125 PQSN--MIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCR 182
P + +++ + D T++IWD +T C+ L H V+ F+ +I++ S DG +
Sbjct: 194 PLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLK 253
Query: 183 IWDASTGHCMKTL 195
IW++ST KTL
Sbjct: 254 IWNSSTYKVEKTL 266
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 57/117 (48%), Gaps = 5/117 (4%)
Query: 203 VSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVS 262
V + F P ++L + LWNY T +++ ++ + + + +I+
Sbjct: 16 VKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQV---TETPVRAGKFIARKNWIIV 72
Query: 263 GSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRTVKIWTQE 319
GS+D + ++ + + V E H D + S+A HPT+ + SG+ +D TVK+W E
Sbjct: 73 GSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGS--DDLTVKLWNWE 127
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 64/208 (30%), Positives = 99/208 (47%), Gaps = 7/208 (3%)
Query: 69 FTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCL-KTLIGHTNYVFCVNFNPQS 127
F H + + +++S SDD T++LW+ L +T GH ++V CV FNP+
Sbjct: 93 FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKD 152
Query: 128 -NMIVSGAFDETVRIWDV-KTGKCLKVLPAHSDPVTAVDFNR--DGTMIVTSSYDGLCRI 183
+ SG D TV++W + ++ + V VD+ D ++T+S D +I
Sbjct: 153 PSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKI 212
Query: 184 WDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTN 243
WD T C+ TL + VSF F P I+ G+ D TL++WN ST K+ KT
Sbjct: 213 WDYQTKSCVATL-EGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLE 271
Query: 244 SKYCISSTFSVTNGKYIVSGSEDSCVYL 271
+CI +T YI SG ++ L
Sbjct: 272 RSWCI-ATHPTGRKNYIASGFDNGFTVL 298
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 63/241 (26%), Positives = 115/241 (47%), Gaps = 14/241 (5%)
Query: 81 FSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVR 140
F + +++ SDD IR+++ T + H +Y+ + +P ++SG+ D TV+
Sbjct: 63 FIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVK 122
Query: 141 IWDVKTGKCL-KVLPAHSDPVTAVDFN-RDGTMIVTSSYDGLCRIWDASTGHCMKTLIDD 198
+W+ + L + H V V FN +D + + D ++W TL
Sbjct: 123 LWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTG 182
Query: 199 ENPPVSFVKFSP--NGKFILVGTLDNTLRLWNYSTGKILKTYTGH-TNSKYCI-SSTFSV 254
+ V++V + P + +++ + D T+++W+Y T + T GH +N + + T +
Sbjct: 183 QERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPI 242
Query: 255 TNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPT--ENIIASGALDNDRT 312
I+SGSED + +W + KV + L + +A+HPT +N IASG DN T
Sbjct: 243 -----IISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASG-FDNGFT 296
Query: 313 V 313
V
Sbjct: 297 V 297
Score = 77.8 bits (190), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 53/223 (23%), Positives = 105/223 (47%), Gaps = 7/223 (3%)
Query: 97 IRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAH 156
+ +W+ T ++++ V F + N I+ G+ D +R+++ TG+ + AH
Sbjct: 37 VEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAH 96
Query: 157 SDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFIL 216
D + ++ + +++ S D ++W+ ++ + V V F+P
Sbjct: 97 PDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTF 156
Query: 217 V-GTLDNTLRLWNYSTGKILKTYTGHTNSKYCISST--FSVTNGKYIVSGSEDSCVYLWE 273
G LD T+++W S G+ +T T + ++ + + + Y+++ S+D + +W+
Sbjct: 157 ASGCLDRTVKVW--SLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWD 214
Query: 274 LQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRTVKIW 316
Q++ V LEGH V HPT II SG+ D T+KIW
Sbjct: 215 YQTKSCVATLEGHMSNVSFAVFHPTLPIIISGS--EDGTLKIW 255
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 68/144 (47%), Gaps = 10/144 (6%)
Query: 13 YTLTQTLNGHLRAISSVKFS-HDGRLLASSSADKXXXXXXXXXXXXXXXXXXXXLQKFTG 71
+ L QT GH + V F+ D AS D+ TG
Sbjct: 130 WALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT-------TG 182
Query: 72 HEQGVS--DLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNM 129
E+GV+ D D ++++ASDD TI++WD T +C+ TL GH + V F+P +
Sbjct: 183 QERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPI 242
Query: 130 IVSGAFDETVRIWDVKTGKCLKVL 153
I+SG+ D T++IW+ T K K L
Sbjct: 243 IISGSEDGTLKIWNSSTYKVEKTL 266
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 68/133 (51%), Gaps = 4/133 (3%)
Query: 67 QKFTGHEQGVSDLVFS-SDSRFLVSASDDKTIRLWDVPTATCLKTLI-GHTNYVFCVNFN 124
Q F GHE V + F+ D S D+T+++W + +T TL G V V++
Sbjct: 134 QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYY 193
Query: 125 PQSN--MIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCR 182
P + +++ + D T++IWD +T C+ L H V+ F+ +I++ S DG +
Sbjct: 194 PLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLK 253
Query: 183 IWDASTGHCMKTL 195
IW++ST KTL
Sbjct: 254 IWNSSTYKVEKTL 266
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 61/128 (47%), Gaps = 5/128 (3%)
Query: 192 MKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISST 251
+K + + V + F P ++L + +WNY T +++ ++ + +
Sbjct: 5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSI---QVTETPVRAG 61
Query: 252 FSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDR 311
+ +I+ GS+D + ++ + + V E H D + S+A HPT+ + SG+ +D
Sbjct: 62 KFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGS--DDL 119
Query: 312 TVKIWTQE 319
TVK+W E
Sbjct: 120 TVKLWNWE 127
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 93.6 bits (231), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 64/208 (30%), Positives = 99/208 (47%), Gaps = 7/208 (3%)
Query: 69 FTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCL-KTLIGHTNYVFCVNFNPQS 127
F H + + +++S SDD T++LW+ L +T GH ++V CV FNP+
Sbjct: 93 FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKD 152
Query: 128 -NMIVSGAFDETVRIWDV-KTGKCLKVLPAHSDPVTAVDFNR--DGTMIVTSSYDGLCRI 183
+ SG D TV++W + ++ + V VD+ D ++T+S D +I
Sbjct: 153 PSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKI 212
Query: 184 WDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTN 243
WD T C+ TL + VSF F P I+ G+ D TL++WN ST K+ KT
Sbjct: 213 WDYQTKSCVATL-EGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLE 271
Query: 244 SKYCISSTFSVTNGKYIVSGSEDSCVYL 271
+CI +T YI SG ++ L
Sbjct: 272 RSWCI-ATHPTGRKNYIASGFDNGFTVL 298
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 63/241 (26%), Positives = 115/241 (47%), Gaps = 14/241 (5%)
Query: 81 FSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVR 140
F + +++ SDD IR+++ T + H +Y+ + +P ++SG+ D TV+
Sbjct: 63 FIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVK 122
Query: 141 IWDVKTGKCL-KVLPAHSDPVTAVDFN-RDGTMIVTSSYDGLCRIWDASTGHCMKTLIDD 198
+W+ + L + H V V FN +D + + D ++W TL
Sbjct: 123 LWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTG 182
Query: 199 ENPPVSFVKFSP--NGKFILVGTLDNTLRLWNYSTGKILKTYTGH-TNSKYCI-SSTFSV 254
+ V++V + P + +++ + D T+++W+Y T + T GH +N + + T +
Sbjct: 183 QERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPI 242
Query: 255 TNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPT--ENIIASGALDNDRT 312
I+SGSED + +W + KV + L + +A+HPT +N IASG DN T
Sbjct: 243 -----IISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASG-FDNGFT 296
Query: 313 V 313
V
Sbjct: 297 V 297
Score = 78.6 bits (192), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 57/253 (22%), Positives = 115/253 (45%), Gaps = 7/253 (2%)
Query: 67 QKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQ 126
+ F+ V + F ++++ + LW+ T ++++ V F +
Sbjct: 7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIAR 66
Query: 127 SNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDA 186
N I+ G+ D +R+++ TG+ + AH D + ++ + +++ S D ++W+
Sbjct: 67 KNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNW 126
Query: 187 STGHCMKTLIDDENPPVSFVKFSPNGKFILV-GTLDNTLRLWNYSTGKILKTYTGHTNSK 245
++ + V V F+P G LD T+++W S G+ +T T +
Sbjct: 127 ENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVW--SLGQSTPNFTLTTGQE 184
Query: 246 YCISST--FSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIA 303
++ + + + Y+++ S+D + +W+ Q++ V LEGH V HPT II
Sbjct: 185 RGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIII 244
Query: 304 SGALDNDRTVKIW 316
SG+ D T+KIW
Sbjct: 245 SGS--EDGTLKIW 255
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 68/144 (47%), Gaps = 10/144 (6%)
Query: 13 YTLTQTLNGHLRAISSVKFS-HDGRLLASSSADKXXXXXXXXXXXXXXXXXXXXLQKFTG 71
+ L QT GH + V F+ D AS D+ TG
Sbjct: 130 WALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT-------TG 182
Query: 72 HEQGVS--DLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNM 129
E+GV+ D D ++++ASDD TI++WD T +C+ TL GH + V F+P +
Sbjct: 183 QERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPI 242
Query: 130 IVSGAFDETVRIWDVKTGKCLKVL 153
I+SG+ D T++IW+ T K K L
Sbjct: 243 IISGSEDGTLKIWNSSTYKVEKTL 266
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 68/133 (51%), Gaps = 4/133 (3%)
Query: 67 QKFTGHEQGVSDLVFS-SDSRFLVSASDDKTIRLWDVPTATCLKTLI-GHTNYVFCVNFN 124
Q F GHE V + F+ D S D+T+++W + +T TL G V V++
Sbjct: 134 QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYY 193
Query: 125 PQSN--MIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCR 182
P + +++ + D T++IWD +T C+ L H V+ F+ +I++ S DG +
Sbjct: 194 PLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLK 253
Query: 183 IWDASTGHCMKTL 195
IW++ST KTL
Sbjct: 254 IWNSSTYKVEKTL 266
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 61/128 (47%), Gaps = 5/128 (3%)
Query: 192 MKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISST 251
+K + + V + F P ++L + LWNY T +++ ++ + +
Sbjct: 5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSI---QVTETPVRAG 61
Query: 252 FSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDR 311
+ +I+ GS+D + ++ + + V E H D + S+A HPT+ + SG+ +D
Sbjct: 62 KFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGS--DDL 119
Query: 312 TVKIWTQE 319
TVK+W E
Sbjct: 120 TVKLWNWE 127
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 60/207 (28%), Positives = 97/207 (46%), Gaps = 5/207 (2%)
Query: 67 QKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQ 126
++ GH +S F D++ +V++S D T LWD+ T T GHT V ++ P
Sbjct: 148 RELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPD 206
Query: 127 SNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDA 186
+ + VSGA D + ++WDV+ G C + H + A+ F +G T S D CR++D
Sbjct: 207 TRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDL 266
Query: 187 STGHCMKTLIDDE-NPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSK 245
+ T D ++ V FS +G+ +L G D +W+ GH N
Sbjct: 267 RADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRV 326
Query: 246 YCISSTFSVTNGKYIVSGSEDSCVYLW 272
C+ T +G + +GS DS + +W
Sbjct: 327 SCLGVT---DDGMAVATGSWDSFLKIW 350
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 73/304 (24%), Positives = 129/304 (42%), Gaps = 17/304 (5%)
Query: 17 QTLNGHLRAISSVKFSHDGRLLASSSADKXXXXXXXXXXXXXXXXXXXXLQKFTGHEQGV 76
+TL GHL I ++ + D RLL S+S D + V
Sbjct: 60 RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNK--------VHAIPLRSSWV 111
Query: 77 SDLVFSSDSRFLVSASDDKTIRLWDVPT----ATCLKTLIGHTNYVFCVNFNPQSNMIVS 132
++ ++ D ++++ T + L GHT Y+ C F N IV+
Sbjct: 112 MTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF-LDDNQIVT 170
Query: 133 GAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCM 192
+ D T +WD++TG+ H+ V ++ D + V+ + D ++WD G C
Sbjct: 171 SSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCR 230
Query: 193 KTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTF 252
+T E+ ++ + F PNG G+ D T RL++ + L TY+ H N I+S
Sbjct: 231 QTFTGHESD-INAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS-HDNIICGITSVS 288
Query: 253 SVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRT 312
+G+ +++G +D +W+ L GH + V + +A+G+ D+
Sbjct: 289 FSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDS--F 346
Query: 313 VKIW 316
+KIW
Sbjct: 347 LKIW 350
Score = 61.2 bits (147), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 58/123 (47%), Gaps = 6/123 (4%)
Query: 67 QKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFC----VN 122
Q FTGHE ++ + F + + SDD T RL+D+ L T H N + C V+
Sbjct: 231 QTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTY-SHDN-IICGITSVS 288
Query: 123 FNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCR 182
F+ ++++G D +WD VL H + V+ + DG + T S+D +
Sbjct: 289 FSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLK 348
Query: 183 IWD 185
IW+
Sbjct: 349 IWN 351
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 60/207 (28%), Positives = 97/207 (46%), Gaps = 5/207 (2%)
Query: 67 QKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQ 126
++ GH +S F D++ +V++S D T LWD+ T T GHT V ++ P
Sbjct: 137 RELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPD 195
Query: 127 SNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDA 186
+ + VSGA D + ++WDV+ G C + H + A+ F +G T S D CR++D
Sbjct: 196 TRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDL 255
Query: 187 STGHCMKTLIDDE-NPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSK 245
+ T D ++ V FS +G+ +L G D +W+ GH N
Sbjct: 256 RADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRV 315
Query: 246 YCISSTFSVTNGKYIVSGSEDSCVYLW 272
C+ T +G + +GS DS + +W
Sbjct: 316 SCLGVT---DDGMAVATGSWDSFLKIW 339
Score = 85.9 bits (211), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 73/304 (24%), Positives = 129/304 (42%), Gaps = 17/304 (5%)
Query: 17 QTLNGHLRAISSVKFSHDGRLLASSSADKXXXXXXXXXXXXXXXXXXXXLQKFTGHEQGV 76
+TL GHL I ++ + D RLL S+S D + V
Sbjct: 49 RTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNK--------VHAIPLRSSWV 100
Query: 77 SDLVFSSDSRFLVSASDDKTIRLWDVPT----ATCLKTLIGHTNYVFCVNFNPQSNMIVS 132
++ ++ D ++++ T + L GHT Y+ C F N IV+
Sbjct: 101 MTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF-LDDNQIVT 159
Query: 133 GAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCM 192
+ D T +WD++TG+ H+ V ++ D + V+ + D ++WD G C
Sbjct: 160 SSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCR 219
Query: 193 KTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTF 252
+T E+ ++ + F PNG G+ D T RL++ + L TY+ H N I+S
Sbjct: 220 QTFTGHESD-INAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS-HDNIICGITSVS 277
Query: 253 SVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRT 312
+G+ +++G +D +W+ L GH + V + +A+G+ D+
Sbjct: 278 FSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDS--F 335
Query: 313 VKIW 316
+KIW
Sbjct: 336 LKIW 339
Score = 61.2 bits (147), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 58/123 (47%), Gaps = 6/123 (4%)
Query: 67 QKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFC----VN 122
Q FTGHE ++ + F + + SDD T RL+D+ L T H N + C V+
Sbjct: 220 QTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTY-SHDN-IICGITSVS 277
Query: 123 FNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCR 182
F+ ++++G D +WD VL H + V+ + DG + T S+D +
Sbjct: 278 FSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLK 337
Query: 183 IWD 185
IW+
Sbjct: 338 IWN 340
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 60/207 (28%), Positives = 97/207 (46%), Gaps = 5/207 (2%)
Query: 67 QKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQ 126
++ GH +S F D++ +V++S D T LWD+ T T GHT V ++ P
Sbjct: 137 RELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPD 195
Query: 127 SNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDA 186
+ + VSGA D + ++WDV+ G C + H + A+ F +G T S D CR++D
Sbjct: 196 TRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDL 255
Query: 187 STGHCMKTLIDDE-NPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSK 245
+ T D ++ V FS +G+ +L G D +W+ GH N
Sbjct: 256 RADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRV 315
Query: 246 YCISSTFSVTNGKYIVSGSEDSCVYLW 272
C+ T +G + +GS DS + +W
Sbjct: 316 SCLGVT---DDGMAVATGSWDSFLKIW 339
Score = 85.9 bits (211), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 73/304 (24%), Positives = 129/304 (42%), Gaps = 17/304 (5%)
Query: 17 QTLNGHLRAISSVKFSHDGRLLASSSADKXXXXXXXXXXXXXXXXXXXXLQKFTGHEQGV 76
+TL GHL I ++ + D RLL S+S D + V
Sbjct: 49 RTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNK--------VHAIPLRSSWV 100
Query: 77 SDLVFSSDSRFLVSASDDKTIRLWDVPT----ATCLKTLIGHTNYVFCVNFNPQSNMIVS 132
++ ++ D ++++ T + L GHT Y+ C F N IV+
Sbjct: 101 MTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF-LDDNQIVT 159
Query: 133 GAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCM 192
+ D T +WD++TG+ H+ V ++ D + V+ + D ++WD G C
Sbjct: 160 SSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCR 219
Query: 193 KTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTF 252
+T E+ ++ + F PNG G+ D T RL++ + L TY+ H N I+S
Sbjct: 220 QTFTGHESD-INAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS-HDNIICGITSVS 277
Query: 253 SVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRT 312
+G+ +++G +D +W+ L GH + V + +A+G+ D+
Sbjct: 278 FSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDS--F 335
Query: 313 VKIW 316
+KIW
Sbjct: 336 LKIW 339
Score = 61.2 bits (147), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 58/123 (47%), Gaps = 6/123 (4%)
Query: 67 QKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFC----VN 122
Q FTGHE ++ + F + + SDD T RL+D+ L T H N + C V+
Sbjct: 220 QTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTY-SHDN-IICGITSVS 277
Query: 123 FNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCR 182
F+ ++++G D +WD VL H + V+ + DG + T S+D +
Sbjct: 278 FSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLK 337
Query: 183 IWD 185
IW+
Sbjct: 338 IWN 340
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 60/207 (28%), Positives = 97/207 (46%), Gaps = 5/207 (2%)
Query: 67 QKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQ 126
++ GH +S F D++ +V++S D T LWD+ T T GHT V ++ P
Sbjct: 137 RELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPD 195
Query: 127 SNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDA 186
+ + VSGA D + ++WDV+ G C + H + A+ F +G T S D CR++D
Sbjct: 196 TRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDL 255
Query: 187 STGHCMKTLIDDE-NPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSK 245
+ T D ++ V FS +G+ +L G D +W+ GH N
Sbjct: 256 RADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRV 315
Query: 246 YCISSTFSVTNGKYIVSGSEDSCVYLW 272
