Query 020800
Match_columns 321
No_of_seqs 241 out of 1000
Neff 3.4
Searched_HMMs 46136
Date Fri Mar 29 05:15:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020800.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020800hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1603 Copper chaperone [Inor 99.5 4.4E-14 9.6E-19 108.0 8.6 68 58-125 2-70 (73)
2 PF00403 HMA: Heavy-metal-asso 99.3 2.6E-11 5.7E-16 87.8 7.7 56 64-120 1-61 (62)
3 COG2608 CopZ Copper chaperone 99.0 1E-09 2.2E-14 84.0 7.9 64 60-124 1-69 (71)
4 KOG4656 Copper chaperone for s 98.9 4E-09 8.7E-14 98.0 8.0 65 60-125 6-71 (247)
5 PLN02957 copper, zinc superoxi 98.0 4.3E-05 9.3E-10 70.4 10.0 67 60-127 5-72 (238)
6 PRK10671 copA copper exporting 98.0 2.1E-05 4.7E-10 83.1 8.4 65 60-127 2-68 (834)
7 PRK10671 copA copper exporting 96.9 0.0069 1.5E-07 64.5 11.2 114 2-123 47-162 (834)
8 TIGR00003 copper ion binding p 96.8 0.014 3.1E-07 37.5 8.3 58 62-120 3-65 (68)
9 COG2217 ZntA Cation transport 96.6 0.0049 1.1E-07 65.7 7.4 61 61-123 2-68 (713)
10 KOG0207 Cation transport ATPas 94.3 0.075 1.6E-06 58.5 5.8 65 68-133 2-69 (951)
11 KOG0207 Cation transport ATPas 94.0 0.13 2.8E-06 56.8 7.0 62 61-123 146-212 (951)
12 PRK11033 zntA zinc/cadmium/mer 92.4 0.4 8.7E-06 51.1 7.6 61 61-122 53-116 (741)
13 TIGR02052 MerP mercuric transp 73.0 31 0.00068 24.6 9.0 60 62-122 24-88 (92)
14 PRK13748 putative mercuric red 66.8 27 0.0006 35.2 8.2 61 64-125 3-67 (561)
15 COG1888 Uncharacterized protei 66.4 28 0.0006 29.5 6.8 73 59-134 4-86 (97)
16 PF09510 Rtt102p: Rtt102p-like 53.3 9.3 0.0002 33.4 2.0 31 271-301 1-31 (130)
17 PF01883 DUF59: Domain of unkn 51.9 24 0.00052 26.3 3.8 32 61-92 34-72 (72)
18 cd00371 HMA Heavy-metal-associ 50.2 45 0.00097 18.7 7.2 47 68-114 6-55 (63)
19 KOG1603 Copper chaperone [Inor 43.0 23 0.00051 27.0 2.5 21 2-22 50-70 (73)
20 PF02680 DUF211: Uncharacteriz 39.7 93 0.002 26.3 5.8 70 60-132 4-82 (95)
21 PF08821 CGGC: CGGC domain; I 35.7 79 0.0017 26.6 4.8 50 69-122 44-102 (107)
22 PF04468 PSP1: PSP1 C-terminal 32.5 1.6E+02 0.0036 23.5 6.0 53 71-124 28-85 (88)
23 PF14437 MafB19-deam: MafB19-l 27.8 1.3E+02 0.0028 27.1 5.1 41 61-101 100-142 (146)
24 TIGR03406 FeS_long_SufT probab 21.7 1.1E+02 0.0025 27.7 3.6 33 62-94 114-153 (174)
25 PRK06418 transcription elongat 21.0 4.4E+02 0.0096 24.1 7.2 66 60-125 5-96 (166)
26 PF15643 Tox-PL-2: Papain fold 20.1 89 0.0019 26.7 2.4 21 68-88 18-38 (100)
No 1
>KOG1603 consensus Copper chaperone [Inorganic ion transport and metabolism]
Probab=99.53 E-value=4.4e-14 Score=108.05 Aligned_cols=68 Identities=29% Similarity=0.571 Sum_probs=61.8
Q ss_pred CCceEEEEEEeccchhHHHHHHHH-hhcCCceEEEEEcCCCEEEEEeeCCHHHHHHHHHHHhCCcEEEE
Q 020800 58 TEEGTYVMKIKLCCDSCNQKLRKI-MKIKGLETVNMDVQEDLVKVKGTVDITEVRSYIKDELKKDVVII 125 (321)
Q Consensus 58 P~v~TVVLKVgMHCeGCakKIkKa-lKIkGVesVeVDLkk~kVTVkGtvDp~kLVeaL~KKtGK~AeII 125 (321)
+...+++++|+|||+||+.+|++. ..++||+++.+|+++++|||.|.+||..|+..|+++.++++.++
T Consensus 2 ~~~~~~v~kv~~~C~gc~~kV~~~l~~~~GV~~v~id~~~~kvtV~g~~~p~~vl~~l~k~~~k~~~~~ 70 (73)
T KOG1603|consen 2 PPIKTVVLKVNMHCEGCARKVKRVLQKLKGVESVDIDIKKQKVTVKGNVDPVKLLKKLKKTGGKRAELW 70 (73)
T ss_pred CCccEEEEEECcccccHHHHHHHHhhccCCeEEEEecCCCCEEEEEEecCHHHHHHHHHhcCCCceEEe
Confidence 456789999999999999999999 88999999999999999999999999999999998555777554
No 2
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=99.25 E-value=2.6e-11 Score=87.84 Aligned_cols=56 Identities=25% Similarity=0.501 Sum_probs=51.1
Q ss_pred EEEE-eccchhHHHHHHHH-hhcCCceEEEEEcCCCEEEEEeeCC---HHHHHHHHHHHhCC
Q 020800 64 VMKI-KLCCDSCNQKLRKI-MKIKGLETVNMDVQEDLVKVKGTVD---ITEVRSYIKDELKK 120 (321)
Q Consensus 64 VLKV-gMHCeGCakKIkKa-lKIkGVesVeVDLkk~kVTVkGtvD---p~kLVeaL~KKtGK 120 (321)
+|+| +|+|++|+.+|+++ .+++||.++.+|+.+++|+|.+..+ +.+|.++|+ ++|+
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~~~v~v~~~~~~~~~~~i~~~i~-~~Gy 61 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLETKTVTVTYDPDKTSIEKIIEAIE-KAGY 61 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEESTTTSCHHHHHHHHH-HTTS
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCCCEEEEEEecCCCCHHHHHHHHH-HhCc
Confidence 5889 99999999999999 8999999999999999999998755 499999997 4776
No 3
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=99.03 E-value=1e-09 Score=83.97 Aligned_cols=64 Identities=20% Similarity=0.398 Sum_probs=55.0
Q ss_pred ceEEEEEE-eccchhHHHHHHHH-hhcCCceEEEEEcCCCEEEE--Ee-eCCHHHHHHHHHHHhCCcEEE
Q 020800 60 EGTYVMKI-KLCCDSCNQKLRKI-MKIKGLETVNMDVQEDLVKV--KG-TVDITEVRSYIKDELKKDVVI 124 (321)
Q Consensus 60 v~TVVLKV-gMHCeGCakKIkKa-lKIkGVesVeVDLkk~kVTV--kG-tvDp~kLVeaL~KKtGK~AeI 124 (321)
++++.|+| +|||++|+.+|.++ .+++||.+|++|++.+.++| .+ .++...|.++|. .+|+.+..
