Query 020799
Match_columns 321
No_of_seqs 315 out of 1516
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 05:14:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020799.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020799hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03148 Blue copper-like prot 100.0 4.1E-39 8.9E-44 282.4 13.4 106 21-131 16-121 (167)
2 PLN03148 Blue copper-like prot 100.0 2.2E-37 4.7E-42 271.5 13.8 103 141-248 17-119 (167)
3 PF02298 Cu_bind_like: Plastoc 100.0 1.3E-30 2.9E-35 206.0 5.1 85 155-240 1-85 (85)
4 PF02298 Cu_bind_like: Plastoc 100.0 2.8E-30 6.1E-35 204.1 4.5 85 36-121 1-85 (85)
5 PRK02710 plastocyanin; Provisi 98.5 1.6E-06 3.5E-11 72.4 11.1 70 52-128 48-119 (119)
6 PF00127 Copper-bind: Copper b 98.3 2E-06 4.3E-11 69.3 7.6 76 170-247 17-99 (99)
7 PF00127 Copper-bind: Copper b 98.1 9.6E-06 2.1E-10 65.3 7.6 75 52-128 18-99 (99)
8 TIGR02656 cyanin_plasto plasto 98.1 2.3E-05 4.9E-10 63.2 9.1 76 170-247 17-99 (99)
9 TIGR02656 cyanin_plasto plasto 98.0 4.2E-05 9E-10 61.7 8.7 90 27-128 2-99 (99)
10 TIGR03102 halo_cynanin halocya 97.9 0.00012 2.6E-09 61.2 9.7 88 143-247 22-115 (115)
11 TIGR03102 halo_cynanin halocya 97.9 8.7E-05 1.9E-09 62.0 8.8 88 24-128 22-115 (115)
12 TIGR02375 pseudoazurin pseudoa 97.8 0.00014 2.9E-09 61.0 8.6 76 169-249 14-89 (116)
13 COG3794 PetE Plastocyanin [Ene 97.8 0.00017 3.7E-09 61.4 9.3 69 52-128 55-127 (128)
14 COG3794 PetE Plastocyanin [Ene 97.7 0.00016 3.4E-09 61.6 8.4 70 170-247 54-127 (128)
15 TIGR02375 pseudoazurin pseudoa 97.7 0.00015 3.3E-09 60.7 8.0 74 52-130 16-89 (116)
16 PRK02710 plastocyanin; Provisi 97.4 0.00071 1.5E-08 56.5 8.3 72 169-247 46-119 (119)
17 TIGR03095 rusti_cyanin rusticy 97.4 0.0012 2.6E-08 57.4 9.9 107 118-247 23-148 (148)
18 TIGR02657 amicyanin amicyanin. 97.0 0.0039 8.5E-08 48.6 8.0 71 170-247 11-83 (83)
19 TIGR02657 amicyanin amicyanin. 96.5 0.012 2.7E-07 45.7 7.5 70 52-128 12-83 (83)
20 TIGR03095 rusti_cyanin rusticy 96.5 0.01 2.2E-07 51.6 7.5 73 53-128 54-148 (148)
21 PF06525 SoxE: Sulfocyanin (So 95.9 0.032 6.9E-07 50.8 7.6 30 222-251 161-190 (196)
22 PF00812 Ephrin: Ephrin; Inte 95.8 0.013 2.8E-07 51.0 4.6 76 53-128 24-144 (145)
23 PF06525 SoxE: Sulfocyanin (So 95.8 0.042 9E-07 50.0 7.7 77 56-132 91-190 (196)
24 TIGR03094 sulfo_cyanin sulfocy 93.9 0.061 1.3E-06 48.4 3.6 31 221-251 159-189 (195)
25 PF00812 Ephrin: Ephrin; Inte 93.8 0.14 3.1E-06 44.5 5.7 76 172-247 24-144 (145)
26 PF13473 Cupredoxin_1: Cupredo 93.6 0.041 8.9E-07 44.3 1.9 63 52-127 36-104 (104)
27 KOG3858 Ephrin, ligand for Eph 93.4 0.37 8E-06 45.1 8.0 32 54-85 46-86 (233)
28 COG4454 Uncharacterized copper 92.4 0.55 1.2E-05 41.4 7.2 34 214-247 124-157 (158)
29 PF13473 Cupredoxin_1: Cupredo 91.6 0.4 8.7E-06 38.5 5.2 64 170-246 35-104 (104)
30 TIGR03096 nitroso_cyanin nitro 90.4 0.46 1E-05 40.9 4.6 55 169-232 60-120 (135)
31 TIGR03094 sulfo_cyanin sulfocy 90.3 0.38 8.2E-06 43.5 4.1 30 103-132 160-189 (195)
32 COG4454 Uncharacterized copper 89.9 0.4 8.6E-06 42.2 3.9 78 51-128 63-157 (158)
33 TIGR02695 azurin azurin. Azuri 88.9 4.1 9E-05 34.7 9.1 29 97-126 91-124 (125)
34 TIGR02695 azurin azurin. Azuri 88.5 2.6 5.6E-05 35.9 7.7 29 216-245 91-124 (125)
35 PF05283 MGC-24: Multi-glycosy 88.5 3.6 7.8E-05 37.3 9.1 22 221-242 71-92 (186)
36 TIGR03096 nitroso_cyanin nitro 87.5 0.65 1.4E-05 40.0 3.5 56 51-117 61-122 (135)
37 TIGR02376 Cu_nitrite_red nitri 84.6 3.3 7.1E-05 40.2 7.2 76 171-249 60-147 (311)
38 PF07172 GRP: Glycine rich pro 84.3 0.58 1.3E-05 37.9 1.6 19 1-19 1-19 (95)
39 KOG3858 Ephrin, ligand for Eph 84.0 8.4 0.00018 36.1 9.3 62 190-251 72-164 (233)
40 TIGR02376 Cu_nitrite_red nitri 83.3 3 6.6E-05 40.4 6.4 75 53-130 61-147 (311)
41 PLN02354 copper ion binding / 81.0 14 0.0003 38.8 10.7 79 53-131 60-148 (552)
42 PF07732 Cu-oxidase_3: Multico 78.5 2.1 4.6E-05 35.5 3.0 79 171-249 27-116 (117)
43 PF07732 Cu-oxidase_3: Multico 74.1 3.6 7.7E-05 34.1 3.3 78 52-129 27-115 (117)
44 PRK02888 nitrous-oxide reducta 73.9 7.6 0.00016 41.4 6.3 66 171-248 556-634 (635)
45 PRK10378 inactive ferrous ion 73.3 16 0.00034 36.7 8.1 30 96-130 89-118 (375)
46 PLN00044 multi-copper oxidase- 72.2 45 0.00098 35.5 11.6 79 53-131 62-150 (596)
47 PRK02888 nitrous-oxide reducta 68.9 9.9 0.00021 40.6 5.8 66 52-128 556-633 (635)
48 PF00116 COX2: Cytochrome C ox 65.6 12 0.00025 31.3 4.6 66 170-247 46-120 (120)
49 TIGR02866 CoxB cytochrome c ox 62.5 44 0.00095 30.1 8.1 67 171-249 118-193 (201)
50 PF02839 CBM_5_12: Carbohydrat 60.6 5 0.00011 26.7 1.2 19 46-64 1-19 (41)
51 PF00116 COX2: Cytochrome C ox 60.2 13 0.00027 31.1 3.8 65 51-127 46-119 (120)
52 PF10731 Anophelin: Thrombin i 59.8 8.1 0.00017 28.8 2.3 31 1-34 1-31 (65)
53 PLN02835 oxidoreductase 59.3 1E+02 0.0023 32.2 11.2 79 52-130 61-149 (539)
54 KOG1923 Rac1 GTPase effector F 58.4 20 0.00044 38.9 5.8 12 105-116 159-170 (830)
55 PLN02604 oxidoreductase 56.8 55 0.0012 34.4 8.7 78 52-130 56-145 (566)
56 KOG3671 Actin regulatory prote 56.4 22 0.00048 36.9 5.5 13 173-185 282-294 (569)
57 PF02839 CBM_5_12: Carbohydrat 55.8 6.9 0.00015 26.1 1.3 19 165-183 1-19 (41)
58 TIGR03388 ascorbase L-ascorbat 55.2 30 0.00066 36.0 6.5 80 52-131 33-123 (541)
59 TIGR03388 ascorbase L-ascorbat 54.8 27 0.00058 36.5 6.0 80 171-250 33-123 (541)
60 PLN02168 copper ion binding / 53.4 1.2E+02 0.0027 31.8 10.6 80 52-131 58-147 (545)
61 TIGR02228 sigpep_I_arch signal 50.2 56 0.0012 28.6 6.4 17 52-68 58-74 (158)
62 cd06555 ASCH_PF0470_like ASC-1 48.9 14 0.00031 30.6 2.4 13 53-65 30-42 (109)
63 PF12961 DUF3850: Domain of Un 46.1 12 0.00027 28.8 1.4 16 52-67 26-42 (72)
64 PRK10378 inactive ferrous ion 44.6 73 0.0016 32.0 7.0 29 216-249 90-118 (375)
65 COG1622 CyoA Heme/copper-type 42.9 26 0.00056 33.1 3.4 72 171-250 138-214 (247)
66 COG1622 CyoA Heme/copper-type 40.6 25 0.00053 33.3 2.9 30 98-129 180-212 (247)
67 TIGR01480 copper_res_A copper- 39.7 63 0.0014 34.3 6.0 85 36-127 488-586 (587)
68 MTH00047 COX2 cytochrome c oxi 39.3 37 0.00079 30.9 3.7 31 98-130 159-192 (194)
69 MTH00047 COX2 cytochrome c oxi 38.9 44 0.00096 30.3 4.2 31 217-249 159-192 (194)
70 TIGR01480 copper_res_A copper- 36.9 84 0.0018 33.4 6.4 85 155-246 488-586 (587)
71 PLN02604 oxidoreductase 36.7 81 0.0018 33.2 6.3 34 217-250 113-146 (566)
72 TIGR02866 CoxB cytochrome c ox 35.9 43 0.00094 30.2 3.6 30 98-129 160-192 (201)
73 PLN02191 L-ascorbate oxidase 34.8 2.3E+02 0.0051 29.9 9.3 78 52-129 55-143 (574)
74 KOG2315 Predicted translation 33.9 1.2E+02 0.0027 31.9 6.8 109 114-230 159-277 (566)
75 PF12238 MSA-2c: Merozoite sur 30.8 1.3E+02 0.0029 27.7 5.9 7 296-302 195-201 (205)
76 PRK13838 conjugal transfer pil 29.5 41 0.0009 30.0 2.3 15 52-66 48-62 (176)
77 PF09792 But2: Ubiquitin 3 bin 29.4 1.8E+02 0.0038 25.2 6.1 30 98-130 100-129 (143)
78 PLN02191 L-ascorbate oxidase 29.2 1.3E+02 0.0028 31.8 6.3 78 171-248 55-143 (574)
79 KOG0559 Dihydrolipoamide succi 28.0 4.4E+02 0.0095 26.8 9.2 15 233-247 134-148 (457)
80 PRK09723 putative fimbrial-lik 27.1 3.3E+02 0.0072 27.9 8.4 13 23-35 25-37 (421)
81 PLN02792 oxidoreductase 26.6 1.9E+02 0.0042 30.3 7.0 83 54-136 50-142 (536)
82 TIGR03389 laccase laccase, pla 26.5 1.9E+02 0.0042 30.1 7.0 82 54-136 37-129 (539)
83 PF05382 Amidase_5: Bacterioph 26.1 1.5E+02 0.0033 25.8 5.1 35 53-87 74-113 (145)
84 PF05382 Amidase_5: Bacterioph 25.3 1.5E+02 0.0032 25.9 4.9 35 172-206 74-113 (145)
85 MTH00140 COX2 cytochrome c oxi 25.1 1E+02 0.0022 28.5 4.2 31 217-249 183-216 (228)
86 PLN02168 copper ion binding / 24.8 2.2E+02 0.0047 30.0 6.9 80 171-250 58-147 (545)
87 PF02362 B3: B3 DNA binding do 24.7 49 0.0011 25.6 1.7 19 169-187 69-87 (100)
88 PRK09752 adhesin; Provisional 24.6 86 0.0019 36.1 4.1 9 68-76 603-611 (1250)
89 COG3889 Predicted solute bindi 24.4 1E+02 0.0022 33.9 4.5 11 306-316 856-866 (872)
90 PRK14948 DNA polymerase III su 24.0 2.2E+02 0.0047 30.5 6.9 8 240-247 506-513 (620)
91 smart00495 ChtBD3 Chitin-bindi 23.8 48 0.001 21.9 1.3 18 46-63 1-18 (41)
92 PF10377 ATG11: Autophagy-rela 22.5 55 0.0012 27.8 1.7 18 172-189 41-58 (129)
93 TIGR01653 lactococcin_972 bact 22.3 1.2E+02 0.0026 24.5 3.5 17 1-17 1-17 (92)
94 PLN02991 oxidoreductase 22.2 2.9E+02 0.0064 29.1 7.3 79 52-130 60-148 (543)
95 KOG3671 Actin regulatory prote 22.1 1.6E+02 0.0034 30.9 5.1 8 115-122 138-145 (569)
96 PRK09752 adhesin; Provisional 21.3 99 0.0022 35.6 3.8 17 177-193 838-855 (1250)
97 MTH00140 COX2 cytochrome c oxi 21.0 1.1E+02 0.0024 28.3 3.5 30 98-129 183-215 (228)
98 PF10377 ATG11: Autophagy-rela 20.9 64 0.0014 27.4 1.8 18 53-70 41-58 (129)
99 PLN00044 multi-copper oxidase- 20.7 3.5E+02 0.0076 28.9 7.6 41 211-251 496-538 (596)
100 PTZ00047 cytochrome c oxidase 20.1 1.5E+02 0.0032 26.4 4.0 30 217-248 116-148 (162)
No 1
>PLN03148 Blue copper-like protein; Provisional
Probab=100.00 E-value=4.1e-39 Score=282.35 Aligned_cols=106 Identities=35% Similarity=0.661 Sum_probs=98.9
Q ss_pred ccccceEEEeeCCCCCcCCCCCCcCcccccCCCeeEeCCEEEEEecCCCccEEEeCcccccccCCCCCCCccCCCCcEEE
Q 020799 21 NTAAETTHVVGGDLGWQIPPGGAIAYVTWASMQTFSVGDILLFNFTTGQQDVASVTKEAYENCNPASPISRKTTGPAEFS 100 (321)
Q Consensus 21 ~~aaa~~~~VGg~~GW~~~~~~~~~Y~~Was~~~F~vGD~LvF~y~~~~hsV~~v~~~~Y~~C~~~~~~~~~~~G~~~v~ 100 (321)
..+++++|+|||+.||+. +.+|++|+++++|+|||+|+|+|++++|||+||++++|++|+..+++..+++|++.|+
T Consensus 16 ~~~~a~~~~VGd~~GW~~----~~~Y~~WA~~k~F~VGD~LvF~Y~~~~hnV~~V~~~~Y~~C~~~~pi~~~tsG~d~v~ 91 (167)
T PLN03148 16 SATTATDHIVGANKGWNP----GINYTLWANNQTFYVGDLISFRYQKTQYNVFEVNQTGYDNCTTEGAAGNWTSGKDFIP 91 (167)
T ss_pred hhccceEEEeCCCCCcCC----CCChhHhhcCCCCccCCEEEEEecCCCceEEEEChHHcCcccCCCCcceecCCCcEEE
Confidence 456778999999999984 3579999999999999999999999999999999999999999999999999999999
Q ss_pred ecccccEEEEecCccccccCceeEEEecCCC
Q 020799 101 LEAAGDYYFICTLELHCTLGQKLAIHVTGPA 131 (321)
Q Consensus 101 L~~~G~~yFic~~~~HC~~GmKl~I~V~~~~ 131 (321)
|+++|++||||+ .+||++||||+|+|...+
T Consensus 92 L~~~G~~YFIcg-~ghC~~GmKl~I~V~~~~ 121 (167)
T PLN03148 92 LNKAKRYYFICG-NGQCFNGMKVTILVHPLP 121 (167)
T ss_pred ecCCccEEEEcC-CCccccCCEEEEEEcCCC
Confidence 999999999999 589999999999998643
No 2
>PLN03148 Blue copper-like protein; Provisional
Probab=100.00 E-value=2.2e-37 Score=271.50 Aligned_cols=103 Identities=27% Similarity=0.489 Sum_probs=96.9
Q ss_pred CCCceeeeecCccccccCCCCCcccccccccceeEeCCEEEEeecCCCCcEEEeCccccccccCCCCcccccCCCeEEEe
Q 020799 141 PRTPVNYTVGGNIGWAIPPGGALFYASWASFYSFFVCDTLVFNFANGTQDVAIVPKDVYETCNINSTIAVFTSSPVKITL 220 (321)
Q Consensus 141 ~ssa~~~~VGg~~gW~~~~~~~~~Y~~Wa~~~~F~vGD~LvF~y~~~~h~V~~V~~~~y~~C~~~~p~~~~~~G~~~v~L 220 (321)
...+++|+|||+.||+. ..+|++|+++++|+|||+|+|+|+++.|||+||++++|++|+.++++..|++|++.|+|
T Consensus 17 ~~~a~~~~VGd~~GW~~----~~~Y~~WA~~k~F~VGD~LvF~Y~~~~hnV~~V~~~~Y~~C~~~~pi~~~tsG~d~v~L 92 (167)
T PLN03148 17 ATTATDHIVGANKGWNP----GINYTLWANNQTFYVGDLISFRYQKTQYNVFEVNQTGYDNCTTEGAAGNWTSGKDFIPL 92 (167)
T ss_pred hccceEEEeCCCCCcCC----CCChhHhhcCCCCccCCEEEEEecCCCceEEEEChHHcCcccCCCCcceecCCCcEEEe
Confidence 35678999999999984 24799999999999999999999999999999999999999999999999999999999
Q ss_pred ecCeeEEEEcCCCCCCCCCCeEEEEEeC
Q 020799 221 KFPGEYYFTSTYLSHCSLGQRLAINVTG 248 (321)
Q Consensus 221 ~~~G~~yFic~~~~HC~~GmKl~I~V~~ 248 (321)
+++|+|||||+ .+||++||||.|+|..
T Consensus 93 ~~~G~~YFIcg-~ghC~~GmKl~I~V~~ 119 (167)
T PLN03148 93 NKAKRYYFICG-NGQCFNGMKVTILVHP 119 (167)
T ss_pred cCCccEEEEcC-CCccccCCEEEEEEcC
Confidence 99999999999 6999999999999953
No 3
>PF02298 Cu_bind_like: Plastocyanin-like domain; InterPro: IPR003245 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved. This domain is found in a variety of plant cyanins and pollern allergen. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 3.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1JER_A 1WS7_A 1WS8_D 1F56_B 1X9R_B 1X9U_A 2CBP_A.
Probab=99.96 E-value=1.3e-30 Score=206.00 Aligned_cols=85 Identities=39% Similarity=0.720 Sum_probs=70.8
Q ss_pred cccCCCCCcccccccccceeEeCCEEEEeecCCCCcEEEeCccccccccCCCCcccccCCCeEEEeecCeeEEEEcCCCC
Q 020799 155 WAIPPGGALFYASWASFYSFFVCDTLVFNFANGTQDVAIVPKDVYETCNINSTIAVFTSSPVKITLKFPGEYYFTSTYLS 234 (321)
Q Consensus 155 W~~~~~~~~~Y~~Wa~~~~F~vGD~LvF~y~~~~h~V~~V~~~~y~~C~~~~p~~~~~~G~~~v~L~~~G~~yFic~~~~ 234 (321)
|+++.+. .+|++||++++|+|||+|+|+|+++.|+|+||++++|++|+.++++..+++|+++|+|+++|++||||++++
T Consensus 1 W~~~~~~-~~Y~~Wa~~~~F~vGD~LvF~y~~~~h~V~~V~~~~y~~C~~~~~~~~~~~G~~~v~L~~~G~~YFic~~~~ 79 (85)
T PF02298_consen 1 WTIPTNA-SNYTDWASGKTFRVGDTLVFNYDSGQHSVVEVSKADYDSCNSSNPISTYSTGNDTVTLTKPGPHYFICGVPG 79 (85)
T ss_dssp SSSSSST-THHHHHHCTS-BETTEEEEEE--TTTB-EEEESHHHHHHT--STTSEEE-SSEEEEEE-SSEEEEEE--STT
T ss_pred CccCCCc-cchhHhhcCCcEeCCCEEEEEecCCCCeEEecChhhCccCCCCCceecccCCCEEEEeCCCcCeEEEeCCCC
Confidence 8887654 699999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 020799 235 HCSLGQ 240 (321)
Q Consensus 235 HC~~Gm 240 (321)
||++||
T Consensus 80 HC~~Gq 85 (85)
T PF02298_consen 80 HCQKGQ 85 (85)
T ss_dssp TTTTT-
T ss_pred cccccC
Confidence 999998
No 4
>PF02298 Cu_bind_like: Plastocyanin-like domain; InterPro: IPR003245 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved. This domain is found in a variety of plant cyanins and pollern allergen. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 3.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1JER_A 1WS7_A 1WS8_D 1F56_B 1X9R_B 1X9U_A 2CBP_A.