C+ T +G + +GS DS + +W
Sbjct: 316 SCLGVT---DDGMAVATGSWDSFLKIW 339
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 73/304 (24%), Positives = 129/304 (42%), Gaps = 17/304 (5%)
Query: 17 QTLNGHLRAISSVKFSHDGRLLASSSADKXXXXXXXXXXXXXXXXXXXXLQKFTGHEQGV 76
+TL GHL I ++ + D RLL S+S D + V
Sbjct: 49 RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNK--------VHAIPLRSSWV 100
Query: 77 SDLVFSSDSRFLVSASDDKTIRLWDVPT----ATCLKTLIGHTNYVFCVNFNPQSNMIVS 132
++ ++ D ++++ T + L GHT Y+ C F N IV+
Sbjct: 101 MTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF-LDDNQIVT 159
Query: 133 GAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCM 192
+ D T +WD++TG+ H+ V ++ D + V+ + D ++WD G C
Sbjct: 160 SSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCR 219
Query: 193 KTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTF 252
+T E+ ++ + F PNG G+ D T RL++ + L TY+ H N I+S
Sbjct: 220 QTFTGHESD-INAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS-HDNIICGITSVS 277
Query: 253 SVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRT 312
+G+ +++G +D +W+ L GH + V + +A+G+ D+
Sbjct: 278 FSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDS--F 335
Query: 313 VKIW 316
+KIW
Sbjct: 336 LKIW 339
Score = 61.2 bits (147), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 58/123 (47%), Gaps = 6/123 (4%)
Query: 67 QKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFC----VN 122
Q FTGHE ++ + F + + SDD T RL+D+ L T H N + C V+
Sbjct: 220 QTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTY-SHDN-IICGITSVS 277
Query: 123 FNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCR 182
F+ ++++G D +WD VL H + V+ + DG + T S+D +
Sbjct: 278 FSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLK 337
Query: 183 IWD 185
IW+
Sbjct: 338 IWN 340
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 60/207 (28%), Positives = 97/207 (46%), Gaps = 5/207 (2%)
Query: 67 QKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQ 126
++ GH +S F D++ +V++S D T LWD+ T T GHT V ++ P
Sbjct: 137 RELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPD 195
Query: 127 SNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDA 186
+ + VSGA D + ++WDV+ G C + H + A+ F +G T S D CR++D
Sbjct: 196 TRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDL 255
Query: 187 STGHCMKTLIDDE-NPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSK 245
+ T D ++ V FS +G+ +L G D +W+ GH N
Sbjct: 256 RADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRV 315
Query: 246 YCISSTFSVTNGKYIVSGSEDSCVYLW 272
C+ T +G + +GS DS + +W
Sbjct: 316 SCLGVT---DDGMAVATGSWDSFLKIW 339
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 73/304 (24%), Positives = 129/304 (42%), Gaps = 17/304 (5%)
Query: 17 QTLNGHLRAISSVKFSHDGRLLASSSADKXXXXXXXXXXXXXXXXXXXXLQKFTGHEQGV 76
+TL GHL I ++ + D RLL S+S D + V
Sbjct: 49 RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNK--------VHAIPLRSSWV 100
Query: 77 SDLVFSSDSRFLVSASDDKTIRLWDVPT----ATCLKTLIGHTNYVFCVNFNPQSNMIVS 132
++ ++ D ++++ T + L GHT Y+ C F N IV+
Sbjct: 101 MTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF-LDDNQIVT 159
Query: 133 GAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCM 192
+ D T +WD++TG+ H+ V ++ D + V+ + D ++WD G C
Sbjct: 160 SSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCR 219
Query: 193 KTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTF 252
+T E+ ++ + F PNG G+ D T RL++ + L TY+ H N I+S
Sbjct: 220 QTFTGHESD-INAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS-HDNIICGITSVS 277
Query: 253 SVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRT 312
+G+ +++G +D +W+ L GH + V + +A+G+ D+
Sbjct: 278 FSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDS--F 335
Query: 313 VKIW 316
+KIW
Sbjct: 336 LKIW 339
Score = 61.2 bits (147), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 58/123 (47%), Gaps = 6/123 (4%)
Query: 67 QKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFC----VN 122
Q FTGHE ++ + F + + SDD T RL+D+ L T H N + C V+
Sbjct: 220 QTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTY-SHDN-IICGITSVS 277
Query: 123 FNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCR 182
F+ ++++G D +WD VL H + V+ + DG + T S+D +
Sbjct: 278 FSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLK 337
Query: 183 IWD 185
IW+
Sbjct: 338 IWN 340
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 67/228 (29%), Positives = 109/228 (47%), Gaps = 16/228 (7%)
Query: 69 FTGHEQGVSDLVFSSDSRF-LVSASDDKTIRLWDVPTATCLKTL-----IGHTNYVFCVN 122
TGH+ S + D L++ S D+T LWDV T + GHT V ++
Sbjct: 153 LTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLS 212
Query: 123 FNP-QSNMIVSGAFDETVRIWDVK-TGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGL 180
N +NM +SG+ D TVR+WD++ T + ++ H + +V F DG T S DG
Sbjct: 213 INSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGT 272
Query: 181 CRIWDASTGHCMKTL------IDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGK- 233
CR++D TGH ++ D+E P V+ V FS +G+ + G + +W+ +
Sbjct: 273 CRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEM 332
Query: 234 ILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQS-RKVV 280
+L T + + IS ++G + +GS D + +W RK+V
Sbjct: 333 VLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHRKIV 380
Score = 74.7 bits (182), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 58/220 (26%), Positives = 101/220 (45%), Gaps = 25/220 (11%)
Query: 107 CLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFN 166
C +TL GH+ V+ +++ P+ N IVS + D + +W+ T + + H V F
Sbjct: 58 CCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFA 117
Query: 167 RDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFV-----------KFSPNGKFI 215
+G + D C I++ S+ D N PVS V ++ P+ +
Sbjct: 118 PNGQSVACGGLDSACSIFNLSS-----QADRDGNMPVSRVLTGHKGYASSCQYVPDQETR 172
Query: 216 LV-GTLDNTLRLWNYSTGKILKTY-----TGHTNSKYCISSTFSVTNGKYIVSGSEDSCV 269
L+ G+ D T LW+ +TG+ + + +GHT +S + + N +SGS D+ V
Sbjct: 173 LITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTAD--VLSLSINSLNANMFISGSCDTTV 230
Query: 270 YLWELQ-SRKVVQKLEGHTDPVISVASHPTENIIASGALD 308
LW+L+ + + V+ GH + SV P +G+ D
Sbjct: 231 RLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDD 270
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 55/230 (23%), Positives = 102/230 (44%), Gaps = 19/230 (8%)
Query: 67 QKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQ 126
+ GH V L ++ + ++VSAS D + +W+ T+ + H +V F P
Sbjct: 60 RTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPN 119
Query: 127 SNMIVSGAFDETVRIWDVKTGK-------CLKVLPAHSDPVTAVDFNRDG-TMIVTSSYD 178
+ G D I+++ + +VL H ++ + D T ++T S D
Sbjct: 120 GQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGD 179
Query: 179 GLCRIWDASTGHCMKTLIDDENPP------VSFVKFSPNGKFILVGTLDNTLRLWNYS-T 231
C +WD +TG + ++ E P +S S N + G+ D T+RLW+ T
Sbjct: 180 QTCVLWDVTTGQRI-SIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRIT 238
Query: 232 GKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQ 281
+ ++TY GH I+S +G+ +GS+D L+++++ +Q
Sbjct: 239 SRAVRTYHGHEGD---INSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQ 285
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 68/168 (40%), Gaps = 38/168 (22%)
Query: 66 LQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNP 125
++ + GHE ++ + F D + + SDD T RL+D+ T GH V+ N P
Sbjct: 242 VRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRT--------GHQLQVY--NREP 291
Query: 126 QSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWD 185
N D + I VT+V F+ G ++ +G C +WD
Sbjct: 292 DRN-------DNELPI------------------VTSVAFSISGRLLFAGYSNGDCYVWD 326
Query: 186 ASTGHC---MKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYS 230
+ TL + +S + S +G + G+ D L++W +S
Sbjct: 327 TLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFS 374
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 89/176 (50%), Gaps = 18/176 (10%)
Query: 67 QKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQ 126
+ TGH VSDL S ++ F +S+S DKT+RLWD+ T T K +GH + V+ V F+P
Sbjct: 70 KALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPD 129
Query: 127 SNMIVSGAFDETVRIWDVKTGKCLKVLPA----HSDPVTAVDFNRD----------GTMI 172
+ I+S + +++W++ G+C K A HSD V+ V ++
Sbjct: 130 NRQILSAGAEREIKLWNI-LGEC-KFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYF 187
Query: 173 VTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWN 228
+ +DG ++W+ T ++ V+ + SPNGK+I G D L +W+
Sbjct: 188 ASVGWDGRLKVWN--TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWD 241
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 73/276 (26%), Positives = 129/276 (46%), Gaps = 32/276 (11%)
Query: 71 GHEQGVSDLV--FSS----DSRFLVSASDDKTIRLWDVPT-------ATCLKTLIGHTNY 117
GH V+ +V FS DS L+S S DKT+ +W + K L GH ++
Sbjct: 19 GHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHF 78
Query: 118 VFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSY 177
V + + ++ +S ++D+T+R+WD++TG K H V +V F+ D I+++
Sbjct: 79 VSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGA 138
Query: 178 DGLCRIWDASTGHCMKTLIDDENPP--VSFVKFSPNGK-----------FILVGTLDNTL 224
+ ++W+ G C + + EN VS V++SP K F VG D L
Sbjct: 139 EREIKLWNI-LGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVG-WDGRL 196
Query: 225 RLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLE 284
++WN + +I T+ H ++ +S + NGKYI +G +D + +W++ + Q+
Sbjct: 197 KVWN-TNFQIRYTFKAHESNVNHLSIS---PNGKYIATGGKDKKLLIWDILNLTYPQREF 252
Query: 285 GHTDPVISVASHPTENIIASGALDNDRTVKIWTQEK 320
+ +A +P +A G + + TQ K
Sbjct: 253 DAGSTINQIAFNPKLQWVAVGTDQGVKIFNLMTQSK 288
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 65/296 (21%), Positives = 118/296 (39%), Gaps = 39/296 (13%)
Query: 17 QTLNGHLRAISSVKFSHDGRLLASSSADKXXXXXXXXXXXXXXXXXXXXLQKFTGHEQGV 76
+ L GH +S + S + SSS DK ++F GH+ V
Sbjct: 70 KALTGHNHFVSDLALSQENCFAISSSWDK--------TLRLWDLRTGTTYKRFVGHQSEV 121
Query: 77 SDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTL--IGHTNYVFCVNFNP---QSNMI- 130
+ FS D+R ++SA ++ I+LW++ + H+++V CV ++P +N +
Sbjct: 122 YSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQ 181
Query: 131 ------VSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIW 184
S +D +++W+ + AH V + + +G I T D IW
Sbjct: 182 PFAPYFASVGWDGRLKVWNTNF-QIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIW 240
Query: 185 DA-STGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTN 243
D + + + D ++ + F+P +++ VGT D ++++N T +
Sbjct: 241 DILNLTYPQREF--DAGSTINQIAFNPKLQWVAVGT-DQGVKIFNLMT---------QSK 288
Query: 244 SKYCISSTFSVTNGKYIVSGSEDSCVYL-WELQSRKVVQKLEGHTDPVISVASHPT 298
+ C +T + G C L W +K+ G TD VI S T
Sbjct: 289 APVCTIEAEPITKAEG-QKGKNPQCTSLAWNALGKKL---FAGFTDGVIRTFSFET 340
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 71/160 (44%), Gaps = 17/160 (10%)
Query: 152 VLPAHSDPVTAV------DFNRDGTMIVTSSYDGLCRIW----DASTGH--CMKTLIDDE 199
+L HSD VT++ N D ++++ S D IW + G+ +
Sbjct: 16 ILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGH 75
Query: 200 NPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKY 259
N VS + S F + + D TLRLW+ TG K + GH + Y ++ FS N +
Sbjct: 76 NHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVA--FSPDNRQI 133
Query: 260 IVSGSEDSCVYLWEL--QSRKVVQKLEGHTDPVISVASHP 297
+ +G+E + LW + + + + E H+D V V P
Sbjct: 134 LSAGAERE-IKLWNILGECKFSSAEKENHSDWVSCVRYSP 172
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 89.4 bits (220), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 95/206 (46%), Gaps = 10/206 (4%)
Query: 72 HEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQS--NM 129
H +S F++ +++AS D T LWDV + L++ GH V C++ P N
Sbjct: 153 HTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNT 212
Query: 130 IVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTG 189
VSG D+ +WD+++G+C++ H V +V + G + S D CR++D
Sbjct: 213 FVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRAD 272
Query: 190 HCMKTLIDDENPPV---SFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKY 246
+ I + + S V FS +G+ + G D T+ +W+ G + GH N
Sbjct: 273 R--EVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENR-- 328
Query: 247 CISSTFSVTNGKYIVSGSEDSCVYLW 272
+S+ +G SGS D + +W
Sbjct: 329 -VSTLRVSPDGTAFCSGSWDHTLRVW 353
Score = 81.3 bits (199), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 101/211 (47%), Gaps = 6/211 (2%)
Query: 109 KTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDF--N 166
K++ HTNY+ +F I++ + D T +WDV++G+ L+ H V +D +
Sbjct: 148 KSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPS 207
Query: 167 RDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRL 226
G V+ D +WD +G C++ E+ V+ V++ P+G G+ D T RL
Sbjct: 208 ETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHES-DVNSVRYYPSGDAFASGSDDATCRL 266
Query: 227 WNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGH 286
++ + + Y+ + S FS++ G+ + +G D + +W++ V L GH
Sbjct: 267 YDLRADREVAIYSKESIIFGASSVDFSLS-GRLLFAGYNDYTINVWDVLKGSRVSILFGH 325
Query: 287 TDPVISVASHPTENIIASGALDNDRTVKIWT 317
+ V ++ P SG+ D+ T+++W
Sbjct: 326 ENRVSTLRVSPDGTAFCSGSWDH--TLRVWA 354
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/225 (27%), Positives = 97/225 (43%), Gaps = 15/225 (6%)
Query: 109 KTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRD 168
+TL GH N V C+++ IVS + D V +WD T + V A +
Sbjct: 58 RTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPS 117
Query: 169 GTMIVTSSYDGLCRIWDAS-----TGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNT 223
G I D C ++ + K + +S F+ + IL + D T
Sbjct: 118 GCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGT 177
Query: 224 LRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKL 283
LW+ +G++L+++ GH C+ S T G VSG D +W+++S + VQ
Sbjct: 178 CALWDVESGQLLQSFHGHGADVLCLDLAPSET-GNTFVSGGCDKKAMVWDMRSGQCVQAF 236
Query: 284 EGHTDPVISVASHPTENIIASGA---------LDNDRTVKIWTQE 319
E H V SV +P+ + ASG+ L DR V I+++E
Sbjct: 237 ETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKE 281
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 59/122 (48%), Gaps = 4/122 (3%)
Query: 66 LQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVF---CVN 122
+Q F HE V+ + + S SDD T RL+D+ A + + +F V+
Sbjct: 233 VQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDL-RADREVAIYSKESIIFGASSVD 291
Query: 123 FNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCR 182
F+ ++ +G D T+ +WDV G + +L H + V+ + + DGT + S+D R
Sbjct: 292 FSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLR 351
Query: 183 IW 184
+W
Sbjct: 352 VW 353
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 81.3 bits (199), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 62/259 (23%), Positives = 115/259 (44%), Gaps = 12/259 (4%)
Query: 15 LTQTLNGHLRAISSVKFSHDGRLLASSSADKXXXXXXXXXXXXXXXXXXXXLQKFTGHEQ 74
L +L GH + SV SH + ASSS D + +T
Sbjct: 72 LQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWT---- 127
Query: 75 GVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGA 134
L FS DS++L + + + ++ V + +L ++ + ++P + SGA
Sbjct: 128 ----LAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGA 183
Query: 135 FDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKT 194
D + I+D+ TGK L L H+ P+ ++ F+ D ++VT+S DG +I+D + T
Sbjct: 184 IDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGT 243
Query: 195 LIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSV 254
L V V F P+ + + D ++++W+ T + T+ H + + +
Sbjct: 244 L-SGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYN--- 299
Query: 255 TNGKYIVSGSEDSCVYLWE 273
NG IVS +D +++++
Sbjct: 300 GNGSKIVSVGDDQEIHIYD 318
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 103/198 (52%), Gaps = 10/198 (5%)
Query: 122 NFNPQSNMIVSGAFDETVRIWDVKTGKC--LKVLPAHSDPVTAVDFNRDGTMIVTSSYDG 179
N S +V+G+ D+ V++W + + L H V +VD + + +SS D
Sbjct: 43 NKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDA 102
Query: 180 LCRIWDASTGHCMKTLIDDENPPVSF-VKFSPNGKFILVGTLDNTLRLWNYSTGKILKTY 238
R+WD G +K++ D P ++ + FSP+ +++ GT + ++ +GK K Y
Sbjct: 103 HIRLWDLENGKQIKSI--DAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGK--KEY 158
Query: 239 TGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPT 298
+ T K+ +S +S +GKY+ SG+ D + ++++ + K++ LEGH P+ S+ P
Sbjct: 159 SLDTRGKFILSIAYS-PDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPD 217
Query: 299 ENIIASGALDNDRTVKIW 316
++ + + +D +KI+
Sbjct: 218 SQLLVTAS--DDGYIKIY 233
Score = 78.2 bits (191), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 59/238 (24%), Positives = 113/238 (47%), Gaps = 14/238 (5%)
Query: 72 HEQGVSDLVFS--------SDSRFLVSASDDKTIRLWDV--PTATCLKTLIGHTNYVFCV 121
EQ D ++S +S +V+ S D +++W +L GH V V
Sbjct: 27 QEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSV 86
Query: 122 NFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLC 181
+ + + S + D +R+WD++ GK +K + A + F+ D + T ++ G
Sbjct: 87 DISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKV 146
Query: 182 RIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGH 241
I+ +G +L D + + +SP+GK++ G +D + +++ +TGK+L T GH
Sbjct: 147 NIFGVESGKKEYSL-DTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGH 205
Query: 242 TNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTE 299
S TFS + + +V+ S+D + ++++Q + L GH V++VA P +
Sbjct: 206 AMP--IRSLTFS-PDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDD 260
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/252 (24%), Positives = 116/252 (46%), Gaps = 14/252 (5%)
Query: 69 FTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSN 128
GH+ GV + S S+S D IRLWD+ +K++ + + F+P S
Sbjct: 76 LEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQ 135
Query: 129 MIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDAST 188
+ +G V I+ V++GK L + ++ ++ DG + + + DG+ I+D +T
Sbjct: 136 YLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIAT 195
Query: 189 GHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHT----NS 244
G + TL + P+ + FSP+ + ++ + D +++++ + T +GH N
Sbjct: 196 GKLLHTL-EGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNV 254
Query: 245 KYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIAS 304
+C T + VS S D V +W++ +R V H D V V + + I S
Sbjct: 255 AFCPDDT-------HFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVS 307
