Query 020804
Match_columns 321
No_of_seqs 80 out of 82
Neff 3.1
Searched_HMMs 46136
Date Fri Mar 29 05:17:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020804.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020804hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF09459 EB_dh: Ethylbenzene d 99.6 5.3E-17 1.1E-21 149.5 2.2 127 155-305 2-154 (261)
2 TIGR03477 DMSO_red_II_gam DMSO 98.2 9.6E-06 2.1E-10 74.4 8.9 104 145-261 8-116 (205)
3 PF04478 Mid2: Mid2 like cell 97.8 4E-05 8.7E-10 68.2 5.8 53 85-149 47-99 (154)
4 PTZ00382 Variant-specific surf 97.3 0.00024 5.3E-09 58.1 3.4 38 78-115 57-94 (96)
5 PF01102 Glycophorin_A: Glycop 97.2 9.9E-05 2.1E-09 63.2 0.4 45 78-122 55-99 (122)
6 PF15102 TMEM154: TMEM154 prot 97.0 0.0024 5.1E-08 56.6 7.5 26 113-138 83-110 (146)
7 PF13908 Shisa: Wnt and FGF in 96.2 0.006 1.3E-07 53.3 4.4 31 85-115 77-107 (179)
8 PF02480 Herpes_gE: Alphaherpe 96.2 0.0016 3.4E-08 65.5 0.7 31 85-115 350-380 (439)
9 PF08693 SKG6: Transmembrane a 95.9 0.007 1.5E-07 43.5 2.8 31 84-116 8-39 (40)
10 PF12273 RCR: Chitin synthesis 95.6 0.0057 1.2E-07 51.3 1.5 33 98-131 9-41 (130)
11 PF03302 VSP: Giardia variant- 94.9 0.022 4.8E-07 56.3 3.4 38 79-116 359-396 (397)
12 PF04478 Mid2: Mid2 like cell 94.6 0.044 9.6E-07 49.1 4.2 47 77-124 43-89 (154)
13 PF05454 DAG1: Dystroglycan (D 94.6 0.0098 2.1E-07 57.4 0.0 25 30-57 87-111 (290)
14 PF15345 TMEM51: Transmembrane 94.5 0.036 7.8E-07 52.5 3.7 40 79-122 52-91 (233)
15 PF14575 EphA2_TM: Ephrin type 94.1 0.019 4E-07 45.2 0.7 31 89-119 2-32 (75)
16 PF06697 DUF1191: Protein of u 94.1 0.043 9.4E-07 53.0 3.2 31 81-111 207-238 (278)
17 PF01299 Lamp: Lysosome-associ 93.9 0.033 7.3E-07 52.6 2.0 32 87-118 270-301 (306)
18 PF07204 Orthoreo_P10: Orthore 93.8 0.015 3.2E-07 48.8 -0.5 27 93-119 46-72 (98)
19 PF08374 Protocadherin: Protoc 93.6 0.043 9.3E-07 51.7 2.2 94 86-179 37-142 (221)
20 PF12768 Rax2: Cortical protei 93.2 0.096 2.1E-06 50.1 3.9 45 80-124 220-266 (281)
21 PF06452 DUF1083: Domain of un 93.1 0.11 2.5E-06 43.6 3.8 54 150-206 1-55 (185)
22 PF06679 DUF1180: Protein of u 92.8 0.23 4.9E-06 44.7 5.4 33 92-124 100-132 (163)
23 PF12877 DUF3827: Domain of un 92.7 0.082 1.8E-06 56.3 2.9 37 79-116 262-298 (684)
24 PF01034 Syndecan: Syndecan do 92.5 0.037 8E-07 43.4 0.1 37 89-125 11-48 (64)
25 PF13908 Shisa: Wnt and FGF in 92.0 0.14 3E-06 44.9 3.0 41 86-126 74-115 (179)
26 cd00005 CBM9 Family 9 carbohyd 91.9 0.25 5.4E-06 43.7 4.6 52 144-202 6-58 (186)
27 PF02439 Adeno_E3_CR2: Adenovi 91.9 0.1 2.2E-06 37.3 1.7 7 92-98 8-14 (38)
28 PF07213 DAP10: DAP10 membrane 91.0 0.16 3.4E-06 41.3 2.2 39 80-118 27-65 (79)
29 PF15069 FAM163: FAM163 family 89.8 0.36 7.8E-06 43.0 3.5 26 86-112 5-30 (143)
30 PF05568 ASFV_J13L: African sw 89.2 0.15 3.3E-06 46.3 0.8 27 92-118 34-60 (189)
31 PF10873 DUF2668: Protein of u 89.1 0.38 8.2E-06 43.3 3.2 32 81-112 55-87 (155)
32 PF15102 TMEM154: TMEM154 prot 88.7 0.63 1.4E-05 41.6 4.3 9 109-117 82-90 (146)
33 PF02480 Herpes_gE: Alphaherpe 86.3 0.22 4.7E-06 50.5 0.0 40 79-118 347-386 (439)
34 COG3889 Predicted solute bindi 86.2 0.74 1.6E-05 50.3 3.8 24 88-111 845-868 (872)
35 PF14610 DUF4448: Protein of u 86.0 2.4 5.3E-05 37.6 6.4 12 27-38 86-97 (189)
36 PHA03265 envelope glycoprotein 85.7 1.3 2.8E-05 44.8 5.0 12 47-58 277-288 (402)
37 PF06365 CD34_antigen: CD34/Po 85.6 1.1 2.4E-05 41.7 4.2 69 88-156 101-176 (202)
38 PF15065 NCU-G1: Lysosomal tra 85.0 0.26 5.7E-06 48.8 -0.1 36 83-118 314-350 (350)
39 TIGR01478 STEVOR variant surfa 83.6 0.58 1.3E-05 45.9 1.5 32 93-124 262-293 (295)
40 PF02009 Rifin_STEVOR: Rifin/s 83.6 0.27 5.8E-06 47.8 -0.7 19 87-105 256-274 (299)
41 PF05393 Hum_adeno_E3A: Human 83.5 0.62 1.4E-05 39.0 1.5 37 85-121 28-66 (94)
42 PLN03150 hypothetical protein; 83.0 1.2 2.5E-05 46.4 3.5 31 84-114 541-571 (623)
43 PF12191 stn_TNFRSF12A: Tumour 82.9 0.38 8.3E-06 42.2 0.0 52 84-135 75-126 (129)
44 PF01034 Syndecan: Syndecan do 82.9 0.38 8.2E-06 37.8 -0.0 31 84-114 10-40 (64)
45 PF05808 Podoplanin: Podoplani 82.5 0.4 8.7E-06 43.4 0.0 23 81-103 123-145 (162)
46 PF05083 LST1: LST-1 protein; 82.1 0.56 1.2E-05 37.8 0.7 25 94-118 1-25 (74)
47 PF05454 DAG1: Dystroglycan (D 81.6 0.45 9.9E-06 46.2 0.0 15 101-115 160-174 (290)
48 PTZ00370 STEVOR; Provisional 80.7 0.67 1.4E-05 45.5 0.8 31 94-124 259-289 (296)
49 PF06809 NPDC1: Neural prolife 79.7 6.8 0.00015 39.3 7.3 18 102-119 214-231 (341)
50 PHA03281 envelope glycoprotein 79.5 3.2 6.9E-05 44.2 5.2 33 80-112 546-579 (642)
51 PF12273 RCR: Chitin synthesis 79.0 1.5 3.2E-05 36.9 2.3 38 86-124 1-38 (130)
52 PF04906 Tweety: Tweety; Inte 78.1 1.3 2.8E-05 44.3 1.9 24 99-122 34-57 (406)
53 TIGR03785 marine_sort_HK prote 74.6 4.4 9.6E-05 42.6 4.8 63 137-204 70-136 (703)
54 PF14851 FAM176: FAM176 family 73.9 3.1 6.7E-05 37.3 3.0 68 86-167 24-91 (153)
55 PF06024 DUF912: Nucleopolyhed 72.9 2.8 6.1E-05 34.5 2.3 11 109-119 84-94 (101)
56 PHA03283 envelope glycoprotein 71.7 5.9 0.00013 41.8 4.8 26 92-117 404-431 (542)
57 PF06679 DUF1180: Protein of u 71.4 11 0.00023 34.2 5.8 33 88-120 93-125 (163)
58 PTZ00382 Variant-specific surf 70.8 6.2 0.00013 32.4 3.8 26 88-114 71-96 (96)
59 KOG3637 Vitronectin receptor, 70.4 9.2 0.0002 43.0 6.2 38 81-118 973-1010(1030)
60 PF14979 TMEM52: Transmembrane 69.8 3.1 6.8E-05 37.6 2.0 76 82-170 15-91 (154)
61 PF10577 UPF0560: Uncharacteri 69.2 3.6 7.9E-05 45.2 2.7 14 32-45 234-247 (807)
62 cd07912 Tweety_N N-terminal do 68.8 3.2 6.9E-05 42.2 2.1 19 97-115 52-70 (418)
63 KOG3514 Neurexin III-alpha [Si 68.5 11 0.00023 43.5 6.0 26 88-114 1513-1538(1591)
64 PF13584 BatD: Oxygen toleranc 66.3 11 0.00023 37.5 5.1 17 32-48 346-364 (484)
65 PF05510 Sarcoglycan_2: Sarcog 65.4 6 0.00013 40.2 3.2 28 92-119 290-317 (386)
66 PHA03292 envelope glycoprotein 64.9 18 0.0004 37.1 6.5 34 87-120 318-361 (413)
67 KOG4221 Receptor mediating net 64.3 9 0.00019 44.2 4.6 73 86-165 1059-1131(1381)
68 PF10670 DUF4198: Domain of un 64.2 11 0.00023 32.6 4.1 52 142-195 113-164 (215)
69 PF00558 Vpu: Vpu protein; In 64.2 4.7 0.0001 33.0 1.9 32 87-118 4-35 (81)
70 PF11980 DUF3481: Domain of un 64.1 10 0.00022 31.6 3.8 41 84-124 12-55 (87)
71 PF02158 Neuregulin: Neureguli 63.7 2.3 5E-05 43.3 0.0 29 86-115 9-37 (404)
72 PF00974 Rhabdo_glycop: Rhabdo 62.9 2.4 5.3E-05 43.6 0.0 14 100-113 466-479 (501)
73 PF04689 S1FA: DNA binding pro 61.6 11 0.00024 30.2 3.4 29 81-109 7-35 (69)
74 PLN00113 leucine-rich repeat r 61.5 11 0.00023 40.1 4.3 10 285-294 855-864 (968)
75 PF08693 SKG6: Transmembrane a 61.1 12 0.00026 27.1 3.2 17 86-102 15-31 (40)
76 PF08374 Protocadherin: Protoc 60.8 33 0.00071 32.8 7.0 34 77-110 31-64 (221)
77 PF15347 PAG: Phosphoprotein a 60.4 8.1 0.00018 39.6 3.2 21 104-124 33-53 (428)
78 KOG4482 Sarcoglycan complex, a 60.4 6 0.00013 40.7 2.2 27 93-119 303-329 (449)
79 KOG4433 Tweety transmembrane/c 59.9 5.6 0.00012 41.8 2.0 32 99-130 58-89 (526)
80 PF05478 Prominin: Prominin; 58.7 6 0.00013 42.6 2.1 27 87-113 92-118 (806)
81 PF03229 Alpha_GJ: Alphavirus 58.4 9.2 0.0002 33.6 2.7 18 88-105 84-101 (126)
82 KOG4818 Lysosomal-associated m 58.2 8.9 0.00019 38.8 3.0 35 86-121 325-359 (362)
83 PF05283 MGC-24: Multi-glycosy 57.3 21 0.00046 33.0 5.1 33 79-114 153-185 (186)
84 PF15330 SIT: SHP2-interacting 55.5 7 0.00015 33.0 1.5 6 130-135 47-52 (107)
85 PF15298 AJAP1_PANP_C: AJAP1/P 53.6 13 0.00028 35.2 3.0 57 90-153 104-167 (205)
86 PF01708 Gemini_mov: Geminivir 52.9 22 0.00048 29.9 4.0 11 84-94 34-44 (91)
87 PF14575 EphA2_TM: Ephrin type 52.2 11 0.00023 29.8 2.0 28 93-120 3-30 (75)
88 KOG0729 26S proteasome regulat 51.8 5.5 0.00012 40.1 0.4 23 216-239 161-185 (435)
89 PTZ00208 65 kDa invariant surf 51.6 5.8 0.00013 40.8 0.5 41 85-125 385-425 (436)
90 PHA03099 epidermal growth fact 50.8 13 0.00027 33.3 2.4 31 86-117 100-130 (139)
91 PLN03160 uncharacterized prote 49.4 25 0.00054 32.5 4.2 32 182-214 112-143 (219)
92 PF02439 Adeno_E3_CR2: Adenovi 49.4 9 0.0002 27.6 1.1 18 85-103 4-22 (38)
93 PHA03164 hypothetical protein; 48.8 11 0.00024 31.2 1.6 30 81-111 52-81 (88)
94 PHA03281 envelope glycoprotein 48.5 25 0.00053 37.9 4.5 29 78-106 549-577 (642)
95 PF14991 MLANA: Protein melan- 48.4 5.6 0.00012 34.7 -0.2 28 90-117 27-54 (118)
96 COG5178 PRP8 U5 snRNP spliceos 48.0 14 0.00031 43.0 2.8 14 262-275 380-393 (2365)
97 PF15330 SIT: SHP2-interacting 48.0 11 0.00023 31.9 1.5 19 105-123 16-34 (107)
98 PF04971 Lysis_S: Lysis protei 47.8 8.3 0.00018 30.8 0.7 36 85-121 31-66 (68)
99 PF11669 WBP-1: WW domain-bind 47.3 6.5 0.00014 32.7 0.1 14 105-118 35-48 (102)
100 KOG0196 Tyrosine kinase, EPH ( 45.8 14 0.00031 41.3 2.4 19 85-103 546-564 (996)
101 PF14914 LRRC37AB_C: LRRC37A/B 45.6 11 0.00024 34.2 1.2 31 86-116 119-150 (154)
102 PF15099 PIRT: Phosphoinositid 45.5 7.7 0.00017 34.3 0.3 14 81-94 74-87 (129)
103 PHA03291 envelope glycoprotein 45.2 30 0.00064 35.5 4.3 32 80-112 279-310 (401)
104 PTZ00045 apical membrane antig 45.2 13 0.00027 39.9 1.8 36 83-119 511-546 (595)
105 PF01561 Hanta_G2: Hantavirus 44.7 18 0.0004 37.7 2.8 26 92-118 459-484 (485)
106 TIGR03154 sulfolob_CbsA cytoch 44.5 82 0.0018 32.6 7.3 65 136-201 34-100 (465)
107 COG1566 EmrA Multidrug resista 42.1 33 0.00071 34.3 4.0 61 132-192 260-340 (352)
108 PHA03273 envelope glycoprotein 41.3 27 0.00059 36.7 3.4 11 86-96 447-457 (486)
109 PF13268 DUF4059: Protein of u 41.2 12 0.00026 30.3 0.7 30 91-120 12-41 (72)
110 PF11857 DUF3377: Domain of un 40.7 41 0.00089 27.3 3.7 32 84-115 26-57 (74)
111 PF14584 DUF4446: Protein of u 40.3 6.5 0.00014 34.8 -1.0 27 92-118 5-31 (151)
112 PF14828 Amnionless: Amnionles 40.0 40 0.00087 34.5 4.4 24 88-111 339-362 (437)
113 PF12158 DUF3592: Protein of u 39.5 49 0.0011 26.9 4.1 19 175-194 88-106 (148)
114 PRK08455 fliL flagellar basal 38.6 44 0.00096 30.3 4.0 23 179-201 87-109 (182)
115 PF02038 ATP1G1_PLM_MAT8: ATP1 38.3 11 0.00023 28.6 0.1 6 92-97 19-24 (50)