T Consensus 1 ~~~~~l~v~~MtC~~C~~~V~~al~~v~gv~~v~v~l~~~~~~V~~d~~~~~~~~i~~ai~-~aGy~~~~ 69 (71)
T COG2608 1 MMKTTLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLEKGTATVTFDSNKVDIEAIIEAIE-DAGYKVEE 69 (71)
T ss_pred CceEEEEECCcCcHHHHHHHHHHHhcCCCeeEEEEEcccCeEEEEEcCCcCCHHHHHHHHH-HcCCCeee
Confidence 35678999 99999999999999 88999999999999955555 56 689999999987 58988843
No 4
>KOG4656 consensus Copper chaperone for superoxide dismutase [Inorganic ion transport and metabolism]
Probab=98.90 E-value=4e-09 Score=97.97 Aligned_cols=65 Identities=18% Similarity=0.469 Sum_probs=60.2
Q ss_pred ceEEEEEEeccchhHHHHHHHH-hhcCCceEEEEEcCCCEEEEEeeCCHHHHHHHHHHHhCCcEEEE
Q 020800 60 EGTYVMKIKLCCDSCNQKLRKI-MKIKGLETVNMDVQEDLVKVKGTVDITEVRSYIKDELKKDVVII 125 (321)
Q Consensus 60 v~TVVLKVgMHCeGCakKIkKa-lKIkGVesVeVDLkk~kVTVkGtvDp~kLVeaL~KKtGK~AeII 125 (321)
..+++|.|.|||++|+..|+.. ..++||++|++|++.+.|.|.+++.++.|...|+ -|||+|.|.
T Consensus 6 ~~~~efaV~M~cescvnavk~~L~~V~Gi~~vevdle~q~v~v~ts~p~s~i~~~le-~tGr~Avl~ 71 (247)
T KOG4656|consen 6 TYEAEFAVQMTCESCVNAVKACLKGVPGINSVEVDLEQQIVSVETSVPPSEIQNTLE-NTGRDAVLR 71 (247)
T ss_pred ceeEEEEEechhHHHHHHHHHHhccCCCcceEEEEhhhcEEEEEccCChHHHHHHHH-hhChheEEe
Confidence 4568999999999999999999 5699999999999999999999999999999997 699999765
No 5
>PLN02957 copper, zinc superoxide dismutase
Probab=98.00 E-value=4.3e-05 Score=70.44 Aligned_cols=67 Identities=15% Similarity=0.380 Sum_probs=59.1
Q ss_pred ceEEEEEEeccchhHHHHHHHH-hhcCCceEEEEEcCCCEEEEEeeCCHHHHHHHHHHHhCCcEEEEcc
Q 020800 60 EGTYVMKIKLCCDSCNQKLRKI-MKIKGLETVNMDVQEDLVKVKGTVDITEVRSYIKDELKKDVVIIFP 127 (321)
Q Consensus 60 v~TVVLKVgMHCeGCakKIkKa-lKIkGVesVeVDLkk~kVTVkGtvDp~kLVeaL~KKtGK~AeIIS~ 127 (321)
...+.|.|+|+|+.|+..|+++ .+++||.++.+++..++++|.+.+++..|+..|. .+|+.+.++..