Query: 305 GALDNDRTVKIW 316
+ +D+ + I+
Sbjct: 308 --VGDDQEIHIY 317
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 74.3 bits (181), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 58/251 (23%), Positives = 112/251 (44%), Gaps = 19/251 (7%)
Query: 76 VSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAF 135
+S + + + +L + ++LWDV L+ + H+ V +++N S ++ SG+
Sbjct: 150 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN--SYILSSGSR 207
Query: 136 DETVRIWDVKTGKC-LKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHC--- 191
+ DV+ + + L HS V + + DG + + D L +W ++ G
Sbjct: 208 SGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWV 267
Query: 192 -MKTLIDDENPPVSFVKFSPNGKFILV---GTLDNTLRLWNYSTGKILKTYTGHTNSKYC 247
++T + V V + P +L GT D +R+WN +G L H+
Sbjct: 268 PLQTFTQHQGA-VKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ---- 322
Query: 248 ISSTFSVTNGKYIVSGS--EDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASG 305
+ S + K ++SG + + +W+ + V +L+GHT V+S+ P +AS
Sbjct: 323 VCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASA 382
Query: 306 ALDNDRTVKIW 316
A D T+++W
Sbjct: 383 AADE--TLRLW 391
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 74/169 (43%), Gaps = 13/169 (7%)
Query: 69 FTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTA------TCLKTLIGHTNYVFCVN 122
+GH Q V L ++ D R L S +D + +W P+A L+T H V V
Sbjct: 226 LSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW--PSAPGEGGWVPLQTFTQHQGAVKAVA 283
Query: 123 FNP-QSNMIVSGAF--DETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSY-D 178
+ P QSN++ +G D +RIW+V +G CL + AHS + + +I +
Sbjct: 284 WCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQ 343
Query: 179 GLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLW 227
IW T + L + +S SP+G + D TLRLW
Sbjct: 344 NQLVIWKYPTMAKVAELKGHTSRVLSLT-MSPDGATVASAAADETLRLW 391
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 79/173 (45%), Gaps = 12/173 (6%)
Query: 18 TLNGHLRAISSVKFSHDGRLLASSSADKXXXXXXXXXXXXXXXXXXXXLQKFTGHEQGVS 77
TL+GH + + ++++ DGR LAS D LQ FT H+ V
Sbjct: 225 TLSGHSQEVCGLRWAPDGRHLASGGNDN----LVNVWPSAPGEGGWVPLQTFTQHQGAVK 280
Query: 78 DLVFSS-DSRFLVS--ASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSG- 133
+ + S L + + D+ IR+W+V + CL + H+ V + ++P ++SG
Sbjct: 281 AVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ-VCSILWSPHYKELISGH 339
Query: 134 --AFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIW 184
A ++ V IW T + L H+ V ++ + DG + +++ D R+W
Sbjct: 340 GFAQNQLV-IWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 391
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 215 ILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWEL 274
+L LDN++ LW+ S+G IL+ +Y ISS + G Y+ G+ + V LW++
Sbjct: 118 VLAVALDNSVYLWSASSGDILQLLQMEQPGEY-ISSVAWIKEGNYLAVGTSSAEVQLWDV 176
Query: 275 QSRKVVQKLEGHTDPVISVA 294
Q +K ++ + H+ V S++
Sbjct: 177 QQQKRLRNMTSHSARVGSLS 196
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 74.3 bits (181), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 58/251 (23%), Positives = 112/251 (44%), Gaps = 19/251 (7%)
Query: 76 VSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAF 135
+S + + + +L + ++LWDV L+ + H+ V +++N S ++ SG+
Sbjct: 161 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN--SYILSSGSR 218
Query: 136 DETVRIWDVKTGKC-LKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHC--- 191
+ DV+ + + L HS V + + DG + + D L +W ++ G
Sbjct: 219 SGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWV 278
Query: 192 -MKTLIDDENPPVSFVKFSPNGKFILV---GTLDNTLRLWNYSTGKILKTYTGHTNSKYC 247
++T + V V + P +L GT D +R+WN +G L H+
Sbjct: 279 PLQTFTQHQGA-VKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ---- 333
Query: 248 ISSTFSVTNGKYIVSGS--EDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASG 305
+ S + K ++SG + + +W+ + V +L+GHT V+S+ P +AS
Sbjct: 334 VCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASA 393
Query: 306 ALDNDRTVKIW 316
A D T+++W
Sbjct: 394 AADE--TLRLW 402
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 79/180 (43%), Gaps = 35/180 (19%)
Query: 69 FTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTA------TCLKTLIGHTNYVFCVN 122
+GH Q V L ++ D R L S +D + +W P+A L+T H V V
Sbjct: 237 LSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW--PSAPGEGGWVPLQTFTQHQGAVKAVA 294
Query: 123 FNP-QSNMIVSGAF--DETVRIWDVKTGKCLKVLPAHS------------DPVTAVDFNR 167
+ P QSN++ +G D +RIW+V +G CL + AHS + ++ F +
Sbjct: 295 WCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQ 354
Query: 168 DGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLW 227
+ +V Y + ++ + GH + L + SP+G + D TLRLW
Sbjct: 355 N--QLVIWKYPTMAKVAEL-KGHTSRVL---------SLTMSPDGATVASAAADETLRLW 402
Score = 57.4 bits (137), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 79/173 (45%), Gaps = 12/173 (6%)
Query: 18 TLNGHLRAISSVKFSHDGRLLASSSADKXXXXXXXXXXXXXXXXXXXXLQKFTGHEQGVS 77
TL+GH + + ++++ DGR LAS D LQ FT H+ V
Sbjct: 236 TLSGHSQEVCGLRWAPDGRHLASGGNDN----LVNVWPSAPGEGGWVPLQTFTQHQGAVK 291
Query: 78 DLVFSS-DSRFLVS--ASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSG- 133
+ + S L + + D+ IR+W+V + CL + H+ V + ++P ++SG
Sbjct: 292 AVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ-VCSILWSPHYKELISGH 350
Query: 134 --AFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIW 184
A ++ V IW T + L H+ V ++ + DG + +++ D R+W
Sbjct: 351 GFAQNQLV-IWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 402
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 215 ILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWEL 274
+L LDN++ LW+ S+G IL+ +Y ISS + G Y+ G+ + V LW++
Sbjct: 129 VLAVALDNSVYLWSASSGDILQLLQMEQPGEY-ISSVAWIKEGNYLAVGTSSAEVQLWDV 187
Query: 275 QSRKVVQKLEGHTDPVISVA 294
Q +K ++ + H+ V S++
Sbjct: 188 QQQKRLRNMTSHSARVGSLS 207
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/251 (23%), Positives = 112/251 (44%), Gaps = 19/251 (7%)
Query: 76 VSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAF 135
+S + + + +L + ++LWDV L+ + H+ V +++N S ++ SG+
Sbjct: 70 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN--SYILSSGSR 127
Query: 136 DETVRIWDVKTGKC-LKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHC--- 191
+ DV+ + + L HS V + + DG + + D L +W ++ G
Sbjct: 128 SGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWV 187
Query: 192 -MKTLIDDENPPVSFVKFSPNGKFILV---GTLDNTLRLWNYSTGKILKTYTGHTNSKYC 247
++T + V V + P +L GT D +R+WN +G L H+
Sbjct: 188 PLQTFTQHQGA-VKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ---- 242
Query: 248 ISSTFSVTNGKYIVSGS--EDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASG 305
+ S + K ++SG + + +W+ + V +L+GHT V+S+ P +AS
Sbjct: 243 VCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASA 302
Query: 306 ALDNDRTVKIW 316
A D T+++W
Sbjct: 303 AA--DETLRLW 311
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 74/169 (43%), Gaps = 13/169 (7%)
Query: 69 FTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTA------TCLKTLIGHTNYVFCVN 122
+GH Q V L ++ D R L S +D + +W P+A L+T H V V
Sbjct: 146 LSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW--PSAPGEGGWVPLQTFTQHQGAVKAVA 203
Query: 123 FNP-QSNMIVSGAF--DETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSY-D 178
+ P QSN++ +G D +RIW+V +G CL + AHS + + +I +
Sbjct: 204 WCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQ 263
Query: 179 GLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLW 227
IW T + L + +S SP+G + D TLRLW
Sbjct: 264 NQLVIWKYPTMAKVAELKGHTSRVLSLT-MSPDGATVASAAADETLRLW 311
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 78/172 (45%), Gaps = 10/172 (5%)
Query: 18 TLNGHLRAISSVKFSHDGRLLASSSADKXXXXXXXXXXXXXXXXXXXXLQKFTGHEQGVS 77
TL+GH + + ++++ DGR LAS D LQ FT H+ V
Sbjct: 145 TLSGHSQEVCGLRWAPDGRHLASGGNDN----LVNVWPSAPGEGGWVPLQTFTQHQGAVK 200
Query: 78 DLVFSS-DSRFLVS--ASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSG- 133
+ + S L + + D+ IR+W+V + CL + H+ V + ++P ++SG
Sbjct: 201 AVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ-VCSILWSPHYKELISGH 259
Query: 134 AFDET-VRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIW 184
F + + IW T + L H+ V ++ + DG + +++ D R+W
Sbjct: 260 GFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 311
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 215 ILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWEL 274
+L LDN++ LW+ S+G IL+ +Y ISS + G Y+ G+ + V LW++
Sbjct: 38 VLAVALDNSVYLWSASSGDILQLLQMEQPGEY-ISSVAWIKEGNYLAVGTSSAEVQLWDV 96
Query: 275 QSRKVVQKLEGHTDPVISVA 294
Q +K ++ + H+ V S++
Sbjct: 97 QQQKRLRNMTSHSARVGSLS 116
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 74/259 (28%), Positives = 121/259 (46%), Gaps = 25/259 (9%)
Query: 69 FTGHEQG-VSDLVFSSDSRFLVSASDDKTIR---LWDVPTATCLKTLIGHTNYVFCVNFN 124
+TG QG ++ + + S+ L+ D I L+ L TLIGH V ++F
Sbjct: 56 YTG--QGFLNSVCYDSEKELLLFGGKDTXINGVPLFATSGEDPLYTLIGHQGNVCSLSF- 112
Query: 125 PQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPV---TAVDFNRDGTMIVTSSYDGLC 181
Q +++SG++D+T ++W K G + L AH+ V V F+ + +T+S D
Sbjct: 113 -QDGVVISGSWDKTAKVW--KEGSLVYNLQAHNASVWDAKVVSFSEN--KFLTASADKTI 167
Query: 182 RIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGH 241
++W +KT N V + +G FI D ++L + TG +L+TY GH
Sbjct: 168 KLW--QNDKVIKTFSGIHNDVVRHLAVVDDGHFISCSN-DGLIKLVDXHTGDVLRTYEGH 224
Query: 242 TNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENI 301
+ YCI + NG IVS ED V +W ++ + Q + + SV +I
Sbjct: 225 ESFVYCIK---LLPNGD-IVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCXSNGDI 280
Query: 302 IASGALDNDRTVKIWTQEK 320
I + D V+I++QEK
Sbjct: 281 IVGSS---DNLVRIFSQEK 296
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 63/119 (52%), Gaps = 4/119 (3%)
Query: 66 LQKFTG-HEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFN 124
++ F+G H V L D F +S S+D I+L D T L+T GH ++V+C+
Sbjct: 176 IKTFSGIHNDVVRHLAVVDDGHF-ISCSNDGLIKLVDXHTGDVLRTYEGHESFVYCIKLL 234
Query: 125 PQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRI 183
P + IVS D TVRIW + G +V+ + + +VD +G +IV SS D L RI
Sbjct: 235 PNGD-IVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCXSNGDIIVGSS-DNLVRI 291
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/249 (25%), Positives = 113/249 (45%), Gaps = 17/249 (6%)
Query: 76 VSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAF 135
V+ + +S D FL + + ++DV + T L+T+ GH V C+++N +++ SG+
Sbjct: 137 VASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWN--RHVLSSGSR 194
Query: 136 DETVRIWDVKTGK-CLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKT 194
+ DV+ + L HS V + + DG + + D + +IWDA + K
Sbjct: 195 SGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSS-IPKF 253
Query: 195 LIDDENPPVSFVKFSPNGKFILV---GTLDNTLRLWNYSTGKILKTYTGHTNSKYCISST 251
+ N V V + P +L GT+D + WN +TG + T + I S
Sbjct: 254 TKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSP 313
Query: 252 FSVTNGKYIVS--GSEDSCVYLWELQSRKVVQKLE--GHTDPVISVASHPTENIIASGAL 307
S K I+S G D+ + +W S + ++++ H V+ A P I+++ A
Sbjct: 314 HS----KEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAA- 368
Query: 308 DNDRTVKIW 316
+D +K W
Sbjct: 369 -SDENLKFW 376
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 73/173 (42%), Gaps = 5/173 (2%)
Query: 69 FTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNP-QS 127
GH V L + SD L S +D +++WD ++ T H V V + P QS
Sbjct: 213 LQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQS 272
Query: 128 NMIVSGA--FDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSY-DGLCRIW 184
N++ +G D+ + W+ TG + + A S + + ++ T + D IW
Sbjct: 273 NLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIW 332
Query: 185 D-ASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILK 236
+S+G + I + V + SP+G+ + D L+ W G +K
Sbjct: 333 SYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVK 385
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 65/135 (48%), Gaps = 8/135 (5%)
Query: 183 IWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHT 242
+W+A +G DE+ V+ VK+S +G F+ VG + + +++ + L+T GH
Sbjct: 117 VWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQ 176
Query: 243 NSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQ-SRKVVQKLEGHTDPVISVASHPTENI 301
C+S N + SGS ++ +++ + + L+GH+ V +A
Sbjct: 177 ARVGCLS-----WNRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQ 231
Query: 302 IASGALDNDRTVKIW 316
+ASG ND V+IW
Sbjct: 232 LASGG--NDNVVQIW 244
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 67.8 bits (164), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 54/221 (24%), Positives = 93/221 (42%), Gaps = 60/221 (27%)
Query: 115 TNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVT 174
TN V C+ ++ N IV+G + +R+W+ KTG L VL H P+ +V +N+DGT I++
Sbjct: 108 TNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIIS 166
Query: 175 SSYDGLCRIWDASTGHCMKTL---------------------------IDDE-------- 199
+ + +W+ +G M+ +DD+
Sbjct: 167 MDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPK 226
Query: 200 --------------------NPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYT 239
+ P+S ++F+ K +L + D TLR+W+ G +
Sbjct: 227 GAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFY 286
Query: 240 GHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVV 280
GH+ S I S V + K ++S S D V LW L+ ++
Sbjct: 287 GHSQS---IVSASWVGDDK-VISCSMDGSVRLWSLKQNTLL 323
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 56/118 (47%), Gaps = 1/118 (0%)
Query: 68 KFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQS 127
K GH +S L F+ ++ L+SASDD T+R+W GH+ + ++
Sbjct: 242 KLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASW-VGD 300
Query: 128 NMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWD 185
+ ++S + D +VR+W +K L + P+ A ++DG + DG ++D
Sbjct: 301 DKVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYD 358
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 49/230 (21%), Positives = 87/230 (37%), Gaps = 26/230 (11%)
Query: 14 TLTQTLNGHLRAISSVKFSHDGRLLASSSADKXXXXXXXXXXXXXXXXXXXXLQKFTGHE 73
L LN H I SVK++ DG + S + +Q F E
Sbjct: 140 ALLNVLNFHRAPIVSVKWNKDGTHIISMDVEN--------VTILWNVISGTVMQHFELKE 191
Query: 74 QGVS---------------DLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYV 118
G S D+ + D +F++ I ++ + T LIGH +
Sbjct: 192 TGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGP-KGAIFVYQITEKTPTGKLIGHHGPI 250
Query: 119 FCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYD 178
+ FN + +++S + D T+RIW G HS + + + D +++ S D
Sbjct: 251 SVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGD-DKVISCSMD 309
Query: 179 GLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWN 228
G R+W + I D P+ + S +G+ V +D + +++
Sbjct: 310 GSVRLWSLKQNTLLALSIVD-GVPIFAGRISQDGQKYAVAFMDGQVNVYD 358
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 50/132 (37%), Gaps = 9/132 (6%)
Query: 14 TLTQTLNGHLRAISSVKFSHDGRLLASSSADKXXXXXXXXXXXXXXXXXXXXLQKFTGHE 73
T T L GH IS ++F+ +LL S+S D F GH
Sbjct: 238 TPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNC--------FYGHS 289
Query: 74 QGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSG 133
Q + + D + ++S S D ++RLW + T L I +F +
Sbjct: 290 QSIVSASWVGDDK-VISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVA 348
Query: 134 AFDETVRIWDVK 145
D V ++D+K
Sbjct: 349 FMDGQVNVYDLK 360
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 67.8 bits (164), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 84/164 (51%), Gaps = 8/164 (4%)
Query: 71 GHEQGVSDLVFSSDSRFLVSASDDKTIRLW--DVPTATCLKTLIGHTNYVFCVNFNPQSN 128
GH++ V + +S +L SAS D T +W + C+ TL GH N V V + P N
Sbjct: 59 GHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGN 118
Query: 129 MIVSGAFDETVRIWDVKTG---KCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWD 185
++ + + D++V +W+V +C+ VL +H+ V V ++ ++ ++SYD +++
Sbjct: 119 LLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYR 178
Query: 186 ASTGH--CMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLW 227
C TL E+ V + F P+G+ + + D T+R+W
Sbjct: 179 EEEDDWVCCATLEGHES-TVWSLAFDPSGQRLASCSDDRTVRIW 221
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 84/180 (46%), Gaps = 13/180 (7%)
Query: 150 LKVLPAHSDP-VTAVDFNRDGTMIVTSSYDGLCRIW--DASTGHCMKTLIDDENPPVSFV 206
L +PAH D + +N GT++ + D RIW + + C L + V V
Sbjct: 8 LGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKV 67
Query: 207 KFSPNGKFILVGTLDNTLRLW--NYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGS 264
+SP G ++ + D T +W N + + T GH N + S +G + + S
Sbjct: 68 AWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENE---VKSVAWAPSGNLLATCS 124
Query: 265 EDSCVYLWELQSR---KVVQKLEGHTDPVISVASHPTENIIASGALDNDRTVKIWTQEKE 321
D V++WE+ + V L HT V V HP++ ++AS + D+ TVK++ +E++
Sbjct: 125 RDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDD--TVKLYREEED 182
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 72/170 (42%), Gaps = 11/170 (6%)
Query: 20 NGHLRAISSVKFSHDGRLLASSSADKXXXXXXXXXXXXXXXXXXXXLQKFTGHEQGVSDL 79
GH R + V +S G LAS+S D + GHE V +
Sbjct: 58 EGHQRTVRKVAWSPCGNYLASASFD------ATTCIWKKNQDDFECVTTLEGHENEVKSV 111
Query: 80 VFSSDSRFLVSASDDKTIRLWDVPTA---TCLKTLIGHTNYVFCVNFNPQSNMIVSGAFD 136
++ L + S DK++ +W+V C+ L HT V V ++P ++ S ++D
Sbjct: 112 AWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYD 171
Query: 137 ETVRIWDVKTGK--CLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIW 184
+TV+++ + C L H V ++ F+ G + + S D RIW
Sbjct: 172 DTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIW 221
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 90/209 (43%), Gaps = 22/209 (10%)
Query: 123 FNPQSNMIVSGAFDETVRIWDVKTGK--CLKVL-PAHSDPVTAVDFNRDGTMIVTSSYDG 179
+NP ++ S D +RIW + C VL H V V ++ G + ++S+D
Sbjct: 24 WNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDA 83
Query: 180 LCRIWDASTG--HCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLW------NYST 231
IW + C+ TL EN V V ++P+G + + D ++ +W Y
Sbjct: 84 TTCIWKKNQDDFECVTTLEGHEN-EVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYEC 142
Query: 232 GKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVV--QKLEGHTDP 289
+L ++T + + + + S S D V L+ + V LEGH
Sbjct: 143 VSVLNSHTQD------VKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHEST 196