116 PF01102 Glycophorin_A: Glycop 37.7 8.7 0.00019 33.3 -0.6 42 80-122 60-102 (122)
117 KOG3884 Neural proliferation, 37.5 34 0.00074 35.2 3.4 40 84-125 294-333 (437)
118 PF12259 DUF3609: Protein of u 36.4 33 0.00071 34.4 3.1 29 88-117 299-327 (361)
119 PF13567 DUF4131: Domain of un 36.4 19 0.00042 28.6 1.2 19 146-164 76-94 (176)
120 PHA03282 envelope glycoprotein 36.3 25 0.00054 37.2 2.3 35 86-122 410-444 (540)
121 PF02124 Marek_A: Marek's dise 36.0 24 0.00051 33.3 1.9 26 85-111 184-209 (211)
122 PF04639 Baculo_E56: Baculovir 35.8 14 0.0003 36.7 0.3 24 75-99 266-289 (305)
123 TIGR03154 sulfolob_CbsA cytoch 35.6 54 0.0012 33.9 4.4 12 92-103 445-456 (465)
124 PF05545 FixQ: Cbb3-type cytoc 35.0 30 0.00066 24.8 1.9 11 108-118 26-36 (49)
125 PHA03049 IMV membrane protein; 33.5 33 0.00071 27.6 2.1 32 94-125 2-33 (68)
126 PF06040 Adeno_E3: Adenovirus 32.4 21 0.00045 31.5 0.8 29 87-115 89-123 (127)
127 PHA03286 envelope glycoprotein 32.3 14 0.00031 38.6 -0.2 28 91-118 395-423 (492)
128 PF02430 AMA-1: Apical membran 31.5 16 0.00034 38.2 0.0 32 86-117 429-460 (471)
129 PF12669 P12: Virus attachment 31.4 32 0.00069 26.1 1.6 6 113-118 21-26 (58)
130 PF00974 Rhabdo_glycop: Rhabdo 31.2 16 0.00035 37.8 0.0 14 111-124 481-494 (501)
131 PF15050 SCIMP: SCIMP protein 30.4 21 0.00045 31.7 0.5 11 102-112 23-33 (133)
132 PHA03290 envelope glycoprotein 30.1 71 0.0015 32.5 4.2 20 86-105 271-290 (357)
133 PF14991 MLANA: Protein melan- 29.7 12 0.00026 32.7 -1.0 25 92-116 25-50 (118)
134 PTZ00214 high cysteine membran 29.5 7.1 0.00015 42.7 -3.0 28 79-106 770-797 (800)
135 PF00957 Synaptobrevin: Synapt 29.3 42 0.00091 26.1 2.1 19 92-110 70-88 (89)
136 PF07215 DUF1419: Protein of u 28.8 50 0.0011 28.7 2.6 38 165-210 57-98 (111)
137 PLN03148 Blue copper-like prot 28.7 92 0.002 28.4 4.4 6 27-32 89-94 (167)
138 PF06667 PspB: Phage shock pro 28.2 36 0.00077 27.4 1.5 23 95-117 10-32 (75)
139 PF00558 Vpu: Vpu protein; In 26.9 21 0.00046 29.2 0.0 34 84-117 4-37 (81)
140 PTZ00234 variable surface prot 26.7 31 0.00068 35.5 1.2 6 86-91 365-370 (433)
141 KOG3540 Beta amyloid precursor 26.4 25 0.00053 37.5 0.4 29 83-111 544-572 (615)
142 PF11770 GAPT: GRB2-binding ad 25.8 41 0.0009 30.7 1.6 16 90-105 10-25 (158)
143 TIGR02375 pseudoazurin pseudoa 25.7 87 0.0019 26.6 3.5 77 142-227 11-89 (116)
144 KOG1094 Discoidin domain recep 25.5 31 0.00066 37.9 0.9 28 92-120 396-423 (807)
145 KOG1219 Uncharacterized conser 25.3 53 0.0011 41.3 2.7 27 86-113 3992-4018(4289)
146 PHA03270 envelope glycoprotein 25.3 25 0.00055 36.7 0.2 11 36-46 393-403 (466)
147 cd01324 cbb3_Oxidase_CcoQ Cyto 25.2 50 0.0011 24.2 1.7 18 102-119 21-38 (48)
148 PF01690 PLRV_ORF5: Potato lea 24.3 59 0.0013 34.1 2.6 13 146-158 126-139 (465)
149 KOG2052 Activin A type IB rece 23.1 61 0.0013 34.4 2.4 26 86-111 130-155 (513)
150 KOG1024 Receptor-like protein 23.1 73 0.0016 33.8 3.0 31 86-118 185-215 (563)
151 COG3115 ZipA Cell division pro 23.0 55 0.0012 32.9 2.0 15 92-106 9-23 (324)
152 PF03229 Alpha_GJ: Alphavirus 23.0 1.2E+02 0.0027 26.8 3.9 34 80-113 80-113 (126)
153 PF03494 Beta-APP: Beta-amyloi 23.0 12 0.00027 26.9 -1.7 16 83-98 22-37 (39)
154 PHA03269 envelope glycoprotein 22.6 34 0.00074 36.4 0.5 13 87-99 539-551 (566)
155 PF10265 DUF2217: Uncharacteri 22.2 49 0.0011 35.0 1.6 14 86-99 15-28 (514)
156 PF05084 GRA6: Granule antigen 21.5 89 0.0019 29.4 2.9 16 113-128 172-187 (215)
157 PRK11901 hypothetical protein; 21.5 57 0.0012 32.8 1.8 20 85-105 34-53 (327)
158 COG4218 MtrF Tetrahydromethano 21.3 49 0.0011 26.9 1.1 25 83-107 45-69 (73)
159 PF15179 Myc_target_1: Myc tar 21.2 38 0.00082 31.9 0.5 7 130-136 86-92 (197)
160 KOG3054 Uncharacterized conser 21.2 55 0.0012 32.3 1.6 24 96-121 7-30 (299)
161 PF07423 DUF1510: Protein of u 21.1 24 0.00051 33.3 -0.8 29 80-110 8-36 (217)
162 PF01299 Lamp: Lysosome-associ 21.0 29 0.00062 33.1 -0.3 27 88-115 275-301 (306)
163 PF06024 DUF912: Nucleopolyhed 20.9 2.9E+02 0.0063 22.7 5.6 29 94-122 66-94 (101)
164 PRK10905 cell division protein 20.6 64 0.0014 32.5 1.9 14 92-105 2-15 (328)
165 PF14986 DUF4514: Domain of un 20.5 73 0.0016 25.0 1.8 26 86-111 21-46 (61)
166 PF12606 RELT: Tumour necrosis 20.4 1.4E+02 0.003 22.5 3.2 30 93-122 6-35 (50)
167 PRK10884 SH3 domain-containing 20.4 78 0.0017 29.4 2.4 19 95-113 177-195 (206)
168 PF05961 Chordopox_A13L: Chord 20.2 76 0.0017 25.5 1.9 19 94-112 2-20 (68)
169 PF10577 UPF0560: Uncharacteri 20.0 38 0.00082 37.6 0.3 13 89-101 275-287 (807)
No 1
>PF09459 EB_dh: Ethylbenzene dehydrogenase; InterPro: IPR019020 This entry represents a haem-binding domain found in cytochromes b558/566 (subunit A), c-551 and c-552, as well as in members of the type-II members of the microbial dimethyl sulphoxide (DMSO) reductase family. The DMSO reductase family is a large and rapidly expanding group of enzymes found in bacteria and archaea that share a common form of molybdenum cofactor known as bis(molybdopterin guanine dinucleotide)Mo []. In addition to the molybdopterin subunit, these enzymes also contain an iron-sulphur subunit. These include two distinct but very closely related periplasmic proteins of anaerobic respiration: selenate reductase and chlorate reductase []. Other proteins containing this subunit include dimethyl sulphide dehydrogenase and ethylbenzene dehydrogenase [, , ]. One member of the DMSO reductase family is eythylbenzene dehydrogenase, which is a heterotrimer of three subunits that catalyses the anaerobic degradation of hydrocarbons (alpha, beta and gamma subunits). This entry matches the gamma subunit, whose structure is known []. The alpha subunit contains the catalytic centre as a Molybdenum cofactor-complex. This removes an electron-pair from the hydrocarbon and passes it along an electron transport system involving iron-sulphur complexes held in the beta subunit and a Haem b molecule contained in the gamma subunit. The electron-pair is then subsequently passed to an as yet unknown receiver. The enzyme is found in a variety of different bacteria.; GO: 0020037 heme binding; PDB: 2IVF_C.
Probab=99.64 E-value=5.3e-17 Score=149.46 Aligned_cols=127 Identities=32% Similarity=0.585 Sum_probs=60.5
Q ss_pred CCcccccCccccccccCCCC--CCCCCCCCeeEEEEeecCccEEEEEEecC---cee------eec--CCcccCCceeee
Q 020804 155 DDWEDIDGSEFSLLPALDPH--AEHEYKGGKMNVKALHDGHDVYFLLQVDG---EYV------YSK--GENTRCPSIALM 221 (321)
Q Consensus 155 ~dw~~i~~~~~~l~pal~~d--~~~~y~~g~~~vk~~hdg~~~ffll~v~g---~y~------~~~--~~~~~c~svalm 221 (321)
.+|++|+..+++|.|.+++. +..++....|+|||+|||++||||||.+. ++. |.+ ....-+..+|+|
T Consensus 2 ~~W~~~p~~~v~L~pg~~~~p~~~~~~~~~~v~VkAa~dg~~Iyfll~W~d~t~~~~~~p~~~~~~~~~~~~yeDk~Avm 81 (261)
T PF09459_consen 2 PDWSKAPPVEVPLYPGQSSYPEPPPKGGTIPVEVKAAHDGENIYFLLEWPDPTRSYERHPDGGWVQAGEDDYYEDKVAVM 81 (261)
T ss_dssp HHHHTS-EEEEE-EE--GGG----T-----EEEEEEEE-SSEEEEEEEEE-----S------------STT----EEEEE
T ss_pred chhccCCCeEEEECCCccCCccccCCCCcEEEEEEEEECCCeEEEEEEecCCCCCccccccccccccCCCCcCcceEEEE
Confidence 58999999999999996543 44588889999999999999999999988 233 223 567788999999
Q ss_pred eeecCCceeeecCCCCCCCCcccccccCCceeeEEEEEeccccCceecCCCCCCCCCCCCCCccccceeeeecCC-----
Q 020804 222 FQIGEDATYHNMGGCKEGIGSCTSKTCKGHEVDIMHFSIGSAIPGRLYGGNPVDNSEGNGGDRFGHLVDVYAWTP----- 296 (321)
Q Consensus 222 f~~g~~a~y~nmggc~~~~~~c~~~~c~g~evdi~hf~i~~aipgr~yg~n~~d~~~g~g~d~~g~l~d~yawnp----- 296 (321)
|.+| ++.++.+.|| ..+|...+.|+.|+.+++ ||.|-+.. |+++|++.|++
T Consensus 82 f~~g-~v~~~~~~Gc--------~~~ch~~~~~~p~~~~~~---~~ky~~~~------------g~~vdlW~Wka~r~~~ 137 (261)
T PF09459_consen 82 FSDG-DVPYFGQDGC--------WHTCHKPLRDMPAAPIGR---GRKYMGDS------------GEPVDLWHWKASRSGM 137 (261)
T ss_dssp E----------------------------ESST--T--GG-------GT-BT------------TB-EEEEEEET-----
T ss_pred eeec-cccccccccc--------cccccCCcccccCCCccc---ceeeeCCC------------CeEEEEEEeccccccc
Confidence 9999 8888865554 678999999999998887 88898874 99999999999
Q ss_pred --------cccccCCCC
Q 020804 297 --------HCRYLDGMG 305 (321)
Q Consensus 297 --------hcr~~dg~~ 305 (321)
+|||.+|.|
T Consensus 138 ~~d~~~~~~r~~~~G~g 154 (261)
T PF09459_consen 138 ADDGYVFGKRRYDAGYG 154 (261)
T ss_dssp -----------------
T ss_pred ccccccccccccccccc
Confidence 899999998
No 2
>TIGR03477 DMSO_red_II_gam DMSO reductase family type II enzyme, heme b subunit. This model represents a heme b-binding subunit, typically called the gamma subunit, of various proteins that also contain a molybdopterin subunit and an iron-sulfur protein. The group includes two distinct but very closely related periplasmic proteins of anaerobic respiration, selenate reductase and chlorate reductase. Other members of this family include dimethyl sulphide dehydrogenase and ethylbenzene dehydrogenase.
Probab=98.16 E-value=9.6e-06 Score=74.40 Aligned_cols=104 Identities=20% Similarity=0.304 Sum_probs=77.3
Q ss_pred CceeeecCCCCCcccccCccccccccCCCCCCCCCCCC--eeEEEEeecCccEEEEEEecCceeeecCC--cccCCceee
Q 020804 145 PGLITLDGHADDWEDIDGSEFSLLPALDPHAEHEYKGG--KMNVKALHDGHDVYFLLQVDGEYVYSKGE--NTRCPSIAL 220 (321)
Q Consensus 145 pg~~tldg~~~dw~~i~~~~~~l~pal~~d~~~~y~~g--~~~vk~~hdg~~~ffll~v~g~y~~~~~~--~~~c~sval 220 (321)
-|.+.+|-.+.-|+.++..+..|.|+---.+...|++- +|.|||+||++.|||+|+=+-+=+=.... +.-=-.||+
T Consensus 8 ~g~~~~dp~d~vW~~ap~~~V~l~~q~~~~pn~~~~~~~~~v~VkA~~n~~~Iyf~l~W~D~T~d~~~~~~d~F~DgvAv 87 (205)
T TIGR03477 8 GGDLPLDPDAPVWAGAPATEVPMVSAPLVHPFLADTGVIKTLDVQAARNGERLAVRLKWADETHDVNTDGTDSFVDGVAV 87 (205)
T ss_pred CCCCCCCcchhHHhcCCcEEEEeccccccccCccCCCcceEEEEEEEECCCeEEEEEEECCCCCccccccccccCcceEE
Confidence 36889999999999999999999776553233334333 79999999999999999876543111111 122246999
Q ss_pred eeeecCCc-eeeecCCCCCCCCcccccccCCceeeEEEEEec
Q 020804 221 MFQIGEDA-TYHNMGGCKEGIGSCTSKTCKGHEVDIMHFSIG 261 (321)
Q Consensus 221 mf~~g~~a-~y~nmggc~~~~~~c~~~~c~g~evdi~hf~i~ 261 (321)
+|++..+. .|.-||+ .+|.|.|-||.-.
