Query 020803
Match_columns 321
No_of_seqs 356 out of 2259
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 05:16:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020803.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020803hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02300 lactoylglutathione ly 100.0 1.1E-40 2.3E-45 298.1 33.7 261 61-321 22-286 (286)
2 TIGR02295 HpaD 3,4-dihydroxyph 100.0 1.5E-30 3.2E-35 234.0 29.2 229 61-314 2-257 (294)
3 TIGR03211 catechol_2_3 catecho 100.0 1E-30 2.2E-35 236.0 28.0 231 61-312 2-264 (303)
4 TIGR03213 23dbph12diox 2,3-dih 100.0 1.5E-29 3.4E-34 226.4 27.9 229 62-313 2-263 (286)
5 KOG2943 Predicted glyoxalase [ 100.0 1.7E-30 3.6E-35 213.1 19.0 246 61-321 15-278 (299)
6 TIGR01263 4HPPD 4-hydroxypheny 99.9 3.4E-20 7.5E-25 170.4 25.2 218 63-287 2-267 (353)
7 PLN02367 lactoylglutathione ly 99.8 8.3E-20 1.8E-24 154.6 16.1 128 188-317 74-226 (233)
8 COG2514 Predicted ring-cleavag 99.8 5.4E-19 1.2E-23 149.8 20.6 188 61-268 8-242 (265)
9 PRK10291 glyoxalase I; Provisi 99.8 1.7E-19 3.6E-24 142.2 15.2 123 194-316 1-123 (129)
10 TIGR00068 glyox_I lactoylgluta 99.8 3.9E-19 8.5E-24 143.8 16.5 132 186-317 14-145 (150)
11 PLN03042 Lactoylglutathione ly 99.8 9.7E-19 2.1E-23 145.1 15.9 127 188-316 26-177 (185)
12 cd08342 HPPD_N_like N-terminal 99.8 1E-18 2.3E-23 139.0 15.0 121 190-317 1-127 (136)
13 cd07233 Glyoxalase_I Glyoxalas 99.8 3.4E-18 7.4E-23 132.7 15.6 120 190-311 1-121 (121)
14 cd08353 Glo_EDI_BRP_like_7 Thi 99.8 3.1E-18 6.7E-23 137.1 15.5 122 188-313 2-141 (142)
15 PLN02367 lactoylglutathione ly 99.8 5E-18 1.1E-22 143.7 16.9 123 61-185 73-224 (233)
16 PRK10291 glyoxalase I; Provisi 99.8 4.9E-18 1.1E-22 133.8 15.6 122 68-189 1-126 (129)
17 PLN02300 lactoylglutathione ly 99.8 7.1E-18 1.5E-22 150.9 16.8 131 186-316 21-151 (286)
18 TIGR00068 glyox_I lactoylgluta 99.8 1.2E-17 2.6E-22 135.1 16.4 126 61-186 15-144 (150)
19 cd08358 Glo_EDI_BRP_like_21 Th 99.8 1.6E-17 3.4E-22 129.5 15.5 114 189-312 2-126 (127)
20 cd07241 Glo_EDI_BRP_like_3 Thi 99.8 8.7E-18 1.9E-22 131.0 14.2 119 189-311 1-125 (125)
21 PRK11478 putative lyase; Provi 99.8 1.3E-17 2.8E-22 131.1 15.2 121 188-313 5-129 (129)
22 PLN02875 4-hydroxyphenylpyruva 99.8 1.7E-16 3.7E-21 145.2 24.3 218 64-287 1-295 (398)
23 TIGR03645 glyox_marine lactoyl 99.8 1.6E-17 3.4E-22 136.1 15.6 125 187-314 2-152 (162)
24 PLN03042 Lactoylglutathione ly 99.8 4E-17 8.6E-22 135.5 16.7 123 61-185 25-176 (185)
25 cd07243 2_3_CTD_C C-terminal d 99.8 3.3E-17 7.1E-22 131.4 15.4 118 187-313 4-125 (143)
26 cd08360 MhqB_like_C C-terminal 99.8 3.6E-17 7.8E-22 129.7 15.2 120 187-316 1-123 (134)
27 cd07257 THT_oxygenase_C The C- 99.8 1.1E-17 2.4E-22 135.7 12.3 119 189-314 1-126 (153)
28 cd07247 SgaA_N_like N-terminal 99.7 8.5E-17 1.8E-21 123.6 15.1 114 190-312 1-114 (114)
29 TIGR03081 metmalonyl_epim meth 99.7 5.3E-17 1.2E-21 127.2 14.1 119 189-312 1-128 (128)
30 cd08352 Glo_EDI_BRP_like_1 Thi 99.7 7.8E-17 1.7E-21 125.4 14.7 120 188-312 2-125 (125)
31 cd07265 2_3_CTD_N N-terminal d 99.7 6.6E-17 1.4E-21 125.9 13.9 117 187-315 2-121 (122)
32 cd07233 Glyoxalase_I Glyoxalas 99.7 1.8E-16 3.8E-21 123.0 16.0 116 64-181 1-121 (121)
33 PRK04101 fosfomycin resistance 99.7 2E-16 4.4E-21 126.2 14.8 116 188-314 3-120 (139)
34 cd08353 Glo_EDI_BRP_like_7 Thi 99.7 2.8E-16 6.2E-21 125.7 14.9 118 62-183 2-141 (142)
35 cd07256 HPCD_C_class_II C-term 99.7 3.3E-16 7.1E-21 128.2 15.4 120 187-315 1-125 (161)
36 cd08358 Glo_EDI_BRP_like_21 Th 99.7 4.5E-16 9.7E-21 121.3 15.2 110 63-182 2-126 (127)
37 cd07237 BphC1-RGP6_C_like C-te 99.7 2.8E-16 6.1E-21 127.6 14.7 122 186-315 6-133 (154)
38 cd09011 Glo_EDI_BRP_like_23 Th 99.7 2.2E-16 4.7E-21 122.6 13.4 113 189-313 2-119 (120)
39 cd08363 FosB FosB, a fosfomyci 99.7 2.4E-16 5.3E-21 124.5 13.4 114 190-314 1-116 (131)
40 cd07258 PpCmtC_C C-terminal do 99.7 3.6E-16 7.8E-21 124.9 14.2 115 191-317 1-118 (141)
41 cd07253 Glo_EDI_BRP_like_2 Thi 99.7 6.8E-16 1.5E-20 120.1 15.1 117 188-312 2-124 (125)
42 cd07243 2_3_CTD_C C-terminal d 99.7 7E-16 1.5E-20 123.7 15.4 114 61-183 4-125 (143)
43 cd08342 HPPD_N_like N-terminal 99.7 9.2E-16 2E-20 122.0 15.8 116 64-186 1-126 (136)
44 PRK11478 putative lyase; Provi 99.7 4.9E-16 1.1E-20 122.0 13.8 117 61-182 4-128 (129)
45 cd08355 Glo_EDI_BRP_like_14 Th 99.7 1.4E-15 3E-20 118.4 15.9 115 193-312 3-121 (122)
46 cd07264 Glo_EDI_BRP_like_15 Th 99.7 9.9E-16 2.1E-20 119.5 15.0 115 190-313 1-125 (125)
47 cd07263 Glo_EDI_BRP_like_16 Th 99.7 6.3E-16 1.4E-20 119.1 13.5 117 192-312 1-119 (119)
48 cd07257 THT_oxygenase_C The C- 99.7 2.7E-16 5.9E-21 127.6 11.9 115 63-184 1-126 (153)
49 cd08347 PcpA_C_like C-terminal 99.7 1E-15 2.3E-20 124.5 15.0 117 189-314 1-121 (157)
50 cd07245 Glo_EDI_BRP_like_9 Thi 99.7 7.3E-16 1.6E-20 117.5 13.3 113 190-310 1-114 (114)
51 cd09013 BphC-JF8_N_like N-term 99.7 7.1E-16 1.5E-20 119.9 13.4 112 188-314 5-119 (121)
52 cd08364 FosX FosX, a fosfomyci 99.7 1.2E-15 2.5E-20 120.5 14.8 116 188-313 3-122 (131)
53 cd07241 Glo_EDI_BRP_like_3 Thi 99.7 9.1E-16 2E-20 119.5 14.0 115 63-181 1-125 (125)
54 TIGR03645 glyox_marine lactoyl 99.7 9.9E-16 2.1E-20 125.4 14.8 122 61-185 2-153 (162)
55 cd08343 ED_TypeI_classII_C C-t 99.7 1.6E-15 3.6E-20 119.7 14.9 115 191-314 1-118 (131)
56 PRK06724 hypothetical protein; 99.7 1E-15 2.2E-20 120.2 13.6 111 188-314 6-124 (128)
57 cd08346 PcpA_N_like N-terminal 99.7 1E-15 2.3E-20 119.3 13.5 120 189-311 1-126 (126)
58 cd07239 BphC5-RK37_C_like C-te 99.7 1.3E-15 2.8E-20 122.3 14.3 115 187-315 2-119 (144)
59 cd08360 MhqB_like_C C-terminal 99.7 1.5E-15 3.2E-20 120.4 14.5 114 61-184 1-121 (134)
60 PF00903 Glyoxalase: Glyoxalas 99.7 8.5E-17 1.8E-21 125.5 7.2 118 189-310 1-128 (128)
61 cd07266 HPCD_N_class_II N-term 99.7 1E-15 2.3E-20 118.8 13.3 114 188-314 3-119 (121)
62 cd07265 2_3_CTD_N N-terminal d 99.7 1.2E-15 2.7E-20 118.7 13.7 112 61-184 2-120 (122)
63 cd07249 MMCE Methylmalonyl-CoA 99.7 2.1E-15 4.5E-20 118.0 14.7 118 190-312 1-128 (128)
64 cd08351 ChaP_like ChaP, an enz 99.7 2.3E-15 5E-20 117.4 14.3 112 188-314 3-122 (123)
65 cd07246 Glo_EDI_BRP_like_8 Thi 99.7 4.2E-15 9.1E-20 115.3 15.6 115 193-312 5-121 (122)
66 PRK04101 fosfomycin resistance 99.7 2.3E-15 4.9E-20 120.2 14.3 114 60-184 1-120 (139)
67 cd07242 Glo_EDI_BRP_like_6 Thi 99.7 4.1E-15 8.9E-20 116.6 15.6 117 189-313 1-128 (128)
68 cd08361 PpCmtC_N N-terminal do 99.7 1.9E-15 4.1E-20 118.2 13.3 111 188-314 5-120 (124)
69 cd08359 Glo_EDI_BRP_like_22 Th 99.7 4.4E-15 9.4E-20 114.9 14.9 112 192-312 4-119 (119)
70 cd07252 BphC1-RGP6_N_like N-te 99.7 3.8E-15 8.3E-20 115.7 14.6 111 189-313 2-117 (120)
71 cd09014 BphC-JF8_C_like C-term 99.7 3.2E-15 6.9E-20 122.9 14.8 120 188-313 5-127 (166)
72 cd08352 Glo_EDI_BRP_like_1 Thi 99.7 3.9E-15 8.5E-20 115.7 14.1 116 62-182 2-125 (125)
73 cd07255 Glo_EDI_BRP_like_12 Th 99.6 6.8E-15 1.5E-19 114.8 14.8 116 189-315 2-121 (125)
74 cd07256 HPCD_C_class_II C-term 99.6 6.4E-15 1.4E-19 120.5 15.1 115 61-184 1-124 (161)
75 cd07237 BphC1-RGP6_C_like C-te 99.6 5.4E-15 1.2E-19 120.1 14.4 116 61-184 7-132 (154)
76 cd07240 ED_TypeI_classII_N N-t 99.6 6E-15 1.3E-19 113.6 14.0 110 189-313 2-114 (117)
77 cd07238 Glo_EDI_BRP_like_5 Thi 99.6 7.2E-15 1.6E-19 112.5 14.2 109 192-313 3-111 (112)
78 TIGR03081 metmalonyl_epim meth 99.6 3.7E-15 8E-20 116.7 12.4 115 63-182 1-128 (128)
79 cd08348 BphC2-C3-RGP6_C_like T 99.6 1.7E-14 3.7E-19 114.1 16.0 120 189-316 1-123 (134)
80 cd08349 BLMA_like Bleomycin bi 99.6 1.2E-14 2.6E-19 110.9 14.2 109 194-312 3-112 (112)
81 cd07258 PpCmtC_C C-terminal do 99.6 7.9E-15 1.7E-19 117.2 13.6 109 65-185 1-116 (141)
82 cd07235 MRD Mitomycin C resist 99.6 7.5E-15 1.6E-19 114.2 13.0 113 190-311 1-121 (122)
83 cd08350 BLMT_like BLMT, a bleo 99.6 1E-14 2.2E-19 113.2 13.7 108 192-313 5-119 (120)
84 PF12681 Glyoxalase_2: Glyoxal 99.6 3.3E-15 7.1E-20 113.5 10.5 108 195-311 1-108 (108)
85 cd07267 THT_Oxygenase_N N-term 99.6 1.2E-14 2.6E-19 111.7 13.6 109 188-313 2-110 (113)
86 cd08362 BphC5-RrK37_N_like N-t 99.6 1E-14 2.2E-19 112.9 13.4 112 188-314 2-118 (120)
87 cd07244 FosA FosA, a Fosfomyci 99.6 9.8E-15 2.1E-19 113.5 13.3 109 189-314 1-111 (121)
88 cd07261 Glo_EDI_BRP_like_11 Th 99.6 1.6E-14 3.4E-19 110.9 14.0 108 193-311 2-113 (114)
89 cd08345 Fosfomycin_RP Fosfomyc 99.6 9E-15 1.9E-19 112.0 12.5 109 192-313 1-111 (113)
90 cd09012 Glo_EDI_BRP_like_24 Th 99.6 1.3E-14 2.9E-19 113.2 13.4 113 190-312 1-123 (124)
91 cd08354 Glo_EDI_BRP_like_13 Th 99.6 1.7E-14 3.7E-19 111.9 14.0 114 190-313 1-122 (122)
92 cd07262 Glo_EDI_BRP_like_19 Th 99.6 2.1E-14 4.6E-19 111.8 14.4 114 190-311 1-122 (123)
93 KOG0638 4-hydroxyphenylpyruvat 99.6 2.2E-15 4.8E-20 129.3 9.5 248 61-314 15-338 (381)
94 cd09014 BphC-JF8_C_like C-term 99.6 2.5E-14 5.5E-19 117.6 14.9 118 61-184 4-128 (166)
95 cd09013 BphC-JF8_N_like N-term 99.6 2.1E-14 4.6E-19 111.6 13.4 109 61-184 4-119 (121)
96 cd07266 HPCD_N_class_II N-term 99.6 1.3E-14 2.9E-19 112.6 12.1 110 61-183 2-118 (121)
97 cd07239 BphC5-RK37_C_like C-te 99.6 2.8E-14 6E-19 114.5 14.1 110 62-185 3-119 (144)
98 cd07254 Glo_EDI_BRP_like_20 Th 99.6 5.7E-14 1.2E-18 108.9 15.3 112 191-314 3-118 (120)
99 cd07247 SgaA_N_like N-terminal 99.6 3.9E-14 8.4E-19 108.7 14.1 110 64-182 1-114 (114)
100 cd08343 ED_TypeI_classII_C C-t 99.6 5.1E-14 1.1E-18 111.1 15.1 112 65-185 1-119 (131)
101 cd08363 FosB FosB, a fosfomyci 99.6 2E-14 4.3E-19 113.5 12.2 110 64-184 1-116 (131)
102 cd08361 PpCmtC_N N-terminal do 99.6 3.6E-14 7.7E-19 110.9 13.4 108 61-184 4-120 (124)
103 PF00903 Glyoxalase: Glyoxalas 99.6 1E-14 2.2E-19 113.7 10.2 116 63-180 1-128 (128)
104 cd08351 ChaP_like ChaP, an enz 99.6 4.2E-14 9.2E-19 110.3 13.4 109 60-183 1-121 (123)
105 cd08364 FosX FosX, a fosfomyci 99.6 4.9E-14 1.1E-18 111.3 13.8 116 60-184 1-123 (131)
106 cd08357 Glo_EDI_BRP_like_18 Th 99.6 3.2E-14 7E-19 110.8 12.6 113 192-312 2-124 (125)
107 cd07249 MMCE Methylmalonyl-CoA 99.6 4E-14 8.6E-19 110.6 13.2 115 64-182 1-128 (128)
108 cd07252 BphC1-RGP6_N_like N-te 99.6 4.8E-14 1E-18 109.5 13.2 108 63-184 2-118 (120)
109 cd06587 Glo_EDI_BRP_like This 99.6 4.9E-14 1.1E-18 106.4 12.8 112 192-310 1-112 (112)
110 cd08347 PcpA_C_like C-terminal 99.6 7.7E-14 1.7E-18 113.5 14.5 114 63-185 1-122 (157)
111 cd07263 Glo_EDI_BRP_like_16 Th 99.6 5.8E-14 1.3E-18 108.0 13.1 113 66-182 1-119 (119)
112 COG3324 Predicted enzyme relat 99.6 1.2E-13 2.6E-18 105.9 14.5 120 187-314 7-126 (127)
113 cd07255 Glo_EDI_BRP_like_12 Th 99.6 1.2E-13 2.7E-18 107.7 14.8 113 62-185 1-121 (125)
114 cd08344 MhqB_like_N N-terminal 99.6 9.1E-14 2E-18 106.5 13.5 106 189-313 2-109 (112)
115 cd08346 PcpA_N_like N-terminal 99.6 9E-14 1.9E-18 108.2 13.7 116 63-181 1-126 (126)
116 cd07240 ED_TypeI_classII_N N-t 99.6 1E-13 2.2E-18 106.6 13.7 107 62-183 1-114 (117)
117 cd07253 Glo_EDI_BRP_like_2 Thi 99.6 9.7E-14 2.1E-18 107.8 13.6 113 62-182 2-124 (125)
118 cd07245 Glo_EDI_BRP_like_9 Thi 99.6 4.8E-14 1E-18 107.3 11.0 109 64-180 1-114 (114)
119 cd09011 Glo_EDI_BRP_like_23 Th 99.6 7.2E-14 1.6E-18 108.4 12.0 109 63-183 2-119 (120)
120 cd07242 Glo_EDI_BRP_like_6 Thi 99.5 2.2E-13 4.8E-18 106.7 14.7 113 63-183 1-128 (128)
121 PRK06724 hypothetical protein; 99.5 1.6E-13 3.5E-18 107.7 13.8 108 60-183 4-123 (128)
122 cd08356 Glo_EDI_BRP_like_17 Th 99.5 1.1E-13 2.3E-18 106.4 12.3 104 193-312 5-113 (113)
123 cd08348 BphC2-C3-RGP6_C_like T 99.5 4.4E-13 9.6E-18 105.9 15.5 116 63-186 1-123 (134)
124 cd07251 Glo_EDI_BRP_like_10 Th 99.5 2.5E-13 5.4E-18 105.1 13.4 110 193-312 2-120 (121)
125 cd08355 Glo_EDI_BRP_like_14 Th 99.5 1.1E-12 2.4E-17 101.9 16.4 112 66-182 2-121 (122)
126 TIGR03211 catechol_2_3 catecho 99.5 2E-13 4.4E-18 123.2 13.9 115 188-315 3-120 (303)
127 cd07267 THT_Oxygenase_N N-term 99.5 4.7E-13 1E-17 102.7 13.7 105 62-183 2-110 (113)
128 cd08362 BphC5-RrK37_N_like N-t 99.5 4.3E-13 9.3E-18 103.8 13.1 109 62-184 2-118 (120)
129 TIGR02295 HpaD 3,4-dihydroxyph 99.5 4E-13 8.7E-18 120.7 14.8 115 61-184 134-257 (294)
130 cd07246 Glo_EDI_BRP_like_8 Thi 99.5 1.5E-12 3.2E-17 100.9 15.9 111 67-182 5-121 (122)
131 KOG2944 Glyoxalase [Carbohydra 99.5 4E-13 8.7E-18 104.4 11.9 118 188-313 41-168 (170)
132 cd08359 Glo_EDI_BRP_like_22 Th 99.5 7.4E-13 1.6E-17 102.3 12.7 107 66-182 4-119 (119)
133 cd07264 Glo_EDI_BRP_like_15 Th 99.5 1.2E-12 2.5E-17 102.0 13.6 111 64-183 1-125 (125)
134 PF12681 Glyoxalase_2: Glyoxal 99.5 1E-12 2.2E-17 99.6 12.2 104 69-181 1-108 (108)
135 cd07244 FosA FosA, a Fosfomyci 99.5 9.4E-13 2E-17 102.3 12.2 105 63-184 1-111 (121)
136 TIGR03213 23dbph12diox 2,3-dih 99.5 1.5E-12 3.2E-17 116.6 14.1 113 61-182 140-262 (286)
137 cd07238 Glo_EDI_BRP_like_5 Thi 99.4 2.7E-12 6E-17 98.1 13.3 105 66-183 3-111 (112)
138 cd07262 Glo_EDI_BRP_like_19 Th 99.4 2.5E-12 5.5E-17 100.0 13.2 110 64-181 1-122 (123)
139 cd08345 Fosfomycin_RP Fosfomyc 99.4 1.5E-12 3.3E-17 99.6 11.7 105 66-183 1-111 (113)
140 cd08354 Glo_EDI_BRP_like_13 Th 99.4 3.1E-12 6.8E-17 99.1 13.2 109 64-182 1-121 (122)
141 PF13669 Glyoxalase_4: Glyoxal 99.4 7.4E-13 1.6E-17 101.0 9.2 95 191-287 1-97 (109)
142 cd07254 Glo_EDI_BRP_like_20 Th 99.4 6E-12 1.3E-16 97.4 13.9 108 65-184 3-118 (120)
143 cd06587 Glo_EDI_BRP_like This 99.4 4.3E-12 9.3E-17 95.6 12.8 108 66-180 1-112 (112)
144 cd08344 MhqB_like_N N-terminal 99.4 4.6E-12 1E-16 97.0 12.7 103 63-184 2-110 (112)
145 COG3185 4-hydroxyphenylpyruvat 99.4 1.3E-11 2.8E-16 108.5 16.7 219 61-287 20-274 (363)
146 COG3324 Predicted enzyme relat 99.4 5.1E-12 1.1E-16 97.0 12.4 116 60-184 6-126 (127)
147 cd08349 BLMA_like Bleomycin bi 99.4 8.2E-12 1.8E-16 95.1 13.4 105 68-182 3-112 (112)
148 cd08357 Glo_EDI_BRP_like_18 Th 99.4 4.2E-12 9.1E-17 98.8 11.6 109 66-182 2-124 (125)
149 PF13669 Glyoxalase_4: Glyoxal 99.4 3.8E-12 8.2E-17 97.1 10.9 102 65-168 1-108 (109)
150 KOG2943 Predicted glyoxalase [ 99.4 2.4E-12 5.2E-17 106.6 9.8 120 186-314 14-144 (299)
151 cd07235 MRD Mitomycin C resist 99.4 5.9E-12 1.3E-16 97.7 11.7 109 64-181 1-121 (122)
152 KOG2944 Glyoxalase [Carbohydra 99.4 4.7E-12 1E-16 98.5 10.7 116 61-183 40-168 (170)
153 cd09012 Glo_EDI_BRP_like_24 Th 99.4 7.6E-12 1.6E-16 97.5 11.8 109 64-182 1-123 (124)
154 cd08350 BLMT_like BLMT, a bleo 99.4 1.7E-11 3.7E-16 95.0 12.8 104 66-183 5-119 (120)
155 cd07261 Glo_EDI_BRP_like_11 Th 99.4 1.5E-11 3.2E-16 94.3 12.0 104 67-181 2-113 (114)
156 COG2514 Predicted ring-cleavag 99.3 3.6E-11 7.8E-16 102.5 13.0 117 186-314 7-127 (265)
157 cd08356 Glo_EDI_BRP_like_17 Th 99.3 8.3E-11 1.8E-15 90.2 11.6 100 67-182 5-113 (113)
158 cd07250 HPPD_C_like C-terminal 99.2 8.1E-11 1.8E-15 98.9 10.7 98 188-287 2-112 (191)
159 cd07251 Glo_EDI_BRP_like_10 Th 99.2 2.4E-10 5.1E-15 88.2 12.3 106 67-182 2-120 (121)
160 cd06588 PhnB_like Escherichia 99.2 1E-09 2.2E-14 86.2 14.0 112 193-311 3-128 (128)
161 COG3565 Predicted dioxygenase 99.2 4.5E-10 9.7E-15 82.6 10.9 120 189-316 4-132 (138)
162 COG2764 PhnB Uncharacterized p 99.1 2.3E-09 4.9E-14 83.8 14.1 116 194-314 5-132 (136)
163 COG3607 Predicted lactoylgluta 99.1 1.4E-09 2.9E-14 81.6 10.9 114 190-313 4-127 (133)
164 cd07250 HPPD_C_like C-terminal 99.0 2.3E-09 5E-14 90.0 10.7 95 62-158 2-113 (191)
165 COG0346 GloA Lactoylglutathion 99.0 1.2E-09 2.5E-14 84.9 8.3 121 189-312 2-138 (138)
166 TIGR01263 4HPPD 4-hydroxypheny 98.9 2.8E-08 6.1E-13 91.6 15.3 121 189-314 2-128 (353)
167 COG3565 Predicted dioxygenase 98.9 7.8E-09 1.7E-13 76.1 8.6 113 63-183 4-129 (138)
168 PF13468 Glyoxalase_3: Glyoxal 98.9 8.1E-08 1.8E-12 79.6 14.1 143 64-211 1-175 (175)
169 COG2764 PhnB Uncharacterized p 98.8 6.1E-07 1.3E-11 70.2 14.8 113 68-185 5-133 (136)
170 PRK01037 trmD tRNA (guanine-N( 98.7 1.2E-07 2.6E-12 84.5 11.5 106 188-313 246-354 (357)
171 cd06588 PhnB_like Escherichia 98.7 5.6E-07 1.2E-11 70.5 14.0 106 68-180 4-127 (128)
172 COG0346 GloA Lactoylglutathion 98.7 8E-08 1.7E-12 74.4 7.4 117 63-182 2-138 (138)
173 KOG0638 4-hydroxyphenylpyruvat 98.5 2.4E-07 5.2E-12 80.4 6.9 130 188-319 16-154 (381)
174 PF14506 CppA_N: CppA N-termin 98.5 4.2E-06 9.2E-11 62.7 12.2 110 65-184 2-115 (125)
175 PRK10148 hypothetical protein; 98.5 8.7E-06 1.9E-10 65.3 15.0 116 194-317 6-145 (147)
176 PF14506 CppA_N: CppA N-termin 98.3 1.4E-05 3.1E-10 59.9 11.3 113 191-315 2-116 (125)
177 COG3607 Predicted lactoylgluta 98.2 9.3E-06 2E-10 61.2 8.8 113 63-185 3-129 (133)
178 PLN02875 4-hydroxyphenylpyruva 98.1 8.7E-05 1.9E-09 68.7 14.9 122 190-315 1-153 (398)
179 PF13468 Glyoxalase_3: Glyoxal 97.9 2E-05 4.3E-10 65.2 6.3 87 190-282 1-101 (175)
180 PRK01037 trmD tRNA (guanine-N( 97.9 8.1E-05 1.8E-09 66.7 9.5 103 61-183 245-354 (357)
181 PRK10148 hypothetical protein; 97.9 0.0015 3.3E-08 52.3 15.8 105 75-187 18-145 (147)
182 PF14696 Glyoxalase_5: Hydroxy 97.8 0.0002 4.3E-09 56.4 9.9 118 188-316 8-129 (139)
183 COG3185 4-hydroxyphenylpyruvat 97.7 6E-05 1.3E-09 67.0 6.2 94 61-157 165-274 (363)
184 PF14696 Glyoxalase_5: Hydroxy 97.7 0.00055 1.2E-08 53.9 9.9 115 61-186 7-129 (139)
185 PF14507 CppA_C: CppA C-termin 96.4 0.011 2.4E-07 43.5 5.8 92 190-310 6-100 (101)
186 PF06983 3-dmu-9_3-mt: 3-demet 96.3 0.11 2.3E-06 39.8 11.2 96 198-311 11-116 (116)
187 PF15067 FAM124: FAM124 family 95.4 0.36 7.9E-06 41.0 11.4 125 168-310 108-235 (236)
188 PF06983 3-dmu-9_3-mt: 3-demet 95.3 0.51 1.1E-05 36.0 11.2 89 75-181 18-116 (116)
189 PF15067 FAM124: FAM124 family 89.9 2.6 5.7E-05 35.9 8.6 101 63-180 128-235 (236)
190 PF14507 CppA_C: CppA C-termin 85.3 3.5 7.5E-05 30.5 5.9 89 63-179 5-99 (101)
191 COG3865 Uncharacterized protei 74.3 41 0.0009 26.6 10.9 41 262-313 81-124 (151)
192 PF13670 PepSY_2: Peptidase pr 68.3 20 0.00044 25.2 5.7 45 138-184 30-74 (83)
193 PF13670 PepSY_2: Peptidase pr 66.4 17 0.00038 25.6 5.0 45 268-314 30-74 (83)
194 COG4747 ACT domain-containing 65.8 29 0.00062 26.4 6.1 109 139-285 17-135 (142)
195 PF06185 YecM: YecM protein; 53.8 88 0.0019 26.0 7.6 78 188-267 33-114 (185)
196 PF02208 Sorb: Sorbin homologo 52.0 5.9 0.00013 24.4 0.4 25 188-212 10-34 (47)
197 cd04882 ACT_Bt0572_2 C-termina 49.6 38 0.00083 21.9 4.2 26 128-153 39-64 (65)
198 cd04895 ACT_ACR_1 ACT domain-c 49.1 54 0.0012 22.6 4.9 40 269-308 15-55 (72)
199 PF07063 DUF1338: Domain of un 48.6 38 0.00083 30.5 5.2 30 125-154 181-216 (302)
200 cd04882 ACT_Bt0572_2 C-termina 48.0 42 0.00091 21.7 4.2 26 258-283 39-64 (65)
201 cd04883 ACT_AcuB C-terminal AC 43.6 61 0.0013 21.5 4.6 29 258-286 41-71 (72)
202 PRK11700 hypothetical protein; 42.0 2E+02 0.0044 23.9 10.5 78 188-267 38-119 (187)
203 COG4747 ACT domain-containing 41.8 53 0.0012 25.0 4.2 85 131-217 44-135 (142)
204 PF07063 DUF1338: Domain of un 40.8 56 0.0012 29.5 5.0 30 255-284 181-216 (302)
205 COG3254 Uncharacterized conser 40.5 56 0.0012 24.3 4.0 37 270-318 27-63 (105)
206 cd07268 Glo_EDI_BRP_like_4 Thi 39.4 2E+02 0.0043 23.0 9.3 78 129-210 2-94 (149)
207 cd07268 Glo_EDI_BRP_like_4 Thi 39.0 2E+02 0.0043 22.9 10.1 76 190-267 2-81 (149)
208 PRK11700 hypothetical protein; 37.1 2.4E+02 0.0053 23.4 9.3 79 129-211 40-133 (187)
209 KOG4657 Uncharacterized conser 36.0 1.1E+02 0.0024 26.1 5.6 21 198-218 145-165 (246)
210 COG1225 Bcp Peroxiredoxin [Pos 35.5 1.7E+02 0.0037 23.6 6.5 58 258-315 64-140 (157)
211 PTZ00056 glutathione peroxidas 34.2 1.4E+02 0.003 24.9 6.2 18 296-313 146-163 (199)
212 PF06185 YecM: YecM protein; 33.7 1.8E+02 0.0039 24.1 6.5 75 129-209 35-123 (185)
213 COG5397 Uncharacterized conser 31.1 52 0.0011 29.0 3.0 51 262-314 161-212 (349)
214 PF09142 TruB_C: tRNA Pseudour 30.6 94 0.002 20.2 3.6 43 268-316 5-47 (56)
215 cd04897 ACT_ACR_3 ACT domain-c 30.3 1.4E+02 0.0031 20.7 4.6 41 269-309 15-56 (75)
216 COG0264 Tsf Translation elonga 29.8 73 0.0016 28.4 3.8 52 267-318 32-86 (296)
217 PRK09750 hypothetical protein; 29.2 32 0.0007 22.5 1.1 18 16-33 24-41 (64)
218 PF09066 B2-adapt-app_C: Beta2 28.6 2.5E+02 0.0053 20.8 6.8 68 137-208 36-107 (114)
219 COG1437 CyaB Adenylate cyclase 28.3 3.4E+02 0.0074 22.4 14.3 135 132-282 6-161 (178)
220 PF06688 DUF1187: Protein of u 27.8 30 0.00065 22.7 0.8 20 15-34 20-39 (61)
221 PF07494 Reg_prop: Two compone 27.4 71 0.0015 16.5 2.1 14 296-309 7-20 (24)
222 cd04906 ACT_ThrD-I_1 First of 26.8 1.2E+02 0.0027 21.2 4.0 26 130-155 42-71 (85)
223 PRK13490 chemoreceptor glutami 26.5 1.2E+02 0.0025 24.7 4.2 41 266-308 111-151 (162)
224 COG3349 Uncharacterized conser 25.6 1E+02 0.0022 29.7 4.3 38 271-310 14-52 (485)
225 PF03975 CheD: CheD chemotacti 24.9 1E+02 0.0023 23.2 3.5 40 267-308 64-103 (114)
226 PRK13498 chemoreceptor glutami 24.8 1.3E+02 0.0029 24.4 4.3 42 264-307 112-153 (167)
227 PRK12332 tsf elongation factor 24.6 1.1E+02 0.0025 25.6 4.0 52 267-318 31-85 (198)
228 PRK13495 chemoreceptor glutami 24.5 1.4E+02 0.003 24.2 4.3 41 266-308 104-144 (159)
229 TIGR00116 tsf translation elon 24.1 1E+02 0.0023 27.6 3.8 53 267-319 31-84 (290)
230 PF12687 DUF3801: Protein of u 23.9 1.8E+02 0.0038 24.6 5.0 31 125-155 30-60 (204)
231 PRK13494 chemoreceptor glutami 23.4 1.5E+02 0.0032 24.1 4.3 41 266-308 113-153 (163)
232 cd04908 ACT_Bt0572_1 N-termina 23.3 1.6E+02 0.0035 19.2 3.9 23 132-154 43-65 (66)
233 TIGR00318 cyaB adenylyl cyclas 22.6 4.2E+02 0.0091 21.5 15.3 80 132-218 6-104 (174)
234 cd04904 ACT_AAAH ACT domain of 22.6 2.6E+02 0.0055 19.0 4.9 37 139-175 14-51 (74)
235 PRK13493 chemoreceptor glutami 22.2 1.5E+02 0.0033 25.2 4.3 41 266-308 138-178 (213)
236 PRK13497 chemoreceptor glutami 22.1 1.6E+02 0.0035 24.4 4.3 41 266-308 111-151 (184)
237 PRK13491 chemoreceptor glutami 21.5 1.7E+02 0.0036 24.6 4.3 42 266-309 114-155 (199)
238 PF03975 CheD: CheD chemotacti 21.3 1.9E+02 0.0041 21.8 4.3 39 138-178 65-103 (114)
239 COG1395 Predicted transcriptio 20.4 99 0.0022 27.9 2.9 77 2-85 35-112 (313)
240 PRK13488 chemoreceptor glutami 20.2 1.9E+02 0.0041 23.3 4.3 40 266-307 106-145 (157)
No 1
>PLN02300 lactoylglutathione lyase
Probab=100.00 E-value=1.1e-40 Score=298.14 Aligned_cols=261 Identities=89% Similarity=1.449 Sum_probs=212.1
Q ss_pred eeeceEEEEEeCCh----hhhhhccCCEEEEEEeCCCCceEEEEeeeCCCCcceEEEEEeecCCCCcCCCCCceEEEEEe
Q 020803 61 SFFPLIVVFPAGDG----RFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAV 136 (321)
Q Consensus 61 ~~~i~Hv~l~V~D~----~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hl~f~v 136 (321)
..+|+|++|.|+|+ +||+++|||++..+...++..+..+++..++...+..+++....+......+.|+.|++|.|
T Consensus 22 i~~l~Hv~l~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~~~g~~hia~~v 101 (286)
T PLN02300 22 KRRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSNFVVELTYNYGVDKYDIGTGFGHFGIAV 101 (286)
T ss_pred cceEEEEEEEeCCHHHHHHHHHHhcCCEEEEeeecCCCcEEEEEEccCCCCCceEEEEeccCCCCccccCCCccEEEEEe
Confidence 78999999999999 99999999999876555555566778876554455667776544333334556899999999
Q ss_pred CCHHHHHHHHHHcCCeeeeCCcccCCCCeEEEEEECCCCcEEEEEecCCCCCCceEEEEEeCChhHHHHHHHHhcCCeee
Q 020803 137 DDVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGPTPEPLCQVMLRVGDLDRSINFYEQAFGMELL 216 (321)
Q Consensus 137 ~dl~~~~~~l~~~Gv~i~~~p~~~~~g~~~~~~~~DPdG~~iel~~~~~~~~~l~hi~l~v~D~e~a~~FY~~vLG~~~~ 216 (321)
+|+++++++|+++|+++...|...++++.+++||+|||||.|||++..+.+.++.|+.|.|+|++++.+||+++|||++.
T Consensus 102 ~dvd~~~~~l~~~G~~i~~~~~~~~~g~~~~~~~~DPdG~~iEl~~~~~~~~~~~~~~l~~~d~~~a~~Fy~~~lg~~~~ 181 (286)
T PLN02300 102 EDVAKTVELVKAKGGKVTREPGPVKGGKSVIAFVKDPDGYKFELIQRGPTPEPLCQVMLRVGDLDRSIKFYEKAFGMKLL 181 (286)
T ss_pred CCHHHHHHHHHHCCCeeecCCcccCCCceEEEEEECCCCCEEEEEeCCCCCCcceeEEEEeCCHHHHHHHHHhccCCEEE
Confidence 99999999999999999888776665556778999999999999999888999999999999999999999999999997
Q ss_pred cccCCCCCceEEEEeccCCCCcceEEEeeeccCCCccCCCCCeeEEEEEeCCHHHHHHHHHHCCCeeecCCccCCCCCce
Q 020803 217 RKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGTDDVYKTAEAIKLFGGKVTREPGPLPGINTK 296 (321)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~~~hi~f~v~dl~~~~~~l~~~G~~~~~~p~~~~~~~~~ 296 (321)
.....++..+...++..+.......+++....+......+++.+|++|.|+|+++++++++++|+++..+|...|+..++
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~g~~~~~i~~~v~di~~~~~~~~~~G~~v~~~p~~~p~~~~~ 261 (286)
T PLN02300 182 RKRDNPEYKYTIAMMGYGPEDKTTVLELTYNYGVTEYTKGNAYAQIAIGTDDVYKTAEAIKLVGGKITREPGPLPGINTK 261 (286)
T ss_pred eeecccccceEEEEEecCCCCCccEEEEeecCCCCccccCCceeEEEEecCCHHHHHHHHHHcCCeEecCCccCCCCceE
Confidence 65444444566666553322234456765544433344567889999999999999999999999999998888865457
Q ss_pred EEEEECCCCCEEEEEeccccccccC
Q 020803 297 ITACLDPDGWKTVFVDNVDFLKELE 321 (321)
Q Consensus 297 ~~~~~DPdG~~iel~~~~~~~~~~~ 321 (321)
.++|+|||||.|+|++..+|.||+|
T Consensus 262 ~~~~~DPdG~~i~~~~~~~~~~~~~ 286 (286)
T PLN02300 262 ITACLDPDGWKTVFVDNIDFLKELE 286 (286)
T ss_pred EEEEECCCCCEEEEEccchhhhhcC
Confidence 8999999999999999999999987
No 2
>TIGR02295 HpaD 3,4-dihydroxyphenylacetate 2,3-dioxygenase. The enzyme from Bacillus brevis contains manganese.
Probab=100.00 E-value=1.5e-30 Score=233.98 Aligned_cols=229 Identities=22% Similarity=0.269 Sum_probs=163.3
Q ss_pred eeeceEEEEEeCCh----hhhhhccCCEEEEEEeCCCCceEEEEeeeCCCCcceEEEEEeecCCCCcCCCCCceEEEEEe
Q 020803 61 SFFPLIVVFPAGDG----RFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAV 136 (321)
Q Consensus 61 ~~~i~Hv~l~V~D~----~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hl~f~v 136 (321)
..+|+||+|.|+|+ +||+++|||++..+.. ..+++..........+.+.. ....++.|++|.|
T Consensus 2 i~~i~hv~l~v~Dl~~s~~FY~~vLGl~~~~~~~------~~~~~~~~~~~~~~~l~l~~-------~~~~~~~hiaf~v 68 (294)
T TIGR02295 2 ILRTGHVELRVTDLDKSREFYVDLLGFRETESDK------EYIYLRGIEEFQHHSLVLTK-------APSAALSYIGFRV 68 (294)
T ss_pred CceeeEEEEEeCCHHHHHHHHHHccCCEEEEecC------CeEEEeccCcCCceEEEeee-------CCCcCccEEEEEe
Confidence 56899999999999 9999999999876521 13444432222233344432 1234788999999
Q ss_pred C---CHHHHHHHHHHcCCeeeeCCcccCCCCeEEEEEECCCCcEEEEEecCC---------------CCCCceEEEEEeC
Q 020803 137 D---DVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGP---------------TPEPLCQVMLRVG 198 (321)
Q Consensus 137 ~---dl~~~~~~l~~~Gv~i~~~p~~~~~g~~~~~~~~DPdG~~iel~~~~~---------------~~~~l~hi~l~v~ 198 (321)
+ |+++++++|+++|+++...+. + +..+.+||.|||||.+||+.... .+.+++|++|.|+
T Consensus 69 ~~~~dl~~~~~~l~~~Gv~v~~~~~--~-~~~~~~~~~DPdG~~iEl~~~~~~~~~~~~~~~~~~~~~~~~i~Hv~l~v~ 145 (294)
T TIGR02295 69 SKEEDLDKAADFFQKLGHPVRLVRD--G-GQPEALRVEDPFGYPIEFYFEMEKVERLLRRYHRHRGVSPVRLDHFNVFVP 145 (294)
T ss_pred CCHHHHHHHHHHHHhcCCcEEeecC--C-CCceEEEEECCCCCEEEEEEchhhcccccccccccCCccceeeeeEEEEeC
Confidence 7 689999999999999876543 2 23578999999999999997331 1246899999999
Q ss_pred ChhHHHHHHHHhcCCeeecccCCCCCceEEEEeccCCCCcceEEEeeeccCCCccCCCCCeeEEEEEeCC---HHHHHHH
Q 020803 199 DLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGTDD---VYKTAEA 275 (321)
Q Consensus 199 D~e~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~~~hi~f~v~d---l~~~~~~ 275 (321)
|+++|++||+++|||++..+...+.+.....++.... ..+.+.+.. ..+++++|+||.|+| ++++.++
T Consensus 146 dl~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-------~~~~~~~Hiaf~v~d~~~v~~~~~~ 216 (294)
T TIGR02295 146 DVQRALRFYKEELGFRVTEYTEDDEGNLAAAWLHRKG--GVHDIALTN-------GNGPRLHHIAYWVHDPLNIIKACDI 216 (294)
T ss_pred CHHHHHHHHHHhcCCEEEEEeccCCCcEEEEEEecCC--CcCceEeec-------CCCCceeeEEEEcCCHHHHHHHHHH
Confidence 9999999999999999876543333332333333221 123333321 123578999999998 5567899
Q ss_pred HHHCCCe--eecCCccCCCCCceEEEEECCCCCEEEEEecc
Q 020803 276 IKLFGGK--VTREPGPLPGINTKITACLDPDGWKTVFVDNV 314 (321)
Q Consensus 276 l~~~G~~--~~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~ 314 (321)
|+++|++ +...|.....+.+.++|++||+||.||++...
T Consensus 217 l~~~G~~~~~~~~p~~~~~~~~~~~y~~DP~G~~iEl~~~~ 257 (294)
T TIGR02295 217 LASAGLSDSIERGPGRHGVSNAFFLYLRDPDGHRIELYTGD 257 (294)
T ss_pred HHhCCCCcccccCCccCCCCcceEEEEECCCCCEEEEEecc
Confidence 9999997 55566544433346789999999999998754
No 3
>TIGR03211 catechol_2_3 catechol 2,3 dioxygenase. Members of this family all are enzymes active as catechol 2,3 dioxygenase (1.13.11.2), although some members have highly significant activity on catechol derivatives such as 3-methylcatechol, 3-chlorocatechol, and 4-chlorocatechol (see Mars, et al.). This enzyme is also called metapyrocatechase, as it performs a meta-cleavage (an extradiol ring cleavage), in contrast to the ortho-cleavage (intradiol ring cleavage)performed by catechol 1,2-dioxygenase (EC 1.13.11.1), also called pyrocatechase.
Probab=100.00 E-value=1e-30 Score=236.03 Aligned_cols=231 Identities=18% Similarity=0.177 Sum_probs=162.2
Q ss_pred eeeceEEEEEeCCh----hhhhhccCCEEEEEEeCCCCceEEEEeeeCCCCcceEEEEEeecCCCCcCCCCCceEEEEEe
Q 020803 61 SFFPLIVVFPAGDG----RFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAV 136 (321)
Q Consensus 61 ~~~i~Hv~l~V~D~----~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hl~f~v 136 (321)
.++|+||+|.|+|+ +||+++|||++..+.. . .+++.......+..+.+.. ....|+.|++|.|
T Consensus 2 i~~i~Hi~l~V~Dle~s~~FY~~~LG~~~~~~~~---~---~~~~~~~~~~~~~~~~l~~-------~~~~g~~hiaf~v 68 (303)
T TIGR03211 2 VMRLGHVELRVLDLEESLKHYTDVLGLEETGRDG---Q---RVYLKAWDEWDHYSVILTE-------ADTAGLDHMAFKV 68 (303)
T ss_pred cceeeEEEEEeCCHHHHHHHHHHhcCCEEeeecC---c---eEEEEeccccccceEeecc-------CCCCceeEEEEEe
Confidence 35899999999999 9999999999876532 1 2344432211233343332 1234789999999
Q ss_pred C---CHHHHHHHHHHcCCeeeeCCcccCCCCeEEEEEECCCCcEEEEEecCCC---------------------CCCceE
Q 020803 137 D---DVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGPT---------------------PEPLCQ 192 (321)
Q Consensus 137 ~---dl~~~~~~l~~~Gv~i~~~p~~~~~g~~~~~~~~DPdG~~iel~~~~~~---------------------~~~l~h 192 (321)
+ |+++++++|+++|+++...+.....+.++.+||.||+||.|||++.... ..+++|
T Consensus 69 ~~~~dl~~~~~~l~~~G~~~~~~~~~~~~~~g~~~~~~DPdG~~iEl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~H 148 (303)
T TIGR03211 69 ESEADLERLVKRLEAYGVGTGWIPAGELPGVGRRVRFTLPSGHTMELYAEKEYVGELVGGLNPDPWPDPLRGVGARRLDH 148 (303)
T ss_pred CCHHHHHHHHHHHHHcCCCeeeccCCCCCCcceEEEEECCCCCEEEEEEccccccccccccCCcccccccCCcCceeEEE
Confidence 8 6899999999999998765542222345679999999999999984421 235999
Q ss_pred EEEEeCChhHHHHHHHHhcCCeeecccCCCCCce-EEEEeccCCCCcceEEEeeeccCCCccCCCCCeeEEEEEeCC---
Q 020803 193 VMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKY-TIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGTDD--- 268 (321)
Q Consensus 193 i~l~v~D~e~a~~FY~~vLG~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~~~hi~f~v~d--- 268 (321)
|+|.|+|++++++||+++|||++..+...+.+.. ...++..+. ....+.+.. ......++|+||.|+|
T Consensus 149 i~l~V~Dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~------~~~~g~~~Hiaf~v~~~~~ 220 (303)
T TIGR03211 149 CLLYGEDVAENTRFFTEVLGFRLTEQVVLGDGKEQAAAWLSVSN--KAHDIAFVG------DPEPGKLHHVSFFLDSWED 220 (303)
T ss_pred EeEEeCCHHHHHHHHHHhcCCEEEeeEEcCCCcEEEEEEEEcCC--CCcccceec------CCCCCceEEEEEEcCCHHH
Confidence 9999999999999999999999865543332221 223333221 122222221 1112238899999986
Q ss_pred HHHHHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEEEEEe
Q 020803 269 VYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVD 312 (321)
Q Consensus 269 l~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~ 312 (321)
+++++++|+++|+++..+|...+...++++||+|||||.||++.
T Consensus 221 v~~~~~~l~~~G~~~~~~p~~~~~~~~~~~y~~DPdG~~iEl~~ 264 (303)
T TIGR03211 221 VLKAADVMSKNDVSIDIGPTRHGITRGQTIYFFDPSGNRNETFG 264 (303)
T ss_pred HHHHHHHHHhCCCceeeCCcccCCCCceEEEEECCCCCEEEEec
Confidence 55678899999999887776554333578999999999999983
No 4
>TIGR03213 23dbph12diox 2,3-dihydroxybiphenyl 1,2-dioxygenase. Members of this protein family all have activity as 2,3-dihydroxybiphenyl 1,2-dioxygenase, the third enzyme of a pathway for biphenyl degradation. Many of the extradiol ring-cleaving dioxygenases, to which these proteins belong, act on a range of related substrates. Note that some members of this family may be found operons for toluene or naphthalene degradation, where other activities of the same enzyme may be more significant; the trusted cutoff for this model is set relatively high to exclude most such instances.
Probab=99.97 E-value=1.5e-29 Score=226.40 Aligned_cols=229 Identities=17% Similarity=0.198 Sum_probs=162.8
Q ss_pred eeceEEEEEeCCh----hhhhhccCCEEEEEEeCCCCceEEEEeeeCCCCcceEEEEEeecCCCCcCCCCCceEEEEEeC
Q 020803 62 FFPLIVVFPAGDG----RFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVD 137 (321)
Q Consensus 62 ~~i~Hv~l~V~D~----~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hl~f~v~ 137 (321)
.+|+|++|.|+|+ +||+++|||++..+. ++ ...|+.++. .+..+.+... ...++.|++|.|+
T Consensus 2 ~~i~~v~l~V~Dl~~s~~FY~~~LGl~~~~~~--~~---~~~~~~~~~--~~~~~~l~~~-------~~~~~~~~~f~V~ 67 (286)
T TIGR03213 2 RGLGYLGIGVSDVDAWREFATEVLGMMVASEG--EN---DALYLRLDS--RAHRIAVHPG-------ESDDLAYAGWEVA 67 (286)
T ss_pred ceeeEEEEEeCCHHHHHHHHHhccCcccccCC--CC---ceEEEEcCC--CceEEEEEEC-------CcCCeeeEeeeeC
Confidence 4799999999999 999999999976431 11 123555542 2333444321 1246789999999
Q ss_pred C---HHHHHHHHHHcCCeeeeCCcc--cCCCCeEEEEEECCCCcEEEEEecCC--------C----------CCCceEEE
Q 020803 138 D---VAKTVELIKAKGGKVTREPGP--VKGGNTVIAFIEDPDGYKFELLERGP--------T----------PEPLCQVM 194 (321)
Q Consensus 138 d---l~~~~~~l~~~Gv~i~~~p~~--~~~g~~~~~~~~DPdG~~iel~~~~~--------~----------~~~l~hi~ 194 (321)
| ++++.++|+++|+++...+.. ...+.+..++|.|||||.+||+.... . +.+|+||.
T Consensus 68 ~~~~l~~~~~~L~~~Gv~~~~~~~~~~~~~~~~~~~~f~DPdGn~lEl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Hv~ 147 (286)
T TIGR03213 68 DEAGLDQVKEKLEKAGVAVTVASAAEARERGVLGLIKFTDPGGNPLEIYYGAVEDFEKPFVSPRAVSGFVTGDQGLGHIV 147 (286)
T ss_pred CHHHHHHHHHHHHHcCCceEECCHHHhhhccceEEEEEECCCCCEEEEEEcccccCCCCCCCCCCCCccccCCccccEEE
Confidence 8 889999999999998776532 12235678999999999999996321 0 23799999
Q ss_pred EEeCChhHHHHHHHHhcCCeeecccCC--CCC-ceEEEEeccCCCCcceEEEeeeccCCCccCCCCCeeEEEEEeCCHHH
Q 020803 195 LRVGDLDRSINFYEQAFGMELLRKRDN--PEY-KYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGTDDVYK 271 (321)
Q Consensus 195 l~v~D~e~a~~FY~~vLG~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~~~hi~f~v~dl~~ 271 (321)
|.|+|+++|.+||+++|||++...... +++ .+...++..++ .+..+.+.. ....++++|++|.|+|+++
T Consensus 148 l~v~Dle~s~~FY~~~LGf~~~~~~~~~~~~g~~~~~~~l~~~~--~~~~~~l~~------~~~~~~~~Hiaf~v~d~~~ 219 (286)
T TIGR03213 148 LRVPDVDAALAFYTEVLGFQLSDVIDLPAGPGVTVRPYFLHCNE--RHHSLAFAA------GPSEKRLNHLMLEVDTLDD 219 (286)
T ss_pred EEcCCHHHHHHHHHHccCCeEEEeEcccCCCCCcceEEEEEECC--CcceEEEec------CCCCCceEEEEEEcCCHHH
Confidence 999999999999999999998765322 111 11234454322 233344332 1134578999999987666
Q ss_pred ---HHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEEEEEec
Q 020803 272 ---TAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDN 313 (321)
Q Consensus 272 ---~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~~ 313 (321)
++++|+++|+ ....|...+.+..+++|++|||||+||+...
T Consensus 220 v~~~~~~l~~~G~-~~~~~~r~~~~~~~~~y~~DP~G~~iE~~~~ 263 (286)
T TIGR03213 220 VGLALDRVDADGI-VASTLGRHTNDHMVSFYVATPSGWLVEYGWG 263 (286)
T ss_pred HHHHHHHHHHCCC-EEecCCcCCCCCeEEEEEECCCCcEEEeecC
Confidence 8999999999 5556655554445789999999999999764
No 5
>KOG2943 consensus Predicted glyoxalase [Carbohydrate transport and metabolism]
Probab=99.97 E-value=1.7e-30 Score=213.09 Aligned_cols=246 Identities=52% Similarity=0.844 Sum_probs=205.3
Q ss_pred eeeceEEEEEeCCh----hhhhhccCCEEEEEEeCCC-----------CceEEEEeeeCCCCcceEEEEEeecCCCCcCC
Q 020803 61 SFFPLIVVFPAGDG----RFYTECLGMKLLRKRDIPE-----------EKYTNAFLGYGPEDSHFVIELTYNYGVDKYDI 125 (321)
Q Consensus 61 ~~~i~Hv~l~V~D~----~FY~~vLG~~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~ 125 (321)
..|.-|+.+.|.|. .||+++||+++..-.+.+. ++|.-.++++||+..++.++|+.+++...+..
T Consensus 15 ~~r~LH~VfkVgdr~kti~Fyt~vlgMkvLRheef~egc~aacngpyd~kwSktmvGyGpEdshFViELTYNYgV~~Yel 94 (299)
T KOG2943|consen 15 TRRALHYVFKVGDRAKTIDFYTEVLGMKVLRHEEFEEGCEAACNGPYDGKWSKTMVGYGPEDSHFVIELTYNYGVSKYEL 94 (299)
T ss_pred chheeeEeEeecchHHHHHHHHHhhcceeeehhhhhhhhhhhcCCCcccchhhhheecCCCcccEEEEEEeccCccceec
Confidence 67899999999999 9999999999988766665 67888999999999999999999999999999
Q ss_pred CCCceEEEEEeCCHHHHHHHHHHcCCeeeeCCcccCCCCeEEEEEECCCCcEEEEEecCCCCCCceEEEEEeCChhHHHH
Q 020803 126 GTGFGHFGIAVDDVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGPTPEPLCQVMLRVGDLDRSIN 205 (321)
Q Consensus 126 ~~g~~hl~f~v~dl~~~~~~l~~~Gv~i~~~p~~~~~g~~~~~~~~DPdG~~iel~~~~~~~~~l~hi~l~v~D~e~a~~ 205 (321)
|+++.|+.+.++|+-...+.++..|.+ .++..+++++||||+.++|+++.+.+..+..|.|+|.|+++|+.
T Consensus 95 Gndfg~i~I~s~dv~~~ve~v~~p~~~---------~~g~~~~~v~dPdGykF~l~~~~p~s~pv~~V~l~VgdL~ks~k 165 (299)
T KOG2943|consen 95 GNDFGGITIASDDVFSKVEKVNAPGGK---------GSGCGIAFVKDPDGYKFYLIDRGPQSDPVLQVMLNVGDLQKSIK 165 (299)
T ss_pred cCCcccEEEeHHHHHHHHHHhcCcCCc---------ccceEEEEEECCCCcEEEEeccCCCCCCeEEEEEEehhHHHHHH
Confidence 999999999999998888888776542 12455789999999999999999999999999999999999999
Q ss_pred HHHHhcCCeeecccCCCCCceEEEEeccCCCCcceEEEeeeccCCCccCCCCCeeEEEEEeCCHHHHHHHHHHCCCeeec
Q 020803 206 FYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGTDDVYKTAEAIKLFGGKVTR 285 (321)
Q Consensus 206 FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~~~hi~f~v~dl~~~~~~l~~~G~~~~~ 285 (321)
||.+.|||++.... ..+....+++++. ...|||..+.+......+.+...+++-.+++..+.+.++..+.++..
T Consensus 166 yw~~~lgM~ileke----ek~t~~~mgYgd~--q~~LElt~~~~~id~~kg~griafaip~d~~~~l~e~iK~~n~~i~~ 239 (299)
T KOG2943|consen 166 YWEKLLGMKILEKE----EKYTRARMGYGDE--QCVLELTYNYDVIDRAKGFGRIAFAIPTDDLPKLQEAIKSANGTILT 239 (299)
T ss_pred HHHHHhCcchhhhh----hhhhhhhhccCCc--ceEEEEEeccCcccccccceeEEEeccccccccHHHHHHHhcccccc
Confidence 99999999998642 2356677777654 59999999887766666555555555567899999999998777766
Q ss_pred CCccC--CCCC-ceEEEEECCCCCEEEEEeccccccccC
Q 020803 286 EPGPL--PGIN-TKITACLDPDGWKTVFVDNVDFLKELE 321 (321)
Q Consensus 286 ~p~~~--~~~~-~~~~~~~DPdG~~iel~~~~~~~~~~~ 321 (321)
+.... |+.. -.++.+-||||+.|+|+...+|+++.+
T Consensus 240 ~lttl~tPgka~vqvvil~DPDgheicfVdde~F~~lsk 278 (299)
T KOG2943|consen 240 PLTTLDTPGKATVQVVILADPDGHEICFVDDEGFRKLSK 278 (299)
T ss_pred ceeeccCCCcceeEEEEEECCCCceEEEeccHHHHHHhc
Confidence 55433 4432 256789999999999999999998753
No 6
>TIGR01263 4HPPD 4-hydroxyphenylpyruvate dioxygenase. This protein oxidizes 4-hydroxyphenylpyruvate, a tyrosine and phenylalanine catabolite, to homogentisate. Homogentisate can undergo a further non-enzymatic oxidation and polymerization into brown pigments that protect some bacterial species from light. A similar process occurs spontaneously in blood and is hemolytic (see PubMed:8000039). In some bacterial species, this enzyme has been studied as a hemolysin.
Probab=99.87 E-value=3.4e-20 Score=170.43 Aligned_cols=218 Identities=24% Similarity=0.328 Sum_probs=146.6
Q ss_pred eceEEEEEeCCh----hhhhhccCCEEEEEEeCCCCceEEEEeeeCCCCcceEEEEEeecCCCC------cCCCCCceEE
Q 020803 63 FPLIVVFPAGDG----RFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDK------YDIGTGFGHF 132 (321)
Q Consensus 63 ~i~Hv~l~V~D~----~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~------~~~~~g~~hl 132 (321)
.++||.|.|+|+ +||++.|||+.........+. ..+.+..| ...+.+........ ...++|+.|+
T Consensus 2 ~i~hi~~~V~D~~~a~~~y~~~LGf~~~~~~~~~~~~-~~~~~~~G----~~~l~L~~~~~~~s~~~~~~~~hg~gv~~i 76 (353)
T TIGR01263 2 GFDFVEFYVGDAKQAAYYYFTRFGFEKVAKETGHREK-ASHVLRQG----QINFVLTAPYSSDSPAADFAAKHGDGVKDV 76 (353)
T ss_pred ceEEEEEEeCCHHHHHHHHHHhcCCcEEEEeecCCce-eEEEEEeC----CEEEEEecCCCCCchHHHHHHhCCCceEEE
Confidence 689999999999 999999999998763222222 22334432 34566654332221 1367899999
Q ss_pred EEEeCCHHHHHHHHHHcCCeeeeCCcccCCCCeEEEEEECCCCcEEEEEecCC---------------------C----C
Q 020803 133 GIAVDDVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGP---------------------T----P 187 (321)
Q Consensus 133 ~f~v~dl~~~~~~l~~~Gv~i~~~p~~~~~g~~~~~~~~DPdG~~iel~~~~~---------------------~----~ 187 (321)
||.|+|+++++++++++|+++..+|.....|...+.-+..+.|..+-|+++.. . -
T Consensus 77 af~V~Dv~~a~~~l~~~Ga~~v~~p~~~~~g~~~~~~i~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (353)
T TIGR01263 77 AFRVDDAAAAFEAAVERGAEPVQAPVELDEGAVTLATIKGIGDVVHTLVDRGGYKGSFYPGFFESLLDAALHEPPPGVGL 156 (353)
T ss_pred EEEECCHHHHHHHHHHCCCEeccCCccCCCCeEEEEEEECcCCCEEEEEcCCCCCCCCCCCccccccccccccCCCCCCe
Confidence 99999999999999999999987765431022223333444455555444210 0 1
Q ss_pred CCceEEEEEeC--ChhHHHHHHHHhcCCeeecccCCCC--CceEEEEeccCCCCcceEEEeeeccCC---Cc------cC
Q 020803 188 EPLCQVMLRVG--DLDRSINFYEQAFGMELLRKRDNPE--YKYTIAMMGYGPEDKNVVLELTYNYGV---TD------YD 254 (321)
Q Consensus 188 ~~l~hi~l~v~--D~e~a~~FY~~vLG~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~lel~~~~~~---~~------~~ 254 (321)
.+++|++++|+ |+++++.||+++|||++........ .......+.. ..+...++|..+... .+ ..
T Consensus 157 ~~iDHv~i~V~~~dl~~~~~fY~~~lGf~~~~~~~~~~~~~~~~s~~~~~--~~g~~~i~L~ep~~~~~~s~i~~fl~~~ 234 (353)
T TIGR01263 157 IAIDHLVGNVYRGQMEPWAEFYEKIFGFREIRSFDIKTEYSALNSIVMAS--PDGKVKIPLNEPASGKDKSQIEEFLEFY 234 (353)
T ss_pred EEeeeeEcccCCccHHHHHHHHHHHhCCceeeEEEeccCCccEEEEEEEC--CCCcEEEEEeccCCCCCCCHHHHHHHHc
Confidence 24999999999 9999999999999999876543221 1221112221 123566777653211 11 12
Q ss_pred CCCCeeEEEEEeCCHHHHHHHHHHCCCeeecCC
Q 020803 255 KGNAYAQIAIGTDDVYKTAEAIKLFGGKVTREP 287 (321)
Q Consensus 255 ~~~~~~hi~f~v~dl~~~~~~l~~~G~~~~~~p 287 (321)
.++|+.|+||.|+|+++++++|+++|+++...|
T Consensus 235 ~g~Gv~HiAf~vdDi~~~~~~l~~~Gv~~l~~P 267 (353)
T TIGR01263 235 NGAGVQHIALNTDDIVRTVRALRARGVEFLDTP 267 (353)
T ss_pred CCCCccEEEEEcCCHHHHHHHHHHcCCccCcCC
Confidence 467999999999999999999999999998776
No 7
>PLN02367 lactoylglutathione lyase
Probab=99.84 E-value=8.3e-20 Score=154.55 Aligned_cols=128 Identities=32% Similarity=0.557 Sum_probs=103.7
Q ss_pred CCceEEEEEeCChhHHHHHHHHhcCCeeecccCCCCCceEEEEeccCCC---------------CcceEEEeeeccCCCc
Q 020803 188 EPLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPE---------------DKNVVLELTYNYGVTD 252 (321)
Q Consensus 188 ~~l~hi~l~v~D~e~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~lel~~~~~~~~ 252 (321)
-.+.|+.|+|+|+++|++||+++|||++..+...++.++.+++++.+.. .....|||.++.+...
T Consensus 74 ~~~~HtmlRVkDle~Sl~FYt~vLGm~ll~r~d~pe~~f~lyFL~~~~~~~~p~d~~~r~~~~~~~~~~LELt~n~g~e~ 153 (233)
T PLN02367 74 YIMQQTMYRIKDPKASLDFYSRVLGMSLLKRLDFPEMKFSLYFMGYEDTASAPTDPTERTVWTFGQKATIELTHNWGTES 153 (233)
T ss_pred cEEEEEEEEeCCHHHHHHHHHHhcCCEEeEEEecCCCcEEEEEeecCCccccccccccceeeccCCCCEEEEecCCCCCc
Confidence 3699999999999999999999999999988888877888888864321 1145899987666432
Q ss_pred ------cCCC----CCeeEEEEEeCCHHHHHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEEEEEeccccc
Q 020803 253 ------YDKG----NAYAQIAIGTDDVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDNVDFL 317 (321)
Q Consensus 253 ------~~~~----~~~~hi~f~v~dl~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~~~~ 317 (321)
+..+ .|+.|+||.|+|+++++++|+++|+++..+|...++ .+.+|++|||||+|||++.+...
T Consensus 154 ~~~~~~y~~gn~~p~G~~HIaf~VdDVdaa~erL~a~Gv~~v~~P~~g~~--~riaFIkDPDGn~IEL~e~~~~~ 226 (233)
T PLN02367 154 DPDFKGYHNGNSEPRGFGHIGITVDDVYKACERFEELGVEFVKKPNDGKM--KGIAFIKDPDGYWIEIFDLKTIG 226 (233)
T ss_pred cccchhcccCCCCCCCceEEEEEcCCHHHHHHHHHHCCCEEEeCCccCCc--eEEEEEECCCCCEEEEEeccccc
Confidence 2222 489999999999999999999999999987764333 46889999999999999986543
No 8
>COG2514 Predicted ring-cleavage extradiol dioxygenase [General function prediction only]
Probab=99.84 E-value=5.4e-19 Score=149.79 Aligned_cols=188 Identities=22% Similarity=0.330 Sum_probs=131.0
Q ss_pred eeeceEEEEEeCCh----hhhhhccCCEEEEEEeCCCCceEEEEeeeCCCCcceEEEEEeecCC-CCcCCCCCceEEEEE
Q 020803 61 SFFPLIVVFPAGDG----RFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGV-DKYDIGTGFGHFGIA 135 (321)
Q Consensus 61 ~~~i~Hv~l~V~D~----~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~-~~~~~~~g~~hl~f~ 135 (321)
+..+.-++|.|+|+ .||+++||+++..+.. ..+.++.+. ...+.|.+.... .+.....|+.|++|.
T Consensus 8 ~~~v~~v~L~vrdL~~~~~FY~~ilGL~v~~~~~------~~v~L~vgg---~~LL~L~q~~~a~~~~~~~aGLyH~AfL 78 (265)
T COG2514 8 PTFVGAVTLNVRDLDSMTSFYQEILGLQVLEETD------GSVTLGVGG---TPLLTLEQFPDARRPPPRAAGLYHTAFL 78 (265)
T ss_pred CcEEEEEEEEeccHHHHHHHHHHhhCCeeeeccC------ceEEEeeCC---EEEEEEEeCCCCCCCCccccceeeeeee
Confidence 66899999999999 9999999999987643 234455543 245666654332 223466799999999
Q ss_pred eCC---HHHHHHHHHHcCCeeeeCCcccCCCCeEEEEEECCCCcEEEEEecCCC--------------------------
Q 020803 136 VDD---VAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGPT-------------------------- 186 (321)
Q Consensus 136 v~d---l~~~~~~l~~~Gv~i~~~p~~~~~g~~~~~~~~DPdG~~iel~~~~~~-------------------------- 186 (321)
+++ +..+..++...|+.+.+. .++. ..-.+||.||+||-||++...+.
T Consensus 79 lP~r~~L~~~l~hl~~~~~~l~Ga-~DH~--vSEAlYl~DPEGNGIEiYaDrp~~~W~~~~~~v~m~t~~ld~~~ll~~~ 155 (265)
T COG2514 79 LPTREDLARVLNHLAEEGIPLVGA-SDHL--VSEALYLEDPEGNGIEIYADRPRSTWDWQNDQVKMDTEPLDVEALLEEA 155 (265)
T ss_pred cCCHHHHHHHHHHHHhcCCccccc-Ccch--hheeeeecCCCCCeEEEEecCChHHhcccCCeeeecccccCHHHHhhhc
Confidence 995 778899999999998632 3333 34569999999999999986421
Q ss_pred ----------CCCceEEEEEeCChhHHHHHHHHhcCCeeecccCCCCCceEEEEeccCCCCcceEEEeee-ccCCCcc--
Q 020803 187 ----------PEPLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTY-NYGVTDY-- 253 (321)
Q Consensus 187 ----------~~~l~hi~l~v~D~e~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~-~~~~~~~-- 253 (321)
...|.||.|.|.|+++|.+||+++|||++..+. + .-.|+..++. ++-+.... .......
T Consensus 156 ~~~~~~g~p~~t~IGHvHL~v~~l~eA~~fY~~~LG~~~~~~~--~----~A~F~a~G~Y--HHHia~N~W~s~~~~~~~ 227 (265)
T COG2514 156 TKEPWTGLPAGTIIGHVHLKVADLEEAEQFYEDVLGLEVTARG--P----SALFLASGDY--HHHLAANTWNSRGARPRN 227 (265)
T ss_pred cccccccCCCCcEEeEEEEEeCCHHHHHHHHHHhcCCeeeecC--C----cceEEecCCc--ceeEEEeccccCCCCCCC
Confidence 235999999999999999999999999998762 1 2234444433 34343322 1111111
Q ss_pred CCCCCeeEEEEEeCC
Q 020803 254 DKGNAYAQIAIGTDD 268 (321)
Q Consensus 254 ~~~~~~~hi~f~v~d 268 (321)
....++..+.+.+++
T Consensus 228 ~~~~GLa~~~i~~~~ 242 (265)
T COG2514 228 ANASGLAWLEIHTPD 242 (265)
T ss_pred CCCCCcceEEEEcCC
Confidence 233467777777766
No 9
>PRK10291 glyoxalase I; Provisional
Probab=99.83 E-value=1.7e-19 Score=142.18 Aligned_cols=123 Identities=51% Similarity=0.935 Sum_probs=93.9
Q ss_pred EEEeCChhHHHHHHHHhcCCeeecccCCCCCceEEEEeccCCCCcceEEEeeeccCCCccCCCCCeeEEEEEeCCHHHHH
Q 020803 194 MLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGTDDVYKTA 273 (321)
Q Consensus 194 ~l~v~D~e~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~~~hi~f~v~dl~~~~ 273 (321)
.|.|+|+++|++||+++|||++......+...+.++++..++......+++....+..+...+.+..|+||.|+|+++++
T Consensus 1 ~l~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~hlaf~V~d~~~~~ 80 (129)
T PRK10291 1 MLRVGDLQRSIDFYTNVLGMKLLRTSENPEYKYSLAFVGYGPETEEAVIELTYNWGVDKYELGTAYGHIALSVDNAAEAC 80 (129)
T ss_pred CEEecCHHHHHHHHHhccCCEEEEeecCCCCcEEEEEEccCCCCCcceEEeeecCCCCCCcCCCCeeEEEEEeCCHHHHH
Confidence 37899999999999999999987765555555667777654333345566664433333344567899999999999999
Q ss_pred HHHHHCCCeeecCCccCCCCCceEEEEECCCCCEEEEEecccc
Q 020803 274 EAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDNVDF 316 (321)
Q Consensus 274 ~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~~~ 316 (321)
++|+++|+++..++.+.+++..+.+||+|||||.|||++.++.
T Consensus 81 ~~l~~~G~~~~~~~~~~~~~~~~~~~i~DPdG~~iel~~~~~~ 123 (129)
T PRK10291 81 EKIRQNGGNVTREAGPVKGGTTVIAFVEDPDGYKIELIEEKDA 123 (129)
T ss_pred HHHHHcCCccccCCcccCCCceEEEEEECCCCCEEEEEEcccc
Confidence 9999999998877666655533567899999999999998753
No 10
>TIGR00068 glyox_I lactoylglutathione lyase. Glyoxylase I is a homodimer in many species. In some eukaryotes, including yeasts and plants, the orthologous protein carries a tandem duplication, is twice as long, and hits this model twice.