Probab=99.96 E-value=2.8e-30 Score=204.15 Aligned_cols=85 Identities=46% Similarity=0.902 Sum_probs=70.7
Q ss_pred CcCCCCCCcCcccccCCCeeEeCCEEEEEecCCCccEEEeCcccccccCCCCCCCccCCCCcEEEecccccEEEEecCcc
Q 020799 36 WQIPPGGAIAYVTWASMQTFSVGDILLFNFTTGQQDVASVTKEAYENCNPASPISRKTTGPAEFSLEAAGDYYFICTLEL 115 (321)
Q Consensus 36 W~~~~~~~~~Y~~Was~~~F~vGD~LvF~y~~~~hsV~~v~~~~Y~~C~~~~~~~~~~~G~~~v~L~~~G~~yFic~~~~ 115 (321)
|+++.+ ..+|++||++++|+|||+|+|+|++++|+|+||++++|++|+..+++..+.+|++.|+|+++|++||||++++
T Consensus 1 W~~~~~-~~~Y~~Wa~~~~F~vGD~LvF~y~~~~h~V~~V~~~~y~~C~~~~~~~~~~~G~~~v~L~~~G~~YFic~~~~ 79 (85)
T PF02298_consen 1 WTIPTN-ASNYTDWASGKTFRVGDTLVFNYDSGQHSVVEVSKADYDSCNSSNPISTYSTGNDTVTLTKPGPHYFICGVPG 79 (85)
T ss_dssp SSSSSS-TTHHHHHHCTS-BETTEEEEEE--TTTB-EEEESHHHHHHT--STTSEEE-SSEEEEEE-SSEEEEEE--STT
T ss_pred CccCCC-ccchhHhhcCCcEeCCCEEEEEecCCCCeEEecChhhCccCCCCCceecccCCCEEEEeCCCcCeEEEeCCCC
Confidence 888765 3799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCc
Q 020799 116 HCTLGQ 121 (321)
Q Consensus 116 HC~~Gm 121 (321)
||++||
T Consensus 80 HC~~Gq 85 (85)
T PF02298_consen 80 HCQKGQ 85 (85)
T ss_dssp TTTTT-
T ss_pred cccccC
Confidence 999998
No 5
>PRK02710 plastocyanin; Provisional
Probab=98.49 E-value=1.6e-06 Score=72.37 Aligned_cols=70 Identities=19% Similarity=0.204 Sum_probs=49.0
Q ss_pred CCeeEeCCEEEEEe-cCCCccEEEeCcccccccCCCCCCCccCCC-CcEEEecccccEEEEecCccccccCceeEEEec
Q 020799 52 MQTFSVGDILLFNF-TTGQQDVASVTKEAYENCNPASPISRKTTG-PAEFSLEAAGDYYFICTLELHCTLGQKLAIHVT 128 (321)
Q Consensus 52 ~~~F~vGD~LvF~y-~~~~hsV~~v~~~~Y~~C~~~~~~~~~~~G-~~~v~L~~~G~~yFic~~~~HC~~GmKl~I~V~ 128 (321)
..++++||+|.|.- +...|++.--.. +..... . .....| ..+++++++|.|-|+|. .|=+.|||..|.|.
T Consensus 48 ~i~v~~Gd~V~~~N~~~~~H~v~~~~~---~~~~~~-~-~~~~pg~t~~~tF~~~G~y~y~C~--~H~~~gM~G~I~V~ 119 (119)
T PRK02710 48 TLTIKAGDTVKWVNNKLAPHNAVFDGA---KELSHK-D-LAFAPGESWEETFSEAGTYTYYCE--PHRGAGMVGKITVE 119 (119)
T ss_pred EEEEcCCCEEEEEECCCCCceEEecCC---cccccc-c-cccCCCCEEEEEecCCEEEEEEcC--CCccCCcEEEEEEC
Confidence 56899999999976 346899863211 111111 1 112334 35888999999999999 69999999999984
No 6
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=98.33 E-value=2e-06 Score=69.28 Aligned_cols=76 Identities=20% Similarity=0.219 Sum_probs=55.2
Q ss_pred ccceeEeCCEEEEee-cCCCCcEEEeCcc--ccccccCCC---CcccccCCC-eEEEeecCeeEEEEcCCCCCCCCCCeE
Q 020799 170 SFYSFFVCDTLVFNF-ANGTQDVAIVPKD--VYETCNINS---TIAVFTSSP-VKITLKFPGEYYFTSTYLSHCSLGQRL 242 (321)
Q Consensus 170 ~~~~F~vGD~LvF~y-~~~~h~V~~V~~~--~y~~C~~~~---p~~~~~~G~-~~v~L~~~G~~yFic~~~~HC~~GmKl 242 (321)
+..++++||+|.|.. +...|++...+.. .-..+.... .......|. ..++++++|.|.|+|. + |...||+.
T Consensus 17 ~~i~V~~G~tV~~~n~~~~~Hnv~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~tF~~~G~y~y~C~-P-H~~~GM~G 94 (99)
T PF00127_consen 17 SEITVKAGDTVTFVNNDSMPHNVVFVADGMPAGADSDYVPPGDSSPLLAPGETYSVTFTKPGTYEYYCT-P-HYEAGMVG 94 (99)
T ss_dssp SEEEEETTEEEEEEEESSSSBEEEEETTSSHTTGGHCHHSTTCEEEEBSTTEEEEEEEESSEEEEEEET-T-TGGTTSEE
T ss_pred CEEEECCCCEEEEEECCCCCceEEEecccccccccccccCccccceecCCCCEEEEEeCCCeEEEEEcC-C-CcccCCEE
Confidence 468999999999999 5788999988622 011111111 112234454 4788999999999999 8 99999999
Q ss_pred EEEEe
Q 020799 243 AINVT 247 (321)
Q Consensus 243 ~I~V~ 247 (321)
.|+|.
T Consensus 95 ~i~V~ 99 (99)
T PF00127_consen 95 TIIVE 99 (99)
T ss_dssp EEEEE
T ss_pred EEEEC
Confidence 99984
No 7
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=98.13 E-value=9.6e-06 Score=65.32 Aligned_cols=75 Identities=23% Similarity=0.298 Sum_probs=53.7
Q ss_pred CCeeEeCCEEEEEe-cCCCccEEEeCcc--cccccCCCCC---CCccCCCC-cEEEecccccEEEEecCccccccCceeE
Q 020799 52 MQTFSVGDILLFNF-TTGQQDVASVTKE--AYENCNPASP---ISRKTTGP-AEFSLEAAGDYYFICTLELHCTLGQKLA 124 (321)
Q Consensus 52 ~~~F~vGD~LvF~y-~~~~hsV~~v~~~--~Y~~C~~~~~---~~~~~~G~-~~v~L~~~G~~yFic~~~~HC~~GmKl~ 124 (321)
..++++||+|.|.. +...|++...... .-..+..... ......|. ..++++++|.|.|+|. + |...||+-.
T Consensus 18 ~i~V~~G~tV~~~n~~~~~Hnv~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~tF~~~G~y~y~C~-P-H~~~GM~G~ 95 (99)
T PF00127_consen 18 EITVKAGDTVTFVNNDSMPHNVVFVADGMPAGADSDYVPPGDSSPLLAPGETYSVTFTKPGTYEYYCT-P-HYEAGMVGT 95 (99)
T ss_dssp EEEEETTEEEEEEEESSSSBEEEEETTSSHTTGGHCHHSTTCEEEEBSTTEEEEEEEESSEEEEEEET-T-TGGTTSEEE
T ss_pred EEEECCCCEEEEEECCCCCceEEEecccccccccccccCccccceecCCCCEEEEEeCCCeEEEEEcC-C-CcccCCEEE
Confidence 56899999999998 5779999988521 0111211111 11233444 4788889999999999 8 999999999
Q ss_pred EEec
Q 020799 125 IHVT 128 (321)
Q Consensus 125 I~V~ 128 (321)
|.|.
T Consensus 96 i~V~ 99 (99)
T PF00127_consen 96 IIVE 99 (99)
T ss_dssp EEEE
T ss_pred EEEC
Confidence 9984
No 8
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=98.10 E-value=2.3e-05 Score=63.24 Aligned_cols=76 Identities=18% Similarity=0.204 Sum_probs=51.6
Q ss_pred ccceeEeCCEEEEeec-CCCCcEEEeCcc--c---cccccCCCCcccccCCC-eEEEeecCeeEEEEcCCCCCCCCCCeE
Q 020799 170 SFYSFFVCDTLVFNFA-NGTQDVAIVPKD--V---YETCNINSTIAVFTSSP-VKITLKFPGEYYFTSTYLSHCSLGQRL 242 (321)
Q Consensus 170 ~~~~F~vGD~LvF~y~-~~~h~V~~V~~~--~---y~~C~~~~p~~~~~~G~-~~v~L~~~G~~yFic~~~~HC~~GmKl 242 (321)
+..++++||+|.|..+ ...|++...+.. + ...............|. ..++++.+|.|.|+|. +|+++||+.
T Consensus 17 ~~i~v~~G~~V~~~N~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~pG~t~~~tF~~~G~y~y~C~--~H~~aGM~G 94 (99)
T TIGR02656 17 AKISIAAGDTVEWVNNKGGPHNVVFDEDAVPAGVKELAKSLSHKDLLNSPGESYEVTFSTPGTYTFYCE--PHRGAGMVG 94 (99)
T ss_pred CEEEECCCCEEEEEECCCCCceEEECCCCCccchhhhcccccccccccCCCCEEEEEeCCCEEEEEEcC--CccccCCEE
Confidence 4689999999999965 367999864321 0 00011100011223344 4788999999999999 999999999
Q ss_pred EEEEe
Q 020799 243 AINVT 247 (321)
Q Consensus 243 ~I~V~ 247 (321)
.|.|.
T Consensus 95 ~I~V~ 99 (99)
T TIGR02656 95 KITVE 99 (99)
T ss_pred EEEEC
Confidence 99984
No 9
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=97.99 E-value=4.2e-05 Score=61.71 Aligned_cols=90 Identities=19% Similarity=0.219 Sum_probs=57.9
Q ss_pred EEEeeC-CCCCcCCCCCCcCcccccCCCeeEeCCEEEEEec-CCCccEEEeCccc-----ccccCCCCCCCccCCCC-cE
Q 020799 27 THVVGG-DLGWQIPPGGAIAYVTWASMQTFSVGDILLFNFT-TGQQDVASVTKEA-----YENCNPASPISRKTTGP-AE 98 (321)
Q Consensus 27 ~~~VGg-~~GW~~~~~~~~~Y~~Was~~~F~vGD~LvF~y~-~~~hsV~~v~~~~-----Y~~C~~~~~~~~~~~G~-~~ 98 (321)
+..+|. +.+-.+.|+ ..++++||+|.|... ...|+++..+... ...............|. ..
T Consensus 2 ~v~~g~~~g~~~F~P~----------~i~v~~G~~V~~~N~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~pG~t~~ 71 (99)
T TIGR02656 2 TVKMGADKGALVFEPA----------KISIAAGDTVEWVNNKGGPHNVVFDEDAVPAGVKELAKSLSHKDLLNSPGESYE 71 (99)
T ss_pred EEEEecCCCceeEeCC----------EEEECCCCEEEEEECCCCCceEEECCCCCccchhhhcccccccccccCCCCEEE
Confidence 345664 334666553 578999999999854 3579998643210 00011100001122343 57
Q ss_pred EEecccccEEEEecCccccccCceeEEEec
Q 020799 99 FSLEAAGDYYFICTLELHCTLGQKLAIHVT 128 (321)
Q Consensus 99 v~L~~~G~~yFic~~~~HC~~GmKl~I~V~ 128 (321)
++++.+|.|-|+|. .|++.||+..|.|.
T Consensus 72 ~tF~~~G~y~y~C~--~H~~aGM~G~I~V~ 99 (99)
T TIGR02656 72 VTFSTPGTYTFYCE--PHRGAGMVGKITVE 99 (99)
T ss_pred EEeCCCEEEEEEcC--CccccCCEEEEEEC
Confidence 88889999999999 79999999999884
No 10
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=97.87 E-value=0.00012 Score=61.22 Aligned_cols=88 Identities=25% Similarity=0.335 Sum_probs=60.5
Q ss_pred CceeeeecC--cc-ccccCCCCCcccccccccceeEeCCEEEEeecC--CCCcEEEeCccccccccCCCCcccccCC-Ce
Q 020799 143 TPVNYTVGG--NI-GWAIPPGGALFYASWASFYSFFVCDTLVFNFAN--GTQDVAIVPKDVYETCNINSTIAVFTSS-PV 216 (321)
Q Consensus 143 sa~~~~VGg--~~-gW~~~~~~~~~Y~~Wa~~~~F~vGD~LvF~y~~--~~h~V~~V~~~~y~~C~~~~p~~~~~~G-~~ 216 (321)
...++.||. .. +..+.| +..++++||+|.|+++. ..|+|.-.....|+. . ......| ..
T Consensus 22 ~~~~v~~G~~~~~g~~~F~P----------~~ltV~~GdTVtw~~~~d~~~HnV~s~~~~~f~s----~-~~~~~~G~t~ 86 (115)
T TIGR03102 22 DEVTVDVGAEANGGGFAFDP----------PAIRVDPGTTVVWEWTGEGGGHNVVSDGDGDLDE----S-ERVSEEGTTY 86 (115)
T ss_pred ceEEEEecccCCCCceeEeC----------CEEEECCCCEEEEEECCCCCCEEEEECCCCCccc----c-ccccCCCCEE
Confidence 445678872 22 244433 45899999999999864 679997533233441 1 1112234 45
Q ss_pred EEEeecCeeEEEEcCCCCCCCCCCeEEEEEe
Q 020799 217 KITLKFPGEYYFTSTYLSHCSLGQRLAINVT 247 (321)
Q Consensus 217 ~v~L~~~G~~yFic~~~~HC~~GmKl~I~V~ 247 (321)
.++++++|.|-|+|. -|=..|||-.|.|.
T Consensus 87 s~Tf~~~G~Y~Y~C~--pH~~~gM~G~I~V~ 115 (115)
T TIGR03102 87 EHTFEEPGIYLYVCV--PHEALGMKGAVVVE 115 (115)
T ss_pred EEEecCCcEEEEEcc--CCCCCCCEEEEEEC
Confidence 899999999999998 68778999999983
No 11
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=97.87 E-value=8.7e-05 Score=62.04 Aligned_cols=88 Identities=26% Similarity=0.425 Sum_probs=61.0
Q ss_pred cceEEEee--CC-CCCcCCCCCCcCcccccCCCeeEeCCEEEEEecC--CCccEEEeCcccccccCCCCCCCccCCC-Cc
Q 020799 24 AETTHVVG--GD-LGWQIPPGGAIAYVTWASMQTFSVGDILLFNFTT--GQQDVASVTKEAYENCNPASPISRKTTG-PA 97 (321)
Q Consensus 24 aa~~~~VG--g~-~GW~~~~~~~~~Y~~Was~~~F~vGD~LvF~y~~--~~hsV~~v~~~~Y~~C~~~~~~~~~~~G-~~ 97 (321)
...+..|| ++ .+..+.|. ..++++||+|.|+.+. ..|+|.-.....|+. .......| ..
T Consensus 22 ~~~~v~~G~~~~~g~~~F~P~----------~ltV~~GdTVtw~~~~d~~~HnV~s~~~~~f~s-----~~~~~~~G~t~ 86 (115)
T TIGR03102 22 DEVTVDVGAEANGGGFAFDPP----------AIRVDPGTTVVWEWTGEGGGHNVVSDGDGDLDE-----SERVSEEGTTY 86 (115)
T ss_pred ceEEEEecccCCCCceeEeCC----------EEEECCCCEEEEEECCCCCCEEEEECCCCCccc-----cccccCCCCEE
Confidence 44567788 22 23556552 5699999999999753 579998543333431 11112233 46
Q ss_pred EEEecccccEEEEecCccccccCceeEEEec
Q 020799 98 EFSLEAAGDYYFICTLELHCTLGQKLAIHVT 128 (321)
Q Consensus 98 ~v~L~~~G~~yFic~~~~HC~~GmKl~I~V~ 128 (321)
.++++++|.|-|+|.. |=..|||-.|.|.
T Consensus 87 s~Tf~~~G~Y~Y~C~p--H~~~gM~G~I~V~ 115 (115)
T TIGR03102 87 EHTFEEPGIYLYVCVP--HEALGMKGAVVVE 115 (115)
T ss_pred EEEecCCcEEEEEccC--CCCCCCEEEEEEC
Confidence 8999999999999995 8788999999984
No 12
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=97.78 E-value=0.00014 Score=60.96 Aligned_cols=76 Identities=17% Similarity=0.189 Sum_probs=54.9
Q ss_pred cccceeEeCCEEEEeecCCCCcEEEeCccccccccCCCCcccccCCCeEEEeecCeeEEEEcCCCCCCCCCCeEEEEEeC
Q 020799 169 ASFYSFFVCDTLVFNFANGTQDVAIVPKDVYETCNINSTIAVFTSSPVKITLKFPGEYYFTSTYLSHCSLGQRLAINVTG 248 (321)
Q Consensus 169 a~~~~F~vGD~LvF~y~~~~h~V~~V~~~~y~~C~~~~p~~~~~~G~~~v~L~~~G~~yFic~~~~HC~~GmKl~I~V~~ 248 (321)
.+..++++||+|.|.+....|+|.......-+. ......-.+....++++++|.|-|+|. .|=..||+..|+|..
T Consensus 14 P~~v~V~~GdTV~f~n~d~~Hnv~~~~~~~p~g---~~~~~s~~g~~~~~tF~~~G~Y~Y~C~--pH~~~GM~G~V~Vg~ 88 (116)
T TIGR02375 14 PAYIRAAPGDTVTFVPTDKGHNVETIKGMIPEG---AEAFKSKINEEYTVTVTEEGVYGVKCT--PHYGMGMVALIQVGD 88 (116)
T ss_pred CCEEEECCCCEEEEEECCCCeeEEEccCCCcCC---cccccCCCCCEEEEEeCCCEEEEEEcC--CCccCCCEEEEEECC
Confidence 356899999999999987789988643211000 011111112345899999999999999 899999999999987
Q ss_pred C
Q 020799 249 T 249 (321)
Q Consensus 249 ~ 249 (321)
.
T Consensus 89 ~ 89 (116)
T TIGR02375 89 P 89 (116)
T ss_pred C
Confidence 4
No 13
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=97.78 E-value=0.00017 Score=61.36 Aligned_cols=69 Identities=26% Similarity=0.381 Sum_probs=53.0
Q ss_pred CCeeEeCCEEEEEecCC-CccEEEeCcccccccCCCCCCCccCCC---CcEEEecccccEEEEecCccccccCceeEEEe
Q 020799 52 MQTFSVGDILLFNFTTG-QQDVASVTKEAYENCNPASPISRKTTG---PAEFSLEAAGDYYFICTLELHCTLGQKLAIHV 127 (321)
Q Consensus 52 ~~~F~vGD~LvF~y~~~-~hsV~~v~~~~Y~~C~~~~~~~~~~~G---~~~v~L~~~G~~yFic~~~~HC~~GmKl~I~V 127 (321)
..++++||++.|.+... .|||.-.... .. .....+..+ ..+++++++|.|.|+|.- |=..|||-.|.|
T Consensus 55 ~v~v~pGDTVtw~~~d~~~Hnv~~~~~~-----~~-~g~~~~~~~~~~s~~~Tfe~~G~Y~Y~C~P--H~~~gM~G~IvV 126 (128)
T COG3794 55 EVTVKPGDTVTWVNTDSVGHNVTAVGGM-----DP-EGSGTLKAGINESFTHTFETPGEYTYYCTP--HPGMGMKGKIVV 126 (128)
T ss_pred EEEECCCCEEEEEECCCCCceEEEeCCC-----Cc-ccccccccCCCcceEEEecccceEEEEecc--CCCCCcEEEEEe
Confidence 67999999999998876 9999987443 11 111122222 358889999999999996 899999999998
Q ss_pred c
Q 020799 128 T 128 (321)
Q Consensus 128 ~ 128 (321)
.
T Consensus 127 ~ 127 (128)
T COG3794 127 G 127 (128)
T ss_pred C
Confidence 6
No 14
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=97.73 E-value=0.00016 Score=61.60 Aligned_cols=70 Identities=20% Similarity=0.217 Sum_probs=53.7
Q ss_pred ccceeEeCCEEEEeecCC-CCcEEEeCccccccccCCCCcccccCC---CeEEEeecCeeEEEEcCCCCCCCCCCeEEEE
Q 020799 170 SFYSFFVCDTLVFNFANG-TQDVAIVPKDVYETCNINSTIAVFTSS---PVKITLKFPGEYYFTSTYLSHCSLGQRLAIN 245 (321)
Q Consensus 170 ~~~~F~vGD~LvF~y~~~-~h~V~~V~~~~y~~C~~~~p~~~~~~G---~~~v~L~~~G~~yFic~~~~HC~~GmKl~I~ 245 (321)
+..+..+||+|.|.+... .|||.-....+. .-...+..+ ..+.+++++|.|.|+|. -|=..|||-.|+
T Consensus 54 A~v~v~pGDTVtw~~~d~~~Hnv~~~~~~~~------~g~~~~~~~~~~s~~~Tfe~~G~Y~Y~C~--PH~~~gM~G~Iv 125 (128)
T COG3794 54 AEVTVKPGDTVTWVNTDSVGHNVTAVGGMDP------EGSGTLKAGINESFTHTFETPGEYTYYCT--PHPGMGMKGKIV 125 (128)
T ss_pred cEEEECCCCEEEEEECCCCCceEEEeCCCCc------ccccccccCCCcceEEEecccceEEEEec--cCCCCCcEEEEE
Confidence 578999999999999877 999998754411 001122222 34789999999999997 488999999999
Q ss_pred Ee
Q 020799 246 VT 247 (321)
Q Consensus 246 V~ 247 (321)
|.