Query: 290 VISVASHPTENIIASGALDNDRTVKIWTQ 318
V S+A P+ +AS +DRTV+IW Q
Sbjct: 197 VWSLAFDPSGQRLAS--CSDDRTVRIWRQ 223
Score = 57.8 bits (138), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 57/132 (43%), Gaps = 7/132 (5%)
Query: 13 YTLTQTLNGHLRAISSVKFSHDGRLLASSSADKXXXXXXXXXXXXXXXXXXXXLQKFTGH 72
+ TL GH + SV ++ G LLA+ S DK + H
Sbjct: 95 FECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYEC-----VSVLNSH 149
Query: 73 EQGVSDLVFSSDSRFLVSASDDKTIRLW--DVPTATCLKTLIGHTNYVFCVNFNPQSNMI 130
Q V +V+ L SAS D T++L+ + C TL GH + V+ + F+P +
Sbjct: 150 TQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRL 209
Query: 131 VSGAFDETVRIW 142
S + D TVRIW
Sbjct: 210 ASCSDDRTVRIW 221
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/198 (21%), Positives = 72/198 (36%), Gaps = 32/198 (16%)
Query: 13 YTLTQTLNGHLRAISSVKFSHDGRLLASSSADKXXXXXXXXXXXXXXXXXXXXLQKFTGH 72
Y LN H + + V + LLAS+S D GH
Sbjct: 140 YECVSVLNSHTQDVKHVVWHPSQELLASASYDD------TVKLYREEEDDWVCCATLEGH 193
Query: 73 EQGVSDLVFSSDSRFLVSASDDKTIRLWDV---------------PTATCLKTLIG-HTN 116
E V L F + L S SDD+T+R+W P+ C+ TL G H+
Sbjct: 194 ESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSR 253
Query: 117 YVFCVNFNPQSNMIVSGAFDETVRIWDVKTGK---------CLKVLPAHSDPVTAVDFN- 166
++ + + + + + D+ +R++ + AHS V V +N
Sbjct: 254 TIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNP 313
Query: 167 RDGTMIVTSSYDGLCRIW 184
++ ++ + S DG W
Sbjct: 314 KEPGLLASCSDDGEVAFW 331
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 66/130 (50%), Gaps = 11/130 (8%)
Query: 71 GHEQGVSDLVFSS-DSRFLVSASDDKTIRLWDVPTATCLK-------TLIGHTNYVFCVN 122
GH V D+ + + + S S+D T+ +W++P + TL GHT V V
Sbjct: 79 GHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVA 138
Query: 123 FNPQS-NMIVSGAFDETVRIWDVKTGKCLKVLPA--HSDPVTAVDFNRDGTMIVTSSYDG 179
++P + N+++S D + +WDV TG + L H D + +VD++RDG +I TS D
Sbjct: 139 WHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDK 198
Query: 180 LCRIWDASTG 189
R+ + G
Sbjct: 199 RVRVIEPRKG 208
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 55/122 (45%), Gaps = 17/122 (13%)
Query: 203 VSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVS 262
++ + + G LV L T R+ K + GHT I+ + N I S
Sbjct: 47 MALIXEASGGGAFLVLPLGKTGRV-----DKNVPLVXGHTAPVLDIA--WXPHNDNVIAS 99
Query: 263 GSEDSCVYLWE-------LQSRKVVQKLEGHTDPVISVASHPT-ENIIASGALDNDRTVK 314
GSED V +WE L R+ V LEGHT V VA HPT +N++ S DN +
Sbjct: 100 GSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGXDN--VIL 157
Query: 315 IW 316
+W
Sbjct: 158 VW 159
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 66/130 (50%), Gaps = 11/130 (8%)
Query: 71 GHEQGVSDLVFSS-DSRFLVSASDDKTIRLWDVPTATCLK-------TLIGHTNYVFCVN 122
GH V D+ + + + S S+D T+ +W++P + TL GHT V V
Sbjct: 79 GHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVA 138
Query: 123 FNPQS-NMIVSGAFDETVRIWDVKTGKCLKVLPA--HSDPVTAVDFNRDGTMIVTSSYDG 179
++P + N+++S D + +WDV TG + L H D + +VD++RDG +I TS D
Sbjct: 139 WHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDK 198
Query: 180 LCRIWDASTG 189
R+ + G
Sbjct: 199 RVRVIEPRKG 208
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 47/97 (48%), Gaps = 15/97 (15%)
Query: 231 TGKILKTYT---GHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWE-------LQSRKVV 280
TG++ K GHT I+ + N I SGSED V +WE L R+ V
Sbjct: 67 TGRVDKNVPLVCGHTAPVLDIA--WCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPV 124
Query: 281 QKLEGHTDPVISVASHPT-ENIIASGALDNDRTVKIW 316
LEGHT V VA HPT +N++ S DN + +W
Sbjct: 125 ITLEGHTKRVGIVAWHPTAQNVLLSAGCDN--VILVW 159
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 96/211 (45%), Gaps = 21/211 (9%)
Query: 81 FSSDSRFLVSASDDKTIRL----WDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFD 136
F L + S D+ I+L +D T + H + V + P ++++ +G+FD
Sbjct: 20 FDFSQGILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFD 79
Query: 137 ETVRIWDVKTGK-------CLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTG 189
TV IW + L ++ H + V V ++ DG + T S D IW+
Sbjct: 80 STVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDES 139
Query: 190 ----HCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLW-NYSTG-KILKTYTGHTN 243
C+ +++ + + V V + P+ + + D+T+R+W +Y + + GH
Sbjct: 140 GEEYECI-SVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEG 198
Query: 244 SKYCISSTFSVTNGKY-IVSGSEDSCVYLWE 273
+ + SS F T G + + SGS+DS V +W+
Sbjct: 199 TVW--SSDFDKTEGVFRLCSGSDDSTVRVWK 227
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 63/245 (25%), Positives = 102/245 (41%), Gaps = 27/245 (11%)
Query: 2 SSDQSLESFRPYTLTQTLNGHLRAISSVKFSHDGRLLASSSADKXXXXXXXXXXXXXXXX 61
S+D++ E L + GH + V +S+DG LA+ S DK
Sbjct: 90 SADRTFE----MDLLAIIEGHENEVKGVAWSNDGYYLATCSRDK-SVWIWETDESGEEYE 144
Query: 62 XXXXLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWD--VPTATCLKTLIGHTNYVF 119
LQ+ H Q V +++ L S+S D T+R+W C+ L GH V+
Sbjct: 145 CISVLQE---HSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVW 201
Query: 120 CVNFNPQSNM--IVSGAFDETVRIW--------DVKTGKCLKVLP-AHSDPVTAVDFNRD 168
+F+ + + SG+ D TVR+W D + C +LP H V V + +
Sbjct: 202 SSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFN 261
Query: 169 GTMIVTSSYDGLCRIWDASTGHC---MKTLIDDENPPVSFVKF-SPNGKFILV-GTLDNT 223
G +I + DG+ +++ G K + ++ VK+ NGK IL G D
Sbjct: 262 G-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGI 320
Query: 224 LRLWN 228
+ W+
Sbjct: 321 VNFWS 325
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 75/174 (43%), Gaps = 14/174 (8%)
Query: 70 TGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTAT-------CLKTLIGHTNYVFCVN 122
T H++ + + + + L + S D T+ +W + L + GH N V V
Sbjct: 55 TAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVA 114
Query: 123 FNPQSNMIVSGAFDETVRIWDVKTG----KCLKVLPAHSDPVTAVDFNRDGTMIVTSSYD 178
++ + + + D++V IW+ +C+ VL HS V V ++ ++ +SSYD
Sbjct: 115 WSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYD 174
Query: 179 GLCRIWD--ASTGHCMKTLIDDENPPVSFVKFSPNGKFILV-GTLDNTLRLWNY 229
RIW C+ L E S G F L G+ D+T+R+W Y
Sbjct: 175 DTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKY 228
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 45/227 (19%), Positives = 86/227 (37%), Gaps = 67/227 (29%)
Query: 150 LKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLID--DE---NPPVS 204
+K L + + + + DF++ ++ T S D ++ S + TLID DE +
Sbjct: 7 IKSLKLYKEKIWSFDFSQ--GILATGSTDRKIKL--VSVKYDDFTLIDVLDETAHKKAIR 62
Query: 205 FVKFSPNGKFILVGTLDNTLRLWNYSTGK-------ILKTYTGHTNSKYCISSTFSVTNG 257
V + P+ + G+ D+T+ +W +L GH N ++ + +G
Sbjct: 63 SVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWS---NDG 119
Query: 258 KYIVSGSEDSCVYLWEL----QSRKVVQKLEGHTDPVISVASHPTENIIASGALDN---- 309
Y+ + S D V++WE + + + L+ H+ V V HP+E ++AS + D+
Sbjct: 120 YYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRI 179
Query: 310 ----------------------------------------DRTVKIW 316
D TV++W
Sbjct: 180 WKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVW 226
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 81/188 (43%), Gaps = 26/188 (13%)
Query: 113 GHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMI 172
H + + + F P ++S + D ++IW VK G + L H VT + G +
Sbjct: 134 AHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNV 193
Query: 173 VTSSYDGLCRIWDASTGHCMKTLIDDENP-----------------------PVSFVKFS 209
+++S DG R+W+ TG + T ENP + ++F
Sbjct: 194 LSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFG 253
Query: 210 PNGKFILVGTLDNTLRLWN-YSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSC 268
GK+++ G + + + N +S + ++ + T S C S T N YI +G E+
Sbjct: 254 TYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCS--CNSLTVDGNNANYIYAGYENGM 311
Query: 269 VYLWELQS 276
+ W+L+S
Sbjct: 312 LAQWDLRS 319
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 55/125 (44%), Gaps = 1/125 (0%)
Query: 126 QSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWD 185
Q + G + +++ D ++ AH +T + F G +++SS D +IW
Sbjct: 105 QMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWS 164
Query: 186 ASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSK 245
G +TLI V+ + G+ +L +LD T+RLW TG + T+ N
Sbjct: 165 VKDGSNPRTLI-GHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPH 223
Query: 246 YCISS 250
++S
Sbjct: 224 DGVNS 228
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/234 (21%), Positives = 91/234 (38%), Gaps = 38/234 (16%)
Query: 21 GHLRAISSVKFSHDGRLLASSSADKXXXXXXXXXXXXXXXXXXXXLQKFTGHEQGVSDLV 80
H+ I+ +KF G L SSS D + GH V+D+
Sbjct: 134 AHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNP--------RTLIGHRATVTDIA 185
Query: 81 FSSDSRFLVSASDDKTIRLWDVPTATCLKT----------------LIGHTNYVFCVNFN 124
R ++SAS D TIRLW+ T T + T +G + ++ +
Sbjct: 186 IIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTS 245
Query: 125 PQSNM--------IVSGAFDETVRIWDVKTGKCLKVLPAH---SDPVTAVDFNRDGTMIV 173
++N+ +++G + + +V + + LP+ S VD N + I
Sbjct: 246 KKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGN-NANYIY 304
Query: 174 TSSYDGLCRIWDASTGHC-MKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRL 226
+G+ WD + C + + +E P++ V F+ F+ G D +++L
Sbjct: 305 AGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYFAAGALFVSSG-FDTSIKL 357
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 81/188 (43%), Gaps = 26/188 (13%)
Query: 113 GHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMI 172
H + + + F P ++S + D ++IW VK G + L H VT + G +
Sbjct: 137 AHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNV 196
Query: 173 VTSSYDGLCRIWDASTGHCMKTLIDDENP-----------------------PVSFVKFS 209
+++S DG R+W+ TG + T ENP + ++F
Sbjct: 197 LSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFG 256
Query: 210 PNGKFILVGTLDNTLRLWN-YSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSC 268
GK+++ G + + + N +S + ++ + T S C S T N YI +G E+
Sbjct: 257 TYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCS--CNSLTVDGNNANYIYAGYENGM 314
Query: 269 VYLWELQS 276
+ W+L+S
Sbjct: 315 LAQWDLRS 322
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 55/125 (44%), Gaps = 1/125 (0%)
Query: 126 QSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWD 185
Q + G + +++ D ++ AH +T + F G +++SS D +IW
Sbjct: 108 QMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWS 167
Query: 186 ASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSK 245
G +TLI V+ + G+ +L +LD T+RLW TG + T+ N
Sbjct: 168 VKDGSNPRTLI-GHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPH 226
Query: 246 YCISS 250
++S
Sbjct: 227 DGVNS 231
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/234 (22%), Positives = 85/234 (36%), Gaps = 38/234 (16%)
Query: 21 GHLRAISSVKFSHDGRLLASSSADKXXXXXXXXXXXXXXXXXXXXLQKFTGHEQGVSDLV 80
H+ I+ +KF G L SSS D + GH V+D+
Sbjct: 137 AHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNP--------RTLIGHRATVTDIA 188
Query: 81 FSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVN------------------ 122
R ++SAS D TIRLW+ T T + T N VN
Sbjct: 189 IIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTS 248
Query: 123 ------FNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAH---SDPVTAVDFNRDGTMIV 173
F +++G + + +V + + LP+ S VD N + I
Sbjct: 249 KKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGN-NANYIY 307
Query: 174 TSSYDGLCRIWDASTGHC-MKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRL 226
+G+ WD + C + + +E P++ V F+ F+ G D +++L
Sbjct: 308 AGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYFAAGALFVSSG-FDTSIKL 360
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 97/226 (42%), Gaps = 31/226 (13%)
Query: 69 FTGHEQGVSDLVFSSDSRF-LVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQS 127
TG + ++ + F F ++S SDD T+ +++ P T HT +V V +NP
Sbjct: 143 LTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDG 202
Query: 128 NMIVSGAFDETVRIWDVKTGKCLKVLP-------AHSDPVTAVDFNRDGTMIVTSSYDGL 180
++ S D T+ +++ G V AHS V + ++ DGT I ++S D
Sbjct: 203 SLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKT 262
Query: 181 CRIWDASTGHCMKTL-----IDDENPPV-----SFVKFSPNGKFILVGTLDNTLRLWNYS 230
+IW+ +T KT+ I+D+ + + V S NG V N
Sbjct: 263 IKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFV----------NPE 312
Query: 231 TGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQS 276
G I + GH + +SS+ +GK + S + + W++ +
Sbjct: 313 LGSIDQVRYGHNKAITALSSS---ADGKTLFSADAEGHINSWDIST 355
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/230 (24%), Positives = 99/230 (43%), Gaps = 9/230 (3%)
Query: 2 SSDQSLESFR--PYTLTQTLNGHLRAISSVKFSHDGRLLASSSADKXXXXXXXXXXXXXX 59
S D ++ F P+ T H + + SV+++ DG L AS+ D
Sbjct: 167 SDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTG 226
Query: 60 XXXXXXLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHT---N 116
L K H V L +S D + SAS DKTI++W+V T KT+ T +
Sbjct: 227 VFEDDSL-KNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIED 285
Query: 117 YVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSS 176
+ + Q+ +VS + + + + + G +V H+ +TA+ + DG + ++
Sbjct: 286 QQLGIIWTKQA--LVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSAD 343
Query: 177 YDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRL 226
+G WD STG + D ++ +K + G V + D+ L++
Sbjct: 344 AEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTV-SWDDHLKV 392
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/233 (24%), Positives = 96/233 (41%), Gaps = 22/233 (9%)
Query: 99 LWDVPTATCLKTLI--GHTNYVFCVNFNPQSNMIVSGAFDETVRIWD-VKTGKCLK-VLP 154
++ VP + T I H++ +P SG VRIWD +T LK +P
Sbjct: 41 VYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIP 100
Query: 155 AHSDPVTAVDFNRDGTMI--VTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNG 212
S PV + ++ + I V + ++ TG L ++ V F P+
Sbjct: 101 VFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQAR-AMNSVDFKPSR 159
Query: 213 KF-ILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCI-----SSTFSVTNGK---YIVSG 263
F I+ G+ DNT+ ++ K T+ HT + + S F+ T G + +G
Sbjct: 160 PFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNG 219
Query: 264 SEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRTVKIW 316
+ + ++E S K V H+ V + P IAS + D+T+KIW
Sbjct: 220 VDGTKTGVFEDDSLKNV----AHSGSVFGLTWSPDGTKIASASA--DKTIKIW 266
Score = 35.0 bits (79), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 24/123 (19%), Positives = 58/123 (47%), Gaps = 13/123 (10%)
Query: 72 HEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTN-------YVFCVNFN 124
H ++ + FS++ FLV+ + + +P + + HTN V CV+++
Sbjct: 490 HPAEITSVAFSNNGAFLVATDQSRKV----IPYSVANNFELAHTNSWTFHTAKVACVSWS 545
Query: 125 PQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVD--FNRDGTMIVTSSYDGLCR 182
P + + +G+ D +V +W++ ++ + +++V+ + T IV++ D +
Sbjct: 546 PDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIK 605
Query: 183 IWD 185
W+
Sbjct: 606 FWN 608
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 37/166 (22%), Positives = 69/166 (41%), Gaps = 20/166 (12%)
Query: 120 CVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLP-AHSDPVTAVDFNRDGTMIVTSSYD 178
CV + + G D V ++ + +V H +T+V F+ +G +V + D
Sbjct: 453 CVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVAT--D 510
Query: 179 GLCRIWDASTGHCMKTLIDD----ENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGK- 233
++ S + + + V+ V +SP+ + G+LDN++ +WN +
Sbjct: 511 QSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSD 570
Query: 234 ---ILKTYTGHTNSKYCISSTFSVT--NGKYIVSGSEDSCVYLWEL 274
I+K + +SS SV N IVS +DS + W +
Sbjct: 571 HPIIIK-------GAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV 609
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 60.8 bits (146), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 58/212 (27%), Positives = 98/212 (46%), Gaps = 28/212 (13%)
Query: 136 DETVRIWDVK--TGKCLKVLPAHSDPVTAVDFN--RDGTMIVTSSYDGLCRIWDASTGHC 191
D+T++I++V+ T K + L H PV VD+ + GT++ + SYDG IW G
Sbjct: 30 DKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRW 89
Query: 192 MKTLIDD-ENPPVSFVKFSPN--GKFILVGTLDNTLRLWNYSTGK-----ILKTYTGHTN 243
+ + + V+ V+++P+ G +LV + D + + + I+ + N
Sbjct: 90 SQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVN 149
Query: 244 SKYCISSTFS-------VTNGKYIVSGSEDSCVYLW----ELQSRKVVQKLEGHTDPVIS 292
S +T + V+G D+ V +W + Q+ + LEGH+D V
Sbjct: 150 SASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRD 209
Query: 293 VASHPT---ENIIASGALDNDRTVKIWTQEKE 321
VA PT + +AS + DRT IWTQ+ E
Sbjct: 210 VAWSPTVLLRSYMAS--VSQDRTCIIWTQDNE 239
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 96/210 (45%), Gaps = 24/210 (11%)
Query: 136 DETVRIWDVK--TGKCLKVLPAHSDPVTAVDFNRD--GTMIVTSSYDGLCRIWDASTGHC 191
D+T++I++V+ T K + L H PV VD+ GT++ + SYDG IW G
Sbjct: 30 DKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVXIWKEENGRW 89
Query: 192 MKTLIDD-ENPPVSFVKFSPN--GKFILVGTLDNTLRLWNYSTGK-----ILKTYTGHTN 243
+ + + V+ V+++P+ G +LV + D + + + I+ + N
Sbjct: 90 SQIAVHAVHSASVNSVQWAPHEYGPXLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVN 149
Query: 244 SKYCISSTFS-------VTNGKYIVSGSEDSCVYLW----ELQSRKVVQKLEGHTDPVIS 292
S +T + V+G D+ V +W + Q+ + LEGH+D V
Sbjct: 150 SASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRD 209
Query: 293 VASHPTENIIASGA-LDNDRTVKIWTQEKE 321
VA PT + + A + DRT IWTQ+ E
Sbjct: 210 VAWSPTVLLRSYXASVSQDRTCIIWTQDNE 239
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 58/265 (21%), Positives = 113/265 (42%), Gaps = 25/265 (9%)
Query: 68 KFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQS 127
K TGHE+ ++ + ++ + L S S D + +W L TL GHT ++ ++ + +
Sbjct: 27 KLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFT 86
Query: 128 NMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVT-----SSYDGLCR 182
V+G+ D ++++WDV G+C+ + PV V+F+ G + G
Sbjct: 87 KYCVTGSADYSIKLWDVSNGQCVATWKS-PVPVKRVEFSPCGNYFLAILDNVMKNPGSIN 145
Query: 183 IWDASTGHCMKTLIDDENPPV------------SFVKFSPNGKFILVGTLDNTLRLWNYS 230
I++ L P+ + +S GK+I+ G D + ++ S
Sbjct: 146 IYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVS 205
Query: 231 TG-KILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTD- 288
+ + + H S IS + Y ++ S D+ +L ++ + +V++K E TD
Sbjct: 206 NNYEYVDSIDLHEKS---ISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE--TDC 260
Query: 289 PVISVASHPTENIIASGALDNDRTV 313
P+ + P + I G + V
Sbjct: 261 PLNTAVITPLKEFIILGGGQEAKDV 285