Probab=99.83 E-value=3.9e-19 Score=143.82 Aligned_cols=132 Identities=48% Similarity=0.872 Sum_probs=98.4
Q ss_pred CCCCceEEEEEeCChhHHHHHHHHhcCCeeecccCCCCCceEEEEeccCCCCcceEEEeeeccCCCccCCCCCeeEEEEE
Q 020803 186 TPEPLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIG 265 (321)
Q Consensus 186 ~~~~l~hi~l~v~D~e~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~~~hi~f~ 265 (321)
...+++|+.|.|+|+++|++||+++|||++..+...+...+..++++.++......+++....+..+...+.+..|++|.
T Consensus 14 ~~~~i~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~hi~f~ 93 (150)
T TIGR00068 14 KKRRLLHTMLRVGDLDKSLDFYTEVLGMKLLRKRDFPEMKFSLAFLGYGDETSAAVIELTHNWGTEKYDLGNGFGHIAIG 93 (150)
T ss_pred CCceEEEEEEEecCHHHHHHHHHHhcCCEEEEEeccCCCceEEEEecCCCCCCccEEEEeecCCCCcccCCCceeEEEEe
Confidence 45689999999999999999999999999876544444444455555433223445555443322222334578899999
Q ss_pred eCCHHHHHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEEEEEeccccc
Q 020803 266 TDDVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDNVDFL 317 (321)
Q Consensus 266 v~dl~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~~~~ 317 (321)
|+|++++.++|.++|+++..+|...+++..+.+||+|||||.|||++...-+
T Consensus 94 v~dld~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DPdG~~iel~~~~~~~ 145 (150)
T TIGR00068 94 VDDVYKACERVRALGGNVVREPGPVKGGTTVIAFVEDPDGYKIELIQRKSTK 145 (150)
T ss_pred cCCHHHHHHHHHHcCCccccCCcccCCCceEEEEEECCCCCEEEEEECCchh
Confidence 9999999999999999998877655655456789999999999999976443
No 11
>PLN03042 Lactoylglutathione lyase; Provisional
Probab=99.81 E-value=9.7e-19 Score=145.14 Aligned_cols=127 Identities=30% Similarity=0.560 Sum_probs=98.5
Q ss_pred CCceEEEEEeCChhHHHHHHHHhcCCeeecccCCCCCceEEEEeccCCCC---------------cceEEEeeeccCCCc
Q 020803 188 EPLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPED---------------KNVVLELTYNYGVTD 252 (321)
Q Consensus 188 ~~l~hi~l~v~D~e~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~lel~~~~~~~~ 252 (321)
-++.|+.|.|+|+++|++||+++|||++..+...++.++.+++++.+... ....+||..+.+...
T Consensus 26 ~~~~Ht~i~V~Dle~Si~FY~~vLG~~~~~r~~~~~~~~~~~fl~~~~~~~~~~~~~~~~~~l~~~~~~lEL~~~~~~~~ 105 (185)
T PLN03042 26 YIMQQTMFRIKDPKASLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDSETAPTDPPERTVWTFGRKATIELTHNWGTES 105 (185)
T ss_pred cEEEEEEEeeCCHHHHHHHHHhhcCCEEEEEEEcCCCceEEEEEecCCcccCCcchhhcccccccCCCEEEEEEcCCCcc
Confidence 47999999999999999999999999998887666666777777643210 245788886543221
Q ss_pred ------cC----CCCCeeEEEEEeCCHHHHHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEEEEEecccc
Q 020803 253 ------YD----KGNAYAQIAIGTDDVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDNVDF 316 (321)
Q Consensus 253 ------~~----~~~~~~hi~f~v~dl~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~~~ 316 (321)
+. .+.++.|++|.|+|+++++++|+++|+++...|....+ .+.+|++|||||.|||++....
T Consensus 106 ~p~~~~~~~~~~~~~G~~Hlaf~V~Dvd~~~~~L~~~Gv~v~~~p~~~~~--~~~~fi~DPdG~~IEl~e~~~~ 177 (185)
T PLN03042 106 DPEFKGYHNGNSDPRGFGHIGITVDDVYKACERFEKLGVEFVKKPDDGKM--KGLAFIKDPDGYWIEIFDLKRI 177 (185)
T ss_pred cccccccccCCCCCCCccEEEEEcCCHHHHHHHHHHCCCeEEeCCccCCc--eeEEEEECCCCCEEEEEECCCc
Confidence 11 12478999999999999999999999999876643222 4678999999999999997654
No 12
>cd08342 HPPD_N_like N-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HPPD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of HPP to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two, instead of three, su
Probab=99.81 E-value=1e-18 Score=138.95 Aligned_cols=121 Identities=18% Similarity=0.232 Sum_probs=92.0
Q ss_pred ceEEEEEeCChhHHHHHHHHhcCCeeecccCCCCCceEEEEeccCCCCcceEEEeeeccCCCc------cCCCCCeeEEE
Q 020803 190 LCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTD------YDKGNAYAQIA 263 (321)
Q Consensus 190 l~hi~l~v~D~e~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~------~~~~~~~~hi~ 263 (321)
++|+.|.|+|+++|++||+++|||++..+...++ .....+.. ....+.+........ ...+.+..|++
T Consensus 1 ~~Hi~i~V~D~e~s~~FY~~vLGf~~~~~~~~~~--~~~~~~~~----g~~~l~l~~~~~~~~~~~~~~~~~~~g~~hia 74 (136)
T cd08342 1 FDHVEFYVGNAKQLASWFSTKLGFEPVAYHGSED--KASYLLRQ----GDINFVLNSPLNSFAPVADFLEKHGDGVCDVA 74 (136)
T ss_pred CeEEEEEeCCHHHHHHHHHHhcCCeEEEecCCCc--eEEEEEEc----CCEEEEEecCCCCCCchHHHHHhcCCceEEEE
Confidence 6899999999999999999999999876543321 22333332 144555553222111 12445789999
Q ss_pred EEeCCHHHHHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEEEEEeccccc
Q 020803 264 IGTDDVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDNVDFL 317 (321)
Q Consensus 264 f~v~dl~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~~~~ 317 (321)
|.|+|+++++++|+++|+++..+|...+++ .+.++++||||+.|||++++...
T Consensus 75 ~~V~Dvda~~~~l~~~G~~v~~~p~~~~~~-~~~~~i~dp~G~~ie~~~~~~~~ 127 (136)
T cd08342 75 FRVDDAAAAYERAVARGAKPVQEPVEEPGE-LKIAAIKGYGDSLHTLVDRKGYK 127 (136)
T ss_pred EEeCCHHHHHHHHHHcCCeEccCceecCCe-EEEEEEeccCCcEEEEEecCCCC
Confidence 999999999999999999999998775654 48999999999999999987664
No 13
>cd07233 Glyoxalase_I Glyoxalase I catalyzes the isomerization of the hemithioacetal, formed by a 2-oxoaldehyde and glutathione, to S-D-lactoylglutathione. Glyoxalase I (also known as lactoylglutathione lyase; EC 4.4.1.5) is part of the glyoxalase system, a two-step system for detoxifying methylglyoxal, a side product of glycolysis. This system is responsible for the conversion of reactive, acyclic alpha-oxoaldehydes into the corresponding alpha-hydroxyacids and involves 2 enzymes, glyoxalase I and II. Glyoxalase I catalyses an intramolecular redox reaction of the hemithioacetal (formed from methylglyoxal and glutathione) to form the thioester, S-D-lactoylglutathione. This reaction involves the transfer of two hydrogen atoms from C1 to C2 of the methylglyoxal, and proceeds via an ene-diol intermediate. Glyoxalase I has a requirement for bound metal ions for catalysis. Eukaryotic glyoxalase I prefers the divalent cation zinc as cofactor, whereas Escherichia coil and other prokaryotic gly
Probab=99.80 E-value=3.4e-18 Score=132.66 Aligned_cols=120 Identities=43% Similarity=0.794 Sum_probs=91.1
Q ss_pred ceEEEEEeCChhHHHHHHHHhcCCeeecccCCCCCceEEEEeccCCCCcceEEEeeeccCC-CccCCCCCeeEEEEEeCC
Q 020803 190 LCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGV-TDYDKGNAYAQIAIGTDD 268 (321)
Q Consensus 190 l~hi~l~v~D~e~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~-~~~~~~~~~~hi~f~v~d 268 (321)
++|++|.|+|+++|.+||+++||+++......++..+..+++..+.......+++....+. .....+.+..|++|.|+|
T Consensus 1 ~~hv~i~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~v~d 80 (121)
T cd07233 1 FLHTMLRVKDLEKSLDFYTDVLGMKLLRRKDFPEGKFTLVFLGYPDEDSEGVLELTYNWGTEEPYDNGNGFGHLAFAVDD 80 (121)
T ss_pred CeeEEEEecCcHHHHHHHHhccCCeEEEEEecCCCceEEEEecCCCCCCccEEEEEecCCCCCCcCCCCCeEEEEEEeCC
Confidence 5899999999999999999999999876554444345556666432113456666654332 122334578899999999
Q ss_pred HHHHHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEEEEE
Q 020803 269 VYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFV 311 (321)
Q Consensus 269 l~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~ 311 (321)
+++++++++++|+++..+|... + .++.+||+|||||.|||+
T Consensus 81 id~~~~~l~~~G~~~~~~~~~~-~-~~~~~~~~DpdG~~iE~~ 121 (121)
T cd07233 81 VYAACERLEEMGVEVTKPPGDG-G-MKGIAFIKDPDGYWIELI 121 (121)
T ss_pred HHHHHHHHHHCCCEEeeCCccC-C-CceEEEEECCCCCEEEeC
Confidence 9999999999999999887655 2 257889999999999985
No 14
>cd08353 Glo_EDI_BRP_like_7 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.79 E-value=3.1e-18 Score=137.10 Aligned_cols=122 Identities=18% Similarity=0.235 Sum_probs=89.9
Q ss_pred CCceEEEEEeCChhHHHHHHHHhcCCeeecccCCCC-----------CceEEEEeccCCCCcceEEEeeeccCCCc----
Q 020803 188 EPLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPE-----------YKYTIAMMGYGPEDKNVVLELTYNYGVTD---- 252 (321)
Q Consensus 188 ~~l~hi~l~v~D~e~a~~FY~~vLG~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~lel~~~~~~~~---- 252 (321)
.+++||+|.|+|+++|++||++ |||++......++ ....+.++... .....++|.....+..
T Consensus 2 ~~i~Hi~i~v~Dl~~s~~FY~~-LG~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~--~g~~~iel~~~~~~~~~~~~ 78 (142)
T cd08353 2 SRMDNVGIVVRDLEAAIAFFLE-LGLELEGRAEIEGEWADRVTGLDGVRVEIAMLRTP--DGHSRLELSKFHHPAVIADH 78 (142)
T ss_pred ceeeeEEEEeCCHHHHHHHHHH-cCCEEccccccChHHHHHhcCCCCceEEEEEEeCC--CCCceEEEEEecCCCCcCcC
Confidence 3689999999999999999998 9998865543211 12334444422 2356777776332211
Q ss_pred ---cCCCCCeeEEEEEeCCHHHHHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEEEEEec
Q 020803 253 ---YDKGNAYAQIAIGTDDVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDN 313 (321)
Q Consensus 253 ---~~~~~~~~hi~f~v~dl~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~~ 313 (321)
...+.+..|+||.|+|+++++++|+++|+++..+|...+++ .+.+|++||||+.|||+|.
T Consensus 79 ~~~~~~~~g~~hia~~v~d~d~~~~~l~~~G~~~~~~~~~~~~~-~r~~~~~DPdG~~iEl~e~ 141 (142)
T cd08353 79 RPAPVNALGLRRVMFAVDDIDARVARLRKHGAELVGEVVQYENS-YRLCYIRGPEGILIELAEQ 141 (142)
T ss_pred CCCCCCCCCceEEEEEeCCHHHHHHHHHHCCCceeCCceecCCC-eEEEEEECCCCCEEEeeec
Confidence 12245788999999999999999999999998766554443 4789999999999999985
No 15
>PLN02367 lactoylglutathione lyase
Probab=99.79 E-value=5e-18 Score=143.74 Aligned_cols=123 Identities=39% Similarity=0.691 Sum_probs=100.3
Q ss_pred eeeceEEEEEeCCh----hhhhhccCCEEEEEEeCCCCceEEEEeeeCCCC---------------cceEEEEEeecCCC
Q 020803 61 SFFPLIVVFPAGDG----RFYTECLGMKLLRKRDIPEEKYTNAFLGYGPED---------------SHFVIELTYNYGVD 121 (321)
Q Consensus 61 ~~~i~Hv~l~V~D~----~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~---------------~~~~l~l~~~~~~~ 121 (321)
.-++.|+.|+|+|+ +||+++||+++..+...+++++.++|+++++.. ....+||..+++..
T Consensus 73 ~~~~~HtmlRVkDle~Sl~FYt~vLGm~ll~r~d~pe~~f~lyFL~~~~~~~~p~d~~~r~~~~~~~~~~LELt~n~g~e 152 (233)
T PLN02367 73 GYIMQQTMYRIKDPKASLDFYSRVLGMSLLKRLDFPEMKFSLYFMGYEDTASAPTDPTERTVWTFGQKATIELTHNWGTE 152 (233)
T ss_pred CcEEEEEEEEeCCHHHHHHHHHHhcCCEEeEEEecCCCcEEEEEeecCCccccccccccceeeccCCCCEEEEecCCCCC
Confidence 56899999999999 999999999999998888888999999754311 13578998766543
Q ss_pred C------cCCC----CCceEEEEEeCCHHHHHHHHHHcCCeeeeCCcccCCCCeEEEEEECCCCcEEEEEecCC
Q 020803 122 K------YDIG----TGFGHFGIAVDDVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGP 185 (321)
Q Consensus 122 ~------~~~~----~g~~hl~f~v~dl~~~~~~l~~~Gv~i~~~p~~~~~g~~~~~~~~DPdG~~iel~~~~~ 185 (321)
. +..+ .|++|+||.|+|+++++++|+++|+++...|.... ..+++|++|||||+|||++...
T Consensus 153 ~~~~~~~y~~gn~~p~G~~HIaf~VdDVdaa~erL~a~Gv~~v~~P~~g~--~~riaFIkDPDGn~IEL~e~~~ 224 (233)
T PLN02367 153 SDPDFKGYHNGNSEPRGFGHIGITVDDVYKACERFEELGVEFVKKPNDGK--MKGIAFIKDPDGYWIEIFDLKT 224 (233)
T ss_pred ccccchhcccCCCCCCCceEEEEEcCCHHHHHHHHHHCCCEEEeCCccCC--ceEEEEEECCCCCEEEEEeccc
Confidence 1 3222 48999999999999999999999999987775432 3567899999999999998754
No 16
>PRK10291 glyoxalase I; Provisional
Probab=99.79 E-value=4.9e-18 Score=133.76 Aligned_cols=122 Identities=58% Similarity=1.019 Sum_probs=93.8
Q ss_pred EEEeCCh----hhhhhccCCEEEEEEeCCCCceEEEEeeeCCCCcceEEEEEeecCCCCcCCCCCceEEEEEeCCHHHHH
Q 020803 68 VFPAGDG----RFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVDDVAKTV 143 (321)
Q Consensus 68 ~l~V~D~----~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hl~f~v~dl~~~~ 143 (321)
.|.|+|+ +||+++|||++..+...++..+.++++..++......+++....+..+...+.++.|+||.|+|+++++
T Consensus 1 ~l~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~hlaf~V~d~~~~~ 80 (129)
T PRK10291 1 MLRVGDLQRSIDFYTNVLGMKLLRTSENPEYKYSLAFVGYGPETEEAVIELTYNWGVDKYELGTAYGHIALSVDNAAEAC 80 (129)
T ss_pred CEEecCHHHHHHHHHhccCCEEEEeecCCCCcEEEEEEccCCCCCcceEEeeecCCCCCCcCCCCeeEEEEEeCCHHHHH
Confidence 3789999 999999999998776555556778888765444445567665444333445568999999999999999
Q ss_pred HHHHHcCCeeeeCCcccCCCCeEEEEEECCCCcEEEEEecCCCCCC
Q 020803 144 ELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGPTPEP 189 (321)
Q Consensus 144 ~~l~~~Gv~i~~~p~~~~~g~~~~~~~~DPdG~~iel~~~~~~~~~ 189 (321)
++|+++|+++..++...+.+..+.+|+.|||||.|||++....+..
T Consensus 81 ~~l~~~G~~~~~~~~~~~~~~~~~~~i~DPdG~~iel~~~~~~~~~ 126 (129)
T PRK10291 81 EKIRQNGGNVTREAGPVKGGTTVIAFVEDPDGYKIELIEEKDAGRG 126 (129)
T ss_pred HHHHHcCCccccCCcccCCCceEEEEEECCCCCEEEEEEccccccc
Confidence 9999999998876655555455678899999999999997754433
No 17
>PLN02300 lactoylglutathione lyase
Probab=99.78 E-value=7.1e-18 Score=150.90 Aligned_cols=131 Identities=52% Similarity=0.875 Sum_probs=101.5
Q ss_pred CCCCceEEEEEeCChhHHHHHHHHhcCCeeecccCCCCCceEEEEeccCCCCcceEEEeeeccCCCccCCCCCeeEEEEE
Q 020803 186 TPEPLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIG 265 (321)
Q Consensus 186 ~~~~l~hi~l~v~D~e~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~~~hi~f~ 265 (321)
...+++|+.|.|+|+++|++||+++|||++..+...+...+...++..++...+..+++....+......+.+..|++|.
T Consensus 21 ~i~~l~Hv~l~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~~~g~~hia~~ 100 (286)
T PLN02300 21 DKRRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSNFVVELTYNYGVDKYDIGTGFGHFGIA 100 (286)
T ss_pred ccceEEEEEEEeCCHHHHHHHHHHhcCCEEEEeeecCCCcEEEEEEccCCCCCceEEEEeccCCCCccccCCCccEEEEE
Confidence 45789999999999999999999999999976554444445555665443334566777654333333345678899999
Q ss_pred eCCHHHHHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEEEEEecccc
Q 020803 266 TDDVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDNVDF 316 (321)
Q Consensus 266 v~dl~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~~~ 316 (321)
|+|+++++++++++|+++..+|...+++..+.+||+|||||.|||+++..-
T Consensus 101 v~dvd~~~~~l~~~G~~i~~~~~~~~~g~~~~~~~~DPdG~~iEl~~~~~~ 151 (286)
T PLN02300 101 VEDVAKTVELVKAKGGKVTREPGPVKGGKSVIAFVKDPDGYKFELIQRGPT 151 (286)
T ss_pred eCCHHHHHHHHHHCCCeeecCCcccCCCceEEEEEECCCCCEEEEEeCCCC
Confidence 999999999999999999888877766544678999999999999997543
No 18
>TIGR00068 glyox_I lactoylglutathione lyase. Glyoxylase I is a homodimer in many species. In some eukaryotes, including yeasts and plants, the orthologous protein carries a tandem duplication, is twice as long, and hits this model twice.
Probab=99.78 E-value=1.2e-17 Score=135.07 Aligned_cols=126 Identities=63% Similarity=1.015 Sum_probs=95.9
Q ss_pred eeeceEEEEEeCCh----hhhhhccCCEEEEEEeCCCCceEEEEeeeCCCCcceEEEEEeecCCCCcCCCCCceEEEEEe
Q 020803 61 SFFPLIVVFPAGDG----RFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAV 136 (321)
Q Consensus 61 ~~~i~Hv~l~V~D~----~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hl~f~v 136 (321)
.++++||.|.|+|+ +||+++|||++..+...++..+..++++.++......+++.......+...+.++.|++|.|
T Consensus 15 ~~~i~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~hi~f~v 94 (150)
T TIGR00068 15 KRRLLHTMLRVGDLDKSLDFYTEVLGMKLLRKRDFPEMKFSLAFLGYGDETSAAVIELTHNWGTEKYDLGNGFGHIAIGV 94 (150)
T ss_pred CceEEEEEEEecCHHHHHHHHHHhcCCEEEEEeccCCCceEEEEecCCCCCCccEEEEeecCCCCcccCCCceeEEEEec
Confidence 67899999999999 99999999999776544444445566665433334445554433323334456889999999
Q ss_pred CCHHHHHHHHHHcCCeeeeCCcccCCCCeEEEEEECCCCcEEEEEecCCC
Q 020803 137 DDVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGPT 186 (321)
Q Consensus 137 ~dl~~~~~~l~~~Gv~i~~~p~~~~~g~~~~~~~~DPdG~~iel~~~~~~ 186 (321)
+|+++++++|+++|+++..+|...+.+..+.+||.||+||.|||++....
T Consensus 95 ~dld~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DPdG~~iel~~~~~~ 144 (150)
T TIGR00068 95 DDVYKACERVRALGGNVVREPGPVKGGTTVIAFVEDPDGYKIELIQRKST 144 (150)
T ss_pred CCHHHHHHHHHHcCCccccCCcccCCCceEEEEEECCCCCEEEEEECCch
Confidence 99999999999999998877765555556788999999999999987643
No 19
>cd08358 Glo_EDI_BRP_like_21 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.77 E-value=1.6e-17 Score=129.45 Aligned_cols=114 Identities=33% Similarity=0.632 Sum_probs=85.8
Q ss_pred CceEEEEEeCChhHHHHHHHHhcCCeeecccCCCC-----------CceEEEEeccCCCCcceEEEeeeccCCCccCCCC
Q 020803 189 PLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPE-----------YKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGN 257 (321)
Q Consensus 189 ~l~hi~l~v~D~e~a~~FY~~vLG~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~ 257 (321)
++.|++|.|+|+++|++||+++|||++..+...++ +.+..+++...+...+..++|.++.+..++..+.
T Consensus 2 ~~~Hv~irV~DlerSi~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~lEL~~n~~~~~~~~g~ 81 (127)
T cd08358 2 RALHFVFKVGNRNKTIKFYREVLGMKVLRHEEFEEGCKAACNGPYDGKWSKTMIGYGPEDDHFVVELTYNYGIGDYELGN 81 (127)
T ss_pred ceEEEEEEeCCHHHHHHHHHHhcCCEEEeeecCccccccccccCCCCcEEEEEEecCCCCCccEEEeEecCCCCCCCCCC
Confidence 68999999999999999999999999887665544 3444445543333346789999876655555454
Q ss_pred CeeEEEEEeCCHHHHHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEEEEEe
Q 020803 258 AYAQIAIGTDDVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVD 312 (321)
Q Consensus 258 ~~~hi~f~v~dl~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~ 312 (321)
+ |++|.|++. ++.++|+++|+++...|. ..++++||||+.|||+.
T Consensus 82 ~--~~hlav~~~-d~~~~l~~~Gv~~~~~~~-------~~~fi~DPDG~~ie~~~ 126 (127)
T cd08358 82 D--FLGITIHSK-QAVSNAKKHNWPVTEVED-------GVYEVKAPGGYKFYLID 126 (127)
T ss_pred C--EEEEEEECH-HHHHHHHHCCCceecCCC-------CEEEEECCCCCEEEEec
Confidence 4 666667776 566999999998875432 27899999999999985
No 20
>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.77 E-value=8.7e-18 Score=130.98 Aligned_cols=119 Identities=21% Similarity=0.289 Sum_probs=85.4
Q ss_pred CceEEEEEeCChhHHHHHHHHhcCCeeecccCCCCCceEEEEeccCCCCcceEEEeeeccCCCc---cCCCCCeeEEEEE
Q 020803 189 PLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTD---YDKGNAYAQIAIG 265 (321)
Q Consensus 189 ~l~hi~l~v~D~e~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~---~~~~~~~~hi~f~ 265 (321)
+++|++|.|+|+++|++||+++|||++......+..++...++..+ .+..+++........ .....+..|+||.
T Consensus 1 ~~~Hi~l~v~dl~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~~g~~hi~f~ 77 (125)
T cd07241 1 KIEHVAIWTKDLERMKAFYVTYFGATSNEKYHNPRKGFESYFLSFD---DGARLELMTRPDIAPSPNEGERTGWAHLAFS 77 (125)
T ss_pred CceEEEEEecCHHHHHHHHHHHhCCEeeceEeCCCCCceEEEEecC---CCcEEEEEcCcccCCCcccCCCCceEEEEEE
Confidence 5799999999999999999999999986543333233344445432 145567664322211 1223478999999
Q ss_pred eC---CHHHHHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEEEEE
Q 020803 266 TD---DVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFV 311 (321)
Q Consensus 266 v~---dl~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~ 311 (321)
|+ |+++++++|+++|+++..+|...+.+ .+.++++|||||.|||.
T Consensus 78 v~~~~~v~~~~~~l~~~g~~~~~~~~~~~~g-~~~~~~~DPdG~~iE~~ 125 (125)
T cd07241 78 VGSKEAVDELTERLRADGYLIIGEPRTTGDG-YYESVILDPEGNRIEIT 125 (125)
T ss_pred CCCHHHHHHHHHHHHHCCCEEEeCceecCCC-eEEEEEECCCCCEEEeC
Confidence 95 58999999999999998776544443 25678999999999983
No 21
>PRK11478 putative lyase; Provisional
Probab=99.77 E-value=1.3e-17 Score=131.10 Aligned_cols=121 Identities=15% Similarity=0.136 Sum_probs=84.3
Q ss_pred CCceEEEEEeCChhHHHHHHHHhcCCeeecccCCCC-CceEEEEeccCCCCcceEEEeeeccCCCc---cCCCCCeeEEE
Q 020803 188 EPLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPE-YKYTIAMMGYGPEDKNVVLELTYNYGVTD---YDKGNAYAQIA 263 (321)
Q Consensus 188 ~~l~hi~l~v~D~e~a~~FY~~vLG~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~lel~~~~~~~~---~~~~~~~~hi~ 263 (321)
.+++|++|.|+|+++|++||+++|||++......+. ..+... +... ....+++........ .....++.|++
T Consensus 5 ~~i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~-~~~~---~~~~l~l~~~~~~~~~~~~~~~~g~~hi~ 80 (129)
T PRK11478 5 KQVHHIAIIATDYAVSKAFYCDILGFTLQSEVYREARDSWKGD-LALN---GQYVIELFSFPFPPERPSRPEACGLRHLA 80 (129)
T ss_pred ceecEEEEEcCCHHHHHHHHHHHhCCEecccccccccccceee-EecC---CCcEEEEEEecCCCCCCCCCCCCceeEEE
Confidence 468999999999999999999999999864322111 122111 1111 145666654222111 12234678999
Q ss_pred EEeCCHHHHHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEEEEEec
Q 020803 264 IGTDDVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDN 313 (321)
Q Consensus 264 f~v~dl~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~~ 313 (321)
|.|+|+++++++|+++|+++...+...+++ .+.+||+|||||.|||++.
T Consensus 81 f~v~d~~~~~~~l~~~G~~~~~~~~~~~~g-~~~~~~~DPdG~~iEl~~~ 129 (129)
T PRK11478 81 FSVDDIDAAVAHLESHNVKCEAIRVDPYTQ-KRFTFFNDPDGLPLELYEQ 129 (129)
T ss_pred EEeCCHHHHHHHHHHcCCeeeccccCCCCC-CEEEEEECCCCCEEEEEeC
Confidence 999999999999999999986443222233 4889999999999999874
No 22
>PLN02875 4-hydroxyphenylpyruvate dioxygenase
Probab=99.77 E-value=1.7e-16 Score=145.16 Aligned_cols=218 Identities=21% Similarity=0.271 Sum_probs=150.3
Q ss_pred ceEEEEEeCCh----hhhhhccCCEEEEEEeCCCC--ceEEEEeeeCCCCcceEEEEEeecCC-----------------
Q 020803 64 PLIVVFPAGDG----RFYTECLGMKLLRKRDIPEE--KYTNAFLGYGPEDSHFVIELTYNYGV----------------- 120 (321)
Q Consensus 64 i~Hv~l~V~D~----~FY~~vLG~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~l~l~~~~~~----------------- 120 (321)
++||.+.|.|. .||+..|||+.+.......+ ......++-| ...+.++....+
T Consensus 1 ~dhvef~v~da~~~~~~f~~~~GF~~~a~~~~~tg~~~~~s~~~r~g----~i~fv~~~~~~~~~~~~~~~~~~~~~~~~ 76 (398)
T PLN02875 1 FHHVEFWCGDATNTARRFSWGLGMPLVAKSDLTTGNTTYASYLLRSG----DLVFLFTAPYSPKIGAGDDDPASTAPHPS 76 (398)
T ss_pred CeEEEEEcCCHHHHHHHHHHhcCCCeEeecCCCCCCcceEEEEEEeC----CEEEEEeCCCCCccccccccccccccccc
Confidence 68999999999 99999999999876442122 1223334422 223333332111
Q ss_pred --CC------cCCCCCceEEEEEeCCHHHHHHHHHHcCCeeeeCCcccCC----CCeEEEEEECCCCcEEEEEecCC---
Q 020803 121 --DK------YDIGTGFGHFGIAVDDVAKTVELIKAKGGKVTREPGPVKG----GNTVIAFIEDPDGYKFELLERGP--- 185 (321)
Q Consensus 121 --~~------~~~~~g~~hl~f~v~dl~~~~~~l~~~Gv~i~~~p~~~~~----g~~~~~~~~DPdG~~iel~~~~~--- 185 (321)
.+ ..+|.|+.-++|+|+|++++++++.++|++...+|..... |.-.+.-+.-+.|..+-|+++..
T Consensus 77 ~~~~~a~~~~~~HG~gV~dvaf~V~Da~~a~~~A~~~Ga~~~~~~~~~~d~~~~g~~~~~~I~~~G~~~h~lVdr~~~~~ 156 (398)
T PLN02875 77 FSSDAARRFFAKHGLAVRAVGVLVEDAEEAFRTSVAHGARPVLEPTELGDEASGGKAVIAEVELYGDVVLRYVSYKGFDG 156 (398)
T ss_pred cCcHHHHHHHHHcCCeeeEEEEEECCHHHHHHHHHHCCCeeccCCccccccccCceEEEEEEEccCCcEEEEEccCCCCC
Confidence 00 1467899999999999999999999999998887765422 12344556677777888777421
Q ss_pred ------------C--------CCCceEEEEEeCChhHHHHHHHHhcCCeeecccCCCC-----CceEEEEeccCCCCcce
Q 020803 186 ------------T--------PEPLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPE-----YKYTIAMMGYGPEDKNV 240 (321)
Q Consensus 186 ------------~--------~~~l~hi~l~v~D~e~a~~FY~~vLG~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ 240 (321)
. -.+|+||+++|++++.++.||+++|||+.......++ .+.....+..+ +...
T Consensus 157 ~~f~p~f~~~~~~~~~~~~~gl~~IDHi~iaV~~ld~a~~fY~~vlGf~~~~~~d~~~i~~~~sgl~S~vl~sp--~g~v 234 (398)
T PLN02875 157 AKFLPGYEPVESSSSFPLDYGLRRLDHAVGNVPNLLPAVNYIAGFTGFHEFAEFTAEDVGTVDSGLNSMVLASN--NEMV 234 (398)
T ss_pred CccCCCcccccccccCCCCCCcceeCcceechhhHHHHHHHHHHhcCCeeeeeeccccccccccceEEEEEEcC--CCcE
Confidence 0 1269999999999999999999999998875443221 11233334322 2356
Q ss_pred EEEeeeccCC----Cc------cCCCCCeeEEEEEeCCHHHHHHHHHHC----CCeeecCC
Q 020803 241 VLELTYNYGV----TD------YDKGNAYAQIAIGTDDVYKTAEAIKLF----GGKVTREP 287 (321)
Q Consensus 241 ~lel~~~~~~----~~------~~~~~~~~hi~f~v~dl~~~~~~l~~~----G~~~~~~p 287 (321)
.++|..+... .+ ...|+|++||||.|+||.+++++|+++ |+++...|
T Consensus 235 ~ipLnEP~~~~~~~SqI~eFL~~~~G~GIQHIAl~tdDI~~av~~Lra~~~~~Gv~fL~~P 295 (398)
T PLN02875 235 LLPLNEPTFGTKRKSQIQTYLEHNEGPGLQHLALKSDDIFGTLREMRARSHIGGFEFMPPP 295 (398)
T ss_pred EEEeccCCCCCCCcChHHHHHHhcCCCCeeEEEeecCCHHHHHHHHHhccccCCeecCCCC
Confidence 7777764321 11 235689999999999999999999999 99998754
No 23
>TIGR03645 glyox_marine lactoylglutathione lyase family protein. Members of this protein family share homology with lactoylglutathione lyase (glyoxalase I) and are found mainly in marine members of the gammaproteobacteria, including CPS_0532 from Colwellia psychrerythraea 34H. This family excludes a well-separated, more narrowly distributed paralogous family, exemplified by CPS_3492 from C. psychrerythraea. The function is of this protein family is unknown.
Probab=99.77 E-value=1.6e-17 Score=136.13 Aligned_cols=125 Identities=22% Similarity=0.264 Sum_probs=87.9
Q ss_pred CCCceEEEEEeCChhHHHHHHHHhcCCeeeccc----CC--------------CCCceEEEEeccCCCCcceEEEeeecc
Q 020803 187 PEPLCQVMLRVGDLDRSINFYEQAFGMELLRKR----DN--------------PEYKYTIAMMGYGPEDKNVVLELTYNY 248 (321)
Q Consensus 187 ~~~l~hi~l~v~D~e~a~~FY~~vLG~~~~~~~----~~--------------~~~~~~~~~~~~~~~~~~~~lel~~~~ 248 (321)
+.+++||+|.|+|+++|++||+++|||++..+. .. ....+.+.++..+ .+..++|....
T Consensus 2 ~~~i~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~---~~~~ieL~~~~ 78 (162)
T TIGR03645 2 PRTFSHIGISVPDLDAAVKFYTEVLGWYLIMPPTEIVEDDSAIGEMCTDVFGEGWGSFKIAHLSTG---DRIGVELFEFK 78 (162)
T ss_pred CceEEEEEEEeCCHHHHHHHHHHhcCCEEEeccccccCCCCCCCchhhHHhCCCcceeeEEEEecC---CCCcEEEEecc
Confidence 457999999999999999999999999875321 10 0112445555532 24557777654
Q ss_pred CCCcc-C----CCCCeeEEEEEeCCHHHHHHHHHHCCCeeecCC-cc-CCCC-CceEEEEECCCCCEEEEEecc
Q 020803 249 GVTDY-D----KGNAYAQIAIGTDDVYKTAEAIKLFGGKVTREP-GP-LPGI-NTKITACLDPDGWKTVFVDNV 314 (321)
Q Consensus 249 ~~~~~-~----~~~~~~hi~f~v~dl~~~~~~l~~~G~~~~~~p-~~-~~~~-~~~~~~~~DPdG~~iel~~~~ 314 (321)
..... . .+.+..|+||.|+|+++++++|+++|+++..++ .. .++. ..+.+|++|||||.|||++..
T Consensus 79 ~~~~~~~~~~~~~~g~~Hla~~v~dida~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~DPdG~~iEl~~~~ 152 (162)
T TIGR03645 79 NQENPEDNFEYWKTGVFHFCVQDPDVEGLAERIVAAGGKKRMPVPRYYYPGEKPYRMIYMEDPFGNILEIYSHS 152 (162)
T ss_pred CCCCCCcccccccccceEEEEEcCCHHHHHHHHHHcCCcccCCCccccCCCCCceEEEEEECCCCCEEEEEEcC
Confidence 32221 1 235789999999999999999999998764432 11 1221 136899999999999999875
No 24
>PLN03042 Lactoylglutathione lyase; Provisional
Probab=99.76 E-value=4e-17 Score=135.51 Aligned_cols=123 Identities=39% Similarity=0.675 Sum_probs=95.8
Q ss_pred eeeceEEEEEeCCh----hhhhhccCCEEEEEEeCCCCceEEEEeeeCCCC---------------cceEEEEEeecCCC
Q 020803 61 SFFPLIVVFPAGDG----RFYTECLGMKLLRKRDIPEEKYTNAFLGYGPED---------------SHFVIELTYNYGVD 121 (321)
Q Consensus 61 ~~~i~Hv~l~V~D~----~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~---------------~~~~l~l~~~~~~~ 121 (321)
.-++.|+.|.|+|+ +||+++|||++..+...+++.+.++|+++++.. ....++|....+..
T Consensus 25 ~~~~~Ht~i~V~Dle~Si~FY~~vLG~~~~~r~~~~~~~~~~~fl~~~~~~~~~~~~~~~~~~l~~~~~~lEL~~~~~~~ 104 (185)
T PLN03042 25 GYIMQQTMFRIKDPKASLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDSETAPTDPPERTVWTFGRKATIELTHNWGTE 104 (185)
T ss_pred CcEEEEEEEeeCCHHHHHHHHHhhcCCEEEEEEEcCCCceEEEEEecCCcccCCcchhhcccccccCCCEEEEEEcCCCc
Confidence 56899999999999 999999999999987777777888888653211 13478887654322
Q ss_pred C------cC----CCCCceEEEEEeCCHHHHHHHHHHcCCeeeeCCcccCCCCeEEEEEECCCCcEEEEEecCC
Q 020803 122 K------YD----IGTGFGHFGIAVDDVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGP 185 (321)
Q Consensus 122 ~------~~----~~~g~~hl~f~v~dl~~~~~~l~~~Gv~i~~~p~~~~~g~~~~~~~~DPdG~~iel~~~~~ 185 (321)
+ +. .+.|+.|++|.|+|+++++++|+++|+.+...|.... ..+++|++|||||.|||++...
T Consensus 105 ~~p~~~~~~~~~~~~~G~~Hlaf~V~Dvd~~~~~L~~~Gv~v~~~p~~~~--~~~~~fi~DPdG~~IEl~e~~~ 176 (185)
T PLN03042 105 SDPEFKGYHNGNSDPRGFGHIGITVDDVYKACERFEKLGVEFVKKPDDGK--MKGLAFIKDPDGYWIEIFDLKR 176 (185)
T ss_pred ccccccccccCCCCCCCccEEEEEcCCHHHHHHHHHHCCCeEEeCCccCC--ceeEEEEECCCCCEEEEEECCC
Confidence 1 21 2248999999999999999999999999987664322 3567889999999999998643
No 25
>cd07243 2_3_CTD_C C-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the C-terminal, catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the C-terminal domain.
Probab=99.76 E-value=3.3e-17 Score=131.43 Aligned_cols=118 Identities=10% Similarity=0.119 Sum_probs=84.7
Q ss_pred CCCceEEEEEeCChhHHHHHHHHhcCCeeecccCCCCCc-eEEEEeccCCCCcceEEEeeeccCCCccCCCCCeeEEEEE
Q 020803 187 PEPLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYK-YTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIG 265 (321)
Q Consensus 187 ~~~l~hi~l~v~D~e~a~~FY~~vLG~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~~~hi~f~ 265 (321)
+.+|+|++|.|+|++++.+||+++|||++..+...+.+. ....++..+. ....+.+.. .+++++.|+||.
T Consensus 4 ~~~l~Hv~l~v~Dle~s~~FY~~vLGf~~~~~~~~~~~~~~~~~~l~~~~--~~h~~~~~~-------~~~~~~~Hiaf~ 74 (143)
T cd07243 4 AHRLDHCLLTGEDIAETTRFFTDVLDFYLAERVVDPDGGTRVGSFLSCSN--KPHDIAFVG-------GPDGKLHHFSFF 74 (143)
T ss_pred CceeCEEEEecCCHHHHHHHHHHhcCCEEEEEEecCCCCeEEEEEEecCC--CcceEEEec-------CCCCCceEEEEE
Confidence 467999999999999999999999999987654322221 1233443221 133333321 113578999999
Q ss_pred eCCHHH---HHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEEEEEec
Q 020803 266 TDDVYK---TAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDN 313 (321)
Q Consensus 266 v~dl~~---~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~~ 313 (321)
|+|+++ +.++|+++|+++..+|..+..+.++++||+|||||.|||++.
T Consensus 75 v~d~~~l~~~~~~l~~~Gv~i~~~p~~~~~~~~~~~yf~DPdG~~iEl~~~ 125 (143)
T cd07243 75 LESWEDVLKAGDIISMNDVSIDIGPTRHGITRGQTIYFFDPSGNRNETFAG 125 (143)
T ss_pred cCCHHHHHHHHHHHHHcCCceEECCcCCCCCCceEEEEECCCCCEEEEecC
Confidence 998777 678999999998777765442335789999999999999764
No 26
>cd08360 MhqB_like_C C-terminal domain of Burkholderia sp. NF100 MhqB and similar proteins; MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. This subfamily contains the C-terminal, catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.76 E-value=3.6e-17 Score=129.74 Aligned_cols=120 Identities=18% Similarity=0.183 Sum_probs=88.1
Q ss_pred CCCceEEEEEeCChhHHHHHHHHhcCCeeecccCCCCCceEEEEeccCCCCcceEEEeeeccCCCccCCCCCeeEEEEEe
Q 020803 187 PEPLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGT 266 (321)
Q Consensus 187 ~~~l~hi~l~v~D~e~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~~~hi~f~v 266 (321)
|.+++|++|.|+|+++|++||+++||+++..... . ...++..+....+..+.+.... ....++.|++|.|
T Consensus 1 ~~~l~hi~l~v~dl~~s~~FY~~vlGl~~~~~~~--~---~~~~~~~~~~~~~~~i~l~~~~-----~~~~g~~hiaf~v 70 (134)
T cd08360 1 PRRLGHVVLFVPDVEAAEAFYRDRLGFRVSDRFK--G---RGAFLRAAGGGDHHNLFLIKTP-----APMAGFHHAAFEV 70 (134)
T ss_pred CceeeEEEEEcCCHHHHHHHHHHhcCCEEEEEec--C---cEEEEECCCCCCCcEEEEecCC-----CCCCcceEEEEEe
Confidence 4689999999999999999999999999875432 1 1233433221234556555321 1235789999999
Q ss_pred CCHHHHH---HHHHHCCCeeecCCccCCCCCceEEEEECCCCCEEEEEecccc
Q 020803 267 DDVYKTA---EAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDNVDF 316 (321)
Q Consensus 267 ~dl~~~~---~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~~~ 316 (321)
+|++++. ++|+++|+++..+|...+.+.++.+||+||+||.|||......
T Consensus 71 ~d~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~y~~DP~G~~iEl~~~~~~ 123 (134)
T cd08360 71 GDIDEVMLGGNHMLRAGYQTGWGPGRHRIGSNYFWYFRDPWGGEVEYGADMDY 123 (134)
T ss_pred CCHHHHHHHHHHHHHcCCccccCCCCcCCCccEEEEEECCCCCEEEEEccccc
Confidence 9888776 5999999998777766555444678999999999999975543
No 27
>cd07257 THT_oxygenase_C The C-terminal domain of 2,4,5-Trihydroxytoluene (THT) oxygenase, which is an extradiol dioxygenease in the 2,4-dinitrotoluene (DNT) degradation pathway. This subfamily contains the C-terminal, catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=99.75 E-value=1.1e-17 Score=135.74 Aligned_cols=119 Identities=17% Similarity=0.164 Sum_probs=85.8
Q ss_pred CceEEEEEeCChhHHHHHHHHhcCCeeecccCCC-CCceEEEEeccCCCC---cceEEEeeeccCCCccCCCCCeeEEEE
Q 020803 189 PLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNP-EYKYTIAMMGYGPED---KNVVLELTYNYGVTDYDKGNAYAQIAI 264 (321)
Q Consensus 189 ~l~hi~l~v~D~e~a~~FY~~vLG~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~~lel~~~~~~~~~~~~~~~~hi~f 264 (321)
+|+||+|.|+|+++|++||+++|||++......+ .......++..+... ....+.+.. ..++++.|+||
T Consensus 1 ri~Hv~l~V~Dle~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~-------~~~~g~~Hiaf 73 (153)
T cd07257 1 RLGHVVLEVPDFAASFDWYTETFGLKPSDVIYLPGPGNPVAAFLRLDRGEEYVDHHTLALAQ-------GPESGVHHAAF 73 (153)
T ss_pred CccEEEEecCCHHHHHHHHHHhcCCeEEeeEecCCCCCcEEEEEecCCCCCcccchHHHHhc-------CCCCceeEEEE
Confidence 5899999999999999999999999987554332 122334445432110 011111111 12468999999
Q ss_pred EeCCHHHHH---HHHHHCCCeeecCCccCCCCCceEEEEECCCCCEEEEEecc
Q 020803 265 GTDDVYKTA---EAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDNV 314 (321)
Q Consensus 265 ~v~dl~~~~---~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~ 314 (321)
.|+|++++. ++|+++|+++..+|.....+....+|++|||||.|||+...
T Consensus 74 ~v~die~~~~~~~~L~~~Gv~v~~~~g~~~~g~~~~~y~~DPdG~~iEl~~~~ 126 (153)
T cd07257 74 EVHDFDAQGLGHDYLREKGYEHVWGVGRHILGSQIFDYWFDPWGFIVEHYTDG 126 (153)
T ss_pred EcCCHHHHHHHHHHHHHCCCcEeecCCccCCCCCEEEEEECCCCCEEEEEcCc
Confidence 999999986 99999999998877766654445679999999999998664
No 28
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=99.74 E-value=8.5e-17 Score=123.61 Aligned_cols=114 Identities=23% Similarity=0.280 Sum_probs=84.7
Q ss_pred ceEEEEEeCChhHHHHHHHHhcCCeeecccCCCCCceEEEEeccCCCCcceEEEeeeccCCCccCCCCCeeEEEEEeCCH
Q 020803 190 LCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGTDDV 269 (321)
Q Consensus 190 l~hi~l~v~D~e~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~~~hi~f~v~dl 269 (321)
+.|++|.|+|+++|++||+++||+++..... +...+.+ +..+. ...+.+....... .......|++|.|+|+
T Consensus 1 ~~hi~l~v~d~~~s~~FY~~~lG~~~~~~~~-~~~~~~~--~~~~~---~~~~~~~~~~~~~--~~~~~~~~~~f~v~di 72 (114)
T cd07247 1 PVWFELPTTDPERAKAFYGAVFGWTFEDMGD-GGGDYAV--FSTGG---GAVGGLMKAPEPA--AGSPPGWLVYFAVDDV 72 (114)
T ss_pred CEEEEeeCCCHHHHHHHHHhccCceeeeccC-CCCceEE--EEeCC---ccEEEEecCCCCC--CCCCCeEEEEEEeCCH
Confidence 4799999999999999999999999875543 2233333 33221 2233333322211 2334677999999999
Q ss_pred HHHHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEEEEEe
Q 020803 270 YKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVD 312 (321)
Q Consensus 270 ~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~ 312 (321)
++++++|+++|+++..+|...+++ ++.++++|||||.|+|+|
T Consensus 73 ~~~~~~l~~~g~~~~~~~~~~~~~-~~~~~~~DPdG~~~~l~~ 114 (114)
T cd07247 73 DAAAARVEAAGGKVLVPPTDIPGV-GRFAVFADPEGAVFGLWQ 114 (114)
T ss_pred HHHHHHHHHCCCEEEeCCcccCCc-EEEEEEECCCCCEEEeEC
Confidence 999999999999999888776654 589999999999999975
No 29
>TIGR03081 metmalonyl_epim methylmalonyl-CoA epimerase. Members of this protein family are the enzyme methylmalonyl-CoA epimerase (EC 5.1.99.1), also called methylmalonyl-CoA racemase. This enzyme converts (2R)-methylmalonyl-CoA to (2S)-methylmalonyl-CoA, which is then a substrate for methylmalonyl-CoA mutase (TIGR00642). It is known in bacteria, archaea, and as a mitochondrial protein in animals. It is closely related to lactoylglutathione lyase (TIGR00068), which is also called glyoxylase I, and is also a homodimer.
Probab=99.74 E-value=5.3e-17 Score=127.19 Aligned_cols=119 Identities=23% Similarity=0.318 Sum_probs=85.4
Q ss_pred CceEEEEEeCChhHHHHHHHHhcCCeeecccCCCCCceEEEEeccCCCCcceEEEeeeccCCCc------cCCCCCeeEE
Q 020803 189 PLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTD------YDKGNAYAQI 262 (321)
Q Consensus 189 ~l~hi~l~v~D~e~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~------~~~~~~~~hi 262 (321)
+++|+.|.|+|++++++||+++|||++......+..+....++..+ ...+++........ ...+.+..|+
T Consensus 1 ~i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~----~~~i~l~~~~~~~~~~~~~~~~~~~g~~~i 76 (128)
T TIGR03081 1 RIDHVGIAVPDLEEAAKLYEDVLGAHVSHIEEVPEQGVKVVFIALG----NTKVELLEPLGEDSPIAKFLEKNGGGIHHI 76 (128)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHhCCCCccceeCCCCCcEEEEEecC----CEEEEEEecCCCCChHHHHHhcCCCceEEE
Confidence 5899999999999999999999999987554333333455555432 34566654222111 0124577899
Q ss_pred EEEeCCHHHHHHHHHHCCCeeecC-CccCCCCCceEEEE--ECCCCCEEEEEe
Q 020803 263 AIGTDDVYKTAEAIKLFGGKVTRE-PGPLPGINTKITAC--LDPDGWKTVFVD 312 (321)
Q Consensus 263 ~f~v~dl~~~~~~l~~~G~~~~~~-p~~~~~~~~~~~~~--~DPdG~~iel~~ 312 (321)
||.|+|+++++++|+++|+++..+ |...+++ .+.+|+ +||||+.||++|
T Consensus 77 ~~~v~di~~~~~~l~~~G~~~~~~~~~~~~~g-~~~~~~~~~dp~G~~~E~~~ 128 (128)
T TIGR03081 77 AIEVDDIEAALETLKEKGVRLIDEEPRIGAGG-KPVAFLHPKSTGGVLIELEE 128 (128)
T ss_pred EEEcCCHHHHHHHHHHCCCcccCCCCccCCCC-CEEEEecccccCcEEEEecC
Confidence 999999999999999999998764 5444443 255566 799999999975
No 30
>cd08352 Glo_EDI_BRP_like_1 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.74 E-value=7.8e-17 Score=125.39 Aligned_cols=120 Identities=20% Similarity=0.261 Sum_probs=85.0
Q ss_pred CCceEEEEEeCChhHHHHHHHHhcCCeeecccCCCC-CceEEEEeccCCCCcceEEEeeeccCCC--c-cCCCCCeeEEE
Q 020803 188 EPLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPE-YKYTIAMMGYGPEDKNVVLELTYNYGVT--D-YDKGNAYAQIA 263 (321)
Q Consensus 188 ~~l~hi~l~v~D~e~a~~FY~~vLG~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~lel~~~~~~~--~-~~~~~~~~hi~ 263 (321)
.+++|++|.|+|++++++||+++|||++......++ ..+.+. +... ....+++....... . ...+.+..|++
T Consensus 2 ~~~~hi~l~v~d~~~a~~fy~~~lG~~~~~~~~~~~~~~~~~~-~~~~---~~~~i~l~~~~~~~~~~~~~~~~g~~h~~ 77 (125)
T cd08352 2 FGIHHVAIICSDYEKSKEFYVEILGFKVIREVYRPERGSYKLD-LLLN---GGYQLELFSFPNPPERPSYPEACGLRHLA 77 (125)
T ss_pred CccceEEEEcCCHHHHHHHHHHhcCCEEeeeeecCCCCcEEEE-EecC---CCcEEEEEEcCCCCCCCCCCcCCCceEEE
Confidence 368999999999999999999999999875432222 223322 2211 13445554322211 1 12335788999
Q ss_pred EEeCCHHHHHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEEEEEe
Q 020803 264 IGTDDVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVD 312 (321)
Q Consensus 264 f~v~dl~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~ 312 (321)
|.|+|++++.++++++|+++..++....++ .+.+|++||+||.|||+|
T Consensus 78 ~~v~d~~~~~~~l~~~G~~~~~~~~~~~~~-~~~~~~~DP~G~~iEl~~ 125 (125)
T cd08352 78 FSVEDIEAAVKHLKAKGVEVEPIRVDEFTG-KRFTFFYDPDGLPLELYE 125 (125)
T ss_pred EEeCCHHHHHHHHHHcCCccccccccCCCc-eEEEEEECCCCCEEEecC
Confidence 999999999999999999987665443443 478999999999999986
No 31
>cd07265 2_3_CTD_N N-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the N-terminal, non-catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the N-terminal do
Probab=99.74 E-value=6.6e-17 Score=125.90 Aligned_cols=117 Identities=17% Similarity=0.175 Sum_probs=83.8
Q ss_pred CCCceEEEEEeCChhHHHHHHHHhcCCeeecccCCCCCceEEEEeccCCCCcceEEEeeeccCCCccCCCCCeeEEEEEe
Q 020803 187 PEPLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGT 266 (321)
Q Consensus 187 ~~~l~hi~l~v~D~e~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~~~hi~f~v 266 (321)
..+++|+.|.|+|+++|.+||+++|||++..... ++ .. ++.......+..+.+.. ....+..|++|.|
T Consensus 2 ~~~l~hv~l~v~Dl~~s~~FY~~~lG~~~~~~~~--~~--~~-~~~~~~~~~~~~~~l~~-------~~~~~~~hiaf~v 69 (122)
T cd07265 2 VLRPGHVQLRVLDLEEAIKHYREVLGLDEVGRDD--QG--RV-YLKAWDEFDHHSIVLRE-------ADTAGLDFMGFKV 69 (122)
T ss_pred cceEeEEEEEeCCHHHHHHHHHhccCCEeeeecC--Cc--eE-EEEccCCCcccEEEecc-------CCCCCeeEEEEEe
Confidence 3579999999999999999999999999865432 11 12 22221111233444431 1234678999999
Q ss_pred C---CHHHHHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEEEEEeccc
Q 020803 267 D---DVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDNVD 315 (321)
Q Consensus 267 ~---dl~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~~ 315 (321)
+ |++++.++++++|+++...|.....+.++.+||+|||||.|||.+..+
T Consensus 70 ~~~~dv~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DPdG~~iE~~~~~~ 121 (122)
T cd07265 70 LDDADLEKLEARLQAYGVAVERIPAGELPGVGRRVRFQLPSGHTMELYADKE 121 (122)
T ss_pred CCHHHHHHHHHHHHHCCCcEEEcccCCCCCCceEEEEECCCCCEEEEEEecc
Confidence 7 899999999999999876554333333578999999999999987653
No 32
>cd07233 Glyoxalase_I Glyoxalase I catalyzes the isomerization of the hemithioacetal, formed by a 2-oxoaldehyde and glutathione, to S-D-lactoylglutathione. Glyoxalase I (also known as lactoylglutathione lyase; EC 4.4.1.5) is part of the glyoxalase system, a two-step system for detoxifying methylglyoxal, a side product of glycolysis. This system is responsible for the conversion of reactive, acyclic alpha-oxoaldehydes into the corresponding alpha-hydroxyacids and involves 2 enzymes, glyoxalase I and II. Glyoxalase I catalyses an intramolecular redox reaction of the hemithioacetal (formed from methylglyoxal and glutathione) to form the thioester, S-D-lactoylglutathione. This reaction involves the transfer of two hydrogen atoms from C1 to C2 of the methylglyoxal, and proceeds via an ene-diol intermediate. Glyoxalase I has a requirement for bound metal ions for catalysis. Eukaryotic glyoxalase I prefers the divalent cation zinc as cofactor, whereas Escherichia coil and other prokaryotic gly
Probab=99.74 E-value=1.8e-16 Score=122.97 Aligned_cols=116 Identities=53% Similarity=0.857 Sum_probs=88.9
Q ss_pred ceEEEEEeCCh----hhhhhccCCEEEEEEeCCCCceEEEEeeeCCCCcceEEEEEeecCC-CCcCCCCCceEEEEEeCC
Q 020803 64 PLIVVFPAGDG----RFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGV-DKYDIGTGFGHFGIAVDD 138 (321)
Q Consensus 64 i~Hv~l~V~D~----~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~-~~~~~~~g~~hl~f~v~d 138 (321)
+.||+|.|+|+ +||+++||+++......+++.+..+++..+.......+++...... .+...+.++.|++|.|+|
T Consensus 1 ~~hv~i~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~v~d 80 (121)
T cd07233 1 FLHTMLRVKDLEKSLDFYTDVLGMKLLRRKDFPEGKFTLVFLGYPDEDSEGVLELTYNWGTEEPYDNGNGFGHLAFAVDD 80 (121)
T ss_pred CeeEEEEecCcHHHHHHHHhccCCeEEEEEecCCCceEEEEecCCCCCCccEEEEEecCCCCCCcCCCCCeEEEEEEeCC
Confidence 58999999999 9999999999987655554456667777543112445666543322 223344578899999999
Q ss_pred HHHHHHHHHHcCCeeeeCCcccCCCCeEEEEEECCCCcEEEEE
Q 020803 139 VAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELL 181 (321)
Q Consensus 139 l~~~~~~l~~~Gv~i~~~p~~~~~g~~~~~~~~DPdG~~iel~ 181 (321)
+++++++++++|+++..+|... ++++.+||.||+||.+|++
T Consensus 81 id~~~~~l~~~G~~~~~~~~~~--~~~~~~~~~DpdG~~iE~~ 121 (121)
T cd07233 81 VYAACERLEEMGVEVTKPPGDG--GMKGIAFIKDPDGYWIELI 121 (121)
T ss_pred HHHHHHHHHHCCCEEeeCCccC--CCceEEEEECCCCCEEEeC
Confidence 9999999999999999887655 3567899999999999985
No 33
>PRK04101 fosfomycin resistance protein FosB; Provisional
Probab=99.72 E-value=2e-16 Score=126.24 Aligned_cols=116 Identities=22% Similarity=0.295 Sum_probs=85.4
Q ss_pred CCceEEEEEeCChhHHHHHHHHhcCCeeecccCCCCCceEEEEeccCCCCcceEEEeeeccCCCccCCCCCeeEEEEEeC
Q 020803 188 EPLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGTD 267 (321)
Q Consensus 188 ~~l~hi~l~v~D~e~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~~~hi~f~v~ 267 (321)
.+++|+.|.|+|+++|.+||+++|||++..+.. ...++..+ +..+.+.............+..|++|.++
T Consensus 3 ~~i~hi~L~v~Dl~~s~~FY~~~lG~~~~~~~~------~~~~~~~~----g~~l~l~~~~~~~~~~~~~~~~hiaf~v~ 72 (139)
T PRK04101 3 KGINHICFSVSNLEKSIEFYEKVLGAKLLVKGR------KTAYFDLN----GLWIALNEEKDIPRNEIHQSYTHIAFSIE 72 (139)
T ss_pred CcEEEEEEEecCHHHHHHHHHhccCCEEEeecC------eeEEEecC----CeEEEeeccCCCCCccCCCCeeEEEEEec
Confidence 468999999999999999999999999875421 12233322 34444433222111122346789999997
Q ss_pred --CHHHHHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEEEEEecc
Q 020803 268 --DVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDNV 314 (321)
Q Consensus 268 --dl~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~ 314 (321)
|+++++++++++|+++..+|...+++ ++.+||+|||||.|||.+..
T Consensus 73 ~~dv~~~~~~l~~~G~~i~~~~~~~~~~-~~~~~~~DPdGn~iEl~~~~ 120 (139)
T PRK04101 73 EEDFDHWYQRLKENDVNILPGRERDERD-KKSIYFTDPDGHKFEFHTGT 120 (139)
T ss_pred HHHHHHHHHHHHHCCceEcCCccccCCC-ceEEEEECCCCCEEEEEeCC
Confidence 99999999999999987776655554 58999999999999998754
No 34
>cd08353 Glo_EDI_BRP_like_7 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.71 E-value=2.8e-16 Score=125.66 Aligned_cols=118 Identities=23% Similarity=0.245 Sum_probs=86.3
Q ss_pred eeceEEEEEeCCh----hhhhhccCCEEEEEEeCCC-----------CceEEEEeeeCCCCcceEEEEEeecCCC-----
Q 020803 62 FFPLIVVFPAGDG----RFYTECLGMKLLRKRDIPE-----------EKYTNAFLGYGPEDSHFVIELTYNYGVD----- 121 (321)
Q Consensus 62 ~~i~Hv~l~V~D~----~FY~~vLG~~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~l~l~~~~~~~----- 121 (321)
.+++||+|.|+|+ +||++ |||++..+...++ ....++++.... ....++|.....+.
T Consensus 2 ~~i~Hi~i~v~Dl~~s~~FY~~-LG~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~--g~~~iel~~~~~~~~~~~~ 78 (142)
T cd08353 2 SRMDNVGIVVRDLEAAIAFFLE-LGLELEGRAEIEGEWADRVTGLDGVRVEIAMLRTPD--GHSRLELSKFHHPAVIADH 78 (142)
T ss_pred ceeeeEEEEeCCHHHHHHHHHH-cCCEEccccccChHHHHHhcCCCCceEEEEEEeCCC--CCceEEEEEecCCCCcCcC
Confidence 4799999999999 99998 9999876543221 223455555322 24457776532211
Q ss_pred --CcCCCCCceEEEEEeCCHHHHHHHHHHcCCeeeeCCcccCCCCeEEEEEECCCCcEEEEEec
Q 020803 122 --KYDIGTGFGHFGIAVDDVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLER 183 (321)
Q Consensus 122 --~~~~~~g~~hl~f~v~dl~~~~~~l~~~Gv~i~~~p~~~~~g~~~~~~~~DPdG~~iel~~~ 183 (321)
....+.|+.|+||.|+|+++++++|+++|+++..++...+ .+.+.+|++||||+.|||+|.
T Consensus 79 ~~~~~~~~g~~hia~~v~d~d~~~~~l~~~G~~~~~~~~~~~-~~~r~~~~~DPdG~~iEl~e~ 141 (142)
T cd08353 79 RPAPVNALGLRRVMFAVDDIDARVARLRKHGAELVGEVVQYE-NSYRLCYIRGPEGILIELAEQ 141 (142)
T ss_pred CCCCCCCCCceEEEEEeCCHHHHHHHHHHCCCceeCCceecC-CCeEEEEEECCCCCEEEeeec
Confidence 1123458999999999999999999999999987654443 356789999999999999984
No 35
>cd07256 HPCD_C_class_II C-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD), which catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate; belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the C-terminal, catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of
Probab=99.71 E-value=3.3e-16 Score=128.21 Aligned_cols=120 Identities=20% Similarity=0.230 Sum_probs=82.5
Q ss_pred CCCceEEEEEeCChhHHHHHHHHhcCCeeecccCCCCCceEEEEeccCCCCcceEEEeeeccCCCccCCCCCeeEEEEEe
Q 020803 187 PEPLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGT 266 (321)
Q Consensus 187 ~~~l~hi~l~v~D~e~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~~~hi~f~v 266 (321)
|.+|+|++|.|+|+++|++||+++|||++......+.+.....++.... ....+.+.. ..++++.|++|.|
T Consensus 1 ~~~l~Hv~l~V~Dl~~s~~FY~~vLGl~~~~~~~~~~~~~~~~~l~~~~--~~~~i~l~~-------~~~~~~~Hiaf~v 71 (161)
T cd07256 1 PQRLDHFNLRVPDVDAGLAYYRDELGFRVSEYTEDDDGTTWAAWLHRKG--GVHDTALTG-------GNGPRLHHVAFWV 71 (161)
T ss_pred CceEEEEEEecCCHHHHHHHHHhccCCEEEEEeccCCCcEEEEEEecCC--CcceEEEec-------CCCCceeEEEEEc
Confidence 4679999999999999999999999999865433222222233343221 133343332 1245789999999
Q ss_pred CC---HHHHHHHHHHCCCee--ecCCccCCCCCceEEEEECCCCCEEEEEeccc
Q 020803 267 DD---VYKTAEAIKLFGGKV--TREPGPLPGINTKITACLDPDGWKTVFVDNVD 315 (321)
Q Consensus 267 ~d---l~~~~~~l~~~G~~~--~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~~ 315 (321)
+| +++++++|+++|+.. ..+|........+.+|++|||||.||+++...
T Consensus 72 ~~~~~v~~~~~~L~~~G~~~~~~~~p~~~g~~~~~~~y~~DPdG~~iEl~~~~~ 125 (161)
T cd07256 72 PEPHNIIRTCDLLAAAGYSDRIERGPGRHGISNAFFLYLRDPDGHRIEIYTGDY 125 (161)
T ss_pred CCHHHHHHHHHHHHHcCCCcccccCCCccCCCCceEEEEECCCCCeEEEeecCc
Confidence 75 788889999999863 33443333222467899999999999986543
No 36
>cd08358 Glo_EDI_BRP_like_21 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.71 E-value=4.5e-16 Score=121.27 Aligned_cols=110 Identities=42% Similarity=0.825 Sum_probs=84.7
Q ss_pred eceEEEEEeCCh----hhhhhccCCEEEEEEeCCC-----------CceEEEEeeeCCCCcceEEEEEeecCCCCcCCCC
Q 020803 63 FPLIVVFPAGDG----RFYTECLGMKLLRKRDIPE-----------EKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGT 127 (321)
Q Consensus 63 ~i~Hv~l~V~D~----~FY~~vLG~~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~~~ 127 (321)
++.|++|.|+|+ +||+++|||++..+...++ +.+..+++.++++..+..++|..+++..++..+.
T Consensus 2 ~~~Hv~irV~DlerSi~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~lEL~~n~~~~~~~~g~ 81 (127)
T cd08358 2 RALHFVFKVGNRNKTIKFYREVLGMKVLRHEEFEEGCKAACNGPYDGKWSKTMIGYGPEDDHFVVELTYNYGIGDYELGN 81 (127)
T ss_pred ceEEEEEEeCCHHHHHHHHHHhcCCEEEeeecCccccccccccCCCCcEEEEEEecCCCCCccEEEeEecCCCCCCCCCC
Confidence 689999999999 9999999999988765554 4445566765444556789998877655555555
Q ss_pred CceEEEEEeCCHHHHHHHHHHcCCeeeeCCcccCCCCeEEEEEECCCCcEEEEEe
Q 020803 128 GFGHFGIAVDDVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLE 182 (321)
Q Consensus 128 g~~hl~f~v~dl~~~~~~l~~~Gv~i~~~p~~~~~g~~~~~~~~DPdG~~iel~~ 182 (321)
+ |++|.|++. ++.++|+++|+++...|. + ++|++||||+.|||+.
T Consensus 82 ~--~~hlav~~~-d~~~~l~~~Gv~~~~~~~----~---~~fi~DPDG~~ie~~~ 126 (127)
T cd08358 82 D--FLGITIHSK-QAVSNAKKHNWPVTEVED----G---VYEVKAPGGYKFYLID 126 (127)
T ss_pred C--EEEEEEECH-HHHHHHHHCCCceecCCC----C---EEEEECCCCCEEEEec
Confidence 5 566666666 556999999999876543 1 7899999999999984
No 37
>cd07237 BphC1-RGP6_C_like C-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the C-terminal, catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its C-terminal repeat is represented in thi
Probab=99.71 E-value=2.8e-16 Score=127.61 Aligned_cols=122 Identities=14% Similarity=0.170 Sum_probs=88.8
Q ss_pred CCCCceEEEEEeCChhHHHHHHHHhcCCeeecccCCC---CCceEEEEeccCCCCcceEEEeeeccCCCccCCCCCeeEE
Q 020803 186 TPEPLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNP---EYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQI 262 (321)
Q Consensus 186 ~~~~l~hi~l~v~D~e~a~~FY~~vLG~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~~~hi 262 (321)
.+.+|+||+|.|+|++++++||+++|||++....... +......++..+. .+..+.+... ....++.|+
T Consensus 6 ~~~~l~Hi~l~v~Dl~~a~~FY~~~LGl~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~i~~~~~------~~~~g~~Hi 77 (154)
T cd07237 6 GDQGLGHVVLATPDPDEAHAFYRDVLGFRLSDEIDIPLPPGPTARVTFLHCNG--RHHSLALAEG------PGPKRIHHL 77 (154)
T ss_pred CCCccCEEEEEeCCHHHHHHHHHHccCCEEEEEEcccCCCCCcceEEEEEeCC--CCCCEEEEcC------CCCceeEEE
Confidence 4578999999999999999999999999986543221 1123344444322 2334444321 123578999
Q ss_pred EEEeCCHH---HHHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEEEEEeccc
Q 020803 263 AIGTDDVY---KTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDNVD 315 (321)
Q Consensus 263 ~f~v~dl~---~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~~ 315 (321)
+|.|+|++ +++++|+++|+++..+|...+.+..+.+|++|||||.|||+....
T Consensus 78 af~V~d~~~l~~~~~~L~~~G~~v~~~~~~~~~~~~~~~y~~DPdG~~iEl~~~~~ 133 (154)
T cd07237 78 MLEVTSLDDVGRAYDRVRARGIPIAMTLGRHTNDRMLSFYVRTPSGFAIEYGWGGR 133 (154)
T ss_pred EEEcCCHHHHHHHHHHHHHcCCceeccCCccCCCCcEEEEEECCCCcEEEeccCce
Confidence 99998654 689999999999987776666544588999999999999987643
No 38
>cd09011 Glo_EDI_BRP_like_23 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.71 E-value=2.2e-16 Score=122.64 Aligned_cols=113 Identities=15% Similarity=0.239 Sum_probs=80.5
Q ss_pred CceEEEEEeCChhHHHHHHHHhcCCeeecccCCCCCceEEEEeccCCCCcceEEEeee----ccCCCccCCCCCeeEEEE
Q 020803 189 PLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTY----NYGVTDYDKGNAYAQIAI 264 (321)
Q Consensus 189 ~l~hi~l~v~D~e~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~----~~~~~~~~~~~~~~hi~f 264 (321)
++.|+.|.|+|+++|++||+++||+++..... .. ..+ .. ...+.+.. .........+.+..|++|
T Consensus 2 ~~~~~~l~v~D~~~a~~FY~~~lG~~~~~~~~----~~-~~~-~~-----~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 70 (120)
T cd09011 2 KFKNPLLVVKDIEKSKKFYEKVLGLKVVMDFG----EN-VTF-EG-----GFALQEGYSWLEGISKADIIEKSNNFELYF 70 (120)
T ss_pred EEEEEEEEECCHHHHHHHHHHhcCCEEeeccC----ce-EEE-ec-----cceeccchhhhccCCcccccccCCceEEEE
Confidence 57899999999999999999999999864321 11 111 11 11111110 000111223345679999
Q ss_pred EeCCHHHHHHHHHHCCC-eeecCCccCCCCCceEEEEECCCCCEEEEEec
Q 020803 265 GTDDVYKTAEAIKLFGG-KVTREPGPLPGINTKITACLDPDGWKTVFVDN 313 (321)
Q Consensus 265 ~v~dl~~~~~~l~~~G~-~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~~ 313 (321)
.|+|+++++++|+++|+ ++..+|...+++ .+.++|+|||||.|||.+.
T Consensus 71 ~v~dvd~~~~~l~~~g~~~~~~~~~~~~~g-~r~~~~~DPdGn~iei~~~ 119 (120)
T cd09011 71 EEEDFDAFLDKLKRYDNIEYVHPIKEHPWG-QRVVRFYDPDKHIIEVGES 119 (120)
T ss_pred EehhhHHHHHHHHhcCCcEEecCcccCCCc-cEEEEEECCCCCEEEEecc
Confidence 99999999999999986 788888887876 4899999999999999874
No 39
>cd08363 FosB FosB, a fosfomycin resistance protein, catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin. This subfamily family contains FosB, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosB catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin, (1R,2S)-epoxypropylphosphonic acid, rendering it inactive. FosB is evolutionarily related to glyoxalase I and type I extradiol dioxygenases
Probab=99.71 E-value=2.4e-16 Score=124.45 Aligned_cols=114 Identities=22% Similarity=0.263 Sum_probs=82.3
Q ss_pred ceEEEEEeCChhHHHHHHHHhcCCeeecccCCCCCceEEEEeccCCCCcceEEEeeeccCCCccCCCCCeeEEEEEeC--
Q 020803 190 LCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGTD-- 267 (321)
Q Consensus 190 l~hi~l~v~D~e~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~~~hi~f~v~-- 267 (321)
|+||.|.|+|++++++||+++|||++..... ... ++..+ +..+.+.............++.|++|.|+
T Consensus 1 i~HV~l~V~Dl~~a~~FY~~~LG~~~~~~~~----~~~--~~~~~----~~~l~l~~~~~~~~~~~~~~~~hiaf~v~~~ 70 (131)
T cd08363 1 INHMTFSVSNLDKSISFYKHVFMEKLLVLGE----KTA--YFTIG----GTWLALNEEPDIPRNEIRQSYTHIAFTIEDS 70 (131)
T ss_pred CceEEEEECCHHHHHHHHHHhhCCEEeccCC----ccc--eEeeC----ceEEEEEccCCCCcCCcCccceEEEEEecHH
Confidence 6899999999999999999999999864321 111 22221 34455543222111122346789999997
Q ss_pred CHHHHHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEEEEEecc
Q 020803 268 DVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDNV 314 (321)
Q Consensus 268 dl~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~ 314 (321)
|+++++++++++|+++..+|....++ ++.+||+|||||+|||.+..