T Consensus 126 V~ 127 (128)
T COG3794 126 VG 127 (128)
T ss_pred eC
Confidence 85
No 15
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=97.72 E-value=0.00015 Score=60.69 Aligned_cols=74 Identities=23% Similarity=0.288 Sum_probs=53.9
Q ss_pred CCeeEeCCEEEEEecCCCccEEEeCcccccccCCCCCCCccCCCCcEEEecccccEEEEecCccccccCceeEEEecCC
Q 020799 52 MQTFSVGDILLFNFTTGQQDVASVTKEAYENCNPASPISRKTTGPAEFSLEAAGDYYFICTLELHCTLGQKLAIHVTGP 130 (321)
Q Consensus 52 ~~~F~vGD~LvF~y~~~~hsV~~v~~~~Y~~C~~~~~~~~~~~G~~~v~L~~~G~~yFic~~~~HC~~GmKl~I~V~~~ 130 (321)
..++++||+|.|......|+|..+....-+. .+.+..-.+...+++++++|.|-|.|. .|=..||+-.|.|..+
T Consensus 16 ~v~V~~GdTV~f~n~d~~Hnv~~~~~~~p~g---~~~~~s~~g~~~~~tF~~~G~Y~Y~C~--pH~~~GM~G~V~Vg~~ 89 (116)
T TIGR02375 16 YIRAAPGDTVTFVPTDKGHNVETIKGMIPEG---AEAFKSKINEEYTVTVTEEGVYGVKCT--PHYGMGMVALIQVGDP 89 (116)
T ss_pred EEEECCCCEEEEEECCCCeeEEEccCCCcCC---cccccCCCCCEEEEEeCCCEEEEEEcC--CCccCCCEEEEEECCC
Confidence 5789999999999987789988642211111 111111123346889999999999999 6999999999999874
No 16
>PRK02710 plastocyanin; Provisional
Probab=97.44 E-value=0.00071 Score=56.47 Aligned_cols=72 Identities=15% Similarity=0.116 Sum_probs=51.2
Q ss_pred cccceeEeCCEEEEeec-CCCCcEEEeCccccccccCCCCcccccCC-CeEEEeecCeeEEEEcCCCCCCCCCCeEEEEE
Q 020799 169 ASFYSFFVCDTLVFNFA-NGTQDVAIVPKDVYETCNINSTIAVFTSS-PVKITLKFPGEYYFTSTYLSHCSLGQRLAINV 246 (321)
Q Consensus 169 a~~~~F~vGD~LvF~y~-~~~h~V~~V~~~~y~~C~~~~p~~~~~~G-~~~v~L~~~G~~yFic~~~~HC~~GmKl~I~V 246 (321)
.+..++++||+|.|... ...|++.--..+. . +........| ..+++++++|.|-|+|. +|=+.|||..|+|
T Consensus 46 P~~i~v~~Gd~V~~~N~~~~~H~v~~~~~~~---~--~~~~~~~~pg~t~~~tF~~~G~y~y~C~--~H~~~gM~G~I~V 118 (119)
T PRK02710 46 PSTLTIKAGDTVKWVNNKLAPHNAVFDGAKE---L--SHKDLAFAPGESWEETFSEAGTYTYYCE--PHRGAGMVGKITV 118 (119)
T ss_pred CCEEEEcCCCEEEEEECCCCCceEEecCCcc---c--cccccccCCCCEEEEEecCCEEEEEEcC--CCccCCcEEEEEE
Confidence 45789999999999864 4679986422111 1 0111123344 35789999999999999 8999999999998
Q ss_pred e
Q 020799 247 T 247 (321)
Q Consensus 247 ~ 247 (321)
.
T Consensus 119 ~ 119 (119)
T PRK02710 119 E 119 (119)
T ss_pred C
Confidence 3
No 17
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=97.43 E-value=0.0012 Score=57.45 Aligned_cols=107 Identities=18% Similarity=0.208 Sum_probs=67.0
Q ss_pred ccCceeEEEecCCCCCCCCCCCCCCCceeeeecCccccccCCCCCcccccccccceeEeCCEEEEeecCC----CCcEEE
Q 020799 118 TLGQKLAIHVTGPAPQPSPGPSLPRTPVNYTVGGNIGWAIPPGGALFYASWASFYSFFVCDTLVFNFANG----TQDVAI 193 (321)
Q Consensus 118 ~~GmKl~I~V~~~~p~p~p~~~p~ssa~~~~VGg~~gW~~~~~~~~~Y~~Wa~~~~F~vGD~LvF~y~~~----~h~V~~ 193 (321)
..|-|+.|...+..|.++ ...|.|-+..+. ..+++.||+|.|...+. .|....
T Consensus 23 ~~g~~v~v~~~~~~~~~~--------~~~f~~~~~~~P---------------~I~v~~Gd~V~v~v~N~~~~~~H~~~I 79 (148)
T TIGR03095 23 YNNSTTLVVAAGPMPGPS--------MYSFEIHDLKNP---------------TIVIPEGVTVHFTVINTDTDSGHNFDI 79 (148)
T ss_pred EcCCEEEEEEEEcCCCCC--------ceeEEecCCCCC---------------EEEEcCCCEEEEEEEeCCCCccccEEe
Confidence 466788777766544332 235666443332 36889999999988653 566666
Q ss_pred eCcc-ccc------------cccCCCCcc--cccCCCeEEEeecCeeEEEEcCCCCCCCCCCeEEEEEe
Q 020799 194 VPKD-VYE------------TCNINSTIA--VFTSSPVKITLKFPGEYYFTSTYLSHCSLGQRLAINVT 247 (321)
Q Consensus 194 V~~~-~y~------------~C~~~~p~~--~~~~G~~~v~L~~~G~~yFic~~~~HC~~GmKl~I~V~ 247 (321)
.++. .+. .|....+.. .+.....+++++++|+|||.|.+++|=+.||+-.|.|.
T Consensus 80 ~~~g~~~~~~p~mdG~~~~~~~~i~p~~~~g~~~~~~~tf~f~~aGtywyhC~~pgH~~~GM~G~iiV~ 148 (148)
T TIGR03095 80 SKRGPPYPYMPGMDGLGFVAGTGFLPPPKSGKFGYTDFTYHFSTAGTYWYLCTYPGHAENGMYGKIVVK 148 (148)
T ss_pred ecCCCccccccccCCCCccccCcccCCCCCCccceeEEEEECCCCeEEEEEcCChhHHHCCCEEEEEEC
Confidence 5422 110 121111111 01112447788899999999999999999999988873
No 18
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=97.03 E-value=0.0039 Score=48.55 Aligned_cols=71 Identities=17% Similarity=0.139 Sum_probs=48.5
Q ss_pred ccceeEeCCEEEEeecC-CCCcEEEeCccccccccCCCCcccccCCC-eEEEeecCeeEEEEcCCCCCCCCCCeEEEEEe
Q 020799 170 SFYSFFVCDTLVFNFAN-GTQDVAIVPKDVYETCNINSTIAVFTSSP-VKITLKFPGEYYFTSTYLSHCSLGQRLAINVT 247 (321)
Q Consensus 170 ~~~~F~vGD~LvF~y~~-~~h~V~~V~~~~y~~C~~~~p~~~~~~G~-~~v~L~~~G~~yFic~~~~HC~~GmKl~I~V~ 247 (321)
+..+.++||+|.|+... ..|+|.-.+..+-+ =.... .....|. .+++++++|+|-|.|.... +||-.|.|.
T Consensus 11 ~~i~v~~GdtVt~~N~d~~~Hnv~~~~g~~~~-~~~~~--~~~~~g~~~~~tf~~~G~y~y~C~~Hp----~M~G~v~V~ 83 (83)
T TIGR02657 11 PELHVKVGDTVTWINREAMPHNVHFVAGVLGE-AALKG--PMMKKEQAYSLTFTEAGTYDYHCTPHP----FMRGKVVVE 83 (83)
T ss_pred CEEEECCCCEEEEEECCCCCccEEecCCCCcc-ccccc--cccCCCCEEEEECCCCEEEEEEcCCCC----CCeEEEEEC
Confidence 45789999999999874 47999865422111 00111 1123343 4799999999999999855 499999874
No 19
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=96.55 E-value=0.012 Score=45.73 Aligned_cols=70 Identities=17% Similarity=0.173 Sum_probs=47.0
Q ss_pred CCeeEeCCEEEEEecC-CCccEEEeCcccccccCCCCCCCccCCC-CcEEEecccccEEEEecCccccccCceeEEEec
Q 020799 52 MQTFSVGDILLFNFTT-GQQDVASVTKEAYENCNPASPISRKTTG-PAEFSLEAAGDYYFICTLELHCTLGQKLAIHVT 128 (321)
Q Consensus 52 ~~~F~vGD~LvF~y~~-~~hsV~~v~~~~Y~~C~~~~~~~~~~~G-~~~v~L~~~G~~yFic~~~~HC~~GmKl~I~V~ 128 (321)
..++++||+|.|+... ..|||...+..+ ..=....+ ....| ..+++++++|.|-|.|.... .||-.|.|.
T Consensus 12 ~i~v~~GdtVt~~N~d~~~Hnv~~~~g~~-~~~~~~~~--~~~~g~~~~~tf~~~G~y~y~C~~Hp----~M~G~v~V~ 83 (83)
T TIGR02657 12 ELHVKVGDTVTWINREAMPHNVHFVAGVL-GEAALKGP--MMKKEQAYSLTFTEAGTYDYHCTPHP----FMRGKVVVE 83 (83)
T ss_pred EEEECCCCEEEEEECCCCCccEEecCCCC-cccccccc--ccCCCCEEEEECCCCEEEEEEcCCCC----CCeEEEEEC
Confidence 4689999999998764 379998653221 11000111 12333 35889999999999999844 599988874
No 20
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=96.51 E-value=0.01 Score=51.59 Aligned_cols=73 Identities=19% Similarity=0.353 Sum_probs=48.9
Q ss_pred CeeEeCCEEEEEecCC----CccEEEeCcc-ccc------------ccCCCCCCCccCCC-----CcEEEecccccEEEE
Q 020799 53 QTFSVGDILLFNFTTG----QQDVASVTKE-AYE------------NCNPASPISRKTTG-----PAEFSLEAAGDYYFI 110 (321)
Q Consensus 53 ~~F~vGD~LvF~y~~~----~hsV~~v~~~-~Y~------------~C~~~~~~~~~~~G-----~~~v~L~~~G~~yFi 110 (321)
.+++.||++.|...+. .|.....++. .+. .|....+ ..+| ..+++++++|+|||.
T Consensus 54 I~v~~Gd~V~v~v~N~~~~~~H~~~I~~~g~~~~~~p~mdG~~~~~~~~i~p~---~~~g~~~~~~~tf~f~~aGtywyh 130 (148)
T TIGR03095 54 IVIPEGVTVHFTVINTDTDSGHNFDISKRGPPYPYMPGMDGLGFVAGTGFLPP---PKSGKFGYTDFTYHFSTAGTYWYL 130 (148)
T ss_pred EEEcCCCEEEEEEEeCCCCccccEEeecCCCccccccccCCCCccccCcccCC---CCCCccceeEEEEECCCCeEEEEE
Confidence 3578999999988754 5666654321 110 1211111 1122 447778899999999
Q ss_pred ecCccccccCceeEEEec
Q 020799 111 CTLELHCTLGQKLAIHVT 128 (321)
Q Consensus 111 c~~~~HC~~GmKl~I~V~ 128 (321)
|.+++|=+.||.-.|.|.
T Consensus 131 C~~pgH~~~GM~G~iiV~ 148 (148)
T TIGR03095 131 CTYPGHAENGMYGKIVVK 148 (148)
T ss_pred cCChhHHHCCCEEEEEEC
Confidence 999999999999888873
No 21
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=95.91 E-value=0.032 Score=50.78 Aligned_cols=30 Identities=20% Similarity=0.249 Sum_probs=27.2
Q ss_pred cCeeEEEEcCCCCCCCCCCeEEEEEeCCCC
Q 020799 222 FPGEYYFTSTYLSHCSLGQRLAINVTGTST 251 (321)
Q Consensus 222 ~~G~~yFic~~~~HC~~GmKl~I~V~~~~~ 251 (321)
++|.||++|+++||-+.||-..+.|...-.
T Consensus 161 ~aG~YwlvC~ipGHA~sGMw~~LiVs~~vt 190 (196)
T PF06525_consen 161 PAGYYWLVCGIPGHAESGMWGVLIVSSNVT 190 (196)
T ss_pred CCceEEEEccCCChhhcCCEEEEEEecCcc
Confidence 789999999999999999999999987643
No 22
>PF00812 Ephrin: Ephrin; InterPro: IPR001799 Ephrins are a family of proteins [] that are ligands of class V (EPH-related) receptor protein-tyrosine kinases (see IPR001426 from INTERPRO). These receptors and their ligands have been implicated in regulating neuronal axon guidance and in patterning of the developing nervous system and may also serve a patterning and compartmentalisation role outside of the nervous system as well. Ephrins are membrane-attached proteins of 205 to 340 residues. Attachment appears to be crucial for their normal function. Type-A ephrins are linked to the membrane via a glycosylphosphatidylinositol (GPI)-linkage, while type-B ephrins are type-I membrane proteins.; GO: 0016020 membrane; PDB: 3HEI_P 3CZU_B 3MBW_B 1KGY_E 1IKO_P 2WO3_B 2I85_A 2VSK_B 3GXU_B 2VSM_B ....
Probab=95.83 E-value=0.013 Score=50.95 Aligned_cols=76 Identities=33% Similarity=0.562 Sum_probs=46.4
Q ss_pred CeeEeCCEEEEE---ecCC--------CccEEEeCcccccccCCCC-CCCc------c-CCCCcEEEec-----------
Q 020799 53 QTFSVGDILLFN---FTTG--------QQDVASVTKEAYENCNPAS-PISR------K-TTGPAEFSLE----------- 102 (321)
Q Consensus 53 ~~F~vGD~LvF~---y~~~--------~hsV~~v~~~~Y~~C~~~~-~~~~------~-~~G~~~v~L~----------- 102 (321)
...++||.|-+- |+.. ...+++|++++|+.|+... +... . ..|...|++.
T Consensus 24 i~V~i~D~ldIiCP~~~~~~~~~~~~E~~~lY~Vs~~~y~~C~~~~~~~~l~~C~~P~~~~~~~kft~kFq~fSP~p~G~ 103 (145)
T PF00812_consen 24 IEVRIGDYLDIICPHYEPGGPPPEEYEYYILYMVSEEGYESCSLTSRPRLLWECDRPEAPHGPKKFTIKFQEFSPFPLGL 103 (145)
T ss_dssp EEE-TTEEEEEEE--SSSSSSSCSSS-BEEEEEE-HHHHHHTBSSTSEEEEEEE-TTTSTTSSEEEEEESSSS-SSTTSS
T ss_pred EEecCCCEEEEECCCCCCCCCCCCCceEEEEEEEcHHHhcccCCCCCCcEEEEeCCCCCCCCCcEEEEEEEECCCCCCCe
Confidence 367889999884 4433 4567889999999999632 2111 1 1233344332
Q ss_pred --ccc-cEEEEecC-----------ccccc-cCceeEEEec
Q 020799 103 --AAG-DYYFICTL-----------ELHCT-LGQKLAIHVT 128 (321)
Q Consensus 103 --~~G-~~yFic~~-----------~~HC~-~GmKl~I~V~ 128 (321)
++| .||||++- +|-|. ..|||.|.|.
T Consensus 104 EF~pG~~YY~ISts~g~~~g~~~~~gG~C~~~~mkl~~~v~ 144 (145)
T PF00812_consen 104 EFQPGHDYYYISTSTGTQEGLDNRRGGLCLSHNMKLRIKVG 144 (145)
T ss_dssp S--TTEEEEEEEEESSSSTTTTSSBSCHHHEEEEEEEEECT
T ss_pred eecCCCeEEEEEccCCCCCCcccccccccCcCeeEEEEecC
Confidence 346 68888763 33484 6799999885
No 23
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=95.75 E-value=0.042 Score=50.02 Aligned_cols=77 Identities=19% Similarity=0.296 Sum_probs=48.7
Q ss_pred EeCCEEEEEecCC---CccEEEe-CcccccccCCC---CCCC-------------ccCCCCcE-EEe-c-ccccEEEEec
Q 020799 56 SVGDILLFNFTTG---QQDVASV-TKEAYENCNPA---SPIS-------------RKTTGPAE-FSL-E-AAGDYYFICT 112 (321)
Q Consensus 56 ~vGD~LvF~y~~~---~hsV~~v-~~~~Y~~C~~~---~~~~-------------~~~~G~~~-v~L-~-~~G~~yFic~ 112 (321)
-.|-++.|+|.+. .|+++.| +...+..+..- +.+- -...|... ..+ + .+|.||++|+
T Consensus 91 PAGw~V~i~f~N~~~l~Hnl~iv~~~~~~p~~~~i~~DgkIl~~~G~s~~~~~~~GI~~G~s~~~~~~~l~aG~YwlvC~ 170 (196)
T PF06525_consen 91 PAGWNVQITFTNQESLPHNLVIVQNDTPTPNNPPISSDGKILLYVGASPGNYTSNGISSGQSASGVYNDLPAGYYWLVCG 170 (196)
T ss_pred cCCCEEEEEEEcCCCCCeeEEEEeCCCCCCCccccCCCCceeeeccCCCCccccCCccCCceeeEEEccCCCceEEEEcc
Confidence 4577888877543 6999888 33334444221 1110 01123322 122 2 5899999999
Q ss_pred CccccccCceeEEEecCCCC
Q 020799 113 LELHCTLGQKLAIHVTGPAP 132 (321)
Q Consensus 113 ~~~HC~~GmKl~I~V~~~~p 132 (321)
+++|=+.||-..+.|.....
T Consensus 171 ipGHA~sGMw~~LiVs~~vt 190 (196)
T PF06525_consen 171 IPGHAESGMWGVLIVSSNVT 190 (196)
T ss_pred CCChhhcCCEEEEEEecCcc
Confidence 99999999999999987543
No 24
>TIGR03094 sulfo_cyanin sulfocyanin. Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.
Probab=93.85 E-value=0.061 Score=48.44 Aligned_cols=31 Identities=19% Similarity=0.343 Sum_probs=27.5
Q ss_pred ecCeeEEEEcCCCCCCCCCCeEEEEEeCCCC
Q 020799 221 KFPGEYYFTSTYLSHCSLGQRLAINVTGTST 251 (321)
Q Consensus 221 ~~~G~~yFic~~~~HC~~GmKl~I~V~~~~~ 251 (321)
.++|.||++|+++||-+.||=..+.|..+-.
T Consensus 159 ~~~G~YwlvCgipGHAesGMw~~lIVSs~vt 189 (195)
T TIGR03094 159 TSAGKYWLVCGITGHAESGMWAVVIVSSNVT 189 (195)
T ss_pred CCCeeEEEEcccCChhhcCcEEEEEEecCcc
Confidence 3899999999999999999999998876644
No 25
>PF00812 Ephrin: Ephrin; InterPro: IPR001799 Ephrins are a family of proteins [] that are ligands of class V (EPH-related) receptor protein-tyrosine kinases (see IPR001426 from INTERPRO). These receptors and their ligands have been implicated in regulating neuronal axon guidance and in patterning of the developing nervous system and may also serve a patterning and compartmentalisation role outside of the nervous system as well. Ephrins are membrane-attached proteins of 205 to 340 residues. Attachment appears to be crucial for their normal function. Type-A ephrins are linked to the membrane via a glycosylphosphatidylinositol (GPI)-linkage, while type-B ephrins are type-I membrane proteins.; GO: 0016020 membrane; PDB: 3HEI_P 3CZU_B 3MBW_B 1KGY_E 1IKO_P 2WO3_B 2I85_A 2VSK_B 3GXU_B 2VSM_B ....
Probab=93.81 E-value=0.14 Score=44.54 Aligned_cols=76 Identities=28% Similarity=0.468 Sum_probs=46.1
Q ss_pred ceeEeCCEEEEeecC---C--------CCcEEEeCccccccccCC-CCcccc-------cCCCeEEEee-----------
Q 020799 172 YSFFVCDTLVFNFAN---G--------TQDVAIVPKDVYETCNIN-STIAVF-------TSSPVKITLK----------- 221 (321)
Q Consensus 172 ~~F~vGD~LvF~y~~---~--------~h~V~~V~~~~y~~C~~~-~p~~~~-------~~G~~~v~L~----------- 221 (321)
...++||.|-+.=.. . ...+++|++++|+.|+.. .+...+ ..|..++++.
T Consensus 24 i~V~i~D~ldIiCP~~~~~~~~~~~~E~~~lY~Vs~~~y~~C~~~~~~~~l~~C~~P~~~~~~~kft~kFq~fSP~p~G~ 103 (145)
T PF00812_consen 24 IEVRIGDYLDIICPHYEPGGPPPEEYEYYILYMVSEEGYESCSLTSRPRLLWECDRPEAPHGPKKFTIKFQEFSPFPLGL 103 (145)
T ss_dssp EEE-TTEEEEEEE--SSSSSSSCSSS-BEEEEEE-HHHHHHTBSSTSEEEEEEE-TTTSTTSSEEEEEESSSS-SSTTSS
T ss_pred EEecCCCEEEEECCCCCCCCCCCCCceEEEEEEEcHHHhcccCCCCCCcEEEEeCCCCCCCCCcEEEEEEEECCCCCCCe
Confidence 467789999886442 2 346788999999999963 322221 1244555552
Q ss_pred --cCe-eEEEEcCC-----------CCCCCC-CCeEEEEEe
Q 020799 222 --FPG-EYYFTSTY-----------LSHCSL-GQRLAINVT 247 (321)
Q Consensus 222 --~~G-~~yFic~~-----------~~HC~~-GmKl~I~V~ 247 (321)
++| .||||++- +|-|.. .|||.+.|.