T Consensus 5 ~~~~~~~VgMsC~~Ca~~Iek~L~~~~GV~~v~vn~~~~~v~V~~~~~~~~I~~aIe-~~Gy~a~~~~~ 72 (238)
T PLN02957 5 ELLTEFMVDMKCEGCVAAVKNKLETLEGVKAVEVDLSNQVVRVLGSSPVKAMTAALE-QTGRKARLIGQ 72 (238)
T ss_pred cEEEEEEECccCHHHHHHHHHHHhcCCCeEEEEEEcCCCEEEEEecCCHHHHHHHHH-HcCCcEEEecC
Confidence 3456788899999999999999 8899999999999999999998888999989886 69999876644
No 6
>PRK10671 copA copper exporting ATPase; Provisional
Probab=97.96 E-value=2.1e-05 Score=83.06 Aligned_cols=65 Identities=18% Similarity=0.361 Sum_probs=57.1
Q ss_pred ceEEEEEE-eccchhHHHHHHHH-hhcCCceEEEEEcCCCEEEEEeeCCHHHHHHHHHHHhCCcEEEEcc
Q 020800 60 EGTYVMKI-KLCCDSCNQKLRKI-MKIKGLETVNMDVQEDLVKVKGTVDITEVRSYIKDELKKDVVIIFP 127 (321)
Q Consensus 60 v~TVVLKV-gMHCeGCakKIkKa-lKIkGVesVeVDLkk~kVTVkGtvDp~kLVeaL~KKtGK~AeIIS~ 127 (321)
..+++|.| +|||++|+.+|+++ .+++||..|.+++. +++|.+..++..|.+.|. .+|+.+.++++
T Consensus 2 ~~~~~l~V~gmtC~~C~~~i~~al~~~~gv~~v~v~~~--~~~v~~~~~~~~i~~~i~-~~Gy~~~~~~~ 68 (834)
T PRK10671 2 SQTIDLTLDGLSCGHCVKRVKESLEQRPDVEQADVSIT--EAHVTGTASAEALIETIK-QAGYDASVSHP 68 (834)
T ss_pred CeEEEEEECCcccHHHHHHHHHHHhcCCCcceEEEeee--EEEEEecCCHHHHHHHHH-hcCCccccccc
Confidence 35789999 99999999999999 88999999999994 667777889999999987 69999987653
No 7
>PRK10671 copA copper exporting ATPase; Provisional
Probab=96.92 E-value=0.0069 Score=64.49 Aligned_cols=114 Identities=8% Similarity=0.154 Sum_probs=76.2
Q ss_pred CChHHHHHHHHHHhCCceEEecCCCccccccccchhhHHHHHhhhhcCCCCCCCCCCCceEEEEEE-eccchhHHHHHHH
Q 020800 2 VDPWKIQELVEKETKKKVELIFPLTQMAAKRVDNQISEEKLKRKKKIHRNDIGSKQTEEGTYVMKI-KLCCDSCNQKLRK 80 (321)
Q Consensus 2 ~DP~Kl~erlekKTkKKVELISP~Pk~~~~~~e~~~ee~kK~e~~k~e~~k~e~KkP~v~TVVLKV-gMHCeGCakKIkK 80 (321)
+++..|++.|+ ..+-.|++++|.+.+........+. .... +.. ....+.....++.|.| +|||.+|+..|++
T Consensus 47 ~~~~~i~~~i~-~~Gy~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~--~~~~~~~~~~~~~l~V~Gm~Ca~Ca~~Ie~ 119 (834)
T PRK10671 47 ASAEALIETIK-QAGYDASVSHPKAKPLTESSIPSEA-LTAA---SEE--LPAATADDDDSQQLLLSGMSCASCVSRVQN 119 (834)
T ss_pred CCHHHHHHHHH-hcCCcccccccccccccccccCchh-hhhh---hhh--ccccccCcCceEEEEeCCcCcHHHHHHHHH
Confidence 46778888887 7899999988644433221110000 0000 000 0000011123567888 9999999999999
Q ss_pred H-hhcCCceEEEEEcCCCEEEEEeeCCHHHHHHHHHHHhCCcEE
Q 020800 81 I-MKIKGLETVNMDVQEDLVKVKGTVDITEVRSYIKDELKKDVV 123 (321)
Q Consensus 81 a-lKIkGVesVeVDLkk~kVTVkGtvDp~kLVeaL~KKtGK~Ae 123 (321)
. ..++||.++.+++..+++.|.+..++..+...+. .+|..+.
T Consensus 120 ~L~~~~GV~~a~vnl~t~~~~V~~~~s~~~I~~~I~-~~Gy~a~ 162 (834)
T PRK10671 120 ALQSVPGVTQARVNLAERTALVMGSASPQDLVQAVE-KAGYGAE 162 (834)
T ss_pred HHhcCCCceeeeeecCCCeEEEEccCCHHHHHHHHH-hcCCCcc
Confidence 9 8899999999999999999987778888877775 5887663
No 8
>TIGR00003 copper ion binding protein. This model describes an apparently copper-specific subfamily of the metal-binding domain HMA (Pfam family pfam00403). Closely related sequences outside this model include mercury resistance proteins and repeated domains of eukaryotic eukaryotic copper transport proteins. Members of this family are strictly prokaryotic. The model identifies both small proteins consisting of just this domain and N-terminal regions of cation (probably copper) transporting ATPases.
Probab=96.85 E-value=0.014 Score=37.48 Aligned_cols=58 Identities=17% Similarity=0.382 Sum_probs=46.2
Q ss_pred EEEEEE-eccchhHHHHHHHH-hhcCCceEEEEEcCCCEEEEEe---eCCHHHHHHHHHHHhCC
Q 020800 62 TYVMKI-KLCCDSCNQKLRKI-MKIKGLETVNMDVQEDLVKVKG---TVDITEVRSYIKDELKK 120 (321)
Q Consensus 62 TVVLKV-gMHCeGCakKIkKa-lKIkGVesVeVDLkk~kVTVkG---tvDp~kLVeaL~KKtGK 120 (321)
++.+.| +|+|..|+..|.+. ..+.+|..+.+++....+.|.- ..+...+...+. ..|.