T Consensus 71 dld~~~~~l~~~G~~~~~~~~~~~~~-~~~~~f~DPdG~~iEl~~~~ 116 (131)
T cd08363 71 EFDAFYTRLKEAGVNILPGRKRDVRD-RKSIYFTDPDGHKLEVHTGT 116 (131)
T ss_pred HHHHHHHHHHHcCCcccCCCccccCc-ceEEEEECCCCCEEEEecCc
Confidence 49999999999999987555443333 58999999999999999875
No 40
>cd07258 PpCmtC_C C-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the C-terminal, catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as for other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.70 E-value=3.6e-16 Score=124.94 Aligned_cols=115 Identities=18% Similarity=0.259 Sum_probs=85.1
Q ss_pred eEEEEEeCChhHHHHHHHHhcCCeeecccCCCCCceEEEEeccCCCCcceEEEeeeccCCCccCCCCCeeEEEEEeCC--
Q 020803 191 CQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGTDD-- 268 (321)
Q Consensus 191 ~hi~l~v~D~e~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~~~hi~f~v~d-- 268 (321)
.||.|.|+|++++.+||+++|||++..+... ..+++.......+..+.+.. ....+++|++|.|+|
T Consensus 1 ~Hv~l~V~Dle~s~~Fy~~vLG~~~~~~~~~-----~~~~l~~~~~~~~h~~~~~~-------~~~~gl~Hiaf~v~~~~ 68 (141)
T cd07258 1 GHVVIGSENFEASRDSLVEDFGFRVSDLIED-----RIVFMRCHPNPFHHTFAVGP-------ASSSHFHHVNFMVTDID 68 (141)
T ss_pred CcEEEecCCHHHHHHHHHhcCCCEeeeeeCC-----EEEEEEcCCCCCcceeeecc-------CCCCceEEEEEECCCHH
Confidence 5899999999999999999999998765321 23445433222233333221 134589999999976
Q ss_pred -HHHHHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEEEEEeccccc
Q 020803 269 -VYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDNVDFL 317 (321)
Q Consensus 269 -l~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~~~~ 317 (321)
++++.++|+++|+++..+|...+.+.++.+||+||||+.|||....+..
T Consensus 69 ~v~~~~~~l~~~G~~~~~~p~~~~~~~~~~~y~~DPdG~~iE~~~~~~~~ 118 (141)
T cd07258 69 DIGKALYRIKAHDVKVVFGPGRHPPSDSIFFYFLDPDGITVEYSFGMEEF 118 (141)
T ss_pred HHHHHHHHHHHCCCcEEeCCceECCCCCEEEEEECCCCCEEEEEeCccee
Confidence 5677999999999998888776655568899999999999998765443
No 41
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.70 E-value=6.8e-16 Score=120.06 Aligned_cols=117 Identities=20% Similarity=0.308 Sum_probs=84.7
Q ss_pred CCceEEEEEeCChhHHHHHHHHhcCCeeecccCCCCCceEEEEeccCCCCcceEEEeeeccCC---CccCCCCCeeEEEE
Q 020803 188 EPLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGV---TDYDKGNAYAQIAI 264 (321)
Q Consensus 188 ~~l~hi~l~v~D~e~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~---~~~~~~~~~~hi~f 264 (321)
.+++|+.|.|+|++++++||+++|||+........ .+..+..+ ...+++...... .......+..|++|
T Consensus 2 ~~l~hi~l~v~d~~~s~~Fy~~~lG~~~~~~~~~~--~~~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~~~hi~~ 73 (125)
T cd07253 2 KRIDHVVLTVADIEATLDFYTRVLGMEVVRFGEEV--GRKALRFG------SQKINLHPVGGEFEPAAGSPGPGSDDLCL 73 (125)
T ss_pred cccceEEEEecCHHHHHHHHHHHhCceeecccccC--CceEEEeC------CEEEEEecCCCccCcCccCCCCCCceEEE
Confidence 36899999999999999999999999987654321 22222222 244555432221 11123457889999
Q ss_pred EeCC-HHHHHHHHHHCCCeeecCCccCCC--CCceEEEEECCCCCEEEEEe
Q 020803 265 GTDD-VYKTAEAIKLFGGKVTREPGPLPG--INTKITACLDPDGWKTVFVD 312 (321)
Q Consensus 265 ~v~d-l~~~~~~l~~~G~~~~~~p~~~~~--~~~~~~~~~DPdG~~iel~~ 312 (321)
.+++ +++++++++++|+++..+|...++ +.++.+||+|||||.||+.+
T Consensus 74 ~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~DPdG~~ve~~~ 124 (125)
T cd07253 74 ITEPPIDELVAHLEAHGVPIEEGPVPRTGARGPITSVYFRDPDGNLIELSN 124 (125)
T ss_pred EecccHHHHHHHHHHCCceeecCcccccCCCCCccEEEEECCCCCEEEeee
Confidence 9975 999999999999999877755432 22478999999999999976
No 42
>cd07243 2_3_CTD_C C-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the C-terminal, catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the C-terminal domain.
Probab=99.70 E-value=7e-16 Score=123.67 Aligned_cols=114 Identities=16% Similarity=0.189 Sum_probs=83.6
Q ss_pred eeeceEEEEEeCCh----hhhhhccCCEEEEEEeCCCCc-eEEEEeeeCCCCcceEEEEEeecCCCCcCCCCCceEEEEE
Q 020803 61 SFFPLIVVFPAGDG----RFYTECLGMKLLRKRDIPEEK-YTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIA 135 (321)
Q Consensus 61 ~~~i~Hv~l~V~D~----~FY~~vLG~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hl~f~ 135 (321)
..+|+||+|.|+|+ +||+++|||++..+...+++. ...+|+..+. . ...+.+.. ..+.+++|+||.
T Consensus 4 ~~~l~Hv~l~v~Dle~s~~FY~~vLGf~~~~~~~~~~~~~~~~~~l~~~~-~-~h~~~~~~-------~~~~~~~Hiaf~ 74 (143)
T cd07243 4 AHRLDHCLLTGEDIAETTRFFTDVLDFYLAERVVDPDGGTRVGSFLSCSN-K-PHDIAFVG-------GPDGKLHHFSFF 74 (143)
T ss_pred CceeCEEEEecCCHHHHHHHHHHhcCCEEEEEEecCCCCeEEEEEEecCC-C-cceEEEec-------CCCCCceEEEEE
Confidence 56899999999999 999999999987765433332 2345665432 2 22333322 113578999999
Q ss_pred eCCHHH---HHHHHHHcCCeeeeCCcccCCCCeEEEEEECCCCcEEEEEec
Q 020803 136 VDDVAK---TVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLER 183 (321)
Q Consensus 136 v~dl~~---~~~~l~~~Gv~i~~~p~~~~~g~~~~~~~~DPdG~~iel~~~ 183 (321)
|+|+++ +.++|+++|+++..+|..+..+.++.+||.|||||.|||+..
T Consensus 75 v~d~~~l~~~~~~l~~~Gv~i~~~p~~~~~~~~~~~yf~DPdG~~iEl~~~ 125 (143)
T cd07243 75 LESWEDVLKAGDIISMNDVSIDIGPTRHGITRGQTIYFFDPSGNRNETFAG 125 (143)
T ss_pred cCCHHHHHHHHHHHHHcCCceEECCcCCCCCCceEEEEECCCCCEEEEecC
Confidence 999777 678999999998877755443345779999999999999864
No 43
>cd08342 HPPD_N_like N-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HPPD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of HPP to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two, instead of three, su
Probab=99.70 E-value=9.2e-16 Score=121.95 Aligned_cols=116 Identities=22% Similarity=0.230 Sum_probs=87.5
Q ss_pred ceEEEEEeCCh----hhhhhccCCEEEEEEeCCCCceEEEEeeeCCCCcceEEEEEeecCCCC------cCCCCCceEEE
Q 020803 64 PLIVVFPAGDG----RFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDK------YDIGTGFGHFG 133 (321)
Q Consensus 64 i~Hv~l~V~D~----~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~------~~~~~g~~hl~ 133 (321)
++|++|.|+|+ +||+++|||++..+...+ ....+++..+ ...+.+........ ...+.++.|++
T Consensus 1 ~~Hi~i~V~D~e~s~~FY~~vLGf~~~~~~~~~--~~~~~~~~~g----~~~l~l~~~~~~~~~~~~~~~~~~~g~~hia 74 (136)
T cd08342 1 FDHVEFYVGNAKQLASWFSTKLGFEPVAYHGSE--DKASYLLRQG----DINFVLNSPLNSFAPVADFLEKHGDGVCDVA 74 (136)
T ss_pred CeEEEEEeCCHHHHHHHHHHhcCCeEEEecCCC--ceEEEEEEcC----CEEEEEecCCCCCCchHHHHHhcCCceEEEE
Confidence 68999999999 999999999998764332 1234444422 33455543222111 12456889999
Q ss_pred EEeCCHHHHHHHHHHcCCeeeeCCcccCCCCeEEEEEECCCCcEEEEEecCCC
Q 020803 134 IAVDDVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGPT 186 (321)
Q Consensus 134 f~v~dl~~~~~~l~~~Gv~i~~~p~~~~~g~~~~~~~~DPdG~~iel~~~~~~ 186 (321)
|.|+|+++++++|+++|+++..+|...+ ++.+.++++||||+.|||+++...
T Consensus 75 ~~V~Dvda~~~~l~~~G~~v~~~p~~~~-~~~~~~~i~dp~G~~ie~~~~~~~ 126 (136)
T cd08342 75 FRVDDAAAAYERAVARGAKPVQEPVEEP-GELKIAAIKGYGDSLHTLVDRKGY 126 (136)
T ss_pred EEeCCHHHHHHHHHHcCCeEccCceecC-CeEEEEEEeccCCcEEEEEecCCC
Confidence 9999999999999999999998887644 467889999999999999997654
No 44
>PRK11478 putative lyase; Provisional
Probab=99.70 E-value=4.9e-16 Score=122.04 Aligned_cols=117 Identities=23% Similarity=0.261 Sum_probs=80.9
Q ss_pred eeeceEEEEEeCCh----hhhhhccCCEEEEEEeCCC-CceEEEEeeeCCCCcceEEEEEeecCC---CCcCCCCCceEE
Q 020803 61 SFFPLIVVFPAGDG----RFYTECLGMKLLRKRDIPE-EKYTNAFLGYGPEDSHFVIELTYNYGV---DKYDIGTGFGHF 132 (321)
Q Consensus 61 ~~~i~Hv~l~V~D~----~FY~~vLG~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~l~l~~~~~~---~~~~~~~g~~hl 132 (321)
..+++||+|.|+|+ +||+++|||++..+...++ ..+. ..+..+. ...+++.....+ .......|+.|+
T Consensus 4 i~~i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~-~~~~~~~---~~~l~l~~~~~~~~~~~~~~~~g~~hi 79 (129)
T PRK11478 4 LKQVHHIAIIATDYAVSKAFYCDILGFTLQSEVYREARDSWK-GDLALNG---QYVIELFSFPFPPERPSRPEACGLRHL 79 (129)
T ss_pred cceecEEEEEcCCHHHHHHHHHHHhCCEecccccccccccce-eeEecCC---CcEEEEEEecCCCCCCCCCCCCceeEE
Confidence 56799999999999 9999999999865422222 1121 1222221 345665542211 111234578999
Q ss_pred EEEeCCHHHHHHHHHHcCCeeeeCCcccCCCCeEEEEEECCCCcEEEEEe
Q 020803 133 GIAVDDVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLE 182 (321)
Q Consensus 133 ~f~v~dl~~~~~~l~~~Gv~i~~~p~~~~~g~~~~~~~~DPdG~~iel~~ 182 (321)
+|.|+|+++++++|+++|+++...+.... .+.+++||.||+||.|||++
T Consensus 80 ~f~v~d~~~~~~~l~~~G~~~~~~~~~~~-~g~~~~~~~DPdG~~iEl~~ 128 (129)
T PRK11478 80 AFSVDDIDAAVAHLESHNVKCEAIRVDPY-TQKRFTFFNDPDGLPLELYE 128 (129)
T ss_pred EEEeCCHHHHHHHHHHcCCeeeccccCCC-CCCEEEEEECCCCCEEEEEe
Confidence 99999999999999999999864432222 24578999999999999987
No 45
>cd08355 Glo_EDI_BRP_like_14 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.69 E-value=1.4e-15 Score=118.39 Aligned_cols=115 Identities=21% Similarity=0.204 Sum_probs=83.1
Q ss_pred EEEEeCChhHHHHHHHHhcCCeeecccCCCCCceEEEEeccCCCCcceEEEeeeccCCCc----cCCCCCeeEEEEEeCC
Q 020803 193 VMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTD----YDKGNAYAQIAIGTDD 268 (321)
Q Consensus 193 i~l~v~D~e~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~----~~~~~~~~hi~f~v~d 268 (321)
..|.|+|+++|++||+++||+++......+++......+..+ ...+.+........ ....++..|++|.|+|
T Consensus 3 p~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~d 78 (122)
T cd08355 3 PTLRYRDAAAAIDWLTDAFGFEERLVVPDDDGGVAHAELRFG----DGGVMVGSVRDDYRASSARAGGAGTQGVYVVVDD 78 (122)
T ss_pred EEEEECCHHHHHHHHHHhcCCEEEEEEeCCCCcEEEEEEEEC----CEEEEEecCCCcccccccccCCCceEEEEEEECC
Confidence 468999999999999999999998655333333323333322 22333332221111 1233466799999999
Q ss_pred HHHHHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEEEEEe
Q 020803 269 VYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVD 312 (321)
Q Consensus 269 l~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~ 312 (321)
+++++++++++|+++..+|...+++ .+.++++|||||.|+|.+
T Consensus 79 ~d~~~~~l~~~G~~v~~~~~~~~~g-~~~~~~~DPdG~~~~l~~ 121 (122)
T cd08355 79 VDAHYERARAAGAEILREPTDTPYG-SREFTARDPEGNLWTFGT 121 (122)
T ss_pred HHHHHHHHHHCCCEEeeCccccCCC-cEEEEEECCCCCEEEEec
Confidence 9999999999999999888887776 488999999999999964
No 46
>cd07264 Glo_EDI_BRP_like_15 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.69 E-value=9.9e-16 Score=119.50 Aligned_cols=115 Identities=23% Similarity=0.293 Sum_probs=81.0
Q ss_pred ceEEEEEeCChhHHHHHHHHhcCCeeecccCCCCCceEEEEeccCCCCcceEEEeeecc--------CC--CccCCCCCe
Q 020803 190 LCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNY--------GV--TDYDKGNAY 259 (321)
Q Consensus 190 l~hi~l~v~D~e~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~--------~~--~~~~~~~~~ 259 (321)
+.|+.|.|+|++++++||+++|||++..... ...+... ..+ ...+.+.... .. ......++.
T Consensus 1 ~~~~~l~v~D~~~s~~FY~~~lG~~~~~~~~--~~~~~~~--~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (125)
T cd07264 1 FGYTIIYVEDVEKTLEFYERAFGFERRFLHE--SGDYGEL--ETG----ETTLAFASHDLAESNLKGGFVKADPAQPPAG 72 (125)
T ss_pred CceEEEEEcCHHHHHHHHHHhhCCeEEeecC--CCcEEEe--cCC----cEEEEEEcccccccccccCccCCccccCCCc
Confidence 5799999999999999999999999864322 1122221 111 1222221100 00 011122345
Q ss_pred eEEEEEeCCHHHHHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEEEEEec
Q 020803 260 AQIAIGTDDVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDN 313 (321)
Q Consensus 260 ~hi~f~v~dl~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~~ 313 (321)
.|++|.|+|+++++++++++|+++..+|...+++ .+.++++|||||.||++++
T Consensus 73 ~~~~~~v~di~~~~~~l~~~G~~~~~~~~~~~~g-~~~~~~~DPdG~~~~~~~~ 125 (125)
T cd07264 73 FEIAFVTDDVAAAFARAVEAGAVLVSEPKEKPWG-QTVAYVRDINGFLIELCSP 125 (125)
T ss_pred EEEEEEcCCHHHHHHHHHHcCCEeccCCccCCCC-cEEEEEECCCCCEEEEecC
Confidence 6999999999999999999999998888777776 3789999999999999874
No 47
>cd07263 Glo_EDI_BRP_like_16 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.69 E-value=6.3e-16 Score=119.06 Aligned_cols=117 Identities=23% Similarity=0.289 Sum_probs=84.6
Q ss_pred EEEEEeCChhHHHHHHHHhcCCeeecccCCCCCceEEEEeccCCCCcceEEEeeeccCCCc--cCCCCCeeEEEEEeCCH
Q 020803 192 QVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTD--YDKGNAYAQIAIGTDDV 269 (321)
Q Consensus 192 hi~l~v~D~e~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~--~~~~~~~~hi~f~v~dl 269 (321)
|+.|.|+|++++++||+++|||++........ ....+.+..... ....+.+........ .....+..|++|.|+|+
T Consensus 1 Hv~l~v~d~~~~~~fY~~~lG~~~~~~~~~~~-~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~di 78 (119)
T cd07263 1 LVSLYVDDQDKALAFYTEKLGFEVREDVPMGG-GFRWVTVAPPGS-PETSLVLAPPANPAAMSGLQPGGTPGLVLATDDI 78 (119)
T ss_pred CceEEeCCHHHHHHHHHhccCeEEEEeeccCC-CcEEEEEeCCCC-CeeEEEEeCCCCccccccccCCCceEEEEEehHH
Confidence 89999999999999999999999986643222 223343432211 134555543322211 12345678999999999
Q ss_pred HHHHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEEEEEe
Q 020803 270 YKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVD 312 (321)
Q Consensus 270 ~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~ 312 (321)
++++++++++|+++..+|...++ ++.+|++|||||.|||++
T Consensus 79 ~~~~~~l~~~g~~~~~~~~~~~~--~~~~~~~DP~G~~ie~~~ 119 (119)
T cd07263 79 DATYEELKARGVEFSEEPREMPY--GTVAVFRDPDGNLFVLVQ 119 (119)
T ss_pred HHHHHHHHhCCCEEeeccccCCC--ceEEEEECCCCCEEEEeC
Confidence 99999999999999887744443 589999999999999975
No 48
>cd07257 THT_oxygenase_C The C-terminal domain of 2,4,5-Trihydroxytoluene (THT) oxygenase, which is an extradiol dioxygenease in the 2,4-dinitrotoluene (DNT) degradation pathway. This subfamily contains the C-terminal, catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=99.69 E-value=2.7e-16 Score=127.56 Aligned_cols=115 Identities=23% Similarity=0.293 Sum_probs=84.7
Q ss_pred eceEEEEEeCCh----hhhhhccCCEEEEEEeCC-CCceEEEEeeeCCCCc---ceEEEEEeecCCCCcCCCCCceEEEE
Q 020803 63 FPLIVVFPAGDG----RFYTECLGMKLLRKRDIP-EEKYTNAFLGYGPEDS---HFVIELTYNYGVDKYDIGTGFGHFGI 134 (321)
Q Consensus 63 ~i~Hv~l~V~D~----~FY~~vLG~~~~~~~~~~-~~~~~~~~l~~~~~~~---~~~l~l~~~~~~~~~~~~~g~~hl~f 134 (321)
+|+||+|.|+|+ +||+++||+++......+ .+....+|+.++++.. ...+.+.. ..+.|++|+||
T Consensus 1 ri~Hv~l~V~Dle~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~-------~~~~g~~Hiaf 73 (153)
T cd07257 1 RLGHVVLEVPDFAASFDWYTETFGLKPSDVIYLPGPGNPVAAFLRLDRGEEYVDHHTLALAQ-------GPESGVHHAAF 73 (153)
T ss_pred CccEEEEecCCHHHHHHHHHHhcCCeEEeeEecCCCCCcEEEEEecCCCCCcccchHHHHhc-------CCCCceeEEEE
Confidence 589999999999 999999999987664433 2334567776643210 00111111 12468999999
Q ss_pred EeCCHHHHH---HHHHHcCCeeeeCCcccCCCCeEEEEEECCCCcEEEEEecC
Q 020803 135 AVDDVAKTV---ELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERG 184 (321)
Q Consensus 135 ~v~dl~~~~---~~l~~~Gv~i~~~p~~~~~g~~~~~~~~DPdG~~iel~~~~ 184 (321)
.|+|++++. ++|+++|+++...+.....+...++|+.||+||.|||+...
T Consensus 74 ~v~die~~~~~~~~L~~~Gv~v~~~~g~~~~g~~~~~y~~DPdG~~iEl~~~~ 126 (153)
T cd07257 74 EVHDFDAQGLGHDYLREKGYEHVWGVGRHILGSQIFDYWFDPWGFIVEHYTDG 126 (153)
T ss_pred EcCCHHHHHHHHHHHHHCCCcEeecCCccCCCCCEEEEEECCCCCEEEEEcCc
Confidence 999999976 99999999998777665544556789999999999999654
No 49
>cd08347 PcpA_C_like C-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The C-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.69 E-value=1e-15 Score=124.55 Aligned_cols=117 Identities=15% Similarity=0.101 Sum_probs=84.4
Q ss_pred CceEEEEEeCChhHHHHHHHHhcCCeeecccCCCCCceEEEEeccCCCCcceEEEeeeccCCCc-cCCCCCeeEEEEEeC
Q 020803 189 PLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTD-YDKGNAYAQIAIGTD 267 (321)
Q Consensus 189 ~l~hi~l~v~D~e~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~-~~~~~~~~hi~f~v~ 267 (321)
+++||+|.|+|+++|.+||+++|||++..+.. . ...+...+. ..+..+.+........ .....++.|++|.|+
T Consensus 1 gl~HI~i~V~Dle~s~~FY~~~LG~~~~~~~~---~--~~~~~~~~~-~~~~~l~l~~~~~~~~~~~~~~~l~Hiaf~v~ 74 (157)
T cd08347 1 GLHGVTLTVRDPEATAAFLTDVLGFREVGEEG---D--RVRLEEGGG-GPGAVVDVLEEPDQPRGRPGAGTVHHVAFRVP 74 (157)
T ss_pred CcccEEEEeCCHHHHHHHHHHhcCCEEEeeeC---C--EEEEEecCC-CCCCEEEEEeCCCCCCCcccCCceEEEEEECC
Confidence 47999999999999999999999999876543 1 222222211 1256677765422211 122346889999999
Q ss_pred C---HHHHHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEEEEEecc
Q 020803 268 D---VYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDNV 314 (321)
Q Consensus 268 d---l~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~ 314 (321)
| +++++++|+++|+++. ++...++ ++++||+|||||.|||++..
T Consensus 75 d~~dvd~~~~~L~~~Gv~~~-~~~~~~~--~~s~yf~DPdG~~iEl~~~~ 121 (157)
T cd08347 75 DDEELEAWKERLEALGLPVS-GIVDRFY--FKSLYFREPGGILFEIATDG 121 (157)
T ss_pred CHHHHHHHHHHHHHCCCCcc-ccccccc--EEEEEEECCCCcEEEEEECC
Confidence 8 9999999999999854 3333332 47899999999999999865
No 50
>cd07245 Glo_EDI_BRP_like_9 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases.
Probab=99.69 E-value=7.3e-16 Score=117.49 Aligned_cols=113 Identities=25% Similarity=0.190 Sum_probs=81.6
Q ss_pred ceEEEEEeCChhHHHHHHHHhcCCeeecccCCCCCceEEEEeccCCCCcceEEEeeeccCCCc-cCCCCCeeEEEEEeCC
Q 020803 190 LCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTD-YDKGNAYAQIAIGTDD 268 (321)
Q Consensus 190 l~hi~l~v~D~e~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~-~~~~~~~~hi~f~v~d 268 (321)
|+|++|.|+|++++++||+++||+++..+..... ...++..++ ...+++........ ...+.+..|++|.|+|
T Consensus 1 i~Hi~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~---~~~~~~~~~---~~~i~l~~~~~~~~~~~~~~~~~~~~~~v~d 74 (114)
T cd07245 1 LDHVALRVPDLEASRAFYTDVLGLEEGPRPPFLF---PGAWLYAGD---GPQLHLIEEDPPDALPEGPGRDDHIAFRVDD 74 (114)
T ss_pred CCeEEEecCCHHHHHHHHHHccCCcccCcCCCCC---CceEEEeCC---CcEEEEEecCCCccccCCCcccceEEEEeCC
Confidence 6899999999999999999999999875543221 112232221 23455554322211 1233467899999999
Q ss_pred HHHHHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEEEE
Q 020803 269 VYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVF 310 (321)
Q Consensus 269 l~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel 310 (321)
+++++++++++|+++..++.. ..+ ++.+++.||+||.|||
T Consensus 75 ~~~~~~~l~~~g~~~~~~~~~-~~~-~~~~~~~DP~G~~iE~ 114 (114)
T cd07245 75 LDAFRARLKAAGVPYTESDVP-GDG-VRQLFVRDPDGNRIEL 114 (114)
T ss_pred HHHHHHHHHHcCCCcccccCC-CCC-ccEEEEECCCCCEEeC
Confidence 999999999999998877654 222 4789999999999996
No 51
>cd09013 BphC-JF8_N_like N-terminal, non-catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C
Probab=99.69 E-value=7.1e-16 Score=119.91 Aligned_cols=112 Identities=20% Similarity=0.222 Sum_probs=81.0
Q ss_pred CCceEEEEEeCChhHHHHHHHHhcCCeeecccCCCCCceEEEEeccCCCCcceEEEeeeccCCCccCCCCCeeEEEEEeC
Q 020803 188 EPLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGTD 267 (321)
Q Consensus 188 ~~l~hi~l~v~D~e~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~~~hi~f~v~ 267 (321)
.+|+|++|.|+|+++|.+||+++|||++..+.. . ..++..........+.+.. ....++.|++|.|+
T Consensus 5 ~~i~hv~l~v~dl~~a~~FY~~~lG~~~~~~~~----~--~~~l~~~~~~~~~~~~l~~-------~~~~~~~h~af~v~ 71 (121)
T cd09013 5 AHLAHVELLTPKPEESLWFFTDVLGLEETGREG----Q--SVYLRAWGDYEHHSLKLTE-------SPEAGLGHIAWRAS 71 (121)
T ss_pred cEeeEEEEEeCCHHHHHHHHHhCcCCEEEeecC----C--eEEEEeccCCCccEEEEee-------CCCCceEEEEEEcC
Confidence 578999999999999999999999999876532 1 2233322111234444432 12347899999997
Q ss_pred ---CHHHHHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEEEEEecc
Q 020803 268 ---DVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDNV 314 (321)
Q Consensus 268 ---dl~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~ 314 (321)
|++++.++++++|+++...+.. ++. ++.+||+|||||.||++...
T Consensus 72 ~~~~v~~~~~~l~~~G~~~~~~~~~-~~~-~~~~~~~DPdG~~iEl~~~~ 119 (121)
T cd09013 72 SPEALERRVAALEASGLGIGWIEGD-PGH-GKAYRFRSPDGHPMELYWEV 119 (121)
T ss_pred CHHHHHHHHHHHHHcCCccccccCC-CCC-cceEEEECCCCCEEEEEEec
Confidence 6889999999999987533322 232 47899999999999998754
No 52
>cd08364 FosX FosX, a fosfomycin resistance protein, catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. This subfamily family contains FosX, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of the configuration at C1 in the presence of Mn(II). The hydrated fosfomycin loses the inhibition activity. FosX is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.69 E-value=1.2e-15 Score=120.54 Aligned_cols=116 Identities=19% Similarity=0.239 Sum_probs=81.2
Q ss_pred CCceEEEEEeCChhHHHHHHHHhcCCeeecccCCCCC--ceEEEEeccCCCCcceEEEeeeccCCCccCCCCCeeEEEEE
Q 020803 188 EPLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEY--KYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIG 265 (321)
Q Consensus 188 ~~l~hi~l~v~D~e~a~~FY~~vLG~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~~~hi~f~ 265 (321)
.+++|++|.|+|+++|++||+++|||++..+...... ....++.. + ...+++..... ....+..|++|.
T Consensus 3 ~~i~hv~l~V~dl~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~-~----~~~i~l~~~~~----~~~~~~~Hiaf~ 73 (131)
T cd08364 3 EGLSHITLIVKDLNKTTAFLQNIFNAREVYSSGDKTFSLSKEKFFLI-G----GLWIAIMEGDS----LQERTYNHIAFK 73 (131)
T ss_pred ccEeEEEEEeCCHHHHHHHHHHHhCCeeEEecccccccccceeEEEc-C----CeEEEEecCCC----CCCCCceEEEEE
Confidence 4689999999999999999999999987654321100 00111111 1 24455543211 122367899999
Q ss_pred eC--CHHHHHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEEEEEec
Q 020803 266 TD--DVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDN 313 (321)
Q Consensus 266 v~--dl~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~~ 313 (321)
|+ |++++.++|+++|+++.. +.+...+.++.+||+|||||.|||...
T Consensus 74 v~~~~ld~~~~~l~~~gv~~~~-~~~~~~~~g~~~yf~DPdG~~iEl~~~ 122 (131)
T cd08364 74 ISDSDVDEYTERIKALGVEMKP-PRPRVQGEGRSIYFYDFDNHLFELHTG 122 (131)
T ss_pred cCHHHHHHHHHHHHHCCCEEec-CCccccCCceEEEEECCCCCEEEEecC
Confidence 98 799999999999998764 333333336899999999999999865
No 53
>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.69 E-value=9.1e-16 Score=119.50 Aligned_cols=115 Identities=23% Similarity=0.307 Sum_probs=82.5
Q ss_pred eceEEEEEeCCh----hhhhhccCCEEEEEEeCCCCceEEEEeeeCCCCcceEEEEEeecCCCC---cCCCCCceEEEEE
Q 020803 63 FPLIVVFPAGDG----RFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDK---YDIGTGFGHFGIA 135 (321)
Q Consensus 63 ~i~Hv~l~V~D~----~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~---~~~~~g~~hl~f~ 135 (321)
|++||+|.|+|+ +||+++|||+...+...+..++...|+..++ +..+++........ .....|+.|+||.
T Consensus 1 ~~~Hi~l~v~dl~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~~~~~g~~hi~f~ 77 (125)
T cd07241 1 KIEHVAIWTKDLERMKAFYVTYFGATSNEKYHNPRKGFESYFLSFDD---GARLELMTRPDIAPSPNEGERTGWAHLAFS 77 (125)
T ss_pred CceEEEEEecCHHHHHHHHHHHhCCEeeceEeCCCCCceEEEEecCC---CcEEEEEcCcccCCCcccCCCCceEEEEEE
Confidence 589999999999 9999999999876544433444556666542 33466654222111 1233588999999
Q ss_pred eCC---HHHHHHHHHHcCCeeeeCCcccCCCCeEEEEEECCCCcEEEEE
Q 020803 136 VDD---VAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELL 181 (321)
Q Consensus 136 v~d---l~~~~~~l~~~Gv~i~~~p~~~~~g~~~~~~~~DPdG~~iel~ 181 (321)
|+| +++++++|+++|+++..+|...+. +.+.+++.|||||.|||.
T Consensus 78 v~~~~~v~~~~~~l~~~g~~~~~~~~~~~~-g~~~~~~~DPdG~~iE~~ 125 (125)
T cd07241 78 VGSKEAVDELTERLRADGYLIIGEPRTTGD-GYYESVILDPEGNRIEIT 125 (125)
T ss_pred CCCHHHHHHHHHHHHHCCCEEEeCceecCC-CeEEEEEECCCCCEEEeC
Confidence 964 899999999999999876654443 334577999999999983
No 54
>TIGR03645 glyox_marine lactoylglutathione lyase family protein. Members of this protein family share homology with lactoylglutathione lyase (glyoxalase I) and are found mainly in marine members of the gammaproteobacteria, including CPS_0532 from Colwellia psychrerythraea 34H. This family excludes a well-separated, more narrowly distributed paralogous family, exemplified by CPS_3492 from C. psychrerythraea. The function is of this protein family is unknown.
Probab=99.69 E-value=9.9e-16 Score=125.43 Aligned_cols=122 Identities=25% Similarity=0.229 Sum_probs=84.9
Q ss_pred eeeceEEEEEeCCh----hhhhhccCCEEEEEE----eC--------------CCCceEEEEeeeCCCCcceEEEEEeec
Q 020803 61 SFFPLIVVFPAGDG----RFYTECLGMKLLRKR----DI--------------PEEKYTNAFLGYGPEDSHFVIELTYNY 118 (321)
Q Consensus 61 ~~~i~Hv~l~V~D~----~FY~~vLG~~~~~~~----~~--------------~~~~~~~~~l~~~~~~~~~~l~l~~~~ 118 (321)
+++++||+|.|+|+ +||+++|||++..+. .. ......++++..++ +..++|....
T Consensus 2 ~~~i~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~---~~~ieL~~~~ 78 (162)
T TIGR03645 2 PRTFSHIGISVPDLDAAVKFYTEVLGWYLIMPPTEIVEDDSAIGEMCTDVFGEGWGSFKIAHLSTGD---RIGVELFEFK 78 (162)
T ss_pred CceEEEEEEEeCCHHHHHHHHHHhcCCEEEeccccccCCCCCCCchhhHHhCCCcceeeEEEEecCC---CCcEEEEecc
Confidence 45799999999999 999999999886421 10 01124566666432 3346766543
Q ss_pred CCCC-c----CCCCCceEEEEEeCCHHHHHHHHHHcCCeeeeCCcc-c-CC-CCeEEEEEECCCCcEEEEEecCC
Q 020803 119 GVDK-Y----DIGTGFGHFGIAVDDVAKTVELIKAKGGKVTREPGP-V-KG-GNTVIAFIEDPDGYKFELLERGP 185 (321)
Q Consensus 119 ~~~~-~----~~~~g~~hl~f~v~dl~~~~~~l~~~Gv~i~~~p~~-~-~~-g~~~~~~~~DPdG~~iel~~~~~ 185 (321)
.... . ..+.|+.|+||.|+|+++++++|+++|+++...+.. . ++ ...+.+|++|||||.|||++...
T Consensus 79 ~~~~~~~~~~~~~~g~~Hla~~v~dida~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~DPdG~~iEl~~~~~ 153 (162)
T TIGR03645 79 NQENPEDNFEYWKTGVFHFCVQDPDVEGLAERIVAAGGKKRMPVPRYYYPGEKPYRMIYMEDPFGNILEIYSHSY 153 (162)
T ss_pred CCCCCCcccccccccceEEEEEcCCHHHHHHHHHHcCCcccCCCccccCCCCCceEEEEEECCCCCEEEEEEcCh
Confidence 2211 1 124689999999999999999999999876443211 1 11 12368999999999999999865
No 55
>cd08343 ED_TypeI_classII_C C-terminal domain of type I, class II extradiol dioxygenases; catalytic domain. This family contains the C-terminal, catalytic domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this family are
Probab=99.68 E-value=1.6e-15 Score=119.65 Aligned_cols=115 Identities=18% Similarity=0.254 Sum_probs=85.2
Q ss_pred eEEEEEeCChhHHHHHHHHhcCCeeecccCCCCCceEEEEeccCCCCcceEEEeeeccCCCccCCCCCeeEEEEEeCCHH
Q 020803 191 CQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGTDDVY 270 (321)
Q Consensus 191 ~hi~l~v~D~e~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~~~hi~f~v~dl~ 270 (321)
+||.|.|+|+++|++||+++||+++......+ +.....++..+. .+..+.+.... ..+++.|++|.|+|++
T Consensus 1 ~Hv~l~V~dl~~a~~Fy~~~lG~~~~~~~~~~-~~~~~~~~~~~~--~~~~l~~~~~~------~~~~~~hl~~~v~d~~ 71 (131)
T cd08343 1 DHVVLRTPDVAATAAFYTEVLGFRVSDRVGDP-GVDAAAFLRCDE--DHHDLALFPGP------ERPGLHHVAFEVESLD 71 (131)
T ss_pred CcEEEEcCCHHHHHHHHHhcCCCEEEEEEccC-CceeEEEEEcCC--CcceEEEEcCC------CCCCeeEEEEEcCCHH
Confidence 59999999999999999999999987554332 222344444332 23445554311 1457899999999864
Q ss_pred ---HHHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEEEEEecc
Q 020803 271 ---KTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDNV 314 (321)
Q Consensus 271 ---~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~ 314 (321)
+++++++++|+++..+|...+.+..++++|+|||||.|||.+..
T Consensus 72 ~~~~~~~~l~~~G~~i~~~~~~~~~~~~~~~~~~DPdG~~iei~~~~ 118 (131)
T cd08343 72 DILRAADRLAANGIQIEFGPGRHGPGNNLFLYFRDPDGNRVELSAEM 118 (131)
T ss_pred HHHHHHHHHHHcCCeeEECCCccCCCCcEEEEEECCCCCEEEEEcCC
Confidence 78899999999998777655544457889999999999999765
No 56
>PRK06724 hypothetical protein; Provisional
Probab=99.68 E-value=1e-15 Score=120.18 Aligned_cols=111 Identities=17% Similarity=0.175 Sum_probs=76.8
Q ss_pred CCceEEEEEeCChhHHHHHHHHhc---CCeeecccCCCCCceEEEEeccCCCCcceEEEeeeccCCCccCCCCCeeEEEE
Q 020803 188 EPLCQVMLRVGDLDRSINFYEQAF---GMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAI 264 (321)
Q Consensus 188 ~~l~hi~l~v~D~e~a~~FY~~vL---G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~~~hi~f 264 (321)
.+++||+|.|+|+++|++||+++| |++.........+ ...+.+..... ......+..|+||
T Consensus 6 ~~i~Hv~l~V~Dle~s~~FY~~vlg~lg~~~~~~~~~~~g--------------~~~l~l~~~~~--~~~~~~g~~h~af 69 (128)
T PRK06724 6 AGIHHIEFWVANLEESISFYDMLFSIIGWRKLNEVAYSTG--------------ESEIYFKEVDE--EIVRTLGPRHICY 69 (128)
T ss_pred cccCEEEEEeCCHHHHHHHHHHHHhhCCcEEeeeEeeeCC--------------CeeEEEecCCc--cccCCCCceeEEE
Confidence 579999999999999999999966 5554321111111 11222211110 0112346789999
Q ss_pred Ee---CCHHHHHHHHHHCCCeeecCCccCCC-CCc-eEEEEECCCCCEEEEEecc
Q 020803 265 GT---DDVYKTAEAIKLFGGKVTREPGPLPG-INT-KITACLDPDGWKTVFVDNV 314 (321)
Q Consensus 265 ~v---~dl~~~~~~l~~~G~~~~~~p~~~~~-~~~-~~~~~~DPdG~~iel~~~~ 314 (321)
.| +|+++++++|+++|+++..+|...+. +.+ +.+||+|||||.||++..+
T Consensus 70 ~v~~~~dvd~~~~~l~~~G~~~~~~p~~~~~~~~g~~~~~f~DPdG~~iEl~~~~ 124 (128)
T PRK06724 70 QAINRKVVDEVAEFLSSTKIKIIRGPMEMNHYSEGYYTIDFYDPNGFIIEVAYTP 124 (128)
T ss_pred ecCChHHHHHHHHHHHHCCCEEecCCcccCCCCCCEEEEEEECCCCCEEEEEeCC
Confidence 98 78999999999999999877765442 223 7789999999999998764
No 57
>cd08346 PcpA_N_like N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The N-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.68 E-value=1e-15 Score=119.26 Aligned_cols=120 Identities=18% Similarity=0.186 Sum_probs=83.3
Q ss_pred CceEEEEEeCChhHHHHHHHHhcCCeeecccCCCCC-ceEEEEeccCCCCcceEEEeeeccCCCc--cCCCCCeeEEEEE
Q 020803 189 PLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEY-KYTIAMMGYGPEDKNVVLELTYNYGVTD--YDKGNAYAQIAIG 265 (321)
Q Consensus 189 ~l~hi~l~v~D~e~a~~FY~~vLG~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~lel~~~~~~~~--~~~~~~~~hi~f~ 265 (321)
+++|++|.|+|+++|++||+++|||++..+....+. .....++.......+..+++........ .....+..|++|.
T Consensus 1 ~i~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~hi~f~ 80 (126)
T cd08346 1 GLHHVTLITRDAQETVDFYTDVLGLRLVKKTVNQDDPGTYHLFFGDGLGSPGTLLTFFEWPDAGPKGRRGPGQIHHIAFS 80 (126)
T ss_pred CcccEEEEcCChhHhHHHHHHccCCEEeeeEeccCCCceEEEEEecCCCCCCCEEEEEecCCCCCCCCCCCCcEEEEEEE
Confidence 478999999999999999999999998766543221 1122223221112245677665333221 1223467899999
Q ss_pred eC---CHHHHHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEEEEE
Q 020803 266 TD---DVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFV 311 (321)
Q Consensus 266 v~---dl~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~ 311 (321)
|+ |+++++++++++|+++..++. . ++ ++.+||+|||||+|||+
T Consensus 81 v~~~~~~~~~~~~~~~~g~~~~~~~~-~-~~-~~~~~~~DP~G~~iE~~ 126 (126)
T cd08346 81 VPSEASLDAWRERLRAAGVPVSGVVD-H-FG-ERSIYFEDPDGLRLELT 126 (126)
T ss_pred cCCHHHHHHHHHHHHHcCCcccceEe-e-cc-eEEEEEECCCCCEEEeC
Confidence 98 579999999999999865432 2 22 58899999999999985
No 58
>cd07239 BphC5-RK37_C_like C-terminal, catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacterium Rhodococcus rhodochrous K37 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the C-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dio
Probab=99.68 E-value=1.3e-15 Score=122.25 Aligned_cols=115 Identities=16% Similarity=0.303 Sum_probs=84.0
Q ss_pred CCCceEEEEEeCChhHHHHHHHHhcCCeeecccCCCCCceEEEEeccCCCCcceEEEeeeccCCCccCCCCCeeEEEEEe
Q 020803 187 PEPLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGT 266 (321)
Q Consensus 187 ~~~l~hi~l~v~D~e~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~~~hi~f~v 266 (321)
+.+++|+.|.|+|+++|++||+++|||++..... . ...++..+. ....+.+.. ...+++.|++|.|
T Consensus 2 ~~~l~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~~---~--~~~~l~~~~--~~~~~~l~~-------~~~~~~~hiaf~v 67 (144)
T cd07239 2 PVKISHVVLNSPDVDKTVAFYEDVLGFRVSDWLG---D--QMAFLRCNS--DHHSIAIAR-------GPHPSLNHVAFEM 67 (144)
T ss_pred CceeeEEEEECCCHHHHHHHHHhcCCCEEEEeeC---C--eEEEEECCC--CcceEEEcc-------CCCCceEEEEEEC
Confidence 4579999999999999999999999999864421 1 123344322 134444432 1234788999999
Q ss_pred CCHHHHH---HHHHHCCCeeecCCccCCCCCceEEEEECCCCCEEEEEeccc
Q 020803 267 DDVYKTA---EAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDNVD 315 (321)
Q Consensus 267 ~dl~~~~---~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~~ 315 (321)
+|++++. ++|+++|+++..+|.....+..+.+||+||+||.|||++...
T Consensus 68 ~d~~~l~~~~~~l~~~Gi~~~~~~~~~~~~~~~~~yf~DPdG~~iE~~~~~~ 119 (144)
T cd07239 68 PSIDEVMRGIGRMIDKGIDILWGPGRHGPGDNTFAYFLDPGGFVIEYTSELE 119 (144)
T ss_pred CCHHHHHHHHHHHHHcCCceeeCCcccCCCCCEEEEEECCCCcEEEeccCce
Confidence 9877775 899999999877664433333467899999999999998753
No 59
>cd08360 MhqB_like_C C-terminal domain of Burkholderia sp. NF100 MhqB and similar proteins; MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. This subfamily contains the C-terminal, catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.68 E-value=1.5e-15 Score=120.42 Aligned_cols=114 Identities=22% Similarity=0.234 Sum_probs=84.2
Q ss_pred eeeceEEEEEeCCh----hhhhhccCCEEEEEEeCCCCceEEEEeeeCCCCcceEEEEEeecCCCCcCCCCCceEEEEEe
Q 020803 61 SFFPLIVVFPAGDG----RFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAV 136 (321)
Q Consensus 61 ~~~i~Hv~l~V~D~----~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hl~f~v 136 (321)
+.+++||+|.|+|+ +||+++|||++..... . ..+|+..+++..+..+.+.... ....|++|++|.|
T Consensus 1 ~~~l~hi~l~v~dl~~s~~FY~~vlGl~~~~~~~--~---~~~~~~~~~~~~~~~i~l~~~~-----~~~~g~~hiaf~v 70 (134)
T cd08360 1 PRRLGHVVLFVPDVEAAEAFYRDRLGFRVSDRFK--G---RGAFLRAAGGGDHHNLFLIKTP-----APMAGFHHAAFEV 70 (134)
T ss_pred CceeeEEEEEcCCHHHHHHHHHHhcCCEEEEEec--C---cEEEEECCCCCCCcEEEEecCC-----CCCCcceEEEEEe
Confidence 35899999999999 9999999999876532 1 2456665432234455554321 1246899999999
Q ss_pred CCHHHHH---HHHHHcCCeeeeCCcccCCCCeEEEEEECCCCcEEEEEecC
Q 020803 137 DDVAKTV---ELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERG 184 (321)
Q Consensus 137 ~dl~~~~---~~l~~~Gv~i~~~p~~~~~g~~~~~~~~DPdG~~iel~~~~ 184 (321)
+|++++. ++|+++|+++...|...+.++..++||.||+||.|||+...
T Consensus 71 ~d~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~y~~DP~G~~iEl~~~~ 121 (134)
T cd08360 71 GDIDEVMLGGNHMLRAGYQTGWGPGRHRIGSNYFWYFRDPWGGEVEYGADM 121 (134)
T ss_pred CCHHHHHHHHHHHHHcCCccccCCCCcCCCccEEEEEECCCCCEEEEEccc
Confidence 9988765 69999999987666555544556789999999999999643
No 60
>PF00903 Glyoxalase: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily This Prosite is specific to glyoxalases This Prosite is specific to Extradiol ring-cleavage dioxygenases This prints entry is specific to bleomycin resistance protein.; InterPro: IPR004360 Glyoxalase I (4.4.1.5 from EC) (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid []. Glyoxalase I is an ubiquitous enzyme which binds one mole of zinc per subunit. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. The domain represented by this entry is found in glyoxalase I and in other related proteins, including fosfomycin resistance proteins FosB [], FosA [], FosX [] and dioxygenases (eg. 4-hydroxyphenylpyruvate dioxygenase).; PDB: 1CJX_A 1NPB_E 3OJT_C 3OJN_A 2IG9_B 3OJJ_B 3OJK_D 1Q0C_D 1F1X_C 3BZA_B ....
Probab=99.68 E-value=8.5e-17 Score=125.53 Aligned_cols=118 Identities=28% Similarity=0.350 Sum_probs=81.3
Q ss_pred CceEEEEEeCChhHHHHHHHHhcCCeeecccCC--CCCceEEEEeccCCCCcceEEEeeeccCCCccCCCC-----CeeE
Q 020803 189 PLCQVMLRVGDLDRSINFYEQAFGMELLRKRDN--PEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGN-----AYAQ 261 (321)
Q Consensus 189 ~l~hi~l~v~D~e~a~~FY~~vLG~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~-----~~~h 261 (321)
+|+||+|.|+|++++++||+++|||++...... .........+..+ ...+++...........+. ...|
T Consensus 1 ~l~Hi~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 76 (128)
T PF00903_consen 1 GLDHIAIRVKDLEKAIDFYTDVLGFRLVEESDNDGEGGDLRIAFLRIG----EGHIELFLNPSPPPRASGHSFPEHGGHH 76 (128)
T ss_dssp EEEEEEEEESCHHHHHHHHHHTTTSEEEEEEEEESTTEEEEEEEEEST----SSCEEEEEEESSSSSSEEEHHHSHTSEE
T ss_pred CeEEEEEEcCCHHHHHHHHHHHhCCcEEeeeccccccccccceeeccc----ccceeeeeecccccccccccccccccee
Confidence 489999999999999999999999999876651 2222334444433 2223333322221111111 3456
Q ss_pred EEEEe---CCHHHHHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEEEE
Q 020803 262 IAIGT---DDVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVF 310 (321)
Q Consensus 262 i~f~v---~dl~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel 310 (321)
+++.+ +|+++++++|++.|+++..+|.....+....+|++|||||.|||
T Consensus 77 i~~~~~~~~dl~~~~~~l~~~g~~~~~~~~~~~~~~~~~~y~~Dp~G~~iE~ 128 (128)
T PF00903_consen 77 IAFLAFDVDDLDAAYERLKAQGVEIVEEPDRYYFGSGYSFYFRDPDGNLIEF 128 (128)
T ss_dssp EEEEESSHHHHHHHHHHHHHTTGEEEEEEEEHSTTCEEEEEEEETTSEEEEE
T ss_pred EEEEeccHHHHHHHHHHHhhcCccEEecCCCCCCCCEEEEEEECCCCCEEEC
Confidence 66665 57889999999999999988876666544556899999999997
No 61
>cd07266 HPCD_N_class_II N-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD); belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the N-terminal, non-catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of extradiol dioxygenases. The class III 3,4-dihydroxyphenylacetate 2,3-dioxygenases belong to a differ
Probab=99.68 E-value=1e-15 Score=118.84 Aligned_cols=114 Identities=22% Similarity=0.193 Sum_probs=81.8
Q ss_pred CCceEEEEEeCChhHHHHHHHHhcCCeeecccCCCCCceEEEEeccCCCCcceEEEeeeccCCCccCCCCCeeEEEEEe-
Q 020803 188 EPLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGT- 266 (321)
Q Consensus 188 ~~l~hi~l~v~D~e~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~~~hi~f~v- 266 (321)
.+++|+.|.|+|++++++||+++|||++..... .+. ++..........+.+.. ...++..|++|.|
T Consensus 3 ~~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~~~----~~~--~~~~~~~~~~~~~~~~~-------~~~~~~~hi~~~v~ 69 (121)
T cd07266 3 LRLGHVELRVTDLEKSREFYVDVLGLVETEEDD----DRI--YLRGLEEFIHHSLVLTK-------APVAGLGHIAFRVR 69 (121)
T ss_pred ceeeEEEEEcCCHHHHHHHHHhccCCEEeccCC----CeE--EEEecCCCceEEEEEee-------CCCCceeEEEEECC
Confidence 478999999999999999999999999865432 122 22211111233444432 1234688999998
Q ss_pred --CCHHHHHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEEEEEecc
Q 020803 267 --DDVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDNV 314 (321)
Q Consensus 267 --~dl~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~ 314 (321)
+|+++++++++++|+++...|.....+.++.+|+.|||||.||++...
T Consensus 70 ~~~dv~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DPdG~~ve~~~~~ 119 (121)
T cd07266 70 SEEDLDKAEAFFQELGLPTEWVEAGEEPGQGRALRVEDPLGFPIEFYAEM 119 (121)
T ss_pred CHHHHHHHHHHHHHcCCCcccccCCcCCCCccEEEEECCCCCEEEEEecc
Confidence 479999999999999987654333333347899999999999998654
No 62
>cd07265 2_3_CTD_N N-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the N-terminal, non-catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the N-terminal do
Probab=99.68 E-value=1.2e-15 Score=118.70 Aligned_cols=112 Identities=25% Similarity=0.257 Sum_probs=81.1
Q ss_pred eeeceEEEEEeCCh----hhhhhccCCEEEEEEeCCCCceEEEEeeeCCCCcceEEEEEeecCCCCcCCCCCceEEEEEe
Q 020803 61 SFFPLIVVFPAGDG----RFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAV 136 (321)
Q Consensus 61 ~~~i~Hv~l~V~D~----~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hl~f~v 136 (321)
+.+|+|++|.|+|+ +||+++|||++..... ++ .+++.......+..+.+.. ....++.|++|.|
T Consensus 2 ~~~l~hv~l~v~Dl~~s~~FY~~~lG~~~~~~~~--~~---~~~~~~~~~~~~~~~~l~~-------~~~~~~~hiaf~v 69 (122)
T cd07265 2 VLRPGHVQLRVLDLEEAIKHYREVLGLDEVGRDD--QG---RVYLKAWDEFDHHSIVLRE-------ADTAGLDFMGFKV 69 (122)
T ss_pred cceEeEEEEEeCCHHHHHHHHHhccCCEeeeecC--Cc---eEEEEccCCCcccEEEecc-------CCCCCeeEEEEEe
Confidence 46899999999999 9999999999876531 11 2444432222233344421 1234788999999
Q ss_pred C---CHHHHHHHHHHcCCeeeeCCcccCCCCeEEEEEECCCCcEEEEEecC
Q 020803 137 D---DVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERG 184 (321)
Q Consensus 137 ~---dl~~~~~~l~~~Gv~i~~~p~~~~~g~~~~~~~~DPdG~~iel~~~~ 184 (321)
+ |+++++++|+++|+++...|.....+.++.+||.|||||.||+++..
T Consensus 70 ~~~~dv~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DPdG~~iE~~~~~ 120 (122)
T cd07265 70 LDDADLEKLEARLQAYGVAVERIPAGELPGVGRRVRFQLPSGHTMELYADK 120 (122)
T ss_pred CCHHHHHHHHHHHHHCCCcEEEcccCCCCCCceEEEEECCCCCEEEEEEec
Confidence 7 79999999999999987655433333456899999999999998753
No 63
>cd07249 MMCE Methylmalonyl-CoA epimerase (MMCE). MMCE, also called methylmalonyl-CoA racemase (EC 5.1.99.1) interconverts (2R)-methylmalonyl-CoA and (2S)-methylmalonyl-CoA. MMCE has been found in bacteria, archaea, and in animals. In eukaryotes, MMCE is an essential enzyme in a pathway that converts propionyl-CoA to succinyl-CoA, and is important in the breakdown of odd-chain length fatty acids, branched-chain amino acids, and other metabolites. In bacteria, MMCE participates in the reverse pathway for propionate fermentation, glyoxylate regeneration, and the biosynthesis of polyketide antibiotics. MMCE is closely related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.67 E-value=2.1e-15 Score=117.95 Aligned_cols=118 Identities=25% Similarity=0.390 Sum_probs=86.1
Q ss_pred ceEEEEEeCChhHHHHHHHHhcCCeeecccCCC-CCceEEEEeccCCCCcceEEEeeeccCCCc------cCCCCCeeEE
Q 020803 190 LCQVMLRVGDLDRSINFYEQAFGMELLRKRDNP-EYKYTIAMMGYGPEDKNVVLELTYNYGVTD------YDKGNAYAQI 262 (321)
Q Consensus 190 l~hi~l~v~D~e~a~~FY~~vLG~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~lel~~~~~~~~------~~~~~~~~hi 262 (321)
|+||+|.|+|++++.+||+++|||++....... ......+++..+ +..+++........ ...+++..|+
T Consensus 1 ~~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~----~~~l~l~~~~~~~~~~~~~~~~~~~g~~h~ 76 (128)
T cd07249 1 IDHIGIAVPDLEAAIKFYRDVLGVGPWEEEEVPPEQGVRVAFLGLG----NVQIELIEPLDDDSPIAKFLEKRGEGLHHI 76 (128)
T ss_pred CcEEEEEeCCHHHHHHHHHHhhCCCCccccccCcccccEEEEEEcC----CEEEEEEEECCCCCcHHHHHhcCCCceEEE
Confidence 689999999999999999999999997655432 223344555432 55666665332211 1245678999
Q ss_pred EEEeCCHHHHHHHHHHCCCeeecCCccCCCCCceEEEEECCC---CCEEEEEe
Q 020803 263 AIGTDDVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPD---GWKTVFVD 312 (321)
Q Consensus 263 ~f~v~dl~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPd---G~~iel~~ 312 (321)
+|.|+|+++++++++++|+++..+|...+.+ ++.+++.||+ |+.|||++
T Consensus 77 ~f~v~d~~~~~~~l~~~G~~~~~~~~~~~~~-g~~~~~~d~~~~~g~~iE~~~ 128 (128)
T cd07249 77 AFEVDDIDAALARLKAQGVRLLQEGPRIGAG-GKRVAFLHPKDTGGVLIELVE 128 (128)
T ss_pred EEEeCCHHHHHHHHHHCCCeeeccCCCccCC-CCEEEEEecCCCceEEEEecC
Confidence 9999999999999999999998877533333 4566666665 99999975
No 64
>cd08351 ChaP_like ChaP, an enzyme involved in the biosynthesis of the antitumor agent chartreusin (cha); and similar proteins. ChaP is an enzyme involved in the biosynthesis of the potent antitumor agent chartreusin (cha). Cha is an aromatic polyketide glycoside produced by Streptomyces chartreusis. ChaP may play a role as a meta-cleavage dioxygenase in the oxidative rearrangement of the anthracyclic polyketide. ChaP belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.67 E-value=2.3e-15 Score=117.42 Aligned_cols=112 Identities=16% Similarity=0.196 Sum_probs=81.8
Q ss_pred CCceEEEEEeCChhHHHHHHHHhcCCeeecccCCCCCceEEEEeccCCCCcceEEEeeeccCCCccCCCCCeeEEEEEeC
Q 020803 188 EPLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGTD 267 (321)
Q Consensus 188 ~~l~hi~l~v~D~e~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~~~hi~f~v~ 267 (321)
-+++|+.|.|+|+++|++||+++||+++.... +.+..+.+. . +..+.+... ....+..|++|.++
T Consensus 3 ~~~~hv~l~v~Dl~~s~~FY~~~lG~~~~~~~----~~~~~~~~~--~---~~~l~~~~~------~~~~~~~h~a~~v~ 67 (123)
T cd08351 3 VTLNHTIVPARDREASAEFYAEILGLPWAKPF----GPFAVVKLD--N---GVSLDFAQP------DGEIPPQHYAFLVS 67 (123)
T ss_pred ceEeEEEEEcCCHHHHHHHHHHhcCCEeeecc----CCEEEEEcC--C---CcEEEEecC------CCCCCcceEEEEeC
Confidence 36899999999999999999999999986532 122222222 1 344554431 11234679999886
Q ss_pred --CHHHHHHHHHHCCCeeecCCccCC------CCCceEEEEECCCCCEEEEEecc
Q 020803 268 --DVYKTAEAIKLFGGKVTREPGPLP------GINTKITACLDPDGWKTVFVDNV 314 (321)
Q Consensus 268 --dl~~~~~~l~~~G~~~~~~p~~~~------~~~~~~~~~~DPdG~~iel~~~~ 314 (321)
|+++++++++++|+++..+|.... .+.++.+||+|||||.|||++.+
T Consensus 68 ~~dl~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~g~~~~~f~DPdG~~iEl~~~~ 122 (123)
T cd08351 68 EEEFDRIFARIRERGIDYWADPQRTEPGQINTNDGGRGVYFLDPDGHLLEIITRP 122 (123)
T ss_pred HHHHHHHHHHHHHcCCceecCCcccccccccCCCCeeEEEEECCCCCEEEEEecc
Confidence 699999999999999877665431 22258999999999999999874
No 65
>cd07246 Glo_EDI_BRP_like_8 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.67 E-value=4.2e-15 Score=115.28 Aligned_cols=115 Identities=22% Similarity=0.224 Sum_probs=84.6
Q ss_pred EEEEeCChhHHHHHHHHhcCCeeecccCCCCCceEEEEeccCCCCcceEEEeeeccCCC--ccCCCCCeeEEEEEeCCHH
Q 020803 193 VMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVT--DYDKGNAYAQIAIGTDDVY 270 (321)
Q Consensus 193 i~l~v~D~e~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~--~~~~~~~~~hi~f~v~dl~ 270 (321)
+.|.|.|+++|.+||+++||+++......+++......+..+ +..+.+....... ....+.+..|++|.|+|++
T Consensus 5 ~~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~d~~ 80 (122)
T cd07246 5 PYLIVRDAAAAIDFYKKAFGAEELERMPDDDGRVMHAELRIG----DSVLMLADEFPEHGSPASWGGTPVSLHLYVEDVD 80 (122)
T ss_pred EEEEECCHHHHHHHHHHhhCCEEEEEEeCCCCCEEEEEEEEC----CEEEEEecCCcccCCCCCCCCceEEEEEEeCCHH
Confidence 458899999999999999999998665433443333334332 2345554321110 1123346779999999999
Q ss_pred HHHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEEEEEe
Q 020803 271 KTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVD 312 (321)
Q Consensus 271 ~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~ 312 (321)
++++++.+.|+++..+|...+++ .+.++++|||||.|+|.+
T Consensus 81 ~~~~~l~~~G~~~~~~~~~~~~g-~~~~~~~DP~G~~~~l~~ 121 (122)
T cd07246 81 ATFARAVAAGATSVMPPADQFWG-DRYGGVRDPFGHRWWIAT 121 (122)
T ss_pred HHHHHHHHCCCeEecCccccccc-ceEEEEECCCCCEEEEec
Confidence 99999999999999888766665 489999999999999986
No 66
>PRK04101 fosfomycin resistance protein FosB; Provisional
Probab=99.67 E-value=2.3e-15 Score=120.16 Aligned_cols=114 Identities=20% Similarity=0.316 Sum_probs=83.9
Q ss_pred eeeeceEEEEEeCCh----hhhhhccCCEEEEEEeCCCCceEEEEeeeCCCCcceEEEEEeecCCCCcCCCCCceEEEEE
Q 020803 60 FSFFPLIVVFPAGDG----RFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIA 135 (321)
Q Consensus 60 m~~~i~Hv~l~V~D~----~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hl~f~ 135 (321)
|..+|+||.|.|+|+ +||+++|||++..+.. ..+++..+ +..+.+......+....+.++.|++|.
T Consensus 1 ~i~~i~hi~L~v~Dl~~s~~FY~~~lG~~~~~~~~------~~~~~~~~----g~~l~l~~~~~~~~~~~~~~~~hiaf~ 70 (139)
T PRK04101 1 MLKGINHICFSVSNLEKSIEFYEKVLGAKLLVKGR------KTAYFDLN----GLWIALNEEKDIPRNEIHQSYTHIAFS 70 (139)
T ss_pred CCCcEEEEEEEecCHHHHHHHHHhccCCEEEeecC------eeEEEecC----CeEEEeeccCCCCCccCCCCeeEEEEE
Confidence 467899999999999 9999999999875421 23555543 233444332221211234568899999
Q ss_pred eC--CHHHHHHHHHHcCCeeeeCCcccCCCCeEEEEEECCCCcEEEEEecC
Q 020803 136 VD--DVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERG 184 (321)
Q Consensus 136 v~--dl~~~~~~l~~~Gv~i~~~p~~~~~g~~~~~~~~DPdG~~iel~~~~ 184 (321)
++ |+++++++|+++|+++...+...+. +++.+||.|||||.|||.+..
T Consensus 71 v~~~dv~~~~~~l~~~G~~i~~~~~~~~~-~~~~~~~~DPdGn~iEl~~~~ 120 (139)
T PRK04101 71 IEEEDFDHWYQRLKENDVNILPGRERDER-DKKSIYFTDPDGHKFEFHTGT 120 (139)
T ss_pred ecHHHHHHHHHHHHHCCceEcCCccccCC-CceEEEEECCCCCEEEEEeCC
Confidence 98 8999999999999998766655443 467899999999999999764
No 67
>cd07242 Glo_EDI_BRP_like_6 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.67 E-value=4.1e-15 Score=116.60 Aligned_cols=117 Identities=21% Similarity=0.254 Sum_probs=84.8
Q ss_pred CceEEEEEeCChhHHHHHHHHhc---CCeeecccCCCCCceEEEEeccCCCCcceEEEeeeccCCCc---cCCCCCeeEE
Q 020803 189 PLCQVMLRVGDLDRSINFYEQAF---GMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTD---YDKGNAYAQI 262 (321)
Q Consensus 189 ~l~hi~l~v~D~e~a~~FY~~vL---G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~---~~~~~~~~hi 262 (321)
+|+|+.|.|+|++++++||+++| ||++..... . ....... ..+..+.+........ ...+.+..|+
T Consensus 1 ~i~Hv~i~v~d~~~~~~Fy~~~l~~~G~~~~~~~~--~-~~~~~~~-----~~~~~i~l~~~~~~~~~~~~~~~~g~~hi 72 (128)
T cd07242 1 GIHHVELTVRDLERSRAFYDWLLGLLGFEEVKEWE--D-GRSWRAG-----DGGTYLVLQQADGESAGRHDRRNPGLHHL 72 (128)
T ss_pred CCceEEEEeCCHHHHHHHHHHHHhhcCCEEEEeec--c-CceEEec-----CCceEEEEEecccCCCcccccCCcCeeEE
Confidence 48999999999999999999999 999876542 1 1112111 1246666665333221 1234568899
Q ss_pred EEEeC---CHHHHHHHHHHCCCeeecCCccC--CCCCceEEEEECCCCCEEEEEec
Q 020803 263 AIGTD---DVYKTAEAIKLFGGKVTREPGPL--PGINTKITACLDPDGWKTVFVDN 313 (321)
Q Consensus 263 ~f~v~---dl~~~~~~l~~~G~~~~~~p~~~--~~~~~~~~~~~DPdG~~iel~~~ 313 (321)
+|.|+ |+++++++++++|+.+...+... ....++.+|++|||||+|||+.+
T Consensus 73 a~~v~~~~d~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~DpdG~~ie~~~~ 128 (128)
T cd07242 73 AFRAPSREAVDELYARLAKRGAEILYAPREPYAGGPGYYALFFEDPDGIRLELVAP 128 (128)
T ss_pred EEEcCCHHHHHHHHHHHHHcCCeEecCCcccccCCCcEEEEEEECCCCcEEEEEeC
Confidence 99997 58999999999999998877542 12225889999999999999864
No 68
>cd08361 PpCmtC_N N-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the N-terminal, non-catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.66 E-value=1.9e-15 Score=118.17 Aligned_cols=111 Identities=17% Similarity=0.201 Sum_probs=80.7
Q ss_pred CCceEEEEEeCChhHHHHHHHHhcCCeeecccCCCCCceEEEEeccCCCCcceEEEeeeccCCCccCCCCCeeEEEEEeC
Q 020803 188 EPLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGTD 267 (321)
Q Consensus 188 ~~l~hi~l~v~D~e~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~~~hi~f~v~ 267 (321)
.+|.|++|.|+|+++|.+||+++|||++..+.. . ..++..+. .+..+.+... . ++..|++|.|+
T Consensus 5 ~~l~~v~l~v~d~~~s~~FY~~vLG~~~~~~~~----~--~~~l~~~~--~~~~i~l~~~-------~-~~~~~iaf~v~ 68 (124)
T cd08361 5 QDIAYVRLGTRDLAGATRFATDILGLQVAERTA----K--ATYFRSDA--RDHTLVYIEG-------D-PAEQASGFELR 68 (124)
T ss_pred EEeeEEEEeeCCHHHHHHHHHhccCceeccCCC----C--eEEEEcCC--ccEEEEEEeC-------C-CceEEEEEEEC
Confidence 468999999999999999999999999865421 1 22344322 2444444321 1 35679999997
Q ss_pred C---HHHHHHHHHHCCCeeecCCccCC--CCCceEEEEECCCCCEEEEEecc
Q 020803 268 D---VYKTAEAIKLFGGKVTREPGPLP--GINTKITACLDPDGWKTVFVDNV 314 (321)
Q Consensus 268 d---l~~~~~~l~~~G~~~~~~p~~~~--~~~~~~~~~~DPdG~~iel~~~~ 314 (321)
| +++++++++++|+++..++.... .+.++++||+|||||.||++..+
T Consensus 69 ~~~dv~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~f~DPdG~~iE~~~~~ 120 (124)
T cd08361 69 DDDALESAATELEQYGHEVRRGTAEECELRKVKAFIAFRDPSGNSIELVVRP 120 (124)
T ss_pred CHHHHHHHHHHHHHcCCceEEcCHHHhhcCCcceEEEEECcCCCEEEEEEee
Confidence 5 99999999999999876543211 22246789999999999998765
No 69
>cd08359 Glo_EDI_BRP_like_22 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.66 E-value=4.4e-15 Score=114.92 Aligned_cols=112 Identities=20% Similarity=0.175 Sum_probs=80.4
Q ss_pred EEEEEeCChhHHHHHHHHhcCCeeecccCCCCCceEEEEeccCCCCcceEEEeeeccCCC----ccCCCCCeeEEEEEeC
Q 020803 192 QVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVT----DYDKGNAYAQIAIGTD 267 (321)
Q Consensus 192 hi~l~v~D~e~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~----~~~~~~~~~hi~f~v~ 267 (321)
+..|.|+|+++|++||+++|||++.... ..+.. +..+. ....+.+....... .........|++|.|+
T Consensus 4 ~~~l~v~D~~~s~~FY~~~lG~~~~~~~----~~~~~--~~~~~--~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~v~ 75 (119)
T cd08359 4 YPVIVTDDLAETADFYVRHFGFTVVFDS----DWYVS--LRSPD--GGVELAFMLPGHETVPAAQYQFQGQGLILNFEVD 75 (119)
T ss_pred eeEEEECCHHHHHHHHHHhhCcEEEecc----CcEEE--EecCC--CceEEEEccCCCCCCcchhcccCCceEEEEEEEC
Confidence 5789999999999999999999987542 12222 22211 12444444321111 0111223459999999
Q ss_pred CHHHHHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEEEEEe
Q 020803 268 DVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVD 312 (321)
Q Consensus 268 dl~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~ 312 (321)
|+++++++++++|+++..+|...+++ .+.++++|||||.|||+|
T Consensus 76 did~~~~~l~~~G~~~~~~~~~~~~g-~~~~~~~DP~G~~ie~~~ 119 (119)
T cd08359 76 DVDAEYERLKAEGLPIVLPLRDEPWG-QRHFIVRDPNGVLIDIVQ 119 (119)
T ss_pred CHHHHHHHHHhcCCCeeeccccCCCc-ceEEEEECCCCCEEEEEC
Confidence 99999999999999988888777765 489999999999999986
No 70
>cd07252 BphC1-RGP6_N_like N-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of 2,3-dihydroxybiphenyl 1,2-dioxygenases. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its N-
Probab=99.66 E-value=3.8e-15 Score=115.69 Aligned_cols=111 Identities=14% Similarity=0.131 Sum_probs=80.6
Q ss_pred CceEEEEEeCChhHHHHHHHHhcCCeeecccCCCCCceEEEEeccCCCCcceEEEeeeccCCCccCCCCCeeEEEEEeC-
Q 020803 189 PLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGTD- 267 (321)
Q Consensus 189 ~l~hi~l~v~D~e~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~~~hi~f~v~- 267 (321)
++.|++|.|+|+++|++||+++|||++..+.. .. ..++..+. .+..+.+... ...+..|++|.++
T Consensus 2 ~l~~v~l~v~Dl~~s~~FY~~~LG~~~~~~~~---~~--~~~~~~~~--~~~~~~l~~~-------~~~~~~~~~f~v~~ 67 (120)
T cd07252 2 SLGYLGVESSDLDAWRRFATDVLGLQVGDRPE---DG--ALYLRMDD--RAWRIAVHPG-------EADDLAYAGWEVAD 67 (120)
T ss_pred cccEEEEEeCCHHHHHHHHHhccCceeccCCC---CC--eEEEEccC--CceEEEEEeC-------CCCceeEEEEEECC
Confidence 68999999999999999999999999865421 11 12233221 2455555431 1246789999996
Q ss_pred --CHHHHHHHHHHCCCeeecCCccC--CCCCceEEEEECCCCCEEEEEec
Q 020803 268 --DVYKTAEAIKLFGGKVTREPGPL--PGINTKITACLDPDGWKTVFVDN 313 (321)
Q Consensus 268 --dl~~~~~~l~~~G~~~~~~p~~~--~~~~~~~~~~~DPdG~~iel~~~ 313 (321)
|+++++++|+++|+++...|... ..+.++.+||+|||||.|||+..