T Consensus 104 EF~pG~~YY~ISts~g~~~g~~~~~gG~C~~~~mkl~~~v~ 144 (145)
T PF00812_consen 104 EFQPGHDYYYISTSTGTQEGLDNRRGGLCLSHNMKLRIKVG 144 (145)
T ss_dssp S--TTEEEEEEEEESSSSTTTTSSBSCHHHEEEEEEEEECT
T ss_pred eecCCCeEEEEEccCCCCCCcccccccccCcCeeEEEEecC
Confidence 456 78888753 233764 689988874
No 26
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=93.60 E-value=0.041 Score=44.31 Aligned_cols=63 Identities=21% Similarity=0.292 Sum_probs=28.5
Q ss_pred CCeeEeCC--EEEEEec-CCCccEEEeCcccccccCCCCCCCccCCCC-cEEEe--cccccEEEEecCccccccCceeEE
Q 020799 52 MQTFSVGD--ILLFNFT-TGQQDVASVTKEAYENCNPASPISRKTTGP-AEFSL--EAAGDYYFICTLELHCTLGQKLAI 125 (321)
Q Consensus 52 ~~~F~vGD--~LvF~y~-~~~hsV~~v~~~~Y~~C~~~~~~~~~~~G~-~~v~L--~~~G~~yFic~~~~HC~~GmKl~I 125 (321)
..+++.|+ +|+|+-. ...|++..-+ .+-......|. .++++ +++|.|=|+|+...+ ||-.|
T Consensus 36 ~i~v~~G~~v~l~~~N~~~~~h~~~i~~---------~~~~~~l~~g~~~~~~f~~~~~G~y~~~C~~~~~----m~G~l 102 (104)
T PF13473_consen 36 TITVKAGQPVTLTFTNNDSRPHEFVIPD---------LGISKVLPPGETATVTFTPLKPGEYEFYCTMHPN----MKGTL 102 (104)
T ss_dssp EEEEETTCEEEEEEEE-SSS-EEEEEGG---------GTEEEEE-TT-EEEEEEEE-S-EEEEEB-SSS-T----TB---
T ss_pred EEEEcCCCeEEEEEEECCCCcEEEEECC---------CceEEEECCCCEEEEEEcCCCCEEEEEEcCCCCc----ceecc
Confidence 56899999 4455433 2345554321 01101233343 35555 899999999998653 55555
Q ss_pred Ee
Q 020799 126 HV 127 (321)
Q Consensus 126 ~V 127 (321)
.|
T Consensus 103 iV 104 (104)
T PF13473_consen 103 IV 104 (104)
T ss_dssp --
T ss_pred cC
Confidence 43
No 27
>KOG3858 consensus Ephrin, ligand for Eph receptor tyrosine kinase [Signal transduction mechanisms]
Probab=93.42 E-value=0.37 Score=45.07 Aligned_cols=32 Identities=25% Similarity=0.468 Sum_probs=22.1
Q ss_pred eeEeCCEEEE---EecCCC------ccEEEeCcccccccCC
Q 020799 54 TFSVGDILLF---NFTTGQ------QDVASVTKEAYENCNP 85 (321)
Q Consensus 54 ~F~vGD~LvF---~y~~~~------hsV~~v~~~~Y~~C~~ 85 (321)
-.++||.|-+ +|+.+. .=++.|++++|+.|+.
T Consensus 46 ~v~igD~ldIiCP~~e~~~~~~~E~yilYmV~~~~y~~C~~ 86 (233)
T KOG3858|consen 46 YVQIGDYLDIICPHYEEGGPEGYEYYILYMVSEEEYDLCEL 86 (233)
T ss_pred EeccCCEEEEECCCCCCCCCCcceEEEEEEeChHHhhhhhc
Confidence 3566888866 354322 2356789999999996
No 28
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=92.44 E-value=0.55 Score=41.37 Aligned_cols=34 Identities=21% Similarity=0.314 Sum_probs=30.8
Q ss_pred CCeEEEeecCeeEEEEcCCCCCCCCCCeEEEEEe
Q 020799 214 SPVKITLKFPGEYYFTSTYLSHCSLGQRLAINVT 247 (321)
Q Consensus 214 G~~~v~L~~~G~~yFic~~~~HC~~GmKl~I~V~ 247 (321)
|.-++.++.+|.|=|+|-++||-+.||...|+|.
T Consensus 124 ~elvv~ft~~g~ye~~C~iPGHy~AGM~g~itV~ 157 (158)
T COG4454 124 GELVVVFTGAGKYEFACNIPGHYEAGMVGEITVS 157 (158)
T ss_pred EEEEEEecCCccEEEEecCCCcccCCcEEEEEeC
Confidence 3457888999999999999999999999999985
No 29
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=91.57 E-value=0.4 Score=38.50 Aligned_cols=64 Identities=19% Similarity=0.253 Sum_probs=29.8
Q ss_pred ccceeEeCCEEEEeec---CCCCcEEEeCccccccccCCCCcccccCCCe-EEEe--ecCeeEEEEcCCCCCCCCCCeEE
Q 020799 170 SFYSFFVCDTLVFNFA---NGTQDVAIVPKDVYETCNINSTIAVFTSSPV-KITL--KFPGEYYFTSTYLSHCSLGQRLA 243 (321)
Q Consensus 170 ~~~~F~vGD~LvF~y~---~~~h~V~~V~~~~y~~C~~~~p~~~~~~G~~-~v~L--~~~G~~yFic~~~~HC~~GmKl~ 243 (321)
+..+++.|+.+.+.+. ...|++..-. ..-......|.+ ++++ +++|.|=|+|+...+ ||-.
T Consensus 35 ~~i~v~~G~~v~l~~~N~~~~~h~~~i~~---------~~~~~~l~~g~~~~~~f~~~~~G~y~~~C~~~~~----m~G~ 101 (104)
T PF13473_consen 35 STITVKAGQPVTLTFTNNDSRPHEFVIPD---------LGISKVLPPGETATVTFTPLKPGEYEFYCTMHPN----MKGT 101 (104)
T ss_dssp -EEEEETTCEEEEEEEE-SSS-EEEEEGG---------GTEEEEE-TT-EEEEEEEE-S-EEEEEB-SSS-T----TB--
T ss_pred CEEEEcCCCeEEEEEEECCCCcEEEEECC---------CceEEEECCCCEEEEEEcCCCCEEEEEEcCCCCc----ceec
Confidence 4689999995444443 2345554222 111123334443 4555 899999999997663 6666
Q ss_pred EEE
Q 020799 244 INV 246 (321)
Q Consensus 244 I~V 246 (321)
|+|
T Consensus 102 liV 104 (104)
T PF13473_consen 102 LIV 104 (104)
T ss_dssp ---
T ss_pred ccC
Confidence 654
No 30
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=90.41 E-value=0.46 Score=40.93 Aligned_cols=55 Identities=13% Similarity=0.181 Sum_probs=34.8
Q ss_pred cccceeEeCCEEEEeecCC---CCcEEEeCccccccccCCCCcccccCCCe---EEEeecCeeEEEEcCC
Q 020799 169 ASFYSFFVCDTLVFNFANG---TQDVAIVPKDVYETCNINSTIAVFTSSPV---KITLKFPGEYYFTSTY 232 (321)
Q Consensus 169 a~~~~F~vGD~LvF~y~~~---~h~V~~V~~~~y~~C~~~~p~~~~~~G~~---~v~L~~~G~~yFic~~ 232 (321)
.+..+++.||.+.+.+.+. .|.+.. ++|+ .+ ....-|.+ +++.+++|.|.|+|+.
T Consensus 60 P~~I~VkaGD~Vtl~vtN~d~~~H~f~i---~~~g---is---~~I~pGet~TitF~adKpG~Y~y~C~~ 120 (135)
T TIGR03096 60 PEALVVKKGTPVKVTVENKSPISEGFSI---DAYG---IS---EVIKAGETKTISFKADKAGAFTIWCQL 120 (135)
T ss_pred CCEEEECCCCEEEEEEEeCCCCccceEE---CCCC---cc---eEECCCCeEEEEEECCCCEEEEEeCCC
Confidence 3568999999998877532 244332 2222 11 22233433 5777999999999986
No 31
>TIGR03094 sulfo_cyanin sulfocyanin. Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.
Probab=90.26 E-value=0.38 Score=43.47 Aligned_cols=30 Identities=23% Similarity=0.524 Sum_probs=26.5
Q ss_pred ccccEEEEecCccccccCceeEEEecCCCC
Q 020799 103 AAGDYYFICTLELHCTLGQKLAIHVTGPAP 132 (321)
Q Consensus 103 ~~G~~yFic~~~~HC~~GmKl~I~V~~~~p 132 (321)
++|.||++|++++|-+.||=..+.|.+...
T Consensus 160 ~~G~YwlvCgipGHAesGMw~~lIVSs~vt 189 (195)
T TIGR03094 160 SAGKYWLVCGITGHAESGMWAVVIVSSNVT 189 (195)
T ss_pred CCeeEEEEcccCChhhcCcEEEEEEecCcc
Confidence 689999999999999999998888886443
No 32
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=89.86 E-value=0.4 Score=42.22 Aligned_cols=78 Identities=18% Similarity=0.278 Sum_probs=49.4
Q ss_pred CCCeeEeCCEEEEEecCCCccEEEeC--cccc-----------cc--cCCCCCC--CccCCCCcEEEecccccEEEEecC
Q 020799 51 SMQTFSVGDILLFNFTTGQQDVASVT--KEAY-----------EN--CNPASPI--SRKTTGPAEFSLEAAGDYYFICTL 113 (321)
Q Consensus 51 s~~~F~vGD~LvF~y~~~~hsV~~v~--~~~Y-----------~~--C~~~~~~--~~~~~G~~~v~L~~~G~~yFic~~ 113 (321)
+...++.|-++.|.-.+...-+.+++ +.+. +. -+..+.+ ..-.+|..++.+.++|.|=|+|.+
T Consensus 63 ~~~~v~aG~tv~~v~~n~~el~hef~~~~~~~~~~~~~~~~~~~Dme~d~~~~v~L~PG~s~elvv~ft~~g~ye~~C~i 142 (158)
T COG4454 63 SSFEVKAGETVRFVLKNEGELKHEFTMDAPDKNLEHVTHMILADDMEHDDPNTVTLAPGKSGELVVVFTGAGKYEFACNI 142 (158)
T ss_pred CcccccCCcEEeeeecCcccceEEEeccCccccchhHHHhhhCCccccCCcceeEeCCCCcEEEEEEecCCccEEEEecC
Confidence 45678899999886654433333321 1111 10 0111111 122344457888899999999999
Q ss_pred ccccccCceeEEEec
Q 020799 114 ELHCTLGQKLAIHVT 128 (321)
Q Consensus 114 ~~HC~~GmKl~I~V~ 128 (321)
++|-+.||.-.|+|.
T Consensus 143 PGHy~AGM~g~itV~ 157 (158)
T COG4454 143 PGHYEAGMVGEITVS 157 (158)
T ss_pred CCcccCCcEEEEEeC
Confidence 999999999999986
No 33
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=88.89 E-value=4.1 Score=34.67 Aligned_cols=29 Identities=21% Similarity=0.548 Sum_probs=22.0
Q ss_pred cEEEec----cccc-EEEEecCccccccCceeEEE
Q 020799 97 AEFSLE----AAGD-YYFICTLELHCTLGQKLAIH 126 (321)
Q Consensus 97 ~~v~L~----~~G~-~yFic~~~~HC~~GmKl~I~ 126 (321)
++|+++ ++|. |=|+|++++|-. .||-.+.
T Consensus 91 ~svtF~~~~l~~g~~Y~f~CSFPGH~~-~MkG~l~ 124 (125)
T TIGR02695 91 TSVTFDVSKLSAGEDYTFFCSFPGHWA-MMRGTVK 124 (125)
T ss_pred EEEEEECCCCCCCCcceEEEcCCCcHH-hceEEEe
Confidence 456665 3675 999999999997 6887654
No 34
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=88.52 E-value=2.6 Score=35.91 Aligned_cols=29 Identities=24% Similarity=0.435 Sum_probs=22.4
Q ss_pred eEEEee----cCee-EEEEcCCCCCCCCCCeEEEE
Q 020799 216 VKITLK----FPGE-YYFTSTYLSHCSLGQRLAIN 245 (321)
Q Consensus 216 ~~v~L~----~~G~-~yFic~~~~HC~~GmKl~I~ 245 (321)
++|+++ ++|. |=|||++|||=. .||-.++
T Consensus 91 ~svtF~~~~l~~g~~Y~f~CSFPGH~~-~MkG~l~ 124 (125)
T TIGR02695 91 TSVTFDVSKLSAGEDYTFFCSFPGHWA-MMRGTVK 124 (125)
T ss_pred EEEEEECCCCCCCCcceEEEcCCCcHH-hceEEEe
Confidence 456665 4675 889999999996 6987764
No 35
>PF05283 MGC-24: Multi-glycosylated core protein 24 (MGC-24); InterPro: IPR007947 CD164 is a mucin-like receptor, or sialomucin, with specificity in receptor/ ligand interactions that depends on the structural characteristics of the mucin-like receptor. Its functions include mediating, or regulating, haematopoietic progenitor cell adhesion and the negative regulation of their growth and/or-differentiation. It exists in the native state as a disulphide- linked homodimer of two 80-85kDa subunits. It is usually expressed by CD34+ and CD341o/- haematopoietic stem cells and associated microenvironmental cells. It contains, in its extracellular region, two mucin domains (I and II) linked by a non-mucin domain, which has been predicted to contain intra- disulphide bridges. This receptor may play a key role in haematopoiesis by facilitating the adhesion of human CD34+ cells to bone marrow stroma and by negatively regulating CD34+ CD341o/- haematopoietic progenitor cell proliferation. These effects involve the CD164 class I and/or II epitopes recognised by the monoclonal antibodies (mAbs) 105A5 and 103B2/9E10. These epitopes are carbohydrate-dependent and are located on the N-terminal mucin domain I [, ]. It has been found that murine MGC-24v and rat endolyn share significant sequence similarities with human CD164. However, CD164 lacks the consensus glycosaminoglycan (GAG)-attachment site found in MGC-24; it is possible that GAG-association is responsible for the high molecular weight of the epithelial-derived MGC-24 glycoprotein []. Genomic structure studies have placed CD164 within the mucin-subgroup that comprises multiple exons, and demonstrate the diverse chromosomal distribution of this family of molecules. Molecules with such multiple exons may have sophisticated regulatory mechanisms that involve not only post-translational modifications of the oligosaccharide side chains, but also differential exon usage. Although differences in the intron and exon sizes are seen between the mouse and human genes, the predicted proteins are similar in size and structure, maintaining functionally important motifs that regulate cell proliferation or subcellular distribution []. CD164 is a gene whose expression depends on differential usage of poly- adenylation sites within the 3'-UTR. The conserved distribution of the 3.2- and 1.2-kb CD164 transcripts between mouse and human suggests that (i) a mechanism may exist to regulate tissue-specific polyadenylation, and (ii) differences in polyadenylation are important for the expression and function of CD164 in different tissues. Two other aspects of the structure of CD164 are of particular interest. First, it shares one of several conserved features of a cytokine-binding pocket - in this respect, it is notable that evidence exists for a class of cell-surface sialomucin modulators that directly interact with growth factor receptors to regulate their response to physiological ligands. Second, its cytoplasmic tail contains a C-terminal YHTL motif found in many endocytic membrane proteins or receptors. These Tyr-based motifs bind to adaptor proteins, which mediate the sorting of membrane proteins into transport vesicles from the plasma membrane to the endosomes, and between intracellular compartments.
Probab=88.46 E-value=3.6 Score=37.33 Aligned_cols=22 Identities=9% Similarity=0.027 Sum_probs=16.7
Q ss_pred ecCeeEEEEcCCCCCCCCCCeE
Q 020799 221 KFPGEYYFTSTYLSHCSLGQRL 242 (321)
Q Consensus 221 ~~~G~~yFic~~~~HC~~GmKl 242 (321)
+..+=.|..|.-.+||..--.+
T Consensus 71 n~s~C~W~~C~~~~~Cv~~stV 92 (186)
T PF05283_consen 71 NNSTCVWMECKGESYCVNNSTV 92 (186)
T ss_pred ccCceEeeecCCCCcccCCccc
Confidence 4567889999999999965433
No 36
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=87.48 E-value=0.65 Score=40.02 Aligned_cols=56 Identities=18% Similarity=0.312 Sum_probs=34.2
Q ss_pred CCCeeEeCCEEEEEecCC---CccEEEeCcccccccCCCCCCCccCCCC---cEEEecccccEEEEecCcccc
Q 020799 51 SMQTFSVGDILLFNFTTG---QQDVASVTKEAYENCNPASPISRKTTGP---AEFSLEAAGDYYFICTLELHC 117 (321)
Q Consensus 51 s~~~F~vGD~LvF~y~~~---~hsV~~v~~~~Y~~C~~~~~~~~~~~G~---~~v~L~~~G~~yFic~~~~HC 117 (321)
+..+++.||.+.+++.+. .|.+.. .+|. .. .....|. .+|+.+++|.|.|+|+. ||
T Consensus 61 ~~I~VkaGD~Vtl~vtN~d~~~H~f~i---~~~g---is---~~I~pGet~TitF~adKpG~Y~y~C~~--HP 122 (135)
T TIGR03096 61 EALVVKKGTPVKVTVENKSPISEGFSI---DAYG---IS---EVIKAGETKTISFKADKAGAFTIWCQL--HP 122 (135)
T ss_pred CEEEECCCCEEEEEEEeCCCCccceEE---CCCC---cc---eEECCCCeEEEEEECCCCEEEEEeCCC--CC
Confidence 356789999998877532 244332 1221 11 1122333 25667899999999997 56
No 37
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=84.63 E-value=3.3 Score=40.16 Aligned_cols=76 Identities=13% Similarity=0.120 Sum_probs=49.0
Q ss_pred cceeEeCCEEEEeecCC-----CCcEEEeCccccccccCCCCcccccCCCe---EEEeecCeeEEEEcCC----CCCCCC
Q 020799 171 FYSFFVCDTLVFNFANG-----TQDVAIVPKDVYETCNINSTIAVFTSSPV---KITLKFPGEYYFTSTY----LSHCSL 238 (321)
Q Consensus 171 ~~~F~vGD~LvF~y~~~-----~h~V~~V~~~~y~~C~~~~p~~~~~~G~~---~v~L~~~G~~yFic~~----~~HC~~ 238 (321)
..+++.||++...+.+. .|++..=-....+ ..........|.+ .|+++.+|+|||-|.. ..|=..
T Consensus 60 ~irv~~Gd~v~v~v~N~~~~~~~h~~h~H~~~~~d---g~~~~~~I~PG~t~ty~F~~~~~Gty~YH~H~~~~~~~q~~~ 136 (311)
T TIGR02376 60 LIRVHEGDYVELTLINPPTNTMPHNVDFHAATGAL---GGAALTQVNPGETATLRFKATRPGAFVYHCAPPGMVPWHVVS 136 (311)
T ss_pred eEEEECCCEEEEEEEeCCCCCCceeeeecCCCccC---CCCcceeECCCCeEEEEEEcCCCEEEEEEcCCCCchhHHhhc
Confidence 36889999999888654 4665531110000 0011122334432 6788899999999995 458889
Q ss_pred CCeEEEEEeCC
Q 020799 239 GQRLAINVTGT 249 (321)
Q Consensus 239 GmKl~I~V~~~ 249 (321)
||...+.|...
T Consensus 137 Gl~G~liV~~~ 147 (311)
T TIGR02376 137 GMNGAIMVLPR 147 (311)
T ss_pred CcceEEEeecc
Confidence 99999999864
No 38
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=84.26 E-value=0.58 Score=37.87 Aligned_cols=19 Identities=21% Similarity=0.284 Sum_probs=10.6
Q ss_pred CchhhHHHHHHHHHHHHhh
Q 020799 1 MARTIILAIAVTASMASLL 19 (321)
Q Consensus 1 Ma~~~~~~~~~~~~~~~~~ 19 (321)
||++..|+|.+++++++|+
T Consensus 1 MaSK~~llL~l~LA~lLli 19 (95)
T PF07172_consen 1 MASKAFLLLGLLLAALLLI 19 (95)
T ss_pred CchhHHHHHHHHHHHHHHH
Confidence 9977765544444443343
No 39
>KOG3858 consensus Ephrin, ligand for Eph receptor tyrosine kinase [Signal transduction mechanisms]
Probab=84.04 E-value=8.4 Score=36.14 Aligned_cols=62 Identities=23% Similarity=0.484 Sum_probs=36.9
Q ss_pred cEEEeCccccccccC-CCCccccc--C--CCe----EEEee---------cCe-eEEEEcCC-----------CCCCCC-
Q 020799 190 DVAIVPKDVYETCNI-NSTIAVFT--S--SPV----KITLK---------FPG-EYYFTSTY-----------LSHCSL- 238 (321)
Q Consensus 190 ~V~~V~~~~y~~C~~-~~p~~~~~--~--G~~----~v~L~---------~~G-~~yFic~~-----------~~HC~~- 238 (321)
-+++|++++|+.|+. +.+-..+. . ... +|+.- ++| +||||++- ++-|..