T Consensus 3 ~~~~~v~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~ 65 (68)
T TIGR00003 3 KFTVQVMSMTCQHCVDKIEKFVGELEGVSKVQVKLEKASVKVEFDAPQATEICIAEAIL-DAGY 65 (68)
T ss_pred EEEEEECCeEcHHHHHHHHHHHhcCCCEEEEEEEcCCCEEEEEeCCCCCCHHHHHHHHH-HcCC
Confidence 467889 99999999999998 8899999999999999988863 346666666553 3443
No 9
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=96.62 E-value=0.0049 Score=65.71 Aligned_cols=61 Identities=13% Similarity=0.327 Sum_probs=52.4
Q ss_pred eEEEEEE-eccchhHHHHHHHH-hhcCCceEEEEEcCCCEEEEEe---eCC-HHHHHHHHHHHhCCcEE
Q 020800 61 GTYVMKI-KLCCDSCNQKLRKI-MKIKGLETVNMDVQEDLVKVKG---TVD-ITEVRSYIKDELKKDVV 123 (321)
Q Consensus 61 ~TVVLKV-gMHCeGCakKIkKa-lKIkGVesVeVDLkk~kVTVkG---tvD-p~kLVeaL~KKtGK~Ae 123 (321)
.++.|.| +|||..|+.+|+ + .+++||..+.+++.+.+++|.. ..+ ++.+...++ .+|+.+.
T Consensus 2 ~~~~l~v~Gm~Ca~C~~~ie-~l~~~~gV~~~~vn~~t~~~~v~~~~~~~~~~~~~~~~v~-~~gy~~~ 68 (713)
T COG2217 2 RETSLSVEGMTCAACASRIE-ALNKLPGVEEARVNLATERATVVYDPEEVDLPADIVAAVE-KAGYSAR 68 (713)
T ss_pred ceeEEeecCcCcHHHHHHHH-HHhcCCCeeEEEeecccceEEEEecccccccHHHHHHHHH-hcCcccc
Confidence 3578999 999999999999 9 8899999999999999999974 345 678888886 6888773
No 10
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=94.27 E-value=0.075 Score=58.46 Aligned_cols=65 Identities=12% Similarity=0.396 Sum_probs=56.6
Q ss_pred eccchhHHHHHHHH-hhcCCceEEEEEcCCCEEEEE--eeCCHHHHHHHHHHHhCCcEEEEcccccCCC
Q 020800 68 KLCCDSCNQKLRKI-MKIKGLETVNMDVQEDLVKVK--GTVDITEVRSYIKDELKKDVVIIFPAEVVIP 133 (321)
Q Consensus 68 gMHCeGCakKIkKa-lKIkGVesVeVDLkk~kVTVk--GtvDp~kLVeaL~KKtGK~AeIIS~~EiVpP 133 (321)
+|+|..|.+.|..+ ...+||.+++|++.++..+|. -.++++.|.+.|. -.|..+.+++.++.-..
T Consensus 2 gmtc~ac~~si~~~~~~~~g~~~i~vsl~~~~~~v~~~~~~~~~~i~~~ie-d~gf~~~~~~~~~~~~~ 69 (951)
T KOG0207|consen 2 GMTCSACSNSIEKAISRKPGVQKIEVSLAQKRANVSYDNIVSPESIKETIE-DMGFEASLLSDSEITAS 69 (951)
T ss_pred CccHHHHhhhHHHHHhcCCCceeEEEEeccccceEEEeeccCHHHHHHHhh-cccceeeecccCccccc
Confidence 79999999999999 889999999999999888885 4589999999986 58999999887765444
No 11
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=94.04 E-value=0.13 Score=56.75 Aligned_cols=62 Identities=16% Similarity=0.336 Sum_probs=53.6
Q ss_pred eEEEEEE-eccchhHHHHHHHH-hhcCCceEEEEEcCCCEEEEEe---eCCHHHHHHHHHHHhCCcEE
Q 020800 61 GTYVMKI-KLCCDSCNQKLRKI-MKIKGLETVNMDVQEDLVKVKG---TVDITEVRSYIKDELKKDVV 123 (321)
Q Consensus 61 ~TVVLKV-gMHCeGCakKIkKa-lKIkGVesVeVDLkk~kVTVkG---tvDp~kLVeaL~KKtGK~Ae 123 (321)
.+++|.| +|.|.+|+..|.+. .+++||.++.+++..+++.|.= ...|-.++..|. .++..+.
T Consensus 146 ~~i~L~v~g~~c~s~~~~ie~~l~~l~gV~~~sv~~~t~~~~V~~~~~~~~pr~i~k~ie-~~~~~~~ 212 (951)
T KOG0207|consen 146 QKIYLDVLGMTCASCVSKIESILERLRGVKSFSVSLATDTAIVVYDPEITGPRDIIKAIE-ETGFEAS 212 (951)
T ss_pred CcEEEEeecccccchhhhhHHHHhhccCeeEEEEeccCCceEEEecccccChHHHHHHHH-hhcccce
Confidence 5789999 99999999999999 8999999999999999999962 356778888886 4776663
No 12
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=92.41 E-value=0.4 Score=51.11 Aligned_cols=61 Identities=20% Similarity=0.369 Sum_probs=46.4
Q ss_pred eEEEEEE-eccchhHHHHHHHH-hhcCCceEEEEEcCCCEEEEEeeCC-HHHHHHHHHHHhCCcE
Q 020800 61 GTYVMKI-KLCCDSCNQKLRKI-MKIKGLETVNMDVQEDLVKVKGTVD-ITEVRSYIKDELKKDV 122 (321)
Q Consensus 61 ~TVVLKV-gMHCeGCakKIkKa-lKIkGVesVeVDLkk~kVTVkGtvD-p~kLVeaL~KKtGK~A 122 (321)
.++.|.| +|||.+|+..|.+. ..++||.++.+++...++.|....+ ...+...+. .+|..+
T Consensus 53 ~r~~l~V~Gm~C~sCa~~Ie~aL~~~~GV~~v~Vn~at~k~~V~~d~~~~~~I~~aI~-~~Gy~a 116 (741)
T PRK11033 53 TRYSWKVSGMDCPSCARKVENAVRQLAGVNQVQVLFATEKLVVDADNDIRAQVESAVQ-KAGFSL 116 (741)
T ss_pred ceEEEEECCCCcHHHHHHHHHHHhcCCCeeeEEEEcCCCeEEEEecccchHHHHHHHH-hccccc
Confidence 3567888 99999999999999 8899999999999999988853211 145555554 467655
No 13
>TIGR02052 MerP mercuric transport protein periplasmic component. This model represents the periplasmic mercury (II) binding protein of the bacterial mercury detoxification system which passes mercuric ion to the MerT transporter for subsequent reduction to Hg(0) by the mercuric reductase MerA. MerP contains a distinctive GMTCXXC motif associated with metal binding. MerP is related to a larger family of metal binding proteins (pfam00403).