T Consensus 68 ~~dl~~~~~~l~~~Gv~~~~~~~~~~~~~~~~~~~~~~DPdG~~iE~~~~ 117 (120)
T cd07252 68 EAALDALAARLRAAGVAVEEGSAELAAERGVEGLIRFADPDGNRHELFWG 117 (120)
T ss_pred HHHHHHHHHHHHHcCCeEEEcCHHHHhhCCCcEEEEEECCCCCEEEEEec
Confidence 59999999999999987654221 22224789999999999999864
No 71
>cd09014 BphC-JF8_C_like C-terminal, catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C. Th
Probab=99.66 E-value=3.2e-15 Score=122.95 Aligned_cols=120 Identities=20% Similarity=0.167 Sum_probs=83.7
Q ss_pred CCceEEEEEeCChhHHHHHHHHhcCCeeecccCCCCCceEEEEeccCCCCcceEEEeeeccCCCccCCCCCeeEEEEEeC
Q 020803 188 EPLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGTD 267 (321)
Q Consensus 188 ~~l~hi~l~v~D~e~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~~~hi~f~v~ 267 (321)
.+|+|++|.|+|+++|++||+++|||++......+.+.....++.... ....+.+.... .....++.|+||.|+
T Consensus 5 ~~i~Hi~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~l~~~~----~~~~~~~~hiaf~v~ 78 (166)
T cd09014 5 RRLDHVNLLASDVDANRDFMEEVLGFRLREQIRLDNGKEAGAWMSVSN--KVHDVAYTRDP----AGARGRLHHLAYALD 78 (166)
T ss_pred ceeeeEEEEcCCHHHHHHHHHHccCCEEEEEEecCCCceEEEEEeCCC--CceeEEEecCC----CCCCCCceEEEEECC
Confidence 478999999999999999999999999876543332222223333221 12334333211 112246789999998
Q ss_pred C---HHHHHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEEEEEec
Q 020803 268 D---VYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDN 313 (321)
Q Consensus 268 d---l~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~~ 313 (321)
| +++++++|+++|+++..+|..........+|++|||||.|||++.
T Consensus 79 ~~~~l~~~~~~l~~~Gv~i~~~p~~~~~~~~~~~y~~DPdG~~iEl~~~ 127 (166)
T cd09014 79 TREDVLRAADIFLENGIFIEAGPGKHGIQQTFFLYVYEPGGNRVELFGG 127 (166)
T ss_pred CHHHHHHHHHHHHHcCCccccCCcccCCCCceEEEEECCCCCEEEEEEc
Confidence 5 557889999999998777655443333568999999999999987
No 72
>cd08352 Glo_EDI_BRP_like_1 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.65 E-value=3.9e-15 Score=115.73 Aligned_cols=116 Identities=30% Similarity=0.384 Sum_probs=81.2
Q ss_pred eeceEEEEEeCCh----hhhhhccCCEEEEEEeCCC-CceEEEEeeeCCCCcceEEEEEeecCC--C-CcCCCCCceEEE
Q 020803 62 FFPLIVVFPAGDG----RFYTECLGMKLLRKRDIPE-EKYTNAFLGYGPEDSHFVIELTYNYGV--D-KYDIGTGFGHFG 133 (321)
Q Consensus 62 ~~i~Hv~l~V~D~----~FY~~vLG~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~l~l~~~~~~--~-~~~~~~g~~hl~ 133 (321)
.+++||+|.|+|+ +||+++|||++..+...++ ..+. +.+... + ...+++...... . ....+.|++|++
T Consensus 2 ~~~~hi~l~v~d~~~a~~fy~~~lG~~~~~~~~~~~~~~~~-~~~~~~-~--~~~i~l~~~~~~~~~~~~~~~~g~~h~~ 77 (125)
T cd08352 2 FGIHHVAIICSDYEKSKEFYVEILGFKVIREVYRPERGSYK-LDLLLN-G--GYQLELFSFPNPPERPSYPEACGLRHLA 77 (125)
T ss_pred CccceEEEEcCCHHHHHHHHHHhcCCEEeeeeecCCCCcEE-EEEecC-C--CcEEEEEEcCCCCCCCCCCcCCCceEEE
Confidence 4799999999999 9999999999976533222 2222 222221 1 234454432211 1 112345889999
Q ss_pred EEeCCHHHHHHHHHHcCCeeeeCCcccCCCCeEEEEEECCCCcEEEEEe
Q 020803 134 IAVDDVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLE 182 (321)
Q Consensus 134 f~v~dl~~~~~~l~~~Gv~i~~~p~~~~~g~~~~~~~~DPdG~~iel~~ 182 (321)
|.|+|+++++++|+++|+++...+..... +.+.+|+.||+||.|||+|
T Consensus 78 ~~v~d~~~~~~~l~~~G~~~~~~~~~~~~-~~~~~~~~DP~G~~iEl~~ 125 (125)
T cd08352 78 FSVEDIEAAVKHLKAKGVEVEPIRVDEFT-GKRFTFFYDPDGLPLELYE 125 (125)
T ss_pred EEeCCHHHHHHHHHHcCCccccccccCCC-ceEEEEEECCCCCEEEecC
Confidence 99999999999999999998765533332 4567899999999999985
No 73
>cd07255 Glo_EDI_BRP_like_12 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.65 E-value=6.8e-15 Score=114.80 Aligned_cols=116 Identities=23% Similarity=0.307 Sum_probs=83.7
Q ss_pred CceEEEEEeCChhHHHHHHHHhcCCeeecccCCCCCceEEEEeccCCCCcceEEEeeeccCCC-ccCCCCCeeEEEEEeC
Q 020803 189 PLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVT-DYDKGNAYAQIAIGTD 267 (321)
Q Consensus 189 ~l~hi~l~v~D~e~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~-~~~~~~~~~hi~f~v~ 267 (321)
+|+|+.|.|+|++++++||+++|||++..... . .+.+..++ ....+.+....... ......+..|++|.|+
T Consensus 2 ~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~~~----~--~~~l~~~~--~~~~l~l~~~~~~~~~~~~~~~~~hi~f~v~ 73 (125)
T cd07255 2 RIGAVTLRVADLERSLAFYQDVLGLEVLERTD----S--TAVLGTGG--KRPLLVLEEDPDAPPAPPGATGLYHFAILLP 73 (125)
T ss_pred EEEEEEEEECCHHHHHHHHHhccCcEEEEcCC----C--EEEEecCC--CeEEEEEEeCCCCCcccCCCCcEEEEEEECC
Confidence 58999999999999999999999999976521 1 23333321 24556665433221 1223357889999997
Q ss_pred ---CHHHHHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEEEEEeccc
Q 020803 268 ---DVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDNVD 315 (321)
Q Consensus 268 ---dl~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~~ 315 (321)
|+++++++++++|+++.. +...+. ++.+|++|||||+|||.....
T Consensus 74 ~~~~v~~~~~~l~~~g~~~~~-~~~~~~--~~~~~~~DPdG~~iEi~~~~~ 121 (125)
T cd07255 74 SRADLAAALRRLIELGIPLVG-ASDHLV--SEALYLSDPEGNGIEIYADRP 121 (125)
T ss_pred CHHHHHHHHHHHHHcCCceec-cccccc--eeEEEEECCCCCEEEEEEecC
Confidence 599999999999998754 333333 478999999999999987643
No 74
>cd07256 HPCD_C_class_II C-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD), which catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate; belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the C-terminal, catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of
Probab=99.64 E-value=6.4e-15 Score=120.53 Aligned_cols=115 Identities=21% Similarity=0.262 Sum_probs=80.1
Q ss_pred eeeceEEEEEeCCh----hhhhhccCCEEEEEEeCCCCceEEEEeeeCCCCcceEEEEEeecCCCCcCCCCCceEEEEEe
Q 020803 61 SFFPLIVVFPAGDG----RFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAV 136 (321)
Q Consensus 61 ~~~i~Hv~l~V~D~----~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hl~f~v 136 (321)
+++|+||+|.|+|+ +||+++|||++......+++....+++..++ ....+.+.. ..+.++.|++|.|
T Consensus 1 ~~~l~Hv~l~V~Dl~~s~~FY~~vLGl~~~~~~~~~~~~~~~~~l~~~~--~~~~i~l~~-------~~~~~~~Hiaf~v 71 (161)
T cd07256 1 PQRLDHFNLRVPDVDAGLAYYRDELGFRVSEYTEDDDGTTWAAWLHRKG--GVHDTALTG-------GNGPRLHHVAFWV 71 (161)
T ss_pred CceEEEEEEecCCHHHHHHHHHhccCCEEEEEeccCCCcEEEEEEecCC--CcceEEEec-------CCCCceeEEEEEc
Confidence 46899999999999 9999999999876543333333345554332 122333322 2345789999999
Q ss_pred CC---HHHHHHHHHHcCCee--eeCCcccCCCCeEEEEEECCCCcEEEEEecC
Q 020803 137 DD---VAKTVELIKAKGGKV--TREPGPVKGGNTVIAFIEDPDGYKFELLERG 184 (321)
Q Consensus 137 ~d---l~~~~~~l~~~Gv~i--~~~p~~~~~g~~~~~~~~DPdG~~iel~~~~ 184 (321)
+| +++++++|+++|+.+ ...|...+.+....+||+|||||.||+++..
T Consensus 72 ~~~~~v~~~~~~L~~~G~~~~~~~~p~~~g~~~~~~~y~~DPdG~~iEl~~~~ 124 (161)
T cd07256 72 PEPHNIIRTCDLLAAAGYSDRIERGPGRHGISNAFFLYLRDPDGHRIEIYTGD 124 (161)
T ss_pred CCHHHHHHHHHHHHHcCCCcccccCCCccCCCCceEEEEECCCCCeEEEeecC
Confidence 86 777899999999863 2334333323446789999999999999643
No 75
>cd07237 BphC1-RGP6_C_like C-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the C-terminal, catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its C-terminal repeat is represented in thi
Probab=99.64 E-value=5.4e-15 Score=120.07 Aligned_cols=116 Identities=21% Similarity=0.307 Sum_probs=86.1
Q ss_pred eeeceEEEEEeCCh----hhhhhccCCEEEEEEeCC---CCceEEEEeeeCCCCcceEEEEEeecCCCCcCCCCCceEEE
Q 020803 61 SFFPLIVVFPAGDG----RFYTECLGMKLLRKRDIP---EEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFG 133 (321)
Q Consensus 61 ~~~i~Hv~l~V~D~----~FY~~vLG~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hl~ 133 (321)
+++|+||+|.|+|+ +||+++|||++..+...+ ++....+|+.+++ .+..+.+... ..+.+++|++
T Consensus 7 ~~~l~Hi~l~v~Dl~~a~~FY~~~LGl~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~i~~~~~------~~~~g~~Hia 78 (154)
T cd07237 7 DQGLGHVVLATPDPDEAHAFYRDVLGFRLSDEIDIPLPPGPTARVTFLHCNG--RHHSLALAEG------PGPKRIHHLM 78 (154)
T ss_pred CCccCEEEEEeCCHHHHHHHHHHccCCEEEEEEcccCCCCCcceEEEEEeCC--CCCCEEEEcC------CCCceeEEEE
Confidence 56899999999999 999999999987653321 1134567776643 2233444321 1245899999
Q ss_pred EEeCCHH---HHHHHHHHcCCeeeeCCcccCCCCeEEEEEECCCCcEEEEEecC
Q 020803 134 IAVDDVA---KTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERG 184 (321)
Q Consensus 134 f~v~dl~---~~~~~l~~~Gv~i~~~p~~~~~g~~~~~~~~DPdG~~iel~~~~ 184 (321)
|.|+|.+ +++++|+++|+++...+..++.+..+.+|+.||+||.|||+...
T Consensus 79 f~V~d~~~l~~~~~~L~~~G~~v~~~~~~~~~~~~~~~y~~DPdG~~iEl~~~~ 132 (154)
T cd07237 79 LEVTSLDDVGRAYDRVRARGIPIAMTLGRHTNDRMLSFYVRTPSGFAIEYGWGG 132 (154)
T ss_pred EEcCCHHHHHHHHHHHHHcCCceeccCCccCCCCcEEEEEECCCCcEEEeccCc
Confidence 9998754 68999999999998777665545667899999999999998664
No 76
>cd07240 ED_TypeI_classII_N N-terminal domain of type I, class II extradiol dioxygenases; non-catalytic domain. This family contains the N-terminal, non-catalytic, domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this fa
Probab=99.64 E-value=6e-15 Score=113.58 Aligned_cols=110 Identities=21% Similarity=0.328 Sum_probs=83.6
Q ss_pred CceEEEEEeCChhHHHHHHHHhcCCeeecccCCCCCceEEEEeccCCCCcceEEEeeeccCCCccCCCCCeeEEEEEeC-
Q 020803 189 PLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGTD- 267 (321)
Q Consensus 189 ~l~hi~l~v~D~e~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~~~hi~f~v~- 267 (321)
+++|+.|.|+|++++++||+++|||++..... .. .++..+. ..+..+.+... ...+..|++|.|+
T Consensus 2 ~l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~----~~--~~~~~~~-~~~~~~~~~~~-------~~~~~~h~~~~v~~ 67 (117)
T cd07240 2 RIAYAELEVPDLERALEFYTDVLGLTVLDRDA----GS--VYLRCSE-DDHHSLVLTEG-------DEPGVDALGFEVAS 67 (117)
T ss_pred ceeEEEEecCCHHHHHHHHHhccCcEEEeecC----Ce--EEEecCC-CCcEEEEEEeC-------CCCCceeEEEEcCC
Confidence 68999999999999999999999999876542 12 2333221 12444444431 1246789999997
Q ss_pred --CHHHHHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEEEEEec
Q 020803 268 --DVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDN 313 (321)
Q Consensus 268 --dl~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~~ 313 (321)
|++++.++++++|+++...|...+++ ++.+|+.||+||.||++..
T Consensus 68 ~~~v~~~~~~l~~~g~~~~~~~~~~~~~-~~~~~~~DP~G~~ie~~~~ 114 (117)
T cd07240 68 EEDLEALAAHLEAAGVAPEEASDPEPGV-GRGLRFQDPDGHLLELFVE 114 (117)
T ss_pred HHHHHHHHHHHHHcCCceEEcCccCCCC-ceEEEEECCCCCEEEEEEc
Confidence 68999999999999998777545554 4889999999999999865
No 77
>cd07238 Glo_EDI_BRP_like_5 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structure of this family is a that of a strand-swapped dimer.
Probab=99.64 E-value=7.2e-15 Score=112.53 Aligned_cols=109 Identities=18% Similarity=0.212 Sum_probs=79.8
Q ss_pred EEEEEeCChhHHHHHHHHhcCCeeecccCCCCCceEEEEeccCCCCcceEEEeeeccCCCccCCCCCeeEEEEEeCCHHH
Q 020803 192 QVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGTDDVYK 271 (321)
Q Consensus 192 hi~l~v~D~e~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~~~hi~f~v~dl~~ 271 (321)
+..|.|+|++++++||+++|||+..... + +. ..+.... ..+..+.+..... .+....|++|.|+|+++
T Consensus 3 ~~~l~v~Dl~~s~~FY~~~lG~~~~~~~----~-~~-~~~~~~~-~~~~~~~~~~~~~-----~~~~~~~i~~~v~d~~~ 70 (112)
T cd07238 3 VPNLPVADPEAAAAFYADVLGLDVVMDH----G-WI-ATFASPQ-NMTVQVSLATEGG-----TATVVPDLSIEVDDVDA 70 (112)
T ss_pred cceEecCCHHHHHHHHHHhcCceEEEcC----C-ce-EEEeecC-CCCcEEEEecCCC-----CCCCCCEEEEEeCCHHH
Confidence 3468999999999999999999985321 1 22 2222211 1234455543211 12345699999999999
Q ss_pred HHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEEEEEec
Q 020803 272 TAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDN 313 (321)
Q Consensus 272 ~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~~ 313 (321)
++++|+++|+++..+|...+++ .+.+++.|||||.|+|+++
T Consensus 71 ~~~~l~~~G~~~~~~~~~~~~g-~~~~~~~DP~Gn~i~~~~~ 111 (112)
T cd07238 71 ALARAVAAGFAIVYGPTDEPWG-VRRFFVRDPFGKLVNILTH 111 (112)
T ss_pred HHHHHHhcCCeEecCCccCCCc-eEEEEEECCCCCEEEEEEc
Confidence 9999999999998888766665 3889999999999999976
No 78
>TIGR03081 metmalonyl_epim methylmalonyl-CoA epimerase. Members of this protein family are the enzyme methylmalonyl-CoA epimerase (EC 5.1.99.1), also called methylmalonyl-CoA racemase. This enzyme converts (2R)-methylmalonyl-CoA to (2S)-methylmalonyl-CoA, which is then a substrate for methylmalonyl-CoA mutase (TIGR00642). It is known in bacteria, archaea, and as a mitochondrial protein in animals. It is closely related to lactoylglutathione lyase (TIGR00068), which is also called glyoxylase I, and is also a homodimer.
Probab=99.64 E-value=3.7e-15 Score=116.68 Aligned_cols=115 Identities=29% Similarity=0.428 Sum_probs=82.3
Q ss_pred eceEEEEEeCCh----hhhhhccCCEEEEEEeCCCCceEEEEeeeCCCCcceEEEEEeecCCC-C-----cCCCCCceEE
Q 020803 63 FPLIVVFPAGDG----RFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVD-K-----YDIGTGFGHF 132 (321)
Q Consensus 63 ~i~Hv~l~V~D~----~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~-~-----~~~~~g~~hl 132 (321)
|++|++|.|+|+ +||+++|||++......++.....+++..++ ..++|....... . ...+.|+.|+
T Consensus 1 ~i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~----~~i~l~~~~~~~~~~~~~~~~~~~g~~~i 76 (128)
T TIGR03081 1 RIDHVGIAVPDLEEAAKLYEDVLGAHVSHIEEVPEQGVKVVFIALGN----TKVELLEPLGEDSPIAKFLEKNGGGIHHI 76 (128)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHhCCCCccceeCCCCCcEEEEEecCC----EEEEEEecCCCCChHHHHHhcCCCceEEE
Confidence 589999999999 9999999999876543333345566665432 345555432211 1 0124588899
Q ss_pred EEEeCCHHHHHHHHHHcCCeeeeC-CcccCCCCeEEEEE--ECCCCcEEEEEe
Q 020803 133 GIAVDDVAKTVELIKAKGGKVTRE-PGPVKGGNTVIAFI--EDPDGYKFELLE 182 (321)
Q Consensus 133 ~f~v~dl~~~~~~l~~~Gv~i~~~-p~~~~~g~~~~~~~--~DPdG~~iel~~ 182 (321)
||.|+|+++++++|+++|+++..+ |...+ ++.+.+|+ +||||+.||+.|
T Consensus 77 ~~~v~di~~~~~~l~~~G~~~~~~~~~~~~-~g~~~~~~~~~dp~G~~~E~~~ 128 (128)
T TIGR03081 77 AIEVDDIEAALETLKEKGVRLIDEEPRIGA-GGKPVAFLHPKSTGGVLIELEE 128 (128)
T ss_pred EEEcCCHHHHHHHHHHCCCcccCCCCccCC-CCCEEEEecccccCcEEEEecC
Confidence 999999999999999999998764 43333 23455666 799999999975
No 79
>cd08348 BphC2-C3-RGP6_C_like The single-domain 2,3-dihydroxybiphenyl 1,2-dioxygenases (BphC, EC 1.13.11.39) from Rhodococcus globerulus P6, BphC2-RGP6 and BphC3-RGP6, and similar proteins. This subfamily contains Rhodococcus globerulus P6 BphC2-RGP6 and BphC3-RGP6, and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, yielding 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid. This is the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Most type I extradiol dioxygenases are activated by Fe(II). Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC2-RGP6 and BphC3-RGP6 are
Probab=99.63 E-value=1.7e-14 Score=114.07 Aligned_cols=120 Identities=18% Similarity=0.221 Sum_probs=83.7
Q ss_pred CceEEEEEeCChhHHHHHHHHhcCCeeecccCCCCCceEEEEeccCCCCcceEEEeeeccCCCccCCCCCeeEEEEEeCC
Q 020803 189 PLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGTDD 268 (321)
Q Consensus 189 ~l~hi~l~v~D~e~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~~~hi~f~v~d 268 (321)
+|+|+.|.|+|++++++||+++|||++...... .. ..++..+. .....+.+.............+..|++|.|+|
T Consensus 1 ~i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~~--~~--~~~~~~~~-~~~~~l~l~~~~~~~~~~~~~~~~h~~f~v~~ 75 (134)
T cd08348 1 RLSHVVLYVRDLEAMVRFYRDVLGFTVTDRGPL--GG--LVFLSRDP-DEHHQIALITGRPAAPPPGPAGLNHIAFEVDS 75 (134)
T ss_pred CeeEEEEEecCHHHHHHHHHHhcCCEEEeeccC--Cc--EEEEEecC-CCceEEEEEecCCCCCCCCCCCceEEEEEeCC
Confidence 589999999999999999999999998754331 12 23333221 12455666543222111233578899999987
Q ss_pred HH---HHHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEEEEEecccc
Q 020803 269 VY---KTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDNVDF 316 (321)
Q Consensus 269 l~---~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~~~ 316 (321)
++ ++++++.++|+++..++. .++ ++.+|++|||||.|||+.....
T Consensus 76 ~~~v~~~~~~l~~~G~~~~~~~~-~~~--~~~~~~~DP~G~~ie~~~~~~~ 123 (134)
T cd08348 76 LDDLRDLYERLRAAGITPVWPVD-HGN--AWSIYFRDPDGNRLELFVDTPW 123 (134)
T ss_pred HHHHHHHHHHHHHCCCCccccCC-CCc--eeEEEEECCCCCEEEEEEcCCC
Confidence 55 588999999999776532 222 4889999999999999976543
No 80
>cd08349 BLMA_like Bleomycin binding protein (BLMA) and similar proteins; BLMA confers bleomycin (Bm) resistance by directly binding to Bm. BLMA also called Bleomycin resistance protein, confers Bm resistance by directly binding to Bm. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMA is produced by actinomycetes to protect themselves against their own lethal compound. BLMA has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMAs are dimers and each dimer binds to two Bm molecules at the Bm-binding pockets formed at the dimer interface; two Bm molecules are bound per dimer. BLMA belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. As for the large
Probab=99.63 E-value=1.2e-14 Score=110.94 Aligned_cols=109 Identities=27% Similarity=0.338 Sum_probs=80.1
Q ss_pred EEEeCChhHHHHHHHHhcCCeeecccCCCCCceEEEEeccCCCCcceEEEeeeccCCCccCCCCCeeEEEEEeCCHHHHH
Q 020803 194 MLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGTDDVYKTA 273 (321)
Q Consensus 194 ~l~v~D~e~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~~~hi~f~v~dl~~~~ 273 (321)
.|.|+|++++++||+++|||++..... ...+ ..+..+ +..+.+......... ...+..|++|.|+|++++.
T Consensus 3 ~i~v~d~~~s~~FY~~~lg~~~~~~~~--~~~~--~~~~~~----~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 73 (112)
T cd08349 3 VLPVSDIERSLAFYRDVLGFEVDWEHP--EPGY--AFLSRG----GAQLMLSEHDGDEPV-PLGRGGSVYIEVEDVDALY 73 (112)
T ss_pred EEEECCHHHHHHHHHhccCeEEEEEcC--CCcE--EEEEeC----CEEEEEeccCCCCCC-CCCCcEEEEEEeCCHHHHH
Confidence 589999999999999999999876543 1223 233321 455555543322111 2345679999999999999
Q ss_pred HHHHHCCCe-eecCCccCCCCCceEEEEECCCCCEEEEEe
Q 020803 274 EAIKLFGGK-VTREPGPLPGINTKITACLDPDGWKTVFVD 312 (321)
Q Consensus 274 ~~l~~~G~~-~~~~p~~~~~~~~~~~~~~DPdG~~iel~~ 312 (321)
++++++|++ +..++...+++ .+.++++||+||.|||+|
T Consensus 74 ~~l~~~G~~~~~~~~~~~~~g-~~~~~~~DP~G~~ie~~~ 112 (112)
T cd08349 74 AELKAKGADLIVYPPEDQPWG-MREFAVRDPDGNLLRFGE 112 (112)
T ss_pred HHHHHcCCcceecCccCCCcc-cEEEEEECCCCCEEEecC
Confidence 999999999 66666666664 388999999999999975
No 81
>cd07258 PpCmtC_C C-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the C-terminal, catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as for other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.63 E-value=7.9e-15 Score=117.18 Aligned_cols=109 Identities=22% Similarity=0.253 Sum_probs=83.2
Q ss_pred eEEEEEeCCh----hhhhhccCCEEEEEEeCCCCceEEEEeeeCCCCcceEEEEEeecCCCCcCCCCCceEEEEEeCCH-
Q 020803 65 LIVVFPAGDG----RFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVDDV- 139 (321)
Q Consensus 65 ~Hv~l~V~D~----~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hl~f~v~dl- 139 (321)
.||+|.|+|+ +||+++|||++..+.. ...+|+...++..+..+.+.. ....+++|++|.|+|.
T Consensus 1 ~Hv~l~V~Dle~s~~Fy~~vLG~~~~~~~~-----~~~~~l~~~~~~~~h~~~~~~-------~~~~gl~Hiaf~v~~~~ 68 (141)
T cd07258 1 GHVVIGSENFEASRDSLVEDFGFRVSDLIE-----DRIVFMRCHPNPFHHTFAVGP-------ASSSHFHHVNFMVTDID 68 (141)
T ss_pred CcEEEecCCHHHHHHHHHhcCCCEeeeeeC-----CEEEEEEcCCCCCcceeeecc-------CCCCceEEEEEECCCHH
Confidence 4999999999 9999999999887632 145777654332333343321 2345899999999864
Q ss_pred --HHHHHHHHHcCCeeeeCCcccCCCCeEEEEEECCCCcEEEEEecCC
Q 020803 140 --AKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGP 185 (321)
Q Consensus 140 --~~~~~~l~~~Gv~i~~~p~~~~~g~~~~~~~~DPdG~~iel~~~~~ 185 (321)
++++++|+++|+++...|...+.+..+.+||.||+|+.||+.....
T Consensus 69 ~v~~~~~~l~~~G~~~~~~p~~~~~~~~~~~y~~DPdG~~iE~~~~~~ 116 (141)
T cd07258 69 DIGKALYRIKAHDVKVVFGPGRHPPSDSIFFYFLDPDGITVEYSFGME 116 (141)
T ss_pred HHHHHHHHHHHCCCcEEeCCceECCCCCEEEEEECCCCCEEEEEeCcc
Confidence 5689999999999988877666556678999999999999997653
No 82
>cd07235 MRD Mitomycin C resistance protein (MRD). Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.
Probab=99.63 E-value=7.5e-15 Score=114.17 Aligned_cols=113 Identities=20% Similarity=0.198 Sum_probs=76.8
Q ss_pred ceEEEEEeCChhHHHHHHHHhcCCeeecccCCCCCceEEEEeccCCCCcceEEEeeeccC-----CCccCCCCCeeEEEE
Q 020803 190 LCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYG-----VTDYDKGNAYAQIAI 264 (321)
Q Consensus 190 l~hi~l~v~D~e~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~-----~~~~~~~~~~~hi~f 264 (321)
++||+|.|+|+++|++||+. |||++...... ..+..+... + +..+.+..... ........+..|++|
T Consensus 1 ~~~i~l~V~D~~~a~~FY~~-LGf~~~~~~~~--~~~~~~~~~--~---~~~l~l~~~~~~~~~~~~~~~~~~~~~~l~~ 72 (122)
T cd07235 1 LDAVGIVVADMAKSLDFYRR-LGFDFPEEADD--EPHVEAVLP--G---GVRLAWDTVESIRSFTPGWTPTGGHRIALAF 72 (122)
T ss_pred CceEEEEeccHHHHHHHHHH-hCceecCCcCC--CCcEEEEeC--C---CEEEEEEcccceeeecCCCCCCCCCcEEEEE
Confidence 58999999999999999975 99997543221 112221111 1 22232221100 000112334568888
Q ss_pred EeC---CHHHHHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEEEEE
Q 020803 265 GTD---DVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFV 311 (321)
Q Consensus 265 ~v~---dl~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~ 311 (321)
.+. |+++++++|+++|+++..+|...+++ .+.++++|||||.|||+
T Consensus 73 ~~~~~~dvd~~~~~l~~~G~~~~~~~~~~~~g-~~~~~~~DPdG~~iel~ 121 (122)
T cd07235 73 LCETPAEVDALYAELVGAGYPGHKEPWDAPWG-QRYAIVKDPDGNLVDLF 121 (122)
T ss_pred EcCCHHHHHHHHHHHHHCCCCcCCCCccCCCC-CEEEEEECCCCCEEEEe
Confidence 864 89999999999999998888777775 37899999999999996
No 83
>cd08350 BLMT_like BLMT, a bleomycin resistance protein encoded on the transposon Tn5, and similar proteins. BLMT is a bleomycin (Bm) resistance protein, encoded by the ble gene on the transposon Tn5. This protein confers a survival advantage to Escherichia coli host cells. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMT has strong binding affinity to Bm and it protects against this lethal compound through drug sequestering. BLMT has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMT is a dimer with two Bm-binding pockets formed at the dimer interface.
Probab=99.63 E-value=1e-14 Score=113.19 Aligned_cols=108 Identities=22% Similarity=0.246 Sum_probs=77.3
Q ss_pred EEEEEeCChhHHHHHHHHhcCCeeecccCCCCCceEEEEeccCCCCcceEEEeeeccCCCccCCCCCeeEEEEEeCCHHH
Q 020803 192 QVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGTDDVYK 271 (321)
Q Consensus 192 hi~l~v~D~e~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~~~hi~f~v~dl~~ 271 (321)
...|.|+|+++|++||++ |||++..+... .+.. +..+ +..+.+...... .......|++|.|+|+++
T Consensus 5 ~~~l~v~Dl~~s~~FY~~-lG~~~~~~~~~---~~~~--~~~~----~~~l~l~~~~~~---~~~~~~~~~~~~v~dvd~ 71 (120)
T cd08350 5 IPNLPSRDLDATEAFYAR-LGFSVGYRQAA---GYMI--LRRG----DLELHFFAHPDL---DPATSPFGCCLRLPDVAA 71 (120)
T ss_pred cceeEcCCHHHHHHHHHH-cCCEEEecCCC---CEEE--EEcC----CEEEEEEecCcC---CCCCCcceEEEEeCCHHH
Confidence 357899999999999999 99998754431 2332 3322 345666543211 122234689999999999
Q ss_pred HHHHHHHCCCeee-------cCCccCCCCCceEEEEECCCCCEEEEEec
Q 020803 272 TAEAIKLFGGKVT-------REPGPLPGINTKITACLDPDGWKTVFVDN 313 (321)
Q Consensus 272 ~~~~l~~~G~~~~-------~~p~~~~~~~~~~~~~~DPdG~~iel~~~ 313 (321)
++++|+++|+++. .+|...+++ .+.++|+|||||.|||.|+
T Consensus 72 ~~~~l~~~G~~~~~~~~~~~~~~~~~~~g-~~~~~~~DPdG~~ie~~~~ 119 (120)
T cd08350 72 LHAEFRAAGLPETGSGIPRITPPEDQPWG-MREFALVDPDGNLLRFGQP 119 (120)
T ss_pred HHHHHHHhCccccccCCCcccCCcCCCCc-eeEEEEECCCCCEEEeecC
Confidence 9999999999842 344444554 4899999999999999985
No 84
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=99.62 E-value=3.3e-15 Score=113.46 Aligned_cols=108 Identities=24% Similarity=0.341 Sum_probs=77.3
Q ss_pred EEeCChhHHHHHHHHhcCCeeecccCCCCCceEEEEeccCCCCcceEEEeeeccCCCccCCCCCeeEEEEEeCCHHHHHH
Q 020803 195 LRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGTDDVYKTAE 274 (321)
Q Consensus 195 l~v~D~e~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~~~hi~f~v~dl~~~~~ 274 (321)
|.|+|+++|++||+++|||++..... .+..+..+.. .......+..... ......+..|++|.|+|++++++
T Consensus 1 l~v~d~~~a~~FY~~~lg~~~~~~~~----~~~~~~~~~~--~~~~~~~~~~~~~--~~~~~~~~~~~~~~v~dv~~~~~ 72 (108)
T PF12681_consen 1 LPVSDLEAAAAFYEDVLGFEVVFDDP----DYVDFSLGFR--FHDGVIEFLQFPD--PPGPPGGGFHLCFEVEDVDALYE 72 (108)
T ss_dssp EEESSHHHHHHHHHHTTTSEEEEEET----SEEEEEETEE--EEEEEEEEEEEES--SSSSSSSEEEEEEEESHHHHHHH
T ss_pred CccCCHHHHHHHHHHhcCCEEEEeCC----CeEEEEeccc--hhhhhHHHccCCc--cccCCCceeEEEEEEcCHHHHHH
Confidence 68999999999999999999987332 2333333210 0011222332221 22335578899999999999999
Q ss_pred HHHHCCCeeecCCccCCCCCceEEEEECCCCCEEEEE
Q 020803 275 AIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFV 311 (321)
Q Consensus 275 ~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~ 311 (321)
+++++|+++..+|...+++ .+.+++.|||||.|||+
T Consensus 73 ~l~~~G~~~~~~~~~~~~g-~~~~~~~DPdG~~ie~~ 108 (108)
T PF12681_consen 73 RLKELGAEIVTEPRDDPWG-QRSFYFIDPDGNRIEFC 108 (108)
T ss_dssp HHHHTTSEEEEEEEEETTS-EEEEEEE-TTS-EEEEE
T ss_pred HHHHCCCeEeeCCEEcCCC-eEEEEEECCCCCEEEeC
Confidence 9999999999888887775 48999999999999985
No 85
>cd07267 THT_Oxygenase_N N-terminal domain of 2,4,5-trihydroxytoluene (THT) oxygenase. This subfamily contains the N-terminal, non-catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=99.62 E-value=1.2e-14 Score=111.69 Aligned_cols=109 Identities=21% Similarity=0.268 Sum_probs=78.6
Q ss_pred CCceEEEEEeCChhHHHHHHHHhcCCeeecccCCCCCceEEEEeccCCCCcceEEEeeeccCCCccCCCCCeeEEEEEeC
Q 020803 188 EPLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGTD 267 (321)
Q Consensus 188 ~~l~hi~l~v~D~e~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~~~hi~f~v~ 267 (321)
.+++|+.|.|+|+++|.+||++ |||++..+.. + .. ++..+.. ....+.+.. ...++..|++|.|+
T Consensus 2 ~~l~hv~l~v~Dl~~s~~FY~~-lGl~~~~~~~---~--~~-~~~~~~~-~~~~~~~~~-------~~~~~~~~~af~v~ 66 (113)
T cd07267 2 TDIAHVRFEHPDLDKAERFLTD-FGLEVAARTD---D--EL-YYRGYGT-DPFVYVARK-------GEKARFVGAAFEAA 66 (113)
T ss_pred cEEEEEEEccCCHHHHHHHHHH-cCCEEEEecC---C--eE-EEecCCC-ccEEEEccc-------CCcCcccEEEEEEC
Confidence 3689999999999999999999 9999865432 1 12 2332211 122222111 12346789999999
Q ss_pred CHHHHHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEEEEEec
Q 020803 268 DVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDN 313 (321)
Q Consensus 268 dl~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~~ 313 (321)
|.+++.+.++++|+.+...+. .+++ ++.+||+|||||.|||+..
T Consensus 67 ~~~~~~~~~~~~g~~~~~~~~-~~~~-~~~~~~~DPdG~~iEl~~~ 110 (113)
T cd07267 67 SRADLEKAAALPGASVIDDLE-APGG-GKRVTLTDPDGFPVELVYG 110 (113)
T ss_pred CHHHHHHHHHcCCCeeecCCC-CCCC-ceEEEEECCCCCEEEEEec
Confidence 999999999999998775443 3444 4889999999999999864
No 86
>cd08362 BphC5-RrK37_N_like N-terminal, non-catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Rhodococcus rhodochrous K37, and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the N-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dioxyge
Probab=99.62 E-value=1e-14 Score=112.95 Aligned_cols=112 Identities=27% Similarity=0.388 Sum_probs=81.6
Q ss_pred CCceEEEEEeCChhHHHHHHHHhcCCeeecccCCCCCceEEEEeccCCCCcceEEEeeeccCCCccCCCCCeeEEEEEe-
Q 020803 188 EPLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGT- 266 (321)
Q Consensus 188 ~~l~hi~l~v~D~e~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~~~hi~f~v- 266 (321)
.+|+|+.|.|+|++++++||+++|||++..... .+. ++..+. .....+.+.. ...++..|++|.|
T Consensus 2 ~~i~hv~l~v~d~~~s~~FY~~~lG~~~~~~~~----~~~--~~~~~~-~~~~~~~~~~-------~~~~~~~~~~~~v~ 67 (120)
T cd08362 2 TALRGVGLGVPDLAAAAAFYREVWGLSVVAEDD----GIV--YLRATG-SEHHILRLRR-------SDRNRLDVVSFSVA 67 (120)
T ss_pred ceeeEEEEecCCHHHHHHHHHhCcCcEEEEecC----CEE--EEECCC-CccEEEEecc-------CCCCCCceEEEEeC
Confidence 468999999999999999999999999864422 222 233221 1233343321 1223568999999
Q ss_pred --CCHHHHHHHHHHCCCeeecCCccC--CCCCceEEEEECCCCCEEEEEecc
Q 020803 267 --DDVYKTAEAIKLFGGKVTREPGPL--PGINTKITACLDPDGWKTVFVDNV 314 (321)
Q Consensus 267 --~dl~~~~~~l~~~G~~~~~~p~~~--~~~~~~~~~~~DPdG~~iel~~~~ 314 (321)
+|+++++++++++|+++..+|... +++ ++.++|+||+||.|||+...
T Consensus 68 ~~~~l~~~~~~l~~~G~~~~~~~~~~~~~~~-~~~~~~~DP~G~~iel~~~~ 118 (120)
T cd08362 68 SRADVDALARQVAARGGTVLSEPGATDDPGG-GYGFRFFDPDGRLIEFSADV 118 (120)
T ss_pred CHHHHHHHHHHHHHcCCceecCCcccCCCCC-ceEEEEECCCCCEEEEEecc
Confidence 579999999999999988776432 333 57899999999999998764
No 87
>cd07244 FosA FosA, a Fosfomycin resistance protein, catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. This subfamily family contains FosA, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosA, catalyzes the addition of glutathione to the antibiotic fosfomycin, (1R,2S)-epoxypropylphosphonic acid, making it inactive. FosA is a Mn(II) dependent enzyme. It is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.62 E-value=9.8e-15 Score=113.52 Aligned_cols=109 Identities=26% Similarity=0.355 Sum_probs=78.4
Q ss_pred CceEEEEEeCChhHHHHHHHHhcCCeeecccCCCCCceEEEEeccCCCCcceEEEeeeccCCCccCCCCCeeEEEEEe--
Q 020803 189 PLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGT-- 266 (321)
Q Consensus 189 ~l~hi~l~v~D~e~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~~~hi~f~v-- 266 (321)
+++|+.|.|+|++++.+||+++|||++..... + . .++..+ ...+.+..... ....++..|++|.+
T Consensus 1 ~i~hv~l~v~d~~~~~~FY~~vLG~~~~~~~~--~--~--~~~~~~----~~~~~l~~~~~---~~~~~~~~hi~f~v~~ 67 (121)
T cd07244 1 GINHITLAVSDLERSVAFYVDLLGFKLHVRWD--K--G--AYLEAG----DLWLCLSVDAN---VGPAKDYTHYAFSVSE 67 (121)
T ss_pred CcceEEEEECCHHHHHHHHHHhcCCEEEEecC--C--c--eEEecC----CEEEEEecCCC---CCCCCCeeeEEEEeCH
Confidence 58999999999999999999999999865432 1 1 122222 22233322111 12235678999998
Q ss_pred CCHHHHHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEEEEEecc
Q 020803 267 DDVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDNV 314 (321)
Q Consensus 267 ~dl~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~ 314 (321)
+|+++++++++++|+++..++.. . ++.+||+|||||.|||+...
T Consensus 68 ~dl~~~~~~l~~~G~~~~~~~~~--~--~~~~~f~DPdG~~ie~~~~~ 111 (121)
T cd07244 68 EDFASLKEKLRQAGVKEWKENTS--E--GDSFYFLDPDGHKLELHVGS 111 (121)
T ss_pred HHHHHHHHHHHHcCCcccCCCCC--C--ccEEEEECCCCCEEEEEeCC
Confidence 58999999999999998654332 2 47899999999999999753
No 88
>cd07261 Glo_EDI_BRP_like_11 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.62 E-value=1.6e-14 Score=110.93 Aligned_cols=108 Identities=26% Similarity=0.309 Sum_probs=79.5
Q ss_pred EEEEeCChhHHHHHHHHhcCCeeecccCCCCCceEEEEeccCCCCcceEEEeeeccCCCc-cCCCCCeeEEEEEeCC---
Q 020803 193 VMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTD-YDKGNAYAQIAIGTDD--- 268 (321)
Q Consensus 193 i~l~v~D~e~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~-~~~~~~~~hi~f~v~d--- 268 (321)
+.|.|+|+++|++||+++||+++.... ..+..+... + +..+.+........ .....+..|++|.|+|
T Consensus 2 ~~l~v~d~~~a~~FY~~~lg~~~~~~~----~~~~~~~~~--~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 72 (114)
T cd07261 2 VLLYVEDPAASAEFYSELLGREPVELS----PTFALFVLG--S---GVKLGLWSRHTVEPASDATGGGSELAFMVDDGAA 72 (114)
T ss_pred EEEEECCHHHHHHHHHHHcCCCccCCC----CceEEEEeC--C---CcEEEEeeccccCCCCCCCCCceEEEEEcCCHHH
Confidence 679999999999999999999986532 223333322 1 34555554332211 1223467899999975
Q ss_pred HHHHHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEEEEE
Q 020803 269 VYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFV 311 (321)
Q Consensus 269 l~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~ 311 (321)
++++++++.++|+++..+|...++ ++.++|+|||||.|||+
T Consensus 73 ~~~~~~~~~~~g~~v~~~~~~~~~--g~~~~~~DPdGn~ie~~ 113 (114)
T cd07261 73 VDALYAEWQAKGVKIIQEPTEMDF--GYTFVALDPDGHRLRVF 113 (114)
T ss_pred HHHHHHHHHHCCCeEecCccccCC--ccEEEEECCCCCEEEee
Confidence 889999999999999988877666 47899999999999986
No 89
>cd08345 Fosfomycin_RP Fosfomycin resistant protein; inhibits the biological function of fosfomycin. This family contains three types of fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. The three types of fosfomycin resistance proteins, employ different mechanisms to render fosfomycin [(1R,2S)-epoxypropylphosphonic acid] inactive. FosB catalyzes the addition of L-cysteine to the epoxide ring of fosfomycin. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. FosA catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. Catalytic activities of both FosX and FosA are Mn(II)-dependent, but FosB is activated by Mg(II). Fosfomycin resistant proteins are evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.62 E-value=9e-15 Score=112.02 Aligned_cols=109 Identities=22% Similarity=0.347 Sum_probs=76.7
Q ss_pred EEEEEeCChhHHHHHHHHhcCCeeecccCCCCCceEEEEeccCCCCcceEEEeeeccCCCccCCCCCeeEEEEEe--CCH
Q 020803 192 QVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGT--DDV 269 (321)
Q Consensus 192 hi~l~v~D~e~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~~~hi~f~v--~dl 269 (321)
|+.|.|+|++++++||+++|||++..+... ... +..+ ...+.+...... .....+..|++|.| +|+
T Consensus 1 Hv~l~v~d~~~s~~Fy~~~lg~~~~~~~~~----~~~--~~~~----~~~l~~~~~~~~--~~~~~~~~hiaf~v~~~d~ 68 (113)
T cd08345 1 HITLIVKDLNKSIAFYRDILGAELIYSSSK----EAY--FELA----GLWICLMEEDSL--QGPERTYTHIAFQIQSEEF 68 (113)
T ss_pred CeeEEECCHHHHHHHHHHhcCCeeeeccCc----eeE--EEec----CeEEEeccCCCc--CCCCCCccEEEEEcCHHHH
Confidence 899999999999999999999998654321 111 2211 234444332211 11234678999999 479
Q ss_pred HHHHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEEEEEec
Q 020803 270 YKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDN 313 (321)
Q Consensus 270 ~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~~ 313 (321)
++++++++++|+++...+...++ .++.+|++|||||.||+...
T Consensus 69 ~~~~~~l~~~G~~~~~~~~~~~~-~~~~~~~~DPdG~~iEi~~~ 111 (113)
T cd08345 69 DEYTERLKALGVEMKPERPRVQG-EGRSIYFYDPDGHLLELHAG 111 (113)
T ss_pred HHHHHHHHHcCCccCCCccccCC-CceEEEEECCCCCEEEEEeC
Confidence 99999999999998644322222 25899999999999999853
No 90
>cd09012 Glo_EDI_BRP_like_24 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.61 E-value=1.3e-14 Score=113.21 Aligned_cols=113 Identities=22% Similarity=0.218 Sum_probs=78.4
Q ss_pred ceEEEEEeCChhHHHHHHHHhcCCeeecccCCCCCceEEEEeccCCCCcceEEEeeeccCCC-----cc--CCCCCeeEE
Q 020803 190 LCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVT-----DY--DKGNAYAQI 262 (321)
Q Consensus 190 l~hi~l~v~D~e~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~-----~~--~~~~~~~hi 262 (321)
+.+++|.|+|+++|++||++ |||++......+. ...+..+ + ...+.+....... +. ..+.+..|+
T Consensus 1 ~~~v~l~V~Dl~~s~~FY~~-lGf~~~~~~~~~~--~~~~~~~--~---~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~l 72 (124)
T cd09012 1 MIFINLPVKDLEKSTAFYTA-LGFEFNPQFSDEK--AACMVIS--D---NIFVMLLTEDFFQTFTPKPIADTKKSTEVLI 72 (124)
T ss_pred CEEEEeecCCHHHHHHHHHH-CCCEEccccCCCC--eEEEEEC--C---ceEEEEEcHHHHhhccCCCcccCCCCCeEEE
Confidence 35799999999999999976 9999864333222 2222222 1 3344444321100 00 123356799
Q ss_pred EEEeC---CHHHHHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEEEEEe
Q 020803 263 AIGTD---DVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVD 312 (321)
Q Consensus 263 ~f~v~---dl~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~ 312 (321)
+|.|+ |+++++++++++|+++..+|...++ ++.+||+|||||.|||+.
T Consensus 73 ~f~v~~~~~vd~~~~~l~~~G~~i~~~p~~~~~--~~~~~~~DPdG~~ie~~~ 123 (124)
T cd09012 73 SLSADSREEVDELVEKALAAGGKEFREPQDHGF--MYGRSFADLDGHLWEVLW 123 (124)
T ss_pred EEeCCCHHHHHHHHHHHHHCCCcccCCcccCCc--eEEEEEECCCCCEEEEEE
Confidence 99997 5889999999999999888776665 478899999999999974
No 91
>cd08354 Glo_EDI_BRP_like_13 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.61 E-value=1.7e-14 Score=111.90 Aligned_cols=114 Identities=20% Similarity=0.258 Sum_probs=79.6
Q ss_pred ceEEEEEeCChhHHHHHHHHhcCCeeecccCCCCCceEEEEeccCCCCcceEEEeeeccCCC------ccCCCCCeeEEE
Q 020803 190 LCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVT------DYDKGNAYAQIA 263 (321)
Q Consensus 190 l~hi~l~v~D~e~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~------~~~~~~~~~hi~ 263 (321)
+.|+.|.|+|++++++||+++|||++..+. ++.+. ++..+. ...+.+....... ......+..|++
T Consensus 1 ~~~~~l~v~d~~~s~~Fy~~~lG~~~~~~~---~~~~~--~l~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (122)
T cd08354 1 ILETALYVDDLEAAEAFYEDVLGLELMLKE---DRRLA--FFWVGG---RGMLLLFDPGATSTPGGEIPPHGGSGPGHFA 72 (122)
T ss_pred CeEEEEEeCCHHHHHHHHHhccCCEEeecC---CCceE--EEEcCC---CcEEEEEecCCcccccCCCCCCCCCCccEEE
Confidence 468999999999999999999999987641 22232 233222 1334333321111 111234678999
Q ss_pred EEe--CCHHHHHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEEEEEec
Q 020803 264 IGT--DDVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDN 313 (321)
Q Consensus 264 f~v--~dl~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~~ 313 (321)
|.+ +|++++++++.++|+++...+. .+++ ++.+|++|||||.|||+++
T Consensus 73 ~~v~~~dl~~~~~~l~~~g~~~~~~~~-~~~~-~~~~~~~DP~G~~ie~~~~ 122 (122)
T cd08354 73 FAIPAEELAEWEAHLEAKGVAIESEVQ-WPRG-GRSLYFRDPDGNLLELATP 122 (122)
T ss_pred EEcCHHHHHHHHHHHHhcCCceecccc-CCCC-eeEEEEECCCCCEEEEecC
Confidence 998 5899999999999999876543 2333 5889999999999999864
No 92
>cd07262 Glo_EDI_BRP_like_19 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.61 E-value=2.1e-14 Score=111.77 Aligned_cols=114 Identities=23% Similarity=0.264 Sum_probs=79.7
Q ss_pred ceEEEEEeCChhHHHHHHHHh---cCCeeecccCCCCCceEEEEeccCCCCcceEEEeeeccCCCccCCCCCeeEEEEEe
Q 020803 190 LCQVMLRVGDLDRSINFYEQA---FGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGT 266 (321)
Q Consensus 190 l~hi~l~v~D~e~a~~FY~~v---LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~~~hi~f~v 266 (321)
++|++|.|+|+++|++||+++ ||+++..+.. ..+ +. +.... ....+.+.......+ ....+..|++|.|
T Consensus 1 l~hv~l~v~d~~~s~~FY~~~f~~lg~~~~~~~~---~~~-~~-~~~~~--~~~~~~l~~~~~~~~-~~~~~~~hi~f~v 72 (123)
T cd07262 1 IDHVTLGVNDLERARAFYDAVLAPLGIKRVMEDG---PGA-VG-YGKGG--GGPDFWVTKPFDGEP-ATAGNGTHVAFAA 72 (123)
T ss_pred CcEEEEecCcHHHHHHHHHHHHhhcCceEEeecC---Cce-eE-eccCC--CCceEEEeccccCCC-CCCCCceEEEEEC
Confidence 589999999999999999998 6998865431 112 22 22211 244555544322111 1223457999999
Q ss_pred CC---HHHHHHHHHHCCCeeecCCccCCC--CCceEEEEECCCCCEEEEE
Q 020803 267 DD---VYKTAEAIKLFGGKVTREPGPLPG--INTKITACLDPDGWKTVFV 311 (321)
Q Consensus 267 ~d---l~~~~~~l~~~G~~~~~~p~~~~~--~~~~~~~~~DPdG~~iel~ 311 (321)
+| ++++.+++.++|+.+..+|...++ ...+.+||+|||||.|||+
T Consensus 73 ~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~DPdG~~ie~~ 122 (123)
T cd07262 73 PSREAVDAFHAAALAAGGTDEGAPGLRPHYGPGYYAAYVRDPDGNKIEAV 122 (123)
T ss_pred CCHHHHHHHHHHHHHcCCccCCCCCCCCCCCCCeEEEEEECCCCCEEEEe
Confidence 86 788999999999998877766553 2235789999999999997
No 93
>KOG0638 consensus 4-hydroxyphenylpyruvate dioxygenase [Amino acid transport and metabolism]
Probab=99.61 E-value=2.2e-15 Score=129.31 Aligned_cols=248 Identities=19% Similarity=0.323 Sum_probs=160.8
Q ss_pred eeeceEEEEEeCCh----hhhhhccCCEEEEEEeCCCCc--eEEEEeeeCCCCcceEEEEEeecCCC-------CcCCCC
Q 020803 61 SFFPLIVVFPAGDG----RFYTECLGMKLLRKRDIPEEK--YTNAFLGYGPEDSHFVIELTYNYGVD-------KYDIGT 127 (321)
Q Consensus 61 ~~~i~Hv~l~V~D~----~FY~~vLG~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~l~l~~~~~~~-------~~~~~~ 127 (321)
..+++||.+.|.|. .||+..|||+.......+.+. +...-++.| . ...-+...+.+. -.++|.
T Consensus 15 ~l~f~Hi~F~vgna~q~A~~y~~~fGfep~A~~~letg~~~~~s~alr~g--~--~vFv~~s~~~p~~~~~G~~l~~Hgd 90 (381)
T KOG0638|consen 15 FLRFHHIEFWVGNAKQAARWYCSGFGFEPLAYRGLETGSREWASHALRQG--K--IVFVFNSAYNPDNSEYGDHLVKHGD 90 (381)
T ss_pred eeeeeEEEEEecCcHHHHHHHHhhcCCcchhcccccccchHHHHHHhhcC--C--EEEEEecCCCCCchhhhhhhhhccc
Confidence 67999999999999 999999999987643222111 111112211 1 112222222211 125777
Q ss_pred CceEEEEEeCCHHHHHHHHHHcCCeeeeCCcccCC--CCeEEEEEECCCCcEEEEEecCCC-------------------
Q 020803 128 GFGHFGIAVDDVAKTVELIKAKGGKVTREPGPVKG--GNTVIAFIEDPDGYKFELLERGPT------------------- 186 (321)
Q Consensus 128 g~~hl~f~v~dl~~~~~~l~~~Gv~i~~~p~~~~~--g~~~~~~~~DPdG~~iel~~~~~~------------------- 186 (321)
|+..+||+|+|++++.+.+.++|+.+..+|..... |..+++.++.+.-....++++...
T Consensus 91 gvkdvafeVeD~da~~~~~va~Ga~v~~~p~~~~da~G~v~~A~l~tygd~thtlvEr~~y~g~FLPGF~~v~~~~~fp~ 170 (381)
T KOG0638|consen 91 GVKDVAFEVEDADAIFQEAVANGAKVVRPPWEESDAQGAVTYAVLKTYGDTTHTLVERKGYKGPFLPGFEPVSSDALFPK 170 (381)
T ss_pred chhceEEEecchHHHHHHHHHcCCcccCCcceeeccCCcEEEEEEecccchhhhhhhhccccccCCCCcccCccccccCC
Confidence 89999999999999999999999999988876553 445677788777667777765420
Q ss_pred -----CCCceEEEEEeC--ChhHHHHHHHHhcCCeeecccCCCCCc--e---EEEEeccCCCCcceEEEeeeccCCC---
Q 020803 187 -----PEPLCQVMLRVG--DLDRSINFYEQAFGMELLRKRDNPEYK--Y---TIAMMGYGPEDKNVVLELTYNYGVT--- 251 (321)
Q Consensus 187 -----~~~l~hi~l~v~--D~e~a~~FY~~vLG~~~~~~~~~~~~~--~---~~~~~~~~~~~~~~~lel~~~~~~~--- 251 (321)
-.+++|++.+++ .++.+.+||.+.|||.-....+.+.-. + +.+.+. ..+....+.+.++....
T Consensus 171 l~~~~~~~iDH~vgn~p~~em~sa~~wy~~~l~Fhrfwsvdd~~v~te~SaLrs~vla--n~~esi~mpinEp~~G~k~k 248 (381)
T KOG0638|consen 171 LPKGGLNRIDHVVGNQPDGEMESALRWYEKCLGFHRFWSVDDSQVHTEYSALRSIVLA--NYEESIKMPINEPAPGKKKK 248 (381)
T ss_pred CCccceeehhhhhccCCcccchHHHHHHHHhhcccccccCCcchhhhHHHHHHHHHHh--cCCccEEEeccCCCCCCccH
Confidence 136899999999 689999999999999876554432110 0 000111 11112233333211111
Q ss_pred -------ccCCCCCeeEEEEEeCCHHHHHHHHHHCCCeeecCCccC--------C--------CC----CceEEEEECCC
Q 020803 252 -------DYDKGNAYAQIAIGTDDVYKTAEAIKLFGGKVTREPGPL--------P--------GI----NTKITACLDPD 304 (321)
Q Consensus 252 -------~~~~~~~~~hi~f~v~dl~~~~~~l~~~G~~~~~~p~~~--------~--------~~----~~~~~~~~DPd 304 (321)
.+..|+|+.|+++.++|+-.+.+.+++.|+++..+|... . .. .-.+..=.|-.
T Consensus 249 sQIqeyv~y~gG~GvQHiaL~tedIi~Ai~~lr~rG~eFLs~Ps~YYqnl~erl~~~~~~vked~~~l~el~ILvD~De~ 328 (381)
T KOG0638|consen 249 SQIQEYVEYHGGAGVQHIALNTEDIIEAIRGLRARGGEFLSPPSTYYQNLKERLSTSIRKVKEDIKLLEELGILVDFDEN 328 (381)
T ss_pred HHHHHHHHhcCCCceeeeeecchHHHHHHHHHHhcCCccccCCHHHHHhHHHHhhhhhhhhhccHHHHHHcCeEEecCCC
Confidence 135678999999999999999999999999999887321 0 00 00233446777
Q ss_pred CCEEEEEecc
Q 020803 305 GWKTVFVDNV 314 (321)
Q Consensus 305 G~~iel~~~~ 314 (321)
|+++.++..+
T Consensus 329 gyLLQIFTKp 338 (381)
T KOG0638|consen 329 GYLLQIFTKP 338 (381)
T ss_pred cEEeeeeccc
Confidence 8888887643
No 94
>cd09014 BphC-JF8_C_like C-terminal, catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C. Th
Probab=99.61 E-value=2.5e-14 Score=117.58 Aligned_cols=118 Identities=20% Similarity=0.273 Sum_probs=84.3
Q ss_pred eeeceEEEEEeCCh----hhhhhccCCEEEEEEeCCCCceEEEEeeeCCCCcceEEEEEeecCCCCcCCCCCceEEEEEe
Q 020803 61 SFFPLIVVFPAGDG----RFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAV 136 (321)
Q Consensus 61 ~~~i~Hv~l~V~D~----~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hl~f~v 136 (321)
..+|+|++|.|+|+ +||+++|||++......+.+....+|+...+ ....+.+..... ....+++|+||.|
T Consensus 4 i~~i~Hi~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~l~~~~~----~~~~~~~hiaf~v 77 (166)
T cd09014 4 VRRLDHVNLLASDVDANRDFMEEVLGFRLREQIRLDNGKEAGAWMSVSN--KVHDVAYTRDPA----GARGRLHHLAYAL 77 (166)
T ss_pred cceeeeEEEEcCCHHHHHHHHHHccCCEEEEEEecCCCceEEEEEeCCC--CceeEEEecCCC----CCCCCceEEEEEC
Confidence 56899999999999 9999999999877644333333446665432 222333322111 1234689999999
Q ss_pred CC---HHHHHHHHHHcCCeeeeCCcccCCCCeEEEEEECCCCcEEEEEecC
Q 020803 137 DD---VAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERG 184 (321)
Q Consensus 137 ~d---l~~~~~~l~~~Gv~i~~~p~~~~~g~~~~~~~~DPdG~~iel~~~~ 184 (321)
+| +++++++|+++|+++...|...+.+...++|+.||+||+||++...
T Consensus 78 ~~~~~l~~~~~~l~~~Gv~i~~~p~~~~~~~~~~~y~~DPdG~~iEl~~~~ 128 (166)
T cd09014 78 DTREDVLRAADIFLENGIFIEAGPGKHGIQQTFFLYVYEPGGNRVELFGGG 128 (166)
T ss_pred CCHHHHHHHHHHHHHcCCccccCCcccCCCCceEEEEECCCCCEEEEEEcC
Confidence 86 5578999999999987666554433445689999999999999873
No 95
>cd09013 BphC-JF8_N_like N-terminal, non-catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C
Probab=99.60 E-value=2.1e-14 Score=111.58 Aligned_cols=109 Identities=20% Similarity=0.259 Sum_probs=79.4
Q ss_pred eeeceEEEEEeCCh----hhhhhccCCEEEEEEeCCCCceEEEEeeeCCCCcceEEEEEeecCCCCcCCCCCceEEEEEe
Q 020803 61 SFFPLIVVFPAGDG----RFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAV 136 (321)
Q Consensus 61 ~~~i~Hv~l~V~D~----~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hl~f~v 136 (321)
..+|+|++|.|+|+ +||+++||+++..+.. ..+++..++......+.+.. ....++.|++|.|
T Consensus 4 i~~i~hv~l~v~dl~~a~~FY~~~lG~~~~~~~~------~~~~l~~~~~~~~~~~~l~~-------~~~~~~~h~af~v 70 (121)
T cd09013 4 IAHLAHVELLTPKPEESLWFFTDVLGLEETGREG------QSVYLRAWGDYEHHSLKLTE-------SPEAGLGHIAWRA 70 (121)
T ss_pred ccEeeEEEEEeCCHHHHHHHHHhCcCCEEEeecC------CeEEEEeccCCCccEEEEee-------CCCCceEEEEEEc
Confidence 46899999999999 9999999999876522 13556543322334444432 1235889999999
Q ss_pred C---CHHHHHHHHHHcCCeeeeCCcccCCCCeEEEEEECCCCcEEEEEecC
Q 020803 137 D---DVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERG 184 (321)
Q Consensus 137 ~---dl~~~~~~l~~~Gv~i~~~p~~~~~g~~~~~~~~DPdG~~iel~~~~ 184 (321)
+ |+++++++++++|+++...+... +.+..+||.|||||.+|++...
T Consensus 71 ~~~~~v~~~~~~l~~~G~~~~~~~~~~--~~~~~~~~~DPdG~~iEl~~~~ 119 (121)
T cd09013 71 SSPEALERRVAALEASGLGIGWIEGDP--GHGKAYRFRSPDGHPMELYWEV 119 (121)
T ss_pred CCHHHHHHHHHHHHHcCCccccccCCC--CCcceEEEECCCCCEEEEEEec
Confidence 7 58889999999999875433222 2445789999999999998653
No 96
>cd07266 HPCD_N_class_II N-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD); belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the N-terminal, non-catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of extradiol dioxygenases. The class III 3,4-dihydroxyphenylacetate 2,3-dioxygenases belong to a differ
Probab=99.60 E-value=1.3e-14 Score=112.59 Aligned_cols=110 Identities=23% Similarity=0.259 Sum_probs=79.5
Q ss_pred eeeceEEEEEeCCh----hhhhhccCCEEEEEEeCCCCceEEEEeeeCCCCcceEEEEEeecCCCCcCCCCCceEEEEEe
Q 020803 61 SFFPLIVVFPAGDG----RFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAV 136 (321)
Q Consensus 61 ~~~i~Hv~l~V~D~----~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hl~f~v 136 (321)
..++.|+.|.|+|+ +||+++|||++..... ..+++..........+.+.. ....+..|++|.|
T Consensus 2 ~~~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~~~------~~~~~~~~~~~~~~~~~~~~-------~~~~~~~hi~~~v 68 (121)
T cd07266 2 ILRLGHVELRVTDLEKSREFYVDVLGLVETEEDD------DRIYLRGLEEFIHHSLVLTK-------APVAGLGHIAFRV 68 (121)
T ss_pred cceeeEEEEEcCCHHHHHHHHHhccCCEEeccCC------CeEEEEecCCCceEEEEEee-------CCCCceeEEEEEC
Confidence 56899999999999 9999999999875421 12444422112233344432 1234788999999
Q ss_pred C---CHHHHHHHHHHcCCeeeeCCcccCCCCeEEEEEECCCCcEEEEEec
Q 020803 137 D---DVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLER 183 (321)
Q Consensus 137 ~---dl~~~~~~l~~~Gv~i~~~p~~~~~g~~~~~~~~DPdG~~iel~~~ 183 (321)
. |+++++++++++|+++...|.....+.++.+|+.|||||.+|++..
T Consensus 69 ~~~~dv~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DPdG~~ve~~~~ 118 (121)
T cd07266 69 RSEEDLDKAEAFFQELGLPTEWVEAGEEPGQGRALRVEDPLGFPIEFYAE 118 (121)
T ss_pred CCHHHHHHHHHHHHHcCCCcccccCCcCCCCccEEEEECCCCCEEEEEec
Confidence 4 6999999999999998765443433455789999999999999864
No 97
>cd07239 BphC5-RK37_C_like C-terminal, catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacterium Rhodococcus rhodochrous K37 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the C-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dio
Probab=99.60 E-value=2.8e-14 Score=114.52 Aligned_cols=110 Identities=21% Similarity=0.347 Sum_probs=81.9
Q ss_pred eeceEEEEEeCCh----hhhhhccCCEEEEEEeCCCCceEEEEeeeCCCCcceEEEEEeecCCCCcCCCCCceEEEEEeC
Q 020803 62 FFPLIVVFPAGDG----RFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVD 137 (321)
Q Consensus 62 ~~i~Hv~l~V~D~----~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hl~f~v~ 137 (321)
.+++||.|.|+|+ +||+++|||++..... . ..+|+..+.. ...+.+.. ....++.|++|.|+
T Consensus 3 ~~l~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~~---~--~~~~l~~~~~--~~~~~l~~-------~~~~~~~hiaf~v~ 68 (144)
T cd07239 3 VKISHVVLNSPDVDKTVAFYEDVLGFRVSDWLG---D--QMAFLRCNSD--HHSIAIAR-------GPHPSLNHVAFEMP 68 (144)
T ss_pred ceeeEEEEECCCHHHHHHHHHhcCCCEEEEeeC---C--eEEEEECCCC--cceEEEcc-------CCCCceEEEEEECC
Confidence 4799999999999 9999999999865421 1 2456665432 23344432 12357889999999
Q ss_pred CHHHH---HHHHHHcCCeeeeCCcccCCCCeEEEEEECCCCcEEEEEecCC
Q 020803 138 DVAKT---VELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGP 185 (321)
Q Consensus 138 dl~~~---~~~l~~~Gv~i~~~p~~~~~g~~~~~~~~DPdG~~iel~~~~~ 185 (321)
|++++ +++|+++|+++...+.....+..+++||.||+||.|||++...
T Consensus 69 d~~~l~~~~~~l~~~Gi~~~~~~~~~~~~~~~~~yf~DPdG~~iE~~~~~~ 119 (144)
T cd07239 69 SIDEVMRGIGRMIDKGIDILWGPGRHGPGDNTFAYFLDPGGFVIEYTSELE 119 (144)
T ss_pred CHHHHHHHHHHHHHcCCceeeCCcccCCCCCEEEEEECCCCcEEEeccCce
Confidence 87776 4899999999987665544445567899999999999998753
No 98
>cd07254 Glo_EDI_BRP_like_20 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and types I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.60 E-value=5.7e-14 Score=108.89 Aligned_cols=112 Identities=23% Similarity=0.303 Sum_probs=79.3
Q ss_pred eEEEEEeCChhHHHHHHHHhcCCeeecccCCCCCceEEEEeccCCCCcceEEEeeeccCCCccCCCCCeeEEEEEeCC--
Q 020803 191 CQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGTDD-- 268 (321)
Q Consensus 191 ~hi~l~v~D~e~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~~~hi~f~v~d-- 268 (321)
.|+.|.|+|+++|.+||+++||++...... .+..+... + ....+.+..... ...++..|++|.|+|
T Consensus 3 ~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~----~~~~~~~~-~---~~~~~~~~~~~~----~~~~~~~h~~f~v~~~~ 70 (120)
T cd07254 3 FHVALNVDDLEASIAFYSKLFGVEPTKVRD----DYAKFLLE-D---PRLNFVLNERPG----APGGGLNHLGVQVDSAE 70 (120)
T ss_pred EEEEEEeCCHHHHHHHHHHHhCCeEecccC----CeeEEEec-C---CceEEEEecCCC----CCCCCeeEEEEEeCCHH
Confidence 589999999999999999999998865432 12222222 1 123333332111 111478899999987
Q ss_pred -HHHHHHHHHHCCCeeecCCccCC-CCCceEEEEECCCCCEEEEEecc
Q 020803 269 -VYKTAEAIKLFGGKVTREPGPLP-GINTKITACLDPDGWKTVFVDNV 314 (321)
Q Consensus 269 -l~~~~~~l~~~G~~~~~~p~~~~-~~~~~~~~~~DPdG~~iel~~~~ 314 (321)
++++++++.++|+++..+|.... ++.++.+|++|||||.|||+.+.
T Consensus 71 dl~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~~ 118 (120)
T cd07254 71 EVAEAKARAEAAGLPTFKEEDTTCCYAVQDKVWVTDPDGNAWEVFVTL 118 (120)
T ss_pred HHHHHHHHHHHcCCeEEccCCcccccCCcceEEEECCCCCEEEEEEee
Confidence 88899999999999887654432 22247899999999999999864
No 99
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=99.60 E-value=3.9e-14 Score=108.69 Aligned_cols=110 Identities=26% Similarity=0.288 Sum_probs=79.7
Q ss_pred ceEEEEEeCCh----hhhhhccCCEEEEEEeCCCCceEEEEeeeCCCCcceEEEEEeecCCCCcCCCCCceEEEEEeCCH
Q 020803 64 PLIVVFPAGDG----RFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVDDV 139 (321)
Q Consensus 64 i~Hv~l~V~D~----~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hl~f~v~dl 139 (321)
+.|++|.|+|+ +||+++||+++..... ++. ..+++..++ .....+....... ....+..|++|.|+|+
T Consensus 1 ~~hi~l~v~d~~~s~~FY~~~lG~~~~~~~~-~~~--~~~~~~~~~---~~~~~~~~~~~~~--~~~~~~~~~~f~v~di 72 (114)
T cd07247 1 PVWFELPTTDPERAKAFYGAVFGWTFEDMGD-GGG--DYAVFSTGG---GAVGGLMKAPEPA--AGSPPGWLVYFAVDDV 72 (114)
T ss_pred CEEEEeeCCCHHHHHHHHHhccCceeeeccC-CCC--ceEEEEeCC---ccEEEEecCCCCC--CCCCCeEEEEEEeCCH
Confidence 58999999999 9999999999976532 122 234454432 1122332221111 1234566899999999
Q ss_pred HHHHHHHHHcCCeeeeCCcccCCCCeEEEEEECCCCcEEEEEe
Q 020803 140 AKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLE 182 (321)
Q Consensus 140 ~~~~~~l~~~Gv~i~~~p~~~~~g~~~~~~~~DPdG~~iel~~ 182 (321)
++++++|+++|+++..+|...+ +.++.+++.|||||.|+|+|
T Consensus 73 ~~~~~~l~~~g~~~~~~~~~~~-~~~~~~~~~DPdG~~~~l~~ 114 (114)
T cd07247 73 DAAAARVEAAGGKVLVPPTDIP-GVGRFAVFADPEGAVFGLWQ 114 (114)
T ss_pred HHHHHHHHHCCCEEEeCCcccC-CcEEEEEEECCCCCEEEeEC
Confidence 9999999999999998876655 35678999999999999985
No 100
>cd08343 ED_TypeI_classII_C C-terminal domain of type I, class II extradiol dioxygenases; catalytic domain. This family contains the C-terminal, catalytic domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this family are
Probab=99.60 E-value=5.1e-14 Score=111.09 Aligned_cols=112 Identities=27% Similarity=0.405 Sum_probs=83.8
Q ss_pred eEEEEEeCCh----hhhhhccCCEEEEEEeCCCCceEEEEeeeCCCCcceEEEEEeecCCCCcCCCCCceEEEEEeCCHH
Q 020803 65 LIVVFPAGDG----RFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVDDVA 140 (321)
Q Consensus 65 ~Hv~l~V~D~----~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hl~f~v~dl~ 140 (321)
+||+|.|+|+ +||+++||+++......+ +....+|+..++ .+..+.+... ....++.|++|.|+|++
T Consensus 1 ~Hv~l~V~dl~~a~~Fy~~~lG~~~~~~~~~~-~~~~~~~~~~~~--~~~~l~~~~~------~~~~~~~hl~~~v~d~~ 71 (131)
T cd08343 1 DHVVLRTPDVAATAAFYTEVLGFRVSDRVGDP-GVDAAAFLRCDE--DHHDLALFPG------PERPGLHHVAFEVESLD 71 (131)
T ss_pred CcEEEEcCCHHHHHHHHHhcCCCEEEEEEccC-CceeEEEEEcCC--CcceEEEEcC------CCCCCeeEEEEEcCCHH
Confidence 5999999999 899999999997664433 333556776542 2334444331 11458899999999864
Q ss_pred ---HHHHHHHHcCCeeeeCCcccCCCCeEEEEEECCCCcEEEEEecCC
Q 020803 141 ---KTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGP 185 (321)
Q Consensus 141 ---~~~~~l~~~Gv~i~~~p~~~~~g~~~~~~~~DPdG~~iel~~~~~ 185 (321)
+++++++++|+++..+|...+.+..+.++|.||+||.|||++..+
T Consensus 72 ~~~~~~~~l~~~G~~i~~~~~~~~~~~~~~~~~~DPdG~~iei~~~~~ 119 (131)
T cd08343 72 DILRAADRLAANGIQIEFGPGRHGPGNNLFLYFRDPDGNRVELSAEMY 119 (131)
T ss_pred HHHHHHHHHHHcCCeeEECCCccCCCCcEEEEEECCCCCEEEEEcCCc
Confidence 689999999999987776555445677899999999999997654
No 101
>cd08363 FosB FosB, a fosfomycin resistance protein, catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin. This subfamily family contains FosB, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosB catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin, (1R,2S)-epoxypropylphosphonic acid, rendering it inactive. FosB is evolutionarily related to glyoxalase I and type I extradiol dioxygenases
Probab=99.59 E-value=2e-14 Score=113.48 Aligned_cols=110 Identities=19% Similarity=0.281 Sum_probs=78.1
Q ss_pred ceEEEEEeCCh----hhhhhccCCEEEEEEeCCCCceEEEEeeeCCCCcceEEEEEeecCCCCcCCCCCceEEEEEeCC-
Q 020803 64 PLIVVFPAGDG----RFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVDD- 138 (321)
Q Consensus 64 i~Hv~l~V~D~----~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hl~f~v~d- 138 (321)
|+||+|.|+|+ +||+++|||++.... + ..+++..+ +..+.+......+......+++|++|.|++
T Consensus 1 i~HV~l~V~Dl~~a~~FY~~~LG~~~~~~~---~---~~~~~~~~----~~~l~l~~~~~~~~~~~~~~~~hiaf~v~~~ 70 (131)
T cd08363 1 INHMTFSVSNLDKSISFYKHVFMEKLLVLG---E---KTAYFTIG----GTWLALNEEPDIPRNEIRQSYTHIAFTIEDS 70 (131)
T ss_pred CceEEEEECCHHHHHHHHHHhhCCEEeccC---C---ccceEeeC----ceEEEEEccCCCCcCCcCccceEEEEEecHH
Confidence 68999999999 999999999986531 1 12344443 233444332221111223478899999984
Q ss_pred -HHHHHHHHHHcCCeeeeCCcccCCCCeEEEEEECCCCcEEEEEecC
Q 020803 139 -VAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERG 184 (321)
Q Consensus 139 -l~~~~~~l~~~Gv~i~~~p~~~~~g~~~~~~~~DPdG~~iel~~~~ 184 (321)
+++++++|+++|+++..++..... .++.+||.|||||.||+.+..