T Consensus 88 qFP~~~~~~p~i~MG~-------------~~~pVniw~W~a~ 116 (205)
T TIGR03477 88 QFPVSRGSLPYITMGA-------------ADNPVNIWYWKAD 116 (205)
T ss_pred EcccCCCccCceecCC-------------CCCceEEEEECCC
Confidence 99999877 7888886 5789999999864
No 3
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=97.79 E-value=4e-05 Score=68.16 Aligned_cols=53 Identities=19% Similarity=0.293 Sum_probs=36.5
Q ss_pred cceEEEeehhhHHHHHHHHHHHhhheeecccCCCCCCCcccCCcccccCCCceeEEEEeeCceee
Q 020804 85 NLILLFGIGTGLLITAIISVLIICSCAFRRRNSKASPKETESGKWSCESDSEIRVLAEFKPGLIT 149 (321)
Q Consensus 85 S~iaIVGIaVG~vilLLL~VliLcLC~~Rrkkkka~~~~~~~~~~~c~~~~~~~~~a~~~pg~~t 149 (321)
++.+|||++||.++.+||++++|+|++++|+||++- -+++.+|..-|++..++
T Consensus 47 nknIVIGvVVGVGg~ill~il~lvf~~c~r~kktdf------------idSdGkvvtay~~n~~~ 99 (154)
T PF04478_consen 47 NKNIVIGVVVGVGGPILLGILALVFIFCIRRKKTDF------------IDSDGKVVTAYRSNKLT 99 (154)
T ss_pred CccEEEEEEecccHHHHHHHHHhheeEEEecccCcc------------ccCCCcEEEEEcCchHH
Confidence 457889999997776666655555555555555432 34567899999999775
No 4
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=97.27 E-value=0.00024 Score=58.05 Aligned_cols=38 Identities=13% Similarity=0.033 Sum_probs=26.7
Q ss_pred CCCCCCccceEEEeehhhHHHHHHHHHHHhhheeeccc
Q 020804 78 SNKGKHSNLILLFGIGTGLLITAIISVLIICSCAFRRR 115 (321)
Q Consensus 78 SsKkKklS~iaIVGIaVG~vilLLL~VliLcLC~~Rrk 115 (321)
+.++..++..+|+||+||+++++.+++.+|++.+++||
T Consensus 57 st~~~~ls~gaiagi~vg~~~~v~~lv~~l~w~f~~r~ 94 (96)
T PTZ00382 57 GANRSGLSTGAIAGISVAVVAVVGGLVGFLCWWFVCRG 94 (96)
T ss_pred ccCCCCcccccEEEEEeehhhHHHHHHHHHhheeEEee
Confidence 34456789999999999988766555555555555443
No 5
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=97.19 E-value=9.9e-05 Score=63.22 Aligned_cols=45 Identities=24% Similarity=0.251 Sum_probs=29.6
Q ss_pred CCCCCCccceEEEeehhhHHHHHHHHHHHhhheeecccCCCCCCC
Q 020804 78 SNKGKHSNLILLFGIGTGLLITAIISVLIICSCAFRRRNSKASPK 122 (321)
Q Consensus 78 SsKkKklS~iaIVGIaVG~vilLLL~VliLcLC~~Rrkkkka~~~ 122 (321)
..-..+++..+|++|++|.++.+++++++|.||.+|+|||.....
T Consensus 55 ~ql~h~fs~~~i~~Ii~gv~aGvIg~Illi~y~irR~~Kk~~~~~ 99 (122)
T PF01102_consen 55 SQLVHRFSEPAIIGIIFGVMAGVIGIILLISYCIRRLRKKSSSDV 99 (122)
T ss_dssp -SSSSSSS-TCHHHHHHHHHHHHHHHHHHHHHHHHHHS-------
T ss_pred cccccCccccceeehhHHHHHHHHHHHHHHHHHHHHHhccCCCCC
Confidence 334667888999999999999888887888888877666654433
No 6
>PF15102 TMEM154: TMEM154 protein family
Probab=97.04 E-value=0.0024 Score=56.64 Aligned_cols=26 Identities=27% Similarity=0.303 Sum_probs=19.4
Q ss_pred cccCCCCCCCcccCCcc--cccCCCcee
Q 020804 113 RRRNSKASPKETESGKW--SCESDSEIR 138 (321)
Q Consensus 113 Rrkkkka~~~~~~~~~~--~c~~~~~~~ 138 (321)
||||.|+.++.+.+-+. +|+-+.+-.
T Consensus 83 kRkr~K~~~ss~gsq~~~qt~e~~~Env 110 (146)
T PF15102_consen 83 KRKRTKQEPSSQGSQSALQTYELGSENV 110 (146)
T ss_pred eecccCCCCccccccccccccccCcccc
Confidence 67777887888877765 899888643
No 7
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=96.22 E-value=0.006 Score=53.33 Aligned_cols=31 Identities=16% Similarity=0.421 Sum_probs=17.3
Q ss_pred cceEEEeehhhHHHHHHHHHHHhhheeeccc
Q 020804 85 NLILLFGIGTGLLITAIISVLIICSCAFRRR 115 (321)
Q Consensus 85 S~iaIVGIaVG~vilLLL~VliLcLC~~Rrk 115 (321)
..++|+||++|++++++++++++|.|+.+.|
T Consensus 77 ~~~iivgvi~~Vi~Iv~~Iv~~~Cc~c~~~K 107 (179)
T PF13908_consen 77 ITGIIVGVICGVIAIVVLIVCFCCCCCCLYK 107 (179)
T ss_pred eeeeeeehhhHHHHHHHhHhhheeccccccc
Confidence 4566677777766655444444443444444
No 8
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=96.20 E-value=0.0016 Score=65.52 Aligned_cols=31 Identities=23% Similarity=0.391 Sum_probs=0.0
Q ss_pred cceEEEeehhhHHHHHHHHHHHhhheeeccc
Q 020804 85 NLILLFGIGTGLLITAIISVLIICSCAFRRR 115 (321)
Q Consensus 85 S~iaIVGIaVG~vilLLL~VliLcLC~~Rrk 115 (321)
...+++++++|.+++++|+++++++|.+||+
T Consensus 350 ~~~~~l~vVlgvavlivVv~viv~vc~~~rr 380 (439)
T PF02480_consen 350 RGAALLGVVLGVAVLIVVVGVIVWVCLRCRR 380 (439)
T ss_dssp -------------------------------
T ss_pred cccchHHHHHHHHHHHHHHHHHhheeeeehh
Confidence 3444444444555444444443334433333
No 9
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=95.95 E-value=0.007 Score=43.48 Aligned_cols=31 Identities=23% Similarity=0.272 Sum_probs=13.9
Q ss_pred ccceEE-EeehhhHHHHHHHHHHHhhheeecccC
Q 020804 84 SNLILL-FGIGTGLLITAIISVLIICSCAFRRRN 116 (321)
Q Consensus 84 lS~iaI-VGIaVG~vilLLL~VliLcLC~~Rrkk 116 (321)
.++.+| +|+++..++++++ ++++|+..|||+
T Consensus 8 ~~~vaIa~~VvVPV~vI~~v--l~~~l~~~~rR~ 39 (40)
T PF08693_consen 8 SNTVAIAVGVVVPVGVIIIV--LGAFLFFWYRRK 39 (40)
T ss_pred CceEEEEEEEEechHHHHHH--HHHHhheEEecc
Confidence 344444 4455555444333 334444444444
No 10
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=95.60 E-value=0.0057 Score=51.34 Aligned_cols=33 Identities=27% Similarity=0.497 Sum_probs=15.2
Q ss_pred HHHHHHHHHhhheeecccCCCCCCCcccCCcccc
Q 020804 98 ITAIISVLIICSCAFRRRNSKASPKETESGKWSC 131 (321)
Q Consensus 98 ilLLL~VliLcLC~~Rrkkkka~~~~~~~~~~~c 131 (321)
|++||+++++|+|..|||+||-..-+. -..|..
T Consensus 9 i~~i~l~~~~~~~~~rRR~r~G~~P~~-gt~w~~ 41 (130)
T PF12273_consen 9 IVAILLFLFLFYCHNRRRRRRGLQPIY-GTRWMA 41 (130)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCcC-CceecC
Confidence 344444455555555555555333222 235544
No 11
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=94.90 E-value=0.022 Score=56.32 Aligned_cols=38 Identities=13% Similarity=0.085 Sum_probs=30.4
Q ss_pred CCCCCccceEEEeehhhHHHHHHHHHHHhhheeecccC
Q 020804 79 NKGKHSNLILLFGIGTGLLITAIISVLIICSCAFRRRN 116 (321)
Q Consensus 79 sKkKklS~iaIVGIaVG~vilLLL~VliLcLC~~Rrkk 116 (321)
.++..||+.||+||+|.++||+--+|-+||+.+.-|+|
T Consensus 359 ~n~s~LstgaIaGIsvavvvvVgglvGfLcWwf~crgk 396 (397)
T PF03302_consen 359 TNKSGLSTGAIAGISVAVVVVVGGLVGFLCWWFICRGK 396 (397)
T ss_pred cccccccccceeeeeehhHHHHHHHHHHHhhheeeccc
Confidence 34578999999999999998877777777777766665
No 12
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=94.60 E-value=0.044 Score=49.12 Aligned_cols=47 Identities=19% Similarity=0.300 Sum_probs=35.4
Q ss_pred CCCCCCCccceEEEeehhhHHHHHHHHHHHhhheeecccCCCCCCCcc
Q 020804 77 TSNKGKHSNLILLFGIGTGLLITAIISVLIICSCAFRRRNSKASPKET 124 (321)
Q Consensus 77 sSsKkKklS~iaIVGIaVG~vilLLL~VliLcLC~~Rrkkkka~~~~~ 124 (321)
-++|+|..-..++|||.+..+ +++++|+++|.+++||+.==.+.+..
T Consensus 43 lS~knknIVIGvVVGVGg~il-l~il~lvf~~c~r~kktdfidSdGkv 89 (154)
T PF04478_consen 43 LSSKNKNIVIGVVVGVGGPIL-LGILALVFIFCIRRKKTDFIDSDGKV 89 (154)
T ss_pred CCcCCccEEEEEEecccHHHH-HHHHHhheeEEEecccCccccCCCcE
Confidence 456777888999999887666 55666688888888888877666553
No 13
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=94.55 E-value=0.0098 Score=57.44 Aligned_cols=25 Identities=8% Similarity=0.125 Sum_probs=0.0
Q ss_pred cccceeeceEEEEEEecCCCCCCCCCCC
Q 020804 30 FDSTLVGDYKLLNFTWFEPPAPSQAPLA 57 (321)
Q Consensus 30 lnssLfGDYkVINVTwF~P~~PSPCPt~ 57 (321)
|...+-=+|+|.+|++. +-..|-..
T Consensus 87 f~~am~pef~V~svsv~---~~G~C~~~ 111 (290)
T PF05454_consen 87 FVRAMGPEFKVKSVSVI---PIGSCQDT 111 (290)
T ss_dssp ----------------------------
T ss_pred HHHHhCCCCceeEEEEE---EeeccCCC
Confidence 44556778999999995 33566653
No 14
>PF15345 TMEM51: Transmembrane protein 51
Probab=94.54 E-value=0.036 Score=52.46 Aligned_cols=40 Identities=18% Similarity=0.323 Sum_probs=23.5
Q ss_pred CCCCCccceEEEeehhhHHHHHHHHHHHhhheeecccCCCCCCC
Q 020804 79 NKGKHSNLILLFGIGTGLLITAIISVLIICSCAFRRRNSKASPK 122 (321)
Q Consensus 79 sKkKklS~iaIVGIaVG~vilLLL~VliLcLC~~Rrkkkka~~~ 122 (321)
+.++|.+++|.|=|++|++ |+||-|||+.+.|||+++.+.
T Consensus 52 ~~ksKt~SVAyVLVG~Gv~----LLLLSICL~IR~KRr~rq~~e 91 (233)
T PF15345_consen 52 NLKSKTFSVAYVLVGSGVA----LLLLSICLSIRDKRRRRQGEE 91 (233)
T ss_pred cccceeEEEEEehhhHHHH----HHHHHHHHHHHHHHHHhhccc
Confidence 4556666666653444332 223457888877777766665
No 15
>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A ....
Probab=94.10 E-value=0.019 Score=45.20 Aligned_cols=31 Identities=23% Similarity=0.264 Sum_probs=13.3
Q ss_pred EEeehhhHHHHHHHHHHHhhheeecccCCCC
Q 020804 89 LFGIGTGLLITAIISVLIICSCAFRRRNSKA 119 (321)
Q Consensus 89 IVGIaVG~vilLLL~VliLcLC~~Rrkkkka 119 (321)
|+++++++++++|++++++++|.+|++++|+
T Consensus 2 ii~~~~~g~~~ll~~v~~~~~~~rr~~~~~~ 32 (75)
T PF14575_consen 2 IIASIIVGVLLLLVLVIIVIVCFRRCKYSKA 32 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCTT------
T ss_pred EEehHHHHHHHHHHhheeEEEEEeeEcCCCC
Confidence 4445555555555554555555544444443
No 16
>PF06697 DUF1191: Protein of unknown function (DUF1191); InterPro: IPR010605 This family contains hypothetical plant proteins of unknown function.
Probab=94.07 E-value=0.043 Score=53.01 Aligned_cols=31 Identities=19% Similarity=0.319 Sum_probs=16.7
Q ss_pred CCCccceEE-EeehhhHHHHHHHHHHHhhhee
Q 020804 81 GKHSNLILL-FGIGTGLLITAIISVLIICSCA 111 (321)
Q Consensus 81 kKklS~iaI-VGIaVG~vilLLL~VliLcLC~ 111 (321)
+++.+.|.| +|.+.|.+++.||.++++|+.+
T Consensus 207 ~~~~~~W~iv~g~~~G~~~L~ll~~lv~~~vr 238 (278)
T PF06697_consen 207 RKRSWWWKIVVGVVGGVVLLGLLSLLVAMLVR 238 (278)
T ss_pred CCcceeEEEEEEehHHHHHHHHHHHHHHhhhh
Confidence 556666664 5555666655555444444433
No 17
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=93.86 E-value=0.033 Score=52.60 Aligned_cols=32 Identities=22% Similarity=0.317 Sum_probs=23.1
Q ss_pred eEEEeehhhHHHHHHHHHHHhhheeecccCCC
Q 020804 87 ILLFGIGTGLLITAIISVLIICSCAFRRRNSK 118 (321)
Q Consensus 87 iaIVGIaVG~vilLLL~VliLcLC~~Rrkkkk 118 (321)
-.||-|+||+++++||+|++|.++..|||+++
T Consensus 270 ~~~vPIaVG~~La~lvlivLiaYli~Rrr~~~ 301 (306)
T PF01299_consen 270 SDLVPIAVGAALAGLVLIVLIAYLIGRRRSRA 301 (306)
T ss_pred cchHHHHHHHHHHHHHHHHHHhheeEeccccc
Confidence 35677999999877777777777765555544
No 18
>PF07204 Orthoreo_P10: Orthoreovirus membrane fusion protein p10; InterPro: IPR009854 This family consists of several Orthoreovirus membrane fusion protein p10 sequences. p10 is thought to be a multifunctional protein that plays a key role in virus-host interaction [].