T Consensus 72 ilYmV~~~~y~~C~~~s~~~~~~~C~rP~~~~kfsikFq~ftP~p~G~EF~pG~~YY~IStStg~~~g~~~~~ggvc~~~ 151 (233)
T KOG3858|consen 72 ILYMVSEEEYDLCELRSKPFKRWECNRPSTPLKFSIKFQRFTPFPLGFEFQPGHTYYYISTSTGDAEGLCNLRGGVCVTR 151 (233)
T ss_pred EEEEeChHHhhhhhccCCCcEEEEecCCCcchhhhhhheecCCCCCCccccCCCeEEEEeCCCccccccchhhCCEeccC
Confidence 466799999999996 33332221 1 111 11110 456 78888763 455654
Q ss_pred CCeEEEEEeCCCC
Q 020799 239 GQRLAINVTGTST 251 (321)
Q Consensus 239 GmKl~I~V~~~~~ 251 (321)
.||+.+.|..+..
T Consensus 152 ~mk~~~~V~~~~~ 164 (233)
T KOG3858|consen 152 NMKLLMKVGQSPR 164 (233)
T ss_pred CceEEEEecccCC
Confidence 5999999986544
No 40
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=83.32 E-value=3 Score=40.38 Aligned_cols=75 Identities=16% Similarity=0.240 Sum_probs=48.7
Q ss_pred CeeEeCCEEEEEecCC-----CccEEEeCcccccccCCCCCCCccCCCC---cEEEecccccEEEEecC----ccccccC
Q 020799 53 QTFSVGDILLFNFTTG-----QQDVASVTKEAYENCNPASPISRKTTGP---AEFSLEAAGDYYFICTL----ELHCTLG 120 (321)
Q Consensus 53 ~~F~vGD~LvF~y~~~-----~hsV~~v~~~~Y~~C~~~~~~~~~~~G~---~~v~L~~~G~~yFic~~----~~HC~~G 120 (321)
.+++.||++..++.+. .|++..=-....+ ..........|. ..|+++.+|++||-|.. ..|=..|
T Consensus 61 irv~~Gd~v~v~v~N~~~~~~~h~~h~H~~~~~d---g~~~~~~I~PG~t~ty~F~~~~~Gty~YH~H~~~~~~~q~~~G 137 (311)
T TIGR02376 61 IRVHEGDYVELTLINPPTNTMPHNVDFHAATGAL---GGAALTQVNPGETATLRFKATRPGAFVYHCAPPGMVPWHVVSG 137 (311)
T ss_pred EEEECCCEEEEEEEeCCCCCCceeeeecCCCccC---CCCcceeECCCCeEEEEEEcCCCEEEEEEcCCCCchhHHhhcC
Confidence 5789999999888764 4665431110000 001111233343 37788889999999995 4588899
Q ss_pred ceeEEEecCC
Q 020799 121 QKLAIHVTGP 130 (321)
Q Consensus 121 mKl~I~V~~~ 130 (321)
|.-.+.|...
T Consensus 138 l~G~liV~~~ 147 (311)
T TIGR02376 138 MNGAIMVLPR 147 (311)
T ss_pred cceEEEeecc
Confidence 9999999864
No 41
>PLN02354 copper ion binding / oxidoreductase
Probab=81.01 E-value=14 Score=38.79 Aligned_cols=79 Identities=13% Similarity=0.186 Sum_probs=49.0
Q ss_pred CeeEeCCEEEEEecCCC--------ccEEEeCcccccc-cCCCCCCCccCCCCcEEEe-cccccEEEEecCccccccCce
Q 020799 53 QTFSVGDILLFNFTTGQ--------QDVASVTKEAYEN-CNPASPISRKTTGPAEFSL-EAAGDYYFICTLELHCTLGQK 122 (321)
Q Consensus 53 ~~F~vGD~LvF~y~~~~--------hsV~~v~~~~Y~~-C~~~~~~~~~~~G~~~v~L-~~~G~~yFic~~~~HC~~GmK 122 (321)
.+++.||+|+.+..+.. |-+.|-.....|. -...-+|..-.+=..+|++ +..|++||=+-...+-..||.
T Consensus 60 I~~~~GD~v~V~v~N~l~~~ttiHWHGi~q~~~~~~DGv~~TQcpI~PG~sf~Y~F~~~~q~GT~WYHsH~~~Q~~~Gl~ 139 (552)
T PLN02354 60 INSTSNNNIVINVFNNLDEPFLLTWSGIQQRKNSWQDGVPGTNCPIPPGTNFTYHFQPKDQIGSYFYYPSTGMHRAAGGF 139 (552)
T ss_pred EEEeCCCEEEEEEEECCCCCcccccccccCCCCcccCCCcCCcCCCCCCCcEEEEEEeCCCCcceEEecCccceecCCcc
Confidence 57899999998876542 4444432211221 0011123222222247777 468999999988888889999
Q ss_pred eEEEecCCC
Q 020799 123 LAIHVTGPA 131 (321)
Q Consensus 123 l~I~V~~~~ 131 (321)
-.|.|..+.
T Consensus 140 G~lII~~~~ 148 (552)
T PLN02354 140 GGLRVNSRL 148 (552)
T ss_pred ceEEEcCCc
Confidence 999998653
No 42
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=78.47 E-value=2.1 Score=35.49 Aligned_cols=79 Identities=19% Similarity=0.107 Sum_probs=47.9
Q ss_pred cceeEeCCEEEEeecCC---CCcEEE----eCcc---ccccccCCCCcccccCCCeEEEeec-CeeEEEEcCCCCCCCCC
Q 020799 171 FYSFFVCDTLVFNFANG---TQDVAI----VPKD---VYETCNINSTIAVFTSSPVKITLKF-PGEYYFTSTYLSHCSLG 239 (321)
Q Consensus 171 ~~~F~vGD~LvF~y~~~---~h~V~~----V~~~---~y~~C~~~~p~~~~~~G~~~v~L~~-~G~~yFic~~~~HC~~G 239 (321)
..+++.||+|...+.+. .+++.- +..+ |--...+..++.--.+-.-.+++++ +|++||-|...+|=..|
T Consensus 27 tI~v~~Gd~v~i~~~N~l~~~~siH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~Y~~~~~~~~Gt~wYH~H~~~~~~~G 106 (117)
T PF07732_consen 27 TIRVREGDTVRITVTNNLDEPTSIHWHGLHQPPSPWMDGVPGVTQCPIAPGESFTYEFTANQQAGTYWYHSHVHGQQVMG 106 (117)
T ss_dssp EEEEETTEEEEEEEEEESSSGBSEEEETSBSTTGGGGSGGTTTSGSSBSTTEEEEEEEEESSCSEEEEEEECSTTHHHTT
T ss_pred EEEEEcCCeeEEEEEeccccccccccceeeeeeeeecCCcccccceeEEeecceeeeEeeeccccceeEeeCCCchhcCc
Confidence 57899999999988742 445543 1111 1000111122222111223788888 99999999998864489
Q ss_pred CeEEEEEeCC
Q 020799 240 QRLAINVTGT 249 (321)
Q Consensus 240 mKl~I~V~~~ 249 (321)
|--.|.|...
T Consensus 107 L~G~~iV~~~ 116 (117)
T PF07732_consen 107 LYGAIIVEPP 116 (117)
T ss_dssp EEEEEEEE-T
T ss_pred CEEEEEEcCC
Confidence 9988888653
No 43
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=74.10 E-value=3.6 Score=34.11 Aligned_cols=78 Identities=18% Similarity=0.203 Sum_probs=47.1
Q ss_pred CCeeEeCCEEEEEecCC---CccEEE----eCcc-cccc--cCCCCCCCccCCCCcEEEecc-cccEEEEecCccccccC
Q 020799 52 MQTFSVGDILLFNFTTG---QQDVAS----VTKE-AYEN--CNPASPISRKTTGPAEFSLEA-AGDYYFICTLELHCTLG 120 (321)
Q Consensus 52 ~~~F~vGD~LvF~y~~~---~hsV~~----v~~~-~Y~~--C~~~~~~~~~~~G~~~v~L~~-~G~~yFic~~~~HC~~G 120 (321)
..+++.||+|.+++.+. .+++.- +..+ ..|. .....++..-.+-...|++++ +|++||-|....|=..|
T Consensus 27 tI~v~~Gd~v~i~~~N~l~~~~siH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~Y~~~~~~~~Gt~wYH~H~~~~~~~G 106 (117)
T PF07732_consen 27 TIRVREGDTVRITVTNNLDEPTSIHWHGLHQPPSPWMDGVPGVTQCPIAPGESFTYEFTANQQAGTYWYHSHVHGQQVMG 106 (117)
T ss_dssp EEEEETTEEEEEEEEEESSSGBSEEEETSBSTTGGGGSGGTTTSGSSBSTTEEEEEEEEESSCSEEEEEEECSTTHHHTT
T ss_pred EEEEEcCCeeEEEEEeccccccccccceeeeeeeeecCCcccccceeEEeecceeeeEeeeccccceeEeeCCCchhcCc
Confidence 35789999999998743 344432 1111 0111 111112221111224788888 99999999998765599
Q ss_pred ceeEEEecC
Q 020799 121 QKLAIHVTG 129 (321)
Q Consensus 121 mKl~I~V~~ 129 (321)
|--.|.|..
T Consensus 107 L~G~~iV~~ 115 (117)
T PF07732_consen 107 LYGAIIVEP 115 (117)
T ss_dssp EEEEEEEE-
T ss_pred CEEEEEEcC
Confidence 998888874
No 44
>PRK02888 nitrous-oxide reductase; Validated
Probab=73.89 E-value=7.6 Score=41.40 Aligned_cols=66 Identities=23% Similarity=0.298 Sum_probs=41.4
Q ss_pred cceeEeCCEEEEeecCC------CCcEEEeCccccccccCCCCcc-cccCC---CeEEEeecCeeEEEEcCC---CCCCC
Q 020799 171 FYSFFVCDTLVFNFANG------TQDVAIVPKDVYETCNINSTIA-VFTSS---PVKITLKFPGEYYFTSTY---LSHCS 237 (321)
Q Consensus 171 ~~~F~vGD~LvF~y~~~------~h~V~~V~~~~y~~C~~~~p~~-~~~~G---~~~v~L~~~G~~yFic~~---~~HC~ 237 (321)
..++++||.+.|...+- .|....-. |+ ++ ....| ..+|+.+++|.|||+|+. .+|
T Consensus 556 ~i~Vk~GDeVt~~lTN~d~~~DViHGF~Ip~---~n-------I~~dv~PG~t~svtF~adkPGvy~~~CtefCGa~H-- 623 (635)
T PRK02888 556 EFTVKQGDEVTVIVTNLDKVEDLTHGFAIPN---YG-------VNMEVAPQATASVTFTADKPGVYWYYCTWFCHALH-- 623 (635)
T ss_pred eEEecCCCEEEEEEEeCCcccccccceeecc---cC-------ccEEEcCCceEEEEEEcCCCEEEEEECCcccccCc--
Confidence 46788899998888752 23333211 11 11 11223 336778999999999997 334
Q ss_pred CCCeEEEEEeC
Q 020799 238 LGQRLAINVTG 248 (321)
Q Consensus 238 ~GmKl~I~V~~ 248 (321)
.+|+..|.|..
T Consensus 624 ~~M~G~~iVep 634 (635)
T PRK02888 624 MEMRGRMLVEP 634 (635)
T ss_pred ccceEEEEEEe
Confidence 37888888864
No 45
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=73.28 E-value=16 Score=36.70 Aligned_cols=30 Identities=27% Similarity=0.408 Sum_probs=21.3
Q ss_pred CcEEEecccccEEEEecCccccccCceeEEEecCC
Q 020799 96 PAEFSLEAAGDYYFICTLELHCTLGQKLAIHVTGP 130 (321)
Q Consensus 96 ~~~v~L~~~G~~yFic~~~~HC~~GmKl~I~V~~~ 130 (321)
..+++| ++|+|-|+|+. | ..||-.|+|..+
T Consensus 89 ~l~~~L-~pGtY~~~C~~--~--~~~~g~l~Vtg~ 118 (375)
T PRK10378 89 KMTANL-QPGEYDMTCGL--L--TNPKGKLIVKGE 118 (375)
T ss_pred EEEEec-CCceEEeecCc--C--CCCCceEEEeCC
Confidence 345666 69999999976 4 335777888653
No 46
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=72.19 E-value=45 Score=35.45 Aligned_cols=79 Identities=14% Similarity=0.179 Sum_probs=49.3
Q ss_pred CeeEeCCEEEEEecCCC--------ccEEEeCcccccc-cCCCCCCCccCCCCcEEEe-cccccEEEEecCccccccCce
Q 020799 53 QTFSVGDILLFNFTTGQ--------QDVASVTKEAYEN-CNPASPISRKTTGPAEFSL-EAAGDYYFICTLELHCTLGQK 122 (321)
Q Consensus 53 ~~F~vGD~LvF~y~~~~--------hsV~~v~~~~Y~~-C~~~~~~~~~~~G~~~v~L-~~~G~~yFic~~~~HC~~GmK 122 (321)
.+++.||+|+.+..+.. |-+.|......|. -...-+|..-.+=..+|++ ++.|++||=+-...+-..|+.
T Consensus 62 I~~~~GD~v~V~V~N~L~~~ttIHWHGl~q~~t~w~DGv~~TQcPI~PG~sftY~F~~~dq~GT~WYHsH~~~Q~~~Gl~ 141 (596)
T PLN00044 62 LNVTTNWNLVVNVRNALDEPLLLTWHGVQQRKSAWQDGVGGTNCAIPAGWNWTYQFQVKDQVGSFFYAPSTALHRAAGGY 141 (596)
T ss_pred EEEECCCEEEEEEEeCCCCCccEEECCccCCCCccccCCCCCcCCcCCCCcEEEEEEeCCCCceeEeeccchhhhhCcCe
Confidence 47899999999875432 4444432111221 0011123222222247888 479999999998888889999
Q ss_pred eEEEecCCC
Q 020799 123 LAIHVTGPA 131 (321)
Q Consensus 123 l~I~V~~~~ 131 (321)
-.|.|..+.
T Consensus 142 GalII~~~~ 150 (596)
T PLN00044 142 GAITINNRD 150 (596)
T ss_pred eEEEEcCcc
Confidence 999998643
No 47
>PRK02888 nitrous-oxide reductase; Validated
Probab=68.87 E-value=9.9 Score=40.56 Aligned_cols=66 Identities=20% Similarity=0.302 Sum_probs=41.8
Q ss_pred CCeeEeCCEEEEEecCC------CccEEEeCcccccccCCCCCCCccCCCC---cEEEecccccEEEEecCccccc---c
Q 020799 52 MQTFSVGDILLFNFTTG------QQDVASVTKEAYENCNPASPISRKTTGP---AEFSLEAAGDYYFICTLELHCT---L 119 (321)
Q Consensus 52 ~~~F~vGD~LvF~y~~~------~hsV~~v~~~~Y~~C~~~~~~~~~~~G~---~~v~L~~~G~~yFic~~~~HC~---~ 119 (321)
..++++||.+.|...+- .|.... ..|. .......|. .+|+.+++|.|||+|+. .|- .
T Consensus 556 ~i~Vk~GDeVt~~lTN~d~~~DViHGF~I---p~~n------I~~dv~PG~t~svtF~adkPGvy~~~Cte--fCGa~H~ 624 (635)
T PRK02888 556 EFTVKQGDEVTVIVTNLDKVEDLTHGFAI---PNYG------VNMEVAPQATASVTFTADKPGVYWYYCTW--FCHALHM 624 (635)
T ss_pred eEEecCCCEEEEEEEeCCcccccccceee---cccC------ccEEEcCCceEEEEEEcCCCEEEEEECCc--ccccCcc
Confidence 45789999999998752 233332 1111 001112232 46778999999999997 354 4
Q ss_pred CceeEEEec
Q 020799 120 GQKLAIHVT 128 (321)
Q Consensus 120 GmKl~I~V~ 128 (321)
+|+..|.|.
T Consensus 625 ~M~G~~iVe 633 (635)
T PRK02888 625 EMRGRMLVE 633 (635)
T ss_pred cceEEEEEE
Confidence 688888886
No 48
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=65.63 E-value=12 Score=31.30 Aligned_cols=66 Identities=18% Similarity=0.191 Sum_probs=39.9
Q ss_pred ccceeEeCCEEEEeecC--CCCcEEEeCccccccccCCCCccc-ccCCC---eEEEeecCeeEEEEcCCCCCCCCC---C
Q 020799 170 SFYSFFVCDTLVFNFAN--GTQDVAIVPKDVYETCNINSTIAV-FTSSP---VKITLKFPGEYYFTSTYLSHCSLG---Q 240 (321)
Q Consensus 170 ~~~~F~vGD~LvF~y~~--~~h~V~~V~~~~y~~C~~~~p~~~-~~~G~---~~v~L~~~G~~yFic~~~~HC~~G---m 240 (321)
....+..|+.+.|.-.+ -.|+...-... ++. .-.|. ..++.+++|.|++.|.. .|..| |
T Consensus 46 ~~l~lp~g~~v~~~ltS~DViHsf~ip~~~----------~k~d~~PG~~~~~~~~~~~~G~y~~~C~e--~CG~gH~~M 113 (120)
T PF00116_consen 46 NELVLPAGQPVRFHLTSEDVIHSFWIPELG----------IKMDAIPGRTNSVTFTPDKPGTYYGQCAE--YCGAGHSFM 113 (120)
T ss_dssp SEEEEETTSEEEEEEEESSS-EEEEETTCT----------EEEEEBTTCEEEEEEEESSSEEEEEEE-S--SSSTTGGG-
T ss_pred ceecccccceEeEEEEcCCccccccccccC----------cccccccccceeeeeeeccCCcEEEcCcc--ccCcCcCCC
Confidence 45677788888888864 23444431110 111 11233 36788999999999985 78877 8
Q ss_pred eEEEEEe
Q 020799 241 RLAINVT 247 (321)
Q Consensus 241 Kl~I~V~ 247 (321)
+..|.|.
T Consensus 114 ~~~v~VV 120 (120)
T PF00116_consen 114 PGKVIVV 120 (120)
T ss_dssp EEEEEEE
T ss_pred eEEEEEC
Confidence 8877763
No 49
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=62.47 E-value=44 Score=30.15 Aligned_cols=67 Identities=9% Similarity=0.006 Sum_probs=41.7
Q ss_pred cceeEeCCEEEEeecCC--CCcEEEeCccccccccCCCCcccc-cCCC---eEEEeecCeeEEEEcCCCCCCC---CCCe
Q 020799 171 FYSFFVCDTLVFNFANG--TQDVAIVPKDVYETCNINSTIAVF-TSSP---VKITLKFPGEYYFTSTYLSHCS---LGQR 241 (321)
Q Consensus 171 ~~~F~vGD~LvF~y~~~--~h~V~~V~~~~y~~C~~~~p~~~~-~~G~---~~v~L~~~G~~yFic~~~~HC~---~GmK 241 (321)
...+.+|+.+.|.-.+. .|+-..-.. .++.. --|. ..++.+++|.|+..|+. .|. ..|+
T Consensus 118 ~l~vp~g~~v~~~~ts~DV~Hsf~ip~~----------~~k~da~PG~~~~~~~~~~~~G~y~~~c~e--~cG~~h~~M~ 185 (201)
T TIGR02866 118 ELVVPAGTPVRLQVTSKDVIHSFWVPEL----------GGKIDAIPGQYNALWFNADEPGVYYGYCAE--LCGAGHSLML 185 (201)
T ss_pred EEEEEcCCEEEEEEEeCchhhccccccc----------CceEEecCCcEEEEEEEeCCCEEEEEEehh--hCCcCccCCe
Confidence 45778899999887642 233222111 11111 1232 35788999999999997 444 4599
Q ss_pred EEEEEeCC
Q 020799 242 LAINVTGT 249 (321)
Q Consensus 242 l~I~V~~~ 249 (321)
+.|.|...
T Consensus 186 ~~v~v~~~ 193 (201)
T TIGR02866 186 FKVVVVER 193 (201)
T ss_pred EEEEEECH
Confidence 99988753
No 50
>PF02839 CBM_5_12: Carbohydrate binding domain; InterPro: IPR003610 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM5 from CAZY and CBM12 from CAZY. These modules have a core structure consisting of a 3-stranded meander beta-sheet, which contain six aromatic groups that may be important for binding. CBM5/12 is found in proteins such as chitinase A1, chitinase B [], and endoglucanase Z []. The overall topology of the CBM is structurally similar to the C-terminal chitin-binding domains (ChBD) of chitinase A1 and chitinase B, however the binding mechanism for the ChBD may be different from that of the CBM [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0005576 extracellular region; PDB: 1ED7_A 1W1V_A 1E15_B 1UR8_A 1E6Z_B 1E6P_A 1W1T_A 1W1P_B 1UR9_A 1E6R_A ....