T Consensus 71 dld~~~~~l~~~G~~~~~~~~~~~~-~~~~~~f~DPdG~~iEl~~~~ 116 (131)
T cd08363 71 EFDAFYTRLKEAGVNILPGRKRDVR-DRKSIYFTDPDGHKLEVHTGT 116 (131)
T ss_pred HHHHHHHHHHHcCCcccCCCccccC-cceEEEEECCCCCEEEEecCc
Confidence 999999999999998755443322 457799999999999999764
No 102
>cd08361 PpCmtC_N N-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the N-terminal, non-catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.59 E-value=3.6e-14 Score=110.92 Aligned_cols=108 Identities=17% Similarity=0.200 Sum_probs=80.0
Q ss_pred eeeceEEEEEeCCh----hhhhhccCCEEEEEEeCCCCceEEEEeeeCCCCcceEEEEEeecCCCCcCCCCCceEEEEEe
Q 020803 61 SFFPLIVVFPAGDG----RFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAV 136 (321)
Q Consensus 61 ~~~i~Hv~l~V~D~----~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hl~f~v 136 (321)
..+|.||+|.|+|+ +||+++|||++..+. + ..+|+..++ .+..+.+... .++..|++|+|
T Consensus 4 ~~~l~~v~l~v~d~~~s~~FY~~vLG~~~~~~~---~---~~~~l~~~~--~~~~i~l~~~--------~~~~~~iaf~v 67 (124)
T cd08361 4 LQDIAYVRLGTRDLAGATRFATDILGLQVAERT---A---KATYFRSDA--RDHTLVYIEG--------DPAEQASGFEL 67 (124)
T ss_pred EEEeeEEEEeeCCHHHHHHHHHhccCceeccCC---C---CeEEEEcCC--ccEEEEEEeC--------CCceEEEEEEE
Confidence 67899999999999 999999999986542 1 135666542 2334444321 13567899999
Q ss_pred CC---HHHHHHHHHHcCCeeeeCCcccC--CCCeEEEEEECCCCcEEEEEecC
Q 020803 137 DD---VAKTVELIKAKGGKVTREPGPVK--GGNTVIAFIEDPDGYKFELLERG 184 (321)
Q Consensus 137 ~d---l~~~~~~l~~~Gv~i~~~p~~~~--~g~~~~~~~~DPdG~~iel~~~~ 184 (321)
+| +++++++|+++|+++...+.... .+++.++||.|||||.||++...
T Consensus 68 ~~~~dv~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~f~DPdG~~iE~~~~~ 120 (124)
T cd08361 68 RDDDALESAATELEQYGHEVRRGTAEECELRKVKAFIAFRDPSGNSIELVVRP 120 (124)
T ss_pred CCHHHHHHHHHHHHHcCCceEEcCHHHhhcCCcceEEEEECcCCCEEEEEEee
Confidence 86 99999999999999876554221 23456789999999999998653
No 103
>PF00903 Glyoxalase: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily This Prosite is specific to glyoxalases This Prosite is specific to Extradiol ring-cleavage dioxygenases This prints entry is specific to bleomycin resistance protein.; InterPro: IPR004360 Glyoxalase I (4.4.1.5 from EC) (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid []. Glyoxalase I is an ubiquitous enzyme which binds one mole of zinc per subunit. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. The domain represented by this entry is found in glyoxalase I and in other related proteins, including fosfomycin resistance proteins FosB [], FosA [], FosX [] and dioxygenases (eg. 4-hydroxyphenylpyruvate dioxygenase).; PDB: 1CJX_A 1NPB_E 3OJT_C 3OJN_A 2IG9_B 3OJJ_B 3OJK_D 1Q0C_D 1F1X_C 3BZA_B ....
Probab=99.59 E-value=1e-14 Score=113.67 Aligned_cols=116 Identities=25% Similarity=0.301 Sum_probs=79.6
Q ss_pred eceEEEEEeCCh----hhhhhccCCEEEEEEeC--CCCceEEEEeeeCCCCcceEEEEEeecCCCCcCC---CCCceEEE
Q 020803 63 FPLIVVFPAGDG----RFYTECLGMKLLRKRDI--PEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDI---GTGFGHFG 133 (321)
Q Consensus 63 ~i~Hv~l~V~D~----~FY~~vLG~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~---~~g~~hl~ 133 (321)
+|+||+|.|+|+ +||+++|||++...... ........++..+. ....+............. ..+..|++
T Consensus 1 ~l~Hi~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~i~ 78 (128)
T PF00903_consen 1 GLDHIAIRVKDLEKAIDFYTDVLGFRLVEESDNDGEGGDLRIAFLRIGE--GHIELFLNPSPPPRASGHSFPEHGGHHIA 78 (128)
T ss_dssp EEEEEEEEESCHHHHHHHHHHTTTSEEEEEEEEESTTEEEEEEEEESTS--SCEEEEEEESSSSSSEEEHHHSHTSEEEE
T ss_pred CeEEEEEEcCCHHHHHHHHHHHhCCcEEeeeccccccccccceeecccc--cceeeeeeccccccccccccccccceeEE
Confidence 689999999999 99999999999988662 22233445555432 233333332222111111 01345666
Q ss_pred EEeC---CHHHHHHHHHHcCCeeeeCCcccCCCCeEEEEEECCCCcEEEE
Q 020803 134 IAVD---DVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFEL 180 (321)
Q Consensus 134 f~v~---dl~~~~~~l~~~Gv~i~~~p~~~~~g~~~~~~~~DPdG~~iel 180 (321)
+.+. |+++++++|++.|+++..+|.....+....+|+.||+||.|||
T Consensus 79 ~~~~~~~dl~~~~~~l~~~g~~~~~~~~~~~~~~~~~~y~~Dp~G~~iE~ 128 (128)
T PF00903_consen 79 FLAFDVDDLDAAYERLKAQGVEIVEEPDRYYFGSGYSFYFRDPDGNLIEF 128 (128)
T ss_dssp EEESSHHHHHHHHHHHHHTTGEEEEEEEEHSTTCEEEEEEEETTSEEEEE
T ss_pred EEeccHHHHHHHHHHHhhcCccEEecCCCCCCCCEEEEEEECCCCCEEEC
Confidence 6665 6888999999999999988877666555556899999999997
No 104
>cd08351 ChaP_like ChaP, an enzyme involved in the biosynthesis of the antitumor agent chartreusin (cha); and similar proteins. ChaP is an enzyme involved in the biosynthesis of the potent antitumor agent chartreusin (cha). Cha is an aromatic polyketide glycoside produced by Streptomyces chartreusis. ChaP may play a role as a meta-cleavage dioxygenase in the oxidative rearrangement of the anthracyclic polyketide. ChaP belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.58 E-value=4.2e-14 Score=110.26 Aligned_cols=109 Identities=19% Similarity=0.320 Sum_probs=78.9
Q ss_pred eeeeceEEEEEeCCh----hhhhhccCCEEEEEEeCCCCceEEEEeeeCCCCcceEEEEEeecCCCCcCCCCCceEEEEE
Q 020803 60 FSFFPLIVVFPAGDG----RFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIA 135 (321)
Q Consensus 60 m~~~i~Hv~l~V~D~----~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hl~f~ 135 (321)
|..+++|+.|.|+|+ +||+++|||+..... +.+ +++..++ +..+.+... ....+..|++|.
T Consensus 1 ~~~~~~hv~l~v~Dl~~s~~FY~~~lG~~~~~~~----~~~--~~~~~~~---~~~l~~~~~------~~~~~~~h~a~~ 65 (123)
T cd08351 1 MTVTLNHTIVPARDREASAEFYAEILGLPWAKPF----GPF--AVVKLDN---GVSLDFAQP------DGEIPPQHYAFL 65 (123)
T ss_pred CcceEeEEEEEcCCHHHHHHHHHHhcCCEeeecc----CCE--EEEEcCC---CcEEEEecC------CCCCCcceEEEE
Confidence 467899999999999 999999999987532 112 2233222 233444331 112345799998
Q ss_pred eC--CHHHHHHHHHHcCCeeeeCCccc------CCCCeEEEEEECCCCcEEEEEec
Q 020803 136 VD--DVAKTVELIKAKGGKVTREPGPV------KGGNTVIAFIEDPDGYKFELLER 183 (321)
Q Consensus 136 v~--dl~~~~~~l~~~Gv~i~~~p~~~------~~g~~~~~~~~DPdG~~iel~~~ 183 (321)
|+ |+++++++|+++|+++..+|... ..++++.+||.|||||.|||++.
T Consensus 66 v~~~dl~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~g~~~~~f~DPdG~~iEl~~~ 121 (123)
T cd08351 66 VSEEEFDRIFARIRERGIDYWADPQRTEPGQINTNDGGRGVYFLDPDGHLLEIITR 121 (123)
T ss_pred eCHHHHHHHHHHHHHcCCceecCCcccccccccCCCCeeEEEEECCCCCEEEEEec
Confidence 87 69999999999999987665432 12356889999999999999986
No 105
>cd08364 FosX FosX, a fosfomycin resistance protein, catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. This subfamily family contains FosX, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of the configuration at C1 in the presence of Mn(II). The hydrated fosfomycin loses the inhibition activity. FosX is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.58 E-value=4.9e-14 Score=111.27 Aligned_cols=116 Identities=17% Similarity=0.127 Sum_probs=78.9
Q ss_pred eeeeceEEEEEeCCh----hhhhhccCCEEEEEEeCCCCc-eEEEEeeeCCCCcceEEEEEeecCCCCcCCCCCceEEEE
Q 020803 60 FSFFPLIVVFPAGDG----RFYTECLGMKLLRKRDIPEEK-YTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGI 134 (321)
Q Consensus 60 m~~~i~Hv~l~V~D~----~FY~~vLG~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hl~f 134 (321)
|+.+|+||+|.|+|+ +||+++||++...+....... ....++..+ ...+.+..... ....+++|++|
T Consensus 1 mi~~i~hv~l~V~dl~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~----~~~i~l~~~~~----~~~~~~~Hiaf 72 (131)
T cd08364 1 MIEGLSHITLIVKDLNKTTAFLQNIFNAREVYSSGDKTFSLSKEKFFLIG----GLWIAIMEGDS----LQERTYNHIAF 72 (131)
T ss_pred CcccEeEEEEEeCCHHHHHHHHHHHhCCeeEEecccccccccceeEEEcC----CeEEEEecCCC----CCCCCceEEEE
Confidence 466899999999999 999999999886653211100 001122222 12344432111 12346899999
Q ss_pred EeC--CHHHHHHHHHHcCCeeeeCCcccCCCCeEEEEEECCCCcEEEEEecC
Q 020803 135 AVD--DVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERG 184 (321)
Q Consensus 135 ~v~--dl~~~~~~l~~~Gv~i~~~p~~~~~g~~~~~~~~DPdG~~iel~~~~ 184 (321)
.|+ |+++++++|+++|+++.... ....+.++.+||.|||||.+||....
T Consensus 73 ~v~~~~ld~~~~~l~~~gv~~~~~~-~~~~~~g~~~yf~DPdG~~iEl~~~~ 123 (131)
T cd08364 73 KISDSDVDEYTERIKALGVEMKPPR-PRVQGEGRSIYFYDFDNHLFELHTGT 123 (131)
T ss_pred EcCHHHHHHHHHHHHHCCCEEecCC-ccccCCceEEEEECCCCCEEEEecCC
Confidence 998 79999999999999876433 22334567899999999999999653
No 106
>cd08357 Glo_EDI_BRP_like_18 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.58 E-value=3.2e-14 Score=110.84 Aligned_cols=113 Identities=17% Similarity=0.219 Sum_probs=73.5
Q ss_pred EEEEEeCChhHHHHHHHHhcCCeeecccCCCCCceEEEEeccCCCCcceEEEeeeccCC---C-c-cCCCCCeeEEE--E
Q 020803 192 QVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGV---T-D-YDKGNAYAQIA--I 264 (321)
Q Consensus 192 hi~l~v~D~e~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~---~-~-~~~~~~~~hi~--f 264 (321)
||.|.|+|+++|++||+++|||++..... .+. .+... .....+.+...... . . .....+..|++ +
T Consensus 2 Hi~l~v~Dl~~s~~FY~~~lG~~~~~~~~----~~~--~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 73 (125)
T cd08357 2 HLAIPVRDLEAARAFYGDVLGCKEGRSSE----TWV--DFDFF--GHQLVAHLSPNFNADASDNAVDGHPVPVPHFGLIL 73 (125)
T ss_pred eEEEEeCCHHHHHHHHHHhcCCEEeeccC----Ccc--ccccc--CcEEEEEeccCCCcccccCCCCCCccCCceEEEEE
Confidence 89999999999999999999999864321 121 12111 11222222211100 0 0 01112455765 4
Q ss_pred EeCCHHHHHHHHHHCCCeeecCCccCCC---CCceEEEEECCCCCEEEEEe
Q 020803 265 GTDDVYKTAEAIKLFGGKVTREPGPLPG---INTKITACLDPDGWKTVFVD 312 (321)
Q Consensus 265 ~v~dl~~~~~~l~~~G~~~~~~p~~~~~---~~~~~~~~~DPdG~~iel~~ 312 (321)
.++|+++++++|+++|+++..+|..... +.++.+|++|||||.|||..
T Consensus 74 ~~~dv~~~~~~l~~~g~~~~~~p~~~~~~~~~~~~~~~~~DPdG~~iE~~~ 124 (125)
T cd08357 74 SEEEFDALAERLEAAGVEFLIEPYTRFEGQPGEQETFFLKDPSGNALEFKA 124 (125)
T ss_pred eHHHHHHHHHHHHHCCCcEecCcceeccCCcCceeEEEEECCCCCEEEEee
Confidence 5689999999999999999877754211 22488999999999999974
No 107
>cd07249 MMCE Methylmalonyl-CoA epimerase (MMCE). MMCE, also called methylmalonyl-CoA racemase (EC 5.1.99.1) interconverts (2R)-methylmalonyl-CoA and (2S)-methylmalonyl-CoA. MMCE has been found in bacteria, archaea, and in animals. In eukaryotes, MMCE is an essential enzyme in a pathway that converts propionyl-CoA to succinyl-CoA, and is important in the breakdown of odd-chain length fatty acids, branched-chain amino acids, and other metabolites. In bacteria, MMCE participates in the reverse pathway for propionate fermentation, glyoxylate regeneration, and the biosynthesis of polyketide antibiotics. MMCE is closely related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.58 E-value=4e-14 Score=110.65 Aligned_cols=115 Identities=29% Similarity=0.467 Sum_probs=83.1
Q ss_pred ceEEEEEeCCh----hhhhhccCCEEEEEEeCC-CCceEEEEeeeCCCCcceEEEEEeecCC-CC-----cCCCCCceEE
Q 020803 64 PLIVVFPAGDG----RFYTECLGMKLLRKRDIP-EEKYTNAFLGYGPEDSHFVIELTYNYGV-DK-----YDIGTGFGHF 132 (321)
Q Consensus 64 i~Hv~l~V~D~----~FY~~vLG~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~l~l~~~~~~-~~-----~~~~~g~~hl 132 (321)
|+||+|.|+|+ +||+++|||+.......+ ++....+++..+ +..+++...... .. ...+.|..|+
T Consensus 1 ~~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~----~~~l~l~~~~~~~~~~~~~~~~~~~g~~h~ 76 (128)
T cd07249 1 IDHIGIAVPDLEAAIKFYRDVLGVGPWEEEEVPPEQGVRVAFLGLG----NVQIELIEPLDDDSPIAKFLEKRGEGLHHI 76 (128)
T ss_pred CcEEEEEeCCHHHHHHHHHHhhCCCCccccccCcccccEEEEEEcC----CEEEEEEEECCCCCcHHHHHhcCCCceEEE
Confidence 58999999999 999999999998764432 233456677643 345666543321 11 1345789999
Q ss_pred EEEeCCHHHHHHHHHHcCCeeeeCCcccCCCCeEEEEEECCC--CcEEEEEe
Q 020803 133 GIAVDDVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPD--GYKFELLE 182 (321)
Q Consensus 133 ~f~v~dl~~~~~~l~~~Gv~i~~~p~~~~~g~~~~~~~~DPd--G~~iel~~ 182 (321)
+|.|+|+++++++++++|+++..+|.....++..+.++.||+ |+.|||++
T Consensus 77 ~f~v~d~~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~d~~~~~g~~iE~~~ 128 (128)
T cd07249 77 AFEVDDIDAALARLKAQGVRLLQEGPRIGAGGKRVAFLHPKDTGGVLIELVE 128 (128)
T ss_pred EEEeCCHHHHHHHHHHCCCeeeccCCCccCCCCEEEEEecCCCceEEEEecC
Confidence 999999999999999999999887754444344445555555 99999975
No 108
>cd07252 BphC1-RGP6_N_like N-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of 2,3-dihydroxybiphenyl 1,2-dioxygenases. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its N-
Probab=99.58 E-value=4.8e-14 Score=109.50 Aligned_cols=108 Identities=19% Similarity=0.254 Sum_probs=79.2
Q ss_pred eceEEEEEeCCh----hhhhhccCCEEEEEEeCCCCceEEEEeeeCCCCcceEEEEEeecCCCCcCCCCCceEEEEEeCC
Q 020803 63 FPLIVVFPAGDG----RFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVDD 138 (321)
Q Consensus 63 ~i~Hv~l~V~D~----~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hl~f~v~d 138 (321)
+|.||+|.|+|+ +||+++|||++..+.. . ..+++..++ .++.+.+... ...+..|++|.+++
T Consensus 2 ~l~~v~l~v~Dl~~s~~FY~~~LG~~~~~~~~---~--~~~~~~~~~--~~~~~~l~~~-------~~~~~~~~~f~v~~ 67 (120)
T cd07252 2 SLGYLGVESSDLDAWRRFATDVLGLQVGDRPE---D--GALYLRMDD--RAWRIAVHPG-------EADDLAYAGWEVAD 67 (120)
T ss_pred cccEEEEEeCCHHHHHHHHHhccCceeccCCC---C--CeEEEEccC--CceEEEEEeC-------CCCceeEEEEEECC
Confidence 689999999999 9999999999865421 1 235555432 2444555331 13467899999974
Q ss_pred ---HHHHHHHHHHcCCeeeeCCccc--CCCCeEEEEEECCCCcEEEEEecC
Q 020803 139 ---VAKTVELIKAKGGKVTREPGPV--KGGNTVIAFIEDPDGYKFELLERG 184 (321)
Q Consensus 139 ---l~~~~~~l~~~Gv~i~~~p~~~--~~g~~~~~~~~DPdG~~iel~~~~ 184 (321)
+++++++|+++|+++...+... ..+.++.+||+|||||.||++...
T Consensus 68 ~~dl~~~~~~l~~~Gv~~~~~~~~~~~~~~~~~~~~~~DPdG~~iE~~~~~ 118 (120)
T cd07252 68 EAALDALAARLRAAGVAVEEGSAELAAERGVEGLIRFADPDGNRHELFWGP 118 (120)
T ss_pred HHHHHHHHHHHHHcCCeEEEcCHHHHhhCCCcEEEEEECCCCCEEEEEecc
Confidence 8899999999999998655321 233457899999999999999653
No 109
>cd06587 Glo_EDI_BRP_like This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). Type I extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into aromatic substrates, which results in the cleavage of aromatic rings. They are key enzymes in the degradation of aromatic compounds. Type I extradiol dioxygenases include class I and class II enzymes. Class I and II enzymes show sequence similarity; the two-domain clas
Probab=99.57 E-value=4.9e-14 Score=106.37 Aligned_cols=112 Identities=30% Similarity=0.404 Sum_probs=83.4
Q ss_pred EEEEEeCChhHHHHHHHHhcCCeeecccCCCCCceEEEEeccCCCCcceEEEeeeccCCCccCCCCCeeEEEEEeCCHHH
Q 020803 192 QVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGTDDVYK 271 (321)
Q Consensus 192 hi~l~v~D~e~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~~~hi~f~v~dl~~ 271 (321)
|+++.|+|++++++||+++||+++...... .......+..+ +..+++....+......+.+..|++|.|+|+++
T Consensus 1 Hi~i~~~d~~~~~~fy~~~lg~~~~~~~~~--~~~~~~~~~~~----~~~i~l~~~~~~~~~~~~~~~~~~~~~v~~~~~ 74 (112)
T cd06587 1 HVGLTVSDLEAAVAFYEEVLGFEVLFRNGN--GGAEFAVLGLG----GTRLELFEGDEPAPAPSGGGGVHLAFEVDDVDA 74 (112)
T ss_pred CcceeeCCHHHHHHHHHhccCCEEEEeecc--CCEEEEEEecC----CceEEEecCCCCCCcccCCCeeEEEEECCCHHH
Confidence 889999999999999999999998766532 11234444432 466666654332111234578899999999999
Q ss_pred HHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEEEE
Q 020803 272 TAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVF 310 (321)
Q Consensus 272 ~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel 310 (321)
+.+++.++|+.+..++....+ .++.+++.||+||.|||
T Consensus 75 ~~~~l~~~g~~~~~~~~~~~~-~~~~~~~~Dp~G~~~~~ 112 (112)
T cd06587 75 AYERLKAAGVEVLGEPREEPW-GGRVAYFRDPDGNLIEL 112 (112)
T ss_pred HHHHHHHcCCcccCCCcCCCC-CcEEEEEECCCCcEEeC
Confidence 999999999998877652223 25899999999999986
No 110
>cd08347 PcpA_C_like C-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The C-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.57 E-value=7.7e-14 Score=113.53 Aligned_cols=114 Identities=18% Similarity=0.171 Sum_probs=81.1
Q ss_pred eceEEEEEeCCh----hhhhhccCCEEEEEEeCCCCceEEEEeeeCCCCcceEEEEEeecCCCC-cCCCCCceEEEEEeC
Q 020803 63 FPLIVVFPAGDG----RFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDK-YDIGTGFGHFGIAVD 137 (321)
Q Consensus 63 ~i~Hv~l~V~D~----~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~-~~~~~g~~hl~f~v~ 137 (321)
.|+||+|.|+|+ +||+++|||++..+.. + ...+...+. ..+..+.+........ .....++.|++|.|+
T Consensus 1 gl~HI~i~V~Dle~s~~FY~~~LG~~~~~~~~---~--~~~~~~~~~-~~~~~l~l~~~~~~~~~~~~~~~l~Hiaf~v~ 74 (157)
T cd08347 1 GLHGVTLTVRDPEATAAFLTDVLGFREVGEEG---D--RVRLEEGGG-GPGAVVDVLEEPDQPRGRPGAGTVHHVAFRVP 74 (157)
T ss_pred CcccEEEEeCCHHHHHHHHHHhcCCEEEeeeC---C--EEEEEecCC-CCCCEEEEEeCCCCCCCcccCCceEEEEEECC
Confidence 379999999999 9999999999987643 1 233433221 2345666655322211 123357899999999
Q ss_pred C---HHHHHHHHHHcCCeeeeCCcccCCCCeEEEEEECCCCcEEEEEecCC
Q 020803 138 D---VAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGP 185 (321)
Q Consensus 138 d---l~~~~~~l~~~Gv~i~~~p~~~~~g~~~~~~~~DPdG~~iel~~~~~ 185 (321)
| +++++++|+++|+.+.. +... +..+.+||.||+||.||++...+
T Consensus 75 d~~dvd~~~~~L~~~Gv~~~~-~~~~--~~~~s~yf~DPdG~~iEl~~~~~ 122 (157)
T cd08347 75 DDEELEAWKERLEALGLPVSG-IVDR--FYFKSLYFREPGGILFEIATDGP 122 (157)
T ss_pred CHHHHHHHHHHHHHCCCCccc-cccc--ccEEEEEEECCCCcEEEEEECCC
Confidence 8 89999999999998643 3222 34577999999999999998753
No 111
>cd07263 Glo_EDI_BRP_like_16 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.57 E-value=5.8e-14 Score=108.02 Aligned_cols=113 Identities=24% Similarity=0.293 Sum_probs=80.6
Q ss_pred EEEEEeCCh----hhhhhccCCEEEEEEeCCCCceEEEEeeeCCCCcceEEEEEeecCCC--CcCCCCCceEEEEEeCCH
Q 020803 66 IVVFPAGDG----RFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVD--KYDIGTGFGHFGIAVDDV 139 (321)
Q Consensus 66 Hv~l~V~D~----~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~--~~~~~~g~~hl~f~v~dl 139 (321)
||+|.|+|+ +||+++|||++..+....+ +...+.+.... .....+.+....... ......+..|++|.|+|+
T Consensus 1 Hv~l~v~d~~~~~~fY~~~lG~~~~~~~~~~~-~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~di 78 (119)
T cd07263 1 LVSLYVDDQDKALAFYTEKLGFEVREDVPMGG-GFRWVTVAPPG-SPETSLVLAPPANPAAMSGLQPGGTPGLVLATDDI 78 (119)
T ss_pred CceEEeCCHHHHHHHHHhccCeEEEEeeccCC-CcEEEEEeCCC-CCeeEEEEeCCCCccccccccCCCceEEEEEehHH
Confidence 899999999 9999999999987654222 23334443221 113445554332221 112345788999999999
Q ss_pred HHHHHHHHHcCCeeeeCCcccCCCCeEEEEEECCCCcEEEEEe
Q 020803 140 AKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLE 182 (321)
Q Consensus 140 ~~~~~~l~~~Gv~i~~~p~~~~~g~~~~~~~~DPdG~~iel~~ 182 (321)
++++++++++|+++...+...+ .++.+++.||+||.|||++
T Consensus 79 ~~~~~~l~~~g~~~~~~~~~~~--~~~~~~~~DP~G~~ie~~~ 119 (119)
T cd07263 79 DATYEELKARGVEFSEEPREMP--YGTVAVFRDPDGNLFVLVQ 119 (119)
T ss_pred HHHHHHHHhCCCEEeeccccCC--CceEEEEECCCCCEEEEeC
Confidence 9999999999999988774333 4578999999999999975
No 112
>COG3324 Predicted enzyme related to lactoylglutathione lyase [General function prediction only]
Probab=99.57 E-value=1.2e-13 Score=105.91 Aligned_cols=120 Identities=26% Similarity=0.301 Sum_probs=89.0
Q ss_pred CCCceEEEEEeCChhHHHHHHHHhcCCeeecccCCCCCceEEEEeccCCCCcceEEEeeeccCCCccCCCCCeeEEEEEe
Q 020803 187 PEPLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGT 266 (321)
Q Consensus 187 ~~~l~hi~l~v~D~e~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~~~hi~f~v 266 (321)
+..+.|..|.|+|++++++||+++|||+........+..+..+.... ...+..+.-.. ...++....++.|.|
T Consensus 7 ~~~i~w~Ei~~~D~~ra~~FY~~vFgW~~~~~~~~~~~~y~~f~~~~--~~~gG~l~~~~-----~~~p~~~~~~iy~~v 79 (127)
T COG3324 7 KGTIVWFELPVSDLERAKAFYEKVFGWTFEDYFDMGEMRYAVFPADG--AGAGGGLMARP-----GSPPGGGGWVIYFAV 79 (127)
T ss_pred CCccEEEeeecCCHHHHHHHHHHhhCceecccccCCCceEEEEECCC--ccccceeccCC-----cCCCCCCCEEEEEec
Confidence 46789999999999999999999999998765433333333332221 11122221110 112225667899999
Q ss_pred CCHHHHHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEEEEEecc
Q 020803 267 DDVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDNV 314 (321)
Q Consensus 267 ~dl~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~ 314 (321)
+|++++.+++.++|.+++.++.+.|++ ++.+.+.||+||+|.|.++.
T Consensus 80 ~did~~l~rv~~~GG~V~~p~~~~p~~-G~~a~~~Dp~Gn~~~l~s~~ 126 (127)
T COG3324 80 DDIDATLERVVAAGGKVLRPKTEFPGG-GRIAHFVDPEGNRFGLWSPA 126 (127)
T ss_pred CChHHHHHHHHhcCCeEEecccccCCc-eEEEEEECCCCCEEEEeecC
Confidence 999999999999999999999988865 69999999999999998864
No 113
>cd07255 Glo_EDI_BRP_like_12 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.57 E-value=1.2e-13 Score=107.65 Aligned_cols=113 Identities=21% Similarity=0.309 Sum_probs=81.6
Q ss_pred eeceEEEEEeCCh----hhhhhccCCEEEEEEeCCCCceEEEEeeeCCCCcceEEEEEeecCC-CCcCCCCCceEEEEEe
Q 020803 62 FFPLIVVFPAGDG----RFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGV-DKYDIGTGFGHFGIAV 136 (321)
Q Consensus 62 ~~i~Hv~l~V~D~----~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~-~~~~~~~g~~hl~f~v 136 (321)
++|+||.|.|+|+ +||+++|||++.... + ..+++..++ ....+.+...... .......+..|++|.|
T Consensus 1 ~~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~~---~---~~~~l~~~~--~~~~l~l~~~~~~~~~~~~~~~~~hi~f~v 72 (125)
T cd07255 1 TRIGAVTLRVADLERSLAFYQDVLGLEVLERT---D---STAVLGTGG--KRPLLVLEEDPDAPPAPPGATGLYHFAILL 72 (125)
T ss_pred CEEEEEEEEECCHHHHHHHHHhccCcEEEEcC---C---CEEEEecCC--CeEEEEEEeCCCCCcccCCCCcEEEEEEEC
Confidence 4799999999999 999999999998762 1 134555432 2345555443222 1123445789999999
Q ss_pred CC---HHHHHHHHHHcCCeeeeCCcccCCCCeEEEEEECCCCcEEEEEecCC
Q 020803 137 DD---VAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGP 185 (321)
Q Consensus 137 ~d---l~~~~~~l~~~Gv~i~~~p~~~~~g~~~~~~~~DPdG~~iel~~~~~ 185 (321)
++ +++++++|+++|+++... ... +..+.+|+.|||||++|+....+
T Consensus 73 ~~~~~v~~~~~~l~~~g~~~~~~-~~~--~~~~~~~~~DPdG~~iEi~~~~~ 121 (125)
T cd07255 73 PSRADLAAALRRLIELGIPLVGA-SDH--LVSEALYLSDPEGNGIEIYADRP 121 (125)
T ss_pred CCHHHHHHHHHHHHHcCCceecc-ccc--cceeEEEEECCCCCEEEEEEecC
Confidence 74 899999999999987543 222 23467899999999999997654
No 114
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.56 E-value=9.1e-14 Score=106.52 Aligned_cols=106 Identities=23% Similarity=0.213 Sum_probs=73.5
Q ss_pred CceEEEEEeCChhHHHHHHHHhcCCeeecccCCCCCceEEEEeccCCCCcceEEEeeeccCCCccCCCCCeeE--EEEEe
Q 020803 189 PLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQ--IAIGT 266 (321)
Q Consensus 189 ~l~hi~l~v~D~e~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~~~h--i~f~v 266 (321)
+|+|+.|.|+|+++|.+||+ .|||++..+.. ... +...+ .....+.+... ...+..| +++.+
T Consensus 2 ~i~hv~l~v~d~~~s~~FY~-~lG~~~~~~~~-----~~~-~~~~~--~~~~~~~~~~~-------~~~~~~~~~~~~~~ 65 (112)
T cd08344 2 SIDHFALEVPDLEVARRFYE-AFGLDVREEGD-----GLE-LRTAG--NDHRWARLLEG-------ARKRLAYLSFGIFE 65 (112)
T ss_pred ceeEEEEecCCHHHHHHHHH-HhCCcEEeecC-----ceE-EEecC--CCceEEEeecC-------CCCceeeEEEEeEh
Confidence 68999999999999999997 69999865421 122 22211 12333444321 1223444 45556
Q ss_pred CCHHHHHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEEEEEec
Q 020803 267 DDVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDN 313 (321)
Q Consensus 267 ~dl~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~~ 313 (321)
+|+++++++++++|+++..++ .+++ .+.+||+|||||.|||...
T Consensus 66 ~d~~~~~~~l~~~Gi~~~~~~--~~~~-~~~~~~~DP~Gn~iel~~~ 109 (112)
T cd08344 66 DDFAAFARHLEAAGVALAAAP--PGAD-PDGVWFRDPDGNLLQVKVA 109 (112)
T ss_pred hhHHHHHHHHHHcCCceecCC--CcCC-CCEEEEECCCCCEEEEecC
Confidence 899999999999999987665 2333 3679999999999999854
No 115
>cd08346 PcpA_N_like N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The N-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.56 E-value=9e-14 Score=108.24 Aligned_cols=116 Identities=22% Similarity=0.256 Sum_probs=79.7
Q ss_pred eceEEEEEeCCh----hhhhhccCCEEEEEEeCCCC-ceEEEEeeeCCCCcceEEEEEeecCCCC--cCCCCCceEEEEE
Q 020803 63 FPLIVVFPAGDG----RFYTECLGMKLLRKRDIPEE-KYTNAFLGYGPEDSHFVIELTYNYGVDK--YDIGTGFGHFGIA 135 (321)
Q Consensus 63 ~i~Hv~l~V~D~----~FY~~vLG~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~l~l~~~~~~~~--~~~~~g~~hl~f~ 135 (321)
.|+||+|.|+|+ +||+++|||+...+....+. ....+++.......+..+++........ .....++.|++|.
T Consensus 1 ~i~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~hi~f~ 80 (126)
T cd08346 1 GLHHVTLITRDAQETVDFYTDVLGLRLVKKTVNQDDPGTYHLFFGDGLGSPGTLLTFFEWPDAGPKGRRGPGQIHHIAFS 80 (126)
T ss_pred CcccEEEEcCChhHhHHHHHHccCCEEeeeEeccCCCceEEEEEecCCCCCCCEEEEEecCCCCCCCCCCCCcEEEEEEE
Confidence 378999999999 99999999998877543221 1223334322112334566654322211 1233468899999
Q ss_pred eC---CHHHHHHHHHHcCCeeeeCCcccCCCCeEEEEEECCCCcEEEEE
Q 020803 136 VD---DVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELL 181 (321)
Q Consensus 136 v~---dl~~~~~~l~~~Gv~i~~~p~~~~~g~~~~~~~~DPdG~~iel~ 181 (321)
|+ |+++++++++++|+++...+. . ++.+.+||+||+||+||++
T Consensus 81 v~~~~~~~~~~~~~~~~g~~~~~~~~-~--~~~~~~~~~DP~G~~iE~~ 126 (126)
T cd08346 81 VPSEASLDAWRERLRAAGVPVSGVVD-H--FGERSIYFEDPDGLRLELT 126 (126)
T ss_pred cCCHHHHHHHHHHHHHcCCcccceEe-e--cceEEEEEECCCCCEEEeC
Confidence 98 479999999999999865432 2 2567889999999999984
No 116
>cd07240 ED_TypeI_classII_N N-terminal domain of type I, class II extradiol dioxygenases; non-catalytic domain. This family contains the N-terminal, non-catalytic, domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this fa
Probab=99.56 E-value=1e-13 Score=106.64 Aligned_cols=107 Identities=24% Similarity=0.333 Sum_probs=81.1
Q ss_pred eeceEEEEEeCCh----hhhhhccCCEEEEEEeCCCCceEEEEeeeCCCCcceEEEEEeecCCCCcCCCCCceEEEEEeC
Q 020803 62 FFPLIVVFPAGDG----RFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVD 137 (321)
Q Consensus 62 ~~i~Hv~l~V~D~----~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hl~f~v~ 137 (321)
++++|+.|.|+|+ +||+++|||++..... ..+++..+. ..+..+.+... ...++.|++|.|+
T Consensus 1 ~~l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~------~~~~~~~~~-~~~~~~~~~~~-------~~~~~~h~~~~v~ 66 (117)
T cd07240 1 RRIAYAELEVPDLERALEFYTDVLGLTVLDRDA------GSVYLRCSE-DDHHSLVLTEG-------DEPGVDALGFEVA 66 (117)
T ss_pred CceeEEEEecCCHHHHHHHHHhccCcEEEeecC------CeEEEecCC-CCcEEEEEEeC-------CCCCceeEEEEcC
Confidence 4799999999999 9999999999987632 235565542 22334444331 2247889999997
Q ss_pred ---CHHHHHHHHHHcCCeeeeCCcccCCCCeEEEEEECCCCcEEEEEec
Q 020803 138 ---DVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLER 183 (321)
Q Consensus 138 ---dl~~~~~~l~~~Gv~i~~~p~~~~~g~~~~~~~~DPdG~~iel~~~ 183 (321)
++++++++++++|+++...+...++ +++.+++.||+||.+|++..
T Consensus 67 ~~~~v~~~~~~l~~~g~~~~~~~~~~~~-~~~~~~~~DP~G~~ie~~~~ 114 (117)
T cd07240 67 SEEDLEALAAHLEAAGVAPEEASDPEPG-VGRGLRFQDPDGHLLELFVE 114 (117)
T ss_pred CHHHHHHHHHHHHHcCCceEEcCccCCC-CceEEEEECCCCCEEEEEEc
Confidence 5889999999999999887653433 45778999999999999965
No 117
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.56 E-value=9.7e-14 Score=107.81 Aligned_cols=113 Identities=27% Similarity=0.356 Sum_probs=81.0
Q ss_pred eeceEEEEEeCCh----hhhhhccCCEEEEEEeCCCCceEEEEeeeCCCCcceEEEEEeecCC---CCcCCCCCceEEEE
Q 020803 62 FFPLIVVFPAGDG----RFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGV---DKYDIGTGFGHFGI 134 (321)
Q Consensus 62 ~~i~Hv~l~V~D~----~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~---~~~~~~~g~~hl~f 134 (321)
.+++||.|.|+|+ +||+++|||++....... . ...+..++ ..+.+...... .....+.|..|++|
T Consensus 2 ~~l~hi~l~v~d~~~s~~Fy~~~lG~~~~~~~~~~--~--~~~~~~~~----~~~~l~~~~~~~~~~~~~~~~~~~hi~~ 73 (125)
T cd07253 2 KRIDHVVLTVADIEATLDFYTRVLGMEVVRFGEEV--G--RKALRFGS----QKINLHPVGGEFEPAAGSPGPGSDDLCL 73 (125)
T ss_pred cccceEEEEecCHHHHHHHHHHHhCceeecccccC--C--ceEEEeCC----EEEEEecCCCccCcCccCCCCCCceEEE
Confidence 4799999999999 999999999997653211 1 23344332 24555432211 11234468899999
Q ss_pred EeCC-HHHHHHHHHHcCCeeeeCCcccCC--CCeEEEEEECCCCcEEEEEe
Q 020803 135 AVDD-VAKTVELIKAKGGKVTREPGPVKG--GNTVIAFIEDPDGYKFELLE 182 (321)
Q Consensus 135 ~v~d-l~~~~~~l~~~Gv~i~~~p~~~~~--g~~~~~~~~DPdG~~iel~~ 182 (321)
.+++ +++++++|+++|+++...|....+ +.++.+||.|||||.+|+++
T Consensus 74 ~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~DPdG~~ve~~~ 124 (125)
T cd07253 74 ITEPPIDELVAHLEAHGVPIEEGPVPRTGARGPITSVYFRDPDGNLIELSN 124 (125)
T ss_pred EecccHHHHHHHHHHCCceeecCcccccCCCCCccEEEEECCCCCEEEeee
Confidence 9975 999999999999998877654322 24577999999999999986
No 118
>cd07245 Glo_EDI_BRP_like_9 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases.
Probab=99.55 E-value=4.8e-14 Score=107.32 Aligned_cols=109 Identities=26% Similarity=0.276 Sum_probs=78.7
Q ss_pred ceEEEEEeCCh----hhhhhccCCEEEEEEeCCCCceEEEEeeeCCCCcceEEEEEeecCCCC-cCCCCCceEEEEEeCC
Q 020803 64 PLIVVFPAGDG----RFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDK-YDIGTGFGHFGIAVDD 138 (321)
Q Consensus 64 i~Hv~l~V~D~----~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~-~~~~~g~~hl~f~v~d 138 (321)
|+|++|.|+|+ +||+++||+++..+...+ ...+++..++. ..+.+........ ...+.+..|++|.|+|
T Consensus 1 i~Hi~l~v~d~~~~~~FY~~~lG~~~~~~~~~~---~~~~~~~~~~~---~~i~l~~~~~~~~~~~~~~~~~~~~~~v~d 74 (114)
T cd07245 1 LDHVALRVPDLEASRAFYTDVLGLEEGPRPPFL---FPGAWLYAGDG---PQLHLIEEDPPDALPEGPGRDDHIAFRVDD 74 (114)
T ss_pred CCeEEEecCCHHHHHHHHHHccCCcccCcCCCC---CCceEEEeCCC---cEEEEEecCCCccccCCCcccceEEEEeCC
Confidence 68999999999 999999999987653322 12345554432 2455544322211 1234567899999999
Q ss_pred HHHHHHHHHHcCCeeeeCCcccCCCCeEEEEEECCCCcEEEE
Q 020803 139 VAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFEL 180 (321)
Q Consensus 139 l~~~~~~l~~~Gv~i~~~p~~~~~g~~~~~~~~DPdG~~iel 180 (321)
+++++++++++|+++...+.. .. +.+.+++.||+||.+||
T Consensus 75 ~~~~~~~l~~~g~~~~~~~~~-~~-~~~~~~~~DP~G~~iE~ 114 (114)
T cd07245 75 LDAFRARLKAAGVPYTESDVP-GD-GVRQLFVRDPDGNRIEL 114 (114)
T ss_pred HHHHHHHHHHcCCCcccccCC-CC-CccEEEEECCCCCEEeC
Confidence 999999999999998877654 22 44678999999999996
No 119
>cd09011 Glo_EDI_BRP_like_23 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.55 E-value=7.2e-14 Score=108.40 Aligned_cols=109 Identities=15% Similarity=0.114 Sum_probs=75.8
Q ss_pred eceEEEEEeCCh----hhhhhccCCEEEEEEeCCCCceEEEEeeeCCCCcceEEEEEe----ecCCCCcCCCCCceEEEE
Q 020803 63 FPLIVVFPAGDG----RFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTY----NYGVDKYDIGTGFGHFGI 134 (321)
Q Consensus 63 ~i~Hv~l~V~D~----~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~----~~~~~~~~~~~g~~hl~f 134 (321)
++.|+.|.|+|+ +||+++|||++..+.. . ... +..+ ..+.+.. .....+...+.+..|++|
T Consensus 2 ~~~~~~l~v~D~~~a~~FY~~~lG~~~~~~~~----~-~~~-~~~~-----~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 70 (120)
T cd09011 2 KFKNPLLVVKDIEKSKKFYEKVLGLKVVMDFG----E-NVT-FEGG-----FALQEGYSWLEGISKADIIEKSNNFELYF 70 (120)
T ss_pred EEEEEEEEECCHHHHHHHHHHhcCCEEeeccC----c-eEE-Eecc-----ceeccchhhhccCCcccccccCCceEEEE
Confidence 789999999999 9999999999864321 1 111 1111 1111110 001111123345579999
Q ss_pred EeCCHHHHHHHHHHcCC-eeeeCCcccCCCCeEEEEEECCCCcEEEEEec
Q 020803 135 AVDDVAKTVELIKAKGG-KVTREPGPVKGGNTVIAFIEDPDGYKFELLER 183 (321)
Q Consensus 135 ~v~dl~~~~~~l~~~Gv-~i~~~p~~~~~g~~~~~~~~DPdG~~iel~~~ 183 (321)
.|+|+++++++|+++|+ ++..+|...+. +.+.++|+|||||.|||.+.
T Consensus 71 ~v~dvd~~~~~l~~~g~~~~~~~~~~~~~-g~r~~~~~DPdGn~iei~~~ 119 (120)
T cd09011 71 EEEDFDAFLDKLKRYDNIEYVHPIKEHPW-GQRVVRFYDPDKHIIEVGES 119 (120)
T ss_pred EehhhHHHHHHHHhcCCcEEecCcccCCC-ccEEEEEECCCCCEEEEecc
Confidence 99999999999999985 68777776665 45789999999999999875
No 120
>cd07242 Glo_EDI_BRP_like_6 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.55 E-value=2.2e-13 Score=106.71 Aligned_cols=113 Identities=20% Similarity=0.292 Sum_probs=81.5
Q ss_pred eceEEEEEeCCh----hhhhhcc---CCEEEEEEeCCCCceEEEEeeeCCCCcceEEEEEeecCCCC---cCCCCCceEE
Q 020803 63 FPLIVVFPAGDG----RFYTECL---GMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDK---YDIGTGFGHF 132 (321)
Q Consensus 63 ~i~Hv~l~V~D~----~FY~~vL---G~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~---~~~~~g~~hl 132 (321)
+|+||+|.|+|+ +||+++| ||++..+.. ++ ..|... ..+..+.+.......+ ...+.|+.|+
T Consensus 1 ~i~Hv~i~v~d~~~~~~Fy~~~l~~~G~~~~~~~~--~~---~~~~~~---~~~~~i~l~~~~~~~~~~~~~~~~g~~hi 72 (128)
T cd07242 1 GIHHVELTVRDLERSRAFYDWLLGLLGFEEVKEWE--DG---RSWRAG---DGGTYLVLQQADGESAGRHDRRNPGLHHL 72 (128)
T ss_pred CCceEEEEeCCHHHHHHHHHHHHhhcCCEEEEeec--cC---ceEEec---CCceEEEEEecccCCCcccccCCcCeeEE
Confidence 489999999999 9999999 999987642 11 223322 1134555554332211 1234578999
Q ss_pred EEEeCC---HHHHHHHHHHcCCeeeeCCccc--CCCCeEEEEEECCCCcEEEEEec
Q 020803 133 GIAVDD---VAKTVELIKAKGGKVTREPGPV--KGGNTVIAFIEDPDGYKFELLER 183 (321)
Q Consensus 133 ~f~v~d---l~~~~~~l~~~Gv~i~~~p~~~--~~g~~~~~~~~DPdG~~iel~~~ 183 (321)
+|.|+| +++++++|+++|+.+...+... ..++.+.+|+.||+||++||+.+
T Consensus 73 a~~v~~~~d~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~DpdG~~ie~~~~ 128 (128)
T cd07242 73 AFRAPSREAVDELYARLAKRGAEILYAPREPYAGGPGYYALFFEDPDGIRLELVAP 128 (128)
T ss_pred EEEcCCHHHHHHHHHHHHHcCCeEecCCcccccCCCcEEEEEEECCCCcEEEEEeC
Confidence 999974 8899999999999998876542 23356789999999999999853
No 121
>PRK06724 hypothetical protein; Provisional
Probab=99.55 E-value=1.6e-13 Score=107.73 Aligned_cols=108 Identities=16% Similarity=0.114 Sum_probs=73.9
Q ss_pred eeeeceEEEEEeCCh----hhhhhcc---CCEEEEEEeCCCCceEEEEeeeCCCCcceEEEEEeecCCCCcCCCCCceEE
Q 020803 60 FSFFPLIVVFPAGDG----RFYTECL---GMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHF 132 (321)
Q Consensus 60 m~~~i~Hv~l~V~D~----~FY~~vL---G~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hl 132 (321)
|..+|+||+|.|+|+ +||+++| |++.........+. ..+.+..... ......|..|+
T Consensus 4 ~~~~i~Hv~l~V~Dle~s~~FY~~vlg~lg~~~~~~~~~~~g~--------------~~l~l~~~~~--~~~~~~g~~h~ 67 (128)
T PRK06724 4 LRAGIHHIEFWVANLEESISFYDMLFSIIGWRKLNEVAYSTGE--------------SEIYFKEVDE--EIVRTLGPRHI 67 (128)
T ss_pred cCcccCEEEEEeCCHHHHHHHHHHHHhhCCcEEeeeEeeeCCC--------------eeEEEecCCc--cccCCCCceeE
Confidence 477899999999999 9999966 66654221111111 1122211000 01123477899
Q ss_pred EEEe---CCHHHHHHHHHHcCCeeeeCCcccCC--CCeEEEEEECCCCcEEEEEec
Q 020803 133 GIAV---DDVAKTVELIKAKGGKVTREPGPVKG--GNTVIAFIEDPDGYKFELLER 183 (321)
Q Consensus 133 ~f~v---~dl~~~~~~l~~~Gv~i~~~p~~~~~--g~~~~~~~~DPdG~~iel~~~ 183 (321)
||.| +|+++++++|+++|+++..+|...+. .+.+.+||.|||||.||+...
T Consensus 68 af~v~~~~dvd~~~~~l~~~G~~~~~~p~~~~~~~~g~~~~~f~DPdG~~iEl~~~ 123 (128)
T PRK06724 68 CYQAINRKVVDEVAEFLSSTKIKIIRGPMEMNHYSEGYYTIDFYDPNGFIIEVAYT 123 (128)
T ss_pred EEecCChHHHHHHHHHHHHCCCEEecCCcccCCCCCCEEEEEEECCCCCEEEEEeC
Confidence 9998 67999999999999999877755332 234678999999999999866
No 122
>cd08356 Glo_EDI_BRP_like_17 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.54 E-value=1.1e-13 Score=106.42 Aligned_cols=104 Identities=22% Similarity=0.238 Sum_probs=72.6
Q ss_pred EEEEeCChhHHHHHHHHhcCCeeecccCCCCCceEEEEeccCCCCcceEEEeeeccCCCccCCCCCeeEEEEEeCCHHHH
Q 020803 193 VMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGTDDVYKT 272 (321)
Q Consensus 193 i~l~v~D~e~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~~~hi~f~v~dl~~~ 272 (321)
..|.|+|+++|++||++ |||++..... .+. ++..+ +..+.+..... ....+..+++|.|+|++++
T Consensus 5 ~~l~v~Dl~~s~~FY~~-LGf~~~~~~~----~~~--~l~~~----~~~l~l~~~~~----~~~~~~~~~~~~v~did~~ 69 (113)
T cd08356 5 PFIPAKDFAESKQFYQA-LGFELEWEND----NLA--YFRLG----NCAFYLQDYYV----KDWAENSMLHLEVDDLEAY 69 (113)
T ss_pred eccccccHHHHHHHHHH-hCCeeEecCC----CEE--EEEcC----CEEEEeecCCC----cccccCCEEEEEECCHHHH
Confidence 46889999999999987 9999976532 233 33322 33343332111 1112345899999999999
Q ss_pred HHHHHHCCCeee-----cCCccCCCCCceEEEEECCCCCEEEEEe
Q 020803 273 AEAIKLFGGKVT-----REPGPLPGINTKITACLDPDGWKTVFVD 312 (321)
Q Consensus 273 ~~~l~~~G~~~~-----~~p~~~~~~~~~~~~~~DPdG~~iel~~ 312 (321)
+++|+++|+++. .+|...+++ ++.++|+|||||+|+|.+
T Consensus 70 ~~~l~~~G~~~~~~~~~~~~~~~~~g-~r~f~~~DPdGn~~~~~~ 113 (113)
T cd08356 70 YEHIKALGLPKKFPGVKLPPITQPWW-GREFFLHDPSGVLWHIGQ 113 (113)
T ss_pred HHHHHHcCCcccccceecCccccCCC-cEEEEEECCCccEEEeeC
Confidence 999999998743 234444555 499999999999999864
No 123
>cd08348 BphC2-C3-RGP6_C_like The single-domain 2,3-dihydroxybiphenyl 1,2-dioxygenases (BphC, EC 1.13.11.39) from Rhodococcus globerulus P6, BphC2-RGP6 and BphC3-RGP6, and similar proteins. This subfamily contains Rhodococcus globerulus P6 BphC2-RGP6 and BphC3-RGP6, and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, yielding 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid. This is the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Most type I extradiol dioxygenases are activated by Fe(II). Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC2-RGP6 and BphC3-RGP6 are
Probab=99.53 E-value=4.4e-13 Score=105.94 Aligned_cols=116 Identities=27% Similarity=0.356 Sum_probs=81.5
Q ss_pred eceEEEEEeCCh----hhhhhccCCEEEEEEeCCCCceEEEEeeeCCCCcceEEEEEeecCCCCcCCCCCceEEEEEeCC
Q 020803 63 FPLIVVFPAGDG----RFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVDD 138 (321)
Q Consensus 63 ~i~Hv~l~V~D~----~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hl~f~v~d 138 (321)
+|+||+|.|+|+ +||+++|||++...... ...+++..+. ..+..+.+.............++.|++|.|+|
T Consensus 1 ~i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~~----~~~~~~~~~~-~~~~~l~l~~~~~~~~~~~~~~~~h~~f~v~~ 75 (134)
T cd08348 1 RLSHVVLYVRDLEAMVRFYRDVLGFTVTDRGPL----GGLVFLSRDP-DEHHQIALITGRPAAPPPGPAGLNHIAFEVDS 75 (134)
T ss_pred CeeEEEEEecCHHHHHHHHHHhcCCEEEeeccC----CcEEEEEecC-CCceEEEEEecCCCCCCCCCCCceEEEEEeCC
Confidence 589999999999 99999999998765321 1245555431 12344555443222111234578899999997
Q ss_pred HH---HHHHHHHHcCCeeeeCCcccCCCCeEEEEEECCCCcEEEEEecCCC
Q 020803 139 VA---KTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGPT 186 (321)
Q Consensus 139 l~---~~~~~l~~~Gv~i~~~p~~~~~g~~~~~~~~DPdG~~iel~~~~~~ 186 (321)
++ +++++|.++|+++...+. . +.++.+|+.||+||.+|++...+.
T Consensus 76 ~~~v~~~~~~l~~~G~~~~~~~~-~--~~~~~~~~~DP~G~~ie~~~~~~~ 123 (134)
T cd08348 76 LDDLRDLYERLRAAGITPVWPVD-H--GNAWSIYFRDPDGNRLELFVDTPW 123 (134)
T ss_pred HHHHHHHHHHHHHCCCCccccCC-C--CceeEEEEECCCCCEEEEEEcCCC
Confidence 55 588999999999876532 2 245778999999999999987653
No 124
>cd07251 Glo_EDI_BRP_like_10 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.53 E-value=2.5e-13 Score=105.09 Aligned_cols=110 Identities=21% Similarity=0.196 Sum_probs=77.0
Q ss_pred EEEEeCChhHHHHHHHHhcCCeeecccCCCCCceEEEEeccCCCCcceEEEeeeccCC------CccCCCCCeeEEEEEe
Q 020803 193 VMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGV------TDYDKGNAYAQIAIGT 266 (321)
Q Consensus 193 i~l~v~D~e~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~------~~~~~~~~~~hi~f~v 266 (321)
|.|.|+|+++|.+||+++|||++..+. ...+. ++..+ +..+++...... .....+.+..|++|.+
T Consensus 2 i~l~v~d~~~a~~FY~~~lg~~~~~~~---~~~~~--~~~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (121)
T cd07251 2 ITLGVADLARSRAFYEALLGWKPSADS---NDGVA--FFQLG----GLVLALFPREELAKDAGVPVPPPGFSGITLAHNV 72 (121)
T ss_pred eeEeeCCHHHHHHHHHHhcCceecccC---CCceE--EEEcC----CeEEEEecchhhhhhcCCCCCCCCccceEEEEEc
Confidence 689999999999999999999986551 12222 23321 345555432211 0011222344566654
Q ss_pred ---CCHHHHHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEEEEEe
Q 020803 267 ---DDVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVD 312 (321)
Q Consensus 267 ---~dl~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~ 312 (321)
+|+++++++++++|+++..+|...+++ ++.++++||+||+|||..
T Consensus 73 ~~~~d~~~~~~~l~~~G~~~~~~~~~~~~g-~~~~~~~DP~Gn~iei~~ 120 (121)
T cd07251 73 RSEEEVDAVLARAAAAGATIVKPPQDVFWG-GYSGYFADPDGHLWEVAH 120 (121)
T ss_pred CCHHHHHHHHHHHHhCCCEEecCCccCCCC-ceEEEEECCCCCEEEEee
Confidence 689999999999999998887766665 589999999999999975
No 125
>cd08355 Glo_EDI_BRP_like_14 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.52 E-value=1.1e-12 Score=101.87 Aligned_cols=112 Identities=20% Similarity=0.183 Sum_probs=80.1
Q ss_pred EEEEEeCCh----hhhhhccCCEEEEEEeCCCCceEEEEeeeCCCCcceEEEEEeecCCCC----cCCCCCceEEEEEeC
Q 020803 66 IVVFPAGDG----RFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDK----YDIGTGFGHFGIAVD 137 (321)
Q Consensus 66 Hv~l~V~D~----~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~----~~~~~g~~hl~f~v~ 137 (321)
+..|.|+|+ +||+++||+++......+++....+.+..++ ..+.+........ .....+..|++|.|+
T Consensus 2 ~p~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~ 77 (122)
T cd08355 2 WPTLRYRDAAAAIDWLTDAFGFEERLVVPDDDGGVAHAELRFGD----GGVMVGSVRDDYRASSARAGGAGTQGVYVVVD 77 (122)
T ss_pred eEEEEECCHHHHHHHHHHhcCCEEEEEEeCCCCcEEEEEEEECC----EEEEEecCCCcccccccccCCCceEEEEEEEC
Confidence 356899999 9999999999987654444444444555432 1233332221111 123345678999999
Q ss_pred CHHHHHHHHHHcCCeeeeCCcccCCCCeEEEEEECCCCcEEEEEe
Q 020803 138 DVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLE 182 (321)
Q Consensus 138 dl~~~~~~l~~~Gv~i~~~p~~~~~g~~~~~~~~DPdG~~iel~~ 182 (321)
|+++++++++++|+++..+|...+.| .+.++++|||||.|+|.+
T Consensus 78 d~d~~~~~l~~~G~~v~~~~~~~~~g-~~~~~~~DPdG~~~~l~~ 121 (122)
T cd08355 78 DVDAHYERARAAGAEILREPTDTPYG-SREFTARDPEGNLWTFGT 121 (122)
T ss_pred CHHHHHHHHHHCCCEEeeCccccCCC-cEEEEEECCCCCEEEEec
Confidence 99999999999999999888766653 577899999999999974
No 126
>TIGR03211 catechol_2_3 catechol 2,3 dioxygenase. Members of this family all are enzymes active as catechol 2,3 dioxygenase (1.13.11.2), although some members have highly significant activity on catechol derivatives such as 3-methylcatechol, 3-chlorocatechol, and 4-chlorocatechol (see Mars, et al.). This enzyme is also called metapyrocatechase, as it performs a meta-cleavage (an extradiol ring cleavage), in contrast to the ortho-cleavage (intradiol ring cleavage)performed by catechol 1,2-dioxygenase (EC 1.13.11.1), also called pyrocatechase.
Probab=99.52 E-value=2e-13 Score=123.20 Aligned_cols=115 Identities=17% Similarity=0.182 Sum_probs=82.4
Q ss_pred CCceEEEEEeCChhHHHHHHHHhcCCeeecccCCCCCceEEEEeccCCCCcceEEEeeeccCCCccCCCCCeeEEEEEeC
Q 020803 188 EPLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGTD 267 (321)
Q Consensus 188 ~~l~hi~l~v~D~e~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~~~hi~f~v~ 267 (321)
.+++|+.|.|+|++++++||+++|||++..+... . +++.......+..+.+.. ....++.|++|.|+
T Consensus 3 ~~i~Hi~l~V~Dle~s~~FY~~~LG~~~~~~~~~-----~-~~~~~~~~~~~~~~~l~~-------~~~~g~~hiaf~v~ 69 (303)
T TIGR03211 3 MRLGHVELRVLDLEESLKHYTDVLGLEETGRDGQ-----R-VYLKAWDEWDHYSVILTE-------ADTAGLDHMAFKVE 69 (303)
T ss_pred ceeeEEEEEeCCHHHHHHHHHHhcCCEEeeecCc-----e-EEEEeccccccceEeecc-------CCCCceeEEEEEeC
Confidence 4689999999999999999999999998754321 1 122211111133343332 12346899999997
Q ss_pred ---CHHHHHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEEEEEeccc
Q 020803 268 ---DVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDNVD 315 (321)
Q Consensus 268 ---dl~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~~ 315 (321)
|+++++++|+++|+++...|.....+.++.+||+|||||.|||++...
T Consensus 70 ~~~dl~~~~~~l~~~G~~~~~~~~~~~~~~g~~~~~~DPdG~~iEl~~~~~ 120 (303)
T TIGR03211 70 SEADLERLVKRLEAYGVGTGWIPAGELPGVGRRVRFTLPSGHTMELYAEKE 120 (303)
T ss_pred CHHHHHHHHHHHHHcCCCeeeccCCCCCCcceEEEEECCCCCEEEEEEccc
Confidence 799999999999999876554222222578999999999999998654
No 127
>cd07267 THT_Oxygenase_N N-terminal domain of 2,4,5-trihydroxytoluene (THT) oxygenase. This subfamily contains the N-terminal, non-catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=99.51 E-value=4.7e-13 Score=102.73 Aligned_cols=105 Identities=19% Similarity=0.211 Sum_probs=75.9
Q ss_pred eeceEEEEEeCCh----hhhhhccCCEEEEEEeCCCCceEEEEeeeCCCCcceEEEEEeecCCCCcCCCCCceEEEEEeC
Q 020803 62 FFPLIVVFPAGDG----RFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVD 137 (321)
Q Consensus 62 ~~i~Hv~l~V~D~----~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hl~f~v~ 137 (321)
.+|+||.|.|+|+ +||++ |||+...+. ++ .+|+..+. .....+.+.. ...+++.|++|.|+
T Consensus 2 ~~l~hv~l~v~Dl~~s~~FY~~-lGl~~~~~~---~~---~~~~~~~~-~~~~~~~~~~-------~~~~~~~~~af~v~ 66 (113)
T cd07267 2 TDIAHVRFEHPDLDKAERFLTD-FGLEVAART---DD---ELYYRGYG-TDPFVYVARK-------GEKARFVGAAFEAA 66 (113)
T ss_pred cEEEEEEEccCCHHHHHHHHHH-cCCEEEEec---CC---eEEEecCC-CccEEEEccc-------CCcCcccEEEEEEC
Confidence 5799999999999 99999 999986552 11 24554322 1222222211 12357889999999
Q ss_pred CHHHHHHHHHHcCCeeeeCCcccCCCCeEEEEEECCCCcEEEEEec
Q 020803 138 DVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLER 183 (321)
Q Consensus 138 dl~~~~~~l~~~Gv~i~~~p~~~~~g~~~~~~~~DPdG~~iel~~~ 183 (321)
|.+++.+.+++.|+.+...+. .+ ++++.+||.|||||.|||+..
T Consensus 67 ~~~~~~~~~~~~g~~~~~~~~-~~-~~~~~~~~~DPdG~~iEl~~~ 110 (113)
T cd07267 67 SRADLEKAAALPGASVIDDLE-AP-GGGKRVTLTDPDGFPVELVYG 110 (113)
T ss_pred CHHHHHHHHHcCCCeeecCCC-CC-CCceEEEEECCCCCEEEEEec
Confidence 999999999999998765432 23 345789999999999999865
No 128
>cd08362 BphC5-RrK37_N_like N-terminal, non-catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Rhodococcus rhodochrous K37, and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the N-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dioxyge
Probab=99.51 E-value=4.3e-13 Score=103.76 Aligned_cols=109 Identities=24% Similarity=0.288 Sum_probs=78.4
Q ss_pred eeceEEEEEeCCh----hhhhhccCCEEEEEEeCCCCceEEEEeeeCCCCcceEEEEEeecCCCCcCCCCCceEEEEEeC
Q 020803 62 FFPLIVVFPAGDG----RFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVD 137 (321)
Q Consensus 62 ~~i~Hv~l~V~D~----~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hl~f~v~ 137 (321)
.+|+|+.|.|+|+ +||+++|||+...... . .+++..+. .....+.+.. ...+++.|++|.|+
T Consensus 2 ~~i~hv~l~v~d~~~s~~FY~~~lG~~~~~~~~----~--~~~~~~~~-~~~~~~~~~~-------~~~~~~~~~~~~v~ 67 (120)
T cd08362 2 TALRGVGLGVPDLAAAAAFYREVWGLSVVAEDD----G--IVYLRATG-SEHHILRLRR-------SDRNRLDVVSFSVA 67 (120)
T ss_pred ceeeEEEEecCCHHHHHHHHHhCcCcEEEEecC----C--EEEEECCC-CccEEEEecc-------CCCCCCceEEEEeC
Confidence 4799999999999 9999999999875422 1 24454322 2223333321 12236789999994
Q ss_pred ---CHHHHHHHHHHcCCeeeeCCcccC-CCCeEEEEEECCCCcEEEEEecC
Q 020803 138 ---DVAKTVELIKAKGGKVTREPGPVK-GGNTVIAFIEDPDGYKFELLERG 184 (321)
Q Consensus 138 ---dl~~~~~~l~~~Gv~i~~~p~~~~-~g~~~~~~~~DPdG~~iel~~~~ 184 (321)
++++++++++++|+++...|.... .++++.++|.||+||.+||+...
T Consensus 68 ~~~~l~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~DP~G~~iel~~~~ 118 (120)
T cd08362 68 SRADVDALARQVAARGGTVLSEPGATDDPGGGYGFRFFDPDGRLIEFSADV 118 (120)
T ss_pred CHHHHHHHHHHHHHcCCceecCCcccCCCCCceEEEEECCCCCEEEEEecc
Confidence 689999999999999887654332 22456789999999999999764
No 129
>TIGR02295 HpaD 3,4-dihydroxyphenylacetate 2,3-dioxygenase. The enzyme from Bacillus brevis contains manganese.
Probab=99.51 E-value=4e-13 Score=120.72 Aligned_cols=115 Identities=25% Similarity=0.344 Sum_probs=83.2
Q ss_pred eeeceEEEEEeCCh----hhhhhccCCEEEEEEeCCCCceEEEEeeeCCCCcceEEEEEeecCCCCcCCCCCceEEEEEe
Q 020803 61 SFFPLIVVFPAGDG----RFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAV 136 (321)
Q Consensus 61 ~~~i~Hv~l~V~D~----~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hl~f~v 136 (321)
+++|+||+|.|+|+ +||+++|||++..+...+.+.....|+..+. ....+.+.. ..+.+++|+||.|
T Consensus 134 ~~~i~Hv~l~v~dl~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-------~~~~~~~Hiaf~v 204 (294)
T TIGR02295 134 PVRLDHFNVFVPDVQRALRFYKEELGFRVTEYTEDDEGNLAAAWLHRKG--GVHDIALTN-------GNGPRLHHIAYWV 204 (294)
T ss_pred ceeeeeEEEEeCCHHHHHHHHHHhcCCEEEEEeccCCCcEEEEEEecCC--CcCceEeec-------CCCCceeeEEEEc
Confidence 67999999999999 9999999999877654433433455654332 122333321 1246899999999
Q ss_pred CC---HHHHHHHHHHcCCe--eeeCCcccCCCCeEEEEEECCCCcEEEEEecC
Q 020803 137 DD---VAKTVELIKAKGGK--VTREPGPVKGGNTVIAFIEDPDGYKFELLERG 184 (321)
Q Consensus 137 ~d---l~~~~~~l~~~Gv~--i~~~p~~~~~g~~~~~~~~DPdG~~iel~~~~ 184 (321)
+| ++++.++|+++|++ +...|..++.+...++|++||+||+||++...
T Consensus 205 ~d~~~v~~~~~~l~~~G~~~~~~~~p~~~~~~~~~~~y~~DP~G~~iEl~~~~ 257 (294)
T TIGR02295 205 HDPLNIIKACDILASAGLSDSIERGPGRHGVSNAFFLYLRDPDGHRIELYTGD 257 (294)
T ss_pred CCHHHHHHHHHHHHhCCCCcccccCCccCCCCcceEEEEECCCCCEEEEEecc
Confidence 98 55578999999988 65566544433456799999999999999743
No 130
>cd07246 Glo_EDI_BRP_like_8 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.50 E-value=1.5e-12 Score=100.88 Aligned_cols=111 Identities=19% Similarity=0.191 Sum_probs=80.8
Q ss_pred EEEEeCCh----hhhhhccCCEEEEEEeCCCCceEEEEeeeCCCCcceEEEEEeecCCC--CcCCCCCceEEEEEeCCHH
Q 020803 67 VVFPAGDG----RFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVD--KYDIGTGFGHFGIAVDDVA 140 (321)
Q Consensus 67 v~l~V~D~----~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~--~~~~~~g~~hl~f~v~dl~ 140 (321)
+.|.|+|+ +||+++||+++......+++....+.+..+. ..+.+....... ....+.+..|++|.|+|++
T Consensus 5 ~~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~d~~ 80 (122)
T cd07246 5 PYLIVRDAAAAIDFYKKAFGAEELERMPDDDGRVMHAELRIGD----SVLMLADEFPEHGSPASWGGTPVSLHLYVEDVD 80 (122)
T ss_pred EEEEECCHHHHHHHHHHhhCCEEEEEEeCCCCCEEEEEEEECC----EEEEEecCCcccCCCCCCCCceEEEEEEeCCHH
Confidence 45899999 9999999999987765444444445555432 234444322110 1123345679999999999
Q ss_pred HHHHHHHHcCCeeeeCCcccCCCCeEEEEEECCCCcEEEEEe
Q 020803 141 KTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLE 182 (321)
Q Consensus 141 ~~~~~l~~~Gv~i~~~p~~~~~g~~~~~~~~DPdG~~iel~~ 182 (321)
++++++.+.|+++..+|...+. +.+.++++||+||.|+|.+
T Consensus 81 ~~~~~l~~~G~~~~~~~~~~~~-g~~~~~~~DP~G~~~~l~~ 121 (122)
T cd07246 81 ATFARAVAAGATSVMPPADQFW-GDRYGGVRDPFGHRWWIAT 121 (122)
T ss_pred HHHHHHHHCCCeEecCcccccc-cceEEEEECCCCCEEEEec
Confidence 9999999999999888765554 4678999999999999986
No 131
>KOG2944 consensus Glyoxalase [Carbohydrate transport and metabolism]
Probab=99.50 E-value=4e-13 Score=104.45 Aligned_cols=118 Identities=24% Similarity=0.264 Sum_probs=81.1
Q ss_pred CCceEEEEEeCChhHHHHHHHHhcCCeeecccCCCCCceEEEEeccCCCCcceEEEeeeccCCCccC--------C-CCC
Q 020803 188 EPLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYD--------K-GNA 258 (321)
Q Consensus 188 ~~l~hi~l~v~D~e~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~--------~-~~~ 258 (321)
+++.|+.|.+++..+...||...||++.......+..... ++... ....+||.++.+..... . +.|
T Consensus 41 tr~~gm~l~~~~~fke~~Fsl~fL~~~~~~~vP~~~~~~~-v~~~~----~~~~~ELthn~Gtes~~~~~~~ngN~~prG 115 (170)
T KOG2944|consen 41 TRVNGMALLVPDDFKEAKFSLYFLGAEVSEDVPKPEHGVS-VFVFS----RNAKLELTHNWGTESPPDQAYLNGNKEPRG 115 (170)
T ss_pred hhhccceeechhhhhHhhhHHHhhcccccccCccCCCCCc-eEEec----ccCceeeecCCCCCCCcchhhcCCCCCCCc
Confidence 4566677777777777777777777765443332222222 22221 15678888876654321 1 238
Q ss_pred eeEEEEEeCCHHHHHHHHHHCCCeeecCCccCCCCC-ceEEEEECCCCCEEEEEec
Q 020803 259 YAQIAIGTDDVYKTAEAIKLFGGKVTREPGPLPGIN-TKITACLDPDGWKTVFVDN 313 (321)
Q Consensus 259 ~~hi~f~v~dl~~~~~~l~~~G~~~~~~p~~~~~~~-~~~~~~~DPdG~~iel~~~ 313 (321)
.+||||+|+|+++++.+|++.|+++...|.. |. -..+|+.||||++||+...