Probab=73.02 E-value=31 Score=24.63 Aligned_cols=60 Identities=12% Similarity=0.283 Sum_probs=41.5
Q ss_pred EEEEEE-eccchhHHHHHHHH-hhcCCceEEEEEcCCCEEEEEe---eCCHHHHHHHHHHHhCCcE
Q 020800 62 TYVMKI-KLCCDSCNQKLRKI-MKIKGLETVNMDVQEDLVKVKG---TVDITEVRSYIKDELKKDV 122 (321)
Q Consensus 62 TVVLKV-gMHCeGCakKIkKa-lKIkGVesVeVDLkk~kVTVkG---tvDp~kLVeaL~KKtGK~A 122 (321)
++.+.+ +|+|..|...+... ....||....+......+.+.- ..+...+...+. ..+..+
T Consensus 24 ~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~ 88 (92)
T TIGR02052 24 TVTLEVPGMTCVACPITVETALQKVDGVSKAEVTFKTKLAVVTFDDEKTNVKALTEATT-DAGYPS 88 (92)
T ss_pred EEEEEECCeEcHHHHHHHHHHHhcCCCEEEEEEEecCCEEEEEECCCCCCHHHHHHHHH-hcCCCe
Confidence 345667 89999999999988 7788988888888777766641 235555544443 355444
No 14
>PRK13748 putative mercuric reductase; Provisional
Probab=66.76 E-value=27 Score=35.21 Aligned_cols=61 Identities=15% Similarity=0.347 Sum_probs=44.7
Q ss_pred EEEE-eccchhHHHHHHHH-hhcCCceEEEEEcCCCEEEEEe--eCCHHHHHHHHHHHhCCcEEEE
Q 020800 64 VMKI-KLCCDSCNQKLRKI-MKIKGLETVNMDVQEDLVKVKG--TVDITEVRSYIKDELKKDVVII 125 (321)
Q Consensus 64 VLKV-gMHCeGCakKIkKa-lKIkGVesVeVDLkk~kVTVkG--tvDp~kLVeaL~KKtGK~AeII 125 (321)
.+.+ +|+|..|...+... ..++|+....+++....+.+.. ..+...+...+. ..+..+.+.
T Consensus 3 ~i~i~g~~C~~c~~~ie~~l~~~~gv~~a~~~~~~~~~~v~~~~~~~~~~i~~~i~-~~g~~~~~~ 67 (561)
T PRK13748 3 TLKITGMTCDSCAAHVKDALEKVPGVQSADVSYPKGSAQLAIEVGTSPDALTAAVA-GLGYRATLA 67 (561)
T ss_pred EEEECCeecHHHHHHHHHHHhcCCCeeEEEEEcCCCEEEEEECCCCCHHHHHHHHH-HcCCeeecc
Confidence 3556 89999999999998 7889999999999888877763 245566655553 456555433
No 15
>COG1888 Uncharacterized protein conserved in archaea [Function unknown]
Probab=66.41 E-value=28 Score=29.52 Aligned_cols=73 Identities=25% Similarity=0.300 Sum_probs=46.9
Q ss_pred CceEEEEEE-eccchhHHHHHHHH-hhcCCceEEE-------EEcCCCEEEEEee-CCHHHHHHHHHHHhCCcEEEEccc
Q 020800 59 EEGTYVMKI-KLCCDSCNQKLRKI-MKIKGLETVN-------MDVQEDLVKVKGT-VDITEVRSYIKDELKKDVVIIFPA 128 (321)
Q Consensus 59 ~v~TVVLKV-gMHCeGCakKIkKa-lKIkGVesVe-------VDLkk~kVTVkGt-vDp~kLVeaL~KKtGK~AeIIS~~ 128 (321)
.++-++|-| --|-+--.-.+-+. ++++||+.|. ++..+=++||.|+ +|-..|.+.|++ +|. .|-|..
T Consensus 4 ~iRRlVLDvlKP~~~p~ive~A~~lskl~gVegVNItv~eiD~et~~~~itIeG~~ldydei~~~iE~-~Gg--~IHSiD 80 (97)
T COG1888 4 GIRRLVLDVLKPHRGPTIVELALELSKLEGVEGVNITVTEIDVETENLKITIEGTNLDYDEIEEVIEE-LGG--AIHSID 80 (97)
T ss_pred cceeeeeeecCCcCCCcHHHHHHHHhhcCCcceEEEEEEEeeehhcceEEEEEcCCCCHHHHHHHHHH-cCC--eeeehh
Confidence 355677777 33323333334444 7788877553 3335557888886 999999999974 774 467887
Q ss_pred ccCCCC
Q 020800 129 EVVIPT 134 (321)
Q Consensus 129 EiVpP~ 134 (321)
|+|.-+
T Consensus 81 evvaGk 86 (97)
T COG1888 81 EVVAGK 86 (97)
T ss_pred hhhhcc
Confidence 777643
No 16
>PF09510 Rtt102p: Rtt102p-like transcription regulator protein; InterPro: IPR018304 Rtt102p (Regulator of Ty1 Transposition Protein 102) is a transcription regulator protein found in fungi that appears to be integrally associated with both the Swi-Snf and the RSC chromatin remodelling complexes, []. RSC is involved in transcription regulation and nucleosome positioning, and is responsible for the transfer of a histone octamer from a nucleosome core particle to naked DNA. The reaction requires ATP and involves an activated RSC-nucleosome intermediate. Remodelling reaction also involves DNA translocation, DNA twist and conformational change. As a reconfigurer of centromeric and flanking nucleosomes, RSC complex is required both for proper kinetochore function in chromosome segregation and, via a PKC1-dependent signalling pathway, for organisation of the cellular cytoskeleton. It is a probable component of the SWI/SNF complex, an ATP-dependent chromatin-remodelling complex, is required for the positive and negative regulation of gene expression of a large number of genes. It changes chromatin structure by altering DNA-histone contacts within a nucleosome, leading eventually to a change in nucleosome position, thus facilitating or repressing binding of gene-specific transcription factors.