Probab=60.63 E-value=5 Score=26.75 Aligned_cols=19 Identities=32% Similarity=0.763 Sum_probs=11.4
Q ss_pred cccccCCCeeEeCCEEEEE
Q 020799 46 YVTWASMQTFSVGDILLFN 64 (321)
Q Consensus 46 Y~~Was~~~F~vGD~LvF~ 64 (321)
|.+|..+++...||++.|+
T Consensus 1 ~p~W~~~~~Y~~Gd~V~~~ 19 (41)
T PF02839_consen 1 YPAWDPGTTYNAGDRVSYN 19 (41)
T ss_dssp --B--TTCEE-TT-EEEET
T ss_pred CCCcCCCCEEcCCCEEEEC
Confidence 5689999999999999863
No 51
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=60.15 E-value=13 Score=31.07 Aligned_cols=65 Identities=20% Similarity=0.326 Sum_probs=39.2
Q ss_pred CCCeeEeCCEEEEEecCC--CccEEEeCcccccccCCCCCCC-ccCCCC---cEEEecccccEEEEecCccccccC---c
Q 020799 51 SMQTFSVGDILLFNFTTG--QQDVASVTKEAYENCNPASPIS-RKTTGP---AEFSLEAAGDYYFICTLELHCTLG---Q 121 (321)
Q Consensus 51 s~~~F~vGD~LvF~y~~~--~hsV~~v~~~~Y~~C~~~~~~~-~~~~G~---~~v~L~~~G~~yFic~~~~HC~~G---m 121 (321)
+...+..|+.+.|+..+. .|+...- + + .++ ..-.|. ..++.+++|.|++.|+. -|-.| |
T Consensus 46 ~~l~lp~g~~v~~~ltS~DViHsf~ip-~--~-------~~k~d~~PG~~~~~~~~~~~~G~y~~~C~e--~CG~gH~~M 113 (120)
T PF00116_consen 46 NELVLPAGQPVRFHLTSEDVIHSFWIP-E--L-------GIKMDAIPGRTNSVTFTPDKPGTYYGQCAE--YCGAGHSFM 113 (120)
T ss_dssp SEEEEETTSEEEEEEEESSS-EEEEET-T--C-------TEEEEEBTTCEEEEEEEESSSEEEEEEE-S--SSSTTGGG-
T ss_pred ceecccccceEeEEEEcCCcccccccc-c--c-------CcccccccccceeeeeeeccCCcEEEcCcc--ccCcCcCCC
Confidence 344678899998887642 3444421 1 1 010 112333 46778999999999997 68776 8
Q ss_pred eeEEEe
Q 020799 122 KLAIHV 127 (321)
Q Consensus 122 Kl~I~V 127 (321)
+..|.|
T Consensus 114 ~~~v~V 119 (120)
T PF00116_consen 114 PGKVIV 119 (120)
T ss_dssp EEEEEE
T ss_pred eEEEEE
Confidence 888776
No 52
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=59.83 E-value=8.1 Score=28.84 Aligned_cols=31 Identities=16% Similarity=0.321 Sum_probs=18.9
Q ss_pred CchhhHHHHHHHHHHHHhhcccccceEEEeeCCC
Q 020799 1 MARTIILAIAVTASMASLLQNTAAETTHVVGGDL 34 (321)
Q Consensus 1 Ma~~~~~~~~~~~~~~~~~~~~aaa~~~~VGg~~ 34 (321)
||++++++.+++++|+++.+ +|-+|.-|+.-
T Consensus 1 MA~Kl~vialLC~aLva~vQ---~APQYa~GeeP 31 (65)
T PF10731_consen 1 MASKLIVIALLCVALVAIVQ---SAPQYAPGEEP 31 (65)
T ss_pred CcchhhHHHHHHHHHHHHHh---cCcccCCCCCC
Confidence 89888777555555544442 23457777653
No 53
>PLN02835 oxidoreductase
Probab=59.30 E-value=1e+02 Score=32.24 Aligned_cols=79 Identities=14% Similarity=0.191 Sum_probs=48.8
Q ss_pred CCeeEeCCEEEEEecCCC--------ccEEEeCcccccc-cCCCCCCCccCCCCcEEEe-cccccEEEEecCccccccCc
Q 020799 52 MQTFSVGDILLFNFTTGQ--------QDVASVTKEAYEN-CNPASPISRKTTGPAEFSL-EAAGDYYFICTLELHCTLGQ 121 (321)
Q Consensus 52 ~~~F~vGD~LvF~y~~~~--------hsV~~v~~~~Y~~-C~~~~~~~~~~~G~~~v~L-~~~G~~yFic~~~~HC~~Gm 121 (321)
..+++.||+|+.+..++. |-+.|......|. -...-++..-.+=..+|++ ++.|++||=|-...+-..|+
T Consensus 61 ~I~~~~GD~v~v~v~N~L~~~ttiHWHGl~~~~~~~~DGv~~tQ~pI~PG~sf~Y~F~~~~q~GT~WYHsH~~~q~~~Gl 140 (539)
T PLN02835 61 RLDVVTNDNIILNLINKLDQPFLLTWNGIKQRKNSWQDGVLGTNCPIPPNSNYTYKFQTKDQIGTFTYFPSTLFHKAAGG 140 (539)
T ss_pred CEEEECCCEEEEEEEeCCCCCCcEEeCCcccCCCCCCCCCccCcCCCCCCCcEEEEEEECCCCEeEEEEeCccchhcCcc
Confidence 357899999998876541 4444432222222 0011133222222246766 47999999998888888999
Q ss_pred eeEEEecCC
Q 020799 122 KLAIHVTGP 130 (321)
Q Consensus 122 Kl~I~V~~~ 130 (321)
.-.|.|..+
T Consensus 141 ~G~lIV~~~ 149 (539)
T PLN02835 141 FGAINVYER 149 (539)
T ss_pred cceeEEeCC
Confidence 999999753
No 54
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=58.44 E-value=20 Score=38.90 Aligned_cols=12 Identities=8% Similarity=-0.075 Sum_probs=5.6
Q ss_pred ccEEEEecCccc
Q 020799 105 GDYYFICTLELH 116 (321)
Q Consensus 105 G~~yFic~~~~H 116 (321)
=++-|+|..-+|
T Consensus 159 ~~k~~~le~v~~ 170 (830)
T KOG1923|consen 159 FQKTFVLEFVET 170 (830)
T ss_pred hhhhHHHHhhcc
Confidence 344455554433
No 55
>PLN02604 oxidoreductase
Probab=56.79 E-value=55 Score=34.44 Aligned_cols=78 Identities=14% Similarity=0.235 Sum_probs=49.0
Q ss_pred CCeeEeCCEEEEEecCCC----ccEEE-----eCcccccccCCCCCCCccCCCC---cEEEecccccEEEEecCcccccc
Q 020799 52 MQTFSVGDILLFNFTTGQ----QDVAS-----VTKEAYENCNPASPISRKTTGP---AEFSLEAAGDYYFICTLELHCTL 119 (321)
Q Consensus 52 ~~~F~vGD~LvF~y~~~~----hsV~~-----v~~~~Y~~C~~~~~~~~~~~G~---~~v~L~~~G~~yFic~~~~HC~~ 119 (321)
..+++.||+|+++..+.. |++.- .....+|. ...-.......|. ..|+++++|++||=|-...|-..
T Consensus 56 ~i~~~~Gd~v~v~v~N~l~~~~~~iH~HG~~~~~~~~~DG-~~~~tq~~i~pg~s~~y~f~~~~~Gt~wyH~H~~~q~~~ 134 (566)
T PLN02604 56 TILAQQGDTVIVELKNSLLTENVAIHWHGIRQIGTPWFDG-TEGVTQCPILPGETFTYEFVVDRPGTYLYHAHYGMQREA 134 (566)
T ss_pred cEEEECCCEEEEEEEeCCCCCCCCEEeCCCCCCCCccccC-CCccccCccCCCCeEEEEEEcCCCEEEEEeeCcHHHHhC
Confidence 468899999999886542 33321 10000111 0000000122333 47788899999999999999999
Q ss_pred CceeEEEecCC
Q 020799 120 GQKLAIHVTGP 130 (321)
Q Consensus 120 GmKl~I~V~~~ 130 (321)
||.-.|.|..+
T Consensus 135 Gl~G~liV~~~ 145 (566)
T PLN02604 135 GLYGSIRVSLP 145 (566)
T ss_pred CCeEEEEEEec
Confidence 99999999864
No 56
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=56.42 E-value=22 Score=36.92 Aligned_cols=13 Identities=23% Similarity=0.340 Sum_probs=6.3
Q ss_pred eeEeCCEEEEeec
Q 020799 173 SFFVCDTLVFNFA 185 (321)
Q Consensus 173 ~F~vGD~LvF~y~ 185 (321)
+...-|+.-|-|+
T Consensus 282 ~l~~~~t~~fi~~ 294 (569)
T KOG3671|consen 282 QLTERDTMKFIYD 294 (569)
T ss_pred cccchhhcccccc
Confidence 3334455555554
No 57
>PF02839 CBM_5_12: Carbohydrate binding domain; InterPro: IPR003610 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM5 from CAZY and CBM12 from CAZY. These modules have a core structure consisting of a 3-stranded meander beta-sheet, which contain six aromatic groups that may be important for binding. CBM5/12 is found in proteins such as chitinase A1, chitinase B [], and endoglucanase Z []. The overall topology of the CBM is structurally similar to the C-terminal chitin-binding domains (ChBD) of chitinase A1 and chitinase B, however the binding mechanism for the ChBD may be different from that of the CBM [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0005576 extracellular region; PDB: 1ED7_A 1W1V_A 1E15_B 1UR8_A 1E6Z_B 1E6P_A 1W1T_A 1W1P_B 1UR9_A 1E6R_A ....
Probab=55.78 E-value=6.9 Score=26.06 Aligned_cols=19 Identities=21% Similarity=0.566 Sum_probs=11.3
Q ss_pred cccccccceeEeCCEEEEe
Q 020799 165 YASWASFYSFFVCDTLVFN 183 (321)
Q Consensus 165 Y~~Wa~~~~F~vGD~LvF~ 183 (321)
|..|..++....||.|.|+
T Consensus 1 ~p~W~~~~~Y~~Gd~V~~~ 19 (41)
T PF02839_consen 1 YPAWDPGTTYNAGDRVSYN 19 (41)
T ss_dssp --B--TTCEE-TT-EEEET
T ss_pred CCCcCCCCEEcCCCEEEEC
Confidence 4679999999999999854
No 58
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=55.25 E-value=30 Score=36.05 Aligned_cols=80 Identities=14% Similarity=0.205 Sum_probs=49.7
Q ss_pred CCeeEeCCEEEEEecCCC----ccEEE--e--Ccccc-cc--cCCCCCCCccCCCCcEEEecccccEEEEecCccccccC
Q 020799 52 MQTFSVGDILLFNFTTGQ----QDVAS--V--TKEAY-EN--CNPASPISRKTTGPAEFSLEAAGDYYFICTLELHCTLG 120 (321)
Q Consensus 52 ~~~F~vGD~LvF~y~~~~----hsV~~--v--~~~~Y-~~--C~~~~~~~~~~~G~~~v~L~~~G~~yFic~~~~HC~~G 120 (321)
..+++.||.|+++..+.. +++.- + ..+.| |. .-..-++....+-...|+++.+|++||-|-...|-..|
T Consensus 33 ~i~~~~Gd~v~v~v~N~l~~~~t~iHwHGl~~~~~~~~DG~~~vtq~~I~PG~s~~y~f~~~~~Gt~wyH~H~~~q~~~G 112 (541)
T TIGR03388 33 TIRAQAGDTIVVELTNKLHTEGVVIHWHGIRQIGTPWADGTAGVTQCAINPGETFIYNFVVDRPGTYFYHGHYGMQRSAG 112 (541)
T ss_pred eEEEEcCCEEEEEEEECCCCCCccEEecCcCCcCCcccCCCCccccCCcCCCCEEEEEEEcCCCEEEEEEecchHHhhcc
Confidence 458999999999887542 22221 1 11111 11 00011221111122478889999999999999999999
Q ss_pred ceeEEEecCCC
Q 020799 121 QKLAIHVTGPA 131 (321)
Q Consensus 121 mKl~I~V~~~~ 131 (321)
|.-.|.|..+.
T Consensus 113 l~G~liV~~~~ 123 (541)
T TIGR03388 113 LYGSLIVDVPD 123 (541)
T ss_pred ceEEEEEecCC
Confidence 99999998653
No 59
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=54.81 E-value=27 Score=36.46 Aligned_cols=80 Identities=15% Similarity=0.110 Sum_probs=49.5
Q ss_pred cceeEeCCEEEEeecCCC----CcEE-----EeCcccccc--ccCCCCcccccCCCeEEEeecCeeEEEEcCCCCCCCCC
Q 020799 171 FYSFFVCDTLVFNFANGT----QDVA-----IVPKDVYET--CNINSTIAVFTSSPVKITLKFPGEYYFTSTYLSHCSLG 239 (321)
Q Consensus 171 ~~~F~vGD~LvF~y~~~~----h~V~-----~V~~~~y~~--C~~~~p~~~~~~G~~~v~L~~~G~~yFic~~~~HC~~G 239 (321)
..+++.||.|++...+.. +++. +......|- ..+--++.-..+-.-.|+++.+|++||-|-...|-..|
T Consensus 33 ~i~~~~Gd~v~v~v~N~l~~~~t~iHwHGl~~~~~~~~DG~~~vtq~~I~PG~s~~y~f~~~~~Gt~wyH~H~~~q~~~G 112 (541)
T TIGR03388 33 TIRAQAGDTIVVELTNKLHTEGVVIHWHGIRQIGTPWADGTAGVTQCAINPGETFIYNFVVDRPGTYFYHGHYGMQRSAG 112 (541)
T ss_pred eEEEEcCCEEEEEEEECCCCCCccEEecCcCCcCCcccCCCCccccCCcCCCCEEEEEEEcCCCEEEEEEecchHHhhcc
Confidence 478999999999886542 2333 111000110 00111222111112368889999999999999999999
Q ss_pred CeEEEEEeCCC
Q 020799 240 QRLAINVTGTS 250 (321)
Q Consensus 240 mKl~I~V~~~~ 250 (321)
|.-.|.|....
T Consensus 113 l~G~liV~~~~ 123 (541)
T TIGR03388 113 LYGSLIVDVPD 123 (541)
T ss_pred ceEEEEEecCC
Confidence 99999998653
No 60
>PLN02168 copper ion binding / pectinesterase
Probab=53.35 E-value=1.2e+02 Score=31.79 Aligned_cols=80 Identities=18% Similarity=0.265 Sum_probs=50.1
Q ss_pred CCeeEeCCEEEEEecCCC--------ccEEEeCcccccc-cCCCCCCCccCCCCcEEEec-ccccEEEEecCccccccCc
Q 020799 52 MQTFSVGDILLFNFTTGQ--------QDVASVTKEAYEN-CNPASPISRKTTGPAEFSLE-AAGDYYFICTLELHCTLGQ 121 (321)
Q Consensus 52 ~~~F~vGD~LvF~y~~~~--------hsV~~v~~~~Y~~-C~~~~~~~~~~~G~~~v~L~-~~G~~yFic~~~~HC~~Gm 121 (321)
..+++.||+|+.+..+.- |-+.|......|. ....-+|..-.+=..+|+++ +.|++||=+-...+=..|+
T Consensus 58 ~I~~~~GD~v~V~v~N~L~~~ttiHWHGl~~~~~~~~DGv~gtQcpI~PG~sftY~F~~~~q~GT~WYHsH~~~Q~~~GL 137 (545)
T PLN02168 58 LLNATANDVINVNIFNNLTEPFLMTWNGLQLRKNSWQDGVRGTNCPILPGTNWTYRFQVKDQIGSYFYFPSLLLQKAAGG 137 (545)
T ss_pred cEEEECCCEEEEEEEeCCCCCccEeeCCccCCCCCCcCCCCCCcCCCCCCCcEEEEEEeCCCCceEEEecChhhhhhCcc
Confidence 357899999999886542 4444432221222 01111332222222478884 7999999998777777899
Q ss_pred eeEEEecCCC
Q 020799 122 KLAIHVTGPA 131 (321)
Q Consensus 122 Kl~I~V~~~~ 131 (321)
.-.|.|..+.
T Consensus 138 ~G~lII~~~~ 147 (545)
T PLN02168 138 YGAIRIYNPE 147 (545)
T ss_pred eeEEEEcCCc
Confidence 9999998654
No 61
>TIGR02228 sigpep_I_arch signal peptidase I, archaeal type. This model represents signal peptidase I from most archaea, a subunit of the eukaryotic endoplasmic reticulum signal peptidase I complex, and an apparent signal peptidase I from a small number of bacteria. It is related to but does not overlap in hits with TIGR02227, the bacterial and mitochondrial signal peptidase I.
Probab=50.19 E-value=56 Score=28.64 Aligned_cols=17 Identities=18% Similarity=0.309 Sum_probs=13.7
Q ss_pred CCeeEeCCEEEEEecCC
Q 020799 52 MQTFSVGDILLFNFTTG 68 (321)
Q Consensus 52 ~~~F~vGD~LvF~y~~~ 68 (321)
...++.||.++|+.+.+
T Consensus 58 ~~~~~~GDIVvf~~~~~ 74 (158)
T TIGR02228 58 PNDIQVGDVITYKSPGF 74 (158)
T ss_pred cCCCCCCCEEEEEECCC
Confidence 45789999999998653
No 62
>cd06555 ASCH_PF0470_like ASC-1 homology domain, subfamily similar to Pyrococcus furiosus Pf0470. The ASCH domain, a small beta-barrel domain found in all three kingdoms of life, resembles the RNA-binding PUA domain and may also interact with RNA. ASCH has been proposed to function as an RNA-binding domain during coactivation, RNA-processing and the regulation of prokaryotic translation.
Probab=48.87 E-value=14 Score=30.59 Aligned_cols=13 Identities=54% Similarity=0.756 Sum_probs=11.3
Q ss_pred CeeEeCCEEEEEe
Q 020799 53 QTFSVGDILLFNF 65 (321)
Q Consensus 53 ~~F~vGD~LvF~y 65 (321)
++|++||.|+|+=
T Consensus 30 ~~ikvGD~I~f~~ 42 (109)
T cd06555 30 QQIKVGDKILFND 42 (109)
T ss_pred hcCCCCCEEEEEE
Confidence 5899999999954
No 63
>PF12961 DUF3850: Domain of Unknown Function with PDB structure (DUF3850)
Probab=46.13 E-value=12 Score=28.84 Aligned_cols=16 Identities=38% Similarity=0.762 Sum_probs=12.6
Q ss_pred CCeeEeCCEEEEE-ecC
Q 020799 52 MQTFSVGDILLFN-FTT 67 (321)
Q Consensus 52 ~~~F~vGD~LvF~-y~~ 67 (321)
.+.|+|||.|+++ |+.
T Consensus 26 DRdf~VGD~L~L~E~~~ 42 (72)
T PF12961_consen 26 DRDFQVGDILVLREWDN 42 (72)
T ss_pred CCCCCCCCEEEEEEecC
Confidence 5789999999984 443
No 64
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=44.61 E-value=73 Score=32.03 Aligned_cols=29 Identities=28% Similarity=0.387 Sum_probs=21.0
Q ss_pred eEEEeecCeeEEEEcCCCCCCCCCCeEEEEEeCC
Q 020799 216 VKITLKFPGEYYFTSTYLSHCSLGQRLAINVTGT 249 (321)
Q Consensus 216 ~~v~L~~~G~~yFic~~~~HC~~GmKl~I~V~~~ 249 (321)
.+++| ++|+|-|+|+. | ..||-.|+|...
T Consensus 90 l~~~L-~pGtY~~~C~~--~--~~~~g~l~Vtg~ 118 (375)
T PRK10378 90 MTANL-QPGEYDMTCGL--L--TNPKGKLIVKGE 118 (375)
T ss_pred EEEec-CCceEEeecCc--C--CCCCceEEEeCC
Confidence 35556 79999999976 4 335777888754
No 65
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=42.91 E-value=26 Score=33.12 Aligned_cols=72 Identities=17% Similarity=0.181 Sum_probs=45.6
Q ss_pred cceeEeCCEEEEeecCC--CCcEEEeCccccccccCCCCcccccCCCeEEEeecCeeEEEEcCCCCCCCCC---CeEEEE
Q 020799 171 FYSFFVCDTLVFNFANG--TQDVAIVPKDVYETCNINSTIAVFTSSPVKITLKFPGEYYFTSTYLSHCSLG---QRLAIN 245 (321)
Q Consensus 171 ~~~F~vGD~LvF~y~~~--~h~V~~V~~~~y~~C~~~~p~~~~~~G~~~v~L~~~G~~yFic~~~~HC~~G---mKl~I~ 245 (321)
...+.+|..+.|+-.+. .|+...-.... +-=...+ ..-...++.+++|.|+.+|.. .|..| |++.|.
T Consensus 138 ~l~lPv~~~V~f~ltS~DViHsF~IP~l~~-k~d~iPG-----~~~~~~~~~~~~G~Y~g~Cae--~CG~gH~~M~~~v~ 209 (247)
T COG1622 138 ELVLPVGRPVRFKLTSADVIHSFWIPQLGG-KIDAIPG-----MTTELWLTANKPGTYRGICAE--YCGPGHSFMRFKVI 209 (247)
T ss_pred eEEEeCCCeEEEEEEechhceeEEecCCCc-eeeecCC-----ceEEEEEecCCCeEEEEEcHh--hcCCCcccceEEEE
Confidence 46888999999999753 24443322110 0000000 112236788999999999985 66655 999999
Q ss_pred EeCCC
Q 020799 246 VTGTS 250 (321)
Q Consensus 246 V~~~~ 250 (321)
|....