Probab=93.77 E-value=0.015 Score=48.80 Aligned_cols=27 Identities=15% Similarity=0.362 Sum_probs=15.3
Q ss_pred hhhHHHHHHHHHHHhhheeecccCCCC
Q 020804 93 GTGLLITAIISVLIICSCAFRRRNSKA 119 (321)
Q Consensus 93 aVG~vilLLL~VliLcLC~~Rrkkkka 119 (321)
+.|+++++||+|+.+++||+.|.|..+
T Consensus 46 A~GGG~iLilIii~Lv~CC~~K~K~~~ 72 (98)
T PF07204_consen 46 AAGGGLILILIIIALVCCCRAKHKTSA 72 (98)
T ss_pred hccchhhhHHHHHHHHHHhhhhhhhHh
Confidence 445555666665666666655554333
No 19
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=93.62 E-value=0.043 Score=51.65 Aligned_cols=94 Identities=13% Similarity=0.268 Sum_probs=52.1
Q ss_pred ceEEEeehhhHHHHHHHHHHHhhheeec-ccCCCCCCC-cccCCcccccCC--Cce--------eEEEEeeCceeeecCC
Q 020804 86 LILLFGIGTGLLITAIISVLIICSCAFR-RRNSKASPK-ETESGKWSCESD--SEI--------RVLAEFKPGLITLDGH 153 (321)
Q Consensus 86 ~iaIVGIaVG~vilLLL~VliLcLC~~R-rkkkka~~~-~~~~~~~~c~~~--~~~--------~~~a~~~pg~~tldg~ 153 (321)
..++|||++|++.++||+++..+++++| +..++...+ -+|..||-=-.. .+. +-..---=+.+|+...
T Consensus 37 ~~I~iaiVAG~~tVILVI~i~v~vR~CRq~~~k~g~QagKqe~~e~~tPn~~nkq~k~kk~kK~kspk~l~ln~vtie~~ 116 (221)
T PF08374_consen 37 VKIMIAIVAGIMTVILVIFIVVLVRYCRQSPHKKGYQAGKQENSEWVTPNQENKQKKKKKKKKKKSPKPLLLNFVTIEES 116 (221)
T ss_pred eeeeeeeecchhhhHHHHHHHHHHHHHhhccccchhhhcccccccccCCCccchhhcccccccccCCccccccccccccC
Confidence 5567788899888888777766666344 444444443 344667722111 111 1111111256788898
Q ss_pred CCCcccccCccccccccCCCCCCCCC
Q 020804 154 ADDWEDIDGSEFSLLPALDPHAEHEY 179 (321)
Q Consensus 154 ~~dw~~i~~~~~~l~pal~~d~~~~y 179 (321)
-.||.+-++.+..|--.+..|.-..|
T Consensus 117 k~d~~~~~~~~~~~~L~~~~~~~~~~ 142 (221)
T PF08374_consen 117 KPDDADNDQKSVTFDLELEEDSMGKY 142 (221)
T ss_pred CcCccccccccceeccccCCCCcccc
Confidence 89998777766544334443333333
No 20
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=93.19 E-value=0.096 Score=50.06 Aligned_cols=45 Identities=20% Similarity=0.206 Sum_probs=28.2
Q ss_pred CCCCccceEEEeehhhHH--HHHHHHHHHhhheeecccCCCCCCCcc
Q 020804 80 KGKHSNLILLFGIGTGLL--ITAIISVLIICSCAFRRRNSKASPKET 124 (321)
Q Consensus 80 KkKklS~iaIVGIaVG~v--ilLLL~VliLcLC~~Rrkkkka~~~~~ 124 (321)
++||+++..||.|..+.+ +++||.++-|.+.+.||||.+.++..+
T Consensus 220 ~~~~l~~G~VVlIslAiALG~v~ll~l~Gii~~~~~r~~~~~~~~p~ 266 (281)
T PF12768_consen 220 GGKKLSRGFVVLISLAIALGTVFLLVLIGIILAYIRRRRQGYVPAPT 266 (281)
T ss_pred ccccccceEEEEEehHHHHHHHHHHHHHHHHHHHHHhhhccCcCCCc
Confidence 457887777765555443 355555566666666777777776644
No 21
>PF06452 DUF1083: Domain of unknown function (DUF1083); InterPro: IPR010502 This entry represents the family 9 carbohydrate-binding module (CBD9), which exhibit an immunoglobulin-like beta-sandwich fold, with an additional beta-strand at the N terminus []. Bacterial extracellular cellulases and hemicellulases are involved in the hydrolysis of the major structural polysaccharides of plant cell walls. These are usually modular enzymes that contain catalytic and non-catalytic domains. The CBD9 domain binds to cellulose, xylan, as well as to a range of soluble di- and mono-saccharides, and is found in cellulose- and xylan-degrading enzymes, such as endo-1,4-beta-xylanase (3.2.1.8 from EC) [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0030246 carbohydrate binding, 0016052 carbohydrate catabolic process; PDB: 1I82_A 1I8A_A 1I8U_A.
Probab=93.09 E-value=0.11 Score=43.61 Aligned_cols=54 Identities=19% Similarity=0.387 Sum_probs=34.1
Q ss_pred ecCCCC-CcccccCccccccccCCCCCCCCCCCCeeEEEEeecCccEEEEEEecCcee
Q 020804 150 LDGHAD-DWEDIDGSEFSLLPALDPHAEHEYKGGKMNVKALHDGHDVYFLLQVDGEYV 206 (321)
Q Consensus 150 ldg~~~-dw~~i~~~~~~l~pal~~d~~~~y~~g~~~vk~~hdg~~~ffll~v~g~y~ 206 (321)
|||..+ .|+..+ .+.+.....+..... +.=+.+||+++|.+.+||+++|--+.-
T Consensus 1 IDG~~d~~W~~a~--~~~~~~~~~~~~~~~-~~~s~~~~~~wD~~~LY~~~~v~D~~~ 55 (185)
T PF06452_consen 1 IDGKLDAEWKGAP--PITIFYQWWGSDWSG-EDLSTRVRLLWDDENLYFAFEVTDDTL 55 (185)
T ss_dssp SSSS--GGGGGS---EEE--EEEES-T--T-TS-EEEEEEEE-SSEEEEEEEEE-SS-
T ss_pred CCCcccchhcCCc--eEeeeeeecccccCC-CCccEEEEEEEeCCeEEEEEEEECCcc
Confidence 699992 499998 445555555554444 667899999999999999999987773
No 22
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=92.77 E-value=0.23 Score=44.73 Aligned_cols=33 Identities=21% Similarity=0.086 Sum_probs=15.7
Q ss_pred ehhhHHHHHHHHHHHhhheeecccCCCCCCCcc
Q 020804 92 IGTGLLITAIISVLIICSCAFRRRNSKASPKET 124 (321)
Q Consensus 92 IaVG~vilLLL~VliLcLC~~Rrkkkka~~~~~ 124 (321)
+++|..+++++++++-.+..+||+||.+.|+=.
T Consensus 100 Vl~g~s~l~i~yfvir~~R~r~~~rktRkYgvl 132 (163)
T PF06679_consen 100 VLVGLSALAILYFVIRTFRLRRRNRKTRKYGVL 132 (163)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccccceeeccc
Confidence 344444455555555544443434443555433
No 23
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=92.72 E-value=0.082 Score=56.28 Aligned_cols=37 Identities=19% Similarity=0.333 Sum_probs=23.2
Q ss_pred CCCCCccceEEEeehhhHHHHHHHHHHHhhheeecccC
Q 020804 79 NKGKHSNLILLFGIGTGLLITAIISVLIICSCAFRRRN 116 (321)
Q Consensus 79 sKkKklS~iaIVGIaVG~vilLLL~VliLcLC~~Rrkk 116 (321)
.+....|+|+|||+++-.++++| +|+||++|++|++|
T Consensus 262 ~~s~~~NlWII~gVlvPv~vV~~-Iiiil~~~LCRk~K 298 (684)
T PF12877_consen 262 AKSPPNNLWIIAGVLVPVLVVLL-IIIILYWKLCRKNK 298 (684)
T ss_pred CCCCCCCeEEEehHhHHHHHHHH-HHHHHHHHHhcccc
Confidence 35566789999998766665444 44555555555443
No 24
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=92.52 E-value=0.037 Score=43.37 Aligned_cols=37 Identities=22% Similarity=0.353 Sum_probs=1.9
Q ss_pred EEeehhhHHHHHHHHHHHhhheeec-ccCCCCCCCccc
Q 020804 89 LFGIGTGLLITAIISVLIICSCAFR-RRNSKASPKETE 125 (321)
Q Consensus 89 IVGIaVG~vilLLL~VliLcLC~~R-rkkkka~~~~~~ 125 (321)
++|+++|+++.+++++++|.|+..| |||-.-+++-.|
T Consensus 11 laavIaG~Vvgll~ailLIlf~iyR~rkkdEGSY~l~e 48 (64)
T PF01034_consen 11 LAAVIAGGVVGLLFAILLILFLIYRMRKKDEGSYDLDE 48 (64)
T ss_dssp --------------------------S------SS--S
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCCC
Confidence 3455555555444443433333333 444444554444
No 25
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=92.03 E-value=0.14 Score=44.90 Aligned_cols=41 Identities=24% Similarity=0.401 Sum_probs=29.4
Q ss_pred ceEEEeehhhHHH-HHHHHHHHhhheeecccCCCCCCCcccC
Q 020804 86 LILLFGIGTGLLI-TAIISVLIICSCAFRRRNSKASPKETES 126 (321)
Q Consensus 86 ~iaIVGIaVG~vi-lLLL~VliLcLC~~Rrkkkka~~~~~~~ 126 (321)
+.++++|++|+++ +++|+++++|+|+.+-.+.|+....++.
T Consensus 74 ~~~~~~iivgvi~~Vi~Iv~~Iv~~~Cc~c~~~K~~~~~~~~ 115 (179)
T PF13908_consen 74 IYFITGIIVGVICGVIAIVVLIVCFCCCCCCLYKKCRSQRPN 115 (179)
T ss_pred ccceeeeeeehhhHHHHHHHhHhhheeccccccccccCcccc
Confidence 5678889999988 4445555667777788888876555553
No 26
>cd00005 CBM9 Family 9 carbohydrate-binding module (CBM), plays a role in microbial degradation of cellulose and hemicellulose found in plants; previously called cellulose-binding domain; the binding sites of the CBMs for which structures have been determined are of two general types: flat surfaces comprising predominantly aromatic residues tryptophan and tyrosine and extended shallow grooves; this domain frequently occurs in tandem.
Probab=91.92 E-value=0.25 Score=43.71 Aligned_cols=52 Identities=29% Similarity=0.512 Sum_probs=38.4
Q ss_pred eCceeeecCCCCC-cccccCccccccccCCCCCCCCCCCCeeEEEEeecCccEEEEEEec
Q 020804 144 KPGLITLDGHADD-WEDIDGSEFSLLPALDPHAEHEYKGGKMNVKALHDGHDVYFLLQVD 202 (321)
Q Consensus 144 ~pg~~tldg~~~d-w~~i~~~~~~l~pal~~d~~~~y~~g~~~vk~~hdg~~~ffll~v~ 202 (321)
..|.|+|||..++ |+..+-..- +-...|. ++=+-+||+++|...+|++.+|-
T Consensus 6 ~~~~p~IDG~~de~W~~a~~~~~--~~~~~~~-----~~~~t~~k~lwDd~~LYv~~~v~ 58 (186)
T cd00005 6 KYGTPVIDGQVDDIWKKAKPLET--NTYVEGT-----SGATATVRVLWDEKNLYVLAEVK 58 (186)
T ss_pred ccCCCeecCccchhHhhCcceee--eeEecCC-----CCcceEEEEEEcCCcEEEEEEEE
Confidence 4678999999999 998765432 1122332 33568999999999999999964
No 27
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=91.86 E-value=0.1 Score=37.33 Aligned_cols=7 Identities=14% Similarity=0.320 Sum_probs=2.6
Q ss_pred ehhhHHH
Q 020804 92 IGTGLLI 98 (321)
Q Consensus 92 IaVG~vi 98 (321)
|++|.++
T Consensus 8 IIv~V~v 14 (38)
T PF02439_consen 8 IIVAVVV 14 (38)
T ss_pred HHHHHHH
Confidence 3333333
No 28
>PF07213 DAP10: DAP10 membrane protein; InterPro: IPR009861 This family consists of several mammalian DAP10 membrane proteins. In activated mouse natural killer (NK) cells, the NKG2D receptor associates with two intracellular adaptors, DAP10 and DAP12, which trigger phosphatidyl inositol 3 kinase (PI3K) and Syk family protein tyrosine kinases, respectively. It has been suggested that the DAP10-PI3K pathway is sufficient to initiate NKG2D-mediated killing of target cells [].
Probab=91.01 E-value=0.16 Score=41.34 Aligned_cols=39 Identities=26% Similarity=0.275 Sum_probs=29.5
Q ss_pred CCCCccceEEEeehhhHHHHHHHHHHHhhheeecccCCC
Q 020804 80 KGKHSNLILLFGIGTGLLITAIISVLIICSCAFRRRNSK 118 (321)
Q Consensus 80 KkKklS~iaIVGIaVG~vilLLL~VliLcLC~~Rrkkkk 118 (321)
.=-..+..+++||++|-+++-||+++..+.|.+.|+|++
T Consensus 27 ~C~~ls~g~LaGiV~~D~vlTLLIv~~vy~car~r~r~~ 65 (79)
T PF07213_consen 27 GCYPLSPGLLAGIVAADAVLTLLIVLVVYYCARPRRRPT 65 (79)
T ss_pred CccccCHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCc
Confidence 344567889999999999999988887777775444433
No 29
>PF15069 FAM163: FAM163 family
Probab=89.79 E-value=0.36 Score=42.99 Aligned_cols=26 Identities=19% Similarity=0.402 Sum_probs=14.9
Q ss_pred ceEEEeehhhHHHHHHHHHHHhhheee
Q 020804 86 LILLFGIGTGLLITAIISVLIICSCAF 112 (321)
Q Consensus 86 ~iaIVGIaVG~vilLLL~VliLcLC~~ 112 (321)
+++|.|.++..+|||+|+ ++||.|++
T Consensus 5 TvVItGgILAtVILLcII-aVLCYCRL 30 (143)
T PF15069_consen 5 TVVITGGILATVILLCII-AVLCYCRL 30 (143)
T ss_pred eEEEechHHHHHHHHHHH-HHHHHHhh
Confidence 556666555555444444 56777763
No 30
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=89.22 E-value=0.15 Score=46.30 Aligned_cols=27 Identities=22% Similarity=0.517 Sum_probs=18.8
Q ss_pred ehhhHHHHHHHHHHHhhheeecccCCC
Q 020804 92 IGTGLLITAIISVLIICSCAFRRRNSK 118 (321)
Q Consensus 92 IaVG~vilLLL~VliLcLC~~Rrkkkk 118 (321)
|.++.+++++++++++.||-+||||+-
T Consensus 34 ILiaIvVliiiiivli~lcssRKkKaa 60 (189)
T PF05568_consen 34 ILIAIVVLIIIIIVLIYLCSSRKKKAA 60 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 677888777777777777775544443
No 31
>PF10873 DUF2668: Protein of unknown function (DUF2668); InterPro: IPR022640 Members in this family of proteins are annotated as cysteine and tyrosine-rich protein 1, however currently no function is known [].