Probab=53.26 E-value=9.3 Score=33.43 Aligned_cols=31 Identities=32% Similarity=0.592 Sum_probs=27.0
Q ss_pred CccccCCCceecccCCccccccccccCcccc
Q 020800 271 SVMRNENPKTYLNYDGRKVNNEYDYYSPLKY 301 (321)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (321)
|+|+.-|--.|++-...++.=+||+|+|.+-
T Consensus 1 sli~~AN~~~y~~~~~~~~~W~yDWytP~k~ 31 (130)
T PF09510_consen 1 SLIERANKSGYGNSADKKIHWKYDWYTPSKS 31 (130)
T ss_pred ChhHhccccccccCCCCceeeEEeccccccc
Confidence 5788888888998888889999999999983
No 17
>PF01883 DUF59: Domain of unknown function DUF59; InterPro: IPR002744 This family includes prokaryotic proteins of unknown function. The family also includes PhaH (O84984 from SWISSPROT) from Pseudomonas putida. PhaH forms a complex with PhaF (O84982 from SWISSPROT), PhaG (O84983 from SWISSPROT) and PhaI (O84985 from SWISSPROT), which hydroxylates phenylacetic acid to 2-hydroxyphenylacetic acid []. So members of this family may all be components of ring hydroxylating complexes.; PDB: 3LNO_C 3CQ3_A 3CQ2_D 2CU6_B 3CQ1_A 3UX3_B 3UX2_A 1WCJ_A 1UWD_A.
Probab=51.89 E-value=24 Score=26.32 Aligned_cols=32 Identities=19% Similarity=0.519 Sum_probs=19.7
Q ss_pred eEEEEEEeccchhHH------HHHHHH-hhcCCceEEEE
Q 020800 61 GTYVMKIKLCCDSCN------QKLRKI-MKIKGLETVNM 92 (321)
Q Consensus 61 ~TVVLKVgMHCeGCa------kKIkKa-lKIkGVesVeV 92 (321)
.+|.|.+.+.+.+|. ..|+.+ ..++||.+|.|
T Consensus 34 ~~V~v~l~l~~~~~~~~~~l~~~i~~~l~~l~gv~~V~V 72 (72)
T PF01883_consen 34 GKVSVSLELPTPACPAAEPLREEIREALKALPGVKSVKV 72 (72)
T ss_dssp CEEEEEE--SSTTHTTHHHHHHHHHHHHHTSTT-SEEEE
T ss_pred CEEEEEEEECCCCchHHHHHHHHHHHHHHhCCCCceEeC
Confidence 456666666665554 556666 66899999876
No 18
>cd00371 HMA Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain contains two cysteine residues that are important in binding and transfer of metal ions, such as copper, cadmium, cobalt and zinc. In the case of copper, stoichiometry of binding is one Cu+ ion per binding domain. Repeats of the HMA domain in copper chaperone has been associated with Menkes/Wilson disease due to binding of multiple copper ions.
Probab=50.16 E-value=45 Score=18.66 Aligned_cols=47 Identities=28% Similarity=0.478 Sum_probs=32.8
Q ss_pred eccchhHHHHHHHH-hhcCCceEEEEEcCCCEEEEEee--CCHHHHHHHH
Q 020800 68 KLCCDSCNQKLRKI-MKIKGLETVNMDVQEDLVKVKGT--VDITEVRSYI 114 (321)
Q Consensus 68 gMHCeGCakKIkKa-lKIkGVesVeVDLkk~kVTVkGt--vDp~kLVeaL 114 (321)
+|+|..|...+... ..+.|+....+.+....+.+... .+...+...+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 (63)
T cd00371 6 GMTCAGCVSKIEKALEKLPGVESVEVDLETGKATVEYDPEVSPEELLEAI 55 (63)
T ss_pred CeEcHHHHHHHHHHHhcCCCEeEEEEEccCCEEEEEECCCCCHHHHHHHH
Confidence 78899999999877 67788887777777666666532 2444443333
No 19
>KOG1603 consensus Copper chaperone [Inorganic ion transport and metabolism]
Probab=42.96 E-value=23 Score=27.01 Aligned_cols=21 Identities=38% Similarity=0.514 Sum_probs=18.1
Q ss_pred CChHHHHHHHHHHhCCceEEe
Q 020800 2 VDPWKIQELVEKETKKKVELI 22 (321)
Q Consensus 2 ~DP~Kl~erlekKTkKKVELI 22 (321)
+||.+|+++|+++++++++++
T Consensus 50 ~~p~~vl~~l~k~~~k~~~~~ 70 (73)
T KOG1603|consen 50 VDPVKLLKKLKKTGGKRAELW 70 (73)
T ss_pred cCHHHHHHHHHhcCCCceEEe
Confidence 699999999999887777765
No 20
>PF02680 DUF211: Uncharacterized ArCR, COG1888; InterPro: IPR003831 This entry describes proteins of unknown function.; PDB: 3BPD_I 2RAQ_F 2X3D_E.