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 73/324 (22%), Positives = 127/324 (39%), Gaps = 49/324 (15%)
Query: 19 LNGHLRAISSVKFSHDGRLLASSSADKXXXXXXXXXXXXXXXXXXXXLQKFTGHEQGVSD 78
L GH R ++ VK++ +G LL S S D L GH +
Sbjct: 28 LTGHERPLTQVKYNKEGDLLFSCSKD--------SSASVWYSLNGERLGTLDGHTGTIWS 79
Query: 79 LVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDE- 137
+ +++ V+ S D +I+LWDV C+ T V V F+P N ++ D
Sbjct: 80 IDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWKSPVP-VKRVEFSPCGNYFLA-ILDNV 137
Query: 138 -----TVRIWDVKTGKCLKVL------PAHS-------DPVTAVDFNRDGTMIVTSSYDG 179
++ I++++ L P H D T ++ G I+ DG
Sbjct: 138 MKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDG 197
Query: 180 LCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYT 239
+D S + ID +S ++FSP+ + + + D L + ST ++LK Y
Sbjct: 198 KISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE 257
Query: 240 GHTNSKYCISSTFSVTNGK--YIVSGSEDS------CVYLWELQSR-------KVVQKLE 284
C +T +T K I+ G +++ + ++R + + +++
Sbjct: 258 TD-----CPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQ 312
Query: 285 GHTDPVISVASHPTENIIASGALD 308
GH P+ +VA P ASG D
Sbjct: 313 GHFGPLNTVAISPQGTSYASGGED 336
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 68/118 (57%), Gaps = 9/118 (7%)
Query: 118 VFCVNFNPQS---NMIVSGAFDETVRIWDVK-TGKCL-KVLPAHSDPVTAVDFNRDGTMI 172
+ C++F+P + N +++G++ VR W+V+ +G+ + K H+ PV V ++ DG+ +
Sbjct: 42 IGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKV 101
Query: 173 VTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKF--SPNGKFILVGTLDNTLRLWN 228
T+S D ++WD S+ ++ I + PV + + +PN ++ G+ D TL+ W+
Sbjct: 102 FTASCDKTAKMWDLSSNQAIQ--IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWD 157
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 48/84 (57%), Gaps = 3/84 (3%)
Query: 72 HEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNF--NPQSNM 129
H V D+ +S D + +AS DKT ++WD+ + ++ + H V +++ P +
Sbjct: 85 HTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSC 143
Query: 130 IVSGAFDETVRIWDVKTGKCLKVL 153
+++G++D+T++ WD ++ + VL
Sbjct: 144 VMTGSWDKTLKFWDTRSSNPMMVL 167
Score = 31.6 bits (70), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 46/91 (50%), Gaps = 4/91 (4%)
Query: 228 NYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQ--SRKVVQKLEG 285
N++ K ++ + +S C+S + G ++++GS + V WE+Q + + + +
Sbjct: 25 NHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQM 84
Query: 286 HTDPVISVASHPTENIIASGALDNDRTVKIW 316
HT PV+ V + + + + D+T K+W
Sbjct: 85 HTGPVLDVCWSDDGSKVFTASC--DKTAKMW 113
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/164 (17%), Positives = 63/164 (38%), Gaps = 21/164 (12%)
Query: 122 NFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLC 181
N NP ++ V+ + D+++ CL P G ++ S+
Sbjct: 25 NHNPMKDIEVTSSPDDSI--------GCLSFSPP----------TLPGNFLIAGSWANDV 66
Query: 182 RIWDAS-TGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTG 240
R W+ +G + PV V +S +G + + D T ++W+ S+ + ++
Sbjct: 67 RCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ--IA 124
Query: 241 HTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLE 284
++ N +++GS D + W+ +S + L+
Sbjct: 125 QHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQ 168
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 57.8 bits (138), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 69/273 (25%), Positives = 115/273 (42%), Gaps = 62/273 (22%)
Query: 71 GHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTAT--CLKTLIGHTNYVFCVNF-NPQ- 126
H + + D V + L + S DKTI++++V T + TL GH V+ V++ +P+
Sbjct: 7 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKF 66
Query: 127 SNMIVSGAFDETVRIWDVKTGKC--LKVLPAHSDPVTAVDF--NRDGTMIVTSSYDGLCR 182
++ S ++D V IW + G+ + V HS V +V + + G +++ +S DG
Sbjct: 67 GTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDG--- 123
Query: 183 IWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHT 242
VS V+F NG ++ I+ +
Sbjct: 124 -------------------KVSVVEFKENGT----------------TSPIIIDAHAIGV 148
Query: 243 NSKYCISSTFS-------VTNGKYIVSGSEDSCVYLW----ELQSRKVVQKLEGHTDPVI 291
NS +T + V+G D+ V +W + Q+ + LEGH+D V
Sbjct: 149 NSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVR 208
Query: 292 SVASHPT---ENIIASGALDNDRTVKIWTQEKE 321
VA PT + +AS + DRT IWTQ+ E
Sbjct: 209 DVAWSPTVLLRSYLAS--VSQDRTCIIWTQDNE 239
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 69/273 (25%), Positives = 115/273 (42%), Gaps = 62/273 (22%)
Query: 71 GHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTAT--CLKTLIGHTNYVFCVNF-NPQ- 126
H + + D V + L + S DKTI++++V T + TL GH V+ V++ +P+
Sbjct: 9 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKF 68
Query: 127 SNMIVSGAFDETVRIWDVKTGKC--LKVLPAHSDPVTAVDF--NRDGTMIVTSSYDGLCR 182
++ S ++D V IW + G+ + V HS V +V + + G +++ +S DG
Sbjct: 69 GTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDG--- 125
Query: 183 IWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHT 242
VS V+F NG ++ I+ +
Sbjct: 126 -------------------KVSVVEFKENGT----------------TSPIIIDAHAIGV 150
Query: 243 NSKYCISSTFS-------VTNGKYIVSGSEDSCVYLW----ELQSRKVVQKLEGHTDPVI 291
NS +T + V+G D+ V +W + Q+ + LEGH+D V
Sbjct: 151 NSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVR 210
Query: 292 SVASHPT---ENIIASGALDNDRTVKIWTQEKE 321
VA PT + +AS + DRT IWTQ+ E
Sbjct: 211 DVAWSPTVLLRSYLAS--VSQDRTCIIWTQDNE 241
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/192 (21%), Positives = 80/192 (41%), Gaps = 8/192 (4%)
Query: 84 DSRFLVSASDDKTIRLWDV--PTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRI 141
D L+ + T+ +WD+ PT L + + +P S + S D + +
Sbjct: 108 DGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAV 167
Query: 142 WDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENP 201
WD+ ++ H+D + +D + DGT + T D R WD G ++ D
Sbjct: 168 WDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQ--HDFTS 225
Query: 202 PVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIV 261
+ + + P G+++ VG + + + + + Y H + +S F+ GK+ V
Sbjct: 226 QIFSLGYCPTGEWLAVGMESSNVEVLHVNKP---DKYQLHLHESCVLSLKFAYC-GKWFV 281
Query: 262 SGSEDSCVYLWE 273
S +D+ + W
Sbjct: 282 STGKDNLLNAWR 293
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 84/197 (42%), Gaps = 9/197 (4%)
Query: 79 LVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDET 138
L S DS+ S D I +WD+ T ++ GHT+ C++ + + +G D T
Sbjct: 147 LAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNT 206
Query: 139 VRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDD 198
VR WD++ G+ L+ S + ++ + G + + + K +
Sbjct: 207 VRSWDLREGRQLQQHDFTSQ-IFSLGYCPTGEWLAVGMESSNVEVLHVNKPD--KYQLHL 263
Query: 199 ENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGK-ILKTYTGHTNSKYCISSTFSVTNG 257
V +KF+ GK+ + DN L W G I ++ S +S SV +
Sbjct: 264 HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS----KESSSVLSCDISVDD- 318
Query: 258 KYIVSGSEDSCVYLWEL 274
KYIV+GS D ++E+
Sbjct: 319 KYIVTGSGDKKATVYEV 335
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 63/158 (39%), Gaps = 8/158 (5%)
Query: 66 LQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGH--TNYVFCVNF 123
+++F GH G S + S+D L + D T+R WD+ + L H T+ +F + +
Sbjct: 176 VRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREG---RQLQQHDFTSQIFSLGY 232
Query: 124 NPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRI 183
P + G V + V + L H V ++ F G V++ D L
Sbjct: 233 CPTGEWLAVGMESSNVEVLHVNKPDKYQ-LHLHESCVLSLKFAYCGKWFVSTGKDNLLNA 291
Query: 184 WDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLD 221
W G E+ V S + K+I+ G+ D
Sbjct: 292 WRTPYG--ASIFQSKESSSVLSCDISVDDKYIVTGSGD 327
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/174 (19%), Positives = 69/174 (39%), Gaps = 9/174 (5%)
Query: 72 HEQGVSDLVFSSDSRFLVSASDDKTIRLWDV-----PTATCLKTLIGHTNYVFCVNFNPQ 126
H + V + S+ +R + + +++WD+ + + NY+ P
Sbjct: 50 HGEVVCAVTISNPTRHVYTGGK-GCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPD 108
Query: 127 SNMIVSGAFDETVRIWDVK--TGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIW 184
++ G T+ IWD+ T + L + + A+ + D + + DG +W
Sbjct: 109 GCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVW 168
Query: 185 DASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTY 238
D ++ S + S +G + G LDNT+R W+ G+ L+ +
Sbjct: 169 DLHNQTLVRQF-QGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQH 221
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 69/273 (25%), Positives = 115/273 (42%), Gaps = 62/273 (22%)
Query: 71 GHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTAT--CLKTLIGHTNYVFCVNF-NPQ- 126
H + + D V + L + S DKTI++++V T + TL GH V+ V++ +P+
Sbjct: 7 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKF 66
Query: 127 SNMIVSGAFDETVRIWDVKTGKC--LKVLPAHSDPVTAVDF--NRDGTMIVTSSYDGLCR 182
++ S ++D V IW + G+ + V HS V +V + + G +++ +S DG
Sbjct: 67 GTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDG--- 123
Query: 183 IWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHT 242
VS V+F NG ++ I+ +
Sbjct: 124 -------------------KVSVVEFKENGT----------------TSPIIIDAHAIGV 148
Query: 243 NSKYCISSTFS-------VTNGKYIVSGSEDSCVYLWEL----QSRKVVQKLEGHTDPVI 291
NS +T + V+G D+ V +W+ Q+ + LEGH+D V
Sbjct: 149 NSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVR 208
Query: 292 SVASHPT---ENIIASGALDNDRTVKIWTQEKE 321
VA PT + +AS + DRT IWTQ+ E
Sbjct: 209 DVAWSPTVLLRSYLAS--VSQDRTCIIWTQDNE 239
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/207 (24%), Positives = 88/207 (42%), Gaps = 44/207 (21%)
Query: 97 IRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGA-FDETVRIWDVKTGK-CLKVL- 153
++L D+ + +C L GH + V+++P+ + I++ A D V++WDV+ CL L
Sbjct: 168 VQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLD 227
Query: 154 --------------PAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDE 199
AH+ V + F DG ++T D R+W++S G E
Sbjct: 228 QHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNG---------E 278
Query: 200 NPPVSFVKFSPNGK--------------FILVGTLDNTLRLWNYSTGKILKTYTGHTNSK 245
N V++ K N K F+ V +T+ ++ +G+ + GH +
Sbjct: 279 NTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFV-PYGSTIAVYTVYSGEQITMLKGHYKTV 337
Query: 246 YCISSTFSVTNGKYIVSGSEDSCVYLW 272
C F +N + + SGS D + W
Sbjct: 338 DCC--VFQ-SNFQELYSGSRDCNILAW 361
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 69/314 (21%), Positives = 115/314 (36%), Gaps = 77/314 (24%)
Query: 72 HEQGVSDL-VFSSDSRFLVSASDDKTIRLWDVPTA------TCLKTL-IG------HTNY 117
H G++ L + + R+++S D I L+D+ + TC IG H
Sbjct: 42 HGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYS 101
Query: 118 VFCVNFNPQ-SNMIVSGAFDETVRIW---------------------------------- 142
V V + P + M S +FD+T+++W
Sbjct: 102 VETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAV 161
Query: 143 ----------DVKTGKCLKVLPAHSDPVTAVDFN-RDGTMIVTSSYDGLCRIWDASTGH- 190
D+K+G C +L H + AV ++ R ++ T+S D ++WD
Sbjct: 162 GTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASG 221
Query: 191 CMKTLIDD--------------ENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILK 236
C+ TL N V+ + F+ +G +L DN +RLWN S G+
Sbjct: 222 CLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTL 281
Query: 237 TYTGH--TNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVA 294
G NSK + T S V S + ++ + S + + L+GH V
Sbjct: 282 VNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCV 341
Query: 295 SHPTENIIASGALD 308
+ SG+ D
Sbjct: 342 FQSNFQELYSGSRD 355
Score = 31.2 bits (69), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 48/123 (39%), Gaps = 15/123 (12%)
Query: 70 TGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNM 129
T H V+ L F+SD L++ D +RLW+ TL+ + C N
Sbjct: 242 TAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGE--NTLVNYGK--VCNNSKKGLKF 297
Query: 130 IVSGA---------FDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGL 180
VS + T+ ++ V +G+ + +L H V F + + + S D
Sbjct: 298 TVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRD-- 355
Query: 181 CRI 183
C I
Sbjct: 356 CNI 358
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 53/220 (24%), Positives = 95/220 (43%), Gaps = 23/220 (10%)
Query: 66 LQKFTGHEQGVSDLVFSSDSRFL--VSASDDKTIRLWDVPT---ATCLKTLIGHTNYVFC 120
L + +GH Q + + SR + ++ DD ++ + P + +T ++V
Sbjct: 153 LGEVSGHSQRI-NACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRD 211
Query: 121 VNFNPQSN-MIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNR---DGTMIVTSS 176
V F+P S +++ D + +D K+G+ LK + +PV F D T
Sbjct: 212 VEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVG 271
Query: 177 YDGLCRIWDASTGHCMKTLIDDE----NPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTG 232
D R+WD +T C++ D+ N V V + NG+ I + +LD TL +
Sbjct: 272 ADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVA-TGNGRIISL-SLDGTLNFYELGHD 329
Query: 233 KILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLW 272
++LKT +GH ++ ++SGS D + W
Sbjct: 330 EVLKTISGHNKGITALTVN-------PLISGSYDGRIMEW 362
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 55/113 (48%), Gaps = 13/113 (11%)
Query: 84 DSRFLVSASDDKTIRLWDVPTATCL------KTLIGHTNYVFCVNFNPQSNMIVSGAFDE 137
DS+ + D TIR+WDV T+ C+ K +G+ N + I+S + D
Sbjct: 263 DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGR---IISLSLDG 319
Query: 138 TVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGH 190
T+ +++ + LK + H+ +TA+ N +++ SYDG W +S+ H
Sbjct: 320 TLNFYELGHDEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMH 368
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 65/263 (24%), Positives = 124/263 (47%), Gaps = 48/263 (18%)
Query: 66 LQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNP 125
L+ +GH +G++ L + L+S S D I W +++ + H+N + ++ N
Sbjct: 332 LKTISGHNKGITALTVNP----LISGSYDGRIMEW---SSSSMHQ--DHSNLIVSLD-NS 381
Query: 126 QSNMIVSGAFDETVRIWDV---KTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCR 182
++ S ++D+T+++ + + G KV A++D TAV N D +I+ S
Sbjct: 382 KAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSF------ 435
Query: 183 IWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLD-NTLRLWNYSTGKI---LKTY 238
TG +K++ N P S V S N ++ VG + NT++++ S ++ LKT
Sbjct: 436 -----TGDIIKSV--RLNSPGSAVSLSQN--YVAVGLEEGNTIQVFKLSDLEVSFDLKTP 486
Query: 239 TGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKV-VQKLEGHTDPVISVASHP 297
S IS + + YI +G + L++LQSR+V + T + +++ P
Sbjct: 487 LRAKPSYISISPSET-----YIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKP 541
Query: 298 T----------ENIIASGALDND 310
E+++A+G+LD +
Sbjct: 542 AEKGANEEEIEEDLVATGSLDTN 564
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 61/121 (50%), Gaps = 6/121 (4%)
Query: 87 FLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQS-NMIVSGAFDETVRIWDVK 145
L A IR+ + T C+K +GH N + + F+P+ N+++S + D +R+W+++
Sbjct: 87 LLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQ 146
Query: 146 TGKCLKV---LPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLID--DEN 200
T + + + H D V + D++ G I++ D ++W ++ M + + D N
Sbjct: 147 TDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYN 206
Query: 201 P 201
P
Sbjct: 207 P 207
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 48/97 (49%), Gaps = 4/97 (4%)
Query: 66 LQKFTGHEQGVSDLVF-SSDSRFLVSASDDKTIRLWDVPTATCLKT---LIGHTNYVFCV 121
++ + GH +++L F D L+S S D +RLW++ T T + + GH + V
Sbjct: 108 IKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSA 167
Query: 122 NFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSD 158
+++ I+S D ++++W + + + + + D
Sbjct: 168 DYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYD 204
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/189 (20%), Positives = 82/189 (43%), Gaps = 15/189 (7%)
Query: 114 HTNYVFCVNFNPQSN----MIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDF---- 165
H +F V FN S ++ + V +++ + +++L ++ D +F
Sbjct: 17 HNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCA 76
Query: 166 -----NRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVG-T 219
N ++ + G+ RI + T C+K + N ++ +KF P +L+ +
Sbjct: 77 WTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNA-INELKFHPRDPNLLLSVS 135
Query: 220 LDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKV 279
D+ LRLWN T ++ + G + + S G+ I+S D + LW + S+++
Sbjct: 136 KDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRM 195
Query: 280 VQKLEGHTD 288
+ ++ D
Sbjct: 196 MNAIKESYD 204
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 61/121 (50%), Gaps = 6/121 (4%)
Query: 87 FLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQS-NMIVSGAFDETVRIWDVK 145
L A IR+ + T C+K +GH N + + F+P+ N+++S + D +R+W+++
Sbjct: 82 LLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQ 141
Query: 146 TGKCLKV---LPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLID--DEN 200
T + + + H D V + D++ G I++ D ++W ++ M + + D N
Sbjct: 142 TDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYN 201
Query: 201 P 201
P
Sbjct: 202 P 202
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 48/97 (49%), Gaps = 4/97 (4%)
Query: 66 LQKFTGHEQGVSDLVF-SSDSRFLVSASDDKTIRLWDVPTATCLKT---LIGHTNYVFCV 121
++ + GH +++L F D L+S S D +RLW++ T T + + GH + V
Sbjct: 103 IKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSA 162
Query: 122 NFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSD 158
+++ I+S D ++++W + + + + + D
Sbjct: 163 DYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYD 199
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/189 (20%), Positives = 82/189 (43%), Gaps = 15/189 (7%)
Query: 114 HTNYVFCVNFNPQSN----MIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDF---- 165
H +F V FN S ++ + V +++ + +++L ++ D +F
Sbjct: 12 HNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCA 71
Query: 166 -----NRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVG-T 219
N ++ + G+ RI + T C+K + N ++ +KF P +L+ +
Sbjct: 72 WTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNA-INELKFHPRDPNLLLSVS 130
Query: 220 LDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKV 279
D+ LRLWN T ++ + G + + S G+ I+S D + LW + S+++
Sbjct: 131 KDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRM 190
Query: 280 VQKLEGHTD 288
+ ++ D
Sbjct: 191 MNAIKESYD 199
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 61/121 (50%), Gaps = 6/121 (4%)