T Consensus 210 vvs~~ 214 (247)
T COG1622 210 VVSQE 214 (247)
T ss_pred EEcHH
Confidence 98764
No 66
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=40.57 E-value=25 Score=33.27 Aligned_cols=30 Identities=23% Similarity=0.445 Sum_probs=25.5
Q ss_pred EEEecccccEEEEecCccccccC---ceeEEEecC
Q 020799 98 EFSLEAAGDYYFICTLELHCTLG---QKLAIHVTG 129 (321)
Q Consensus 98 ~v~L~~~G~~yFic~~~~HC~~G---mKl~I~V~~ 129 (321)
.++.+++|.|+.+|.. .|..| |++.|.|.+
T Consensus 180 ~~~~~~~G~Y~g~Cae--~CG~gH~~M~~~v~vvs 212 (247)
T COG1622 180 WLTANKPGTYRGICAE--YCGPGHSFMRFKVIVVS 212 (247)
T ss_pred EEecCCCeEEEEEcHh--hcCCCcccceEEEEEEc
Confidence 5678899999999996 67755 999999985
No 67
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=39.70 E-value=63 Score=34.28 Aligned_cols=85 Identities=15% Similarity=0.316 Sum_probs=52.2
Q ss_pred CcCCCCCCcCcccccCCCeeEeCCEEEEEecCC---CccE------EEeCcc--cccccCCCCCCCccCCCC---cEEEe
Q 020799 36 WQIPPGGAIAYVTWASMQTFSVGDILLFNFTTG---QQDV------ASVTKE--AYENCNPASPISRKTTGP---AEFSL 101 (321)
Q Consensus 36 W~~~~~~~~~Y~~Was~~~F~vGD~LvF~y~~~---~hsV------~~v~~~--~Y~~C~~~~~~~~~~~G~---~~v~L 101 (321)
|++.- ..|.. ....+++.||.+.+.+.+. .|.+ +++... .|..= ...+. ...|. ..|..
T Consensus 488 wtiNG---~~~~~-~~pl~v~~Gervri~l~N~t~~~HpmHlHG~~f~v~~~~G~~~~~--~dTv~-V~Pg~t~~~~f~a 560 (587)
T TIGR01480 488 WSFDG---EAFGL-KTPLRFNYGERLRVVLVNDTMMAHPIHLHGMWSELEDGQGEFQVR--KHTVD-VPPGGKRSFRVTA 560 (587)
T ss_pred EEECC---ccCCC-CCceEecCCCEEEEEEECCCCCCcceeEcCceeeeecCCCccccc--CCcee-eCCCCEEEEEEEC
Confidence 88752 23433 2356899999999999764 3433 233111 11100 00111 12222 36777
Q ss_pred cccccEEEEecCccccccCceeEEEe
Q 020799 102 EAAGDYYFICTLELHCTLGQKLAIHV 127 (321)
Q Consensus 102 ~~~G~~yFic~~~~HC~~GmKl~I~V 127 (321)
+.+|+++|=|-+..|=+.||--.|.|
T Consensus 561 d~pG~w~~HCH~l~H~~~GM~~~~~v 586 (587)
T TIGR01480 561 DALGRWAYHCHMLLHMEAGMFREVTV 586 (587)
T ss_pred CCCeEEEEcCCCHHHHhCcCcEEEEe
Confidence 88999999999999999999877776
No 68
>MTH00047 COX2 cytochrome c oxidase subunit II; Provisional
Probab=39.29 E-value=37 Score=30.89 Aligned_cols=31 Identities=23% Similarity=0.415 Sum_probs=25.7
Q ss_pred EEEecccccEEEEecCccccccC---ceeEEEecCC
Q 020799 98 EFSLEAAGDYYFICTLELHCTLG---QKLAIHVTGP 130 (321)
Q Consensus 98 ~v~L~~~G~~yFic~~~~HC~~G---mKl~I~V~~~ 130 (321)
.++.+++|.++..|+. -|..| |++.|.|.++
T Consensus 159 ~~~~~~~G~y~g~C~e--~CG~~H~~M~~~v~v~~~ 192 (194)
T MTH00047 159 FFCPDRHGVFVGYCSE--LCGVGHSYMPIVIEVVDV 192 (194)
T ss_pred EEEcCCCEEEEEEeeh--hhCcCcccCcEEEEEEcC
Confidence 5567889999999996 68765 9999999865
No 69
>MTH00047 COX2 cytochrome c oxidase subunit II; Provisional
Probab=38.92 E-value=44 Score=30.34 Aligned_cols=31 Identities=16% Similarity=0.210 Sum_probs=25.4
Q ss_pred EEEeecCeeEEEEcCCCCCCCCC---CeEEEEEeCC
Q 020799 217 KITLKFPGEYYFTSTYLSHCSLG---QRLAINVTGT 249 (321)
Q Consensus 217 ~v~L~~~G~~yFic~~~~HC~~G---mKl~I~V~~~ 249 (321)
.++.+++|.|+..|.. .|..| |++.|.|...
T Consensus 159 ~~~~~~~G~y~g~C~e--~CG~~H~~M~~~v~v~~~ 192 (194)
T MTH00047 159 FFCPDRHGVFVGYCSE--LCGVGHSYMPIVIEVVDV 192 (194)
T ss_pred EEEcCCCEEEEEEeeh--hhCcCcccCcEEEEEEcC
Confidence 5667899999999984 77765 9999988765
No 70
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=36.87 E-value=84 Score=33.39 Aligned_cols=85 Identities=13% Similarity=0.232 Sum_probs=52.5
Q ss_pred cccCCCCCcccccccccceeEeCCEEEEeecCC---CCcEE------EeCccc--cccccCCCCcccccCCC---eEEEe
Q 020799 155 WAIPPGGALFYASWASFYSFFVCDTLVFNFANG---TQDVA------IVPKDV--YETCNINSTIAVFTSSP---VKITL 220 (321)
Q Consensus 155 W~~~~~~~~~Y~~Wa~~~~F~vGD~LvF~y~~~---~h~V~------~V~~~~--y~~C~~~~p~~~~~~G~---~~v~L 220 (321)
|+++.. .|.. ....+++.||.+.+.+.+. .|.++ ++...+ |..= ...+ ...-|. ..|.+
T Consensus 488 wtiNG~---~~~~-~~pl~v~~Gervri~l~N~t~~~HpmHlHG~~f~v~~~~G~~~~~--~dTv-~V~Pg~t~~~~f~a 560 (587)
T TIGR01480 488 WSFDGE---AFGL-KTPLRFNYGERLRVVLVNDTMMAHPIHLHGMWSELEDGQGEFQVR--KHTV-DVPPGGKRSFRVTA 560 (587)
T ss_pred EEECCc---cCCC-CCceEecCCCEEEEEEECCCCCCcceeEcCceeeeecCCCccccc--CCce-eeCCCCEEEEEEEC
Confidence 887532 2332 2357899999999999753 34333 232211 1100 0011 112232 36778
Q ss_pred ecCeeEEEEcCCCCCCCCCCeEEEEE
Q 020799 221 KFPGEYYFTSTYLSHCSLGQRLAINV 246 (321)
Q Consensus 221 ~~~G~~yFic~~~~HC~~GmKl~I~V 246 (321)
+.+|+.+|=|-...|=+.||--.|.|
T Consensus 561 d~pG~w~~HCH~l~H~~~GM~~~~~v 586 (587)
T TIGR01480 561 DALGRWAYHCHMLLHMEAGMFREVTV 586 (587)
T ss_pred CCCeEEEEcCCCHHHHhCcCcEEEEe
Confidence 89999999999999999999887776
No 71
>PLN02604 oxidoreductase
Probab=36.73 E-value=81 Score=33.16 Aligned_cols=34 Identities=21% Similarity=0.329 Sum_probs=30.2
Q ss_pred EEEeecCeeEEEEcCCCCCCCCCCeEEEEEeCCC
Q 020799 217 KITLKFPGEYYFTSTYLSHCSLGQRLAINVTGTS 250 (321)
Q Consensus 217 ~v~L~~~G~~yFic~~~~HC~~GmKl~I~V~~~~ 250 (321)
.|+++.+|++||=|-...|-..||.-.|.|....
T Consensus 113 ~f~~~~~Gt~wyH~H~~~q~~~Gl~G~liV~~~~ 146 (566)
T PLN02604 113 EFVVDRPGTYLYHAHYGMQREAGLYGSIRVSLPR 146 (566)
T ss_pred EEEcCCCEEEEEeeCcHHHHhCCCeEEEEEEecC
Confidence 6788999999999999999999999999998543
No 72
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=35.95 E-value=43 Score=30.19 Aligned_cols=30 Identities=23% Similarity=0.360 Sum_probs=24.6
Q ss_pred EEEecccccEEEEecCccccc---cCceeEEEecC
Q 020799 98 EFSLEAAGDYYFICTLELHCT---LGQKLAIHVTG 129 (321)
Q Consensus 98 ~v~L~~~G~~yFic~~~~HC~---~GmKl~I~V~~ 129 (321)
.++.+++|.|++.|+. .|. ..|++.|.|.+
T Consensus 160 ~~~~~~~G~y~~~c~e--~cG~~h~~M~~~v~v~~ 192 (201)
T TIGR02866 160 WFNADEPGVYYGYCAE--LCGAGHSLMLFKVVVVE 192 (201)
T ss_pred EEEeCCCEEEEEEehh--hCCcCccCCeEEEEEEC
Confidence 5678899999999997 454 45999999885
No 73
>PLN02191 L-ascorbate oxidase
Probab=34.82 E-value=2.3e+02 Score=29.91 Aligned_cols=78 Identities=13% Similarity=0.161 Sum_probs=47.8
Q ss_pred CCeeEeCCEEEEEecCCC---------ccEEEeCccccccc-C-CCCCCCccCCCCcEEEecccccEEEEecCccccccC
Q 020799 52 MQTFSVGDILLFNFTTGQ---------QDVASVTKEAYENC-N-PASPISRKTTGPAEFSLEAAGDYYFICTLELHCTLG 120 (321)
Q Consensus 52 ~~~F~vGD~LvF~y~~~~---------hsV~~v~~~~Y~~C-~-~~~~~~~~~~G~~~v~L~~~G~~yFic~~~~HC~~G 120 (321)
..+++.||+|+.+..+.. |-+.+-....+|.= . ..-++....+-...|++++.|++||=|-...+-..|
T Consensus 55 ~i~~~~Gd~v~v~v~N~l~~~~tsiHwHGl~~~~~~~~DGv~gvtq~pI~PG~s~~Y~f~~~~~GT~wYHsH~~~q~~~G 134 (574)
T PLN02191 55 TIDAVAGDTIVVHLTNKLTTEGLVIHWHGIRQKGSPWADGAAGVTQCAINPGETFTYKFTVEKPGTHFYHGHYGMQRSAG 134 (574)
T ss_pred eEEEEcCCEEEEEEEECCCCCCccEECCCCCCCCCccccCCCccccCCcCCCCeEEEEEECCCCeEEEEeeCcHHHHhCC
Confidence 357899999998876542 22222111111110 0 001221111112478888999999999998888999
Q ss_pred ceeEEEecC
Q 020799 121 QKLAIHVTG 129 (321)
Q Consensus 121 mKl~I~V~~ 129 (321)
|.-.|.|..
T Consensus 135 l~G~liV~~ 143 (574)
T PLN02191 135 LYGSLIVDV 143 (574)
T ss_pred CEEEEEEcc
Confidence 999999974
No 74
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=33.85 E-value=1.2e+02 Score=31.90 Aligned_cols=109 Identities=14% Similarity=0.129 Sum_probs=64.5
Q ss_pred ccccccCceeEEEecCCCCCCCCCC--CCCCC--ceeeeecCccccccCCCCCcccccccccceeEeCCEEEEeecCCCC
Q 020799 114 ELHCTLGQKLAIHVTGPAPQPSPGP--SLPRT--PVNYTVGGNIGWAIPPGGALFYASWASFYSFFVCDTLVFNFANGTQ 189 (321)
Q Consensus 114 ~~HC~~GmKl~I~V~~~~p~p~p~~--~p~ss--a~~~~VGg~~gW~~~~~~~~~Y~~Wa~~~~F~vGD~LvF~y~~~~h 189 (321)
..|+-..+++.--+.+++|.|+-.. .|-.. ++...+ |..+- .....=.+.++|.--|.++|+|++...
T Consensus 159 ~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri-----~~~~~---~~~~~~~a~ksFFkadkvqm~WN~~gt 230 (566)
T KOG2315|consen 159 IQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRI-----YKYPE---EGQHQPVANKSFFKADKVQMKWNKLGT 230 (566)
T ss_pred eeeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEE-----ecccc---ccccchhhhccccccceeEEEeccCCc
Confidence 4577777777777777665442211 01111 111111 33331 123333467999999999999999889
Q ss_pred cEEEeCccccccccCCCCc----ccc-cCCC-eEEEeecCeeEEEEc
Q 020799 190 DVAIVPKDVYETCNINSTI----AVF-TSSP-VKITLKFPGEYYFTS 230 (321)
Q Consensus 190 ~V~~V~~~~y~~C~~~~p~----~~~-~~G~-~~v~L~~~G~~yFic 230 (321)
.++.+...|.|.-|.+-.. -.+ .+|+ ..|.|++.|+.|=+|
T Consensus 231 ~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~ 277 (566)
T KOG2315|consen 231 ALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVT 277 (566)
T ss_pred eEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEE
Confidence 9998877777765544321 111 2354 478888888777554
No 75
>PF12238 MSA-2c: Merozoite surface antigen 2c; InterPro: IPR021060 This family of proteins are restricted to the apicomplexan Babesia bovis. Proteins in this entry are typically between 263 and 318 amino acids in length and plasma membrane glycoproteins. These antigens present on the merozoite surface (MSA) and are involved in the parasite invasion of the bovine erythrocyte. MSA-2c has been suggested as a possible antigen for a vaccine candidate [].
Probab=30.75 E-value=1.3e+02 Score=27.70 Aligned_cols=7 Identities=29% Similarity=0.534 Sum_probs=3.2
Q ss_pred ccccchh
Q 020799 296 PCQVVGG 302 (321)
Q Consensus 296 ~~~~~~g 302 (321)
++...||
T Consensus 195 sSFTfGG 201 (205)
T PF12238_consen 195 SSFTFGG 201 (205)
T ss_pred CceecCC
Confidence 4444444
No 76
>PRK13838 conjugal transfer pilin processing protease TraF; Provisional
Probab=29.45 E-value=41 Score=29.98 Aligned_cols=15 Identities=20% Similarity=0.370 Sum_probs=12.7
Q ss_pred CCeeEeCCEEEEEec
Q 020799 52 MQTFSVGDILLFNFT 66 (321)
Q Consensus 52 ~~~F~vGD~LvF~y~ 66 (321)
....+.||.++|+-.
T Consensus 48 ~~~~~rGDiVvf~~P 62 (176)
T PRK13838 48 DRPVAVGDLVFICPP 62 (176)
T ss_pred CCCCCCCcEEEEECC
Confidence 468999999999864
No 77
>PF09792 But2: Ubiquitin 3 binding protein But2 C-terminal domain; InterPro: IPR018620 This entry represents a presumed C-terminal domain of ubiquitin 3 binding proteins (But2). But2 is conserved in yeasts. It binds to Uba3 and is involved in the NEDD8 signalling pathway [].
Probab=29.45 E-value=1.8e+02 Score=25.15 Aligned_cols=30 Identities=27% Similarity=0.631 Sum_probs=24.8
Q ss_pred EEEecccccEEEEecCccccccCceeEEEecCC
Q 020799 98 EFSLEAAGDYYFICTLELHCTLGQKLAIHVTGP 130 (321)
Q Consensus 98 ~v~L~~~G~~yFic~~~~HC~~GmKl~I~V~~~ 130 (321)
++++.. |..|-|.. ..|..||++...+...
T Consensus 100 ~~~~~p-G~~y~i~~--f~Cp~g~~v~ye~~~~ 129 (143)
T PF09792_consen 100 TFTVSP-GNSYVINT--FPCPAGQAVSYEMSSA 129 (143)
T ss_pred ceEECC-CCceEeCc--EeCCCCCEEEEEEEec
Confidence 677875 99999997 4799999988888753
No 78
>PLN02191 L-ascorbate oxidase
Probab=29.18 E-value=1.3e+02 Score=31.83 Aligned_cols=78 Identities=17% Similarity=0.133 Sum_probs=47.0
Q ss_pred cceeEeCCEEEEeecCCC---------CcEEEeCccccccc--cCCCCcccccCCCeEEEeecCeeEEEEcCCCCCCCCC
Q 020799 171 FYSFFVCDTLVFNFANGT---------QDVAIVPKDVYETC--NINSTIAVFTSSPVKITLKFPGEYYFTSTYLSHCSLG 239 (321)
Q Consensus 171 ~~~F~vGD~LvF~y~~~~---------h~V~~V~~~~y~~C--~~~~p~~~~~~G~~~v~L~~~G~~yFic~~~~HC~~G 239 (321)
..+++.||+|+.+..+.. |-+.+-....+|-= .+--+|.-..+=.-.|+++++|+|||=|-...+-..|
T Consensus 55 ~i~~~~Gd~v~v~v~N~l~~~~tsiHwHGl~~~~~~~~DGv~gvtq~pI~PG~s~~Y~f~~~~~GT~wYHsH~~~q~~~G 134 (574)
T PLN02191 55 TIDAVAGDTIVVHLTNKLTTEGLVIHWHGIRQKGSPWADGAAGVTQCAINPGETFTYKFTVEKPGTHFYHGHYGMQRSAG 134 (574)
T ss_pred eEEEEcCCEEEEEEEECCCCCCccEECCCCCCCCCccccCCCccccCCcCCCCeEEEEEECCCCeEEEEeeCcHHHHhCC
Confidence 368889999988776532 22222111111100 0001222111112368889999999999998888999
Q ss_pred CeEEEEEeC
Q 020799 240 QRLAINVTG 248 (321)
Q Consensus 240 mKl~I~V~~ 248 (321)
|.-.|.|..
T Consensus 135 l~G~liV~~ 143 (574)
T PLN02191 135 LYGSLIVDV 143 (574)
T ss_pred CEEEEEEcc
Confidence 999999964
No 79
>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]
Probab=28.00 E-value=4.4e+02 Score=26.76 Aligned_cols=15 Identities=27% Similarity=0.171 Sum_probs=8.5
Q ss_pred CCCCCCCCeEEEEEe
Q 020799 233 LSHCSLGQRLAINVT 247 (321)
Q Consensus 233 ~~HC~~GmKl~I~V~ 247 (321)
++.-.-||||...=.
T Consensus 134 gdtV~~g~~la~i~~ 148 (457)
T KOG0559|consen 134 GDTVTPGQKLAKISP 148 (457)
T ss_pred CCcccCCceeEEecC
Confidence 344556777765443
No 80
>PRK09723 putative fimbrial-like adhesin protein; Provisional
Probab=27.11 E-value=3.3e+02 Score=27.90 Aligned_cols=13 Identities=23% Similarity=0.434 Sum_probs=9.2
Q ss_pred ccceEEEeeCCCC
Q 020799 23 AAETTHVVGGDLG 35 (321)
Q Consensus 23 aaa~~~~VGg~~G 35 (321)
.-...++||+..|
T Consensus 25 ~~~~~~~vg~~~~ 37 (421)
T PRK09723 25 DDNVSYIVGNYYG 37 (421)
T ss_pred cCceEEEEccccc
Confidence 3456799998655
No 81
>PLN02792 oxidoreductase
Probab=26.57 E-value=1.9e+02 Score=30.30 Aligned_cols=83 Identities=16% Similarity=0.275 Sum_probs=0.0
Q ss_pred eeEeCCEEEEEecCC--------CccEEEeCcccccc-cCCCCCCCccCCCCcEEEe-cccccEEEEecCccccccCcee
Q 020799 54 TFSVGDILLFNFTTG--------QQDVASVTKEAYEN-CNPASPISRKTTGPAEFSL-EAAGDYYFICTLELHCTLGQKL 123 (321)
Q Consensus 54 ~F~vGD~LvF~y~~~--------~hsV~~v~~~~Y~~-C~~~~~~~~~~~G~~~v~L-~~~G~~yFic~~~~HC~~GmKl 123 (321)
+++.||+|+.+..+. -|-+.|......|. -...-+|..-.+=..+|++ ++.|++||=+-...+-..|+.-
T Consensus 50 ~~~~GD~v~V~v~N~L~~~ttiHWHGl~q~~~~~~DGv~~tqcPI~PG~sftY~F~~~~q~GT~WYHsH~~~q~~~Gl~G 129 (536)
T PLN02792 50 RSLTNDNLVINVHNDLDEPFLLSWNGVHMRKNSYQDGVYGTTCPIPPGKNYTYDFQVKDQVGSYFYFPSLAVQKAAGGYG 129 (536)
T ss_pred EEECCCEEEEEEEeCCCCCcCEeCCCcccCCCCccCCCCCCcCccCCCCcEEEEEEeCCCccceEEecCcchhhhccccc
Q ss_pred EEEecCCCCCCCC
Q 020799 124 AIHVTGPAPQPSP 136 (321)
Q Consensus 124 ~I~V~~~~p~p~p 136 (321)
.+.|......+.|
T Consensus 130 ~liI~~~~~~~~p 142 (536)
T PLN02792 130 SLRIYSLPRIPVP 142 (536)
T ss_pred ceEEeCCcccCcC
No 82
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=26.47 E-value=1.9e+02 Score=30.11 Aligned_cols=82 Identities=16% Similarity=0.171 Sum_probs=0.0
Q ss_pred eeEeCCEEEEEecCC--------CccEEEeCccccc--ccCCCCCCCccCCCCcEEEe-cccccEEEEecCccccccCce
Q 020799 54 TFSVGDILLFNFTTG--------QQDVASVTKEAYE--NCNPASPISRKTTGPAEFSL-EAAGDYYFICTLELHCTLGQK 122 (321)
Q Consensus 54 ~F~vGD~LvF~y~~~--------~hsV~~v~~~~Y~--~C~~~~~~~~~~~G~~~v~L-~~~G~~yFic~~~~HC~~GmK 122 (321)
+++.||+|+.+..+. -|.+.|......| ..-..-+|....+-..+|++ +..|++||=|-. .+...||.