Probab=89.08 E-value=0.38 Score=43.30 Aligned_cols=32 Identities=22% Similarity=0.401 Sum_probs=22.4
Q ss_pred CCCccceEEEeehhhHHHHHHHHH-HHhhheee
Q 020804 81 GKHSNLILLFGIGTGLLITAIISV-LIICSCAF 112 (321)
Q Consensus 81 kKklS~iaIVGIaVG~vilLLL~V-liLcLC~~ 112 (321)
..-++..||.||+.|.++++.++. +.||+|..
T Consensus 55 ~~~lsgtAIaGIVfgiVfimgvva~i~icvCmc 87 (155)
T PF10873_consen 55 GDVLSGTAIAGIVFGIVFIMGVVAGIAICVCMC 87 (155)
T ss_pred ccccccceeeeeehhhHHHHHHHHHHHHHHhhh
Confidence 445679999999999998766553 34455544
No 32
>PF15102 TMEM154: TMEM154 protein family
Probab=88.68 E-value=0.63 Score=41.55 Aligned_cols=9 Identities=11% Similarity=-0.016 Sum_probs=3.9
Q ss_pred heeecccCC
Q 020804 109 SCAFRRRNS 117 (321)
Q Consensus 109 LC~~Rrkkk 117 (321)
.+++|.|.+
T Consensus 82 ~kRkr~K~~ 90 (146)
T PF15102_consen 82 YKRKRTKQE 90 (146)
T ss_pred EeecccCCC
Confidence 344444443
No 33
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=86.34 E-value=0.22 Score=50.47 Aligned_cols=40 Identities=18% Similarity=0.209 Sum_probs=0.0
Q ss_pred CCCCCccceEEEeehhhHHHHHHHHHHHhhheeecccCCC
Q 020804 79 NKGKHSNLILLFGIGTGLLITAIISVLIICSCAFRRRNSK 118 (321)
Q Consensus 79 sKkKklS~iaIVGIaVG~vilLLL~VliLcLC~~Rrkkkk 118 (321)
...+....+++|.+++++++++++++++.+.|++||++++
T Consensus 347 ~~~~~~~~l~vVlgvavlivVv~viv~vc~~~rrrR~~~~ 386 (439)
T PF02480_consen 347 RTSRGAALLGVVLGVAVLIVVVGVIVWVCLRCRRRRRQRD 386 (439)
T ss_dssp ----------------------------------------
T ss_pred CCCcccchHHHHHHHHHHHHHHHHHhheeeeehhcccccc
Confidence 3444454444443455555566666677778888877776
No 34
>COG3889 Predicted solute binding protein [General function prediction only]
Probab=86.17 E-value=0.74 Score=50.33 Aligned_cols=24 Identities=8% Similarity=-0.139 Sum_probs=10.1
Q ss_pred EEEeehhhHHHHHHHHHHHhhhee
Q 020804 88 LLFGIGTGLLITAIISVLIICSCA 111 (321)
Q Consensus 88 aIVGIaVG~vilLLL~VliLcLC~ 111 (321)
...|.+.|.++++++++.+-+|++
T Consensus 845 tt~~~i~g~i~iiv~LaAla~lLr 868 (872)
T COG3889 845 TTGGGICGPIVIIVGLAALALLLR 868 (872)
T ss_pred ccccccchHHHHHHHHHHHHHHHH
Confidence 344455555543333333333333
No 35
>PF14610 DUF4448: Protein of unknown function (DUF4448)
Probab=86.04 E-value=2.4 Score=37.60 Aligned_cols=12 Identities=8% Similarity=0.086 Sum_probs=7.2
Q ss_pred eeecccceeece
Q 020804 27 KVHFDSTLVGDY 38 (321)
Q Consensus 27 KVqlnssLfGDY 38 (321)
.+++++..+.+=
T Consensus 86 ~~~i~~~wl~~~ 97 (189)
T PF14610_consen 86 PWTIDPSWLNGE 97 (189)
T ss_pred EEEECHHHhCCC
Confidence 356666666644
No 36
>PHA03265 envelope glycoprotein D; Provisional
Probab=85.71 E-value=1.3 Score=44.84 Aligned_cols=12 Identities=25% Similarity=0.443 Sum_probs=6.6
Q ss_pred CCCCCCCCCCCC
Q 020804 47 EPPAPSQAPLAS 58 (321)
Q Consensus 47 ~P~~PSPCPt~s 58 (321)
+|++|.--|++.
T Consensus 277 ~P~~~~~~~~~~ 288 (402)
T PHA03265 277 RPVPPDNHPGFD 288 (402)
T ss_pred CCCCCCCCCCcc
Confidence 456665555544
No 37
>PF06365 CD34_antigen: CD34/Podocalyxin family; InterPro: IPR013836 This family consists of several mammalian CD34 antigen proteins. The CD34 antigen is a human leukocyte membrane protein expressed specifically by lymphohematopoietic progenitor cells. CD34 is a phosphoprotein. Activation of protein kinase C (PKC) has been found to enhance CD34 phosphorylation [, ]. This family contains several eukaryotic podocalyxin proteins. Podocalyxin is a major membrane protein of the glomerular epithelium and is thought to be involved in maintenance of the architecture of the foot processes and filtration slits characteristic of this unique epithelium by virtue of its high negative charge. Podocalyxin functions as an anti-adhesin that maintains an open filtration pathway between neighbouring foot processes in the glomerular epithelium by charge repulsion [].
Probab=85.56 E-value=1.1 Score=41.67 Aligned_cols=69 Identities=19% Similarity=0.160 Sum_probs=38.1
Q ss_pred EEEeehhhH-HHHHHHHHHHhhheeecccCCCCCCCcccCCccc---ccCCCce---eEEEEeeCceeeecCCCCC
Q 020804 88 LLFGIGTGL-LITAIISVLIICSCAFRRRNSKASPKETESGKWS---CESDSEI---RVLAEFKPGLITLDGHADD 156 (321)
Q Consensus 88 aIVGIaVG~-vilLLL~VliLcLC~~Rrkkkka~~~~~~~~~~~---c~~~~~~---~~~a~~~pg~~tldg~~~d 156 (321)
++|+|++-+ +++|+++++.+++|..||..|+.-..++|+-... |-++-.. -.+.|-+-=...|+|-+.|
T Consensus 101 ~lI~lv~~g~~lLla~~~~~~Y~~~~Rrs~~~~~~rl~Ee~~~vEng~h~n~~l~v~~~~~E~qeK~~~~Ng~~~e 176 (202)
T PF06365_consen 101 TLIALVTSGSFLLLAILLGAGYCCHQRRSWSKKGQRLGEELYTVENGYHDNPTLSVAESQPEMQEKKPSLNGEAQE 176 (202)
T ss_pred EEEehHHhhHHHHHHHHHHHHHHhhhhccCCcchhhhccCceecccCccCCcccccCCCCcccccccccccCCccc
Confidence 555565544 4444444444455555666667677777665443 3334333 3444544333888888876
No 38
>PF15065 NCU-G1: Lysosomal transcription factor, NCU-G1
Probab=84.98 E-value=0.26 Score=48.83 Aligned_cols=36 Identities=19% Similarity=0.306 Sum_probs=22.0
Q ss_pred CccceEEEeehhhHHH-HHHHHHHHhhheeecccCCC
Q 020804 83 HSNLILLFGIGTGLLI-TAIISVLIICSCAFRRRNSK 118 (321)
Q Consensus 83 klS~iaIVGIaVG~vi-lLLL~VliLcLC~~Rrkkkk 118 (321)
++|..+|+-|++|-++ ++++++-.|++|.+|+|+||
T Consensus 314 ~~S~lvi~i~~vgLG~P~l~li~Ggl~v~~~r~r~~~ 350 (350)
T PF15065_consen 314 SFSPLVIMIMAVGLGVPLLLLILGGLYVCLRRRRKRK 350 (350)
T ss_pred chhHHHHHHHHHHhhHHHHHHHHhhheEEEeccccCC
Confidence 3445555446666666 44455567777777776665
No 39
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=83.58 E-value=0.58 Score=45.85 Aligned_cols=32 Identities=28% Similarity=0.355 Sum_probs=24.0
Q ss_pred hhhHHHHHHHHHHHhhheeecccCCCCCCCcc
Q 020804 93 GTGLLITAIISVLIICSCAFRRRNSKASPKET 124 (321)
Q Consensus 93 aVG~vilLLL~VliLcLC~~Rrkkkka~~~~~ 124 (321)
.+.++|+++|.|++|.|-.|-.||||.+-.||
T Consensus 262 giaalvllil~vvliiLYiWlyrrRK~swkhe 293 (295)
T TIGR01478 262 GIAALVLIILTVVLIILYIWLYRRRKKSWKHE 293 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Confidence 34556677777777777777788888888886
No 40
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=83.58 E-value=0.27 Score=47.81 Aligned_cols=19 Identities=21% Similarity=0.317 Sum_probs=9.5
Q ss_pred eEEEeehhhHHHHHHHHHH
Q 020804 87 ILLFGIGTGLLITAIISVL 105 (321)
Q Consensus 87 iaIVGIaVG~vilLLL~Vl 105 (321)
.+|++.++..++++||+|+
T Consensus 256 t~I~aSiiaIliIVLIMvI 274 (299)
T PF02009_consen 256 TAIIASIIAILIIVLIMVI 274 (299)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455555555554444433
No 41
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=83.49 E-value=0.62 Score=38.98 Aligned_cols=37 Identities=19% Similarity=0.204 Sum_probs=17.1
Q ss_pred cceEEEeehhhHHHHHHHHH--HHhhheeecccCCCCCC
Q 020804 85 NLILLFGIGTGLLITAIISV--LIICSCAFRRRNSKASP 121 (321)
Q Consensus 85 S~iaIVGIaVG~vilLLL~V--liLcLC~~Rrkkkka~~ 121 (321)
+.+.-+|+-.+.+++++|++ +|+..|++|||.||--|
T Consensus 28 n~~~~Lgm~~lvI~~iFil~VilwfvCC~kRkrsRrPIY 66 (94)
T PF05393_consen 28 NNWPNLGMWFLVICGIFILLVILWFVCCKKRKRSRRPIY 66 (94)
T ss_pred CCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhccCCcc
Confidence 34444555555555443333 34444444455444433
No 42
>PLN03150 hypothetical protein; Provisional
Probab=83.05 E-value=1.2 Score=46.35 Aligned_cols=31 Identities=19% Similarity=0.186 Sum_probs=18.3
Q ss_pred ccceEEEeehhhHHHHHHHHHHHhhheeecc
Q 020804 84 SNLILLFGIGTGLLITAIISVLIICSCAFRR 114 (321)
Q Consensus 84 lS~iaIVGIaVG~vilLLL~VliLcLC~~Rr 114 (321)
.+...++++++|++++++++++.+++|++||
T Consensus 541 ~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~r 571 (623)
T PLN03150 541 LSVGAKIGIAFGVSVAFLFLVICAMCWWKRR 571 (623)
T ss_pred CCCceEEEEEhHHHHHHHHHHHHHhhheeeh
Confidence 3456677788888876555544444444333
No 43
>PF12191 stn_TNFRSF12A: Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain; InterPro: IPR022316 The tumour necrosis factor (TNF) receptor (TNFR) superfamily comprises more than 20 type-I transmembrane proteins. Family members are defined based on similarity in their extracellular domain - a region that contains many cysteine residues arranged in a specific repetitive pattern []. The cysteines allow formation of an extended rod-like structure, responsible for ligand binding []. Upon receptor activation, different intracellular signalling complexes are assembled for different members of the TNFR superfamily, depending on their intracellular domains and sequences []. Activation of TNFRs can therefore induce a range of disparate effects, including cell proliferation, differentiation, survival, or apoptotic cell death, depending upon the receptor involved []. TNFRs are widely distributed and play important roles in many crucial biological processes, such as lymphoid and neuronal development, innate and adaptive immunity, and maintenance of cellular homeostasis []. Drugs that manipulate their signalling have potential roles in the prevention and treatment of many diseases, such as viral infections, coronary heart disease, transplant rejection, and immune disease []. TNF receptor 12 (also known as TWEAK receptor, and fibroblast growth factor-inducible-14 (Fn14)) has been implicated in endothelial cell growth and migration []. The receptor may also play a role in cell-matrix interactions [].; PDB: 2KN0_A 2RPJ_A 2KMZ_A 2EQP_A.
Probab=82.89 E-value=0.38 Score=42.23 Aligned_cols=52 Identities=13% Similarity=0.017 Sum_probs=2.5
Q ss_pred ccceEEEeehhhHHHHHHHHHHHhhheeecccCCCCCCCcccCCcccccCCC
Q 020804 84 SNLILLFGIGTGLLITAIISVLIICSCAFRRRNSKASPKETESGKWSCESDS 135 (321)
Q Consensus 84 lS~iaIVGIaVG~vilLLL~VliLcLC~~Rrkkkka~~~~~~~~~~~c~~~~ 135 (321)
...+++|+-.++++++++.++..+...++.|+|+|=.+--||-|.-.|.+-.
T Consensus 75 ~~l~~pi~~sal~v~lVl~llsg~lv~rrcrrr~~~ttPIeeTgg~~~~~~~ 126 (129)
T PF12191_consen 75 FPLLWPILGSALSVVLVLALLSGFLVWRRCRRREKFTTPIEETGGEGCPGVA 126 (129)
T ss_dssp SSSS------------------------------------------------
T ss_pred cceehhhhhhHHHHHHHHHHHHHHHHHhhhhccccCCCcccccCCCCCccee
Confidence 5567777677777765555544444445456666666677777777887654
No 44
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=82.86 E-value=0.38 Score=37.81 Aligned_cols=31 Identities=16% Similarity=0.236 Sum_probs=0.9
Q ss_pred ccceEEEeehhhHHHHHHHHHHHhhheeecc
Q 020804 84 SNLILLFGIGTGLLITAIISVLIICSCAFRR 114 (321)
Q Consensus 84 lS~iaIVGIaVG~vilLLL~VliLcLC~~Rr 114 (321)
.-..+|+|+++|.+++++|+++++.=+++|.
T Consensus 10 vlaavIaG~Vvgll~ailLIlf~iyR~rkkd 40 (64)
T PF01034_consen 10 VLAAVIAGGVVGLLFAILLILFLIYRMRKKD 40 (64)
T ss_dssp ---------------------------S---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3467788999999988888877777778873
No 45
>PF05808 Podoplanin: Podoplanin; InterPro: IPR008783 This family consists of several mammalian podoplanin-like proteins which are thought to control specifically the unique shape of podocytes [].; GO: 0016021 integral to membrane; PDB: 3IET_X.
