BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020799
(321 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1X9R|A Chain A, Umecyanin From Horse Raddish- Crystal Structure Of The
Oxidised Form
pdb|1X9R|B Chain B, Umecyanin From Horse Raddish- Crystal Structure Of The
Oxidised Form
pdb|1X9U|A Chain A, Umecyanin From Horse Raddish- Crystal Structure Of The
Reduced Form
pdb|1X9U|B Chain B, Umecyanin From Horse Raddish- Crystal Structure Of The
Reduced Form
Length = 116
Score = 102 bits (255), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 48/98 (48%), Positives = 64/98 (65%), Gaps = 1/98 (1%)
Query: 30 VGGDLGWQIPPGGAIAYVTWASMQTFSVGDILLFNFTTGQQDVASVTKEAYENCNPASPI 89
VGGD+ W+ P Y+TWA+ +TF VGD L F+F G DVA VTK+A++NC +PI
Sbjct: 6 VGGDMEWKRPSDPKF-YITWATGKTFRVGDELEFDFAAGMHDVAVVTKDAFDNCKKENPI 64
Query: 90 SRKTTGPAEFSLEAAGDYYFICTLELHCTLGQKLAIHV 127
S TT P + L G Y+ICT+ HC +GQKL+I+V
Sbjct: 65 SHMTTPPVKIMLNTTGPQYYICTVGDHCRVGQKLSINV 102
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 52/101 (51%), Gaps = 1/101 (0%)
Query: 146 NYTVGGNIGWAIPPGGALXXXXXXXXXXXXVCDTLVFNFANGTQDVAIVPKDVYETCNIN 205
+Y VGG++ W P V D L F+FA G DVA+V KD ++ C
Sbjct: 3 DYDVGGDMEWKRPSDPKFYITWATGKTFR-VGDELEFDFAAGMHDVAVVTKDAFDNCKKE 61
Query: 206 STIAVFTSSPVKITLKFPGEYYFTSTYLSHCSLGQRLAINV 246
+ I+ T+ PVKI L G Y+ T HC +GQ+L+INV
Sbjct: 62 NPISHMTTPPVKIMLNTTGPQYYICTVGDHCRVGQKLSINV 102
>pdb|1WS7|A Chain A, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (Zucchini)
pdb|1WS7|B Chain B, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (Zucchini)
pdb|1WS7|C Chain C, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (Zucchini)
pdb|1WS7|D Chain D, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (Zucchini)
pdb|1WS8|A Chain A, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (zucchini)
pdb|1WS8|B Chain B, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (zucchini)
pdb|1WS8|C Chain C, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (zucchini)
pdb|1WS8|D Chain D, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (zucchini)
Length = 109
Score = 81.3 bits (199), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 41/104 (39%), Positives = 56/104 (53%), Gaps = 6/104 (5%)
Query: 26 TTHVVGGDLGWQ--IPPGGAIAYVTWASMQTFSVGDILLFNFTTGQQDVASVTKEAYENC 83
T H VG GW +P Y WAS F VGD LLFN+ +V V +E +++C
Sbjct: 3 TVHKVGDSTGWTTLVP----YDYAKWASSNKFHVGDSLLFNYNNKFHNVLQVDQEQFKSC 58
Query: 84 NPASPISRKTTGPAEFSLEAAGDYYFICTLELHCTLGQKLAIHV 127
N +SP + T+G L+ G +YF+C + HC LGQK+ I V
Sbjct: 59 NSSSPAASYTSGADSIPLKRPGTFYFLCGIPGHCQLGQKVEIKV 102
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 44/76 (57%)
Query: 176 VCDTLVFNFANGTQDVAIVPKDVYETCNINSTIAVFTSSPVKITLKFPGEYYFTSTYLSH 235
V D+L+FN+ N +V V ++ +++CN +S A +TS I LK PG +YF H
Sbjct: 32 VGDSLLFNYNNKFHNVLQVDQEQFKSCNSSSPAASYTSGADSIPLKRPGTFYFLCGIPGH 91
Query: 236 CSLGQRLAINVTGTST 251
C LGQ++ I V S+
Sbjct: 92 CQLGQKVEIKVDPGSS 107
>pdb|1JER|A Chain A, Cucumber Stellacyanin, Cu2+, Ph 7.0
Length = 138
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/104 (39%), Positives = 60/104 (57%), Gaps = 3/104 (2%)
Query: 26 TTHVVGGDLGWQIPPGGAIAYVTWASMQTFSVGDILLFNFTTGQQDVASV-TKEAYENCN 84