T Consensus 116 fgHIci~V~di~sac~~lkekGV~f~Kk~~d---Gk~K~iaF~~dpDgywiei~~~ 168 (170)
T KOG2944|consen 116 FGHICIEVDDINSACERLKEKGVRFKKKLKD---GKMKPIAFLHDPDGYWIEIELE 168 (170)
T ss_pred cceEEEEeCCHHHHHHHHHHhCceeeecCCC---ccccceeEEECCCCCeEEEeec
Confidence 9999999999999999999999998776532 22 2679999999999999865
No 132
>cd08359 Glo_EDI_BRP_like_22 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.48 E-value=7.4e-13 Score=102.33 Aligned_cols=107 Identities=18% Similarity=0.193 Sum_probs=75.5
Q ss_pred EEEEEeCCh----hhhhhccCCEEEEEEeCCCCceEEEEeeeCCCCcceEEEEEeecCC--C---CcCCCCCceEEEEEe
Q 020803 66 IVVFPAGDG----RFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGV--D---KYDIGTGFGHFGIAV 136 (321)
Q Consensus 66 Hv~l~V~D~----~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~--~---~~~~~~g~~hl~f~v 136 (321)
++.|.|+|+ +||+++|||++.... .. .+.+..++ ....+.+...... + ....+.++ |++|.|
T Consensus 4 ~~~l~v~D~~~s~~FY~~~lG~~~~~~~----~~--~~~~~~~~--~~~~l~l~~~~~~~~~~~~~~~~~~~~-~~~~~v 74 (119)
T cd08359 4 YPVIVTDDLAETADFYVRHFGFTVVFDS----DW--YVSLRSPD--GGVELAFMLPGHETVPAAQYQFQGQGL-ILNFEV 74 (119)
T ss_pred eeEEEECCHHHHHHHHHHhhCcEEEecc----Cc--EEEEecCC--CceEEEEccCCCCCCcchhcccCCceE-EEEEEE
Confidence 678999999 999999999987641 11 23343322 1234444321111 1 11223344 899999
Q ss_pred CCHHHHHHHHHHcCCeeeeCCcccCCCCeEEEEEECCCCcEEEEEe
Q 020803 137 DDVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLE 182 (321)
Q Consensus 137 ~dl~~~~~~l~~~Gv~i~~~p~~~~~g~~~~~~~~DPdG~~iel~~ 182 (321)
+|+++++++++++|+++..+|...+. +.+.++++||+||.|||+|
T Consensus 75 ~did~~~~~l~~~G~~~~~~~~~~~~-g~~~~~~~DP~G~~ie~~~ 119 (119)
T cd08359 75 DDVDAEYERLKAEGLPIVLPLRDEPW-GQRHFIVRDPNGVLIDIVQ 119 (119)
T ss_pred CCHHHHHHHHHhcCCCeeeccccCCC-cceEEEEECCCCCEEEEEC
Confidence 99999999999999998887766654 4578899999999999985
No 133
>cd07264 Glo_EDI_BRP_like_15 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.48 E-value=1.2e-12 Score=102.04 Aligned_cols=111 Identities=18% Similarity=0.231 Sum_probs=74.8
Q ss_pred ceEEEEEeCCh----hhhhhccCCEEEEEEeCCCCceEEEEeeeCCCCcceEEEEEeec--------C--CCCcCCCCCc
Q 020803 64 PLIVVFPAGDG----RFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNY--------G--VDKYDIGTGF 129 (321)
Q Consensus 64 i~Hv~l~V~D~----~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~--------~--~~~~~~~~g~ 129 (321)
+.|+.|.|+|+ +||+++|||+...... ++.+.. +..+ ...+.+.... . ........+.
T Consensus 1 ~~~~~l~v~D~~~s~~FY~~~lG~~~~~~~~--~~~~~~--~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (125)
T cd07264 1 FGYTIIYVEDVEKTLEFYERAFGFERRFLHE--SGDYGE--LETG----ETTLAFASHDLAESNLKGGFVKADPAQPPAG 72 (125)
T ss_pred CceEEEEEcCHHHHHHHHHHhhCCeEEeecC--CCcEEE--ecCC----cEEEEEEcccccccccccCccCCccccCCCc
Confidence 57999999999 9999999999865422 222211 2111 1111111100 0 0011112234
Q ss_pred eEEEEEeCCHHHHHHHHHHcCCeeeeCCcccCCCCeEEEEEECCCCcEEEEEec
Q 020803 130 GHFGIAVDDVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLER 183 (321)
Q Consensus 130 ~hl~f~v~dl~~~~~~l~~~Gv~i~~~p~~~~~g~~~~~~~~DPdG~~iel~~~ 183 (321)
.|++|.|+|+++++++++++|+++..+|...+. +.+.++++|||||.+|++++
T Consensus 73 ~~~~~~v~di~~~~~~l~~~G~~~~~~~~~~~~-g~~~~~~~DPdG~~~~~~~~ 125 (125)
T cd07264 73 FEIAFVTDDVAAAFARAVEAGAVLVSEPKEKPW-GQTVAYVRDINGFLIELCSP 125 (125)
T ss_pred EEEEEEcCCHHHHHHHHHHcCCEeccCCccCCC-CcEEEEEECCCCCEEEEecC
Confidence 589999999999999999999999888766665 45678999999999999864
No 134
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=99.47 E-value=1e-12 Score=99.60 Aligned_cols=104 Identities=25% Similarity=0.309 Sum_probs=72.1
Q ss_pred EEeCCh----hhhhhccCCEEEEEEeCCCCceEEEEeeeCCCCcceEEEEEeecCCCCcCCCCCceEEEEEeCCHHHHHH
Q 020803 69 FPAGDG----RFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVDDVAKTVE 144 (321)
Q Consensus 69 l~V~D~----~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hl~f~v~dl~~~~~ 144 (321)
|.|+|+ +||+++|||++....+ .+ +.+..+.........+..... ......+..|++|.|+|++++++
T Consensus 1 l~v~d~~~a~~FY~~~lg~~~~~~~~----~~--~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~v~dv~~~~~ 72 (108)
T PF12681_consen 1 LPVSDLEAAAAFYEDVLGFEVVFDDP----DY--VDFSLGFRFHDGVIEFLQFPD--PPGPPGGGFHLCFEVEDVDALYE 72 (108)
T ss_dssp EEESSHHHHHHHHHHTTTSEEEEEET----SE--EEEEETEEEEEEEEEEEEEES--SSSSSSSEEEEEEEESHHHHHHH
T ss_pred CccCCHHHHHHHHHHhcCCEEEEeCC----Ce--EEEEeccchhhhhHHHccCCc--cccCCCceeEEEEEEcCHHHHHH
Confidence 689999 9999999999988432 12 223332111111222322211 22345577899999999999999
Q ss_pred HHHHcCCeeeeCCcccCCCCeEEEEEECCCCcEEEEE
Q 020803 145 LIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELL 181 (321)
Q Consensus 145 ~l~~~Gv~i~~~p~~~~~g~~~~~~~~DPdG~~iel~ 181 (321)
+++++|+++..+|...+. +.+.+++.|||||.|||+
T Consensus 73 ~l~~~G~~~~~~~~~~~~-g~~~~~~~DPdG~~ie~~ 108 (108)
T PF12681_consen 73 RLKELGAEIVTEPRDDPW-GQRSFYFIDPDGNRIEFC 108 (108)
T ss_dssp HHHHTTSEEEEEEEEETT-SEEEEEEE-TTS-EEEEE
T ss_pred HHHHCCCeEeeCCEEcCC-CeEEEEEECCCCCEEEeC
Confidence 999999999888877655 468899999999999986
No 135
>cd07244 FosA FosA, a Fosfomycin resistance protein, catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. This subfamily family contains FosA, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosA, catalyzes the addition of glutathione to the antibiotic fosfomycin, (1R,2S)-epoxypropylphosphonic acid, making it inactive. FosA is a Mn(II) dependent enzyme. It is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.47 E-value=9.4e-13 Score=102.30 Aligned_cols=105 Identities=28% Similarity=0.392 Sum_probs=74.9
Q ss_pred eceEEEEEeCCh----hhhhhccCCEEEEEEeCCCCceEEEEeeeCCCCcceEEEEEeecCCCCcCCCCCceEEEEEe--
Q 020803 63 FPLIVVFPAGDG----RFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAV-- 136 (321)
Q Consensus 63 ~i~Hv~l~V~D~----~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hl~f~v-- 136 (321)
+|+|+.|.|+|+ +||+++|||++....+ + .+++..+ . ..+.+...... ...++..|++|.+
T Consensus 1 ~i~hv~l~v~d~~~~~~FY~~vLG~~~~~~~~--~----~~~~~~~--~--~~~~l~~~~~~---~~~~~~~hi~f~v~~ 67 (121)
T cd07244 1 GINHITLAVSDLERSVAFYVDLLGFKLHVRWD--K----GAYLEAG--D--LWLCLSVDANV---GPAKDYTHYAFSVSE 67 (121)
T ss_pred CcceEEEEECCHHHHHHHHHHhcCCEEEEecC--C----ceEEecC--C--EEEEEecCCCC---CCCCCeeeEEEEeCH
Confidence 479999999999 9999999999876532 1 2344433 1 22233221111 2245678999999
Q ss_pred CCHHHHHHHHHHcCCeeeeCCcccCCCCeEEEEEECCCCcEEEEEecC
Q 020803 137 DDVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERG 184 (321)
Q Consensus 137 ~dl~~~~~~l~~~Gv~i~~~p~~~~~g~~~~~~~~DPdG~~iel~~~~ 184 (321)
+|+++++++++++|+++...+.. .+..+||.|||||.+|+++..
T Consensus 68 ~dl~~~~~~l~~~G~~~~~~~~~----~~~~~~f~DPdG~~ie~~~~~ 111 (121)
T cd07244 68 EDFASLKEKLRQAGVKEWKENTS----EGDSFYFLDPDGHKLELHVGS 111 (121)
T ss_pred HHHHHHHHHHHHcCCcccCCCCC----CccEEEEECCCCCEEEEEeCC
Confidence 47999999999999998655432 235799999999999999754
No 136
>TIGR03213 23dbph12diox 2,3-dihydroxybiphenyl 1,2-dioxygenase. Members of this protein family all have activity as 2,3-dihydroxybiphenyl 1,2-dioxygenase, the third enzyme of a pathway for biphenyl degradation. Many of the extradiol ring-cleaving dioxygenases, to which these proteins belong, act on a range of related substrates. Note that some members of this family may be found operons for toluene or naphthalene degradation, where other activities of the same enzyme may be more significant; the trusted cutoff for this model is set relatively high to exclude most such instances.
Probab=99.45 E-value=1.5e-12 Score=116.65 Aligned_cols=113 Identities=22% Similarity=0.306 Sum_probs=82.2
Q ss_pred eeeceEEEEEeCCh----hhhhhccCCEEEEEEeCCC--C-ceEEEEeeeCCCCcceEEEEEeecCCCCcCCCCCceEEE
Q 020803 61 SFFPLIVVFPAGDG----RFYTECLGMKLLRKRDIPE--E-KYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFG 133 (321)
Q Consensus 61 ~~~i~Hv~l~V~D~----~FY~~vLG~~~~~~~~~~~--~-~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hl~ 133 (321)
+.+|+||+|.|+|+ +||+++|||++..+...+. + .+..+|+.+++. +..+.+... ....+++|+|
T Consensus 140 ~~~l~Hv~l~v~Dle~s~~FY~~~LGf~~~~~~~~~~~~g~~~~~~~l~~~~~--~~~~~l~~~------~~~~~~~Hia 211 (286)
T TIGR03213 140 DQGLGHIVLRVPDVDAALAFYTEVLGFQLSDVIDLPAGPGVTVRPYFLHCNER--HHSLAFAAG------PSEKRLNHLM 211 (286)
T ss_pred CccccEEEEEcCCHHHHHHHHHHccCCeEEEeEcccCCCCCcceEEEEEECCC--cceEEEecC------CCCCceEEEE
Confidence 56899999999999 9999999999876532211 1 124567766432 333333211 1345799999
Q ss_pred EEeCCHHH---HHHHHHHcCCeeeeCCcccCCCCeEEEEEECCCCcEEEEEe
Q 020803 134 IAVDDVAK---TVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLE 182 (321)
Q Consensus 134 f~v~dl~~---~~~~l~~~Gv~i~~~p~~~~~g~~~~~~~~DPdG~~iel~~ 182 (321)
|.|+|+++ ++++|+++|+ +...+..++.+...++|++||+||+||+..
T Consensus 212 f~v~d~~~v~~~~~~l~~~G~-~~~~~~r~~~~~~~~~y~~DP~G~~iE~~~ 262 (286)
T TIGR03213 212 LEVDTLDDVGLALDRVDADGI-VASTLGRHTNDHMVSFYVATPSGWLVEYGW 262 (286)
T ss_pred EEcCCHHHHHHHHHHHHHCCC-EEecCCcCCCCCeEEEEEECCCCcEEEeec
Confidence 99998666 8999999999 555555554456678999999999999985
No 137
>cd07238 Glo_EDI_BRP_like_5 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structure of this family is a that of a strand-swapped dimer.
Probab=99.45 E-value=2.7e-12 Score=98.10 Aligned_cols=105 Identities=22% Similarity=0.288 Sum_probs=75.0
Q ss_pred EEEEEeCCh----hhhhhccCCEEEEEEeCCCCceEEEEeeeCCCCcceEEEEEeecCCCCcCCCCCceEEEEEeCCHHH
Q 020803 66 IVVFPAGDG----RFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVDDVAK 141 (321)
Q Consensus 66 Hv~l~V~D~----~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hl~f~v~dl~~ 141 (321)
+..|.|+|+ +||+++|||++... .+ ..+++..++ ..+..+.+..... .+....|++|.|+|+++
T Consensus 3 ~~~l~v~Dl~~s~~FY~~~lG~~~~~~----~~--~~~~~~~~~-~~~~~~~~~~~~~-----~~~~~~~i~~~v~d~~~ 70 (112)
T cd07238 3 VPNLPVADPEAAAAFYADVLGLDVVMD----HG--WIATFASPQ-NMTVQVSLATEGG-----TATVVPDLSIEVDDVDA 70 (112)
T ss_pred cceEecCCHHHHHHHHHHhcCceEEEc----CC--ceEEEeecC-CCCcEEEEecCCC-----CCCCCCEEEEEeCCHHH
Confidence 357889999 99999999998643 11 233444322 2233344432211 12345699999999999
Q ss_pred HHHHHHHcCCeeeeCCcccCCCCeEEEEEECCCCcEEEEEec
Q 020803 142 TVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLER 183 (321)
Q Consensus 142 ~~~~l~~~Gv~i~~~p~~~~~g~~~~~~~~DPdG~~iel~~~ 183 (321)
++++|+++|+++..+|...++ +.+.+++.||+||.|+++++
T Consensus 71 ~~~~l~~~G~~~~~~~~~~~~-g~~~~~~~DP~Gn~i~~~~~ 111 (112)
T cd07238 71 ALARAVAAGFAIVYGPTDEPW-GVRRFFVRDPFGKLVNILTH 111 (112)
T ss_pred HHHHHHhcCCeEecCCccCCC-ceEEEEEECCCCCEEEEEEc
Confidence 999999999999887766554 45678999999999999975
No 138
>cd07262 Glo_EDI_BRP_like_19 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.44 E-value=2.5e-12 Score=99.96 Aligned_cols=110 Identities=23% Similarity=0.228 Sum_probs=75.6
Q ss_pred ceEEEEEeCCh----hhhhhc---cCCEEEEEEeCCCCceEEEEeeeCCCCcceEEEEEeecCCCCcCCCCCceEEEEEe
Q 020803 64 PLIVVFPAGDG----RFYTEC---LGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAV 136 (321)
Q Consensus 64 i~Hv~l~V~D~----~FY~~v---LG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hl~f~v 136 (321)
|+||+|.|+|+ +||+++ ||++...+. .+. . +.+..+. ....+.+.......+ ....+..|++|.|
T Consensus 1 l~hv~l~v~d~~~s~~FY~~~f~~lg~~~~~~~---~~~-~-~~~~~~~--~~~~~~l~~~~~~~~-~~~~~~~hi~f~v 72 (123)
T cd07262 1 IDHVTLGVNDLERARAFYDAVLAPLGIKRVMED---GPG-A-VGYGKGG--GGPDFWVTKPFDGEP-ATAGNGTHVAFAA 72 (123)
T ss_pred CcEEEEecCcHHHHHHHHHHHHhhcCceEEeec---CCc-e-eEeccCC--CCceEEEeccccCCC-CCCCCceEEEEEC
Confidence 58999999999 999998 699987553 111 2 2233221 233455544322111 1223456999999
Q ss_pred CC---HHHHHHHHHHcCCeeeeCCcccCC--CCeEEEEEECCCCcEEEEE
Q 020803 137 DD---VAKTVELIKAKGGKVTREPGPVKG--GNTVIAFIEDPDGYKFELL 181 (321)
Q Consensus 137 ~d---l~~~~~~l~~~Gv~i~~~p~~~~~--g~~~~~~~~DPdG~~iel~ 181 (321)
+| +++++++++++|+.+..+|...+. ...+.+||.||+||.||++
T Consensus 73 ~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~DPdG~~ie~~ 122 (123)
T cd07262 73 PSREAVDAFHAAALAAGGTDEGAPGLRPHYGPGYYAAYVRDPDGNKIEAV 122 (123)
T ss_pred CCHHHHHHHHHHHHHcCCccCCCCCCCCCCCCCeEEEEEECCCCCEEEEe
Confidence 87 788999999999998877755442 2345689999999999997
No 139
>cd08345 Fosfomycin_RP Fosfomycin resistant protein; inhibits the biological function of fosfomycin. This family contains three types of fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. The three types of fosfomycin resistance proteins, employ different mechanisms to render fosfomycin [(1R,2S)-epoxypropylphosphonic acid] inactive. FosB catalyzes the addition of L-cysteine to the epoxide ring of fosfomycin. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. FosA catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. Catalytic activities of both FosX and FosA are Mn(II)-dependent, but FosB is activated by Mg(II). Fosfomycin resistant proteins are evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.44 E-value=1.5e-12 Score=99.57 Aligned_cols=105 Identities=22% Similarity=0.342 Sum_probs=72.9
Q ss_pred EEEEEeCCh----hhhhhccCCEEEEEEeCCCCceEEEEeeeCCCCcceEEEEEeecCCCCcCCCCCceEEEEEeC--CH
Q 020803 66 IVVFPAGDG----RFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVD--DV 139 (321)
Q Consensus 66 Hv~l~V~D~----~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hl~f~v~--dl 139 (321)
||.|.|+|+ +||+++||+++..+.. . .+++..+ ...+.+...... + ....+..|++|.|+ |+
T Consensus 1 Hv~l~v~d~~~s~~Fy~~~lg~~~~~~~~--~----~~~~~~~----~~~l~~~~~~~~-~-~~~~~~~hiaf~v~~~d~ 68 (113)
T cd08345 1 HITLIVKDLNKSIAFYRDILGAELIYSSS--K----EAYFELA----GLWICLMEEDSL-Q-GPERTYTHIAFQIQSEEF 68 (113)
T ss_pred CeeEEECCHHHHHHHHHHhcCCeeeeccC--c----eeEEEec----CeEEEeccCCCc-C-CCCCCccEEEEEcCHHHH
Confidence 899999999 9999999999876531 1 2334332 123333221111 1 12346789999995 79
Q ss_pred HHHHHHHHHcCCeeeeCCcccCCCCeEEEEEECCCCcEEEEEec
Q 020803 140 AKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLER 183 (321)
Q Consensus 140 ~~~~~~l~~~Gv~i~~~p~~~~~g~~~~~~~~DPdG~~iel~~~ 183 (321)
++++++++++|+++...+.... +.++.+|+.|||||.||++..
T Consensus 69 ~~~~~~l~~~G~~~~~~~~~~~-~~~~~~~~~DPdG~~iEi~~~ 111 (113)
T cd08345 69 DEYTERLKALGVEMKPERPRVQ-GEGRSIYFYDPDGHLLELHAG 111 (113)
T ss_pred HHHHHHHHHcCCccCCCccccC-CCceEEEEECCCCCEEEEEeC
Confidence 9999999999999865432222 245788999999999999854
No 140
>cd08354 Glo_EDI_BRP_like_13 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.44 E-value=3.1e-12 Score=99.08 Aligned_cols=109 Identities=27% Similarity=0.349 Sum_probs=76.2
Q ss_pred ceEEEEEeCCh----hhhhhccCCEEEEEEeCCCCceEEEEeeeCCCCcceEEEEEeecCCC------CcCCCCCceEEE
Q 020803 64 PLIVVFPAGDG----RFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVD------KYDIGTGFGHFG 133 (321)
Q Consensus 64 i~Hv~l~V~D~----~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~------~~~~~~g~~hl~ 133 (321)
|.|+.|.|+|+ +||+++|||++..+ +++. .+++..++. ..+.+....... ......+..|++
T Consensus 1 ~~~~~l~v~d~~~s~~Fy~~~lG~~~~~~---~~~~--~~~l~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (122)
T cd08354 1 ILETALYVDDLEAAEAFYEDVLGLELMLK---EDRR--LAFFWVGGR---GMLLLFDPGATSTPGGEIPPHGGSGPGHFA 72 (122)
T ss_pred CeEEEEEeCCHHHHHHHHHhccCCEEeec---CCCc--eEEEEcCCC---cEEEEEecCCcccccCCCCCCCCCCccEEE
Confidence 56899999999 99999999998764 1222 355555432 223332211100 112234788999
Q ss_pred EEeC--CHHHHHHHHHHcCCeeeeCCcccCCCCeEEEEEECCCCcEEEEEe
Q 020803 134 IAVD--DVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLE 182 (321)
Q Consensus 134 f~v~--dl~~~~~~l~~~Gv~i~~~p~~~~~g~~~~~~~~DPdG~~iel~~ 182 (321)
|.++ |++++++++.++|+++...+. .. .+++.+++.||+||.||+++
T Consensus 73 ~~v~~~dl~~~~~~l~~~g~~~~~~~~-~~-~~~~~~~~~DP~G~~ie~~~ 121 (122)
T cd08354 73 FAIPAEELAEWEAHLEAKGVAIESEVQ-WP-RGGRSLYFRDPDGNLLELAT 121 (122)
T ss_pred EEcCHHHHHHHHHHHHhcCCceecccc-CC-CCeeEEEEECCCCCEEEEec
Confidence 9994 799999999999999876543 22 24567999999999999985
No 141
>PF13669 Glyoxalase_4: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; PDB: 3RMU_B 3ISQ_A 1JC5_D 1JC4_D 3HDP_A 2QH0_A 3GM5_A 3OA4_A 3CT8_A.
Probab=99.43 E-value=7.4e-13 Score=101.01 Aligned_cols=95 Identities=23% Similarity=0.268 Sum_probs=74.2
Q ss_pred eEEEEEeCChhHHHHHHHHhcCCeeecccCCCCCceEEEEeccCCCCcceEEEeeeccCCCcc--CCCCCeeEEEEEeCC
Q 020803 191 CQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDY--DKGNAYAQIAIGTDD 268 (321)
Q Consensus 191 ~hi~l~v~D~e~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~--~~~~~~~hi~f~v~d 268 (321)
+||++.|+|+++|++||+++||++.......+..+....++..+. ....+||+++....+. ..+.+++|+||.|+|
T Consensus 1 dHv~i~V~Dl~~a~~~~~~~lG~~~~~~~~~~~~~v~~~~~~~~~--~~~~iELi~p~~~~~~~~~~~~gi~Hia~~v~D 78 (109)
T PF13669_consen 1 DHVGIVVPDLDAAAAFYCDVLGFEPWERYRDEPQGVRVAFLYLGD--GPVQIELIQPLDGDSPLDRGGGGIHHIAFEVDD 78 (109)
T ss_dssp EEEEEEES-HHHHHHHHHHCTTHEEEEEEEEGCTTEEEEEEEETT--ETEEEEEEEESSTTCHHHHTSSEEEEEEEEESH
T ss_pred CEEEEEcCCHHHHHHHHHHhhCCcEEEEEecCCCCEEEEEEEeCC--CcEEEEEEEeCCCCcccccCCCCEEEEEEEeCC
Confidence 699999999999999999999998876655555555666655432 1278898876554321 467799999999999
Q ss_pred HHHHHHHHHHCCCeeecCC
Q 020803 269 VYKTAEAIKLFGGKVTREP 287 (321)
Q Consensus 269 l~~~~~~l~~~G~~~~~~p 287 (321)
++++.++|+++|+++...+
T Consensus 79 ~d~~~~~l~~~G~~~~~~~ 97 (109)
T PF13669_consen 79 LDAAIARLEAQGFRVLDEG 97 (109)
T ss_dssp HHHHHHHHHHTTECEEECE
T ss_pred HHHHHHHHHHCCCEEcccC
Confidence 9999999999999987654
No 142
>cd07254 Glo_EDI_BRP_like_20 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and types I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.42 E-value=6e-12 Score=97.44 Aligned_cols=108 Identities=25% Similarity=0.389 Sum_probs=74.9
Q ss_pred eEEEEEeCCh----hhhhhccCCEEEEEEeCCCCceEEEEeeeCCCCcceEEEEEeecCCCCcCCCCCceEEEEEeCC--
Q 020803 65 LIVVFPAGDG----RFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVDD-- 138 (321)
Q Consensus 65 ~Hv~l~V~D~----~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hl~f~v~d-- 138 (321)
.|+.|.|+|+ +||+++||++...+. ++ . ..|.. +. ....+.+..... ...+++.|++|.|+|
T Consensus 3 ~hv~l~v~d~~~a~~FY~~~lG~~~~~~~---~~-~-~~~~~-~~--~~~~~~~~~~~~----~~~~~~~h~~f~v~~~~ 70 (120)
T cd07254 3 FHVALNVDDLEASIAFYSKLFGVEPTKVR---DD-Y-AKFLL-ED--PRLNFVLNERPG----APGGGLNHLGVQVDSAE 70 (120)
T ss_pred EEEEEEeCCHHHHHHHHHHHhCCeEeccc---CC-e-eEEEe-cC--CceEEEEecCCC----CCCCCeeEEEEEeCCHH
Confidence 5999999999 999999999986552 11 1 23322 11 122333322111 111578899999987
Q ss_pred -HHHHHHHHHHcCCeeeeCCcccC-CCCeEEEEEECCCCcEEEEEecC
Q 020803 139 -VAKTVELIKAKGGKVTREPGPVK-GGNTVIAFIEDPDGYKFELLERG 184 (321)
Q Consensus 139 -l~~~~~~l~~~Gv~i~~~p~~~~-~g~~~~~~~~DPdG~~iel~~~~ 184 (321)
++++++++.++|+++...+.... .+..+.+|++||+||.|||+...
T Consensus 71 dl~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~~ 118 (120)
T cd07254 71 EVAEAKARAEAAGLPTFKEEDTTCCYAVQDKVWVTDPDGNAWEVFVTL 118 (120)
T ss_pred HHHHHHHHHHHcCCeEEccCCcccccCCcceEEEECCCCCEEEEEEee
Confidence 78899999999999877654332 22346799999999999999753
No 143
>cd06587 Glo_EDI_BRP_like This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). Type I extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into aromatic substrates, which results in the cleavage of aromatic rings. They are key enzymes in the degradation of aromatic compounds. Type I extradiol dioxygenases include class I and class II enzymes. Class I and II enzymes show sequence similarity; the two-domain clas
Probab=99.42 E-value=4.3e-12 Score=95.60 Aligned_cols=108 Identities=32% Similarity=0.371 Sum_probs=80.1
Q ss_pred EEEEEeCCh----hhhhhccCCEEEEEEeCCCCceEEEEeeeCCCCcceEEEEEeecCCCCcCCCCCceEEEEEeCCHHH
Q 020803 66 IVVFPAGDG----RFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVDDVAK 141 (321)
Q Consensus 66 Hv~l~V~D~----~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hl~f~v~dl~~ 141 (321)
|++|.|+|+ +||+++||+++...... .....+++..+ ...+.+....+......+.+..|++|.|+|+++
T Consensus 1 Hi~i~~~d~~~~~~fy~~~lg~~~~~~~~~--~~~~~~~~~~~----~~~i~l~~~~~~~~~~~~~~~~~~~~~v~~~~~ 74 (112)
T cd06587 1 HVGLTVSDLEAAVAFYEEVLGFEVLFRNGN--GGAEFAVLGLG----GTRLELFEGDEPAPAPSGGGGVHLAFEVDDVDA 74 (112)
T ss_pred CcceeeCCHHHHHHHHHhccCCEEEEeecc--CCEEEEEEecC----CceEEEecCCCCCCcccCCCeeEEEEECCCHHH
Confidence 899999999 99999999998877532 22345556543 345666553332211245678899999999999
Q ss_pred HHHHHHHcCCeeeeCCcccCCCCeEEEEEECCCCcEEEE
Q 020803 142 TVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFEL 180 (321)
Q Consensus 142 ~~~~l~~~Gv~i~~~p~~~~~g~~~~~~~~DPdG~~iel 180 (321)
++++|+++|+.+...+... ..+...+++.||+|+.|+|
T Consensus 75 ~~~~l~~~g~~~~~~~~~~-~~~~~~~~~~Dp~G~~~~~ 112 (112)
T cd06587 75 AYERLKAAGVEVLGEPREE-PWGGRVAYFRDPDGNLIEL 112 (112)
T ss_pred HHHHHHHcCCcccCCCcCC-CCCcEEEEEECCCCcEEeC
Confidence 9999999999988766422 2356789999999999985
No 144
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.42 E-value=4.6e-12 Score=96.99 Aligned_cols=103 Identities=18% Similarity=0.217 Sum_probs=69.4
Q ss_pred eceEEEEEeCCh----hhhhhccCCEEEEEEeCCCCceEEEEeeeCCCCcceEEEEEeecCCCCcCCCCCceEEE--EEe
Q 020803 63 FPLIVVFPAGDG----RFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFG--IAV 136 (321)
Q Consensus 63 ~i~Hv~l~V~D~----~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hl~--f~v 136 (321)
+|+||+|.|+|+ +||+ +|||++..+. + . ..+...+ ..+..+.+... ...++.|++ +.+
T Consensus 2 ~i~hv~l~v~d~~~s~~FY~-~lG~~~~~~~----~-~-~~~~~~~--~~~~~~~~~~~-------~~~~~~~~~~~~~~ 65 (112)
T cd08344 2 SIDHFALEVPDLEVARRFYE-AFGLDVREEG----D-G-LELRTAG--NDHRWARLLEG-------ARKRLAYLSFGIFE 65 (112)
T ss_pred ceeEEEEecCCHHHHHHHHH-HhCCcEEeec----C-c-eEEEecC--CCceEEEeecC-------CCCceeeEEEEeEh
Confidence 689999999999 9997 6999986542 1 1 2222222 12223333221 122344544 455
Q ss_pred CCHHHHHHHHHHcCCeeeeCCcccCCCCeEEEEEECCCCcEEEEEecC
Q 020803 137 DDVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERG 184 (321)
Q Consensus 137 ~dl~~~~~~l~~~Gv~i~~~p~~~~~g~~~~~~~~DPdG~~iel~~~~ 184 (321)
+|+++++++|+++|+++..++. +. ..+.+||.||+||.|||....
T Consensus 66 ~d~~~~~~~l~~~Gi~~~~~~~--~~-~~~~~~~~DP~Gn~iel~~~~ 110 (112)
T cd08344 66 DDFAAFARHLEAAGVALAAAPP--GA-DPDGVWFRDPDGNLLQVKVAE 110 (112)
T ss_pred hhHHHHHHHHHHcCCceecCCC--cC-CCCEEEEECCCCCEEEEecCC
Confidence 8999999999999999876652 22 334689999999999998543
No 145
>COG3185 4-hydroxyphenylpyruvate dioxygenase and related hemolysins [Amino acid transport and metabolism / General function prediction only]
Probab=99.41 E-value=1.3e-11 Score=108.51 Aligned_cols=219 Identities=19% Similarity=0.197 Sum_probs=139.8
Q ss_pred eeeceEEEEEeCCh----hhhhhccCCEEEEEEeCCCCceEEEEeeeCCCCcceEEEEEeecCC--CC--cCCCCCceEE
Q 020803 61 SFFPLIVVFPAGDG----RFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGV--DK--YDIGTGFGHF 132 (321)
Q Consensus 61 ~~~i~Hv~l~V~D~----~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~--~~--~~~~~g~~hl 132 (321)
...+.+|.+.|+|. .=|-..|||+........+ ..+| +-| ...+-+...... .. ..+|+++..+
T Consensus 20 ~~GfeFvEf~~~d~~~~l~~l~~~lGF~~~~~Hrsk~---v~l~-rQG----dinlvvn~~~~s~a~~f~~~Hgps~~a~ 91 (363)
T COG3185 20 TDGFEFVEFAVPDPQEALGALLGQLGFTAVAKHRSKA---VTLY-RQG----DINLVVNAEPDSFAAEFLDKHGPSACAM 91 (363)
T ss_pred CCceeEEEEecCCHHHHHHHHHHHhCccccccccccc---eeEE-EeC----CEEEEEcCCCcchhhHHHHhcCCchhee
Confidence 45899999999999 3344569999876543221 1222 212 222222221111 11 1578889999
Q ss_pred EEEeCCHHHHHHHHHHcCCeeeeCCc-----ccC---CCCeEEEEEECCCC-cEE---EEEec----CCC---CCCceEE
Q 020803 133 GIAVDDVAKTVELIKAKGGKVTREPG-----PVK---GGNTVIAFIEDPDG-YKF---ELLER----GPT---PEPLCQV 193 (321)
Q Consensus 133 ~f~v~dl~~~~~~l~~~Gv~i~~~p~-----~~~---~g~~~~~~~~DPdG-~~i---el~~~----~~~---~~~l~hi 193 (321)
+|.|+|...++++..+.|.+....+. ..+ +-++..+||.|..| ..+ ++... ... ..+|+|+
T Consensus 92 a~~V~DA~~A~a~A~a~gA~~~~~~~g~~e~~ipai~giggsllyfvd~~~~~siyd~~f~~~~~~~~~~~~g~~~IDHl 171 (363)
T COG3185 92 AFRVDDAEQALARALALGARTIDTEIGAGEVDIPAIRGIGGSLLYFVDRYGGRSIYDVEFEPNGAQGASGGVGLTAIDHL 171 (363)
T ss_pred EEeeCCHHHHHHHHHHcCCccccCCCCCccccccceeccCCcEEEEeccCCCCcccccccccccccccccccCceeechh
Confidence 99999999999999999996544332 111 12456788888883 222 11111 111 2479999
Q ss_pred EEEeC--ChhHHHHHHHHhcCCeeecccCCCCCceEEEEeccCCCCcceEEEeeeccCCCc-------cCCCCCeeEEEE
Q 020803 194 MLRVG--DLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTD-------YDKGNAYAQIAI 264 (321)
Q Consensus 194 ~l~v~--D~e~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~-------~~~~~~~~hi~f 264 (321)
+.+|. .++....||+++|||+.....+.++..-.+..-...++++...+.|....+..+ ...|.|+.||+|
T Consensus 172 ~~nv~~~~md~w~~FY~~if~~~~~~~fdi~~p~tgl~Sram~Sp~G~vrlplN~s~~~~sqi~efl~~y~G~GIQHIA~ 251 (363)
T COG3185 172 THNVKAGQMDTWVLFYESLFGFREIQYFDIPGPITGLRSRAMVSPCGKVRLPLNESADDKSQIGEFLREYRGEGIQHIAF 251 (363)
T ss_pred hhhcchhhHHHHHHHHHHHhCccceeeEeccCCcccEEEeeEecCCCcEEeecccCCCchhHHHHHHHHhCCCcceEEEe
Confidence 99886 899999999999999988766544321111111111233345554443222211 246779999999
Q ss_pred EeCCHHHHHHHHHHCCCeeecCC
Q 020803 265 GTDDVYKTAEAIKLFGGKVTREP 287 (321)
Q Consensus 265 ~v~dl~~~~~~l~~~G~~~~~~p 287 (321)
.++|+-++.++++++|+++...|
T Consensus 252 ~T~dI~~tv~~lr~rG~~fl~ip 274 (363)
T COG3185 252 GTDDIYATVAALRERGVKFLPIP 274 (363)
T ss_pred cccHHHHHHHHHHHcCCccCCCc
Confidence 99999999999999999988766
No 146
>COG3324 Predicted enzyme related to lactoylglutathione lyase [General function prediction only]
Probab=99.41 E-value=5.1e-12 Score=96.99 Aligned_cols=116 Identities=27% Similarity=0.267 Sum_probs=83.9
Q ss_pred eeeeceEEEEEeCCh----hhhhhccCCEEEEEEeCCCCceEEEEeeeCC-CCcceEEEEEeecCCCCcCCCCCceEEEE
Q 020803 60 FSFFPLIVVFPAGDG----RFYTECLGMKLLRKRDIPEEKYTNAFLGYGP-EDSHFVIELTYNYGVDKYDIGTGFGHFGI 134 (321)
Q Consensus 60 m~~~i~Hv~l~V~D~----~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~l~l~~~~~~~~~~~~~g~~hl~f 134 (321)
|.-.+.|..|.|+|+ +||.++|||+........+ ...+.+..+. ...+. +... .....+.+...+.|
T Consensus 6 ~~~~i~w~Ei~~~D~~ra~~FY~~vFgW~~~~~~~~~~--~~y~~f~~~~~~~gG~---l~~~---~~~~p~~~~~~iy~ 77 (127)
T COG3324 6 EKGTIVWFELPVSDLERAKAFYEKVFGWTFEDYFDMGE--MRYAVFPADGAGAGGG---LMAR---PGSPPGGGGWVIYF 77 (127)
T ss_pred cCCccEEEeeecCCHHHHHHHHHHhhCceecccccCCC--ceEEEEECCCccccce---eccC---CcCCCCCCCEEEEE
Confidence 456799999999999 9999999999987644322 2333333222 11111 1111 11122234456889
Q ss_pred EeCCHHHHHHHHHHcCCeeeeCCcccCCCCeEEEEEECCCCcEEEEEecC
Q 020803 135 AVDDVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERG 184 (321)
Q Consensus 135 ~v~dl~~~~~~l~~~Gv~i~~~p~~~~~g~~~~~~~~DPdG~~iel~~~~ 184 (321)
.|+|+++..+|++++|.+|..++...++ .++++.+.||+||.|.|++..
T Consensus 78 ~v~did~~l~rv~~~GG~V~~p~~~~p~-~G~~a~~~Dp~Gn~~~l~s~~ 126 (127)
T COG3324 78 AVDDIDATLERVVAAGGKVLRPKTEFPG-GGRIAHFVDPEGNRFGLWSPA 126 (127)
T ss_pred ecCChHHHHHHHHhcCCeEEecccccCC-ceEEEEEECCCCCEEEEeecC
Confidence 9999999999999999999999988875 678999999999999999753
No 147
>cd08349 BLMA_like Bleomycin binding protein (BLMA) and similar proteins; BLMA confers bleomycin (Bm) resistance by directly binding to Bm. BLMA also called Bleomycin resistance protein, confers Bm resistance by directly binding to Bm. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMA is produced by actinomycetes to protect themselves against their own lethal compound. BLMA has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMAs are dimers and each dimer binds to two Bm molecules at the Bm-binding pockets formed at the dimer interface; two Bm molecules are bound per dimer. BLMA belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. As for the large
Probab=99.40 E-value=8.2e-12 Score=95.11 Aligned_cols=105 Identities=28% Similarity=0.313 Sum_probs=74.4
Q ss_pred EEEeCCh----hhhhhccCCEEEEEEeCCCCceEEEEeeeCCCCcceEEEEEeecCCCCcCCCCCceEEEEEeCCHHHHH
Q 020803 68 VFPAGDG----RFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVDDVAKTV 143 (321)
Q Consensus 68 ~l~V~D~----~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hl~f~v~dl~~~~ 143 (321)
.|.|+|+ +||+++|||++..... +. ..+++..+ +..+.+........ ....+..|++|.++|++++.
T Consensus 3 ~i~v~d~~~s~~FY~~~lg~~~~~~~~--~~--~~~~~~~~----~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 73 (112)
T cd08349 3 VLPVSDIERSLAFYRDVLGFEVDWEHP--EP--GYAFLSRG----GAQLMLSEHDGDEP-VPLGRGGSVYIEVEDVDALY 73 (112)
T ss_pred EEEECCHHHHHHHHHhccCeEEEEEcC--CC--cEEEEEeC----CEEEEEeccCCCCC-CCCCCcEEEEEEeCCHHHHH
Confidence 6899999 9999999999877643 12 23445432 23445543322211 12345668999999999999
Q ss_pred HHHHHcCCe-eeeCCcccCCCCeEEEEEECCCCcEEEEEe
Q 020803 144 ELIKAKGGK-VTREPGPVKGGNTVIAFIEDPDGYKFELLE 182 (321)
Q Consensus 144 ~~l~~~Gv~-i~~~p~~~~~g~~~~~~~~DPdG~~iel~~ 182 (321)
++++++|+. +..++...+. +.+.+++.||+||.|||+|
T Consensus 74 ~~l~~~G~~~~~~~~~~~~~-g~~~~~~~DP~G~~ie~~~ 112 (112)
T cd08349 74 AELKAKGADLIVYPPEDQPW-GMREFAVRDPDGNLLRFGE 112 (112)
T ss_pred HHHHHcCCcceecCccCCCc-ccEEEEEECCCCCEEEecC
Confidence 999999999 5555554443 4577899999999999985
No 148
>cd08357 Glo_EDI_BRP_like_18 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.40 E-value=4.2e-12 Score=98.79 Aligned_cols=109 Identities=23% Similarity=0.333 Sum_probs=70.6
Q ss_pred EEEEEeCCh----hhhhhccCCEEEEEEeCCCCceEEEEeeeCCCCcceEEEEEeecC----CCC-cCCCCCceEEE--E
Q 020803 66 IVVFPAGDG----RFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYG----VDK-YDIGTGFGHFG--I 134 (321)
Q Consensus 66 Hv~l~V~D~----~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~----~~~-~~~~~g~~hl~--f 134 (321)
||+|.|+|+ +||+++|||++..... . .+.+..+ +....+.+..... ... .....+..|++ +
T Consensus 2 Hi~l~v~Dl~~s~~FY~~~lG~~~~~~~~----~--~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 73 (125)
T cd08357 2 HLAIPVRDLEAARAFYGDVLGCKEGRSSE----T--WVDFDFF--GHQLVAHLSPNFNADASDNAVDGHPVPVPHFGLIL 73 (125)
T ss_pred eEEEEeCCHHHHHHHHHHhcCCEEeeccC----C--ccccccc--CcEEEEEeccCCCcccccCCCCCCccCCceEEEEE
Confidence 999999999 9999999999865321 1 1223222 1122232221110 000 01122456765 4
Q ss_pred EeCCHHHHHHHHHHcCCeeeeCCcccC---CCCeEEEEEECCCCcEEEEEe
Q 020803 135 AVDDVAKTVELIKAKGGKVTREPGPVK---GGNTVIAFIEDPDGYKFELLE 182 (321)
Q Consensus 135 ~v~dl~~~~~~l~~~Gv~i~~~p~~~~---~g~~~~~~~~DPdG~~iel~~ 182 (321)
.++|+++++++|+++|+++..+|.... .++.+.+||.|||||.|||..
T Consensus 74 ~~~dv~~~~~~l~~~g~~~~~~p~~~~~~~~~~~~~~~~~DPdG~~iE~~~ 124 (125)
T cd08357 74 SEEEFDALAERLEAAGVEFLIEPYTRFEGQPGEQETFFLKDPSGNALEFKA 124 (125)
T ss_pred eHHHHHHHHHHHHHCCCcEecCcceeccCCcCceeEEEEECCCCCEEEEee
Confidence 568999999999999999987765422 234578999999999999974
No 149
>PF13669 Glyoxalase_4: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; PDB: 3RMU_B 3ISQ_A 1JC5_D 1JC4_D 3HDP_A 2QH0_A 3GM5_A 3OA4_A 3CT8_A.
Probab=99.39 E-value=3.8e-12 Score=97.10 Aligned_cols=102 Identities=25% Similarity=0.241 Sum_probs=77.6
Q ss_pred eEEEEEeCCh----hhhhhccCCEEEEEEeCCCCceEEEEeeeCCCCcceEEEEEeecCCCCc--CCCCCceEEEEEeCC
Q 020803 65 LIVVFPAGDG----RFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKY--DIGTGFGHFGIAVDD 138 (321)
Q Consensus 65 ~Hv~l~V~D~----~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~--~~~~g~~hl~f~v~d 138 (321)
+||+|.|+|+ +||+++||++.......+....+.+++..+++ ...++|.++.+..+. ..+.|++||||.|+|
T Consensus 1 dHv~i~V~Dl~~a~~~~~~~lG~~~~~~~~~~~~~v~~~~~~~~~~--~~~iELi~p~~~~~~~~~~~~gi~Hia~~v~D 78 (109)
T PF13669_consen 1 DHVGIVVPDLDAAAAFYCDVLGFEPWERYRDEPQGVRVAFLYLGDG--PVQIELIQPLDGDSPLDRGGGGIHHIAFEVDD 78 (109)
T ss_dssp EEEEEEES-HHHHHHHHHHCTTHEEEEEEEEGCTTEEEEEEEETTE--TEEEEEEEESSTTCHHHHTSSEEEEEEEEESH
T ss_pred CEEEEEcCCHHHHHHHHHHhhCCcEEEEEecCCCCEEEEEEEeCCC--cEEEEEEEeCCCCcccccCCCCEEEEEEEeCC
Confidence 6999999999 99999999998877666666677788776532 267888876554432 477899999999999
Q ss_pred HHHHHHHHHHcCCeeeeCCcccCCCCeEEE
Q 020803 139 VAKTVELIKAKGGKVTREPGPVKGGNTVIA 168 (321)
Q Consensus 139 l~~~~~~l~~~Gv~i~~~p~~~~~g~~~~~ 168 (321)
++++.++|+++|+++...+.....++.+++
T Consensus 79 ~d~~~~~l~~~G~~~~~~~~~~g~~g~r~~ 108 (109)
T PF13669_consen 79 LDAAIARLEAQGFRVLDEGPRPGRPGRRVA 108 (109)
T ss_dssp HHHHHHHHHHTTECEEECEEEETGTCSEEE
T ss_pred HHHHHHHHHHCCCEEcccCcccCCCCcEEE
Confidence 999999999999998876533322234444
No 150
>KOG2943 consensus Predicted glyoxalase [Carbohydrate transport and metabolism]
Probab=99.39 E-value=2.4e-12 Score=106.64 Aligned_cols=120 Identities=39% Similarity=0.732 Sum_probs=103.3
Q ss_pred CCCCceEEEEEeCChhHHHHHHHHhcCCeeecccCCCC-----------CceEEEEeccCCCCcceEEEeeeccCCCccC
Q 020803 186 TPEPLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPE-----------YKYTIAMMGYGPEDKNVVLELTYNYGVTDYD 254 (321)
Q Consensus 186 ~~~~l~hi~l~v~D~e~a~~FY~~vLG~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~ 254 (321)
...|.-|+.+.|.|.++++.||+++|||++.+..+.+. +.|.-.++++++++.++++||.++.+...+.
T Consensus 14 ~~~r~LH~VfkVgdr~kti~Fyt~vlgMkvLRheef~egc~aacngpyd~kwSktmvGyGpEdshFViELTYNYgV~~Ye 93 (299)
T KOG2943|consen 14 DTRRALHYVFKVGDRAKTIDFYTEVLGMKVLRHEEFEEGCEAACNGPYDGKWSKTMVGYGPEDSHFVIELTYNYGVSKYE 93 (299)
T ss_pred cchheeeEeEeecchHHHHHHHHHhhcceeeehhhhhhhhhhhcCCCcccchhhhheecCCCcccEEEEEEeccCcccee
Confidence 45789999999999999999999999999998776654 6778888999999999999999999999999
Q ss_pred CCCCeeEEEEEeCCHHHHHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEEEEEecc
Q 020803 255 KGNAYAQIAIGTDDVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDNV 314 (321)
Q Consensus 255 ~~~~~~hi~f~v~dl~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~ 314 (321)
-|+++.|+.+.++|+-..++.+...|.+ ..+ .-.+++.||||+.++|.++.
T Consensus 94 lGndfg~i~I~s~dv~~~ve~v~~p~~~--------~~g-~~~~~v~dPdGykF~l~~~~ 144 (299)
T KOG2943|consen 94 LGNDFGGITIASDDVFSKVEKVNAPGGK--------GSG-CGIAFVKDPDGYKFYLIDRG 144 (299)
T ss_pred ccCCcccEEEeHHHHHHHHHHhcCcCCc--------ccc-eEEEEEECCCCcEEEEeccC
Confidence 9999999999999998888888766542 112 35689999999999999743
No 151
>cd07235 MRD Mitomycin C resistance protein (MRD). Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.
Probab=99.39 E-value=5.9e-12 Score=97.73 Aligned_cols=109 Identities=17% Similarity=0.100 Sum_probs=71.6
Q ss_pred ceEEEEEeCCh----hhhhhccCCEEEEEEeCCCCceEEEEeeeCCCCcceEEEEEeec-----CCCCcCCCCCceEEEE
Q 020803 64 PLIVVFPAGDG----RFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNY-----GVDKYDIGTGFGHFGI 134 (321)
Q Consensus 64 i~Hv~l~V~D~----~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~-----~~~~~~~~~g~~hl~f 134 (321)
++||+|.|+|+ +||+. |||++...... ...+.+..++ +..+.+.... .......+.+..|++|
T Consensus 1 ~~~i~l~V~D~~~a~~FY~~-LGf~~~~~~~~----~~~~~~~~~~---~~~l~l~~~~~~~~~~~~~~~~~~~~~~l~~ 72 (122)
T cd07235 1 LDAVGIVVADMAKSLDFYRR-LGFDFPEEADD----EPHVEAVLPG---GVRLAWDTVESIRSFTPGWTPTGGHRIALAF 72 (122)
T ss_pred CceEEEEeccHHHHHHHHHH-hCceecCCcCC----CCcEEEEeCC---CEEEEEEcccceeeecCCCCCCCCCcEEEEE
Confidence 58999999999 99975 99998543211 1122233221 1222221110 0011112234567888
Q ss_pred EeC---CHHHHHHHHHHcCCeeeeCCcccCCCCeEEEEEECCCCcEEEEE
Q 020803 135 AVD---DVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELL 181 (321)
Q Consensus 135 ~v~---dl~~~~~~l~~~Gv~i~~~p~~~~~g~~~~~~~~DPdG~~iel~ 181 (321)
.+. |+++++++|+++|+++..+|...+. +.+.++++|||||.|||+
T Consensus 73 ~~~~~~dvd~~~~~l~~~G~~~~~~~~~~~~-g~~~~~~~DPdG~~iel~ 121 (122)
T cd07235 73 LCETPAEVDALYAELVGAGYPGHKEPWDAPW-GQRYAIVKDPDGNLVDLF 121 (122)
T ss_pred EcCCHHHHHHHHHHHHHCCCCcCCCCccCCC-CCEEEEEECCCCCEEEEe
Confidence 875 7999999999999998887766655 357789999999999997
No 152
>KOG2944 consensus Glyoxalase [Carbohydrate transport and metabolism]
Probab=99.38 E-value=4.7e-12 Score=98.54 Aligned_cols=116 Identities=30% Similarity=0.413 Sum_probs=80.3
Q ss_pred eeeceEEEEEeCCh----hhhhhccCCEEEEEEeCCCCceEEEEeeeCCCCcceEEEEEeecCCCC-----c----CCCC
Q 020803 61 SFFPLIVVFPAGDG----RFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDK-----Y----DIGT 127 (321)
Q Consensus 61 ~~~i~Hv~l~V~D~----~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~-----~----~~~~ 127 (321)
..+..|+.|.+++. .||...||.+.....+.+..... +++-.. ...++|..+.+..+ + ..+.
T Consensus 40 ytr~~gm~l~~~~~fke~~Fsl~fL~~~~~~~vP~~~~~~~-v~~~~~----~~~~ELthn~Gtes~~~~~~~ngN~~pr 114 (170)
T KOG2944|consen 40 YTRVNGMALLVPDDFKEAKFSLYFLGAEVSEDVPKPEHGVS-VFVFSR----NAKLELTHNWGTESPPDQAYLNGNKEPR 114 (170)
T ss_pred hhhhccceeechhhhhHhhhHHHhhcccccccCccCCCCCc-eEEecc----cCceeeecCCCCCCCcchhhcCCCCCCC
Confidence 45677777777777 77777777776655444333322 333322 23567777655422 2 1224
Q ss_pred CceEEEEEeCCHHHHHHHHHHcCCeeeeCCcccCCCCeEEEEEECCCCcEEEEEec
Q 020803 128 GFGHFGIAVDDVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLER 183 (321)
Q Consensus 128 g~~hl~f~v~dl~~~~~~l~~~Gv~i~~~p~~~~~g~~~~~~~~DPdG~~iel~~~ 183 (321)
|++||||+|+|+++++++|++.||++...+..-. ...++|+.||||+.||+...
T Consensus 115 GfgHIci~V~di~sac~~lkekGV~f~Kk~~dGk--~K~iaF~~dpDgywiei~~~ 168 (170)
T KOG2944|consen 115 GFGHICIEVDDINSACERLKEKGVRFKKKLKDGK--MKPIAFLHDPDGYWIEIELE 168 (170)
T ss_pred ccceEEEEeCCHHHHHHHHHHhCceeeecCCCcc--ccceeEEECCCCCeEEEeec
Confidence 9999999999999999999999999776554221 24689999999999999864
No 153
>cd09012 Glo_EDI_BRP_like_24 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.38 E-value=7.6e-12 Score=97.55 Aligned_cols=109 Identities=23% Similarity=0.201 Sum_probs=72.9
Q ss_pred ceEEEEEeCCh----hhhhhccCCEEEEEEeCCCCceEEEEeeeCCCCcceEEEEEeecC-----CCCc--CCCCCceEE
Q 020803 64 PLIVVFPAGDG----RFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYG-----VDKY--DIGTGFGHF 132 (321)
Q Consensus 64 i~Hv~l~V~D~----~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~-----~~~~--~~~~g~~hl 132 (321)
+.+|+|.|+|+ +||++ |||+.......+. . +.+..++ ...+.+..... ..+. ..+.+..|+
T Consensus 1 ~~~v~l~V~Dl~~s~~FY~~-lGf~~~~~~~~~~--~--~~~~~~~---~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~l 72 (124)
T cd09012 1 MIFINLPVKDLEKSTAFYTA-LGFEFNPQFSDEK--A--ACMVISD---NIFVMLLTEDFFQTFTPKPIADTKKSTEVLI 72 (124)
T ss_pred CEEEEeecCCHHHHHHHHHH-CCCEEccccCCCC--e--EEEEECC---ceEEEEEcHHHHhhccCCCcccCCCCCeEEE
Confidence 36899999999 99976 9999865332221 1 2222221 22343432110 0000 123345689
Q ss_pred EEEeC---CHHHHHHHHHHcCCeeeeCCcccCCCCeEEEEEECCCCcEEEEEe
Q 020803 133 GIAVD---DVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLE 182 (321)
Q Consensus 133 ~f~v~---dl~~~~~~l~~~Gv~i~~~p~~~~~g~~~~~~~~DPdG~~iel~~ 182 (321)
+|.|+ |+++++++++++|+++..+|...+ .++.+||.|||||.||++.
T Consensus 73 ~f~v~~~~~vd~~~~~l~~~G~~i~~~p~~~~--~~~~~~~~DPdG~~ie~~~ 123 (124)
T cd09012 73 SLSADSREEVDELVEKALAAGGKEFREPQDHG--FMYGRSFADLDGHLWEVLW 123 (124)
T ss_pred EEeCCCHHHHHHHHHHHHHCCCcccCCcccCC--ceEEEEEECCCCCEEEEEE
Confidence 99998 588999999999999988776554 3456899999999999985
No 154
>cd08350 BLMT_like BLMT, a bleomycin resistance protein encoded on the transposon Tn5, and similar proteins. BLMT is a bleomycin (Bm) resistance protein, encoded by the ble gene on the transposon Tn5. This protein confers a survival advantage to Escherichia coli host cells. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMT has strong binding affinity to Bm and it protects against this lethal compound through drug sequestering. BLMT has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMT is a dimer with two Bm-binding pockets formed at the dimer interface.
Probab=99.36 E-value=1.7e-11 Score=94.99 Aligned_cols=104 Identities=21% Similarity=0.201 Sum_probs=71.4
Q ss_pred EEEEEeCCh----hhhhhccCCEEEEEEeCCCCceEEEEeeeCCCCcceEEEEEeecCCCCcCCCCCceEEEEEeCCHHH
Q 020803 66 IVVFPAGDG----RFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVDDVAK 141 (321)
Q Consensus 66 Hv~l~V~D~----~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hl~f~v~dl~~ 141 (321)
...|.|+|+ +||++ |||++..+... . .+++..+ +..+.+...... .......|++|.|+|+++
T Consensus 5 ~~~l~v~Dl~~s~~FY~~-lG~~~~~~~~~---~--~~~~~~~----~~~l~l~~~~~~---~~~~~~~~~~~~v~dvd~ 71 (120)
T cd08350 5 IPNLPSRDLDATEAFYAR-LGFSVGYRQAA---G--YMILRRG----DLELHFFAHPDL---DPATSPFGCCLRLPDVAA 71 (120)
T ss_pred cceeEcCCHHHHHHHHHH-cCCEEEecCCC---C--EEEEEcC----CEEEEEEecCcC---CCCCCcceEEEEeCCHHH
Confidence 467999999 99999 99998765321 2 3444433 234555432211 111223478999999999
Q ss_pred HHHHHHHcCCeee-------eCCcccCCCCeEEEEEECCCCcEEEEEec
Q 020803 142 TVELIKAKGGKVT-------REPGPVKGGNTVIAFIEDPDGYKFELLER 183 (321)
Q Consensus 142 ~~~~l~~~Gv~i~-------~~p~~~~~g~~~~~~~~DPdG~~iel~~~ 183 (321)
++++|+++|+++. .++...+. +.+.++|.|||||.|+|.|.
T Consensus 72 ~~~~l~~~G~~~~~~~~~~~~~~~~~~~-g~~~~~~~DPdG~~ie~~~~ 119 (120)
T cd08350 72 LHAEFRAAGLPETGSGIPRITPPEDQPW-GMREFALVDPDGNLLRFGQP 119 (120)
T ss_pred HHHHHHHhCccccccCCCcccCCcCCCC-ceeEEEEECCCCCEEEeecC
Confidence 9999999999853 23333333 56789999999999999874
No 155
>cd07261 Glo_EDI_BRP_like_11 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.35 E-value=1.5e-11 Score=94.31 Aligned_cols=104 Identities=27% Similarity=0.369 Sum_probs=73.3
Q ss_pred EEEEeCCh----hhhhhccCCEEEEEEeCCCCceEEEEeeeCCCCcceEEEEEeecCCCC-cCCCCCceEEEEEeCC---
Q 020803 67 VVFPAGDG----RFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDK-YDIGTGFGHFGIAVDD--- 138 (321)
Q Consensus 67 v~l~V~D~----~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~-~~~~~g~~hl~f~v~d--- 138 (321)
+.|.|+|+ +||+++||+++.... ..+ +.+..++ +..+.+........ .....+..|++|.|++
T Consensus 2 ~~l~v~d~~~a~~FY~~~lg~~~~~~~----~~~--~~~~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 72 (114)
T cd07261 2 VLLYVEDPAASAEFYSELLGREPVELS----PTF--ALFVLGS---GVKLGLWSRHTVEPASDATGGGSELAFMVDDGAA 72 (114)
T ss_pred EEEEECCHHHHHHHHHHHcCCCccCCC----Cce--EEEEeCC---CcEEEEeeccccCCCCCCCCCceEEEEEcCCHHH
Confidence 67999999 999999999986531 223 2233322 23344443322111 1233467899999986
Q ss_pred HHHHHHHHHHcCCeeeeCCcccCCCCeEEEEEECCCCcEEEEE
Q 020803 139 VAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELL 181 (321)
Q Consensus 139 l~~~~~~l~~~Gv~i~~~p~~~~~g~~~~~~~~DPdG~~iel~ 181 (321)
+++++++++++|+++..+|...+.| +.++|.|||||.||++
T Consensus 73 ~~~~~~~~~~~g~~v~~~~~~~~~g--~~~~~~DPdGn~ie~~ 113 (114)
T cd07261 73 VDALYAEWQAKGVKIIQEPTEMDFG--YTFVALDPDGHRLRVF 113 (114)
T ss_pred HHHHHHHHHHCCCeEecCccccCCc--cEEEEECCCCCEEEee
Confidence 8889999999999998887766543 5689999999999997
No 156
>COG2514 Predicted ring-cleavage extradiol dioxygenase [General function prediction only]
Probab=99.31 E-value=3.6e-11 Score=102.47 Aligned_cols=117 Identities=20% Similarity=0.229 Sum_probs=87.2
Q ss_pred CCCCceEEEEEeCChhHHHHHHHHhcCCeeecccCCCCCceEEEEeccCCCCcceEEEeeeccCCCc-cCCCCCeeEEEE
Q 020803 186 TPEPLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTD-YDKGNAYAQIAI 264 (321)
Q Consensus 186 ~~~~l~hi~l~v~D~e~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~-~~~~~~~~hi~f 264 (321)
.+..+.-++|.|+|++.+..||+++||+++..+.. ....++.++ ...+.|.+.+.... .....|+.|++|
T Consensus 7 ~~~~v~~v~L~vrdL~~~~~FY~~ilGL~v~~~~~------~~v~L~vgg---~~LL~L~q~~~a~~~~~~~aGLyH~Af 77 (265)
T COG2514 7 TPTFVGAVTLNVRDLDSMTSFYQEILGLQVLEETD------GSVTLGVGG---TPLLTLEQFPDARRPPPRAAGLYHTAF 77 (265)
T ss_pred CCcEEEEEEEEeccHHHHHHHHHHhhCCeeeeccC------ceEEEeeCC---EEEEEEEeCCCCCCCCccccceeeeee
Confidence 45678999999999999999999999999987654 122333221 35666665443322 245579999999
Q ss_pred EeC---CHHHHHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEEEEEecc
Q 020803 265 GTD---DVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDNV 314 (321)
Q Consensus 265 ~v~---dl~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~ 314 (321)
.++ |+..+..++.+.|+.+. +..++.. ...+||.||+||-||++.++
T Consensus 78 LlP~r~~L~~~l~hl~~~~~~l~-Ga~DH~v--SEAlYl~DPEGNGIEiYaDr 127 (265)
T COG2514 78 LLPTREDLARVLNHLAEEGIPLV-GASDHLV--SEALYLEDPEGNGIEIYADR 127 (265)
T ss_pred ecCCHHHHHHHHHHHHhcCCccc-ccCcchh--heeeeecCCCCCeEEEEecC
Confidence 998 57778889999999876 3333333 57889999999999999874
No 157
>cd08356 Glo_EDI_BRP_like_17 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.26 E-value=8.3e-11 Score=90.25 Aligned_cols=100 Identities=25% Similarity=0.284 Sum_probs=67.6
Q ss_pred EEEEeCCh----hhhhhccCCEEEEEEeCCCCceEEEEeeeCCCCcceEEEEEeecCCCCcCCCCCceEEEEEeCCHHHH
Q 020803 67 VVFPAGDG----RFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVDDVAKT 142 (321)
Q Consensus 67 v~l~V~D~----~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hl~f~v~dl~~~ 142 (321)
..|.|+|+ +||++ |||++..+. . ..+++..+. ..+.+..... .. ..+-.+++|.|+|++++
T Consensus 5 ~~l~v~Dl~~s~~FY~~-LGf~~~~~~----~--~~~~l~~~~----~~l~l~~~~~-~~---~~~~~~~~~~v~did~~ 69 (113)
T cd08356 5 PFIPAKDFAESKQFYQA-LGFELEWEN----D--NLAYFRLGN----CAFYLQDYYV-KD---WAENSMLHLEVDDLEAY 69 (113)
T ss_pred eccccccHHHHHHHHHH-hCCeeEecC----C--CEEEEEcCC----EEEEeecCCC-cc---cccCCEEEEEECCHHHH
Confidence 46889999 99987 999997653 1 135555431 2233322111 11 12234789999999999
Q ss_pred HHHHHHcCCeee-----eCCcccCCCCeEEEEEECCCCcEEEEEe
Q 020803 143 VELIKAKGGKVT-----REPGPVKGGNTVIAFIEDPDGYKFELLE 182 (321)
Q Consensus 143 ~~~l~~~Gv~i~-----~~p~~~~~g~~~~~~~~DPdG~~iel~~ 182 (321)
+++|+++|+++. .++...+. +.+.++|.|||||+|+|.+
T Consensus 70 ~~~l~~~G~~~~~~~~~~~~~~~~~-g~r~f~~~DPdGn~~~~~~ 113 (113)
T cd08356 70 YEHIKALGLPKKFPGVKLPPITQPW-WGREFFLHDPSGVLWHIGQ 113 (113)
T ss_pred HHHHHHcCCcccccceecCccccCC-CcEEEEEECCCccEEEeeC
Confidence 999999998743 23333333 4588999999999999874
No 158
>cd07250 HPPD_C_like C-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HppD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of 4-hydroxyphenylpyruvate to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two,
Probab=99.23 E-value=8.1e-11 Score=98.85 Aligned_cols=98 Identities=20% Similarity=0.323 Sum_probs=72.8
Q ss_pred CCceEEEEEeC--ChhHHHHHHHHhcCCeeecccCCCC--CceEEEEeccCCCCcceEEEeeeccCC--Cc-------cC
Q 020803 188 EPLCQVMLRVG--DLDRSINFYEQAFGMELLRKRDNPE--YKYTIAMMGYGPEDKNVVLELTYNYGV--TD-------YD 254 (321)
Q Consensus 188 ~~l~hi~l~v~--D~e~a~~FY~~vLG~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~lel~~~~~~--~~-------~~ 254 (321)
.+++|+++.|+ |++++++||+++|||+.......++ .......+..+ .....++|...... .. ..
T Consensus 2 ~~iDHv~i~V~~~dl~~a~~fY~~~LGf~~~~~~~~~~~~~~~~s~~l~~~--~g~i~l~L~~~~~~~~~s~~~~fl~~~ 79 (191)
T cd07250 2 TRIDHVVGNVPDGEMDSWVDFYRKVLGFHRFWSFDIEDPYSGLRSRVLASP--DGKIRIPLNEPASGKRKSQIQEFLEYY 79 (191)
T ss_pred ceeeEEEeecChhHHHHHHHHHHHhhCCceeeEEccCcCcccEEEEEEECC--CCcEEEEEecCCCCCCccHHHHHHHHh
Confidence 36899999999 9999999999999999876554332 22333334422 23567777654331 11 12
Q ss_pred CCCCeeEEEEEeCCHHHHHHHHHHCCCeeecCC
Q 020803 255 KGNAYAQIAIGTDDVYKTAEAIKLFGGKVTREP 287 (321)
Q Consensus 255 ~~~~~~hi~f~v~dl~~~~~~l~~~G~~~~~~p 287 (321)
.++|++|+||.|+|+++++++|+++|+++...|
T Consensus 80 ~G~Gv~HIAf~vdDI~~~~~~L~~~Gv~~l~~P 112 (191)
T cd07250 80 GGAGVQHIALATDDIFATVAALRARGVEFLPIP 112 (191)
T ss_pred CCCceeEEEEECCCHHHHHHHHHHcCCeeccCc
Confidence 467999999999999999999999999998776
No 159
>cd07251 Glo_EDI_BRP_like_10 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.22 E-value=2.4e-10 Score=88.25 Aligned_cols=106 Identities=23% Similarity=0.288 Sum_probs=71.7
Q ss_pred EEEEeCCh----hhhhhccCCEEEEEEeCCCCceEEEEeeeCCCCcceEEEEEeecC------CCCcCCCCCceEEEEEe
Q 020803 67 VVFPAGDG----RFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYG------VDKYDIGTGFGHFGIAV 136 (321)
Q Consensus 67 v~l~V~D~----~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~------~~~~~~~~g~~hl~f~v 136 (321)
|.|.|+|+ +||+++|||++..+. +. ..+++..+ +..+.+..... ......+.+..|++|.+
T Consensus 2 i~l~v~d~~~a~~FY~~~lg~~~~~~~---~~--~~~~~~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (121)
T cd07251 2 ITLGVADLARSRAFYEALLGWKPSADS---ND--GVAFFQLG----GLVLALFPREELAKDAGVPVPPPGFSGITLAHNV 72 (121)
T ss_pred eeEeeCCHHHHHHHHHHhcCceecccC---CC--ceEEEEcC----CeEEEEecchhhhhhcCCCCCCCCccceEEEEEc
Confidence 78999999 999999999987551 11 23445432 23444433211 11111222334566665
Q ss_pred ---CCHHHHHHHHHHcCCeeeeCCcccCCCCeEEEEEECCCCcEEEEEe
Q 020803 137 ---DDVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLE 182 (321)
Q Consensus 137 ---~dl~~~~~~l~~~Gv~i~~~p~~~~~g~~~~~~~~DPdG~~iel~~ 182 (321)
+|++++++++++.|+++..++...+. +++.+++.||+||+||+..
T Consensus 73 ~~~~d~~~~~~~l~~~G~~~~~~~~~~~~-g~~~~~~~DP~Gn~iei~~ 120 (121)
T cd07251 73 RSEEEVDAVLARAAAAGATIVKPPQDVFW-GGYSGYFADPDGHLWEVAH 120 (121)
T ss_pred CCHHHHHHHHHHHHhCCCEEecCCccCCC-CceEEEEECCCCCEEEEee
Confidence 57999999999999999877765554 3678999999999999974
No 160
>cd06588 PhnB_like Escherichia coli PhnB and similar proteins; the E. coli phnB gene is found next to an operon involved in the cleavage of carbon-phosphorus bonds in unactivated alkylphosphonates. The Escherichia coli phnB gene is found next to an operon of fourteen genes (phnC-to-phnP) related to the cleavage of carbon-phosphorus (C-P) bonds in unactivated alkylphosphonates, supporting bacterial growth on alkylphosphonates as the sole phosphorus source. It was originally considered part of that operon. PhnB appears to play no direct catalytic role in the usage of alkylphosphonate. Although many of the proteins in this family have been annotated as 3-demethylubiquinone-9 3-methyltransferase enzymes by automatic annotation programs, the experimental evidence for this assignment is lacking. In Escherichia coli, the gene coding 3-demethylubiquinone-9 3-methyltransferase enzyme is ubiG, which belongs to the AdoMet-MTase protein family. PhnB-like proteins adopt a structural fold similar to
Probab=99.18 E-value=1e-09 Score=86.17 Aligned_cols=112 Identities=17% Similarity=0.061 Sum_probs=74.5
Q ss_pred EEEEe-CChhHHHHHHHHhcCCeeecccCCC----------CCceEEEEeccCCCCcceEEEeeeccCCCccCCCCCeeE
Q 020803 193 VMLRV-GDLDRSINFYEQAFGMELLRKRDNP----------EYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQ 261 (321)
Q Consensus 193 i~l~v-~D~e~a~~FY~~vLG~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~~~h 261 (321)
..|.+ .|.++|++||+++||+++......+ .+.+....+..+ +..+.+......... .+....+
T Consensus 3 p~L~~~~~~~eAi~FY~~~fg~~~~~~~~~~~~~~~~~~~~~~~i~ha~l~i~----g~~l~~~d~~~~~~~-~~~~~~~ 77 (128)
T cd06588 3 PYLWFNGNAEEALEFYQSVFGGEITSLTRYGEGPPPDPEEPEGKVMHAELTIG----GQRLMASDGGPGFPF-TFGNGIS 77 (128)
T ss_pred eEEeeCCCHHHHHHHHHHHhCCEeEEEEEcCCCCCCCCCCcCCcEEEEEEEEC----CEEEEEEcCCCCCCC-CCCCCEE
Confidence 34667 8999999999999999988655321 122223333322 234434332211111 1233457
Q ss_pred EEEEeCC---HHHHHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEEEEE
Q 020803 262 IAIGTDD---VYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFV 311 (321)
Q Consensus 262 i~f~v~d---l~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~ 311 (321)
+++.|+| +++++++|.+.| ++..+|...+++ .+.++++||+|+.|+|.