Probab=82.50 E-value=0.4 Score=43.44 Aligned_cols=23 Identities=22% Similarity=0.251 Sum_probs=0.0
Q ss_pred CCCccceEEEeehhhHHHHHHHH
Q 020804 81 GKHSNLILLFGIGTGLLITAIIS 103 (321)
Q Consensus 81 kKklS~iaIVGIaVG~vilLLL~ 103 (321)
+..++++++|||+||.++.+.++
T Consensus 123 k~GL~T~tLVGIIVGVLlaIG~i 145 (162)
T PF05808_consen 123 KDGLSTVTLVGIIVGVLLAIGFI 145 (162)
T ss_dssp -----------------------
T ss_pred cCCcceeeeeeehhhHHHHHHHH
Confidence 77889999999999999844444
No 46
>PF05083 LST1: LST-1 protein; InterPro: IPR007775 B144/LST1 is a gene encoded in the human major histocompatibility complex that produces multiple forms of alternatively spliced mRNA and encodes peptides fewer than 100 amino acids in length. B144/LST1 is strongly expressed in dendritic cells. Transfection of B144/LST1 into a variety of cells induces morphologic changes including the production of long, thin filopodia []. A possible role in modulating immune responses. Induces morphological changes including production of filopodia and microspikes when overexpressed in a variety of cell types and may be involved in dendritic cell maturation. Isoform 1 and isoform 2 have an inhibitory effect on lymphocyte proliferation [, ]. ; GO: 0000902 cell morphogenesis, 0006955 immune response, 0016020 membrane
Probab=82.13 E-value=0.56 Score=37.80 Aligned_cols=25 Identities=28% Similarity=0.558 Sum_probs=19.6
Q ss_pred hhHHHHHHHHHHHhhheeecccCCC
Q 020804 94 TGLLITAIISVLIICSCAFRRRNSK 118 (321)
Q Consensus 94 VG~vilLLL~VliLcLC~~Rrkkkk 118 (321)
+|++.++.|.++.+|||.+.||+++
T Consensus 1 lggllll~vvll~~clC~lsrRvkr 25 (74)
T PF05083_consen 1 LGGLLLLAVVLLSACLCRLSRRVKR 25 (74)
T ss_pred CcchhhHHHHHHHHHHHHHHhhhhh
Confidence 3677778888889999999777664
No 47
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=81.61 E-value=0.45 Score=46.21 Aligned_cols=15 Identities=40% Similarity=0.855 Sum_probs=0.0
Q ss_pred HHHHHHhhheeeccc
Q 020804 101 IISVLIICSCAFRRR 115 (321)
Q Consensus 101 LL~VliLcLC~~Rrk 115 (321)
||+.+++|+|.+|||
T Consensus 160 LIA~iIa~icyrrkR 174 (290)
T PF05454_consen 160 LIAGIIACICYRRKR 174 (290)
T ss_dssp ---------------
T ss_pred HHHHHHHHHhhhhhh
Confidence 334344555544333
No 48
>PTZ00370 STEVOR; Provisional
Probab=80.70 E-value=0.67 Score=45.46 Aligned_cols=31 Identities=26% Similarity=0.289 Sum_probs=23.2
Q ss_pred hhHHHHHHHHHHHhhheeecccCCCCCCCcc
Q 020804 94 TGLLITAIISVLIICSCAFRRRNSKASPKET 124 (321)
Q Consensus 94 VG~vilLLL~VliLcLC~~Rrkkkka~~~~~ 124 (321)
+.++|+++|.|++|.|--|-.||||.+-.||
T Consensus 259 iaalvllil~vvliilYiwlyrrRK~swkhe 289 (296)
T PTZ00370 259 IAALVLLILAVVLIILYIWLYRRRKNSWKHE 289 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchhHHH
Confidence 3456677777777777777788888888886
No 49
>PF06809 NPDC1: Neural proliferation differentiation control-1 protein (NPDC1); InterPro: IPR009635 This family consists of several neural proliferation differentiation control-1 (NPDC1) proteins. NPDC1 plays a role in the control of neural cell proliferation and differentiation. It has been suggested that NPDC1 may be involved in the development of several secretion glands. This family also contains the C-terminal region of the Caenorhabditis elegans protein CAB-1 (Q93249 from SWISSPROT) which is known to interact with AEX-3 [].; GO: 0016021 integral to membrane
Probab=79.68 E-value=6.8 Score=39.27 Aligned_cols=18 Identities=22% Similarity=0.205 Sum_probs=9.9
Q ss_pred HHHHHhhheeecccCCCC
Q 020804 102 ISVLIICSCAFRRRNSKA 119 (321)
Q Consensus 102 L~VliLcLC~~Rrkkkka 119 (321)
|++..+|+|+.+|..|-+
T Consensus 214 liva~~cW~Rlqr~~rla 231 (341)
T PF06809_consen 214 LIVAGYCWYRLQREIRLA 231 (341)
T ss_pred HHHhhheEEEeccccccc
Confidence 333566666665555533
No 50
>PHA03281 envelope glycoprotein E; Provisional
Probab=79.53 E-value=3.2 Score=44.23 Aligned_cols=33 Identities=15% Similarity=0.170 Sum_probs=19.9
Q ss_pred CCCCccceEEEeehh-hHHHHHHHHHHHhhheee
Q 020804 80 KGKHSNLILLFGIGT-GLLITAIISVLIICSCAF 112 (321)
Q Consensus 80 KkKklS~iaIVGIaV-G~vilLLL~VliLcLC~~ 112 (321)
.+.+.+...+-++.+ |.++++|||+++..+|..
T Consensus 546 s~~~~~p~~~y~~l~~~~a~~~ll~l~~~~~c~~ 579 (642)
T PHA03281 546 SEPGTFPFKRYAAITGGFAALALLCLAIALICTA 579 (642)
T ss_pred cccCCCCeEeehhhhhhhHHHHHHHHHHHHHHHH
Confidence 344455555544444 556677777777777743
No 51
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=78.96 E-value=1.5 Score=36.87 Aligned_cols=38 Identities=16% Similarity=0.072 Sum_probs=17.8
Q ss_pred ceEEEeehhhHHHHHHHHHHHhhheeecccCCCCCCCcc
Q 020804 86 LILLFGIGTGLLITAIISVLIICSCAFRRRNSKASPKET 124 (321)
Q Consensus 86 ~iaIVGIaVG~vilLLL~VliLcLC~~Rrkkkka~~~~~ 124 (321)
+|+|++|+|..++++|++++ ++--++|||..+-.+.|.
T Consensus 1 RW~l~~iii~~i~l~~~~~~-~~~rRR~r~G~~P~~gt~ 38 (130)
T PF12273_consen 1 RWVLFAIIIVAILLFLFLFY-CHNRRRRRRGLQPIYGTR 38 (130)
T ss_pred CeeeHHHHHHHHHHHHHHHH-HHHHHHhhcCCCCcCCce
Confidence 36666555555544444433 334444444444444443
No 52
>PF04906 Tweety: Tweety; InterPro: IPR006990 None of the members of the tweety (tty) family have been functionally characterised. However, they are considered to be transmembrane proteins with five potential membrane-spanning regions. A number of potential functions have been suggested on the basis of homology to the yeast FTR1 and FTH1 iron transporter proteins and the mammalian neurotensin receptors 1 and 2 in that they have a similar hydrophobicity profiles although there is no detectable sequence homology to the tweety-related proteins. It has been proposed that the tweety-related proteins could be involved in transport of iron or other divalent cations or alternatively that they may be membrane-bound receptors [].
Probab=78.14 E-value=1.3 Score=44.29 Aligned_cols=24 Identities=25% Similarity=0.649 Sum_probs=15.7
Q ss_pred HHHHHHHHhhheeecccCCCCCCC
Q 020804 99 TAIISVLIICSCAFRRRNSKASPK 122 (321)
Q Consensus 99 lLLL~VliLcLC~~Rrkkkka~~~ 122 (321)
+++|++.++|+||+||+++++...
T Consensus 34 Ll~ll~yl~~~CC~r~~~~~~~~~ 57 (406)
T PF04906_consen 34 LLFLLIYLICRCCCRRPREEKSSR 57 (406)
T ss_pred HHHHHHHHHHHhhCCCCCcccccc
Confidence 555566678888877766554444
No 53
>TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase. This histidine kinase protein is paired with an adjacent response regulator (TIGR03787) gene. It co-occurs with a variant sortase enzyme (TIGR03784), usually in the same gene neighborhood, in proteobacterial species most of which are marine, and with an LPXTG motif-containing sortase target conserved protein (TIGR03788). Sortases and LPXTG proteins are far more common in Gram-positive bacteria, where sortase systems mediate attachment to the cell wall or cross-linking of pilin structures. We give this predicted sensor histidine kinase the gene symbol psdS, for Proteobacterial Dedicated Sortase system Sensor histidine kinase.
Probab=74.64 E-value=4.4 Score=42.63 Aligned_cols=63 Identities=25% Similarity=0.326 Sum_probs=48.3
Q ss_pred eeEEEEeeCceeeecCCCCCcccccCccccccccCCCCCCCCCCCCeeEEEEeec----CccEEEEEEecCc
Q 020804 137 IRVLAEFKPGLITLDGHADDWEDIDGSEFSLLPALDPHAEHEYKGGKMNVKALHD----GHDVYFLLQVDGE 204 (321)
Q Consensus 137 ~~~~a~~~pg~~tldg~~~dw~~i~~~~~~l~pal~~d~~~~y~~g~~~vk~~hd----g~~~ffll~v~g~ 204 (321)
--+-|-=.+|-|.|||..+||..... .|..+|.+- ......-..+++.|. +..+|.++||..+
T Consensus 70 ~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~ 136 (703)
T TIGR03785 70 RDLYAYPLDTAIYLDGYLDDWPEYQH-RFQQYGQLQ----TAGKPKPLSLSFTHMVGKYDQYLYLLFQVTDN 136 (703)
T ss_pred cceeeccCCCCeecCCcccccccccc-hhhhchhhh----hcCCCCCcceEEEEeccccCceEEEEEEEcCC
Confidence 45677778899999999999999887 566666421 111223467899999 9999999999876
No 54
>PF14851 FAM176: FAM176 family
Probab=73.95 E-value=3.1 Score=37.33 Aligned_cols=68 Identities=26% Similarity=0.312 Sum_probs=34.5
Q ss_pred ceEEEeehhhHHHHHHHHHHHhhheeecccCCCCCCCcccCCcccccCCCceeEEEEeeCceeeecCCCCCcccccCccc
Q 020804 86 LILLFGIGTGLLITAIISVLIICSCAFRRRNSKASPKETESGKWSCESDSEIRVLAEFKPGLITLDGHADDWEDIDGSEF 165 (321)
Q Consensus 86 ~iaIVGIaVG~vilLLL~VliLcLC~~Rrkkkka~~~~~~~~~~~c~~~~~~~~~a~~~pg~~tldg~~~dw~~i~~~~~ 165 (321)
+-.|.||++|-++.|+++ ++-+.|+.|++.|+....+.+...-. .+.+-.-|...+|+++...++|
T Consensus 24 LYFv~gVC~GLlLtLcll-V~risc~~r~~~r~~~~~~~~~~~~~-------------~~~~~d~deed~deDd~sdss~ 89 (153)
T PF14851_consen 24 LYFVSGVCAGLLLTLCLL-VIRISCRPRKRCRELPSPKKKQLKES-------------SEDEDDEDEEDEDEDDSSDSSF 89 (153)
T ss_pred HHHHHHHHHHHHHHHHHH-HhhheeeccccccccCCccccccccc-------------cccccccccccccccccccccc
Confidence 445677777777665555 55667754433333332222222111 1222223445667777776666
Q ss_pred cc
Q 020804 166 SL 167 (321)
Q Consensus 166 ~l 167 (321)
.-
T Consensus 90 ~~ 91 (153)
T PF14851_consen 90 PR 91 (153)
T ss_pred cc
Confidence 54
No 55
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=72.90 E-value=2.8 Score=34.48 Aligned_cols=11 Identities=18% Similarity=0.253 Sum_probs=4.3
Q ss_pred heeecccCCCC
Q 020804 109 SCAFRRRNSKA 119 (321)
Q Consensus 109 LC~~Rrkkkka 119 (321)
|..+|.|++++
T Consensus 84 FVILRer~~~~ 94 (101)
T PF06024_consen 84 FVILRERQKSI 94 (101)
T ss_pred EEEEecccccc
Confidence 33334444433
No 56
>PHA03283 envelope glycoprotein E; Provisional
Probab=71.66 E-value=5.9 Score=41.82 Aligned_cols=26 Identities=12% Similarity=-0.012 Sum_probs=11.9
Q ss_pred ehhhHHH--HHHHHHHHhhheeecccCC
Q 020804 92 IGTGLLI--TAIISVLIICSCAFRRRNS 117 (321)
Q Consensus 92 IaVG~vi--lLLL~VliLcLC~~Rrkkk 117 (321)
+++|+++ +++.+++|.|+.|+|++||
T Consensus 404 ~~~~~~~~~~~~~l~vw~c~~~r~~~~~ 431 (542)
T PHA03283 404 LAIICTCAALLVALVVWGCILYRRSNRK 431 (542)
T ss_pred HHHHHHHHHHHHHHhhhheeeehhhcCC
Confidence 3444443 4444445556555444433
No 57
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=71.38 E-value=11 Score=34.19 Aligned_cols=33 Identities=18% Similarity=0.152 Sum_probs=14.2
Q ss_pred EEEeehhhHHHHHHHHHHHhhheeecccCCCCC
Q 020804 88 LLFGIGTGLLITAIISVLIICSCAFRRRNSKAS 120 (321)
Q Consensus 88 aIVGIaVG~vilLLL~VliLcLC~~Rrkkkka~ 120 (321)
++.-...-.+.+..++++++++..+|-|||++.
T Consensus 93 ~l~R~~~Vl~g~s~l~i~yfvir~~R~r~~~rk 125 (163)
T PF06679_consen 93 MLKRALYVLVGLSALAILYFVIRTFRLRRRNRK 125 (163)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 343333333333444444444444455554543
No 58
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=70.77 E-value=6.2 Score=32.44 Aligned_cols=26 Identities=4% Similarity=-0.183 Sum_probs=14.7
Q ss_pred EEEeehhhHHHHHHHHHHHhhheeecc
Q 020804 88 LLFGIGTGLLITAIISVLIICSCAFRR 114 (321)
Q Consensus 88 aIVGIaVG~vilLLL~VliLcLC~~Rr 114 (321)
++||+++..++++ .+++|+++|++|.