Query: 87 FLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQS-NMIVSGAFDETVRIWDVK 145
L A IR+ + T C+K +GH N + + F+P+ N+++S + D +R+W+++
Sbjct: 86 LLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQ 145
Query: 146 TGKCLKV---LPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLID--DEN 200
T + + + H D V + D++ G I++ D ++W ++ M + + D N
Sbjct: 146 TDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYN 205
Query: 201 P 201
P
Sbjct: 206 P 206
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 48/97 (49%), Gaps = 4/97 (4%)
Query: 66 LQKFTGHEQGVSDLVF-SSDSRFLVSASDDKTIRLWDVPTATCLKT---LIGHTNYVFCV 121
++ + GH +++L F D L+S S D +RLW++ T T + + GH + V
Sbjct: 107 IKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSA 166
Query: 122 NFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSD 158
+++ I+S D ++++W + + + + + D
Sbjct: 167 DYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYD 203
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/189 (20%), Positives = 82/189 (43%), Gaps = 15/189 (7%)
Query: 114 HTNYVFCVNFNPQSN----MIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDF---- 165
H +F V FN S ++ + V +++ + +++L ++ D +F
Sbjct: 16 HNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCA 75
Query: 166 -----NRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVG-T 219
N ++ + G+ RI + T C+K + N ++ +KF P +L+ +
Sbjct: 76 WTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNA-INELKFHPRDPNLLLSVS 134
Query: 220 LDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKV 279
D+ LRLWN T ++ + G + + S G+ I+S D + LW + S+++
Sbjct: 135 KDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRM 194
Query: 280 VQKLEGHTD 288
+ ++ D
Sbjct: 195 MNAIKESYD 203
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 61/121 (50%), Gaps = 6/121 (4%)
Query: 87 FLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQS-NMIVSGAFDETVRIWDVK 145
L A IR+ + T C+K +GH N + + F+P+ N+++S + D +R+W+++
Sbjct: 86 LLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQ 145
Query: 146 TGKCLKV---LPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLID--DEN 200
T + + + H D V + D++ G I++ D ++W ++ M + + D N
Sbjct: 146 TDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYN 205
Query: 201 P 201
P
Sbjct: 206 P 206
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 48/97 (49%), Gaps = 4/97 (4%)
Query: 66 LQKFTGHEQGVSDLVF-SSDSRFLVSASDDKTIRLWDVPTATCLKT---LIGHTNYVFCV 121
++ + GH +++L F D L+S S D +RLW++ T T + + GH + V
Sbjct: 107 IKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSA 166
Query: 122 NFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSD 158
+++ I+S D ++++W + + + + + D
Sbjct: 167 DYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYD 203
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/189 (20%), Positives = 82/189 (43%), Gaps = 15/189 (7%)
Query: 114 HTNYVFCVNFNPQSN----MIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDF---- 165
H +F V FN S ++ + V +++ + +++L ++ D +F
Sbjct: 16 HNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCA 75
Query: 166 -----NRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVG-T 219
N ++ + G+ RI + T C+K + N ++ +KF P +L+ +
Sbjct: 76 WTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNA-INELKFHPRDPNLLLSVS 134
Query: 220 LDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKV 279
D+ LRLWN T ++ + G + + S G+ I+S D + LW + S+++
Sbjct: 135 KDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRM 194
Query: 280 VQKLEGHTD 288
+ ++ D
Sbjct: 195 MNAIKESYD 203
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 61/121 (50%), Gaps = 6/121 (4%)
Query: 87 FLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQS-NMIVSGAFDETVRIWDVK 145
L A IR+ + T C+K +GH N + + F+P+ N+++S + D +R+W+++
Sbjct: 123 LLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQ 182
Query: 146 TGKCLKV---LPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLID--DEN 200
T + + + H D V + D++ G I++ D ++W ++ M + + D N
Sbjct: 183 TDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYN 242
Query: 201 P 201
P
Sbjct: 243 P 243
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 48/97 (49%), Gaps = 4/97 (4%)
Query: 66 LQKFTGHEQGVSDLVF-SSDSRFLVSASDDKTIRLWDVPTATCLKT---LIGHTNYVFCV 121
++ + GH +++L F D L+S S D +RLW++ T T + + GH + V
Sbjct: 144 IKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSA 203
Query: 122 NFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSD 158
+++ I+S D ++++W + + + + + D
Sbjct: 204 DYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYD 240
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/189 (20%), Positives = 82/189 (43%), Gaps = 15/189 (7%)
Query: 114 HTNYVFCVNFNPQSN----MIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDF---- 165
H +F V FN S ++ + V +++ + +++L ++ D +F
Sbjct: 53 HNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCA 112
Query: 166 -----NRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVG-T 219
N ++ + G+ RI + T C+K + N ++ +KF P +L+ +
Sbjct: 113 WTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNA-INELKFHPRDPNLLLSVS 171
Query: 220 LDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKV 279
D+ LRLWN T ++ + G + + S G+ I+S D + LW + S+++
Sbjct: 172 KDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRM 231
Query: 280 VQKLEGHTD 288
+ ++ D
Sbjct: 232 MNAIKESYD 240
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 61/236 (25%), Positives = 103/236 (43%), Gaps = 32/236 (13%)
Query: 68 KFTGHEQGVSDLVFSSD-SRFLVSASDDKTIRLWDVPTATCLKTLI-------GHTNYVF 119
+ GH++ L ++ + + +L+SASDD TI LWD+ +I GHT V
Sbjct: 176 RLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVE 235
Query: 120 CVNFN-PQSNMIVSGAFDETVRIWDVK---TGKCLKVLPAHSDPVTAVDFNRDGTMIV-T 174
V ++ ++ S A D+ + IWD + T K + AH+ V + FN I+ T
Sbjct: 236 DVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILAT 295
Query: 175 SSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGT-LDNTLRLWNYST-- 231
S D +WD + + V++SP+ + IL + D L +W+ S
Sbjct: 296 GSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIG 355
Query: 232 ------------GKILKTYTGHTNSKYCISSTFSVTNGKYIV-SGSEDSCVYLWEL 274
++L + GHT IS N +I+ S SED+ + +W++
Sbjct: 356 EEQSTEDAEDGPPELLFIHGGHTAK---ISDFSWNPNEPWIICSVSEDNIMQVWQM 408
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 53/220 (24%), Positives = 90/220 (40%), Gaps = 43/220 (19%)
Query: 103 PTATCLK--TLIGHTNYVFCVNFNPQSN-MIVSGAFDETVRIWDVK-TGKCLKVLPAHSD 158
P+ C L GH + +++NP N ++S + D T+ +WD+ T K +V+
Sbjct: 167 PSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVI----- 221
Query: 159 PVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVG 218
D I T G + + H + + F + + K ++
Sbjct: 222 ---------DAKNIFT----GHTAVVEDVAWHLLHESL--------FGSVADDQKLMIWD 260
Query: 219 TLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRK 278
T +N +T K T HT C+S F+ + + +GS D V LW+L++ K
Sbjct: 261 TRNN-------NTSKPSHTVDAHTAEVNCLS--FNPYSEFILATGSADKTVALWDLRNLK 311
Query: 279 V-VQKLEGHTDPVISVASHP-TENIIASGALDNDRTVKIW 316
+ + E H D + V P E I+AS DR + +W
Sbjct: 312 LKLHSFESHKDEIFQVQWSPHNETILASSG--TDRRLHVW 349
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 61/236 (25%), Positives = 103/236 (43%), Gaps = 32/236 (13%)
Query: 68 KFTGHEQGVSDLVFSSD-SRFLVSASDDKTIRLWDVPTATCLKTLI-------GHTNYVF 119
+ GH++ L ++ + + +L+SASDD TI LWD+ +I GHT V
Sbjct: 180 RLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVE 239
Query: 120 CVNFN-PQSNMIVSGAFDETVRIWDVK---TGKCLKVLPAHSDPVTAVDFNRDGTMIV-T 174
V ++ ++ S A D+ + IWD + T K + AH+ V + FN I+ T
Sbjct: 240 DVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILAT 299
Query: 175 SSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGT-LDNTLRLWNYST-- 231
S D +WD + + V++SP+ + IL + D L +W+ S
Sbjct: 300 GSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIG 359
Query: 232 ------------GKILKTYTGHTNSKYCISSTFSVTNGKYIV-SGSEDSCVYLWEL 274
++L + GHT IS N +I+ S SED+ + +W++
Sbjct: 360 EEQSTEDAEDGPPELLFIHGGHTAK---ISDFSWNPNEPWIICSVSEDNIMQVWQM 412
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 54/224 (24%), Positives = 91/224 (40%), Gaps = 43/224 (19%)
Query: 103 PTATCLK--TLIGHTNYVFCVNFNPQSN-MIVSGAFDETVRIWDVK-TGKCLKVLPAHSD 158
P+ C L GH + +++NP N ++S + D T+ +WD+ T K +V+
Sbjct: 171 PSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVI----- 225
Query: 159 PVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVG 218
D I T G + + H + + F + + K ++
Sbjct: 226 ---------DAKNIFT----GHTAVVEDVAWHLLHESL--------FGSVADDQKLMIWD 264
Query: 219 TLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRK 278
T +N +T K T HT C+S F+ + + +GS D V LW+L++ K
Sbjct: 265 TRNN-------NTSKPSHTVDAHTAEVNCLS--FNPYSEFILATGSADKTVALWDLRNLK 315
Query: 279 V-VQKLEGHTDPVISVASHP-TENIIASGALDNDRTVKIWTQEK 320
+ + E H D + V P E I+AS DR + +W K
Sbjct: 316 LKLHSFESHKDEIFQVQWSPHNETILASSG--TDRRLHVWDLSK 357
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 61/236 (25%), Positives = 103/236 (43%), Gaps = 32/236 (13%)
Query: 68 KFTGHEQGVSDLVFSSD-SRFLVSASDDKTIRLWDVPTATCLKTLI-------GHTNYVF 119
+ GH++ L ++ + + +L+SASDD TI LWD+ +I GHT V
Sbjct: 178 RLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVE 237
Query: 120 CVNFN-PQSNMIVSGAFDETVRIWDVK---TGKCLKVLPAHSDPVTAVDFNRDGTMIV-T 174
V ++ ++ S A D+ + IWD + T K + AH+ V + FN I+ T
Sbjct: 238 DVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILAT 297
Query: 175 SSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGT-LDNTLRLWNYST-- 231
S D +WD + + V++SP+ + IL + D L +W+ S
Sbjct: 298 GSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIG 357
Query: 232 ------------GKILKTYTGHTNSKYCISSTFSVTNGKYIV-SGSEDSCVYLWEL 274
++L + GHT IS N +I+ S SED+ + +W++
Sbjct: 358 EEQSTEDAEDGPPELLFIHGGHTAK---ISDFSWNPNEPWIICSVSEDNIMQVWQM 410
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 53/220 (24%), Positives = 90/220 (40%), Gaps = 43/220 (19%)
Query: 103 PTATCLK--TLIGHTNYVFCVNFNPQSN-MIVSGAFDETVRIWDVK-TGKCLKVLPAHSD 158
P+ C L GH + +++NP N ++S + D T+ +WD+ T K +V+
Sbjct: 169 PSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVI----- 223
Query: 159 PVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVG 218
D I T G + + H + + F + + K ++
Sbjct: 224 ---------DAKNIFT----GHTAVVEDVAWHLLHESL--------FGSVADDQKLMIWD 262
Query: 219 TLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRK 278
T +N +T K T HT C+S F+ + + +GS D V LW+L++ K
Sbjct: 263 TRNN-------NTSKPSHTVDAHTAEVNCLS--FNPYSEFILATGSADKTVALWDLRNLK 313
Query: 279 V-VQKLEGHTDPVISVASHP-TENIIASGALDNDRTVKIW 316
+ + E H D + V P E I+AS DR + +W
Sbjct: 314 LKLHSFESHKDEIFQVQWSPHNETILASSG--TDRRLHVW 351
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 73/165 (44%), Gaps = 17/165 (10%)
Query: 116 NYVFCVNFNPQS-NMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNR---DGTM 171
++V V F+P S +++ D + +D K+G+ LK + +PV F D
Sbjct: 207 SFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQK 266
Query: 172 IVTSSYDGLCRIWDASTGHCMKTLIDDE----NPPVSFVKFSPNGKFILVGTLDNTLRLW 227
T D R+WD +T C++ D+ N V V + NG+ I + +LD TL +
Sbjct: 267 FATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVA-TGNGRIISL-SLDGTLNFY 324
Query: 228 NYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLW 272
++LKT +GH ++ ++SGS D + W
Sbjct: 325 ELGHDEVLKTISGHNKGITALTVN-------PLISGSYDGRIXEW 362
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 55/113 (48%), Gaps = 13/113 (11%)
Query: 84 DSRFLVSASDDKTIRLWDVPTATCL------KTLIGHTNYVFCVNFNPQSNMIVSGAFDE 137
DS+ + D TIR+WDV T+ C+ K +G+ N + I+S + D
Sbjct: 263 DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGR---IISLSLDG 319
Query: 138 TVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGH 190
T+ +++ + LK + H+ +TA+ N +++ SYDG W +S+ H
Sbjct: 320 TLNFYELGHDEVLKTISGHNKGITALTVNP----LISGSYDGRIXEWSSSSXH 368
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 65/263 (24%), Positives = 121/263 (46%), Gaps = 48/263 (18%)
Query: 66 LQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNP 125
L+ +GH +G++ L + L+S S D I W + H+N + ++ N
Sbjct: 332 LKTISGHNKGITALTVNP----LISGSYDGRIXEWSSSSXHQ-----DHSNLIVSLD-NS 381
Query: 126 QSNMIVSGAFDETVRIWDV---KTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCR 182
++ S ++D+T+++ + + G KV A++D TAV N D +I+ S
Sbjct: 382 KAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSF------ 435
Query: 183 IWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLD-NTLRLWNYSTGKI---LKTY 238
TG +K++ N P S V S N ++ VG + NT++++ S ++ LKT
Sbjct: 436 -----TGDIIKSV--RLNSPGSAVSLSQN--YVAVGLEEGNTIQVFKLSDLEVSFDLKTP 486
Query: 239 TGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKV-VQKLEGHTDPVISVASHP 297
S IS + + YI +G + L++LQSR+V + T + +++ P
Sbjct: 487 LRAKPSYISISPSET-----YIAAGDVXGKILLYDLQSREVKTSRWAFRTSKINAISWKP 541
Query: 298 T----------ENIIASGALDND 310
E+++A+G+LD +
Sbjct: 542 AEKGANEEEIEEDLVATGSLDTN 564
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/236 (25%), Positives = 103/236 (43%), Gaps = 32/236 (13%)
Query: 68 KFTGHEQGVSDLVFSSD-SRFLVSASDDKTIRLWDVPTATCLKTLI-------GHTNYVF 119
+ GH++ L ++S+ S L+SASDD T+ LWD+ ++ GH+ V
Sbjct: 174 RLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVE 233
Query: 120 CVNFN-PQSNMIVSGAFDETVRIWDVK---TGKCLKVLPAHSDPVTAVDFNRDGTMIV-T 174
V ++ ++ S A D+ + IWD + T K ++ AH+ V + FN I+ T
Sbjct: 234 DVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILAT 293
Query: 175 SSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGT-LDNTLRLWNYST-- 231
S D +WD + + V +SP+ + IL + D L +W+ S
Sbjct: 294 GSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIG 353
Query: 232 ------------GKILKTYTGHTNSKYCISSTFSVTNGKYIV-SGSEDSCVYLWEL 274
++L + GHT IS N +++ S SED+ + +W++
Sbjct: 354 EEQSAEDAEDGPPELLFIHGGHTAK---ISDFSWNPNEPWVICSVSEDNIMQIWQM 406
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 50/224 (22%), Positives = 88/224 (39%), Gaps = 43/224 (19%)
Query: 103 PTATCLK--TLIGHTNYVFCVNFNPQ-SNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDP 159
P+ C L GH + +++N S ++S + D TV +WD+ G
Sbjct: 165 PSGECNPDLRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGP----------- 213
Query: 160 VTAVDFNRDGTMI-VTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVG 218
++G ++ + + G + + H + + F + + K ++
Sbjct: 214 -------KEGKIVDAKAIFTGHSAVVEDVAWHLLHESL--------FGSVADDQKLMIWD 258
Query: 219 TLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRK 278
T NT T K HT C+S F+ + + +GS D V LW+L++ K
Sbjct: 259 TRSNT-------TSKPSHLVDAHTAEVNCLS--FNPYSEFILATGSADKTVALWDLRNLK 309
Query: 279 V-VQKLEGHTDPVISVASHP-TENIIASGALDNDRTVKIWTQEK 320
+ + E H D + V P E I+AS DR + +W K
Sbjct: 310 LKLHTFESHKDEIFQVHWSPHNETILASSG--TDRRLNVWDLSK 351
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 64/252 (25%), Positives = 108/252 (42%), Gaps = 33/252 (13%)
Query: 68 KFTGHEQGVSDLVFSSD-SRFLVSASDDKTIRLWDVPTATCLKTLI-------GHTNYVF 119
+ GH++ L ++ + S L+SASDD TI LWD+ ++ GHT V
Sbjct: 172 RLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVE 231
Query: 120 CVNFN-PQSNMIVSGAFDETVRIWDVK---TGKCLKVLPAHSDPVTAVDFNRDGTMIV-T 174
V+++ ++ S A D+ + IWD + T K + AH+ V + FN I+ T
Sbjct: 232 DVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILAT 291
Query: 175 SSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGT-LDNTLRLWNYS--- 230
S D +WD + + V++SP+ + IL + D L +W+ S
Sbjct: 292 GSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIG 351
Query: 231 -----------TGKILKTYTGHTNSKYCISSTFSVTNGKYIV-SGSEDSCVYLWELQSRK 278
++L + GHT IS N +++ S SED+ + +W++
Sbjct: 352 EEQSPEDAEDGPPELLFIHGGHTAK---ISDFSWNPNEPWVICSVSEDNIMQVWQMAENI 408
Query: 279 VV-QKLEGHTDP 289
+ EG DP
Sbjct: 409 YNDEDPEGSVDP 420
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 59/235 (25%), Positives = 101/235 (42%), Gaps = 32/235 (13%)
Query: 68 KFTGHEQGVSDLVFSSD-SRFLVSASDDKTIRLWDVPTATCLKTLI-------GHTNYVF 119
+ GH++ L ++S+ S L+SASDD T+ LWD+ ++ GH+ V
Sbjct: 174 RLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVE 233
Query: 120 CVNFN-PQSNMIVSGAFDETVRIWDVK---TGKCLKVLPAHSDPVTAVDFNRDGTMIV-T 174
V ++ ++ S A D+ + IWD + T K ++ AH+ V + FN I+ T
Sbjct: 234 DVAWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILAT 293
Query: 175 SSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGT-LDNTLRLWNYST-- 231
S D +WD + + V +SP+ + IL + D L +W+ S
Sbjct: 294 GSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIG 353
Query: 232 ------------GKILKTYTGHTNSKYCISSTFSVTNGKYIV-SGSEDSCVYLWE 273
++L + GHT IS N +++ S SED+ +W+
Sbjct: 354 EEQSAEDAEDGPPELLFIHGGHTAK---ISDFSWNPNEPWVICSVSEDNIXQIWQ 405
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 50/224 (22%), Positives = 87/224 (38%), Gaps = 43/224 (19%)
Query: 103 PTATCLK--TLIGHTNYVFCVNFNPQ-SNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDP 159
P+ C L GH + +++N S ++S + D TV +WD+ G
Sbjct: 165 PSGECNPDLRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGP----------- 213
Query: 160 VTAVDFNRDGTMI-VTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVG 218
++G ++ + + G + + H + + F + + K +
Sbjct: 214 -------KEGKIVDAKAIFTGHSAVVEDVAWHLLHESL--------FGSVADDQKLXIWD 258
Query: 219 TLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRK 278
T NT T K HT C+S F+ + + +GS D V LW+L++ K
Sbjct: 259 TRSNT-------TSKPSHLVDAHTAEVNCLS--FNPYSEFILATGSADKTVALWDLRNLK 309
Query: 279 V-VQKLEGHTDPVISVASHP-TENIIASGALDNDRTVKIWTQEK 320
+ + E H D + V P E I+AS DR + +W K
Sbjct: 310 LKLHTFESHKDEIFQVHWSPHNETILASSG--TDRRLNVWDLSK 351
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 57/233 (24%), Positives = 95/233 (40%), Gaps = 29/233 (12%)
Query: 114 HTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKV--LPAHSDPVTAVDFNRD--G 169
H + + + + + + D +V+I+DV+ G + + L H PV V + G
Sbjct: 12 HEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYG 71
Query: 170 TMIVTSSYDGLCRIWDASTGHCMKTLID-DENPPVSFVKFSPN--GKFILVGTLDNTLRL 226
++ + SYD IW G K+ + V+ V ++P+ G + G+ D + L
Sbjct: 72 NILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISL 131
Query: 227 WNYS---TGKILKTYTGHTNSKYCISSTFSVTNG--------------KYIVSGSEDSCV 269
Y+ ++ K HT +S +V G K SG D+ +
Sbjct: 132 LTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLI 191
Query: 270 YLWELQSR---KVVQKLEGHTDPVISVASHPTENIIAS--GALDNDRTVKIWT 317
LW+ + K QKLE H+D V VA P+ + S + D V IWT