Probab=39.66 E-value=93 Score=26.32 Aligned_cols=70 Identities=27% Similarity=0.410 Sum_probs=43.6
Q ss_pred ceEEEEEE-eccchhHHHHHHHHhhcCCceEEEE-----EcCCC--EEEEEee-CCHHHHHHHHHHHhCCcEEEEccccc
Q 020800 60 EGTYVMKI-KLCCDSCNQKLRKIMKIKGLETVNM-----DVQED--LVKVKGT-VDITEVRSYIKDELKKDVVIIFPAEV 130 (321)
Q Consensus 60 v~TVVLKV-gMHCeGCakKIkKalKIkGVesVeV-----DLkk~--kVTVkGt-vDp~kLVeaL~KKtGK~AeIIS~~Ei 130 (321)
++.++|-| --|-..-..=.+..++++||..|.+ |.+.. ++||.|. +|-+.|.++|+ .+| +.|=|..|+
T Consensus 4 irRlVLDVlKP~~p~i~e~A~~l~~~~gV~gVnitv~EvD~ete~lkitiEG~~id~d~i~~~Ie-~~G--g~IHSIDeV 80 (95)
T PF02680_consen 4 IRRLVLDVLKPHEPSIVELAKALSELEGVDGVNITVVEVDVETENLKITIEGDDIDFDEIKEAIE-ELG--GVIHSIDEV 80 (95)
T ss_dssp EEEEEEEEEEESSS-HHHHHHHHHTSTTEEEEEEEEEEE-SSEEEEEEEEEESSE-HHHHHHHHH-HTT---EEEEEEEE
T ss_pred eeEEEEEeecCCCCCHHHHHHHHHhCCCcceEEEEEEEeeccccEEEEEEEeCCCCHHHHHHHHH-HcC--CeEEeeeee
Confidence 55677777 2255544443333378899886653 43333 5666787 99999999997 577 667777766
Q ss_pred CC
Q 020800 131 VI 132 (321)
Q Consensus 131 Vp 132 (321)
+.
T Consensus 81 va 82 (95)
T PF02680_consen 81 VA 82 (95)
T ss_dssp EE
T ss_pred ee
Confidence 54
No 21
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=35.69 E-value=79 Score=26.59 Aligned_cols=50 Identities=26% Similarity=0.596 Sum_probs=31.1
Q ss_pred ccchhHHH--HHHHH--hhcCCceEEEEEcCCCEEEEEee-----CCHHHHHHHHHHHhCCcE
Q 020800 69 LCCDSCNQ--KLRKI--MKIKGLETVNMDVQEDLVKVKGT-----VDITEVRSYIKDELKKDV 122 (321)
Q Consensus 69 MHCeGCak--KIkKa--lKIkGVesVeVDLkk~kVTVkGt-----vDp~kLVeaL~KKtGK~A 122 (321)
++|+||-. -+.++ ++-.||+.|-+. +- ++.+. -..+.|.+.|++++|..|
T Consensus 44 ~~CgGCpg~~~~~~~~~l~~~~~d~IHls--sC--~~~~~~~~~CP~~~~~~~~I~~~~gi~V 102 (107)
T PF08821_consen 44 FTCGGCPGRKLVRRIKKLKKNGADVIHLS--SC--MVKGNPHGPCPHIDEIKKIIEEKFGIEV 102 (107)
T ss_pred eeCCCCChhHHHHHHHHHHHCCCCEEEEc--CC--EecCCCCCCCCCHHHHHHHHHHHhCCCE
Confidence 49999863 22333 345788854443 33 33322 457899999999888655
No 22
>PF04468 PSP1: PSP1 C-terminal conserved region; InterPro: IPR007557 The yeast polymerase suppressor 1 (PSP1) protein partially suppresses mutations in DNA polymerases alpha and delta []. The C-terminal half of PSP1 contains a domain, which is also found in several hypothetical proteins from both eukaryotic and prokaryotic sources: Crithidia fasciculata RBP45 and RBP33, subunits of the cycling sequence binding protein (CSBP) II. RBP45 and RBP33 proteins bind specifically to the cycling sequences present in several mRNAs that accumulate periodically during the cell cycle. RBP45 and RBP33 are phosphoproteins, which are phosphorylated differentially during progression through the cell cycle. Hypothetical proteins with high sequence similarity have been identified in other kinetoplastid organisms []. Bacillus subtilis yaaT protein, which plays a significant role in phosphorelay during initiation of sporulation. It is possible that the yaaT protein is also related to DNA replication. The sequence of the yaaT protein is widely conserved in prokaryotes (bacteria and archaea), but the functions of the protein are unknown []. The actual biological significance of the PSP1 C-terminal domain has not yet been clearly established.