T Consensus 71 i~vg~~~~v~~lv-~~l~w~f~~r~ka 96 (96)
T PTZ00382 71 ISVAVVAVVGGLV-GFLCWWFVCRGKA 96 (96)
T ss_pred EEeehhhHHHHHH-HHHhheeEEeecC
Confidence 3355554444333 3346888888873
No 59
>KOG3637 consensus Vitronectin receptor, alpha subunit [Extracellular structures]
Probab=70.45 E-value=9.2 Score=42.99 Aligned_cols=38 Identities=26% Similarity=0.399 Sum_probs=22.6
Q ss_pred CCCccceEEEeehhhHHHHHHHHHHHhhheeecccCCC
Q 020804 81 GKHSNLILLFGIGTGLLITAIISVLIICSCAFRRRNSK 118 (321)
Q Consensus 81 kKklS~iaIVGIaVG~vilLLL~VliLcLC~~Rrkkkk 118 (321)
+.....|+||+-++|++++|+|++++|.=|=|-||+||
T Consensus 973 ~~~vp~wiIi~svl~GLLlL~llv~~LwK~GFFKR~r~ 1010 (1030)
T KOG3637|consen 973 ERPVPLWIIILSVLGGLLLLALLVLLLWKCGFFKRNRK 1010 (1030)
T ss_pred CCccceeeehHHHHHHHHHHHHHHHHHHhcCccccCCC
Confidence 44467888886666766666555555555544344443
No 60
>PF14979 TMEM52: Transmembrane 52
Probab=69.83 E-value=3.1 Score=37.60 Aligned_cols=76 Identities=13% Similarity=0.139 Sum_probs=44.3
Q ss_pred CCccceEEEeehhhHHHHHHHH-HHHhhheeecccCCCCCCCcccCCcccccCCCceeEEEEeeCceeeecCCCCCcccc
Q 020804 82 KHSNLILLFGIGTGLLITAIIS-VLIICSCAFRRRNSKASPKETESGKWSCESDSEIRVLAEFKPGLITLDGHADDWEDI 160 (321)
Q Consensus 82 KklS~iaIVGIaVG~vilLLL~-VliLcLC~~Rrkkkka~~~~~~~~~~~c~~~~~~~~~a~~~pg~~tldg~~~dw~~i 160 (321)
+..++|-|- +++-+++++||| +..+|+.++..||++.+..|++.+.-.|+- .| |.+|-+..--+-|
T Consensus 15 ~W~~LWyIw-Lill~~~llLLCG~ta~C~rfCClrk~~~~q~~~~~~~~P~~~----TV--------ia~D~DSt~hsTv 81 (154)
T PF14979_consen 15 RWSSLWYIW-LILLIGFLLLLCGLTASCVRFCCLRKQAHTQTHEPPAPQPYEV----TV--------IAVDSDSTLHSTV 81 (154)
T ss_pred ceehhhHHH-HHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCCCCCceE----EE--------EeccCCccccchh
Confidence 455666654 444444444444 445666544567777788888888778863 22 4566655555555
Q ss_pred cCcccccccc
Q 020804 161 DGSEFSLLPA 170 (321)
Q Consensus 161 ~~~~~~l~pa 170 (321)
.+.+.-..|+
T Consensus 82 TS~sSVq~P~ 91 (154)
T PF14979_consen 82 TSYSSVQYPA 91 (154)
T ss_pred hhhhcccccc
Confidence 5555544444
No 61
>PF10577 UPF0560: Uncharacterised protein family UPF0560; InterPro: IPR018890 This family of proteins has no known function.
Probab=69.17 E-value=3.6 Score=45.16 Aligned_cols=14 Identities=29% Similarity=0.335 Sum_probs=6.8
Q ss_pred cceeeceEEEEEEe
Q 020804 32 STLVGDYKLLNFTW 45 (321)
Q Consensus 32 ssLfGDYkVINVTw 45 (321)
.-|+=+|..=-++|
T Consensus 234 ~qLvWty~AphLGY 247 (807)
T PF10577_consen 234 SQLVWTYIAPHLGY 247 (807)
T ss_pred CEEEEEEECcccch
Confidence 34444455445555
No 62
>cd07912 Tweety_N N-terminal domain of the protein encoded by the Drosophila tweety gene and related proteins, a family of chloride ion channels. The protein product of the Drosophila tweety (tty) gene is thought to form a trans-membrane protein with five membrane-spanning regions and a cytoplasmic C-terminus. This N-terminal domain contains the putative transmembrane spanning regions. Tweety has been suggested as a candidate for a large conductance chloride channel, both in vertebrate and insect cells. Three human homologs have been identified and designated TTYH1-3. TTYH2 has been associated with the progression of cancer, and Drosophila melanogaster tweety has been assumed to play a role in development. TTYH2, and TTYH3 bind to and are ubiquinated by Nedd4-2, a HECT type E3 ubiquitin ligase, which most likely plays a role in controlling the cellular levels of tweety family proteins.
Probab=68.85 E-value=3.2 Score=42.24 Aligned_cols=19 Identities=26% Similarity=0.438 Sum_probs=12.8
Q ss_pred HHHHHHHHHHhhheeeccc
Q 020804 97 LITAIISVLIICSCAFRRR 115 (321)
Q Consensus 97 vilLLL~VliLcLC~~Rrk 115 (321)
+.++++++.++|.||.||+
T Consensus 52 l~ll~ll~~~~~~CCcr~~ 70 (418)
T cd07912 52 LSLLFLLVYLITRCCDRKP 70 (418)
T ss_pred HHHHHHHHHHHHhccCCCC
Confidence 3455555567788888775
No 63
>KOG3514 consensus Neurexin III-alpha [Signal transduction mechanisms]
Probab=68.46 E-value=11 Score=43.48 Aligned_cols=26 Identities=23% Similarity=0.355 Sum_probs=15.8
Q ss_pred EEEeehhhHHHHHHHHHHHhhheeecc
Q 020804 88 LLFGIGTGLLITAIISVLIICSCAFRR 114 (321)
Q Consensus 88 aIVGIaVG~vilLLL~VliLcLC~~Rr 114 (321)
-++|+++|+++.+.||+| |.|+...|
T Consensus 1513 sttGmVvGIvaAaaLcIL-ilL~am~k 1538 (1591)
T KOG3514|consen 1513 STTGMVVGIVAAAALCIL-ILLYAMYK 1538 (1591)
T ss_pred CccchhhHHHHHHHHHHH-HHHhhccc
Confidence 356778888877777744 33444444
No 64
>PF13584 BatD: Oxygen tolerance
Probab=66.29 E-value=11 Score=37.47 Aligned_cols=17 Identities=41% Similarity=1.179 Sum_probs=12.3
Q ss_pred cceeeceEE--EEEEecCC
Q 020804 32 STLVGDYKL--LNFTWFEP 48 (321)
Q Consensus 32 ssLfGDYkV--INVTwF~P 48 (321)
+.--|+|+| |.+.||-|
T Consensus 346 p~~~G~~~lP~i~~~~fdp 364 (484)
T PF13584_consen 346 PKKPGDFTLPAIRFSWFDP 364 (484)
T ss_pred eCCCCeEEcCCeEEEEEcC
Confidence 444678876 78888877
No 65
>PF05510 Sarcoglycan_2: Sarcoglycan alpha/epsilon; InterPro: IPR008908 Sarcoglycans are a subcomplex of transmembrane proteins which are part of the dystrophin-glycoprotein complex. They are expressed in the skeletal, cardiac and smooth muscle. Although numerous studies have been conducted on the sarcoglycan subcomplex in skeletal and cardiac muscle, the manner of the distribution and localisation of these proteins along the nonjunctional sarcolemma is not clear []. This family contains alpha and epsilon members.; GO: 0016012 sarcoglycan complex
Probab=65.38 E-value=6 Score=40.17 Aligned_cols=28 Identities=14% Similarity=0.126 Sum_probs=18.8
Q ss_pred ehhhHHHHHHHHHHHhhheeecccCCCC
Q 020804 92 IGTGLLITAIISVLIICSCAFRRRNSKA 119 (321)
Q Consensus 92 IaVG~vilLLL~VliLcLC~~Rrkkkka 119 (321)
++-++++++|++++..++|++|.+.+|+
T Consensus 290 ~iPl~i~llL~llLs~Imc~rREG~~~r 317 (386)
T PF05510_consen 290 AIPLIIALLLLLLLSYIMCCRREGVKKR 317 (386)
T ss_pred HHHHHHHHHHHHHHHHHheechHHhhcc
Confidence 4556666777777788888887444443
No 66
>PHA03292 envelope glycoprotein I; Provisional
Probab=64.91 E-value=18 Score=37.12 Aligned_cols=34 Identities=24% Similarity=0.345 Sum_probs=15.8
Q ss_pred eEEEeehhhHHHHHHHHHHH----------hhheeecccCCCCC
Q 020804 87 ILLFGIGTGLLITAIISVLI----------ICSCAFRRRNSKAS 120 (321)
Q Consensus 87 iaIVGIaVG~vilLLL~Vli----------LcLC~~Rrkkkka~ 120 (321)
.++|-|-+-.+++|||.|+. |..|..||-.|.+-
T Consensus 318 ~a~ivip~~~~~llll~~~gaiin~a~rkh~l~casrriy~~~~ 361 (413)
T PHA03292 318 VAMIVIPTACVVLLLLAVVGAIINGAVRKHLLSCASRRIYRPRQ 361 (413)
T ss_pred EEEEEhHHHHHHHHHHHHHHHHHhHHHHHhhhhcccceeeccCC
Confidence 33443555555544444431 34455555555443
No 67
>KOG4221 consensus Receptor mediating netrin-dependent axon guidance [Signal transduction mechanisms]
Probab=64.28 E-value=9 Score=44.22 Aligned_cols=73 Identities=16% Similarity=0.318 Sum_probs=40.0
Q ss_pred ceEEEeehhhHHHHHHHHHHHhhheeecccCCCCCCCcccCCcccccCCCceeEEEEeeCceeeecCCCCCcccccCccc
Q 020804 86 LILLFGIGTGLLITAIISVLIICSCAFRRRNSKASPKETESGKWSCESDSEIRVLAEFKPGLITLDGHADDWEDIDGSEF 165 (321)
Q Consensus 86 ~iaIVGIaVG~vilLLL~VliLcLC~~Rrkkkka~~~~~~~~~~~c~~~~~~~~~a~~~pg~~tldg~~~dw~~i~~~~~ 165 (321)
+..|+ |+.+++++++++++++++|++| +.++++-...+|..+..--++-.|+|+-..+.+....-+.+|-.+.
T Consensus 1059 ll~i~-l~~~~vi~i~~~~~v~v~C~~r------~~~~~~~~r~~~~~~~~~g~s~~~~ppDLwI~~~~~elkn~~k~~~ 1131 (1381)
T KOG4221|consen 1059 LLDII-LVAVAVILILVLLLVLVTCRRR------SGSNRKKKRASIKKGKPKGISGDFKPPDLWIHHERMELKNIEKPEY 1131 (1381)
T ss_pred eeeee-eehhhhHHHHHHhhheeEEecc------ccCCcCccceeeeccCCCCCcCCCCCCccccccchhhcCCCCCCCc
Confidence 44555 6666666666665555555433 2333334444555555555666777775555555555555555544
No 68
>PF10670 DUF4198: Domain of unknown function (DUF4198)
Probab=64.19 E-value=11 Score=32.59 Aligned_cols=52 Identities=21% Similarity=0.526 Sum_probs=42.8
Q ss_pred EeeCceeeecCCCCCcccccCccccccccCCCCCCCCCCCCeeEEEEeecCccE
Q 020804 142 EFKPGLITLDGHADDWEDIDGSEFSLLPALDPHAEHEYKGGKMNVKALHDGHDV 195 (321)
Q Consensus 142 ~~~pg~~tldg~~~dw~~i~~~~~~l~pal~~d~~~~y~~g~~~vk~~hdg~~~ 195 (321)
.|--=.|+.++..++|...-|..+-+.|.-+| .+...|..++||+++||+-+
T Consensus 113 ~~aK~~v~~~~~~~~~~~~~g~~lEIvPl~~P--~~l~~g~~~~~~vl~~GkPl 164 (215)
T PF10670_consen 113 KYAKTLVNVGGPSEDWSKPVGLPLEIVPLTNP--YKLKAGDPLPFQVLFDGKPL 164 (215)
T ss_pred EEEEEEEEccCCccccccccCCcEEEEECcCc--ccccCCCEEEEEEEECCeEc
Confidence 34344557888999999999999999999887 44578899999999999854
No 69
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=64.19 E-value=4.7 Score=32.99 Aligned_cols=32 Identities=13% Similarity=0.056 Sum_probs=12.6
Q ss_pred eEEEeehhhHHHHHHHHHHHhhheeecccCCC
Q 020804 87 ILLFGIGTGLLITAIISVLIICSCAFRRRNSK 118 (321)
Q Consensus 87 iaIVGIaVG~vilLLL~VliLcLC~~Rrkkkk 118 (321)
.-|++|++-++++++.+|+|.......||-||
T Consensus 4 l~i~~iialiv~~iiaIvvW~iv~ieYrk~~r 35 (81)
T PF00558_consen 4 LEILAIIALIVALIIAIVVWTIVYIEYRKIKR 35 (81)
T ss_dssp ----HHHHHHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666666677665544444333
No 70
>PF11980 DUF3481: Domain of unknown function (DUF3481); InterPro: IPR022579 This domain of unknown function is located in the C terminus of the eukaryotic neuropilin receptor family of proteins. It is found in association with PF00754 from PFAM, PF00431 from PFAM and PF00629 from PFAM. There are two completely conserved residues (Y and E) that may be functionally important.
Probab=64.13 E-value=10 Score=31.63 Aligned_cols=41 Identities=15% Similarity=0.062 Sum_probs=22.3
Q ss_pred ccceEEEeehhhHHHHHHHHHH-Hhhheeec--ccCCCCCCCcc
Q 020804 84 SNLILLFGIGTGLLITAIISVL-IICSCAFR--RRNSKASPKET 124 (321)
Q Consensus 84 lS~iaIVGIaVG~vilLLL~Vl-iLcLC~~R--rkkkka~~~~~ 124 (321)
+..+.+--|+.|++.++|+.|+ .+.|||.| .-.||+.-++.
T Consensus 12 lp~~~yyiiA~gga~llL~~v~l~vvL~C~r~~~a~kk~~~s~~ 55 (87)
T PF11980_consen 12 LPPYWYYIIAMGGALLLLVAVCLGVVLYCHRFHWAAKKRSHSVL 55 (87)
T ss_pred CCceeeHHHhhccHHHHHHHHHHHHHHhhhhhccccccCcccee
Confidence 5556665466666666666555 44444444 44455554444
No 71
>PF02158 Neuregulin: Neuregulin family; InterPro: IPR002154 Neuregulins are a sub-family of EGF-like molecules that have been shown to play multiple essential roles in vertebrate embryogenesis including: cardiac development, Schwann cell and oligodendrocyte differentiation, some aspects of neuronal development, as well as the formation of neuromuscular synapses [, ]. Included in the family are heregulin; neu differentiation factor; acetylcholine receptor synthesis stimulator; glial growth factor; and sensory and motor-neuron derived factor []. Multiple family members are generated by alternate splicing or by use of several cell type-specific transcription initiation sites. In general, they bind to and activate the erbB family of receptor tyrosine kinases (erbB2 (HER2), erbB3 (HER3), and erbB4 (HER4)), functioning both as heterodimers and homodimers. The transmembrane forms of neuregulin 1 (NRG1) are present within synaptic vesicles, including those containing glutamate []. After exocytosis, NRG1 is in the presynaptic membrane, where the ectodomain of NRG1 may be cleaved off. The ectodomain then migrates across the synaptic cleft and binds to and activates a member of the EGF-receptor family on the postsynaptic membrane. This has been shown to increase the expression of certain glutamate-receptor subunits. NRG1 appears to signal for glutamate-receptor subunit expression, localisation, and /or phosphorylation facilitating subsequent glutamate transmission. The NRG1 gene has been identified as a potential gene determining susceptibility to schizophrenia by a combination of genetic linkage and association approaches []. ; GO: 0005102 receptor binding, 0009790 embryo development; PDB: 1HRE_A 1HAE_A 1HAF_A 1HRF_A.