T H+VG + GW +P Y WA+ +TF VGD L FNF +V + TK++++ CN
Sbjct: 4 TVHIVGDNTGWSVPSSPNF-YSQWAAGKTFRVGDSLQFNFPANAHNVHEMETKQSFDACN 62
Query: 85 -PASPISRKTTGPAEFSLEAAGDYYFICTLELHCTLGQKLAIHV 127
S + T P L+ G +YF+CT+ HC+ GQKL+I+V
Sbjct: 63 FVNSDNDVERTSPVIERLDELGMHYFVCTVGTHCSNGQKLSINV 106
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 50/102 (49%), Gaps = 3/102 (2%)
Query: 147 YTVGGNIGWAIPPGGALXXXXXXXXXXXXVCDTLVFNFANGTQDV-AIVPKDVYETCN-I 204
+ VG N GW++P V D+L FNF +V + K ++ CN +
Sbjct: 6 HIVGDNTGWSVPSSPNFYSQWAAGKTFR-VGDSLQFNFPANAHNVHEMETKQSFDACNFV 64
Query: 205 NSTIAVFTSSPVKITLKFPGEYYFTSTYLSHCSLGQRLAINV 246
NS V +SPV L G +YF T +HCS GQ+L+INV
Sbjct: 65 NSDNDVERTSPVIERLDELGMHYFVCTVGTHCSNGQKLSINV 106
>pdb|2CBP|A Chain A, Cucumber Basic Protein, A Blue Copper Protein
Length = 96
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 45/99 (45%), Gaps = 7/99 (7%)
Query: 28 HVVGGDLGWQIPPGGAIAYVTWASMQTFSVGDILLFNFTTGQQDVASVTKEAYENCNPAS 87
+VVGG GW +W + F GDILLFN+ +V V + + CN +
Sbjct: 3 YVVGGSGGW------TFNTESWPKGKRFRAGDILLFNYNPSMHNVVVVNQGGFSTCNTPA 56
Query: 88 PISRKTTGPAEFSLEAAGDYYFICTLELHCTLGQKLAIH 126
T+G + L G YFIC HC G K+A++
Sbjct: 57 GAKVYTSGRDQIKLP-KGQSYFICNFPGHCQSGMKIAVN 94
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 45/104 (43%), Gaps = 17/104 (16%)
Query: 147 YTVGGNIGWAI-----PPGGALXXXXXXXXXXXXVCDTLVFNFANGTQDVAIVPKDVYET 201
Y VGG+ GW P G D L+FN+ +V +V + + T
Sbjct: 3 YVVGGSGGWTFNTESWPKGKRFRAG-----------DILLFNYNPSMHNVVVVNQGGFST 51
Query: 202 CNINSTIAVFTSSPVKITLKFPGEYYFTSTYLSHCSLGQRLAIN 245
CN + V+TS +I L G+ YF + HC G ++A+N
Sbjct: 52 CNTPAGAKVYTSGRDQIKLP-KGQSYFICNFPGHCQSGMKIAVN 94
>pdb|1F56|A Chain A, Spinach Plantacyanin
pdb|1F56|B Chain B, Spinach Plantacyanin
pdb|1F56|C Chain C, Spinach Plantacyanin
Length = 91
Score = 50.4 bits (119), Expect = 1e-06, Method: Composition-based stats.
Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 8/94 (8%)
Query: 33 DLGWQIPPGGAIAYVTWASMQTFSVGDILLFNFTTGQQDVASVTKEAYENCNPASPISRK 92
++GW GA ++F GD+L+F + GQ +V +V Y +C+
Sbjct: 4 NIGWSFNVNGARG-------KSFRAGDVLVFKYIKGQHNVVAVNGRGYASCSAPRGARTY 56
Query: 93 TTGPAEFSLEAAGDYYFICTLELHCTLGQKLAIH 126
++G L G YFIC+ HC G K+AI+
Sbjct: 57 SSGQDRIKL-TRGQNYFICSFPGHCGGGMKIAIN 89
Score = 40.0 bits (92), Expect = 0.002, Method: Composition-based stats.
Identities = 27/94 (28%), Positives = 40/94 (42%), Gaps = 8/94 (8%)
Query: 152 NIGWAIPPGGALXXXXXXXXXXXXVCDTLVFNFANGTQDVAIVPKDVYETCNINSTIAVF 211
NIGW+ GA D LVF + G +V V Y +C+ +
Sbjct: 4 NIGWSFNVNGARGKSFRAG-------DVLVFKYIKGQHNVVAVNGRGYASCSAPRGARTY 56
Query: 212 TSSPVKITLKFPGEYYFTSTYLSHCSLGQRLAIN 245
+S +I L G+ YF ++ HC G ++AIN
Sbjct: 57 SSGQDRIKLT-RGQNYFICSFPGHCGGGMKIAIN 89
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,138,366
Number of Sequences: 62578
Number of extensions: 253152
Number of successful extensions: 442
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 425
Number of HSP's gapped (non-prelim): 11
length of query: 321
length of database: 14,973,337
effective HSP length: 99
effective length of query: 222
effective length of database: 8,778,115
effective search space: 1948741530
effective search space used: 1948741530
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)