Probab=32.47 E-value=1.6e+02 Score=23.52 Aligned_cols=53 Identities=17% Similarity=0.359 Sum_probs=42.9
Q ss_pred chhHHHHHHHH-hhcCCceEEEEEcCCCEEEE----EeeCCHHHHHHHHHHHhCCcEEE
Q 020800 71 CDSCNQKLRKI-MKIKGLETVNMDVQEDLVKV----KGTVDITEVRSYIKDELKKDVVI 124 (321)
Q Consensus 71 CeGCakKIkKa-lKIkGVesVeVDLkk~kVTV----kGtvDp~kLVeaL~KKtGK~AeI 124 (321)
..-|...|+.. +.|+ +-+++..+..++|++ .+.+|--.|+..|....+.++++
T Consensus 28 l~~c~~~~~~~~L~m~-lvd~e~~~D~~k~~fyy~a~~rvDFR~Lvr~L~~~f~~RIem 85 (88)
T PF04468_consen 28 LKFCRELVKELGLPMK-LVDVEYQFDGSKLTFYYTAESRVDFRELVRDLAREFKTRIEM 85 (88)
T ss_pred HHHHHHHHHHcCCCeE-EEEEEEEcCCCEEEEEEEeCCcCcHHHHHHHHHHHhCceEEE
Confidence 45688888887 7665 558888899999999 36799999999999888877654
No 23
>PF14437 MafB19-deam: MafB19-like deaminase
Probab=27.85 E-value=1.3e+02 Score=27.10 Aligned_cols=41 Identities=15% Similarity=0.335 Sum_probs=31.4
Q ss_pred eEEEEEE-eccchhHHHHHHHHhhcCCceEEEEEcC-CCEEEE
Q 020800 61 GTYVMKI-KLCCDSCNQKLRKIMKIKGLETVNMDVQ-EDLVKV 101 (321)
Q Consensus 61 ~TVVLKV-gMHCeGCakKIkKalKIkGVesVeVDLk-k~kVTV 101 (321)
..++|.| .-.|..|...|....+--|+.++.|-.. ++++.+
T Consensus 100 ~~~tm~Vdr~vC~~C~~~i~~~a~~lGl~~L~I~~~~sG~~~~ 142 (146)
T PF14437_consen 100 RSMTMYVDRDVCGYCGGDIPSMAEKLGLKSLTIHEPDSGKVYY 142 (146)
T ss_pred CeEEEEECcccchHHHHHHHHHHHHcCCCeEEEEecCCCcEEE
Confidence 3456667 7789999999999943349999999887 776654
No 24
>TIGR03406 FeS_long_SufT probable FeS assembly SUF system protein SufT. The function is unknown for this protein family, but members are found almost always in operons for the the SUF system of iron-sulfur cluster biosynthesis. The SUF system is present elsewhere on the chromosome for those few species where SUF genes are not adjacent. This family shares this property of association with the SUF system with a related family, TIGR02945. TIGR02945 consists largely of a DUF59 domain (see Pfam family pfam01883), while this protein is about double the length, with a unique N-terminal domain and DUF59 C-terminal domain. A location immediately downstream of the cysteine desulfurase gene sufS in many contexts suggests the gene symbol sufT. Note that some other homologs of this family and of TIGR02945, but no actual members of this family, are found in operons associated with phenylacetic acid (or other ring-hydroxylating) degradation pathways.
Probab=21.74 E-value=1.1e+02 Score=27.74 Aligned_cols=33 Identities=9% Similarity=0.411 Sum_probs=23.1
Q ss_pred EEEEEEeccchhHH------HHHHHH-hhcCCceEEEEEc
Q 020800 62 TYVMKIKLCCDSCN------QKLRKI-MKIKGLETVNMDV 94 (321)
Q Consensus 62 TVVLKVgMHCeGCa------kKIkKa-lKIkGVesVeVDL 94 (321)
.|.|.+.++..+|. ..|+.+ +.++||.+|.|++
T Consensus 114 ~V~I~mtLt~p~c~~~~~L~~dV~~aL~~l~gV~~V~V~l 153 (174)
T TIGR03406 114 RVDIEMTLTAPGCGMGPVLVEDVEDKVLAVPNVDEVEVEL 153 (174)
T ss_pred EEEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCceeEEEEE
Confidence 46666666655554 447777 6789999998875
No 25
>PRK06418 transcription elongation factor NusA-like protein; Validated
Probab=20.96 E-value=4.4e+02 Score=24.07 Aligned_cols=66 Identities=24% Similarity=0.358 Sum_probs=40.0
Q ss_pred ceEEEEEEeccchhHHHHHH------------HH-hhc------CCceEEEEEcCCCEEEE-E--ee--C--CHHHHHHH
Q 020800 60 EGTYVMKIKLCCDSCNQKLR------------KI-MKI------KGLETVNMDVQEDLVKV-K--GT--V--DITEVRSY 113 (321)
Q Consensus 60 v~TVVLKVgMHCeGCakKIk------------Ka-lKI------kGVesVeVDLkk~kVTV-k--Gt--v--Dp~kLVea 113 (321)
+-.+=+|=++-|++|.+.|. ++ +++ .+++-...=.-.++|++ . |. + ---..+..
T Consensus 5 ~~~~c~kt~ilC~~c~~~~~~G~v~~~dv~i~~~l~~l~~~~~l~~~~~~k~~~~ddrvIfvV~~gdg~aIGk~G~~ik~ 84 (166)
T PRK06418 5 ICEVCVKTGLLCPRCQSLLDSGEVTELDVEVSKVLLKLEEDKELKDVEYKKAYEVDDLVILLVTSGPRIPIGKGGKIAKA 84 (166)
T ss_pred eeeEEeccCccChhHHhHhhcCceEEeehHHHHHHHHhhccccccCceEEEEEEeCCEEEEEEeCCCcccccccchHHHH
Confidence 33445566999999999764 45 454 34443222222355555 2 33 0 11257789
Q ss_pred HHHHhCCcEEEE
Q 020800 114 IKDELKKDVVII 125 (321)
Q Consensus 114 L~KKtGK~AeII 125 (321)
|++++|++++||
T Consensus 85 l~~~lgk~VevV 96 (166)
T PRK06418 85 LSRKLGKKVRVV 96 (166)
T ss_pred HHHHhCCcEEEE
Confidence 999999999877
No 26
>PF15643 Tox-PL-2: Papain fold toxin 2
Probab=20.06 E-value=89 Score=26.70 Aligned_cols=21 Identities=24% Similarity=0.621 Sum_probs=17.1
Q ss_pred eccchhHHHHHHHHhhcCCce
Q 020800 68 KLCCDSCNQKLRKIMKIKGLE 88 (321)
Q Consensus 68 gMHCeGCakKIkKalKIkGVe 88 (321)
.++|..||.+|++.+.-.||.
T Consensus 18 ~~qC~~cA~Al~~~L~~~gI~ 38 (100)
T PF15643_consen 18 IFQCVECASALKQFLKQAGIP 38 (100)
T ss_pred ceehHHHHHHHHHHHHHCCCC
Confidence 578999999999996555654
Done!