T Consensus 78 l~i~~~~~e~v~~~~~~l~~~g-~~~~~~~~~~~g-~~~~~v~Dp~G~~W~i~ 128 (128)
T cd06588 78 LSVECDSEEEADRLFEALSEGG-TVLMPLQKTFWS-PLFGWVTDRFGVSWQIN 128 (128)
T ss_pred EEEECCCHHHHHHHHHHHhcCC-eEeccchhcCcc-cccEEEECCCCCEEEeC
Confidence 8999886 778889987766 888888887876 48999999999999973
No 161
>COG3565 Predicted dioxygenase of extradiol dioxygenase family [General function prediction only]
Probab=99.17 E-value=4.5e-10 Score=82.62 Aligned_cols=120 Identities=21% Similarity=0.210 Sum_probs=78.2
Q ss_pred CceEEEEEeCChhHHHHHHHHhcCCeeecccCCCCCceEEEEeccCCCCcceEEEeeeccCCCc---c-CCCCCeeEE--
Q 020803 189 PLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTD---Y-DKGNAYAQI-- 262 (321)
Q Consensus 189 ~l~hi~l~v~D~e~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~---~-~~~~~~~hi-- 262 (321)
.+-|+++.|.|++++++||.++||.+..++.+ .+..+.+- + ...+..+....+... . ..+-...|+
T Consensus 4 ~~FHLA~pV~Dl~~tr~FYgevlG~~~GRstd----~wvdfDfy-G---HQ~v~Hl~~q~~~~~~g~V~~~~v~~pHfGv 75 (138)
T COG3565 4 VPFHLAIPVNDLDETRRFYGEVLGCKEGRSTD----TWVDFDFY-G---HQVVAHLTPQPDSQGSGKVDGHGVPPPHFGV 75 (138)
T ss_pred cceEEeeeccccHHHHhhhhhhcccccccccc----eEEEeeec-c---cEEEEEecCCcccccCcccCCCCCCCccceE
Confidence 35799999999999999999999999876543 12222111 0 123333332111111 1 111123354
Q ss_pred EEEeCCHHHHHHHHHHCCCeeecCCccCCC---CCceEEEEECCCCCEEEEEecccc
Q 020803 263 AIGTDDVYKTAEAIKLFGGKVTREPGPLPG---INTKITACLDPDGWKTVFVDNVDF 316 (321)
Q Consensus 263 ~f~v~dl~~~~~~l~~~G~~~~~~p~~~~~---~~~~~~~~~DPdG~~iel~~~~~~ 316 (321)
-|.++|--++.++|+++|+.+..+|.-.-. +..+.+++.||.||.+|+-.-.++
T Consensus 76 Vl~~edW~alaerlea~gi~~~i~P~vRF~Ge~gEq~TlFl~DP~gN~lEfK~fR~~ 132 (138)
T COG3565 76 VLPVEDWFALAERLEAAGIPFHIPPKVRFKGEPGEQRTLFLFDPSGNALEFKGFRDQ 132 (138)
T ss_pred EEEHHHHHHHHHHHHHcCCCcccCceEEecCCccceEEEEEECCCCCeeeeecccch
Confidence 455789999999999999999888854321 224788999999999999665443
No 162
>COG2764 PhnB Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.14 E-value=2.3e-09 Score=83.79 Aligned_cols=116 Identities=17% Similarity=0.174 Sum_probs=83.6
Q ss_pred EEEeC-ChhHHHHHHHHhcCCeeecccCCCC----------CceEEEEeccCCCCcceEEEeeeccCCCccCCC-CCeeE
Q 020803 194 MLRVG-DLDRSINFYEQAFGMELLRKRDNPE----------YKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKG-NAYAQ 261 (321)
Q Consensus 194 ~l~v~-D~e~a~~FY~~vLG~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~-~~~~h 261 (321)
-|..+ |-++|++||+++||.++..+....+ +......+..+ +..+-+....+......+ +....
T Consensus 5 Yl~f~gn~~~Al~fY~~vFgae~~~~~~~~d~~~~~~~~~~~~i~HA~l~i~----g~~im~sd~~~~~~~~~~~~~s~~ 80 (136)
T COG2764 5 YLFFNGNAREALAFYKEVFGAEELKRVPFGDMPSSAGEPPGGRIMHAELRIG----GSTIMLSDAFPDMGATEGGGTSLS 80 (136)
T ss_pred EEEECCCHHHHHHHHHHHhCceEEEEEEcCccCccccccccCceEEEEEEEC----CEEEEEecCCCccCcccCCCeeEE
Confidence 46777 9999999999999999987776555 33333334332 233333322222121222 23345
Q ss_pred EEEEeCCHHHHHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEEEEEecc
Q 020803 262 IAIGTDDVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDNV 314 (321)
Q Consensus 262 i~f~v~dl~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~ 314 (321)
+.+.++|++++++++.+.|+++..++....|+. ++..++||.|+.|-|....
T Consensus 81 l~~~~~d~da~f~~a~~aGa~v~mpl~~~fwG~-r~G~v~D~fGv~W~l~~~~ 132 (136)
T COG2764 81 LDLYVEDVDAVFERAAAAGATVVMPLEDTFWGD-RYGQVTDPFGVVWMLNTPV 132 (136)
T ss_pred EEEEehHHHHHHHHHHhcCCeEEecchhcCccc-ceEEEECCCCCEEEEecCc
Confidence 777788999999999999999999999888884 8999999999999998764
No 163
>COG3607 Predicted lactoylglutathione lyase [General function prediction only]
Probab=99.10 E-value=1.4e-09 Score=81.56 Aligned_cols=114 Identities=21% Similarity=0.213 Sum_probs=75.0
Q ss_pred ceEEEEEeCChhHHHHHHHHhcCCeeecccCCCCCceEEEEeccCCCCcceEEEeeecc---CCC----ccCCCCCeeEE
Q 020803 190 LCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNY---GVT----DYDKGNAYAQI 262 (321)
Q Consensus 190 l~hi~l~v~D~e~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~---~~~----~~~~~~~~~hi 262 (321)
...|.|.|+|+++|.+||+. |||+......++.. ....... ...+-|.... .-. .....+.-.-+
T Consensus 4 mIFvNLPVkDL~~S~~Fy~a-lGfk~Npq~sde~a--~~mi~~~-----ni~vMLL~~~~fq~F~~~~i~dt~~s~evli 75 (133)
T COG3607 4 MIFVNLPVKDLEASKAFYTA-LGFKFNPQFSDEDA--ACMIISD-----NIFVMLLEEARFQTFTKRQIADTTKSREVLI 75 (133)
T ss_pred EEEEecchhhHHHHHHHHHH-hCcccCCCcccccc--eeEEEec-----cEEEEEeccHHhhhhcccccccccCCceEEE
Confidence 45688999999999999977 99998765544322 1111110 2222222211 000 11223355678
Q ss_pred EEEeC---CHHHHHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEEEEEec
Q 020803 263 AIGTD---DVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDN 313 (321)
Q Consensus 263 ~f~v~---dl~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~~ 313 (321)
|+++. +++++.+++.++|++...+|..... .+...|.|||||.||++-.
T Consensus 76 ~ls~~s~eevd~~v~ka~eaGGk~~~~~~d~gf--MYg~~fqDpDGh~wE~l~m 127 (133)
T COG3607 76 SLSAGSREEVDELVDKALEAGGKPANEPQDEGF--MYGRSFQDPDGHVWEFLWM 127 (133)
T ss_pred EeccCcHHHHHHHHHHHHHcCCCCCCCcccccc--ccceeeeCCCCCeEEEEEe
Confidence 88885 6999999999999998776654332 4677899999999999754
No 164
>cd07250 HPPD_C_like C-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HppD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of 4-hydroxyphenylpyruvate to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two,
Probab=99.03 E-value=2.3e-09 Score=90.02 Aligned_cols=95 Identities=25% Similarity=0.289 Sum_probs=70.0
Q ss_pred eeceEEEEEeC--Ch----hhhhhccCCEEEEEEeCCC--CceEEEEeeeCCCCcceEEEEEeecCC--CC-------cC
Q 020803 62 FFPLIVVFPAG--DG----RFYTECLGMKLLRKRDIPE--EKYTNAFLGYGPEDSHFVIELTYNYGV--DK-------YD 124 (321)
Q Consensus 62 ~~i~Hv~l~V~--D~----~FY~~vLG~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~l~l~~~~~~--~~-------~~ 124 (321)
.+++||++.|+ |+ +||+++|||+.......++ .......+..+ .....++|...... .+ ..
T Consensus 2 ~~iDHv~i~V~~~dl~~a~~fY~~~LGf~~~~~~~~~~~~~~~~s~~l~~~--~g~i~l~L~~~~~~~~~s~~~~fl~~~ 79 (191)
T cd07250 2 TRIDHVVGNVPDGEMDSWVDFYRKVLGFHRFWSFDIEDPYSGLRSRVLASP--DGKIRIPLNEPASGKRKSQIQEFLEYY 79 (191)
T ss_pred ceeeEEEeecChhHHHHHHHHHHHhhCCceeeEEccCcCcccEEEEEEECC--CCcEEEEEecCCCCCCccHHHHHHHHh
Confidence 47999999999 99 9999999999887655433 23444555532 23456666653331 11 12
Q ss_pred CCCCceEEEEEeCCHHHHHHHHHHcCCeeeeCCc
Q 020803 125 IGTGFGHFGIAVDDVAKTVELIKAKGGKVTREPG 158 (321)
Q Consensus 125 ~~~g~~hl~f~v~dl~~~~~~l~~~Gv~i~~~p~ 158 (321)
.+.|+.|+||.|+|+++++++|+++|+++...|.
T Consensus 80 ~G~Gv~HIAf~vdDI~~~~~~L~~~Gv~~l~~P~ 113 (191)
T cd07250 80 GGAGVQHIALATDDIFATVAALRARGVEFLPIPD 113 (191)
T ss_pred CCCceeEEEEECCCHHHHHHHHHHcCCeeccCch
Confidence 4679999999999999999999999999987664
No 165
>COG0346 GloA Lactoylglutathione lyase and related lyases [Amino acid transport and metabolism]
Probab=99.03 E-value=1.2e-09 Score=84.95 Aligned_cols=121 Identities=20% Similarity=0.246 Sum_probs=74.8
Q ss_pred CceEEEEEeCChhHHHHHHHHhcCCeeecccCCCCCc---eEEEEeccCCC--CcceEE------EeeeccCCC-ccCCC
Q 020803 189 PLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYK---YTIAMMGYGPE--DKNVVL------ELTYNYGVT-DYDKG 256 (321)
Q Consensus 189 ~l~hi~l~v~D~e~a~~FY~~vLG~~~~~~~~~~~~~---~~~~~~~~~~~--~~~~~l------el~~~~~~~-~~~~~ 256 (321)
+++|++|.|+|+++|++||+++||+++.......... ........... ...... +........ .....
T Consensus 2 ~l~hv~l~v~dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (138)
T COG0346 2 GIHHVTLAVPDLEASIDFYTDVLGLRLVKDTVNEADDGGGYHLLFLDGDGGPGELLAFFGFEGRAGTGFVGDVALGVPGG 81 (138)
T ss_pred ceEEEEEeeCCHhHhHHHHHhhcCCeeeeecccccCCceEEEEEeccCCCCcccceeecccccccccccccceEEeecCc
Confidence 5899999999999999999999999998765433221 11222211100 000000 000000000 00111
Q ss_pred -CCeeEEEEEeCC---HHHHHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEEEEEe
Q 020803 257 -NAYAQIAIGTDD---VYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVD 312 (321)
Q Consensus 257 -~~~~hi~f~v~d---l~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~ 312 (321)
.+..|+++.+++ ...........|..+...+. .++ +..+|++||||+.||+++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~--~~~~~~~dp~g~~~e~~~ 138 (138)
T COG0346 82 DLGLGHLAFEVDDEAFGDAALAFLDPDGVRIELGEP-GRG--GVHVYFRDPDGILIELAT 138 (138)
T ss_pred hhccCceeEecccccccceEEEeeCCCCCEEEeecC-CCc--ceEEEEECCCCcEEEeeC
Confidence 246899999998 77777888888988765443 223 248999999999999974
No 166
>TIGR01263 4HPPD 4-hydroxyphenylpyruvate dioxygenase. This protein oxidizes 4-hydroxyphenylpyruvate, a tyrosine and phenylalanine catabolite, to homogentisate. Homogentisate can undergo a further non-enzymatic oxidation and polymerization into brown pigments that protect some bacterial species from light. A similar process occurs spontaneously in blood and is hemolytic (see PubMed:8000039). In some bacterial species, this enzyme has been studied as a hemolysin.
Probab=98.94 E-value=2.8e-08 Score=91.59 Aligned_cols=121 Identities=20% Similarity=0.218 Sum_probs=82.0
Q ss_pred CceEEEEEeCChhHHHHHHHHhcCCeeecccCCCCCceEEEEeccCCCCcceEEEeeeccCCCc------cCCCCCeeEE
Q 020803 189 PLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTD------YDKGNAYAQI 262 (321)
Q Consensus 189 ~l~hi~l~v~D~e~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~------~~~~~~~~hi 262 (321)
+++|+.+.|+|++++++||.+.|||+........... ....+.. +...+++........ ...+++..|+
T Consensus 2 ~i~hi~~~V~D~~~a~~~y~~~LGf~~~~~~~~~~~~-~~~~~~~----G~~~l~L~~~~~~~s~~~~~~~~hg~gv~~i 76 (353)
T TIGR01263 2 GFDFVEFYVGDAKQAAYYYFTRFGFEKVAKETGHREK-ASHVLRQ----GQINFVLTAPYSSDSPAADFAAKHGDGVKDV 76 (353)
T ss_pred ceEEEEEEeCCHHHHHHHHHHhcCCcEEEEeecCCce-eEEEEEe----CCEEEEEecCCCCCchHHHHHHhCCCceEEE
Confidence 5899999999999999999999999987652212221 2222332 245666664332211 1356789999
Q ss_pred EEEeCCHHHHHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEEEEEecc
Q 020803 263 AIGTDDVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDNV 314 (321)
Q Consensus 263 ~f~v~dl~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~ 314 (321)
||.|+|++++++++.++|+++..+|.....+.-+...++-+.|..+-|+++.
T Consensus 77 af~V~Dv~~a~~~l~~~Ga~~v~~p~~~~~g~~~~~~i~~~g~~~~~~i~~~ 128 (353)
T TIGR01263 77 AFRVDDAAAAFEAAVERGAEPVQAPVELDEGAVTLATIKGIGDVVHTLVDRG 128 (353)
T ss_pred EEEECCHHHHHHHHHHCCCEeccCCccCCCCeEEEEEEECcCCCEEEEEcCC
Confidence 9999999999999999999998877543111123334566666666666543
No 167
>COG3565 Predicted dioxygenase of extradiol dioxygenase family [General function prediction only]
Probab=98.92 E-value=7.8e-09 Score=76.14 Aligned_cols=113 Identities=28% Similarity=0.336 Sum_probs=73.0
Q ss_pred eceEEEEEeCCh----hhhhhccCCEEEEEEeCCCCceEEEEeeeCCCCcceEEEEEeecCCCC--c--CCCCCceEEE-
Q 020803 63 FPLIVVFPAGDG----RFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDK--Y--DIGTGFGHFG- 133 (321)
Q Consensus 63 ~i~Hv~l~V~D~----~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~--~--~~~~g~~hl~- 133 (321)
.+-|++|.|+|+ +||+++||++.-.+.. ..+-+.. -+.+..+-+........ . ..+--..|++
T Consensus 4 ~~FHLA~pV~Dl~~tr~FYgevlG~~~GRstd------~wvdfDf--yGHQ~v~Hl~~q~~~~~~g~V~~~~v~~pHfGv 75 (138)
T COG3565 4 VPFHLAIPVNDLDETRRFYGEVLGCKEGRSTD------TWVDFDF--YGHQVVAHLTPQPDSQGSGKVDGHGVPPPHFGV 75 (138)
T ss_pred cceEEeeeccccHHHHhhhhhhcccccccccc------eEEEeee--cccEEEEEecCCcccccCcccCCCCCCCccceE
Confidence 478999999999 9999999999744321 1111211 12223333332221111 0 1111234554
Q ss_pred -EEeCCHHHHHHHHHHcCCeeeeCCcccC---CCCeEEEEEECCCCcEEEEEec
Q 020803 134 -IAVDDVAKTVELIKAKGGKVTREPGPVK---GGNTVIAFIEDPDGYKFELLER 183 (321)
Q Consensus 134 -f~v~dl~~~~~~l~~~Gv~i~~~p~~~~---~g~~~~~~~~DPdG~~iel~~~ 183 (321)
|.++|.-++.+||+++|+....+|...- .|..+.+|+.||.||.+|+-..
T Consensus 76 Vl~~edW~alaerlea~gi~~~i~P~vRF~Ge~gEq~TlFl~DP~gN~lEfK~f 129 (138)
T COG3565 76 VLPVEDWFALAERLEAAGIPFHIPPKVRFKGEPGEQRTLFLFDPSGNALEFKGF 129 (138)
T ss_pred EEEHHHHHHHHHHHHHcCCCcccCceEEecCCccceEEEEEECCCCCeeeeecc
Confidence 6778999999999999999887775432 2567889999999999998654
No 168
>PF13468 Glyoxalase_3: Glyoxalase-like domain; PDB: 3P8A_B.
Probab=98.87 E-value=8.1e-08 Score=79.57 Aligned_cols=143 Identities=20% Similarity=0.243 Sum_probs=83.2
Q ss_pred ceEEEEEeCCh----hhhhhccCCEEEEEEeCCCCceEEEEeeeCCCCcceEEEEEeecCC--C---C--c-----CCCC
Q 020803 64 PLIVVFPAGDG----RFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGV--D---K--Y-----DIGT 127 (321)
Q Consensus 64 i~Hv~l~V~D~----~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~--~---~--~-----~~~~ 127 (321)
|+|+.+.|+|+ ++|++.|||++......+..+.....+.+++ . .+|+....+. . . + ..+.
T Consensus 1 lDH~v~~v~dl~~a~~~~~~~lGf~~~~gg~h~~~GT~N~li~f~~---~-YlEli~i~~~~~~~~~~~~~~~~~~~~~~ 76 (175)
T PF13468_consen 1 LDHLVIAVRDLDAAVERFEQRLGFTVTPGGEHPGWGTANALIPFGD---G-YLELIAIDPEAPAPDRGRWFGLDRLAGGE 76 (175)
T ss_dssp EEEEEEE-TTGGG----GGGS--S--EEEEE-TTT-EEEEEEE-SS---S-EEEEEEES-HHHSTGGGT-TTTHHHHT--
T ss_pred CCEEEEEcCCHHHHHHhhhhcceEeecCCCcCCCCccEEEEEeeCC---c-eEEEEEeCCcccccccccceechhhcCCC
Confidence 68999999999 8898889999998877666455555555543 3 6777653221 1 0 0 2467
Q ss_pred CceEEEEEeCCHHHHHHHHHHcCCeeeeCCcccCCCC--eEEEEEECC----CCcEEEEEecCCC----------CCCce
Q 020803 128 GFGHFGIAVDDVAKTVELIKAKGGKVTREPGPVKGGN--TVIAFIEDP----DGYKFELLERGPT----------PEPLC 191 (321)
Q Consensus 128 g~~hl~f~v~dl~~~~~~l~~~Gv~i~~~p~~~~~g~--~~~~~~~DP----dG~~iel~~~~~~----------~~~l~ 191 (321)
|+.++|+.++|+++..++|++.|+... .+....++. -+.+++.|+ .+..-.+++.... ..+|.
T Consensus 77 g~~~~~l~t~d~~~~~~~l~~~G~~~~-~r~~~dG~~~~w~~~~~~~~~~p~~~~~Pf~i~~~~~~~~~~~h~ng~~~i~ 155 (175)
T PF13468_consen 77 GLYGWALRTDDIEAVAARLRAAGLDAG-SRVRPDGGDLRWRLAFPEDGALPFGGLLPFFIQWETPHPEWARHPNGALGIT 155 (175)
T ss_dssp EEEEEEEE-S-HHHHHHHHHTTT-EEE-EEEEEEE-EEEEEEEEEE-SS---SS---EEEEESS-CCHHTTT--TTEEEE
T ss_pred CeEEEEEecCCHHHHHHHHHhcCCCCC-CcCcCCCCcceEEEEEeCCcccccCCCCcEEEEeCCCCcccccCCCccceEE
Confidence 899999999999999999999998621 111111111 133556664 2556677754331 23699
Q ss_pred EEEEEeCChhHHHHHHHHhc
Q 020803 192 QVMLRVGDLDRSINFYEQAF 211 (321)
Q Consensus 192 hi~l~v~D~e~a~~FY~~vL 211 (321)
++.+.++|.+++.++|.++|
T Consensus 156 ~v~i~~~d~~~~~~~~~~l~ 175 (175)
T PF13468_consen 156 RVVIAVPDPDAAAARYARLL 175 (175)
T ss_dssp EEEEEETTHHHHHHHHHHH-
T ss_pred EEEEEeCCHHHHHHHHHhhC
Confidence 99999999999999999875
No 169
>COG2764 PhnB Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.76 E-value=6.1e-07 Score=70.21 Aligned_cols=113 Identities=20% Similarity=0.181 Sum_probs=81.0
Q ss_pred EEEeC-Ch----hhhhhccCCEEEEEEeCCC----------CceEEEEeeeCCCCcceEEEEEeecCCCCcCCCCCc-eE
Q 020803 68 VFPAG-DG----RFYTECLGMKLLRKRDIPE----------EKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGF-GH 131 (321)
Q Consensus 68 ~l~V~-D~----~FY~~vLG~~~~~~~~~~~----------~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~~~g~-~h 131 (321)
-|.++ |. +||+++||.++..+....+ +..-.+-|.++. ..+-+....+......+++. ..
T Consensus 5 Yl~f~gn~~~Al~fY~~vFgae~~~~~~~~d~~~~~~~~~~~~i~HA~l~i~g----~~im~sd~~~~~~~~~~~~~s~~ 80 (136)
T COG2764 5 YLFFNGNAREALAFYKEVFGAEELKRVPFGDMPSSAGEPPGGRIMHAELRIGG----STIMLSDAFPDMGATEGGGTSLS 80 (136)
T ss_pred EEEECCCHHHHHHHHHHHhCceEEEEEEcCccCccccccccCceEEEEEEECC----EEEEEecCCCccCcccCCCeeEE
Confidence 35566 66 9999999999999877766 455566666652 23333333222222223332 24
Q ss_pred EEEEeCCHHHHHHHHHHcCCeeeeCCcccCCCCeEEEEEECCCCcEEEEEecCC
Q 020803 132 FGIAVDDVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGP 185 (321)
Q Consensus 132 l~f~v~dl~~~~~~l~~~Gv~i~~~p~~~~~g~~~~~~~~DPdG~~iel~~~~~ 185 (321)
|.+.+.|++++++++.+.|+++..++....+ +.++..++||.|+.|.|....+
T Consensus 81 l~~~~~d~da~f~~a~~aGa~v~mpl~~~fw-G~r~G~v~D~fGv~W~l~~~~~ 133 (136)
T COG2764 81 LDLYVEDVDAVFERAAAAGATVVMPLEDTFW-GDRYGQVTDPFGVVWMLNTPVE 133 (136)
T ss_pred EEEEehHHHHHHHHHHhcCCeEEecchhcCc-ccceEEEECCCCCEEEEecCcc
Confidence 6778889999999999999999998888777 4578899999999999986543
No 170
>PRK01037 trmD tRNA (guanine-N(1)-)-methyltransferase/unknown domain fusion protein; Reviewed
Probab=98.73 E-value=1.2e-07 Score=84.49 Aligned_cols=106 Identities=23% Similarity=0.353 Sum_probs=71.7
Q ss_pred CCceEEEEEeCChhHHHHHHHHhcCCeeecccCCCCCceEEEEeccCCCCcceEEEeeeccCCCccCCCCCeeEEEEEeC
Q 020803 188 EPLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGTD 267 (321)
Q Consensus 188 ~~l~hi~l~v~D~e~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~~~hi~f~v~ 267 (321)
.+..||+|.|.|+++|.+||+++|++.. ...+ . .. .++ +....+-+.+. ......-.-+|++++
T Consensus 246 ~~~IfVNLpV~DL~rS~~FYt~LF~~n~-Fsde----~-a~-cm~----dtI~vMllt~~-----D~~~~~evLl~Ls~~ 309 (357)
T PRK01037 246 PKTFSVVLEVQDLRRAKKFYSKMFGLEC-WDGD----K-LF-LLG----KTSLYLQQTKA-----EKKNRGTTTLSLELE 309 (357)
T ss_pred CceEEEEeeeCCHHHHHHHHHHHhCCCC-CCCC----c-cc-ccc----CcEEEEEecCC-----CCCCcceEEEEeccC
Confidence 5678999999999999999999988875 2221 1 11 111 11233333322 122334567888886
Q ss_pred ---CHHHHHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEEEEEec
Q 020803 268 ---DVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDN 313 (321)
Q Consensus 268 ---dl~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~~ 313 (321)
++|++++++.++|++...+|.++.. .--|.|||||.||++-.
T Consensus 310 Sre~VD~lv~~A~aaGG~~~~~~~D~Gf----~rsf~D~DGH~WEi~~~ 354 (357)
T PRK01037 310 CEHDFVRFLRRWEMLGGELGEQADGHFP----LRLVFDLDGHIWVVSCV 354 (357)
T ss_pred CHHHHHHHHHHHHHcCCCCCCCcccccC----cceeECCCCCEEEEEEE
Confidence 5999999999999976555443322 56799999999999853
No 171
>cd06588 PhnB_like Escherichia coli PhnB and similar proteins; the E. coli phnB gene is found next to an operon involved in the cleavage of carbon-phosphorus bonds in unactivated alkylphosphonates. The Escherichia coli phnB gene is found next to an operon of fourteen genes (phnC-to-phnP) related to the cleavage of carbon-phosphorus (C-P) bonds in unactivated alkylphosphonates, supporting bacterial growth on alkylphosphonates as the sole phosphorus source. It was originally considered part of that operon. PhnB appears to play no direct catalytic role in the usage of alkylphosphonate. Although many of the proteins in this family have been annotated as 3-demethylubiquinone-9 3-methyltransferase enzymes by automatic annotation programs, the experimental evidence for this assignment is lacking. In Escherichia coli, the gene coding 3-demethylubiquinone-9 3-methyltransferase enzyme is ubiG, which belongs to the AdoMet-MTase protein family. PhnB-like proteins adopt a structural fold similar to
Probab=98.73 E-value=5.6e-07 Score=70.48 Aligned_cols=106 Identities=16% Similarity=0.191 Sum_probs=68.4
Q ss_pred EEEe-CCh----hhhhhccCCEEEEEEeC----------CCCceEEEEeeeCCCCcceEEEEEeecCCCCcCCCCCceEE
Q 020803 68 VFPA-GDG----RFYTECLGMKLLRKRDI----------PEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHF 132 (321)
Q Consensus 68 ~l~V-~D~----~FY~~vLG~~~~~~~~~----------~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hl 132 (321)
-|.+ .|. +||+++||+++...... .++....+.+..++ ..+-+...........+ +-.++
T Consensus 4 ~L~~~~~~~eAi~FY~~~fg~~~~~~~~~~~~~~~~~~~~~~~i~ha~l~i~g----~~l~~~d~~~~~~~~~~-~~~~l 78 (128)
T cd06588 4 YLWFNGNAEEALEFYQSVFGGEITSLTRYGEGPPPDPEEPEGKVMHAELTIGG----QRLMASDGGPGFPFTFG-NGISL 78 (128)
T ss_pred EEeeCCCHHHHHHHHHHHhCCEeEEEEEcCCCCCCCCCCcCCcEEEEEEEECC----EEEEEEcCCCCCCCCCC-CCEEE
Confidence 4566 666 99999999999877542 12333445555542 23333322211111122 33468
Q ss_pred EEEeCC---HHHHHHHHHHcCCeeeeCCcccCCCCeEEEEEECCCCcEEEE
Q 020803 133 GIAVDD---VAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFEL 180 (321)
Q Consensus 133 ~f~v~d---l~~~~~~l~~~Gv~i~~~p~~~~~g~~~~~~~~DPdG~~iel 180 (321)
++.|+| +++++++|++.| ++..++...+. +.+..+++||+|+.|+|
T Consensus 79 ~i~~~~~e~v~~~~~~l~~~g-~~~~~~~~~~~-g~~~~~v~Dp~G~~W~i 127 (128)
T cd06588 79 SVECDSEEEADRLFEALSEGG-TVLMPLQKTFW-SPLFGWVTDRFGVSWQI 127 (128)
T ss_pred EEECCCHHHHHHHHHHHhcCC-eEeccchhcCc-ccccEEEECCCCCEEEe
Confidence 999986 777889987655 88777776665 35678999999999987
No 172
>COG0346 GloA Lactoylglutathione lyase and related lyases [Amino acid transport and metabolism]
Probab=98.66 E-value=8e-08 Score=74.42 Aligned_cols=117 Identities=24% Similarity=0.369 Sum_probs=70.8
Q ss_pred eceEEEEEeCCh----hhhhhccCCEEEEEEeCCCCc---eEEEEeeeCCCCcceEEEE--------EeecCCC-CcCCC
Q 020803 63 FPLIVVFPAGDG----RFYTECLGMKLLRKRDIPEEK---YTNAFLGYGPEDSHFVIEL--------TYNYGVD-KYDIG 126 (321)
Q Consensus 63 ~i~Hv~l~V~D~----~FY~~vLG~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~l~l--------~~~~~~~-~~~~~ 126 (321)
+++||+|.|+|+ +||+++||+++..+....... ....+.............. ....... ....+
T Consensus 2 ~l~hv~l~v~dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (138)
T COG0346 2 GIHHVTLAVPDLEASIDFYTDVLGLRLVKDTVNEADDGGGYHLLFLDGDGGPGELLAFFGFEGRAGTGFVGDVALGVPGG 81 (138)
T ss_pred ceEEEEEeeCCHhHhHHHHHhhcCCeeeeecccccCCceEEEEEeccCCCCcccceeecccccccccccccceEEeecCc
Confidence 689999999999 999999999998875433221 1112221110000000000 0000000 00111
Q ss_pred -CCceEEEEEeCC---HHHHHHHHHHcCCeeeeCCcccCCCCeEEEEEECCCCcEEEEEe
Q 020803 127 -TGFGHFGIAVDD---VAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLE 182 (321)
Q Consensus 127 -~g~~hl~f~v~d---l~~~~~~l~~~Gv~i~~~p~~~~~g~~~~~~~~DPdG~~iel~~ 182 (321)
.+..|+++.+++ ...........|..+...+. ... +..+|+.||||+++|+++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~--~~~~~~~dp~g~~~e~~~ 138 (138)
T COG0346 82 DLGLGHLAFEVDDEAFGDAALAFLDPDGVRIELGEP-GRG--GVHVYFRDPDGILIELAT 138 (138)
T ss_pred hhccCceeEecccccccceEEEeeCCCCCEEEeecC-CCc--ceEEEEECCCCcEEEeeC
Confidence 347799999998 67777788888888765443 222 227999999999999974
No 173
>KOG0638 consensus 4-hydroxyphenylpyruvate dioxygenase [Amino acid transport and metabolism]
Probab=98.52 E-value=2.4e-07 Score=80.38 Aligned_cols=130 Identities=15% Similarity=0.180 Sum_probs=85.5
Q ss_pred CCceEEEEEeCChhHHHHHHHHhcCCeeecccCCCCCc--eEEEEeccCCCCcceEEEeeeccCCC-----ccCCCCCee
Q 020803 188 EPLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYK--YTIAMMGYGPEDKNVVLELTYNYGVT-----DYDKGNAYA 260 (321)
Q Consensus 188 ~~l~hi~l~v~D~e~a~~FY~~vLG~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~lel~~~~~~~-----~~~~~~~~~ 260 (321)
.+++||.+.|.|...++.||+..|||++......+.+. +.-..++. +.....+.-..+++.. -..++.+.-
T Consensus 16 l~f~Hi~F~vgna~q~A~~y~~~fGfep~A~~~letg~~~~~s~alr~--g~~vFv~~s~~~p~~~~~G~~l~~Hgdgvk 93 (381)
T KOG0638|consen 16 LRFHHIEFWVGNAKQAARWYCSGFGFEPLAYRGLETGSREWASHALRQ--GKIVFVFNSAYNPDNSEYGDHLVKHGDGVK 93 (381)
T ss_pred eeeeEEEEEecCcHHHHHHHHhhcCCcchhcccccccchHHHHHHhhc--CCEEEEEecCCCCCchhhhhhhhhcccchh
Confidence 47999999999999999999999999987644322111 11111111 1011111111111110 123555777
Q ss_pred EEEEEeCCHHHHHHHHHHCCCeeecCCccCCCC--CceEEEEECCCCCEEEEEeccccccc
Q 020803 261 QIAIGTDDVYKTAEAIKLFGGKVTREPGPLPGI--NTKITACLDPDGWKTVFVDNVDFLKE 319 (321)
Q Consensus 261 hi~f~v~dl~~~~~~l~~~G~~~~~~p~~~~~~--~~~~~~~~DPdG~~iel~~~~~~~~~ 319 (321)
-+||+|+|++++.+.+.++|++++.+|...... .-+++.++-+.-...-+++++.++.+
T Consensus 94 dvafeVeD~da~~~~~va~Ga~v~~~p~~~~da~G~v~~A~l~tygd~thtlvEr~~y~g~ 154 (381)
T KOG0638|consen 94 DVAFEVEDADAIFQEAVANGAKVVRPPWEESDAQGAVTYAVLKTYGDTTHTLVERKGYKGP 154 (381)
T ss_pred ceEEEecchHHHHHHHHHcCCcccCCcceeeccCCcEEEEEEecccchhhhhhhhcccccc
Confidence 899999999999999999999999998765432 23777888887777777777766543
No 174
>PF14506 CppA_N: CppA N-terminal; PDB: 3E0R_D.
Probab=98.50 E-value=4.2e-06 Score=62.70 Aligned_cols=110 Identities=25% Similarity=0.362 Sum_probs=60.1
Q ss_pred eEEEEEeCCh----hhhhhccCCEEEEEEeCCCCceEEEEeeeCCCCcceEEEEEeecCCCCcCCCCCceEEEEEeCCHH
Q 020803 65 LIVVFPAGDG----RFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVDDVA 140 (321)
Q Consensus 65 ~Hv~l~V~D~----~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hl~f~v~dl~ 140 (321)
.+-+|.|+|. +||+++|||++..... .+++++.......+.++-++............++++.+.|++..
T Consensus 2 ~~PvlRVnnR~~ni~FY~~~LGfkll~EEn------a~a~lg~~~~~erlvlEESP~~rtr~V~G~KKl~~ivIkv~~~~ 75 (125)
T PF14506_consen 2 IIPVLRVNNRDLNIDFYQKTLGFKLLSEEN------ALAILGDQQKEERLVLEESPSMRTRAVEGPKKLNRIVIKVPNPK 75 (125)
T ss_dssp EEEEEEESSHHHHHHHHTTTT--EEEEEET------TEEEEE-TT--EEEEEEE--TTT-B--SSS-SEEEEEEEESSHH
T ss_pred cCceEEEcCHHHhHHHHHhccCcEEeeccc------cEEEecCCCCceEEEEecCCccccccccCcceeeEEEEEcCCHH
Confidence 4668999998 9999999999988742 35677654333334444333222223344557899999999987
Q ss_pred HHHHHHHHcCCeeeeCCcccCCCCeEEEEEECCCCcEEEEEecC
Q 020803 141 KTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERG 184 (321)
Q Consensus 141 ~~~~~l~~~Gv~i~~~p~~~~~g~~~~~~~~DPdG~~iel~~~~ 184 (321)
+ ++.|.++|.++..- ..+..+..+-..+|+|+.+.+....
T Consensus 76 E-Ie~LLar~~~~~~l---~kg~~gyAfe~vSPEgd~~llhaEd 115 (125)
T PF14506_consen 76 E-IEALLARGAQYDRL---YKGKNGYAFEAVSPEGDRFLLHAED 115 (125)
T ss_dssp H-HHHHHHC-S--SEE---EE-SSSEEEEEE-TT--EEEEE--S
T ss_pred H-HHHHHhccccccee---EEcCCceEEEEECCCCCEEEEEEcC
Confidence 7 45566777664321 1122334455679999999998653
No 175
>PRK10148 hypothetical protein; Provisional
Probab=98.49 E-value=8.7e-06 Score=65.29 Aligned_cols=116 Identities=16% Similarity=0.083 Sum_probs=74.4
Q ss_pred EEEeC-ChhHHHHHHHHhcCCeeecccCC--------------------CCCceEEEEeccCCCCcceEEEeeeccCCCc
Q 020803 194 MLRVG-DLDRSINFYEQAFGMELLRKRDN--------------------PEYKYTIAMMGYGPEDKNVVLELTYNYGVTD 252 (321)
Q Consensus 194 ~l~v~-D~e~a~~FY~~vLG~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~ 252 (321)
-|... |-++|++||+++||.++...... +++......+..+ +..+-+.... . .
T Consensus 6 yL~f~g~a~eAi~FY~~~Fgae~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Ha~l~i~----g~~lm~sD~~-~-~ 79 (147)
T PRK10148 6 YLSFAGNCADAIAYYQQTLGAELLYKISFGEMPKSAQDSEEGCPSGMQFPDTAIAHANVRIA----GSDIMMSDAI-P-S 79 (147)
T ss_pred EEEeCCCHHHHHHHHHHHhCCEEEEEEEcccCCccccccccCCCccccCcCCcEEEEEEEEC----CEEEEEECCC-C-C
Confidence 45564 89999999999999887644311 0122223333322 2233222211 1 1
Q ss_pred cCCCCCeeEEEEEeCCHHH---HHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEEEEEeccccc
Q 020803 253 YDKGNAYAQIAIGTDDVYK---TAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDNVDFL 317 (321)
Q Consensus 253 ~~~~~~~~hi~f~v~dl~~---~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~~~~ 317 (321)
........++++.++|.++ ++++| +.|+++..++.+.+++. ++..++||.|+.|.|...+..+
T Consensus 80 ~~~~~~~~~l~l~~~d~ee~~~~~~aL-a~gg~v~mpl~~~~wg~-~~g~v~D~fGi~W~l~~~~~~~ 145 (147)
T PRK10148 80 GKAHYSGFTLVLDTQDVEEGKRWFDNL-AANGKIEMAWQETFWAH-GFGKVTDKFGVPWMINVVKQQP 145 (147)
T ss_pred cCCCCCeEEEEEECCCHHHHHHHHHHh-hCCCEEEecchhcchhh-ccEEEECCCCCEEEEEecCCCC
Confidence 1111124578888888776 56666 58889999998888874 8899999999999998765443
No 176
>PF14506 CppA_N: CppA N-terminal; PDB: 3E0R_D.
Probab=98.32 E-value=1.4e-05 Score=59.93 Aligned_cols=113 Identities=22% Similarity=0.332 Sum_probs=63.5
Q ss_pred eEEEEEeCChhHHHHHHHHhcCCeeecccCCCCCceEEEEeccCCCCcceEEEeeeccCCC--ccCCCCCeeEEEEEeCC
Q 020803 191 CQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVT--DYDKGNAYAQIAIGTDD 268 (321)
Q Consensus 191 ~hi~l~v~D~e~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~--~~~~~~~~~hi~f~v~d 268 (321)
.+-+|.|.|-+..++||++.|||++..+.. .++.++... ....+.|-..++.. ......-+.++-+.|++
T Consensus 2 ~~PvlRVnnR~~ni~FY~~~LGfkll~EEn------a~a~lg~~~--~~erlvlEESP~~rtr~V~G~KKl~~ivIkv~~ 73 (125)
T PF14506_consen 2 IIPVLRVNNRDLNIDFYQKTLGFKLLSEEN------ALAILGDQQ--KEERLVLEESPSMRTRAVEGPKKLNRIVIKVPN 73 (125)
T ss_dssp EEEEEEESSHHHHHHHHTTTT--EEEEEET------TEEEEE-TT----EEEEEEE--TTT-B--SSS-SEEEEEEEESS
T ss_pred cCceEEEcCHHHhHHHHHhccCcEEeeccc------cEEEecCCC--CceEEEEecCCccccccccCcceeeEEEEEcCC
Confidence 467899999999999999999999987543 455566432 23444444333322 22333478899999998
Q ss_pred HHHHHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEEEEEeccc
Q 020803 269 VYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDNVD 315 (321)
Q Consensus 269 l~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~~ 315 (321)
..++. .|.++|.++.. -..+-.|+.+-..+|+|..|.+....+
T Consensus 74 ~~EIe-~LLar~~~~~~---l~kg~~gyAfe~vSPEgd~~llhaEdd 116 (125)
T PF14506_consen 74 PKEIE-ALLARGAQYDR---LYKGKNGYAFEAVSPEGDRFLLHAEDD 116 (125)
T ss_dssp HHHHH-HHHHC-S--SE---EEE-SSSEEEEEE-TT--EEEEE--S-
T ss_pred HHHHH-HHHhcccccce---eEEcCCceEEEEECCCCCEEEEEEcCC
Confidence 65544 34445555322 122333678889999999999987654
No 177
>COG3607 Predicted lactoylglutathione lyase [General function prediction only]
Probab=98.24 E-value=9.3e-06 Score=61.19 Aligned_cols=113 Identities=22% Similarity=0.267 Sum_probs=68.4
Q ss_pred eceEEEEEeCCh----hhhhhccCCEEEEEEeCCCCceEEEEeeeCCCCcceEEEEEee-c------CCCCcCCCCCceE
Q 020803 63 FPLIVVFPAGDG----RFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYN-Y------GVDKYDIGTGFGH 131 (321)
Q Consensus 63 ~i~Hv~l~V~D~----~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~-~------~~~~~~~~~g~~h 131 (321)
+.-.|+|.|+|+ +||+. |||+.-.....+. ....+-. + +.. ..-|... . ....... ..-.-
T Consensus 3 ~mIFvNLPVkDL~~S~~Fy~a-lGfk~Npq~sde~---a~~mi~~-~-ni~-vMLL~~~~fq~F~~~~i~dt~~-s~evl 74 (133)
T COG3607 3 QMIFVNLPVKDLEASKAFYTA-LGFKFNPQFSDED---AACMIIS-D-NIF-VMLLEEARFQTFTKRQIADTTK-SREVL 74 (133)
T ss_pred eEEEEecchhhHHHHHHHHHH-hCcccCCCccccc---ceeEEEe-c-cEE-EEEeccHHhhhhcccccccccC-CceEE
Confidence 356899999999 99976 9999865433221 1122211 1 111 1112111 0 0011111 12224
Q ss_pred EEEEeCC---HHHHHHHHHHcCCeeeeCCcccCCCCeEEEEEECCCCcEEEEEecCC
Q 020803 132 FGIAVDD---VAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGP 185 (321)
Q Consensus 132 l~f~v~d---l~~~~~~l~~~Gv~i~~~p~~~~~g~~~~~~~~DPdG~~iel~~~~~ 185 (321)
+|+.+.+ ++++.++..++|.++..++...+ .-...-|.|||||.||+..-.+
T Consensus 75 i~ls~~s~eevd~~v~ka~eaGGk~~~~~~d~g--fMYg~~fqDpDGh~wE~l~m~~ 129 (133)
T COG3607 75 ISLSAGSREEVDELVDKALEAGGKPANEPQDEG--FMYGRSFQDPDGHVWEFLWMDP 129 (133)
T ss_pred EEeccCcHHHHHHHHHHHHHcCCCCCCCccccc--cccceeeeCCCCCeEEEEEeCH
Confidence 6787764 88899999999999977766544 2334568999999999987543
No 178
>PLN02875 4-hydroxyphenylpyruvate dioxygenase
Probab=98.14 E-value=8.7e-05 Score=68.66 Aligned_cols=122 Identities=19% Similarity=0.222 Sum_probs=83.4
Q ss_pred ceEEEEEeCChhHHHHHHHHhcCCeeecccCCCCCc--eEEEEeccCCCCcceEEEeeeccCC-----------------
Q 020803 190 LCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYK--YTIAMMGYGPEDKNVVLELTYNYGV----------------- 250 (321)
Q Consensus 190 l~hi~l~v~D~e~a~~FY~~vLG~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~lel~~~~~~----------------- 250 (321)
++||.+.|.|..++..||...|||+.+.......+. .....++.+ ...+.+.....+
T Consensus 1 ~dhvef~v~da~~~~~~f~~~~GF~~~a~~~~~tg~~~~~s~~~r~g----~i~fv~~~~~~~~~~~~~~~~~~~~~~~~ 76 (398)
T PLN02875 1 FHHVEFWCGDATNTARRFSWGLGMPLVAKSDLTTGNTTYASYLLRSG----DLVFLFTAPYSPKIGAGDDDPASTAPHPS 76 (398)
T ss_pred CeEEEEEcCCHHHHHHHHHHhcCCCeEeecCCCCCCcceEEEEEEeC----CEEEEEeCCCCCccccccccccccccccc
Confidence 689999999999999999999999987654421111 222223311 233333322101
Q ss_pred --Cc------cCCCCCeeEEEEEeCCHHHHHHHHHHCCCeeecCCccCCC----CCceEEEEECCCCCEEEEEeccc
Q 020803 251 --TD------YDKGNAYAQIAIGTDDVYKTAEAIKLFGGKVTREPGPLPG----INTKITACLDPDGWKTVFVDNVD 315 (321)
Q Consensus 251 --~~------~~~~~~~~hi~f~v~dl~~~~~~l~~~G~~~~~~p~~~~~----~~~~~~~~~DPdG~~iel~~~~~ 315 (321)
.. ..+|++..-++|.|+|++++++++.++|++...+|..... +.-....+.-++|..+-|+++..
T Consensus 77 ~~~~~a~~~~~~HG~gV~dvaf~V~Da~~a~~~A~~~Ga~~~~~~~~~~d~~~~g~~~~~~I~~~G~~~h~lVdr~~ 153 (398)
T PLN02875 77 FSSDAARRFFAKHGLAVRAVGVLVEDAEEAFRTSVAHGARPVLEPTELGDEASGGKAVIAEVELYGDVVLRYVSYKG 153 (398)
T ss_pred cCcHHHHHHHHHcCCeeeEEEEEECCHHHHHHHHHHCCCeeccCCccccccccCceEEEEEEEccCCcEEEEEccCC
Confidence 00 1356788899999999999999999999998887765422 11245568888899999988654
No 179
>PF13468 Glyoxalase_3: Glyoxalase-like domain; PDB: 3P8A_B.
Probab=97.95 E-value=2e-05 Score=65.22 Aligned_cols=87 Identities=23% Similarity=0.292 Sum_probs=51.0
Q ss_pred ceEEEEEeCChhHHHHHHHHhcCCeeecccCCCC-C-ceEEEEeccCCCCcceEEEeeeccCCCcc------------CC
Q 020803 190 LCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPE-Y-KYTIAMMGYGPEDKNVVLELTYNYGVTDY------------DK 255 (321)
Q Consensus 190 l~hi~l~v~D~e~a~~FY~~vLG~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~lel~~~~~~~~~------------~~ 255 (321)
|+|+.+.|+|++++.++|++.|||.+......+. + .-.++.++ ...||+....+.... ..
T Consensus 1 lDH~v~~v~dl~~a~~~~~~~lGf~~~~gg~h~~~GT~N~li~f~------~~YlEli~i~~~~~~~~~~~~~~~~~~~~ 74 (175)
T PF13468_consen 1 LDHLVIAVRDLDAAVERFEQRLGFTVTPGGEHPGWGTANALIPFG------DGYLELIAIDPEAPAPDRGRWFGLDRLAG 74 (175)
T ss_dssp EEEEEEE-TTGGG----GGGS--S--EEEEE-TTT-EEEEEEE-S------SSEEEEEEES-HHHSTGGGT-TTTHHHHT
T ss_pred CCEEEEEcCCHHHHHHhhhhcceEeecCCCcCCCCccEEEEEeeC------CceEEEEEeCCcccccccccceechhhcC
Confidence 6999999999999999998889999987655443 2 23444554 237777763221110 13
Q ss_pred CCCeeEEEEEeCCHHHHHHHHHHCCCe
Q 020803 256 GNAYAQIAIGTDDVYKTAEAIKLFGGK 282 (321)
Q Consensus 256 ~~~~~hi~f~v~dl~~~~~~l~~~G~~ 282 (321)
+.++.++|+.++|+++..+++++.|+.
T Consensus 75 ~~g~~~~~l~t~d~~~~~~~l~~~G~~ 101 (175)
T PF13468_consen 75 GEGLYGWALRTDDIEAVAARLRAAGLD 101 (175)
T ss_dssp --EEEEEEEE-S-HHHHHHHHHTTT-E
T ss_pred CCCeEEEEEecCCHHHHHHHHHhcCCC
Confidence 568889999999999999999999986
No 180
>PRK01037 trmD tRNA (guanine-N(1)-)-methyltransferase/unknown domain fusion protein; Reviewed
Probab=97.89 E-value=8.1e-05 Score=66.72 Aligned_cols=103 Identities=16% Similarity=0.202 Sum_probs=66.8
Q ss_pred eeeceEEEEEeCCh----hhhhhccCCEEEEEEeCCCCceEEEEeeeCCCCcceEEEEEeecCCCCcCCCCCceEEEEEe
Q 020803 61 SFFPLIVVFPAGDG----RFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAV 136 (321)
Q Consensus 61 ~~~i~Hv~l~V~D~----~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hl~f~v 136 (321)
..+.-||+|.|+|+ +||+++||+.. ..++.. + ..++ . -+.+-+... + .....-.-+|+.+
T Consensus 245 ~~~~IfVNLpV~DL~rS~~FYt~LF~~n~-----Fsde~a--~--cm~d-t-I~vMllt~~-D----~~~~~evLl~Ls~ 308 (357)
T PRK01037 245 SPKTFSVVLEVQDLRRAKKFYSKMFGLEC-----WDGDKL--F--LLGK-T-SLYLQQTKA-E----KKNRGTTTLSLEL 308 (357)
T ss_pred CCceEEEEeeeCCHHHHHHHHHHHhCCCC-----CCCCcc--c--cccC-c-EEEEEecCC-C----CCCcceEEEEecc
Confidence 56788999999999 99999988873 222221 1 1121 1 122222222 1 1112223478988
Q ss_pred CC---HHHHHHHHHHcCCeeeeCCcccCCCCeEEEEEECCCCcEEEEEec
Q 020803 137 DD---VAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLER 183 (321)
Q Consensus 137 ~d---l~~~~~~l~~~Gv~i~~~p~~~~~g~~~~~~~~DPdG~~iel~~~ 183 (321)
++ +|++.++..++|.+...++..++. .--|.|||||.||++..
T Consensus 309 ~Sre~VD~lv~~A~aaGG~~~~~~~D~Gf----~rsf~D~DGH~WEi~~~ 354 (357)
T PRK01037 309 ECEHDFVRFLRRWEMLGGELGEQADGHFP----LRLVFDLDGHIWVVSCV 354 (357)
T ss_pred CCHHHHHHHHHHHHHcCCCCCCCcccccC----cceeECCCCCEEEEEEE
Confidence 85 888999999999977666555443 24589999999999864
No 181
>PRK10148 hypothetical protein; Provisional
Probab=97.87 E-value=0.0015 Score=52.29 Aligned_cols=105 Identities=16% Similarity=0.112 Sum_probs=67.1
Q ss_pred hhhhhccCCEEEEEEeC--------------------CCCceEEEEeeeCCCCcceEEEEEeecCCCCcCCCCCceEEEE
Q 020803 75 RFYTECLGMKLLRKRDI--------------------PEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGI 134 (321)
Q Consensus 75 ~FY~~vLG~~~~~~~~~--------------------~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hl~f 134 (321)
+||+++||-++...... +++....+.|.+++ ..+-+....... ...++ -.++++
T Consensus 18 ~FY~~~Fgae~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Ha~l~i~g----~~lm~sD~~~~~-~~~~~-~~~l~l 91 (147)
T PRK10148 18 AYYQQTLGAELLYKISFGEMPKSAQDSEEGCPSGMQFPDTAIAHANVRIAG----SDIMMSDAIPSG-KAHYS-GFTLVL 91 (147)
T ss_pred HHHHHHhCCEEEEEEEcccCCccccccccCCCccccCcCCcEEEEEEEECC----EEEEEECCCCCc-CCCCC-eEEEEE
Confidence 99999999998755320 12334455566542 223332211111 11222 336788
Q ss_pred EeCCHHH---HHHHHHHcCCeeeeCCcccCCCCeEEEEEECCCCcEEEEEecCCCC
Q 020803 135 AVDDVAK---TVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGPTP 187 (321)
Q Consensus 135 ~v~dl~~---~~~~l~~~Gv~i~~~p~~~~~g~~~~~~~~DPdG~~iel~~~~~~~ 187 (321)
.++|.++ ++++| +.|.++..++..... +.++..++||.|+.|.|......|
T Consensus 92 ~~~d~ee~~~~~~aL-a~gg~v~mpl~~~~w-g~~~g~v~D~fGi~W~l~~~~~~~ 145 (147)
T PRK10148 92 DTQDVEEGKRWFDNL-AANGKIEMAWQETFW-AHGFGKVTDKFGVPWMINVVKQQP 145 (147)
T ss_pred ECCCHHHHHHHHHHh-hCCCEEEecchhcch-hhccEEEECCCCCEEEEEecCCCC
Confidence 8888766 66766 689999888877766 456789999999999998765544
No 182
>PF14696 Glyoxalase_5: Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal ; PDB: 1CJX_A 2R5V_A.
Probab=97.85 E-value=0.0002 Score=56.43 Aligned_cols=118 Identities=21% Similarity=0.266 Sum_probs=76.3
Q ss_pred CCceEEEEEeCChhHHHHHHHHhcCCeeecccCCCCCceEEEEeccCCCCcceEEEeeeccCCCc----cCCCCCeeEEE
Q 020803 188 EPLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTD----YDKGNAYAQIA 263 (321)
Q Consensus 188 ~~l~hi~l~v~D~e~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~----~~~~~~~~hi~ 263 (321)
..+++|.+.++|.+++..++ ..|||+.+.+.... ...++.-+ ...+.+...+.... ..+|++..-++
T Consensus 8 ~G~dFvEFa~~~~~~l~~~~-~~lGF~~~a~hrsk--~v~l~rQG------~I~~vln~ep~s~a~~~~~~HG~sv~aia 78 (139)
T PF14696_consen 8 DGFDFVEFAVPDAQALAQLF-TALGFQPVARHRSK--DVTLYRQG------DINFVLNSEPDSFAAEFAAQHGPSVCAIA 78 (139)
T ss_dssp EEEEEEEEE-SSTTSCHHHH-CCCCEEEECCECCC--SEEEEEET------TEEEEEEEESTSCHHHHHHHHSSEEEEEE
T ss_pred CCeEEEEEecCCHHHHHHHH-HHhCcceEEecCCc--ceEEEEeC------CEEEEEeCCCcchHHHHHHhcCCEEEEEE
Confidence 46899999999988888888 56999998765432 23333222 34444443222111 13578899999
Q ss_pred EEeCCHHHHHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEEEEEecccc
Q 020803 264 IGTDDVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDNVDF 316 (321)
Q Consensus 264 f~v~dl~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~~~ 316 (321)
|.|+|..++++++.+.|++...+|.. ++ .-...-++-+.|.++-|+++.+.
T Consensus 79 frV~Da~~A~~rA~~~GA~~~~~~~~-~~-e~~~paI~g~G~sl~yfVdr~~~ 129 (139)
T PF14696_consen 79 FRVDDAAAAYERAVALGAEPVQEPTG-PG-ELNIPAIRGIGGSLHYFVDRYGD 129 (139)
T ss_dssp EEES-HHHHHHHHHHTT--EEEEEEE-TT--BEEEEEE-CCC-EEEEEE--SS
T ss_pred EEeCCHHHHHHHHHHcCCcCcccCCC-CC-cEeeeeEEccCCCEEEEEecCCC
Confidence 99999999999999999998876532 22 23667899999999999998643
No 183
>COG3185 4-hydroxyphenylpyruvate dioxygenase and related hemolysins [Amino acid transport and metabolism / General function prediction only]
Probab=97.75 E-value=6e-05 Score=67.01 Aligned_cols=94 Identities=21% Similarity=0.293 Sum_probs=67.8
Q ss_pred eeeceEEEEEeCCh------hhhhhccCCEEEEEEeCCCCc--e-EEEEeeeCCCCcceEEEEEeecCCCC-------cC
Q 020803 61 SFFPLIVVFPAGDG------RFYTECLGMKLLRKRDIPEEK--Y-TNAFLGYGPEDSHFVIELTYNYGVDK-------YD 124 (321)
Q Consensus 61 ~~~i~Hv~l~V~D~------~FY~~vLG~~~~~~~~~~~~~--~-~~~~l~~~~~~~~~~l~l~~~~~~~~-------~~ 124 (321)
..+|+|++..|.-- .||+++|||+.......++.. . .-++.+ + .....+.|....+..+ .-
T Consensus 165 ~~~IDHl~~nv~~~~md~w~~FY~~if~~~~~~~fdi~~p~tgl~Sram~S--p-~G~vrlplN~s~~~~sqi~efl~~y 241 (363)
T COG3185 165 LTAIDHLTHNVKAGQMDTWVLFYESLFGFREIQYFDIPGPITGLRSRAMVS--P-CGKVRLPLNESADDKSQIGEFLREY 241 (363)
T ss_pred ceeechhhhhcchhhHHHHHHHHHHHhCccceeeEeccCCcccEEEeeEec--C-CCcEEeecccCCCchhHHHHHHHHh
Confidence 35899999999844 999999999998876665532 1 222222 2 1235566655433322 24
Q ss_pred CCCCceEEEEEeCCHHHHHHHHHHcCCeeeeCC
Q 020803 125 IGTGFGHFGIAVDDVAKTVELIKAKGGKVTREP 157 (321)
Q Consensus 125 ~~~g~~hl~f~v~dl~~~~~~l~~~Gv~i~~~p 157 (321)
.|.|+.||+|.++|+-++.++++++|+++...|
T Consensus 242 ~G~GIQHIA~~T~dI~~tv~~lr~rG~~fl~ip 274 (363)
T COG3185 242 RGEGIQHIAFGTDDIYATVAALRERGVKFLPIP 274 (363)
T ss_pred CCCcceEEEecccHHHHHHHHHHHcCCccCCCc
Confidence 678999999999999999999999999987654
No 184
>PF14696 Glyoxalase_5: Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal ; PDB: 1CJX_A 2R5V_A.
Probab=97.67 E-value=0.00055 Score=53.92 Aligned_cols=115 Identities=20% Similarity=0.174 Sum_probs=73.6
Q ss_pred eeeceEEEEEeCCh----hhhhhccCCEEEEEEeCCCCceEEEEeeeCCCCcceEEEEEeecCCCC----cCCCCCceEE
Q 020803 61 SFFPLIVVFPAGDG----RFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDK----YDIGTGFGHF 132 (321)
Q Consensus 61 ~~~i~Hv~l~V~D~----~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~----~~~~~g~~hl 132 (321)
...++||.+.++|. .++ ..|||+.+.+.... .+..++-| .. .+-+........ ..+|+++.-+
T Consensus 7 ~~G~dFvEFa~~~~~~l~~~~-~~lGF~~~a~hrsk----~v~l~rQG--~I--~~vln~ep~s~a~~~~~~HG~sv~ai 77 (139)
T PF14696_consen 7 LDGFDFVEFAVPDAQALAQLF-TALGFQPVARHRSK----DVTLYRQG--DI--NFVLNSEPDSFAAEFAAQHGPSVCAI 77 (139)
T ss_dssp EEEEEEEEEE-SSTTSCHHHH-CCCCEEEECCECCC----SEEEEEET--TE--EEEEEEESTSCHHHHHHHHSSEEEEE
T ss_pred CCCeEEEEEecCCHHHHHHHH-HHhCcceEEecCCc----ceEEEEeC--CE--EEEEeCCCcchHHHHHHhcCCEEEEE
Confidence 46799999999999 555 57999998764322 12333432 22 333333222111 1468899999
Q ss_pred EEEeCCHHHHHHHHHHcCCeeeeCCcccCCCCeEEEEEECCCCcEEEEEecCCC
Q 020803 133 GIAVDDVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGPT 186 (321)
Q Consensus 133 ~f~v~dl~~~~~~l~~~Gv~i~~~p~~~~~g~~~~~~~~DPdG~~iel~~~~~~ 186 (321)
+|.|+|.++++++..++|.+...+|.. .+.-.+.-++.+.|.++-|+++...
T Consensus 78 afrV~Da~~A~~rA~~~GA~~~~~~~~--~~e~~~paI~g~G~sl~yfVdr~~~ 129 (139)
T PF14696_consen 78 AFRVDDAAAAYERAVALGAEPVQEPTG--PGELNIPAIRGIGGSLHYFVDRYGD 129 (139)
T ss_dssp EEEES-HHHHHHHHHHTT--EEEEEEE--TT-BEEEEEE-CCC-EEEEEE--SS
T ss_pred EEEeCCHHHHHHHHHHcCCcCcccCCC--CCcEeeeeEEccCCCEEEEEecCCC
Confidence 999999999999999999998776532 2355677788999999999987543
No 185
>PF14507 CppA_C: CppA C-terminal; PDB: 3E0R_D.
Probab=96.39 E-value=0.011 Score=43.50 Aligned_cols=92 Identities=16% Similarity=0.196 Sum_probs=44.1
Q ss_pred ceEEEEEeCChhHHHHHHHHhcCCeeecccCCCCCceEEEEeccCCCCcceEEEeeeccCCCccCCCCCeeEEEEEeC--
Q 020803 190 LCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGTD-- 267 (321)
Q Consensus 190 l~hi~l~v~D~e~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~~~hi~f~v~-- 267 (321)
+..+.|+|+| +++..||+++||-... ..+.+.... +..+.+ +....-++..+-|.|+
T Consensus 6 ~e~i~LNV~d-~~~~~fy~~~f~~~~~---------~~l~f~ea~----G~DL~~-------~~~~twDLe~Lkf~V~~~ 64 (101)
T PF14507_consen 6 FESIELNVPD-AKSQSFYQSIFGGQLP---------FFLTFQEAQ----GPDLTI-------ENNETWDLEMLKFQVPKD 64 (101)
T ss_dssp E-EEEEEE-T--T---S--H---HHHT---------TTEEEEE-------CCGSS--------TTSBSSEEEEEEEES-S
T ss_pred EEEEEEeCCC-hhHHHHHHhccccCCC---------ceEEEeecc----CCcccc-------CCCcEEeeEEEEEEecCc
Confidence 5678999999 8899999998873221 112222111 000000 1122346778899998
Q ss_pred -CHHHHHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEEEE
Q 020803 268 -DVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVF 310 (321)
Q Consensus 268 -dl~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel 310 (321)
|+.++.+++.+.++ ..+ -. .+.+.+.||+|..|.|
T Consensus 65 ~Dl~~L~~~le~~~~--fid-----Kk-~k~l~~~Dps~IElWF 100 (101)
T PF14507_consen 65 FDLAALKSHLEEQEF--FID-----KK-EKFLVTSDPSQIELWF 100 (101)
T ss_dssp --HHHHHHHTTTS-E--E-------TT--SEEEEE-TTS-EEEE
T ss_pred ccHHHHHHHhcccce--Eec-----CC-ceEEEEECCcceEEEe
Confidence 68888888887443 222 11 4789999999998876
No 186
>PF06983 3-dmu-9_3-mt: 3-demethylubiquinone-9 3-methyltransferase; PDB: 1U7I_A 1TSJ_A 1U69_D 3L20_B 3OMS_A.
Probab=96.30 E-value=0.11 Score=39.79 Aligned_cols=96 Identities=22% Similarity=0.276 Sum_probs=52.3
Q ss_pred CChhHHHHHHHHhcCCee-ecccCCC------CCceEEEEeccCCCCcceEEEeeeccCCCccCCCCCeeEEEEEeCC--
Q 020803 198 GDLDRSINFYEQAFGMEL-LRKRDNP------EYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGTDD-- 268 (321)
Q Consensus 198 ~D~e~a~~FY~~vLG~~~-~~~~~~~------~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~~~hi~f~v~d-- 268 (321)
.+-++|.+||.++||-.. ......+ .+......+..+ +..+-..... .....++ ...+++.++|
T Consensus 11 g~a~eA~~fY~~vf~~~~i~~~~~~~~~~~~~~~~v~ha~l~i~----g~~lm~~D~~--~~~~~~~-~~sl~i~~~~~e 83 (116)
T PF06983_consen 11 GNAEEALEFYKEVFGGSEIMTFGDYPDDEPEWKDKVMHAELTIG----GQKLMASDGG--PDFPFGN-NISLCIECDDEE 83 (116)
T ss_dssp S-HHHHHHHHHHHSTTEEEEEEEE-TTTCTTHTTSEEEEEEEET----TEEEEEEEES--TS----T-TEEEEEEESSHH
T ss_pred CCHHHHHHHHHHHcCCCEEEEEeECCCCCCCCCCcEEEEEEEEC----CeEEEEECCC--CCCCCCC-cEEEEEEcCCHH
Confidence 589999999999999432 2222211 112222223321 2333222221 1222333 3678888886
Q ss_pred -HHHHHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEEEEE
Q 020803 269 -VYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFV 311 (321)
Q Consensus 269 -l~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~ 311 (321)
+++++++|.+.|- ++ +....++|..|..|.|+
T Consensus 84 e~~~~f~~Ls~gG~----------~~-~~~G~v~DkFGv~Wqiv 116 (116)
T PF06983_consen 84 EIDRIFDKLSEGGQ----------WF-SRYGWVTDKFGVSWQIV 116 (116)
T ss_dssp HHHHHHHHHHTTTE----------TC-CEEEEEE-TTS-EEEEE
T ss_pred HHHHHHHHHHcCCC----------cc-ceeEEEEeCCCCEEEeC
Confidence 5567778887764 22 37889999999999985
No 187
>PF15067 FAM124: FAM124 family
Probab=95.38 E-value=0.36 Score=40.99 Aligned_cols=125 Identities=12% Similarity=0.112 Sum_probs=73.0
Q ss_pred EEEECCCCcEEEEEecCCCCCCceEEEEEeC--ChhHHHHHHHHhcCCeeecccCCCCCceEEEEeccCCCCcceEEEee
Q 020803 168 AFIEDPDGYKFELLERGPTPEPLCQVMLRVG--DLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELT 245 (321)
Q Consensus 168 ~~~~DPdG~~iel~~~~~~~~~l~hi~l~v~--D~e~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~ 245 (321)
+|-.+|.--.|.+-+. --..-+-.++|.|+ |.+.+++||+-+|+-+...... ++-.+.+-.. .+..+.+.
T Consensus 108 fysl~~~~PlWavr~V-H~G~EilRftly~~~~N~~d~vr~Yelil~~~~~~~k~----~FC~F~lys~---~~~~iQls 179 (236)
T PF15067_consen 108 FYSLDPGMPLWAVRQV-HYGKEILRFTLYCSFDNYEDMVRFYELILQREPTQQKE----DFCFFTLYSQ---PGLDIQLS 179 (236)
T ss_pred ceecCCCCceeEEeee-eccccEEEEEEEecCCCHHHHHHHHHHHhccCcceeeC----CcEEEEEecC---CCeEEEEE
Confidence 3444554444444432 22456788899999 9999999999999988754332 2333333321 14555555
Q ss_pred eccCCCc-cCCCCCeeEEEEEeCCHHHHHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEEEE
Q 020803 246 YNYGVTD-YDKGNAYAQIAIGTDDVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVF 310 (321)
Q Consensus 246 ~~~~~~~-~~~~~~~~hi~f~v~dl~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel 310 (321)
...-+.. ...+....-+.|.|.|+-+++-.|=.-- .|-+. ..--..|||||.|-|
T Consensus 180 LK~lp~~~~p~p~esavLqF~V~~igqLvpLLPnpc---------~PIS~-~rWqT~D~DGNkILL 235 (236)
T PF15067_consen 180 LKQLPPGMSPEPTESAVLQFRVEDIGQLVPLLPNPC---------SPISE-TRWQTEDYDGNKILL 235 (236)
T ss_pred eccCCCCCCcccccceEEEEEecchhhhcccCCCCc---------ccccC-CcceeeCCCCCEecc
Confidence 4222111 1222344679999999988765443211 12221 235679999999854
No 188
>PF06983 3-dmu-9_3-mt: 3-demethylubiquinone-9 3-methyltransferase; PDB: 1U7I_A 1TSJ_A 1U69_D 3L20_B 3OMS_A.
Probab=95.26 E-value=0.51 Score=36.03 Aligned_cols=89 Identities=19% Similarity=0.348 Sum_probs=49.1
Q ss_pred hhhhhccCCE-EEEEEeCCC------CceEEEEeeeCCCCcceEEEEEeecCCCCcCCCCCceEEEEEeCC---HHHHHH
Q 020803 75 RFYTECLGMK-LLRKRDIPE------EKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVDD---VAKTVE 144 (321)
Q Consensus 75 ~FY~~vLG~~-~~~~~~~~~------~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hl~f~v~d---l~~~~~ 144 (321)
+||.++||-. +......++ +....+.+..+. ..+-..... +.+..++++ .+++.++| ++++++
T Consensus 18 ~fY~~vf~~~~i~~~~~~~~~~~~~~~~v~ha~l~i~g----~~lm~~D~~--~~~~~~~~~-sl~i~~~~~ee~~~~f~ 90 (116)
T PF06983_consen 18 EFYKEVFGGSEIMTFGDYPDDEPEWKDKVMHAELTIGG----QKLMASDGG--PDFPFGNNI-SLCIECDDEEEIDRIFD 90 (116)
T ss_dssp HHHHHHSTTEEEEEEEE-TTTCTTHTTSEEEEEEEETT----EEEEEEEES--TS----TTE-EEEEEESSHHHHHHHHH
T ss_pred HHHHHHcCCCEEEEEeECCCCCCCCCCcEEEEEEEECC----eEEEEECCC--CCCCCCCcE-EEEEEcCCHHHHHHHHH
Confidence 9999999853 333222221 233444555432 222222221 333344454 68888887 555788
Q ss_pred HHHHcCCeeeeCCcccCCCCeEEEEEECCCCcEEEEE
Q 020803 145 LIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELL 181 (321)
Q Consensus 145 ~l~~~Gv~i~~~p~~~~~g~~~~~~~~DPdG~~iel~ 181 (321)
+|.+.|- +. . .+..++|..|..|.|+
T Consensus 91 ~Ls~gG~---------~~-~-~~G~v~DkFGv~Wqiv 116 (116)
T PF06983_consen 91 KLSEGGQ---------WF-S-RYGWVTDKFGVSWQIV 116 (116)
T ss_dssp HHHTTTE---------TC-C-EEEEEE-TTS-EEEEE
T ss_pred HHHcCCC---------cc-c-eeEEEEeCCCCEEEeC
Confidence 8877664 22 3 7789999999999885
No 189
>PF15067 FAM124: FAM124 family
Probab=89.94 E-value=2.6 Score=35.92 Aligned_cols=101 Identities=22% Similarity=0.234 Sum_probs=55.8
Q ss_pred eceEEEEEeC--Ch----hhhhhccCCEEEEEEeCCCCceEEEEeeeCCCCcceEEEEEeecC-CCCcCCCCCceEEEEE
Q 020803 63 FPLIVVFPAG--DG----RFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYG-VDKYDIGTGFGHFGIA 135 (321)
Q Consensus 63 ~i~Hv~l~V~--D~----~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~-~~~~~~~~g~~hl~f~ 135 (321)
-+--++|.|+ |. +||+-+|+-+...... + +- .|.-+. ..++.+.++-..- ..-......-.-+.|.