Sbjct: 192 KLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWT 244
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 67/272 (24%), Positives = 98/272 (36%), Gaps = 54/272 (19%)
Query: 2 SSDQSLESFR----PYTLTQTLNGHLRAISSVKFSHD--GRLLASSSADKXXXXXXXXXX 55
SSD+S++ F L L GH + V ++H G +LAS S D+
Sbjct: 32 SSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENG 91
Query: 56 XXXXXXXXXXLQKFTGHEQGVSDLVFSSDSRFLVSA--SDDKTIRL--------WDVPTA 105
+ GH+ V+ + ++ L+ A S D I L W+V
Sbjct: 92 TWEKS------HEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVK-- 143
Query: 106 TCLKTLIGHTNYVFCVNFNP--------------QSNMI---VSGAFDETVRIWDVKTGK 148
K HT V++ P + N I SG D +++W +
Sbjct: 144 ---KINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDG 200
Query: 149 CLKV---LPAHSDPVTAVDF----NRDGTMIVTSSYDGLCRIW---DASTGHCMKTLIDD 198
K L AHSD V V + + I + S DG IW DAS+ L+
Sbjct: 201 QWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHK 260
Query: 199 ENPPVSFVKFSPNGKFILVGTLDNTLRLWNYS 230
N V V +S + V DN + LW S
Sbjct: 261 FNDVVWHVSWSITANILAVSGGDNKVTLWKES 292
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 64/137 (46%), Gaps = 9/137 (6%)
Query: 79 LVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSN-MIVSGAFDE 137
L S+ SR +V+ + + L ++ L L H V V NP + + + + D+
Sbjct: 215 LDVSASSRMVVTGDNVGNVILLNM-DGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQ 273
Query: 138 TVRIWDVKT--GKC--LKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMK 193
TV+IWD++ GK L LP H PV A F+ DG ++T+ R++ AS C
Sbjct: 274 TVKIWDLRQVRGKASFLYSLP-HRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPL 332
Query: 194 TLIDDENPPVSFVKFSP 210
LI +P F +P
Sbjct: 333 GLI--PHPHRHFQHLTP 347
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 64/137 (46%), Gaps = 9/137 (6%)
Query: 79 LVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSN-MIVSGAFDE 137
L S+ SR +V+ + + L ++ L L H V V NP + + + + D+
Sbjct: 215 LDVSASSRMVVTGDNVGNVILLNM-DGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQ 273
Query: 138 TVRIWDVKT--GKC--LKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMK 193
TV+IWD++ GK L LP H PV A F+ DG ++T+ R++ AS C
Sbjct: 274 TVKIWDLRQVRGKASFLYSLP-HRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPL 332
Query: 194 TLIDDENPPVSFVKFSP 210
LI +P F +P
Sbjct: 333 GLI--PHPHRHFQHLTP 347
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 64/137 (46%), Gaps = 9/137 (6%)
Query: 79 LVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSN-MIVSGAFDE 137
L S+ SR +V+ + + L ++ L L H V V NP + + + + D+
Sbjct: 216 LDVSASSRMVVTGDNVGNVILLNM-DGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQ 274
Query: 138 TVRIWDVKT--GKC--LKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMK 193
TV+IWD++ GK L LP H PV A F+ DG ++T+ R++ AS C
Sbjct: 275 TVKIWDLRQVRGKASFLYSLP-HRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPL 333
Query: 194 TLIDDENPPVSFVKFSP 210
LI +P F +P
Sbjct: 334 GLI--PHPHRHFQHLTP 348
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 53/111 (47%), Gaps = 14/111 (12%)
Query: 213 KFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYC------ISSTFSV-TNGKYIVSGSE 265
+ ILV + + LW + L SK+C I ST SV ++G VSGS+
Sbjct: 94 RGILVASDSGAVELWELDENETLIV------SKFCKYEHDDIVSTVSVLSSGTQAVSGSK 147
Query: 266 DSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRTVKIW 316
D C+ +W+L + V+ H V VA+ P ++ + +++R + +W
Sbjct: 148 DICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNR-ILLW 197
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 87/208 (41%), Gaps = 24/208 (11%)
Query: 73 EQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLI-------GHTNYVFCVNFNP 125
E GV+DL + + LV ASD + LW++ +TLI H + V V+
Sbjct: 82 EAGVADLTWVGERGILV-ASDSGAVELWELDEN---ETLIVSKFCKYEHDDIVSTVSVLS 137
Query: 126 QSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFN-RDGTMIVTSSYDGLCRIW 184
VSG+ D +++WD+ L AH+ VT V + ++ ++ S D +W
Sbjct: 138 SGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLW 197
Query: 185 DASTGHCMK--TLIDDENP---PVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYT 239
D C K + I P P S + + G + T+ L + + + +
Sbjct: 198 DT---RCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSA 254
Query: 240 GHTNSKYCISS-TFSVTNGKYIVSGSED 266
H+ C++ FS + ++ S SED
Sbjct: 255 VHSQ---CVTGLVFSPHSVPFLASLSED 279
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Query: 72 HEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMI- 130
H+ VS + S VS S D I++WD+ L + H V CV +P + +
Sbjct: 126 HDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVF 185
Query: 131 VSGAFDETVRIWDVKTGK 148
+S + D + +WD + K
Sbjct: 186 LSCSEDNRILLWDTRCPK 203
Score = 35.4 bits (80), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 50/103 (48%), Gaps = 6/103 (5%)
Query: 203 VSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVS 262
VS V +G + G+ D +++W+ + +L +Y H C+++ S +S
Sbjct: 130 VSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAA--SPHKDSVFLS 187
Query: 263 GSEDSCVYLWELQSRKVVQKLEGHTDP---VISVASHPTENII 302
SED+ + LW+ + K ++ G + P S+A HP ++ +
Sbjct: 188 CSEDNRILLWDTRCPKPASQI-GCSAPGYLPTSLAWHPQQSEV 229
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 51/109 (46%), Gaps = 12/109 (11%)
Query: 66 LQKFTGHEQGVSDLVFSS--DSRFLVSASDDKTIRLWDVPTATCLK--TLIGHTNYVFC- 120
L + H V+ + S DS FL S S+D I LWD C K + IG + +
Sbjct: 162 LSSYRAHAAQVTCVAASPHKDSVFL-SCSEDNRILLWDT---RCPKPASQIGCSAPGYLP 217
Query: 121 --VNFNPQ-SNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFN 166
+ ++PQ S + V G + TV + D K+ C+ HS VT + F+
Sbjct: 218 TSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFS 266
>pdb|4AV8|A Chain A, Kluyveromyces Lactis Hsv2 Complete Loop 6cd
pdb|4AV9|A Chain A, Kluyveromyces Lactis Hsv2
pdb|4EXV|A Chain A, Structure Of Kluyveromyces Lactis Hsv2p
Length = 339
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 62/128 (48%), Gaps = 11/128 (8%)
Query: 152 VLPAHSDPVTAVDFNRDGTMIVTSSYDG-LCRIWDASTGHCMKTLIDD-ENPPVSFVKFS 209
++ AH++PV V NR G M+ T S DG L R++ G ++ + + +++S
Sbjct: 174 LVKAHANPVKMVRLNRKGDMVATCSQDGTLIRVFQTDNGVLVREFRRGLDRTSIIDMRWS 233
Query: 210 PNGKFILVGTLDNTL---RLWNYSTGK--ILKTYTGHTNSKYCISSTFSVTNGKYIVSGS 264
P+G + V + TL ++N + K +LK + N KY S +S+ N K VS
Sbjct: 234 PDGSKLAVVSDKWTLHVFEVFNDAENKRHVLKDW---INIKY-FQSEWSICNFKLKVSKG 289
Query: 265 EDSCVYLW 272
+ C W
Sbjct: 290 SNDCKIAW 297
>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|I Chain I, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|J Chain J, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
Length = 351
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 56/241 (23%), Positives = 100/241 (41%), Gaps = 40/241 (16%)
Query: 113 GHTNYVFCVNFNPQSNMIVSGAFDETVRIW----DVKTGKCLKVLPAHSDPVTAVDFNRD 168
GH + V V ++ + + + D+ ++++ D + AH + A+D+
Sbjct: 9 GHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASP 68
Query: 169 --GTMIVTSSYDGLCRIWDAS------TGHCMKTL--IDDENPPVSFVKFSPNGKFILVG 218
G +I ++SYD ++W+ +G L ++D + VKF+P + +
Sbjct: 69 EYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLA 128
Query: 219 TL--DNTLRLWNYSTGKILKTYT-------------GHTNSKYCIS---STFSVTNGKYI 260
L D LRL++ L+++T H S +C+S S FS K
Sbjct: 129 CLGNDGILRLYDALEPSDLRSWTLTSEXKVLSIPPANHLQSDFCLSWCPSRFSPE--KLA 186
Query: 261 VSGSEDSCVYLWELQSR-KVVQKLEGHTDPVISVASHPT----ENIIASGALDND-RTVK 314
VS E + +Y + V KL GH + S++ P+ +IA+G D R K
Sbjct: 187 VSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFK 246
Query: 315 I 315
I
Sbjct: 247 I 247
>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX
pdb|3EWE|C Chain C, Crystal Structure Of The Nup85SEH1 COMPLEX
Length = 349
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/241 (23%), Positives = 100/241 (41%), Gaps = 40/241 (16%)
Query: 113 GHTNYVFCVNFNPQSNMIVSGAFDETVRIW----DVKTGKCLKVLPAHSDPVTAVDFNRD 168
GH + V V ++ + + + D+ ++++ D + AH + A+D+
Sbjct: 7 GHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASP 66
Query: 169 --GTMIVTSSYDGLCRIWDAS------TGHCMKTL--IDDENPPVSFVKFSPNGKFILVG 218
G +I ++SYD ++W+ +G L ++D + VKF+P + +
Sbjct: 67 EYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLA 126
Query: 219 TL--DNTLRLWNYSTGKILKTYT-------------GHTNSKYCIS---STFSVTNGKYI 260
L D LRL++ L+++T H S +C+S S FS K
Sbjct: 127 CLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPE--KLA 184
Query: 261 VSGSEDSCVYLWELQSR-KVVQKLEGHTDPVISVASHPT----ENIIASGALDND-RTVK 314
VS E + +Y + V KL GH + S++ P+ +IA+G D R K
Sbjct: 185 VSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFK 244
Query: 315 I 315
I
Sbjct: 245 I 245
>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
Length = 351
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/241 (23%), Positives = 100/241 (41%), Gaps = 40/241 (16%)
Query: 113 GHTNYVFCVNFNPQSNMIVSGAFDETVRIW----DVKTGKCLKVLPAHSDPVTAVDFNRD 168
GH + V V ++ + + + D+ ++++ D + AH + A+D+
Sbjct: 9 GHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASP 68
Query: 169 --GTMIVTSSYDGLCRIWDAS------TGHCMKTL--IDDENPPVSFVKFSPNGKFILVG 218
G +I ++SYD ++W+ +G L ++D + VKF+P + +
Sbjct: 69 EYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLA 128
Query: 219 TL--DNTLRLWNYSTGKILKTYT-------------GHTNSKYCIS---STFSVTNGKYI 260
L D LRL++ L+++T H S +C+S S FS K
Sbjct: 129 CLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPE--KLA 186
Query: 261 VSGSEDSCVYLWELQSR-KVVQKLEGHTDPVISVASHPT----ENIIASGALDND-RTVK 314
VS E + +Y + V KL GH + S++ P+ +IA+G D R K
Sbjct: 187 VSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFK 246
Query: 315 I 315
I
Sbjct: 247 I 247
>pdb|1SQ9|A Chain A, Structure Of Ski8p, A Wd Repeat Protein Involved In Mrna
Degradation And Meiotic Recombination
Length = 397
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 102 VPTATCLKTL--IGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDP 159
VPT + +L H+++V ++FN + S +D +R WDVKT + + L H D
Sbjct: 276 VPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDD 335
Query: 160 V 160
+
Sbjct: 336 I 336
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 49/103 (47%), Gaps = 18/103 (17%)
Query: 110 TLIGHTNYVFCVNFNPQSNMIV----SGAFDETVRIWDVKTGKCLKVLP----------- 154
++I ++N + V F+PQ +++ S +F + +++ + G+ + L
Sbjct: 228 SMINNSNSIRSVKFSPQGSLLAIAHDSNSFG-CITLYETEFGERIGSLSVPTHSSQASLG 286
Query: 155 --AHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTL 195
AHS V ++ FN G + ++ +DG R WD T + TL
Sbjct: 287 EFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTL 329
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 32/150 (21%), Positives = 67/150 (44%), Gaps = 21/150 (14%)
Query: 160 VTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCM------KTLIDDENPPVSFVKFSPNGK 213
T+VD + G +I T +G +I + ST + ++I++ N S VKFSP G
Sbjct: 189 ATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRS-VKFSPQGS 246
Query: 214 FILVGTLDNT---LRLWNYSTGKILKTYTGHTNSKYCISSTFSVTN----------GKYI 260
+ + N+ + L+ G+ + + + T+S F+ ++ G+ +
Sbjct: 247 LLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETL 306
Query: 261 VSGSEDSCVYLWELQSRKVVQKLEGHTDPV 290
S D + W++++++ + L H D +
Sbjct: 307 CSAGWDGKLRFWDVKTKERITTLNMHCDDI 336
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 11/95 (11%)
Query: 72 HEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMI- 130
H+ V L SD VS D ++++WD+ LK+ H++ V CV P + I
Sbjct: 138 HDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIF 197
Query: 131 VSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDF 165
+S D + +WD + K P T +DF
Sbjct: 198 LSCGEDGRILLWDTRKPK----------PATRIDF 222
Score = 35.0 bits (79), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 55/114 (48%), Gaps = 12/114 (10%)
Query: 213 KFILVGTLDNTLRLWNYSTGKILKTYTGHTN--SKYC---ISSTFSV-TNGKYIVSGSED 266
K ILV + + LW +IL+ + N +KY I T SV ++G VSG +D
Sbjct: 106 KGILVASDSGAVELW-----EILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKD 160
Query: 267 SCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRTVKIWTQEK 320
V +W+L + V++ H+ V VA+ P ++ I ++ R + +W K
Sbjct: 161 FSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGR-ILLWDTRK 213
Score = 34.3 bits (77), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 46/94 (48%), Gaps = 8/94 (8%)
Query: 211 NGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGK--YIVSGSEDSC 268
+G + G D ++++W+ S +LK+Y H++ C+++ GK +S ED
Sbjct: 150 DGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAA----CPGKDTIFLSCGEDGR 205
Query: 269 VYLWELQSRKVVQKLEGHTDPVI--SVASHPTEN 300
+ LW+ + K +++ I SV HP ++
Sbjct: 206 ILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKD 239
>pdb|1S4U|X Chain X, Crystal Structure Analysis Of The Beta-Propeller Protein
Ski8p
Length = 407
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 102 VPTATCLKTL--IGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDP 159
VPT + +L H+++V ++FN + S +D +R WDVKT + + L H D
Sbjct: 286 VPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDD 345
Query: 160 V 160
+
Sbjct: 346 I 346
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 49/103 (47%), Gaps = 18/103 (17%)
Query: 110 TLIGHTNYVFCVNFNPQSNMIV----SGAFDETVRIWDVKTGKCLKVLP----------- 154
++I ++N + V F+PQ +++ S +F + +++ + G+ + L
Sbjct: 238 SMINNSNSIRSVKFSPQGSLLAIAHDSNSFG-CITLYETEFGERIGSLSVPTHSSQASLG 296
Query: 155 --AHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTL 195
AHS V ++ FN G + ++ +DG R WD T + TL
Sbjct: 297 EFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTL 339
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 31/150 (20%), Positives = 67/150 (44%), Gaps = 21/150 (14%)
Query: 160 VTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCM------KTLIDDENPPVSFVKFSPNGK 213
T+VD + G +I T +G +I + ST + ++I++ N + VKFSP G
Sbjct: 199 ATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNS-IRSVKFSPQGS 256
Query: 214 FILVGTLDNT---LRLWNYSTGKILKTYTGHTNSKYCISSTFSVTN----------GKYI 260
+ + N+ + L+ G+ + + + T+S F+ ++ G+ +
Sbjct: 257 LLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETL 316
Query: 261 VSGSEDSCVYLWELQSRKVVQKLEGHTDPV 290
S D + W++++++ + L H D +
Sbjct: 317 CSAGWDGKLRFWDVKTKERITTLNMHCDDI 346
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Query: 71 GHEQGVSDLVF-SSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQS-N 128
GH++G+ L + D L+S+ D T+ LW+ +A L N+ F F P++ +
Sbjct: 260 GHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPD 319
Query: 129 MIVSGAFDETVRI 141
+ +FD + +
Sbjct: 320 LFACASFDNKIEV 332
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Query: 93 DDKTIRLWDVPTA-TCLKTL-IGHTNYVFCVNFNPQ-SNMIVSGAFDETVRIWDVKTGKC 149
+D +I +WD+ A T L+TL GH + +++ Q ++++S D TV +W+ ++ +
Sbjct: 238 NDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQ 297
Query: 150 LKVLPAHSD 158
L PA +
Sbjct: 298 LSQFPARGN 306
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 46/237 (19%), Positives = 99/237 (41%), Gaps = 31/237 (13%)
Query: 66 LQKFTGHEQGVSDLVFSSDS-RFLVSASDDKTIRLWDVPTATCLKTLIGHT--------- 115
+ +F+ H V + F++ L S ++ I +WD+ C ++ +T
Sbjct: 106 MARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDM--NKCTESPSNYTPLTPGQSMS 163
Query: 116 --NYVFCVNFNPQ-SNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDP-------VTAVDF 165
+ V + +N +++ S IWD+K K + L +++ P ++ V++
Sbjct: 164 SVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHL-SYTSPNSGIKQQLSVVEW 222
Query: 166 N-RDGTMIVT---SSYDGLCRIWDASTGHC-MKTLIDDENPPVSFVKFSPNGKFILVGT- 219
+ ++ T + T S D IWD + ++TL + + + + +L+ +
Sbjct: 223 HPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSG 282
Query: 220 LDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQS 276
DNT+ LWN + + L + N +C + F+ S D+ + + LQ+
Sbjct: 283 RDNTVLLWNPESAEQLSQFPARGN--WCFKTKFAPEAPDLFACASFDNKIEVQTLQN 337
>pdb|3GRE|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Vps15 Wd
Repeat Domain
Length = 437
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 48/221 (21%), Positives = 96/221 (43%), Gaps = 20/221 (9%)
Query: 66 LQKFTGHEQGVSDLVFSSDSR-FLVSASDDKTIRLWDVPTATCLKTLIGHTNY--VFCVN 122
L+ F +E V F ++ + LV+ ++ + ++D+ T L+ + + V +
Sbjct: 162 LKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSIC 221
Query: 123 FNPQSNMIVSGAFDETVRIWDVKTGKCLKV--LPAHSDPVTAVD----FNRDGTMIVTSS 176
+ + +++ G + IWD++ ++ H+ P+T V+ + ++ ++V S
Sbjct: 222 IDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHA-PITHVEVCQFYGKNSVIVVGGS 280
Query: 177 YDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGK------FILVGTLDNTLRLWNYS 230
IW+ GHC I+ + P S F P K F + +L N L + S
Sbjct: 281 SKTFLTIWNFVKGHCQYAFINSDEQP-SMEHFLPIEKGLEELNFCGIRSL-NALSTISVS 338
Query: 231 TGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYL 271
KIL T S + S +++ K ++S S S V++
Sbjct: 339 NDKIL--LTDEATSSIVMFSLNELSSSKAVISPSRFSDVFI 377
>pdb|3VU4|A Chain A, Crystal Structure Of Kluyvelomyces Marxianus Hsv2
pdb|3VU4|B Chain B, Crystal Structure Of Kluyvelomyces Marxianus Hsv2
Length = 355
Score = 34.7 bits (78), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 59/133 (44%), Gaps = 5/133 (3%)
Query: 152 VLPAHSDPVTAVDFNRDGTMIVTSSYDG-LCRIWDASTGHCMKTLIDD-ENPPVSFVKFS 209
++ AH++P+ V NR M+ T S DG + R++ G ++ + V +K+S
Sbjct: 190 LIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWS 249
Query: 210 PNGKFILVGTLDNTLRLWNYSTGKILKTYT--GHTNSKYCISSTFSVTNGKYIVSGSEDS 267
+G + V + TL ++ + K + G N KY S +S+ N K V
Sbjct: 250 TDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKY-FQSEWSLCNFKLSVDKHVRG 308
Query: 268 CVYLWELQSRKVV 280
C W +S VV
Sbjct: 309 CKIAWISESSLVV 321
>pdb|2VDU|B Chain B, Structure Of Trm8-Trm82, The Yeast Trna M7g Methylation
Complex
pdb|2VDU|D Chain D, Structure Of Trm8-Trm82, The Yeast Trna M7g Methylation
Complex
Length = 450
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 50/102 (49%), Gaps = 14/102 (13%)
Query: 67 QKFT-----GHEQGVSDLVFSSDS---RFLVSASDDKTIRLWDVPTATCL-KTLIGHTNY 117
+KFT GH ++D+ DS +F++++ D+ I++ P + K L GH ++
Sbjct: 184 EKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHF 243
Query: 118 V--FCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHS 157
V C + +++S D+ + WD KTGK L +S
Sbjct: 244 VSSICCG---KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNS 282
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 54/124 (43%), Gaps = 6/124 (4%)
