BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 020804
         (321 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3HRW|B Chain B, Crystal Structure Of Hemoglobin From Mouse (Mus
           Musculus)at 2.8
 pdb|3HRW|D Chain D, Crystal Structure Of Hemoglobin From Mouse (Mus
           Musculus)at 2.8
          Length = 146

 Score = 29.3 bits (64), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 2/30 (6%)

Query: 276 NSEGNGGDRFGHLVDVYAWTPHCRYLDGMG 305
           NS+  GG+  G L+ VY WT   RY D  G
Sbjct: 19  NSDEVGGEALGRLLVVYPWTQ--RYFDSFG 46


>pdb|1JEB|B Chain B, Chimeric HumanMOUSE CARBONMONOXY HEMOGLOBIN (HUMAN ZETA2
           Mouse Beta2)
 pdb|1JEB|D Chain D, Chimeric HumanMOUSE CARBONMONOXY HEMOGLOBIN (HUMAN ZETA2
           Mouse Beta2)
          Length = 146

 Score = 27.7 bits (60), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 2/30 (6%)

Query: 276 NSEGNGGDRFGHLVDVYAWTPHCRYLDGMG 305
           N++  GG+  G L+ VY WT   RY D  G
Sbjct: 19  NADEVGGEALGRLLVVYPWTQ--RYFDSFG 46


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.135    0.424 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,866,957
Number of Sequences: 62578
Number of extensions: 416436
Number of successful extensions: 941
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 934
Number of HSP's gapped (non-prelim): 18
length of query: 321
length of database: 14,973,337
effective HSP length: 99
effective length of query: 222
effective length of database: 8,778,115
effective search space: 1948741530
effective search space used: 1948741530
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)