T Consensus 128 EilRftly~~~~N~~d~vr~Yelil~~~~~~~k~--~--FC-~F~lys--~~~~~iQlsLK~lp~~~~p~p~esavLqF~ 200 (236)
T PF15067_consen 128 EILRFTLYCSFDNYEDMVRFYELILQREPTQQKE--D--FC-FFTLYS--QPGLDIQLSLKQLPPGMSPEPTESAVLQFR 200 (236)
T ss_pred cEEEEEEEecCCCHHHHHHHHHHHhccCcceeeC--C--cE-EEEEec--CCCeEEEEEeccCCCCCCcccccceEEEEE
Confidence 6677899999 66 9999999998865532 1 21 222222 2234444443221 1111111122358999
Q ss_pred eCCHHHHHHHHHHcCCeeeeCCcccCCCCeEEEEEECCCCcEEEE
Q 020803 136 VDDVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFEL 180 (321)
Q Consensus 136 v~dl~~~~~~l~~~Gv~i~~~p~~~~~g~~~~~~~~DPdG~~iel 180 (321)
|.|+.++..-|-. .+. ++ +.++ --..|||||.|-|
T Consensus 201 V~~igqLvpLLPn-pc~------PI--S~~r-WqT~D~DGNkILL 235 (236)
T PF15067_consen 201 VEDIGQLVPLLPN-PCS------PI--SETR-WQTEDYDGNKILL 235 (236)
T ss_pred ecchhhhcccCCC-Ccc------cc--cCCc-ceeeCCCCCEecc
Confidence 9999887654411 111 11 1222 4579999999854
No 190
>PF14507 CppA_C: CppA C-terminal; PDB: 3E0R_D.
Probab=85.34 E-value=3.5 Score=30.49 Aligned_cols=89 Identities=15% Similarity=0.177 Sum_probs=39.4
Q ss_pred eceEEEEEeCCh---hhhhhccCCEEEEEEeCCCCceEEEEeeeCCCCcceEEEEEeecCCCCcCCCCCceEEEEEeC--
Q 020803 63 FPLIVVFPAGDG---RFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVD-- 137 (321)
Q Consensus 63 ~i~Hv~l~V~D~---~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hl~f~v~-- 137 (321)
.+.-|.|+|+|. +||+++||-.+ + ..+.+.... +....+ +....=++.-+-|.|+
T Consensus 5 ~~e~i~LNV~d~~~~~fy~~~f~~~~------~---~~l~f~ea~--G~DL~~---------~~~~twDLe~Lkf~V~~~ 64 (101)
T PF14507_consen 5 EFESIELNVPDAKSQSFYQSIFGGQL------P---FFLTFQEAQ--GPDLTI---------ENNETWDLEMLKFQVPKD 64 (101)
T ss_dssp EE-EEEEEE-T-T---S--H---HHH------T---TTEEEEE-----CCGSS----------TTSBSSEEEEEEEES-S
T ss_pred EEEEEEEeCCChhHHHHHHhccccCC------C---ceEEEeecc--CCcccc---------CCCcEEeeEEEEEEecCc
Confidence 467789999996 99999886221 0 111221110 000000 0011115556778898
Q ss_pred -CHHHHHHHHHHcCCeeeeCCcccCCCCeEEEEEECCCCcEEE
Q 020803 138 -DVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFE 179 (321)
Q Consensus 138 -dl~~~~~~l~~~Gv~i~~~p~~~~~g~~~~~~~~DPdG~~ie 179 (321)
|+.++.+++.+.++-+ + ...+++.+.||+|.-+-
T Consensus 65 ~Dl~~L~~~le~~~~fi--d------Kk~k~l~~~Dps~IElW 99 (101)
T PF14507_consen 65 FDLAALKSHLEEQEFFI--D------KKEKFLVTSDPSQIELW 99 (101)
T ss_dssp --HHHHHHHTTTS-EE----------TT-SEEEEE-TTS-EEE
T ss_pred ccHHHHHHHhcccceEe--c------CCceEEEEECCcceEEE
Confidence 5888888888744322 1 14467888999998654
No 191
>COG3865 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=74.31 E-value=41 Score=26.58 Aligned_cols=41 Identities=20% Similarity=0.147 Sum_probs=29.6
Q ss_pred EEEEeCC---HHHHHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEEEEEec
Q 020803 262 IAIGTDD---VYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDN 313 (321)
Q Consensus 262 i~f~v~d---l~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~~ 313 (321)
+-+.++| +|.+..+|...|.+. ....+++|-.|..|.|+-+
T Consensus 81 ~~v~~~~q~E~Drlwnal~~~g~e~-----------~~cgW~kDKfGVSWQi~p~ 124 (151)
T COG3865 81 FQVACDDQEEIDRLWNALSDNGGEA-----------EACGWLKDKFGVSWQIVPR 124 (151)
T ss_pred EEEEcCCHHHHHHHHHHHhccCcch-----------hcceeEecccCcEEEEcHH
Confidence 4444554 777888888887621 3567999999999999743
No 192
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=68.27 E-value=20 Score=25.20 Aligned_cols=45 Identities=20% Similarity=0.232 Sum_probs=33.9
Q ss_pred CHHHHHHHHHHcCCeeeeCCcccCCCCeEEEEEECCCCcEEEEEecC
Q 020803 138 DVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERG 184 (321)
Q Consensus 138 dl~~~~~~l~~~Gv~i~~~p~~~~~g~~~~~~~~DPdG~~iel~~~~ 184 (321)
+.+++.+++++.|.++..- ....++.+-+...|.+|+.+|+.-..
T Consensus 30 ~~~~~~~~l~~~G~~v~~v--e~~~~g~yev~~~~~dG~~~ev~vD~ 74 (83)
T PF13670_consen 30 SIEQAVAKLEAQGYQVREV--EFDDDGCYEVEARDKDGKKVEVYVDP 74 (83)
T ss_pred CHHHHHHHHHhcCCceEEE--EEcCCCEEEEEEEECCCCEEEEEEcC
Confidence 6889999999999976543 22223456678899999999998553
No 193
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=66.40 E-value=17 Score=25.57 Aligned_cols=45 Identities=13% Similarity=-0.014 Sum_probs=33.1
Q ss_pred CHHHHHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEEEEEecc
Q 020803 268 DVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDNV 314 (321)
Q Consensus 268 dl~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~ 314 (321)
..+++.+.+++.|.++.. ..-...+ .+.+...|.||+.+|+.=.+
T Consensus 30 ~~~~~~~~l~~~G~~v~~-ve~~~~g-~yev~~~~~dG~~~ev~vD~ 74 (83)
T PF13670_consen 30 SIEQAVAKLEAQGYQVRE-VEFDDDG-CYEVEARDKDGKKVEVYVDP 74 (83)
T ss_pred CHHHHHHHHHhcCCceEE-EEEcCCC-EEEEEEEECCCCEEEEEEcC
Confidence 689999999999996543 2221222 47788999999999997544
No 194
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=65.78 E-value=29 Score=26.45 Aligned_cols=109 Identities=17% Similarity=0.228 Sum_probs=63.9
Q ss_pred HHHHHHHHHHcCCeeeeCCcccCCCCeEEEEEECCCCcEEEEEecCCCCCCceEEEEEeCChhHHHHHHHHhcCCeeecc
Q 020803 139 VAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGPTPEPLCQVMLRVGDLDRSINFYEQAFGMELLRK 218 (321)
Q Consensus 139 l~~~~~~l~~~Gv~i~~~p~~~~~g~~~~~~~~DPdG~~iel~~~~~~~~~l~hi~l~v~D~e~a~~FY~~vLG~~~~~~ 218 (321)
+..+.+.|+++|+.+.. +-+.| ...++-+.+.|++.+.|.+-.++ -||.+...
T Consensus 17 L~~~~~~L~eagINiRA------------~tiAd--------------t~dFGIiRmvV~~~d~A~~~Lee-~gF~Vr~~ 69 (142)
T COG4747 17 LASVANKLKEAGINIRA------------FTIAD--------------TGDFGIIRMVVDRPDEAHSVLEE-AGFTVRET 69 (142)
T ss_pred HHHHHHHHHHcCCceEE------------EEecc--------------ccCcceEEEEcCChHHHHHHHHH-CCcEEEee
Confidence 78889999999987631 11222 23456667888899999888877 78877432
Q ss_pred cCCCCCceEEEEeccCCC----------CcceEEEeeeccCCCccCCCCCeeEEEEEeCCHHHHHHHHHHCCCeeec
Q 020803 219 RDNPEYKYTIAMMGYGPE----------DKNVVLELTYNYGVTDYDKGNAYAQIAIGTDDVYKTAEAIKLFGGKVTR 285 (321)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~----------~~~~~lel~~~~~~~~~~~~~~~~hi~f~v~dl~~~~~~l~~~G~~~~~ 285 (321)
.. ..+-+...+. +....++..+. +.....-.-+-++|+|+|++...|+++|+.+..
T Consensus 70 dV------laVEmeD~PG~l~~I~~vl~d~diNldYiYA-----Fv~ek~KAlli~r~ed~d~~~~aLed~gi~~~~ 135 (142)
T COG4747 70 DV------LAVEMEDVPGGLSRIAEVLGDADINLDYIYA-----FVTEKQKALLIVRVEDIDRAIKALEDAGIKLIG 135 (142)
T ss_pred eE------EEEEecCCCCcHHHHHHHHhhcCcCceeeee-----eeecCceEEEEEEhhHHHHHHHHHHHcCCeecC
Confidence 11 1111111100 00111111110 001113346788899999999999999998764
No 195
>PF06185 YecM: YecM protein; InterPro: IPR010393 This family consists of several bacterial YecM proteins of unknown function.; PDB: 1K4N_A.
Probab=53.83 E-value=88 Score=25.97 Aligned_cols=78 Identities=10% Similarity=0.037 Sum_probs=38.7
Q ss_pred CCceEEEEEeCChhHHHHHHHHhcCCeeecccCC-CCCceEEEEeccC---CCCcceEEEeeeccCCCccCCCCCeeEEE
Q 020803 188 EPLCQVMLRVGDLDRSINFYEQAFGMELLRKRDN-PEYKYTIAMMGYG---PEDKNVVLELTYNYGVTDYDKGNAYAQIA 263 (321)
Q Consensus 188 ~~l~hi~l~v~D~e~a~~FY~~vLG~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~lel~~~~~~~~~~~~~~~~hi~ 263 (321)
-.+|||+++|.+.+.|.+|-+..+..-..-.... .+-...++.+.-+ .+..-..+||.++.+ ...+..|.-|+.
T Consensus 33 ~~~DHialRvn~~~~A~~~~~~l~~~G~llSen~INGRPI~l~~L~qPL~~~~~~I~~vELP~P~~--K~Yp~eGWEHIE 110 (185)
T PF06185_consen 33 YEIDHIALRVNSNETAERWKQALLQCGELLSENMINGRPICLFKLNQPLQFGGWSIDCVELPYPKD--KRYPQEGWEHIE 110 (185)
T ss_dssp -EEEEEEEE-S-HHHHHHHHHHHTTTEEEEEEEEETTEEEEEEEEEEEEEETTEEEEEEEEE---S--S--SS-EEEEEE
T ss_pred cCCcEEEEecCCHHHHHHHHHHHHHhChhhhhceeCCeeEEEEEcCCchhcCCeeEEEEEeCCCCC--CCCCCCCceEEE
Confidence 3589999999999999999998876543322211 1111222222211 111234456665333 122335888999
Q ss_pred EEeC
Q 020803 264 IGTD 267 (321)
Q Consensus 264 f~v~ 267 (321)
|.++
T Consensus 111 ~Vip 114 (185)
T PF06185_consen 111 FVIP 114 (185)
T ss_dssp EE--
T ss_pred EEec
Confidence 9986
No 196
>PF02208 Sorb: Sorbin homologous domain; InterPro: IPR003127 Sorbin is an active peptide present in the digestive tract, where it has pro-absorptive and anti-secretory effects in different parts of the intestine, including the ability to decrease VIP (vasoactive intestinal peptide) and cholera toxin-induced secretion. It is expressed in some intestinal and pancreatic endocrine tumours in humans []. Sorbin-homology domains are found in adaptor proteins such as vinexin, CAP/ponsin and argBP2, which regulate various cellular functions, including cell adhesion, cytoskeletal organisation, and growth factor signalling []. In addition to the sorbin domain, these proteins contain three SH3 (src homology 3) domains. The sorbin homology domain mediates the interaction of vinexin and CAP with flotillin, which is crucial for the localisation of SH3-binding proteins to the lipid raft, a region of the plasma membrane rich in cholesterol and sphingolipids that acts to concentrate certain signalling molecules. The sorbin homology domain of adaptor proteins may mediate interactions with the lipid raft that are crucial to intracellular communication [].
Probab=52.01 E-value=5.9 Score=24.37 Aligned_cols=25 Identities=20% Similarity=0.513 Sum_probs=20.5
Q ss_pred CCceEEEEEeCChhHHHHHHHHhcC
Q 020803 188 EPLCQVMLRVGDLDRSINFYEQAFG 212 (321)
Q Consensus 188 ~~l~hi~l~v~D~e~a~~FY~~vLG 212 (321)
+.++..++.+++++++.+||+..|-
T Consensus 10 gp~De~giP~~~vd~~kDWYktMFk 34 (47)
T PF02208_consen 10 GPVDESGIPLSNVDRPKDWYKTMFK 34 (47)
T ss_pred CccccCCCccccccchhHHHHHHHH
Confidence 4567777888999999999998663
No 197
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=49.59 E-value=38 Score=21.89 Aligned_cols=26 Identities=19% Similarity=0.461 Sum_probs=22.4
Q ss_pred CceEEEEEeCCHHHHHHHHHHcCCee
Q 020803 128 GFGHFGIAVDDVAKTVELIKAKGGKV 153 (321)
Q Consensus 128 g~~hl~f~v~dl~~~~~~l~~~Gv~i 153 (321)
+...+.|.+++.+.+.+.|+++|+++
T Consensus 39 ~~~~v~~~ve~~~~~~~~L~~~G~~v 64 (65)
T cd04882 39 GKALLIFRTEDIEKAIEVLQERGVEL 64 (65)
T ss_pred CeEEEEEEeCCHHHHHHHHHHCCceE
Confidence 44568899999999999999999875
No 198
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=49.09 E-value=54 Score=22.58 Aligned_cols=40 Identities=13% Similarity=0.008 Sum_probs=28.6
Q ss_pred HHHHHHHHHHCCCeeecCCccCCCC-CceEEEEECCCCCEE
Q 020803 269 VYKTAEAIKLFGGKVTREPGPLPGI-NTKITACLDPDGWKT 308 (321)
Q Consensus 269 l~~~~~~l~~~G~~~~~~p~~~~~~-~~~~~~~~DPdG~~i 308 (321)
+-++.+.+.++|+.+...-....+. .--.||+.|++|+.+
T Consensus 15 L~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~~g~kl 55 (72)
T cd04895 15 LLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLGNKL 55 (72)
T ss_pred HHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECCCCCCC
Confidence 6778889999999986553222222 125789999999876
No 199
>PF07063 DUF1338: Domain of unknown function (DUF1338); InterPro: IPR009770 This domain is found in a variety of bacterial and fungal hypothetical proteins of unknown function. The structure of this domain has been solved by structural genomics. The structure implies a zinc-binding function, so it is a putative metal hydrolase (information derived from TOPSAN for PDB:3iuz).; PDB: 3LHO_A 3IUZ_A 2RJB_C.
Probab=48.58 E-value=38 Score=30.51 Aligned_cols=30 Identities=23% Similarity=0.333 Sum_probs=22.8
Q ss_pred CCCCceEEEEEe------CCHHHHHHHHHHcCCeee
Q 020803 125 IGTGFGHFGIAV------DDVAKTVELIKAKGGKVT 154 (321)
Q Consensus 125 ~~~g~~hl~f~v------~dl~~~~~~l~~~Gv~i~ 154 (321)
.|..++|+...| .|++++.+.|+++|++..
T Consensus 181 ~G~~~NH~T~~v~~l~~~~dI~~v~~~l~~~G~~~n 216 (302)
T PF07063_consen 181 HGYHINHFTPRVNRLKKFLDIDAVNAFLKERGIPMN 216 (302)
T ss_dssp HTCS-SEEEEETTT-TT-S-HHHHHHHHHHTT--B-
T ss_pred cccccceeeceeecccccccHHHHHHHHHHcCCCcc
Confidence 345799999999 999999999999999987
No 200
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=48.02 E-value=42 Score=21.68 Aligned_cols=26 Identities=23% Similarity=0.294 Sum_probs=22.7
Q ss_pred CeeEEEEEeCCHHHHHHHHHHCCCee
Q 020803 258 AYAQIAIGTDDVYKTAEAIKLFGGKV 283 (321)
Q Consensus 258 ~~~hi~f~v~dl~~~~~~l~~~G~~~ 283 (321)
+...+.+.+++.+.+.+.|+++|.++
T Consensus 39 ~~~~v~~~ve~~~~~~~~L~~~G~~v 64 (65)
T cd04882 39 GKALLIFRTEDIEKAIEVLQERGVEL 64 (65)
T ss_pred CeEEEEEEeCCHHHHHHHHHHCCceE
Confidence 45678899999999999999999875
No 201
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=43.63 E-value=61 Score=21.49 Aligned_cols=29 Identities=10% Similarity=0.009 Sum_probs=21.7
Q ss_pred CeeEEEEEe--CCHHHHHHHHHHCCCeeecC
Q 020803 258 AYAQIAIGT--DDVYKTAEAIKLFGGKVTRE 286 (321)
Q Consensus 258 ~~~hi~f~v--~dl~~~~~~l~~~G~~~~~~ 286 (321)
+...+.|.+ .|.+.+.+.|+++|.++.++
T Consensus 41 ~~~~v~i~v~~~~~~~~~~~L~~~G~~v~~~ 71 (72)
T cd04883 41 DNKILVFRVQTMNPRPIIEDLRRAGYEVLWP 71 (72)
T ss_pred CeEEEEEEEecCCHHHHHHHHHHCCCeeeCC
Confidence 344455555 48889999999999998764
No 202
>PRK11700 hypothetical protein; Provisional
Probab=42.01 E-value=2e+02 Score=23.87 Aligned_cols=78 Identities=9% Similarity=-0.013 Sum_probs=43.9
Q ss_pred CCceEEEEEeCChhHHHHHHHHhcCCeeecccC-CCCCceEEEEeccCC---CCcceEEEeeeccCCCccCCCCCeeEEE
Q 020803 188 EPLCQVMLRVGDLDRSINFYEQAFGMELLRKRD-NPEYKYTIAMMGYGP---EDKNVVLELTYNYGVTDYDKGNAYAQIA 263 (321)
Q Consensus 188 ~~l~hi~l~v~D~e~a~~FY~~vLG~~~~~~~~-~~~~~~~~~~~~~~~---~~~~~~lel~~~~~~~~~~~~~~~~hi~ 263 (321)
-.+|||+|+|.+.+.|.+|-...+-.-..-... ..+-...++.+.-+- +..-.-+||.++.+ ...+..|.-|+.
T Consensus 38 ~~~DHialR~n~~~tAe~w~~~l~~~G~llSen~INGRPI~l~~L~qPl~~~~w~I~cvELP~P~~--k~Yp~eGWEHIE 115 (187)
T PRK11700 38 LEADHIALRCNQNETAERWRQGFLQCGELLSENIINGRPICLFELDQPLQVGHWSIDCVELPYPGE--KRYPHEGWEHIE 115 (187)
T ss_pred ccCcEEEEeeCCHHHHHHHHHHHHHhchhhhccccCCeeEEEEEcCCCceeCCcEEEEEEeCCCCC--CCCCCCCceEEE
Confidence 468999999999999999998866543222111 112122233332111 11234456655332 122335788999
Q ss_pred EEeC
Q 020803 264 IGTD 267 (321)
Q Consensus 264 f~v~ 267 (321)
+.++
T Consensus 116 lVlp 119 (187)
T PRK11700 116 LVLP 119 (187)
T ss_pred EEec
Confidence 9986
No 203
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=41.85 E-value=53 Score=25.03 Aligned_cols=85 Identities=24% Similarity=0.298 Sum_probs=50.7
Q ss_pred EEEEEeCCHHHHHHHHHHcCCeeeeCC------cccCCCCeEEE-EEECCCCcEEEEEecCCCCCCceEEEEEeCChhHH
Q 020803 131 HFGIAVDDVAKTVELIKAKGGKVTREP------GPVKGGNTVIA-FIEDPDGYKFELLERGPTPEPLCQVMLRVGDLDRS 203 (321)
Q Consensus 131 hl~f~v~dl~~~~~~l~~~Gv~i~~~p------~~~~~g~~~~~-~~~DPdG~~iel~~~~~~~~~l~hi~l~v~D~e~a 203 (321)
-+-+-|++-+++++.|+++|..+.... ...|+|-.+++ .+.|-|=|.=-++.... ...=.-+.++|.|++++
T Consensus 44 IiRmvV~~~d~A~~~Lee~gF~Vr~~dVlaVEmeD~PG~l~~I~~vl~d~diNldYiYAFv~-ek~KAlli~r~ed~d~~ 122 (142)
T COG4747 44 IIRMVVDRPDEAHSVLEEAGFTVRETDVLAVEMEDVPGGLSRIAEVLGDADINLDYIYAFVT-EKQKALLIVRVEDIDRA 122 (142)
T ss_pred eEEEEcCChHHHHHHHHHCCcEEEeeeEEEEEecCCCCcHHHHHHHHhhcCcCceeeeeeee-cCceEEEEEEhhHHHHH
Confidence 356778999999999999997764321 12333222222 23444433222222111 11334456788999999
Q ss_pred HHHHHHhcCCeeec
Q 020803 204 INFYEQAFGMELLR 217 (321)
Q Consensus 204 ~~FY~~vLG~~~~~ 217 (321)
+.-.++ .|.+...
T Consensus 123 ~~aLed-~gi~~~~ 135 (142)
T COG4747 123 IKALED-AGIKLIG 135 (142)
T ss_pred HHHHHH-cCCeecC
Confidence 999987 7777654
No 204
>PF07063 DUF1338: Domain of unknown function (DUF1338); InterPro: IPR009770 This domain is found in a variety of bacterial and fungal hypothetical proteins of unknown function. The structure of this domain has been solved by structural genomics. The structure implies a zinc-binding function, so it is a putative metal hydrolase (information derived from TOPSAN for PDB:3iuz).; PDB: 3LHO_A 3IUZ_A 2RJB_C.
Probab=40.77 E-value=56 Score=29.47 Aligned_cols=30 Identities=13% Similarity=0.056 Sum_probs=23.2
Q ss_pred CCCCeeEEEEEe------CCHHHHHHHHHHCCCeee
Q 020803 255 KGNAYAQIAIGT------DDVYKTAEAIKLFGGKVT 284 (321)
Q Consensus 255 ~~~~~~hi~f~v------~dl~~~~~~l~~~G~~~~ 284 (321)
.|..++|+...| .||+++.+.++++|+++.
T Consensus 181 ~G~~~NH~T~~v~~l~~~~dI~~v~~~l~~~G~~~n 216 (302)
T PF07063_consen 181 HGYHINHFTPRVNRLKKFLDIDAVNAFLKERGIPMN 216 (302)
T ss_dssp HTCS-SEEEEETTT-TT-S-HHHHHHHHHHTT--B-
T ss_pred cccccceeeceeecccccccHHHHHHHHHHcCCCcc
Confidence 567899999999 999999999999999876
No 205
>COG3254 Uncharacterized conserved protein [Function unknown]
Probab=40.54 E-value=56 Score=24.28 Aligned_cols=37 Identities=11% Similarity=-0.036 Sum_probs=28.9
Q ss_pred HHHHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEEEEEecccccc
Q 020803 270 YKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDNVDFLK 318 (321)
Q Consensus 270 ~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~~~~~ 318 (321)
.++.+.|+++|++ .+++|+.+|..+++..++..++..
T Consensus 27 PE~~a~lk~agi~------------nYSIfLde~~n~lFgy~E~~d~~a 63 (105)
T COG3254 27 PELLALLKEAGIR------------NYSIFLDEEENLLFGYWEYEDFEA 63 (105)
T ss_pred HHHHHHHHHcCCc------------eeEEEecCCcccEEEEEEEcChHH
Confidence 4567778888875 478999999999999988775544
No 206
>cd07268 Glo_EDI_BRP_like_4 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=39.42 E-value=2e+02 Score=22.98 Aligned_cols=78 Identities=17% Similarity=0.270 Sum_probs=46.9
Q ss_pred ceEEEEEeCCH---HHHHHHHHHcCCeeeeCCcccCCCCeEEEEEE--CC---CCcEEEEEecCC------CCCCceEEE
Q 020803 129 FGHFGIAVDDV---AKTVELIKAKGGKVTREPGPVKGGNTVIAFIE--DP---DGYKFELLERGP------TPEPLCQVM 194 (321)
Q Consensus 129 ~~hl~f~v~dl---~~~~~~l~~~Gv~i~~~p~~~~~g~~~~~~~~--DP---dG~~iel~~~~~------~~~~l~hi~ 194 (321)
+.|+|++|.+. +.+.+.+.+.|--+.... . + ++.++.|. -| .|..|+.++-.- +..+..||.
T Consensus 2 ~DHialR~n~~~~A~~w~~~l~~~G~llSen~--I-N-GRPI~l~~L~qPl~~~~~~I~cvELP~P~~k~Yp~eGWEHIE 77 (149)
T cd07268 2 IDHIALRVNENQTAERWKEGLLQCGELLSENE--I-N-GRPIALIKLEKPLQFAGWSISIVELPFPKDKKYPQEGWEHIE 77 (149)
T ss_pred CceEEEeeCCHHHHHHHHHHHHHhchhhhccc--c-C-CeeEEEEEcCCCceeCCcEEEEEEeCCCCCCCCCCCCceEEE
Confidence 35999999984 446777777775554321 1 1 33333332 33 477888887542 235799999
Q ss_pred EEeCChhH-HHHHHHHh
Q 020803 195 LRVGDLDR-SINFYEQA 210 (321)
Q Consensus 195 l~v~D~e~-a~~FY~~v 210 (321)
++++-..+ +..+-...
T Consensus 78 ~Vlp~~~~~~~~~~~~l 94 (149)
T cd07268 78 IVIPSPPQESIELRAPL 94 (149)
T ss_pred EEecCCcchHHHHHHHh
Confidence 99984333 44444333
No 207
>cd07268 Glo_EDI_BRP_like_4 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=39.01 E-value=2e+02 Score=22.94 Aligned_cols=76 Identities=12% Similarity=0.105 Sum_probs=42.8
Q ss_pred ceEEEEEeCChhHHHHHHHHhcCCeeecccCC-CCCceEEEEeccCC---CCcceEEEeeeccCCCccCCCCCeeEEEEE
Q 020803 190 LCQVMLRVGDLDRSINFYEQAFGMELLRKRDN-PEYKYTIAMMGYGP---EDKNVVLELTYNYGVTDYDKGNAYAQIAIG 265 (321)
Q Consensus 190 l~hi~l~v~D~e~a~~FY~~vLG~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~lel~~~~~~~~~~~~~~~~hi~f~ 265 (321)
+|||+|+|.+.+.|.+|.+..+-.-..-.... .+-...++.+.-.- +..-.-+||.++.+ .. .+..|.-|+.+.
T Consensus 2 ~DHialR~n~~~~A~~w~~~l~~~G~llSen~INGRPI~l~~L~qPl~~~~~~I~cvELP~P~~-k~-Yp~eGWEHIE~V 79 (149)
T cd07268 2 IDHIALRVNENQTAERWKEGLLQCGELLSENEINGRPIALIKLEKPLQFAGWSISIVELPFPKD-KK-YPQEGWEHIEIV 79 (149)
T ss_pred CceEEEeeCCHHHHHHHHHHHHHhchhhhccccCCeeEEEEEcCCCceeCCcEEEEEEeCCCCC-CC-CCCCCceEEEEE
Confidence 69999999999999999988775433222211 12122233232111 11234455654322 12 234588899999
Q ss_pred eC
Q 020803 266 TD 267 (321)
Q Consensus 266 v~ 267 (321)
++
T Consensus 80 lp 81 (149)
T cd07268 80 IP 81 (149)
T ss_pred ec
Confidence 85
No 208
>PRK11700 hypothetical protein; Provisional
Probab=37.15 E-value=2.4e+02 Score=23.40 Aligned_cols=79 Identities=11% Similarity=0.107 Sum_probs=47.5
Q ss_pred ceEEEEEeCC---HHHHHHHHHHcCCeeeeCCcccCCCCeEEEEEE--CC---CCcEEEEEecCC------CCCCceEEE
Q 020803 129 FGHFGIAVDD---VAKTVELIKAKGGKVTREPGPVKGGNTVIAFIE--DP---DGYKFELLERGP------TPEPLCQVM 194 (321)
Q Consensus 129 ~~hl~f~v~d---l~~~~~~l~~~Gv~i~~~p~~~~~g~~~~~~~~--DP---dG~~iel~~~~~------~~~~l~hi~ 194 (321)
+.|+|++|.+ .+++.+.+.+.|--+.... . + |+.++.|. -| .|..|+.++-.- +..+..||.
T Consensus 40 ~DHialR~n~~~tAe~w~~~l~~~G~llSen~--I-N-GRPI~l~~L~qPl~~~~w~I~cvELP~P~~k~Yp~eGWEHIE 115 (187)
T PRK11700 40 ADHIALRCNQNETAERWRQGFLQCGELLSENI--I-N-GRPICLFELDQPLQVGHWSIDCVELPYPGEKRYPHEGWEHIE 115 (187)
T ss_pred CcEEEEeeCCHHHHHHHHHHHHHhchhhhccc--c-C-CeeEEEEEcCCCceeCCcEEEEEEeCCCCCCCCCCCCceEEE
Confidence 4599999997 4557777777775553321 1 1 33343332 33 577888887542 235799999
Q ss_pred EEeC-ChhHHHHHHHHhc
Q 020803 195 LRVG-DLDRSINFYEQAF 211 (321)
Q Consensus 195 l~v~-D~e~a~~FY~~vL 211 (321)
++++ +.+....+-...|
T Consensus 116 lVlp~~~~t~~~~~~all 133 (187)
T PRK11700 116 LVLPGDPETLDARALALL 133 (187)
T ss_pred EEecCCcchHHHHHHHhc
Confidence 9997 4444444443433
No 209
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.00 E-value=1.1e+02 Score=26.13 Aligned_cols=21 Identities=19% Similarity=0.545 Sum_probs=18.2
Q ss_pred CChhHHHHHHHHhcCCeeecc
Q 020803 198 GDLDRSINFYEQAFGMELLRK 218 (321)
Q Consensus 198 ~D~e~a~~FY~~vLG~~~~~~ 218 (321)
.|+.+++.||.+.||+++...
T Consensus 145 a~~~e~a~wy~dyLGleie~~ 165 (246)
T KOG4657|consen 145 ADIHEAASWYNDYLGLEIEAG 165 (246)
T ss_pred hccHHHHHHHHHhcCceeeec
Confidence 478899999999999998654
No 210
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=35.49 E-value=1.7e+02 Score=23.63 Aligned_cols=58 Identities=16% Similarity=0.064 Sum_probs=37.3
Q ss_pred CeeEEEEEeCCHHHHHHHHHHCCCee--ecCCcc------------CCC-----CCceEEEEECCCCCEEEEEeccc
Q 020803 258 AYAQIAIGTDDVYKTAEAIKLFGGKV--TREPGP------------LPG-----INTKITACLDPDGWKTVFVDNVD 315 (321)
Q Consensus 258 ~~~hi~f~v~dl~~~~~~l~~~G~~~--~~~p~~------------~~~-----~~~~~~~~~DPdG~~iel~~~~~ 315 (321)
+...++++++++.+..+-..++|.++ .+++.. ..+ +..|..|+.|+||..........
T Consensus 64 ~a~V~GIS~Ds~~~~~~F~~k~~L~f~LLSD~~~~v~~~ygv~~~k~~~gk~~~~~~R~TfvId~dG~I~~~~~~v~ 140 (157)
T COG1225 64 GAVVLGISPDSPKSHKKFAEKHGLTFPLLSDEDGEVAEAYGVWGEKKMYGKEYMGIERSTFVIDPDGKIRYVWRKVK 140 (157)
T ss_pred CCEEEEEeCCCHHHHHHHHHHhCCCceeeECCcHHHHHHhCcccccccCccccccccceEEEECCCCeEEEEecCCC
Confidence 55677777788777777777777663 222210 011 12378899999999988874433
No 211
>PTZ00056 glutathione peroxidase; Provisional
Probab=34.24 E-value=1.4e+02 Score=24.92 Aligned_cols=18 Identities=6% Similarity=-0.023 Sum_probs=14.7
Q ss_pred eEEEEECCCCCEEEEEec
Q 020803 296 KITACLDPDGWKTVFVDN 313 (321)
Q Consensus 296 ~~~~~~DPdG~~iel~~~ 313 (321)
...|+.|++|+.+.....
T Consensus 146 ~~tflID~~G~iv~~~~g 163 (199)
T PTZ00056 146 FGKFLVNKSGNVVAYFSP 163 (199)
T ss_pred CEEEEECCCCcEEEEeCC
Confidence 358999999999987654
No 212
>PF06185 YecM: YecM protein; InterPro: IPR010393 This family consists of several bacterial YecM proteins of unknown function.; PDB: 1K4N_A.
Probab=33.74 E-value=1.8e+02 Score=24.14 Aligned_cols=75 Identities=15% Similarity=0.273 Sum_probs=41.5
Q ss_pred ceEEEEEeCC---HHHHHHHHHHcCCeeeeCCcccCCCCeEEEEE--ECC---CCcEEEEEecCC------CCCCceEEE
Q 020803 129 FGHFGIAVDD---VAKTVELIKAKGGKVTREPGPVKGGNTVIAFI--EDP---DGYKFELLERGP------TPEPLCQVM 194 (321)
Q Consensus 129 ~~hl~f~v~d---l~~~~~~l~~~Gv~i~~~p~~~~~g~~~~~~~--~DP---dG~~iel~~~~~------~~~~l~hi~ 194 (321)
+.|+|++|.+ .+.+.+.+.+.| ++..+- .. + |+.+..| .-| .|..|++++-.- +..+..||.
T Consensus 35 ~DHialRvn~~~~A~~~~~~l~~~G-~llSen-~I-N-GRPI~l~~L~qPL~~~~~~I~~vELP~P~~K~Yp~eGWEHIE 110 (185)
T PF06185_consen 35 IDHIALRVNSNETAERWKQALLQCG-ELLSEN-MI-N-GRPICLFKLNQPLQFGGWSIDCVELPYPKDKRYPQEGWEHIE 110 (185)
T ss_dssp EEEEEEE-S-HHHHHHHHHHHTTTE-EEEEEE-EE-T-TEEEEEEEEEEEEEETTEEEEEEEEE---SS--SS-EEEEEE
T ss_pred CcEEEEecCCHHHHHHHHHHHHHhC-hhhhhc-ee-C-CeeEEEEEcCCchhcCCeeEEEEEeCCCCCCCCCCCCceEEE
Confidence 5699999998 444677777777 443332 12 2 3444333 333 577888887542 235799999
Q ss_pred EEeCChhHHHHHHHH
Q 020803 195 LRVGDLDRSINFYEQ 209 (321)
Q Consensus 195 l~v~D~e~a~~FY~~ 209 (321)
++++-...+ +..+
T Consensus 111 ~Vip~~~~~--~~~~ 123 (185)
T PF06185_consen 111 FVIPSDAQT--LLEQ 123 (185)
T ss_dssp EE--S-GGG--HHHH
T ss_pred EEecCCHHH--HHHH
Confidence 999865554 4444
No 213
>COG5397 Uncharacterized conserved protein [Function unknown]
Probab=31.06 E-value=52 Score=29.03 Aligned_cols=51 Identities=20% Similarity=0.293 Sum_probs=33.9
Q ss_pred EEEEeCC-HHHHHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEEEEEecc
Q 020803 262 IAIGTDD-VYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDNV 314 (321)
Q Consensus 262 i~f~v~d-l~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~ 314 (321)
++..|+| +..+.+.|+...-.+ .|.++.-+.+++..|..++|+.+||...+
T Consensus 161 iS~evdDsl~~il~lLr~~D~sF--rpvPh~~d~ak~~~fqn~~~y~VefLTtn 212 (349)
T COG5397 161 ISREVDDSLPPILDLLRSVDPSF--RPVPHRSDPAKSSAFQNRDGYRVEFLTTN 212 (349)
T ss_pred hhHHhcccccHHHHHHhccCccc--ccCCccCCCccceeeecCCCeEEEEeccC
Confidence 4445554 677778887555444 44443333356777799999999999854
No 214
>PF09142 TruB_C: tRNA Pseudouridine synthase II, C terminal; InterPro: IPR015225 Pseudouridine synthases catalyse the isomerisation of uridine to pseudouridine (Psi) in a variety of RNA molecules, and may function as RNA chaperones. Pseudouridine is the most abundant modified nucleotide found in all cellular RNAs. There are four distinct families of pseudouridine synthases that share no global sequence similarity, but which do share the same fold of their catalytic domain(s) and uracil-binding site and are descended from a common molecular ancestor. The catalytic domain consists of two subdomains, each of which has an alpha+beta structure that has some similarity to the ferredoxin-like fold (note: some pseudouridine synthases contain additional domains). The active site is the most conserved structural region of the superfamily and is located between the two homologous domains. These families are []: Pseudouridine synthase I, TruA. Pseudouridine synthase II, TruB, which contains and additional C-terminal PUA domain. Pseudouridine synthase RsuA (ribosomal small subunit) and RluC/RluD (ribosomal large subunits), both of which contain an additional N-terminal alpha-L RNA-binding motif. Pseudouridine synthase TruD, which has a natural circular permutation in the catalytic domain, as well as an insertion of a family-specific alpha+beta subdomain. TruB is responsible for the pseudouridine residue present in the T loops of virtually all tRNAs. TruB recognises the preformed 3-D structure of the T loop primarily through shape complementarity. It accesses its substrate uridyl residue by flipping out the nucleotide and disrupts the tertiary structure of tRNA []. The C-terminal domain adopts a secondary structure consisting of a four-stranded beta sheet and one alpha helix, similar to that found in PUA domains. It is predominantly involved in RNA-binding, being mostly found in tRNA pseudouridine synthase B (TruB) []. ; GO: 0003723 RNA binding, 0009982 pseudouridine synthase activity, 0001522 pseudouridine synthesis, 0009451 RNA modification; PDB: 1SGV_B.
Probab=30.61 E-value=94 Score=20.16 Aligned_cols=43 Identities=14% Similarity=0.184 Sum_probs=22.8
Q ss_pred CHHHHHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEEEEEecccc
Q 020803 268 DVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDNVDF 316 (321)
Q Consensus 268 dl~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~~~ 316 (321)
++++..++...+|-.+... .. ...+-..+|||..+-|++..+-
T Consensus 5 ~ls~~ea~~l~~Gr~l~~~-----~~-~g~~aa~~pdG~lvAL~~~~g~ 47 (56)
T PF09142_consen 5 ELSAEEARDLRHGRRLPAA-----GP-PGPVAAFAPDGRLVALLEERGG 47 (56)
T ss_dssp E--HHHHHHHHTT---B-----------S-EEEE-TTS-EEEEEEEETT
T ss_pred ECCHHHHHHHhCCCccCCC-----CC-CceEEEECCCCcEEEEEEccCC
Confidence 4566667777888776432 11 2346689999999999987654
No 215
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=30.32 E-value=1.4e+02 Score=20.71 Aligned_cols=41 Identities=10% Similarity=-0.033 Sum_probs=28.2
Q ss_pred HHHHHHHHHHCCCeeecCCccCCCC-CceEEEEECCCCCEEE
Q 020803 269 VYKTAEAIKLFGGKVTREPGPLPGI-NTKITACLDPDGWKTV 309 (321)
Q Consensus 269 l~~~~~~l~~~G~~~~~~p~~~~~~-~~~~~~~~DPdG~~ie 309 (321)
+-.+...|.+.|+.+...--...+. .--.||++|.+|..+.
T Consensus 15 L~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~~g~kl~ 56 (75)
T cd04897 15 LFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKDGRTLS 56 (75)
T ss_pred HHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcCCCCccC
Confidence 5677888899999876543222221 1257899999999873
No 216
>COG0264 Tsf Translation elongation factor Ts [Translation, ribosomal structure and biogenesis]
Probab=29.79 E-value=73 Score=28.45 Aligned_cols=52 Identities=19% Similarity=0.105 Sum_probs=37.5
Q ss_pred CCHHHHHHHHHHCCCeeecCCccCCCCCceEEEEECCC---CCEEEEEecccccc
Q 020803 267 DDVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPD---GWKTVFVDNVDFLK 318 (321)
Q Consensus 267 ~dl~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPd---G~~iel~~~~~~~~ 318 (321)
.|++.+.+.|++.|+.-...-.....--|..+...+++ |.++|+-..++|..
T Consensus 32 Gd~EkAie~LR~kG~akA~KKa~R~AaEGli~~~~~~~~~~av~vEvN~ETDFVA 86 (296)
T COG0264 32 GDIEKAIEWLREKGIAKAAKKAGRIAAEGLIAAKVDGDGKKAVLVEVNCETDFVA 86 (296)
T ss_pred CCHHHHHHHHHHhchHhhhhhcCcchhcceEEEEEcCCCcEEEEEEEecccccee
Confidence 58999999999999864332222222225677888888 78899999999864
No 217
>PRK09750 hypothetical protein; Provisional
Probab=29.22 E-value=32 Score=22.51 Aligned_cols=18 Identities=28% Similarity=0.318 Sum_probs=13.6
Q ss_pred CCCccchhhhhhhhhhHh
Q 020803 16 NGSRKTKEECFMLFIVLE 33 (321)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~ 33 (321)
..+..|++||..+|.=.+
T Consensus 24 s~~~mtk~ECeK~~s~~k 41 (64)
T PRK09750 24 SKSKLTKSECEKMLSGKK 41 (64)
T ss_pred cCCcCCHHHHHHHhcccc
Confidence 456789999999976443
No 218
>PF09066 B2-adapt-app_C: Beta2-adaptin appendage, C-terminal sub-domain; InterPro: IPR015151 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. AP (adaptor protein) complexes are found in coated vesicles and clathrin-coated pits. AP complexes connect cargo proteins and lipids to clathrin at vesicle budding sites, as well as binding accessory proteins that regulate coat assembly and disassembly (such as AP180, epsins and auxilin). There are different AP complexes in mammals. AP1 is responsible for the transport of lysosomal hydrolases between the TGN and endosomes []. AP2 associates with the plasma membrane and is responsible for endocytosis []. AP3 is responsible for protein trafficking to lysosomes and other related organelles []. AP4 is less well characterised. AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). For example, in AP1 these subunits are gamma-1-adaptin, beta-1-adaptin, mu-1 and sigma-1, while in AP2 they are alpha-adaptin, beta-2-adaptin, mu-2 and sigma-2. Each subunit has a specific function. Adaptins recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal ear (appendage) domains. Mu recognises tyrosine-based sorting signals within the cytoplasmic domains of transmembrane cargo proteins []. One function of clathrin and AP2 complex-mediated endocytosis is to regulate the number of GABA(A) receptors available at the cell surface []. This entry represents a subdomain of the appendage (ear) domain of beta-adaptin from AP clathrin adaptor complexes. This domain has a three-layer arrangement, alpha-beta-alpha, with a bifurcated antiparallel beta-sheet []. This domain is required for binding to clathrin, and its subsequent polymerisation. Furthermore, a hydrophobic patch present in the domain also binds to a subset of D-phi-F/W motif-containing proteins that are bound by the alpha-adaptin appendage domain (epsin, AP180, eps15) []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030131 clathrin adaptor complex; PDB: 1E42_B 2G30_A 2IV9_B 2IV8_A 3HS9_A 3H1Z_A.
Probab=28.57 E-value=2.5e+02 Score=20.82 Aligned_cols=68 Identities=13% Similarity=0.124 Sum_probs=39.6
Q ss_pred CCHHHHHHHHHHcCCeeeeCCcccCCCCeEEEEE--ECCCCcE--EEEEecCCCCCCceEEEEEeCChhHHHHHHH
Q 020803 137 DDVAKTVELIKAKGGKVTREPGPVKGGNTVIAFI--EDPDGYK--FELLERGPTPEPLCQVMLRVGDLDRSINFYE 208 (321)
Q Consensus 137 ~dl~~~~~~l~~~Gv~i~~~p~~~~~g~~~~~~~--~DPdG~~--iel~~~~~~~~~l~hi~l~v~D~e~a~~FY~ 208 (321)
.+.+.+.++|+++++-....- ..++ +...+|+ ++..|.. +|+.-.. ..+-..+++.+++.+-+..|+.
T Consensus 36 ~~~~~i~~~L~~~nI~~iA~~-~~~~-~~~~~y~s~~~~~~~~fL~El~~~~--~~~~~~v~vK~~~~~~~~~f~~ 107 (114)
T PF09066_consen 36 PSPDAIEEKLQANNIFTIASG-KVDN-GQKFFYFSAKTTNGIWFLVELTIDP--GSPSVKVTVKSENPEMAPLFLQ 107 (114)
T ss_dssp --HHHHHHHHHCTT-EEEEEE-ECTT--EEEEEEEEEBTTS-EEEEEEEE-T--T-SSEEEEEEESSCCCHHHHHH
T ss_pred CcHHHHHHHHHHCCEEEEecC-CCCc-cccEEEEEEEcCCCcEEEEEEEEcC--CCccEEEEEecCCHHHHHHHHH
Confidence 579999999999998875432 2222 3444444 4666553 3444332 2346789999999877777764
No 219
>COG1437 CyaB Adenylate cyclase, class 2 (thermophilic) [Nucleotide transport and metabolism]
Probab=28.34 E-value=3.4e+02 Score=22.39 Aligned_cols=135 Identities=18% Similarity=0.211 Sum_probs=74.9
Q ss_pred EEEEeCCHHHHHHHHHHcCCeeeeCCccc------CCC----CeEEEEEECCCCcEEEEEecCC----CCCCceEEEEEe
Q 020803 132 FGIAVDDVAKTVELIKAKGGKVTREPGPV------KGG----NTVIAFIEDPDGYKFELLERGP----TPEPLCQVMLRV 197 (321)
Q Consensus 132 l~f~v~dl~~~~~~l~~~Gv~i~~~p~~~------~~g----~~~~~~~~DPdG~~iel~~~~~----~~~~l~hi~l~v 197 (321)
+=+.+.|.+...++|++.|.......... +.+ ....+.++.-+|+...+..-+| ......-+.+.+
T Consensus 6 vK~~v~d~e~i~~~l~~~~~~~~~~e~q~DiYf~~p~rdf~~tdealRiR~~~~~~~~lTYKgp~ld~~~k~r~E~E~~v 85 (178)
T COG1437 6 VKFRVRDLEEIRERLASLGAKFIKEEEQEDIYFDHPCRDFADTDEALRIRRINGGEVFLTYKGPKLDRESKTREEIEIEV 85 (178)
T ss_pred EEEEecCHHHHHHHHHhccccccceeeeeeeeeecCCcchhcCcceeEEEEecCCcEEEEEecccccccccceeeEEEEe
Confidence 34667789999999999987654432111 110 0122334422233333333322 123467788899
Q ss_pred CChhHHHHHHHHhcCCeeecccCCCCCceEEEEeccCCCCcceEEEeeeccCCCccCCCCCeeEEEEEeCCHHH------
Q 020803 198 GDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGTDDVYK------ 271 (321)
Q Consensus 198 ~D~e~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~~~hi~f~v~dl~~------ 271 (321)
.|++++..-... |||.......- .+..+... ...+++-... .-+.+.-+...++|-.+
T Consensus 86 ~D~~~~~~il~~-LGF~~~~~VkK----~R~iY~~~-----~~~i~lD~Ve------gLG~F~EIE~~~~d~~e~~~~~~ 149 (178)
T COG1437 86 SDVEKALEILKR-LGFKEVAVVKK----TREIYKVG-----NVTIELDAVE------GLGDFLEIEVMVDDENEIDGAKE 149 (178)
T ss_pred CCHHHHHHHHHH-cCCceeeEEEE----EEEEEeeC-----CEEEEEeccc------CCcccEEEEEecCCchhhHHHHH
Confidence 999999999966 99997654321 22222221 3445444311 11234455555665333
Q ss_pred -HHHHHHHCCCe
Q 020803 272 -TAEAIKLFGGK 282 (321)
Q Consensus 272 -~~~~l~~~G~~ 282 (321)
+.+.+++.|++
T Consensus 150 ~~~~i~~~lGl~ 161 (178)
T COG1437 150 EIEEIARQLGLK 161 (178)
T ss_pred HHHHHHHHhCCC
Confidence 67888889985
No 220
>PF06688 DUF1187: Protein of unknown function (DUF1187); InterPro: IPR009572 This family consists of several short, hypothetical bacterial proteins of around 62 residues in length. Members of this family are found in Escherichia coli and Salmonella typhi. The function of this family is unknown.
Probab=27.81 E-value=30 Score=22.73 Aligned_cols=20 Identities=30% Similarity=0.444 Sum_probs=16.8
Q ss_pred CCCCccchhhhhhhhhhHhH
Q 020803 15 WNGSRKTKEECFMLFIVLEI 34 (321)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~ 34 (321)
+..+..|+.||.++|...+.
T Consensus 20 ys~~kmT~~eCek~fs~~ke 39 (61)
T PF06688_consen 20 YSDSKMTKAECEKMFSKPKE 39 (61)
T ss_pred ecCCccCHHHHHHhccCcCc
Confidence 35788999999999987776
No 221
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=27.36 E-value=71 Score=16.52 Aligned_cols=14 Identities=21% Similarity=0.119 Sum_probs=9.9
Q ss_pred eEEEEECCCCCEEE
Q 020803 296 KITACLDPDGWKTV 309 (321)
Q Consensus 296 ~~~~~~DPdG~~ie 309 (321)
-...+.|++|++|-
T Consensus 7 I~~i~~D~~G~lWi 20 (24)
T PF07494_consen 7 IYSIYEDSDGNLWI 20 (24)
T ss_dssp EEEEEE-TTSCEEE
T ss_pred EEEEEEcCCcCEEE
Confidence 34678999999873
No 222
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=26.80 E-value=1.2e+02 Score=21.22 Aligned_cols=26 Identities=27% Similarity=0.395 Sum_probs=21.8
Q ss_pred eEEEEEeCC----HHHHHHHHHHcCCeeee
Q 020803 130 GHFGIAVDD----VAKTVELIKAKGGKVTR 155 (321)
Q Consensus 130 ~hl~f~v~d----l~~~~~~l~~~Gv~i~~ 155 (321)
..+.++++| ++.+.+.|+++|+++..
T Consensus 42 v~i~ie~~~~~~~~~~i~~~L~~~G~~~~~ 71 (85)
T cd04906 42 IFVGVSVANGAEELAELLEDLKSAGYEVVD 71 (85)
T ss_pred EEEEEEeCCcHHHHHHHHHHHHHCCCCeEE
Confidence 356788888 99999999999998754
No 223
>PRK13490 chemoreceptor glutamine deamidase CheD; Provisional
Probab=26.51 E-value=1.2e+02 Score=24.65 Aligned_cols=41 Identities=12% Similarity=0.058 Sum_probs=29.9
Q ss_pred eCCHHHHHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEE
Q 020803 266 TDDVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKT 308 (321)
Q Consensus 266 v~dl~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~i 308 (321)
-.|++.+.+.|++.|+++..+ +..+..++.++|.--+|..+
T Consensus 111 ~rNv~~a~~~L~~~gI~i~a~--dvGG~~gR~i~f~~~tG~v~ 151 (162)
T PRK13490 111 NRNGKAVKKKLKELSIPILAE--DIGGNKGRTMIFDTSDGKVY 151 (162)
T ss_pred HHHHHHHHHHHHHcCCcEEEE--ECCCCCCcEEEEECCCCEEE
Confidence 458999999999999998864 33333357777766667553
No 224
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=25.57 E-value=1e+02 Score=29.74 Aligned_cols=38 Identities=26% Similarity=0.200 Sum_probs=27.1
Q ss_pred HHHHHHHHCCCeee-cCCccCCCCCceEEEEECCCCCEEEE
Q 020803 271 KTAEAIKLFGGKVT-REPGPLPGINTKITACLDPDGWKTVF 310 (321)
Q Consensus 271 ~~~~~l~~~G~~~~-~~p~~~~~~~~~~~~~~DPdG~~iel 310 (321)
++...|.++|+++. .+-....| |+....+|+||+..|-
T Consensus 14 ~~a~~La~~g~~vt~~ea~~~~G--Gk~~s~~~~dg~~~E~ 52 (485)
T COG3349 14 AAAYELADAGYDVTLYEARDRLG--GKVASWRDSDGNHVEH 52 (485)
T ss_pred HHHHHHHhCCCceEEEeccCccC--ceeeeeecCCCCeeee
Confidence 35567888898753 33333444 6899999999999883
No 225
>PF03975 CheD: CheD chemotactic sensory transduction; InterPro: IPR005659 CheD deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs). CheD-mediated MCP deamidation is required for productive communication of the conformational signals of the chemoreceptors to the cheA kinase []. CheC is a CheY-P phosphatase (CheY controls flagellar rotation and is activated by phosphorylation). The activity of CheC is enhanced by its interaction with CheD, forming a CheC-CheD heterodimer. It is suggested that CheC exerts its effect on MCP methylation in Bacillus subtilis by controlling the binding of CheD to the MCPs [].; GO: 0050568 protein-glutamine glutaminase activity, 0006935 chemotaxis; PDB: 2F9Z_D.
Probab=24.86 E-value=1e+02 Score=23.17 Aligned_cols=40 Identities=15% Similarity=-0.006 Sum_probs=26.3
Q ss_pred CCHHHHHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEE
Q 020803 267 DDVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKT 308 (321)
Q Consensus 267 ~dl~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~i 308 (321)
.|++.+.+.|++.|+++... ...+..++.++|.--+|..+
T Consensus 64 rNv~~a~~~L~~~gi~I~a~--dvGG~~~R~v~f~~~tG~v~ 103 (114)
T PF03975_consen 64 RNVEAARELLAEEGIPIVAE--DVGGNFGRKVRFDPATGEVW 103 (114)
T ss_dssp HHHHHHHHHHHHTT--EEEE--EE-SSS-EEEEEETTTTEEE
T ss_pred HHHHHHHHHHHHCCCcEEEe--eCCCCCCcEEEEEcCCCEEE
Confidence 58999999999999999864 33333357777766677554
No 226
>PRK13498 chemoreceptor glutamine deamidase CheD; Provisional
Probab=24.77 E-value=1.3e+02 Score=24.44 Aligned_cols=42 Identities=7% Similarity=-0.019 Sum_probs=30.1
Q ss_pred EEeCCHHHHHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCE
Q 020803 264 IGTDDVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWK 307 (321)
Q Consensus 264 f~v~dl~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~ 307 (321)
+.-.|++.+.+.|++.|+++..+ +..+..+|.++|.--+|..
T Consensus 112 IG~rNi~~a~~~L~~~gi~i~a~--DvGG~~gR~i~f~~~tG~v 153 (167)
T PRK13498 112 VADKNIHAALALAEQNGLHLKAQ--DLGSTGHRSIIFDLWNGNV 153 (167)
T ss_pred hHHHHHHHHHHHHHHCCCcEEEE--eCCCCCCcEEEEECCCCEE
Confidence 33468999999999999998865 3333335777776666655
No 227
>PRK12332 tsf elongation factor Ts; Reviewed
Probab=24.57 E-value=1.1e+02 Score=25.62 Aligned_cols=52 Identities=13% Similarity=0.103 Sum_probs=33.4
Q ss_pred CCHHHHHHHHHHCCCeeecCCccCCCCCceEEEEECCCC---CEEEEEecccccc
Q 020803 267 DDVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDG---WKTVFVDNVDFLK 318 (321)
Q Consensus 267 ~dl~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG---~~iel~~~~~~~~ 318 (321)
.|++.+.+.|++.|......-.......|.......|+| .++|+...++|..
T Consensus 31 gd~~~A~~~lr~~g~~~a~kk~~r~~~eG~i~~~i~~~~~~~~lve~n~ETDFVa 85 (198)
T PRK12332 31 GDMEKAIEWLREKGLAKAAKKAGRVAAEGLVGSYIHTGGRIGVLVELNCETDFVA 85 (198)
T ss_pred CCHHHHHHHHHHhhhhHHHHhccccccCceEEEEEecCCCEEEEEEEeccCCccc
Confidence 489999999999997654332222222245555555555 5677777778753
No 228
>PRK13495 chemoreceptor glutamine deamidase CheD; Provisional
Probab=24.54 E-value=1.4e+02 Score=24.20 Aligned_cols=41 Identities=20% Similarity=0.126 Sum_probs=30.3
Q ss_pred eCCHHHHHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEE
Q 020803 266 TDDVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKT 308 (321)
Q Consensus 266 v~dl~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~i 308 (321)
-.|++.+.+.|++.|+++... +..+..++.++|.--+|..+
T Consensus 104 ~rNi~~a~~~L~~~gI~i~a~--dvGG~~gR~i~f~~~tG~v~ 144 (159)
T PRK13495 104 ARNVEAVKKHLKDFGIKLVAE--DTGGNRARSIEYNIETGKLL 144 (159)
T ss_pred HHHHHHHHHHHHHcCCcEEEE--eCCCCCCcEEEEECCCCEEE
Confidence 358999999999999998864 33333357777777777654
No 229
>TIGR00116 tsf translation elongation factor Ts. This protein is found in Bacteria, mitochondria, and chloroplasts.
Probab=24.14 E-value=1e+02 Score=27.57 Aligned_cols=53 Identities=13% Similarity=0.065 Sum_probs=34.6
Q ss_pred CCHHHHHHHHHHCCCeeecCCccCCCCCceEEEEEC-CCCCEEEEEeccccccc
Q 020803 267 DDVYKTAEAIKLFGGKVTREPGPLPGINTKITACLD-PDGWKTVFVDNVDFLKE 319 (321)
Q Consensus 267 ~dl~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~D-PdG~~iel~~~~~~~~~ 319 (321)
.|++.+.+.|++.|......-.......|......| --|.++||-..++|..+
T Consensus 31 gDiekAi~~LRkkG~akA~Kk~~R~a~EG~V~~~~~~~~~~ivElncETDFVAr 84 (290)
T TIGR00116 31 GDFEKAIKNLRESGIAKAAKKADRVAAEGVIVLKSDGNKAVIVEVNSETDFVAK 84 (290)
T ss_pred CCHHHHHHHHHHhchhHHHHhcccccCCcEEEEEEcCCEEEEEEEecCCccccC
Confidence 489999999999997654332222222234443333 44889999999998653
No 230
>PF12687 DUF3801: Protein of unknown function (DUF3801); InterPro: IPR024234 This functionally uncharacterised protein family is found in bacteria. Proteins found in this family are typically between 158 and 187 amino acids in length and include the PcfB protein.
Probab=23.95 E-value=1.8e+02 Score=24.60 Aligned_cols=31 Identities=19% Similarity=0.229 Sum_probs=24.3
Q ss_pred CCCCceEEEEEeCCHHHHHHHHHHcCCeeee
Q 020803 125 IGTGFGHFGIAVDDVAKTVELIKAKGGKVTR 155 (321)
Q Consensus 125 ~~~g~~hl~f~v~dl~~~~~~l~~~Gv~i~~ 155 (321)
.+.++.+|-+.-.|+.++...++..||.+..
T Consensus 30 ~g~~l~~i~i~~~~lk~F~k~AkKyGV~yav 60 (204)
T PF12687_consen 30 QGKGLKNIEITDEDLKEFKKEAKKYGVDYAV 60 (204)
T ss_pred cCCCceEEecCHhhHHHHHHHHHHcCCceEE
Confidence 3556777777667899999999999988753
No 231
>PRK13494 chemoreceptor glutamine deamidase CheD; Provisional
Probab=23.37 E-value=1.5e+02 Score=24.10 Aligned_cols=41 Identities=2% Similarity=-0.005 Sum_probs=30.0
Q ss_pred eCCHHHHHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEE
Q 020803 266 TDDVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKT 308 (321)
Q Consensus 266 v~dl~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~i 308 (321)
-.|++.+.+.|++.|+++..+ +..+..+|.++|.--+|..+
T Consensus 113 ~rNv~~a~~~L~~~gI~i~a~--DvGG~~gR~i~f~~~tG~v~ 153 (163)
T PRK13494 113 LENSEFAVNTLNKYGIPILAK--DFDQSKSRKIFVFPENFKVI 153 (163)
T ss_pred HHHHHHHHHHHHHcCCcEEEE--eCCCCCCcEEEEECCCCEEE
Confidence 468999999999999998864 33333357777766667553
No 232
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=23.29 E-value=1.6e+02 Score=19.23 Aligned_cols=23 Identities=30% Similarity=0.351 Sum_probs=18.9
Q ss_pred EEEEeCCHHHHHHHHHHcCCeee
Q 020803 132 FGIAVDDVAKTVELIKAKGGKVT 154 (321)
Q Consensus 132 l~f~v~dl~~~~~~l~~~Gv~i~ 154 (321)
+-+.++|.+.+.+.|+++|+++.
T Consensus 43 ~rl~~~~~~~~~~~L~~~G~~v~ 65 (66)
T cd04908 43 LRLIVSDPDKAKEALKEAGFAVK 65 (66)
T ss_pred EEEEECCHHHHHHHHHHCCCEEE
Confidence 45666888899999999998863
No 233
>TIGR00318 cyaB adenylyl cyclase CyaB, putative. The protein CyaB from Aeromonas hydrophila is a second adenylyl cyclase from that species, as demonstrated by complementation in E. coli and by assay of the enzymatic properties of purified recombinant protein. It has no detectable homology to any other protein of known function, and has several unusual properties, including an optimal temperature of 65 degrees and an optimal pH of 9.5. A cluster of uncharaterized archaeal homologs may be orthologous and serve (under certain circumstances) to produce the regulatory metabolite cyclic AMP (cAMP).
Probab=22.60 E-value=4.2e+02 Score=21.46 Aligned_cols=80 Identities=16% Similarity=0.325 Sum_probs=46.8
Q ss_pred EEEEeCCHHHHHHHHHHcCCeeeeCCcccCCCCeEEEEEECCCCc------EEEEEe---------cCCC-CCC---ceE
Q 020803 132 FGIAVDDVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGY------KFELLE---------RGPT-PEP---LCQ 192 (321)
Q Consensus 132 l~f~v~dl~~~~~~l~~~Gv~i~~~p~~~~~g~~~~~~~~DPdG~------~iel~~---------~~~~-~~~---l~h 192 (321)
+=+.+.|.+.+.++|++.|......-. ..=.||..|++. .+-+-+ ..+. ... -.-
T Consensus 6 ~K~~v~d~~~~~~~L~~~g~~~~~~~~------q~D~Yfd~p~~~l~~~~~~LRiR~~~~~~~lT~Kgp~~~~~~~~~~E 79 (174)
T TIGR00318 6 VKAKIPDKEKVVEKLKNKGFKFIKKEF------QHDIYFSNPCRDFASTDEALRIRKLTGEKFVTYKGPKIDNESKTRKE 79 (174)
T ss_pred EEEEcCCHHHHHHHHHhcCcccccccc------eEEEeecCCCcchhhCCcEEEEEEcCCcEEEEEeCCccCCcceEEEE
Confidence 346788999999999999866432211 111344444321 111111 1111 111 123
Q ss_pred EEEEeCChhHHHHHHHHhcCCeeecc
Q 020803 193 VMLRVGDLDRSINFYEQAFGMELLRK 218 (321)
Q Consensus 193 i~l~v~D~e~a~~FY~~vLG~~~~~~ 218 (321)
+.+.|.|.+.+.+.+. .||+.+...
T Consensus 80 ~e~~v~d~~~~~~iL~-~LG~~~~~~ 104 (174)
T TIGR00318 80 IEFKIEDIENALQILK-KLGFKKVYE 104 (174)
T ss_pred EEEEECCHHHHHHHHH-HCCCeEEEE
Confidence 6678899999999997 599997543
No 234
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=22.56 E-value=2.6e+02 Score=18.95 Aligned_cols=37 Identities=19% Similarity=0.310 Sum_probs=24.0
Q ss_pred HHHHHHHHHHcCCeeeeC-CcccCCCCeEEEEEECCCC
Q 020803 139 VAKTVELIKAKGGKVTRE-PGPVKGGNTVIAFIEDPDG 175 (321)
Q Consensus 139 l~~~~~~l~~~Gv~i~~~-p~~~~~g~~~~~~~~DPdG 175 (321)
+.++.+.++++|+.+..- ..+.....+.+.|+.|-+|
T Consensus 14 L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~~~ 51 (74)
T cd04904 14 LARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDCEV 51 (74)
T ss_pred HHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEEEc
Confidence 888999999999886542 1122222345677777776
No 235
>PRK13493 chemoreceptor glutamine deamidase CheD; Provisional
Probab=22.18 E-value=1.5e+02 Score=25.21 Aligned_cols=41 Identities=17% Similarity=-0.022 Sum_probs=30.1
Q ss_pred eCCHHHHHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEE
Q 020803 266 TDDVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKT 308 (321)
Q Consensus 266 v~dl~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~i 308 (321)
-.|++.+.+.|++.|+++... +..+..++.++|.--+|..+
T Consensus 138 ~rNi~~a~~~L~~~gI~Iva~--DvGG~~gRki~f~~~tG~v~ 178 (213)
T PRK13493 138 EKNVEFVLEYAKREKLNVVAQ--DLGGAQPRKLLFDPQTGQAW 178 (213)
T ss_pred HHHHHHHHHHHHHcCCcEEEE--eCCCCCCcEEEEECCCCEEE
Confidence 468999999999999999865 33343457777766666553
No 236
>PRK13497 chemoreceptor glutamine deamidase CheD; Provisional
Probab=22.08 E-value=1.6e+02 Score=24.43 Aligned_cols=41 Identities=10% Similarity=0.007 Sum_probs=30.5
Q ss_pred eCCHHHHHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEE
Q 020803 266 TDDVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKT 308 (321)
Q Consensus 266 v~dl~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~i 308 (321)
-.|++.+.+.|++.|+++... +..+..++.++|.--+|..+
T Consensus 111 ~rNi~~a~~~L~~~gI~i~a~--DvGG~~gR~v~f~~~tG~v~ 151 (184)
T PRK13497 111 EQNAAFAMQFLRDEGIPVVGS--STGGEHGRKLEYWPVSGRAR 151 (184)
T ss_pred HHHHHHHHHHHHHcCCcEEEE--eCCCCCCcEEEEECCCCeEE
Confidence 458999999999999998864 33333357777777777664
No 237
>PRK13491 chemoreceptor glutamine deamidase CheD; Provisional
Probab=21.49 E-value=1.7e+02 Score=24.65 Aligned_cols=42 Identities=12% Similarity=0.042 Sum_probs=31.0
Q ss_pred eCCHHHHHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEEE
Q 020803 266 TDDVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTV 309 (321)
Q Consensus 266 v~dl~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~ie 309 (321)
-.|++.+.+.|++.|+++... ...+..++.++|.--+|..+-
T Consensus 114 ~rNie~a~~~L~~~GI~ivae--DvGG~~gRkI~f~~~tG~v~v 155 (199)
T PRK13491 114 QANAAFARRYLRDEGIRCTAH--SLGGNRARRIRFWPKTGRVQQ 155 (199)
T ss_pred HHHHHHHHHHHHHcCCcEEEE--eCCCCCCcEEEEECCCCEEEE
Confidence 358999999999999998865 333334677777777776654
No 238
>PF03975 CheD: CheD chemotactic sensory transduction; InterPro: IPR005659 CheD deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs). CheD-mediated MCP deamidation is required for productive communication of the conformational signals of the chemoreceptors to the cheA kinase []. CheC is a CheY-P phosphatase (CheY controls flagellar rotation and is activated by phosphorylation). The activity of CheC is enhanced by its interaction with CheD, forming a CheC-CheD heterodimer. It is suggested that CheC exerts its effect on MCP methylation in Bacillus subtilis by controlling the binding of CheD to the MCPs [].; GO: 0050568 protein-glutamine glutaminase activity, 0006935 chemotaxis; PDB: 2F9Z_D.
Probab=21.26 E-value=1.9e+02 Score=21.76 Aligned_cols=39 Identities=21% Similarity=0.249 Sum_probs=25.3
Q ss_pred CHHHHHHHHHHcCCeeeeCCcccCCCCeEEEEEECCCCcEE
Q 020803 138 DVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKF 178 (321)
Q Consensus 138 dl~~~~~~l~~~Gv~i~~~p~~~~~g~~~~~~~~DPdG~~i 178 (321)
+++.+.+-|++.|+++..+ +.++..++.++|.--+|..+
T Consensus 65 Nv~~a~~~L~~~gi~I~a~--dvGG~~~R~v~f~~~tG~v~ 103 (114)
T PF03975_consen 65 NVEAARELLAEEGIPIVAE--DVGGNFGRKVRFDPATGEVW 103 (114)
T ss_dssp HHHHHHHHHHHTT--EEEE--EE-SSS-EEEEEETTTTEEE
T ss_pred HHHHHHHHHHHCCCcEEEe--eCCCCCCcEEEEEcCCCEEE
Confidence 6889999999999999866 33443566677666666543
No 239
>COG1395 Predicted transcriptional regulator [Transcription]
Probab=20.40 E-value=99 Score=27.89 Aligned_cols=77 Identities=18% Similarity=0.091 Sum_probs=48.3
Q ss_pred cccceeEEEEeecCCCCccchhhhhhhhhhHhHhcCCchhhhhhhhhhccCccccccceeeeceEEEEEeCCh-hhhhhc
Q 020803 2 QRRQARVLLMKVPWNGSRKTKEECFMLFIVLEIWTGRLSVYMFCFFHLIKPALFLFSFFSFFPLIVVFPAGDG-RFYTEC 80 (321)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~i~Hv~l~V~D~-~FY~~v 80 (321)
-||+-++++|||=.|-...++|+..+|-++++.+ ..++... ..+..-.+... ..--.--++.+-++ .||.=+
T Consensus 35 ar~~~~~~iiKVL~NiD~l~~e~a~eLkkla~~l-~aspivV-----g~r~~~~~LE~-GVVY~R~gV~~vs~~Tf~~~~ 107 (313)
T COG1395 35 ARRDLRLLIIKVLYNIDGLSRETAEELKKLAKSL-LASPIVV-----GLRTKNEPLED-GVVYERYGVPAVSPETFYDYV 107 (313)
T ss_pred EecccceeeeeeeecccccCHHHHHHHHHHHHHh-CCCceEE-----EEecCCCcccc-ceEEEecCceeeCHHHHHHHh
Confidence 3677899999999999999999999999999986 3333221 11111111110 12223346667777 887544
Q ss_pred cCCEE
Q 020803 81 LGMKL 85 (321)
Q Consensus 81 LG~~~ 85 (321)
-|-.+
T Consensus 108 ~Ge~P 112 (313)
T COG1395 108 EGEPP 112 (313)
T ss_pred CCCCc
Confidence 45444
No 240
>PRK13488 chemoreceptor glutamine deamidase CheD; Provisional
Probab=20.24 E-value=1.9e+02 Score=23.32 Aligned_cols=40 Identities=15% Similarity=0.144 Sum_probs=28.8
Q ss_pred eCCHHHHHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCE
Q 020803 266 TDDVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWK 307 (321)
Q Consensus 266 v~dl~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~ 307 (321)
-.|++.+.+.|++.|+++..+ +..+..++.++|.--+|..
T Consensus 106 ~rNi~~a~~~L~~~gi~i~a~--dvGG~~gR~i~f~~~tG~v 145 (157)
T PRK13488 106 ERNIESAKETLKKLGIRIVAE--DVGGDYGRTVKFDLKTGKV 145 (157)
T ss_pred HHHHHHHHHHHHHCCCcEEEE--EcCCCCCcEEEEECCCCEE
Confidence 468999999999999998864 3333335667666666655
Done!