T Consensus 37 ~~~~GD~v~v~v~N~l~~~tsiHwHGl~q~~~~~~DGv~~vTq~pI~PG~s~~Y~f~~~~~~GT~WYHsH~-~~~~~Gl~ 115 (539)
T TIGR03389 37 YAREGDTVIVNVTNNVQYNVTIHWHGVRQLRNGWADGPAYITQCPIQPGQSYVYNFTITGQRGTLWWHAHI-SWLRATVY 115 (539)
T ss_pred EEEcCCEEEEEEEeCCCCCeeEecCCCCCCCCCCCCCCcccccCCcCCCCeEEEEEEecCCCeeEEEecCc-hhhhccce
Q ss_pred eEEEecCCCCCCCC
Q 020799 123 LAIHVTGPAPQPSP 136 (321)
Q Consensus 123 l~I~V~~~~p~p~p 136 (321)
-.|.|..+...+-|
T Consensus 116 G~lIV~~~~~~~~~ 129 (539)
T TIGR03389 116 GAIVILPKPGVPYP 129 (539)
T ss_pred EEEEEcCCCCCCCC
No 83
>PF05382 Amidase_5: Bacteriophage peptidoglycan hydrolase ; InterPro: IPR008044 This entry is represented by Bacteriophage SFi21, lysin (Cell wall hydrolase; 3.5.1.28 from EC). At least one of proteins in this entry, the Pal protein from the pneumococcal bacteriophage Dp-1 (O03979 from SWISSPROT) has been shown to be an N-acetylmuramoyl-L-alanine amidase []. According to the known modular structure of this and other peptidoglycan hydrolases from the pneumococcal system, the active site should reside within this domain while a C-terminal domain binds to the choline residues of the cell wall teichoic acids [, ].
Probab=26.09 E-value=1.5e+02 Score=25.78 Aligned_cols=35 Identities=17% Similarity=0.349 Sum_probs=28.1
Q ss_pred CeeEeCCEEEEEec-----CCCccEEEeCcccccccCCCC
Q 020799 53 QTFSVGDILLFNFT-----TGQQDVASVTKEAYENCNPAS 87 (321)
Q Consensus 53 ~~F~vGD~LvF~y~-----~~~hsV~~v~~~~Y~~C~~~~ 87 (321)
...+-||++++.-. ...|..+-++....-.|+...
T Consensus 74 ~~~q~GDI~I~g~~g~S~G~~GHtgif~~~~~iIhc~y~~ 113 (145)
T PF05382_consen 74 WNLQRGDIFIWGRRGNSAGAGGHTGIFMDNDTIIHCNYGA 113 (145)
T ss_pred ccccCCCEEEEcCCCCCCCCCCeEEEEeCCCcEEEecCCC
Confidence 46899999998664 246999999888889999743
No 84
>PF05382 Amidase_5: Bacteriophage peptidoglycan hydrolase ; InterPro: IPR008044 This entry is represented by Bacteriophage SFi21, lysin (Cell wall hydrolase; 3.5.1.28 from EC). At least one of proteins in this entry, the Pal protein from the pneumococcal bacteriophage Dp-1 (O03979 from SWISSPROT) has been shown to be an N-acetylmuramoyl-L-alanine amidase []. According to the known modular structure of this and other peptidoglycan hydrolases from the pneumococcal system, the active site should reside within this domain while a C-terminal domain binds to the choline residues of the cell wall teichoic acids [, ].
Probab=25.28 E-value=1.5e+02 Score=25.86 Aligned_cols=35 Identities=14% Similarity=0.305 Sum_probs=27.9
Q ss_pred ceeEeCCEEEEeec-----CCCCcEEEeCccccccccCCC
Q 020799 172 YSFFVCDTLVFNFA-----NGTQDVAIVPKDVYETCNINS 206 (321)
Q Consensus 172 ~~F~vGD~LvF~y~-----~~~h~V~~V~~~~y~~C~~~~ 206 (321)
...+-||++++.-. ...|+.+.+++.....|+-..
T Consensus 74 ~~~q~GDI~I~g~~g~S~G~~GHtgif~~~~~iIhc~y~~ 113 (145)
T PF05382_consen 74 WNLQRGDIFIWGRRGNSAGAGGHTGIFMDNDTIIHCNYGA 113 (145)
T ss_pred ccccCCCEEEEcCCCCCCCCCCeEEEEeCCCcEEEecCCC
Confidence 46899999998665 346999999988899998633
No 85
>MTH00140 COX2 cytochrome c oxidase subunit II; Provisional
Probab=25.14 E-value=1e+02 Score=28.47 Aligned_cols=31 Identities=16% Similarity=0.310 Sum_probs=25.2
Q ss_pred EEEeecCeeEEEEcCCCCCCCCC---CeEEEEEeCC
Q 020799 217 KITLKFPGEYYFTSTYLSHCSLG---QRLAINVTGT 249 (321)
Q Consensus 217 ~v~L~~~G~~yFic~~~~HC~~G---mKl~I~V~~~ 249 (321)
.++.+++|.|+..|.. -|..| |++.|.|...
T Consensus 183 ~~~~~~~g~y~~~C~e--~CG~~H~~M~~~v~v~~~ 216 (228)
T MTH00140 183 SFEPKRPGVFYGQCSE--ICGANHSFMPIVVEAVPL 216 (228)
T ss_pred EEEeCCCEEEEEECcc--ccCcCcCCCeEEEEEECH
Confidence 5677899999999985 77776 8888888753
No 86
>PLN02168 copper ion binding / pectinesterase
Probab=24.76 E-value=2.2e+02 Score=30.03 Aligned_cols=80 Identities=16% Similarity=0.174 Sum_probs=48.4
Q ss_pred cceeEeCCEEEEeecCCC--------CcEEEeCcccccc-ccCCCCcccccCCCeEEEee-cCeeEEEEcCCCCCCCCCC
Q 020799 171 FYSFFVCDTLVFNFANGT--------QDVAIVPKDVYET-CNINSTIAVFTSSPVKITLK-FPGEYYFTSTYLSHCSLGQ 240 (321)
Q Consensus 171 ~~~F~vGD~LvF~y~~~~--------h~V~~V~~~~y~~-C~~~~p~~~~~~G~~~v~L~-~~G~~yFic~~~~HC~~Gm 240 (321)
..+++.||+|+.+..+.. |-+.|-.....|- ..+--||.--.+=.-+|+++ ++|+|||=+-...+=..|+
T Consensus 58 ~I~~~~GD~v~V~v~N~L~~~ttiHWHGl~~~~~~~~DGv~gtQcpI~PG~sftY~F~~~~q~GT~WYHsH~~~Q~~~GL 137 (545)
T PLN02168 58 LLNATANDVINVNIFNNLTEPFLMTWNGLQLRKNSWQDGVRGTNCPILPGTNWTYRFQVKDQIGSYFYFPSLLLQKAAGG 137 (545)
T ss_pred cEEEECCCEEEEEEEeCCCCCccEeeCCccCCCCCCcCCCCCCcCCCCCCCcEEEEEEeCCCCceEEEecChhhhhhCcc
Confidence 368889999988886532 4444432211111 00111333211122378884 7999999997776667799
Q ss_pred eEEEEEeCCC
Q 020799 241 RLAINVTGTS 250 (321)
Q Consensus 241 Kl~I~V~~~~ 250 (321)
.-.|.|....
T Consensus 138 ~G~lII~~~~ 147 (545)
T PLN02168 138 YGAIRIYNPE 147 (545)
T ss_pred eeEEEEcCCc
Confidence 9999997543
No 87
>PF02362 B3: B3 DNA binding domain; InterPro: IPR003340 Two DNA binding proteins, RAV1 and RAV2 from Arabidopsis thaliana contain two distinct amino acid sequence domains found only in higher plant species. The N-terminal regions of RAV1 and RAV2 are homologous to the AP2 DNA-binding domain (see IPR001471 from INTERPRO) present in a family of transcription factors, while the C-terminal region exhibits homology to the highly conserved C-terminal domain, designated B3, of VP1/ABI3 transcription factors []. The AP2 and B3-like domains of RAV1 bind autonomously to the CAACA and CACCTG motifs, respectively, and together achieve a high affinity and specificity of binding. It has been suggested that the AP2 and B3-like domains of RAV1 are connected by a highly flexible structure enabling the two domains to bind to the CAACA and CACCTG motifs in various spacings and orientations [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1WID_A 1YEL_A.
Probab=24.68 E-value=49 Score=25.56 Aligned_cols=19 Identities=16% Similarity=0.102 Sum_probs=12.3
Q ss_pred cccceeEeCCEEEEeecCC
Q 020799 169 ASFYSFFVCDTLVFNFANG 187 (321)
Q Consensus 169 a~~~~F~vGD~LvF~y~~~ 187 (321)
+..+.+++||.++|.+...
T Consensus 69 v~~n~L~~GD~~~F~~~~~ 87 (100)
T PF02362_consen 69 VRDNGLKEGDVCVFELIGN 87 (100)
T ss_dssp HHHCT--TT-EEEEEE-SS
T ss_pred HHHcCCCCCCEEEEEEecC
Confidence 4578999999999999853
No 88
>PRK09752 adhesin; Provisional
Probab=24.62 E-value=86 Score=36.07 Aligned_cols=9 Identities=33% Similarity=0.460 Sum_probs=4.6
Q ss_pred CCccEEEeC
Q 020799 68 GQQDVASVT 76 (321)
Q Consensus 68 ~~hsV~~v~ 76 (321)
.+|++.+++
T Consensus 603 ~~~~~~~~t 611 (1250)
T PRK09752 603 QQESVMEIT 611 (1250)
T ss_pred cccceEEEE
Confidence 355555553
No 89
>COG3889 Predicted solute binding protein [General function prediction only]
Probab=24.40 E-value=1e+02 Score=33.87 Aligned_cols=11 Identities=36% Similarity=0.637 Sum_probs=4.6
Q ss_pred HHHHHHHHHhh
Q 020799 306 TILSIIAVALI 316 (321)
Q Consensus 306 ~~l~~~~~~~~ 316 (321)
.+++++|.+||
T Consensus 856 iiv~LaAla~l 866 (872)
T COG3889 856 IIVGLAALALL 866 (872)
T ss_pred HHHHHHHHHHH
Confidence 34444344444
No 90
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=23.97 E-value=2.2e+02 Score=30.49 Aligned_cols=8 Identities=13% Similarity=0.302 Sum_probs=3.5
Q ss_pred CeEEEEEe
Q 020799 240 QRLAINVT 247 (321)
Q Consensus 240 mKl~I~V~ 247 (321)
-||.+.|.
T Consensus 506 ~~~~~~~~ 513 (620)
T PRK14948 506 IKLNLESQ 513 (620)
T ss_pred eEEEEEec
Confidence 34444443
No 91
>smart00495 ChtBD3 Chitin-binding domain type 3.
Probab=23.79 E-value=48 Score=21.92 Aligned_cols=18 Identities=17% Similarity=0.632 Sum_probs=14.5
Q ss_pred cccccCCCeeEeCCEEEE
Q 020799 46 YVTWASMQTFSVGDILLF 63 (321)
Q Consensus 46 Y~~Was~~~F~vGD~LvF 63 (321)
|.+|..++.-..||++.+
T Consensus 1 ~~~W~~~~~Y~~Gd~V~~ 18 (41)
T smart00495 1 APAWQAGTVYTAGDVVSY 18 (41)
T ss_pred CCccCCCCcCcCCCEEEE
Confidence 457888888888998875
No 92
>PF10377 ATG11: Autophagy-related protein 11; InterPro: IPR019460 This family consists of proteins involved in telomere maintenance. In Schizosaccharomyces pombe (fission yeast) this protein is called Taf1 (taz1 interacting factor) and is part of the telomere cap complex. In Saccharomyces cerevisiae (baker's yeast) this protein is called ATG11 and is known to be involved in vacuolar targeting and peroxisome degradation [, ].
Probab=22.53 E-value=55 Score=27.77 Aligned_cols=18 Identities=22% Similarity=0.257 Sum_probs=15.7
Q ss_pred ceeEeCCEEEEeecCCCC
Q 020799 172 YSFFVCDTLVFNFANGTQ 189 (321)
Q Consensus 172 ~~F~vGD~LvF~y~~~~h 189 (321)
++|++||.+.|-++...|
T Consensus 41 ~~f~~GDlvLflpt~~~~ 58 (129)
T PF10377_consen 41 RNFQVGDLVLFLPTRNHN 58 (129)
T ss_pred ecCCCCCEEEEEecCCCC
Confidence 589999999999997655
No 93
>TIGR01653 lactococcin_972 bacteriocin, lactococcin 972 family. This model represents bacteriocins related to lactococcin 972. Members tend to be found in association with a seven transmembrane putative immunity protein.
Probab=22.26 E-value=1.2e+02 Score=24.52 Aligned_cols=17 Identities=18% Similarity=0.446 Sum_probs=7.7
Q ss_pred CchhhHHHHHHHHHHHH
Q 020799 1 MARTIILAIAVTASMAS 17 (321)
Q Consensus 1 Ma~~~~~~~~~~~~~~~ 17 (321)
|-++...++++..+|+.
T Consensus 1 mkkk~~~~~~~~~il~~ 17 (92)
T TIGR01653 1 MKKKVVASLVSTTILAT 17 (92)
T ss_pred CchhhHHHHHHHHHHhh
Confidence 66666444333333333
No 94
>PLN02991 oxidoreductase
Probab=22.25 E-value=2.9e+02 Score=29.06 Aligned_cols=79 Identities=15% Similarity=0.221 Sum_probs=48.0
Q ss_pred CCeeEeCCEEEEEecCCC--------ccEEEeCcccccccC-CCCCCCccCCCCcEEEe-cccccEEEEecCccccccCc
Q 020799 52 MQTFSVGDILLFNFTTGQ--------QDVASVTKEAYENCN-PASPISRKTTGPAEFSL-EAAGDYYFICTLELHCTLGQ 121 (321)
Q Consensus 52 ~~~F~vGD~LvF~y~~~~--------hsV~~v~~~~Y~~C~-~~~~~~~~~~G~~~v~L-~~~G~~yFic~~~~HC~~Gm 121 (321)
..+++.||+|+.+..+.. |-+.|......|.=. ..-+|..-.+=..+|++ ++.|++||=+-...+-..|+
T Consensus 60 ~I~~~~GD~v~V~V~N~L~~~ttiHWHGi~q~~~~~~DGv~~tQcpI~PG~sftY~F~~~~q~GT~WYHsH~~~q~~~Gl 139 (543)
T PLN02991 60 DIISVTNDNLIINVFNHLDEPFLISWSGIRNWRNSYQDGVYGTTCPIPPGKNYTYALQVKDQIGSFYYFPSLGFHKAAGG 139 (543)
T ss_pred cEEEECCCEEEEEecCCCCCCccEEECCcccCCCccccCCCCCCCccCCCCcEEEEEEeCCCCcceEEecCcchhhhCCC
Confidence 357899999999886542 444443111122200 11133222222247787 47999999888776767788
Q ss_pred eeEEEecCC
Q 020799 122 KLAIHVTGP 130 (321)
Q Consensus 122 Kl~I~V~~~ 130 (321)
.-.|.|..+
T Consensus 140 ~G~lIV~~~ 148 (543)
T PLN02991 140 FGAIRISSR 148 (543)
T ss_pred eeeEEEeCC
Confidence 888888864
No 95
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=22.11 E-value=1.6e+02 Score=30.91 Aligned_cols=8 Identities=25% Similarity=0.405 Sum_probs=3.8
Q ss_pred cccccCce
Q 020799 115 LHCTLGQK 122 (321)
Q Consensus 115 ~HC~~GmK 122 (321)
.||...+|
T Consensus 138 r~~~~nrk 145 (569)
T KOG3671|consen 138 RICHRNRK 145 (569)
T ss_pred Hhhhhhhh
Confidence 45555443
No 96
>PRK09752 adhesin; Provisional
Probab=21.33 E-value=99 Score=35.58 Aligned_cols=17 Identities=35% Similarity=0.509 Sum_probs=7.5
Q ss_pred CCEEEEeec-CCCCcEEE
Q 020799 177 CDTLVFNFA-NGTQDVAI 193 (321)
Q Consensus 177 GD~LvF~y~-~~~h~V~~ 193 (321)
.|.|+.+=+ .+.|.|..
T Consensus 838 TDrLvI~G~tsG~T~V~V 855 (1250)
T PRK09752 838 SDQLVLNGNTAGNTTVVV 855 (1250)
T ss_pred CceEEEecCCCCcEEEEE
Confidence 355555443 23444443
No 97
>MTH00140 COX2 cytochrome c oxidase subunit II; Provisional
Probab=21.03 E-value=1.1e+02 Score=28.29 Aligned_cols=30 Identities=17% Similarity=0.406 Sum_probs=24.7
Q ss_pred EEEecccccEEEEecCccccccC---ceeEEEecC
Q 020799 98 EFSLEAAGDYYFICTLELHCTLG---QKLAIHVTG 129 (321)
Q Consensus 98 ~v~L~~~G~~yFic~~~~HC~~G---mKl~I~V~~ 129 (321)
.++.+++|.++..|+. -|..| |++.|.|..
T Consensus 183 ~~~~~~~g~y~~~C~e--~CG~~H~~M~~~v~v~~ 215 (228)
T MTH00140 183 SFEPKRPGVFYGQCSE--ICGANHSFMPIVVEAVP 215 (228)
T ss_pred EEEeCCCEEEEEECcc--ccCcCcCCCeEEEEEEC
Confidence 5667899999999996 68766 888888874
No 98
>PF10377 ATG11: Autophagy-related protein 11; InterPro: IPR019460 This family consists of proteins involved in telomere maintenance. In Schizosaccharomyces pombe (fission yeast) this protein is called Taf1 (taz1 interacting factor) and is part of the telomere cap complex. In Saccharomyces cerevisiae (baker's yeast) this protein is called ATG11 and is known to be involved in vacuolar targeting and peroxisome degradation [, ].
Probab=20.92 E-value=64 Score=27.37 Aligned_cols=18 Identities=39% Similarity=0.691 Sum_probs=15.5
Q ss_pred CeeEeCCEEEEEecCCCc
Q 020799 53 QTFSVGDILLFNFTTGQQ 70 (321)
Q Consensus 53 ~~F~vGD~LvF~y~~~~h 70 (321)
++|++||.+.|-++...|
T Consensus 41 ~~f~~GDlvLflpt~~~~ 58 (129)
T PF10377_consen 41 RNFQVGDLVLFLPTRNHN 58 (129)
T ss_pred ecCCCCCEEEEEecCCCC
Confidence 579999999999987655
No 99
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=20.73 E-value=3.5e+02 Score=28.90 Aligned_cols=41 Identities=24% Similarity=0.294 Sum_probs=32.5
Q ss_pred ccCCCe--EEEeecCeeEEEEcCCCCCCCCCCeEEEEEeCCCC
Q 020799 211 FTSSPV--KITLKFPGEYYFTSTYLSHCSLGQRLAINVTGTST 251 (321)
Q Consensus 211 ~~~G~~--~v~L~~~G~~yFic~~~~HC~~GmKl~I~V~~~~~ 251 (321)
...|-. +|..|.||.-+|=|-...|=..||.+.+.|.+...
T Consensus 496 p~~gW~aIRF~aDNPG~W~lHCH~~~h~~~Gm~~~~~v~~~~~ 538 (596)
T PLN00044 496 FPGAWTAILVFLDNAGIWNLRVENLDAWYLGQEVYINVVNPED 538 (596)
T ss_pred CCCCeEEEEEecCCCEEehhhccCchhhcccCcEEEEEecCCC
Confidence 344544 67889999999989888887789999999986653
No 100
>PTZ00047 cytochrome c oxidase subunit II; Provisional
Probab=20.14 E-value=1.5e+02 Score=26.44 Aligned_cols=30 Identities=10% Similarity=0.187 Sum_probs=0.0
Q ss_pred EEEeecCeeEEEEcCCCCCCCCC---CeEEEEEeC
Q 020799 217 KITLKFPGEYYFTSTYLSHCSLG---QRLAINVTG 248 (321)
Q Consensus 217 ~v~L~~~G~~yFic~~~~HC~~G---mKl~I~V~~ 248 (321)
.++.+++|.||..|.. .|..| |.+.|.|..
T Consensus 116 ~~~~~~~G~y~gqCsE--lCG~gHs~M~~~V~vvs 148 (162)
T PTZ00047 116 NTFILREGVFYGQCSE--MCGTLHGFMPIVVEAVS 148 (162)
T ss_pred EEecCCCeEEEEEcch--hcCcCccCceEEEEEeC
Done!