Query: 139 VRIWDVKT--GKCLKVLPAHSD--PVTAVDFNRDGTMIV-TSSYDGLCRIWDASTGHCMK 193
++IWD + + ++L D P+ VD + + +V T DG+ IWD G
Sbjct: 214 LKIWDFRQQGNEPSQILSLTGDRVPLHCVDRHPNQQHVVATGGQDGMLSIWDVRQGTMPV 273
Query: 194 TLIDDENPPVSFVKFSP-NGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTF 252
+L+ + V F P N + + + D +L W+ ST K+ H + +
Sbjct: 274 SLLKAHEAEMWEVHFHPSNPEHLFTCSEDGSLWHWDASTDVPEKSSLFHQGGRSSTFLSH 333
Query: 253 SVTN 256
S++N
Sbjct: 334 SISN 337
>pdb|4A08|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex (
Purine At D-1 Position) At 3.0 A Resolution (Cpd 1)
pdb|4A09|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 15 Bp Cpd-Duplex
(Purine At D-1 Position) At 3.1 A Resolution (Cpd 2)
pdb|4A0A|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3)
pdb|4A0B|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0B|D Chain D, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0K|D Chain D, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|B Chain B, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|D Chain D, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 382
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 7/77 (9%)
Query: 114 HTNYVFCVNFNPQSN-MIVSGAFDETVRIWDVKTGK----CLKVLPAHSDPVTAVDFN-R 167
H V FNP+ + ++ + + D TV++WD++ K + +P H PV A FN
Sbjct: 202 HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMP-HEKPVNAAYFNPT 260
Query: 168 DGTMIVTSSYDGLCRIW 184
D T ++T+ R++
Sbjct: 261 DSTKLLTTDQRNEIRVY 277
>pdb|3EI1|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4
Photoproduct Containing Dna-Duplex
pdb|3EI2|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Abasic Site
Containing Dna-Duplex
pdb|3EI3|B Chain B, Structure Of The Hsddb1-Drddb2 Complex
Length = 383
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 7/77 (9%)
Query: 114 HTNYVFCVNFNPQSN-MIVSGAFDETVRIWDVKTGK----CLKVLPAHSDPVTAVDFN-R 167
H V FNP+ + ++ + + D TV++WD++ K + +P H PV A FN
Sbjct: 203 HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMP-HEKPVNAAYFNPT 261
Query: 168 DGTMIVTSSYDGLCRIW 184
D T ++T+ R++
Sbjct: 262 DSTKLLTTDQRNEIRVY 278
>pdb|3E0C|A Chain A, Crystal Structure Of Dna Damage-Binding Protein 1(Ddb1)
Length = 1140
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 37/60 (61%), Gaps = 7/60 (11%)
Query: 204 SFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSG 263
S V+F NGK L+ ++++T+RL+ ++T K L+T H N+ I + + T G +I+ G
Sbjct: 872 SMVEF--NGK--LLASINSTVRLYEWTTEKELRTECNHYNN---IMALYLKTKGDFILVG 924
>pdb|4E54|A Chain A, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
pdb|4E5Z|A Chain A, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 1150
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 37/60 (61%), Gaps = 7/60 (11%)
Query: 204 SFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSG 263
S V+F NGK L+ ++++T+RL+ ++T K L+T H N+ I + + T G +I+ G
Sbjct: 882 SMVEF--NGK--LLASINSTVRLYEWTTEKELRTECNHYNN---IMALYLKTKGDFILVG 934
>pdb|4A11|A Chain A, Structure Of The Hsddb1-Hscsa Complex
pdb|4A0K|C Chain C, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 1159
Score = 32.3 bits (72), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 37/60 (61%), Gaps = 7/60 (11%)
Query: 204 SFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSG 263
S V+F NGK L+ ++++T+RL+ ++T K L+T H N+ I + + T G +I+ G
Sbjct: 891 SMVEF--NGK--LLASINSTVRLYEWTTEKELRTECNHYNN---IMALYLKTKGDFILVG 943
>pdb|3EI1|A Chain A, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4
Photoproduct Containing Dna-Duplex
pdb|3EI2|A Chain A, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Abasic Site
Containing Dna-Duplex
pdb|3EI3|A Chain A, Structure Of The Hsddb1-Drddb2 Complex
Length = 1158
Score = 32.3 bits (72), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 37/60 (61%), Gaps = 7/60 (11%)
Query: 204 SFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSG 263
S V+F NGK L+ ++++T+RL+ ++T K L+T H N+ I + + T G +I+ G
Sbjct: 890 SMVEF--NGK--LLASINSTVRLYEWTTEKELRTECNHYNN---IMALYLKTKGDFILVG 942
>pdb|4A0A|A Chain A, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3)
Length = 1159
Score = 32.3 bits (72), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 37/60 (61%), Gaps = 7/60 (11%)
Query: 204 SFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSG 263
S V+F NGK L+ ++++T+RL+ ++T K L+T H N+ I + + T G +I+ G
Sbjct: 891 SMVEF--NGK--LLASINSTVRLYEWTTEKELRTECNHYNN---IMALYLKTKGDFILVG 943
>pdb|4A08|A Chain A, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex (
Purine At D-1 Position) At 3.0 A Resolution (Cpd 1)
pdb|4A09|A Chain A, Structure Of Hsddb1-Drddb2 Bound To A 15 Bp Cpd-Duplex
(Purine At D-1 Position) At 3.1 A Resolution (Cpd 2)
Length = 1159
Score = 32.3 bits (72), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 37/60 (61%), Gaps = 7/60 (11%)
Query: 204 SFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSG 263
S V+F NGK L+ ++++T+RL+ ++T K L+T H N+ I + + T G +I+ G
Sbjct: 891 SMVEF--NGK--LLASINSTVRLYEWTTEKELRTECNHYNN---IMALYLKTKGDFILVG 943
>pdb|4A0L|A Chain A, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|C Chain C, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 1144
Score = 32.3 bits (72), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 37/60 (61%), Gaps = 7/60 (11%)
Query: 204 SFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSG 263
S V+F NGK L+ ++++T+RL+ ++T K L+T H N+ I + + T G +I+ G
Sbjct: 876 SMVEF--NGK--LLASINSTVRLYEWTTEKELRTECNHYNN---IMALYLKTKGDFILVG 928
>pdb|4A0B|A Chain A, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0B|C Chain C, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
Length = 1159
Score = 32.3 bits (72), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 37/60 (61%), Gaps = 7/60 (11%)
Query: 204 SFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSG 263
S V+F NGK L+ ++++T+RL+ ++T K L+T H N+ I + + T G +I+ G
Sbjct: 891 SMVEF--NGK--LLASINSTVRLYEWTTEKELRTECNHYNN---IMALYLKTKGDFILVG 943
>pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0944636
pdb|3DXM|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0993548
pdb|3RSE|C Chain C, Structural And Biochemical Characterization Of Two Binding
Sites For Nucleation Promoting Factor Wasp-Vca On Arp23
COMPLEX
pdb|3UKR|C Chain C, Crystal Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-666
pdb|3UKU|C Chain C, Structure Of Arp2/3 Complex With Bound Inhibitor Ck-869
pdb|3ULE|C Chain C, Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-869 And Atp
Length = 372
Score = 32.0 bits (71), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 45/250 (18%), Positives = 89/250 (35%), Gaps = 42/250 (16%)
Query: 66 LQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLI--GHTNYVFCVNF 123
+ + H V+ + ++ DS +V+ D+ +W + T TL+ CV +
Sbjct: 45 VHELKEHNGQVTGIDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRW 104
Query: 124 NPQSNMIVSGAFDETVRI--------WDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTS 175
P G+ + I W V C + V ++D++ + ++
Sbjct: 105 APNEKKFAVGSGSRVISICYFEQENDWWV----CKHIKKPIRSTVLSLDWHPNSVLLAAG 160
Query: 176 SYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKIL 235
S D CRI+ A +++ P + P G+ +
Sbjct: 161 SCDFKCRIFSAYIKE-----VEERPAPTPWGSKMPFGELM-------------------- 195
Query: 236 KTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVAS 295
+ ++ + FS NG + S DS V L + + V L T P+++V
Sbjct: 196 --FESSSSCGWVHGVCFS-ANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTF 252
Query: 296 HPTENIIASG 305
+++A+G
Sbjct: 253 ITESSLVAAG 262
Score = 31.2 bits (69), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 43/105 (40%), Gaps = 3/105 (2%)
Query: 118 VFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKV--LPAHSDPVTAVDFNRDGTMIVTS 175
+ C +N I + V I++ K ++V L H+ VT +D+ D IVT
Sbjct: 11 ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGIDWAPDSNRIVTC 70
Query: 176 SYDGLCRIWDASTGHCMKTL-IDDENPPVSFVKFSPNGKFILVGT 219
D +W TL I N V+++PN K VG+
Sbjct: 71 GTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGS 115
>pdb|1U4C|A Chain A, Structure Of Spindle Checkpoint Protein Bub3
pdb|1U4C|B Chain B, Structure Of Spindle Checkpoint Protein Bub3
Length = 349
Score = 32.0 bits (71), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 190 HCMKTLIDDENP--PVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYT 239
C + + D N PV+ ++FSP KF+ D + WN T K +K +
Sbjct: 239 RCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFA 290
>pdb|2I3T|A Chain A, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|C Chain C, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|E Chain E, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|G Chain G, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
Length = 341
Score = 32.0 bits (71), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 190 HCMKTLIDDENP--PVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYT 239
C + + D N PV+ ++FSP KF+ D + WN T K +K +
Sbjct: 239 RCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFA 290
>pdb|2I3S|A Chain A, Bub3 Complex With Bub1 Glebs Motif
pdb|2I3S|C Chain C, Bub3 Complex With Bub1 Glebs Motif
pdb|2I3S|E Chain E, Bub3 Complex With Bub1 Glebs Motif
Length = 349
Score = 32.0 bits (71), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 190 HCMKTLIDDENP--PVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYT 239
C + + D N PV+ ++FSP KF+ D + WN T K +K +
Sbjct: 239 RCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFA 290
>pdb|1YFQ|A Chain A, High Resolution S. Cerevisiae Bub3 Mitotic Checkpoint
Protein
Length = 342
Score = 32.0 bits (71), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 190 HCMKTLIDDENP--PVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYT 239
C + + D N PV+ ++FSP KF+ D + WN T K +K +
Sbjct: 239 RCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFA 290
>pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX
pdb|1TYQ|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ATP AND
Calcium
pdb|1U2V|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ADP AND
Calcium
pdb|2P9I|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp And Crosslinked With Gluteraldehyde
pdb|2P9K|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Atp And Crosslinked With Glutaraldehyde
pdb|2P9L|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
pdb|2P9N|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9P|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9S|C Chain C, Structure Of Bovine Arp23 COMPLEX CO-Crystallized With
AtpMG2+
pdb|2P9U|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Amp-Pnp And Calcium
Length = 372
Score = 31.6 bits (70), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 45/250 (18%), Positives = 89/250 (35%), Gaps = 42/250 (16%)
Query: 66 LQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLI--GHTNYVFCVNF 123
+ + H V+ + ++ DS +V+ D+ +W + T TL+ CV +
Sbjct: 45 VHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRW 104
Query: 124 NPQSNMIVSGAFDETVRI--------WDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTS 175
P G+ + I W V C + V ++D++ + ++
Sbjct: 105 APNEKKFAVGSGSRVISICYFEQENDWWV----CKHIKKPIRSTVLSLDWHPNSVLLAAG 160
Query: 176 SYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKIL 235
S D CRI+ A +++ P + P G+ +
Sbjct: 161 SCDFKCRIFSAYIKE-----VEERPAPTPWGSKMPFGELM-------------------- 195
Query: 236 KTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVAS 295
+ ++ + FS NG + S DS V L + + V L T P+++V
Sbjct: 196 --FESSSSCGWVHGVCFS-ANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTF 252
Query: 296 HPTENIIASG 305
+++A+G
Sbjct: 253 ITESSLVAAG 262
Score = 31.6 bits (70), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 43/105 (40%), Gaps = 3/105 (2%)
Query: 118 VFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKV--LPAHSDPVTAVDFNRDGTMIVTS 175
+ C +N I + V I++ K ++V L H+ VT VD+ D IVT
Sbjct: 11 ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTC 70
Query: 176 SYDGLCRIWDASTGHCMKTLIDDE-NPPVSFVKFSPNGKFILVGT 219
D +W TL+ N V+++PN K VG+
Sbjct: 71 GTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGS 115
>pdb|3EU7|A Chain A, Crystal Structure Of A Palb2 BRCA2 COMPLEX
Length = 356
Score = 31.2 bits (69), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 10/57 (17%)
Query: 179 GLCRIWDASTGHCMKTLIDDENPPV-----SFVKFSPNGKFILVGTLDNTLRLWNYS 230
G IWD G C L PPV SFVK+S +L G D + +++YS
Sbjct: 305 GTIAIWDLLLGQCTALL-----PPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHYS 356
>pdb|2B5L|A Chain A, Crystal Structure Of Ddb1 In Complex With Simian Virus 5 V
Protein
pdb|2B5L|B Chain B, Crystal Structure Of Ddb1 In Complex With Simian Virus 5 V
Protein
pdb|2B5M|A Chain A, Crystal Structure Of Ddb1
pdb|2HYE|A Chain A, Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Complex
Length = 1140
Score = 31.2 bits (69), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 37/60 (61%), Gaps = 7/60 (11%)
Query: 204 SFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSG 263
S V+F NGK L+ ++++T+RL+ ++T K ++T H N+ I + + T G +I+ G
Sbjct: 872 SMVEF--NGK--LLASINSTVRLYEWTTEKDVRTECNHYNN---IMALYLKTKGDFILVG 924
>pdb|3I7H|A Chain A, Crystal Structure Of Ddb1 In Complex With The H-Box Motif
Of Hbx
pdb|3I7K|A Chain A, Crystal Structure Of Ddb1 In Complex With The H-Box Motif
Of Whx
pdb|3I7L|A Chain A, Crystal Structure Of Ddb1 In Complex With The H-Box Motif
Of Ddb2
pdb|3I7N|A Chain A, Crystal Structure Of Ddb1 In Complex With The H-Box Motif
Of Wdtc1
pdb|3I7O|A Chain A, Crystal Structure Of Ddb1 In Complex With The H-Box Motif
Of Iqwd1
pdb|3I7P|A Chain A, Crystal Structure Of Ddb1 In Complex With The H-Box Motif
Of Wdr40a
pdb|3I89|A Chain A, Crystal Structure Of Ddb1 In Complex With The H-Box Motif
Of Wdr22
pdb|3I8C|A Chain A, Crystal Structure Of Ddb1 In Complex With The H-Box Motif
Of Wdr21a
pdb|3I8E|A Chain A, Crystal Structure Of Ddb1 In Complex With The H-Box Motif
Of Wdr42a
pdb|3I8E|B Chain B, Crystal Structure Of Ddb1 In Complex With The H-Box Motif
Of Wdr42a
Length = 1143
Score = 30.8 bits (68), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 37/60 (61%), Gaps = 7/60 (11%)
Query: 204 SFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSG 263
S V+F NGK L+ ++++T+RL+ ++T K ++T H N+ I + + T G +I+ G
Sbjct: 875 SMVEF--NGK--LLASINSTVRLYEWTTEKDVRTECNHYNN---IMALYLKTKGDFILVG 927
>pdb|2W18|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Human
Palb2
Length = 356
Score = 30.8 bits (68), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 10/57 (17%)
Query: 179 GLCRIWDASTGHCMKTLIDDENPPV-----SFVKFSPNGKFILVGTLDNTLRLWNYS 230
G IWD G C L PPV SFVK+S +L G D + +++YS
Sbjct: 305 GTIAIWDLLLGQCTALL-----PPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHYS 356
>pdb|3EI4|A Chain A, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|C Chain C, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|E Chain E, Structure Of The Hsddb1-Hsddb2 Complex
Length = 1158
Score = 30.8 bits (68), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 37/60 (61%), Gaps = 7/60 (11%)
Query: 204 SFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSG 263
S V+F NGK L+ ++++T+RL+ ++T K ++T H N+ I + + T G +I+ G
Sbjct: 890 SMVEF--NGK--LLASINSTVRLYEWTTEKDVRTECNHYNN---IMALYLKTKGDFILVG 942
>pdb|1FLG|A Chain A, Crystal Structure Of The Quinoprotein Ethanol
Dehydrogenase From Pseudomonas Aeruginosa
pdb|1FLG|B Chain B, Crystal Structure Of The Quinoprotein Ethanol
Dehydrogenase From Pseudomonas Aeruginosa
Length = 582
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 44/99 (44%), Gaps = 9/99 (9%)
Query: 168 DGTMIVTSSYDGLCRIWDASTGHCMKT----LIDDENPPVSFVKFSPN--GKFILVGTLD 221
DG + VT+SY L + DA TG + T L DD P V G + GTLD
Sbjct: 68 DGVIYVTASYSRLFAL-DAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGTLD 126
Query: 222 NTLRLWNYSTGKIL--KTYTGHTNSKYCISSTFSVTNGK 258
++ N +TGK++ K + H + V +GK
Sbjct: 127 ASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGK 165
>pdb|1L0Q|A Chain A, Tandem Yvtn Beta-Propeller And Pkd Domains From An
Archaeal Surface Layer Protein
pdb|1L0Q|B Chain B, Tandem Yvtn Beta-Propeller And Pkd Domains From An
Archaeal Surface Layer Protein
pdb|1L0Q|C Chain C, Tandem Yvtn Beta-Propeller And Pkd Domains From An
Archaeal Surface Layer Protein
pdb|1L0Q|D Chain D, Tandem Yvtn Beta-Propeller And Pkd Domains From An
Archaeal Surface Layer Protein
Length = 391
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 63/151 (41%), Gaps = 5/151 (3%)
Query: 89 VSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGK 148
++ S+ I + DV + T+ +N V + + V+ A V I D T
Sbjct: 6 IANSESDNISVIDVTSNKVTATIPVGSNPXGAVISPDGTKVYVANAHSNDVSIIDTATNN 65
Query: 149 CLKVLPAHSDPVTAVDFNRDGTMI-VTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVK 207
+ +PA S P V + DG + VT+ + D ++ T+ ++P +
Sbjct: 66 VIATVPAGSSP-QGVAVSPDGKQVYVTNXASSTLSVIDTTSNTVAGTVKTGKSP--LGLA 122
Query: 208 FSPNGKFILV-GTLDNTLRLWNYSTGKILKT 237
SP+GK + V D T+ + N T ++ T
Sbjct: 123 LSPDGKKLYVTNNGDKTVSVINTVTKAVINT 153
>pdb|3A8U|X Chain X, Crystal Structure Of Omega-Amino Acid:pyruvate
Aminotransferase
Length = 449
Score = 28.1 bits (61), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 13/75 (17%)
Query: 153 LPAHSDPVTA-VDFNRDGTMIVTSS------------YDGLCRIWDASTGHCMKTLIDDE 199
L AH P TA +F RD +IV + YD L +W GH K + +
Sbjct: 16 LDAHWMPYTANRNFLRDPRLIVAAEGSWLVDDKGRKVYDSLSGLWTCGAGHTRKEIQEAV 75
Query: 200 NPPVSFVKFSPNGKF 214
+S + +SP ++
Sbjct: 76 AKQLSTLDYSPGFQY 90
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.131 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,202,641
Number of Sequences: 62578
Number of extensions: 361143
Number of successful extensions: 2546
Number of sequences better than 100.0: 127
Number of HSP's better than 100.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 881
Number of HSP's gapped (non-prelim): 489
length of query: 321
length of database: 14,973,337
effective HSP length: 99
effective length of query: 222
effective length of database: 8,778,115
effective search space: 1948741530
effective search space used: 1948741530
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)