Probab=63.70 E-value=2.3 Score=43.34 Aligned_cols=29 Identities=24% Similarity=0.548 Sum_probs=0.0
Q ss_pred ceEEEeehhhHHHHHHHHHHHhhheeeccc
Q 020804 86 LILLFGIGTGLLITAIISVLIICSCAFRRR 115 (321)
Q Consensus 86 ~iaIVGIaVG~vilLLL~VliLcLC~~Rrk 115 (321)
...|.||++|.+|+-|+||+ =++|+-+|+
T Consensus 9 VLTITgIcvaLlVVGi~Cvv-~aYCKTKKQ 37 (404)
T PF02158_consen 9 VLTITGICVALLVVGIVCVV-DAYCKTKKQ 37 (404)
T ss_dssp ------------------------------
T ss_pred hhhhhhhhHHHHHHHHHHHH-HHHHHhHHH
Confidence 45788899888887777743 134443333
No 72
>PF00974 Rhabdo_glycop: Rhabdovirus spike glycoprotein; InterPro: IPR001903 Different families of ssRNA negative-strand viruses contain glycoproteins responsible for forming spikes on the surface of the virion. The glycoprotein spike is made up of a trimer of glycoproteins. These proteins are frequently abbreviated to G protein. Channel formed by glycoprotein spike is thought to function in a similar manner to Influenza virus M2 protein channel, thus allowing a signal to pass across the viral membrane to signal for viral uncoating [, ].; GO: 0019031 viral envelope; PDB: 2CMZ_C 2J6J_A 3EGD_D.
Probab=62.86 E-value=2.4 Score=43.61 Aligned_cols=14 Identities=36% Similarity=0.876 Sum_probs=0.0
Q ss_pred HHHHHHHhhheeec
Q 020804 100 AIISVLIICSCAFR 113 (321)
Q Consensus 100 LLL~VliLcLC~~R 113 (321)
+|+++++.|.|+++
T Consensus 466 illi~l~~cc~~~~ 479 (501)
T PF00974_consen 466 ILLILLIRCCCRCR 479 (501)
T ss_dssp --------------
T ss_pred HHHHHHHHHhhhhc
Confidence 33333444444443
No 73
>PF04689 S1FA: DNA binding protein S1FA; InterPro: IPR006779 S1FA is an unusual small plant peptide of only 70 amino acids with a basic domain which contains a nuclear localization signal and a putative DNA binding helix. S1FA is highly conserved between dicotyledonous and monocotyledonous plants and may be a DNA-binding protein that specifically recognises the negative promoter element S1F [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=61.60 E-value=11 Score=30.17 Aligned_cols=29 Identities=14% Similarity=-0.039 Sum_probs=20.3
Q ss_pred CCCccceEEEeehhhHHHHHHHHHHHhhh
Q 020804 81 GKHSNLILLFGIGTGLLITAIISVLIICS 109 (321)
Q Consensus 81 kKklS~iaIVGIaVG~vilLLL~VliLcL 109 (321)
.|.+|..+||-|+|+.+++++++-..++.
T Consensus 7 ~KGlnPGlIVLlvV~g~ll~flvGnyvlY 35 (69)
T PF04689_consen 7 AKGLNPGLIVLLVVAGLLLVFLVGNYVLY 35 (69)
T ss_pred ccCCCCCeEEeehHHHHHHHHHHHHHHHH
Confidence 37788889988888888766655443333
No 74
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=61.54 E-value=11 Score=40.08 Aligned_cols=10 Identities=20% Similarity=0.564 Sum_probs=6.0
Q ss_pred cccceeeeec
Q 020804 285 FGHLVDVYAW 294 (321)
Q Consensus 285 ~g~l~d~yaw 294 (321)
+....|+|+.
T Consensus 855 ~~~~sDv~S~ 864 (968)
T PLN00113 855 ITEKSDIYGF 864 (968)
T ss_pred CCcccchhhH
Confidence 4556677663
No 75
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=61.11 E-value=12 Score=27.12 Aligned_cols=17 Identities=6% Similarity=0.251 Sum_probs=7.4
Q ss_pred ceEEEeehhhHHHHHHH
Q 020804 86 LILLFGIGTGLLITAII 102 (321)
Q Consensus 86 ~iaIVGIaVG~vilLLL 102 (321)
-.++|.+++=+++++++
T Consensus 15 ~~VvVPV~vI~~vl~~~ 31 (40)
T PF08693_consen 15 VGVVVPVGVIIIVLGAF 31 (40)
T ss_pred EEEEechHHHHHHHHHH
Confidence 44445444444433333
No 76
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=60.77 E-value=33 Score=32.82 Aligned_cols=34 Identities=15% Similarity=0.130 Sum_probs=26.6
Q ss_pred CCCCCCCccceEEEeehhhHHHHHHHHHHHhhhe
Q 020804 77 TSNKGKHSNLILLFGIGTGLLITAIISVLIICSC 110 (321)
Q Consensus 77 sSsKkKklS~iaIVGIaVG~vilLLL~VliLcLC 110 (321)
..++..-.-.++|||-+++.+++++|.+++.+.+
T Consensus 31 ~~~~d~~~I~iaiVAG~~tVILVI~i~v~vR~CR 64 (221)
T PF08374_consen 31 SRSKDYVKIMIAIVAGIMTVILVIFIVVLVRYCR 64 (221)
T ss_pred cccccceeeeeeeecchhhhHHHHHHHHHHHHHh
Confidence 3345566678999999999999999999999444
No 77
>PF15347 PAG: Phosphoprotein associated with glycosphingolipid-enriched
Probab=60.44 E-value=8.1 Score=39.63 Aligned_cols=21 Identities=19% Similarity=0.510 Sum_probs=10.4
Q ss_pred HHHhhheeecccCCCCCCCcc
Q 020804 104 VLIICSCAFRRRNSKASPKET 124 (321)
Q Consensus 104 VliLcLC~~Rrkkkka~~~~~ 124 (321)
+|+||--|-|.||.|.-.+++
T Consensus 33 LifLCsSC~reKK~~~~~GDH 53 (428)
T PF15347_consen 33 LIFLCSSCDREKKPKQQSGDH 53 (428)
T ss_pred HHHHhhcccccccCCCCCCch
Confidence 344444455666666444433
No 78
>KOG4482 consensus Sarcoglycan complex, alpha/epsilon subunits [Function unknown]
Probab=60.43 E-value=6 Score=40.65 Aligned_cols=27 Identities=15% Similarity=0.070 Sum_probs=17.9
Q ss_pred hhhHHHHHHHHHHHhhheeecccCCCC
Q 020804 93 GTGLLITAIISVLIICSCAFRRRNSKA 119 (321)
Q Consensus 93 aVG~vilLLL~VliLcLC~~Rrkkkka 119 (321)
+.++++++|++++..++||+|.+.+|+
T Consensus 303 Ipl~Valll~~~La~imc~rrEg~~~r 329 (449)
T KOG4482|consen 303 IPLGVALLLVLALAYIMCCRREGQKKR 329 (449)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhccccc
Confidence 345666677777888888887554443
No 79
>KOG4433 consensus Tweety transmembrane/cell surface protein [General function prediction only]
Probab=59.89 E-value=5.6 Score=41.79 Aligned_cols=32 Identities=22% Similarity=0.559 Sum_probs=19.7
Q ss_pred HHHHHHHHhhheeecccCCCCCCCcccCCccc
Q 020804 99 TAIISVLIICSCAFRRRNSKASPKETESGKWS 130 (321)
Q Consensus 99 lLLL~VliLcLC~~Rrkkkka~~~~~~~~~~~ 130 (321)
++.|++.|||.||.||+..++-..+...-.|+
T Consensus 58 Ll~ll~yli~~cC~Rr~~~~~~~~~~~c~s~~ 89 (526)
T KOG4433|consen 58 LLFLLFYLICRCCCRRETTGRKRRRVRCLSWS 89 (526)
T ss_pred HHHHHHHHHHHHHcCCCccCCCCCCcceeeeh
Confidence 44455568999999888554444444444454
No 80
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=58.74 E-value=6 Score=42.63 Aligned_cols=27 Identities=26% Similarity=0.511 Sum_probs=20.3
Q ss_pred eEEEeehhhHHHHHHHHHHHhhheeec
Q 020804 87 ILLFGIGTGLLITAIISVLIICSCAFR 113 (321)
Q Consensus 87 iaIVGIaVG~vilLLL~VliLcLC~~R 113 (321)
..+|.+++|.++++++-++.+||||+|
T Consensus 92 g~~v~~~i~ll~~il~P~vg~~fCcCR 118 (806)
T PF05478_consen 92 GFLVCAVIGLLFIILMPLVGLCFCCCR 118 (806)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 345556778887777777888999886
No 81
>PF03229 Alpha_GJ: Alphavirus glycoprotein J; InterPro: IPR004913 The exact function of the herpesvirus glycoprotein J is unknown, but it appears to play a role in the inhibition of apotosis of the host cell [].; GO: 0019050 suppression by virus of host apoptosis
Probab=58.43 E-value=9.2 Score=33.62 Aligned_cols=18 Identities=11% Similarity=0.202 Sum_probs=14.1
Q ss_pred EEEeehhhHHHHHHHHHH
Q 020804 88 LLFGIGTGLLITAIISVL 105 (321)
Q Consensus 88 aIVGIaVG~vilLLL~Vl 105 (321)
-|++++||++++|.|.++
T Consensus 84 ~aLp~VIGGLcaL~Laam 101 (126)
T PF03229_consen 84 FALPLVIGGLCALTLAAM 101 (126)
T ss_pred cchhhhhhHHHHHHHHHH
Confidence 667899999987766655
No 82
>KOG4818 consensus Lysosomal-associated membrane protein [General function prediction only]
Probab=58.21 E-value=8.9 Score=38.79 Aligned_cols=35 Identities=23% Similarity=0.388 Sum_probs=24.3
Q ss_pred ceEEEeehhhHHHHHHHHHHHhhheeecccCCCCCC
Q 020804 86 LILLFGIGTGLLITAIISVLIICSCAFRRRNSKASP 121 (321)
Q Consensus 86 ~iaIVGIaVG~vilLLL~VliLcLC~~Rrkkkka~~ 121 (321)
.-.++=|++|++++.|++++++.+|.. ||+|++.|
T Consensus 325 ~siv~PivVg~~l~gl~~~vliaylIg-rr~~~~gY 359 (362)
T KOG4818|consen 325 LNIVLPIAVGAILAGLVLVVLIAYLIG-RRRSHSGY 359 (362)
T ss_pred cceecchHHHHHHHHHHHHHHHHhhee-heeccccc
Confidence 334555889999888888888888876 44455544
No 83
>PF05283 MGC-24: Multi-glycosylated core protein 24 (MGC-24); InterPro: IPR007947 CD164 is a mucin-like receptor, or sialomucin, with specificity in receptor/ ligand interactions that depends on the structural characteristics of the mucin-like receptor. Its functions include mediating, or regulating, haematopoietic progenitor cell adhesion and the negative regulation of their growth and/or-differentiation. It exists in the native state as a disulphide- linked homodimer of two 80-85kDa subunits. It is usually expressed by CD34+ and CD341o/- haematopoietic stem cells and associated microenvironmental cells. It contains, in its extracellular region, two mucin domains (I and II) linked by a non-mucin domain, which has been predicted to contain intra- disulphide bridges. This receptor may play a key role in haematopoiesis by facilitating the adhesion of human CD34+ cells to bone marrow stroma and by negatively regulating CD34+ CD341o/- haematopoietic progenitor cell proliferation. These effects involve the CD164 class I and/or II epitopes recognised by the monoclonal antibodies (mAbs) 105A5 and 103B2/9E10. These epitopes are carbohydrate-dependent and are located on the N-terminal mucin domain I [, ]. It has been found that murine MGC-24v and rat endolyn share significant sequence similarities with human CD164. However, CD164 lacks the consensus glycosaminoglycan (GAG)-attachment site found in MGC-24; it is possible that GAG-association is responsible for the high molecular weight of the epithelial-derived MGC-24 glycoprotein []. Genomic structure studies have placed CD164 within the mucin-subgroup that comprises multiple exons, and demonstrate the diverse chromosomal distribution of this family of molecules. Molecules with such multiple exons may have sophisticated regulatory mechanisms that involve not only post-translational modifications of the oligosaccharide side chains, but also differential exon usage. Although differences in the intron and exon sizes are seen between the mouse and human genes, the predicted proteins are similar in size and structure, maintaining functionally important motifs that regulate cell proliferation or subcellular distribution []. CD164 is a gene whose expression depends on differential usage of poly- adenylation sites within the 3'-UTR. The conserved distribution of the 3.2- and 1.2-kb CD164 transcripts between mouse and human suggests that (i) a mechanism may exist to regulate tissue-specific polyadenylation, and (ii) differences in polyadenylation are important for the expression and function of CD164 in different tissues. Two other aspects of the structure of CD164 are of particular interest. First, it shares one of several conserved features of a cytokine-binding pocket - in this respect, it is notable that evidence exists for a class of cell-surface sialomucin modulators that directly interact with growth factor receptors to regulate their response to physiological ligands. Second, its cytoplasmic tail contains a C-terminal YHTL motif found in many endocytic membrane proteins or receptors. These Tyr-based motifs bind to adaptor proteins, which mediate the sorting of membrane proteins into transport vesicles from the plasma membrane to the endosomes, and between intracellular compartments.
Probab=57.32 E-value=21 Score=32.96 Aligned_cols=33 Identities=18% Similarity=0.297 Sum_probs=14.5
Q ss_pred CCCCCccceEEEeehhhHHHHHHHHHHHhhheeecc
Q 020804 79 NKGKHSNLILLFGIGTGLLITAIISVLIICSCAFRR 114 (321)
Q Consensus 79 sKkKklS~iaIVGIaVG~vilLLL~VliLcLC~~Rr 114 (321)
.|+++....--|| |++++|-|+.|++++.+|.|
T Consensus 153 ~~~s~FD~~SFiG---GIVL~LGv~aI~ff~~KF~k 185 (186)
T PF05283_consen 153 PKKSTFDAASFIG---GIVLTLGVLAIIFFLYKFCK 185 (186)
T ss_pred CCCCCCchhhhhh---HHHHHHHHHHHHHHHhhhcc
Confidence 3444444433332 33334444444555555544
No 84
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=55.46 E-value=7 Score=32.98 Aligned_cols=6 Identities=17% Similarity=0.540 Sum_probs=3.2
Q ss_pred cccCCC
Q 020804 130 SCESDS 135 (321)
Q Consensus 130 ~c~~~~ 135 (321)
.|-++-
T Consensus 47 p~YgNL 52 (107)
T PF15330_consen 47 PCYGNL 52 (107)
T ss_pred cccccc
Confidence 555554
No 85
>PF15298 AJAP1_PANP_C: AJAP1/PANP C-terminus
Probab=53.63 E-value=13 Score=35.17 Aligned_cols=57 Identities=19% Similarity=0.424 Sum_probs=34.2
Q ss_pred EeehhhHHHHHHHHHHHhhheeecccCCCCCCCcccCC---cccccCCCceeEEEEeeC----ceeeecCC
Q 020804 90 FGIGTGLLITAIISVLIICSCAFRRRNSKASPKETESG---KWSCESDSEIRVLAEFKP----GLITLDGH 153 (321)
Q Consensus 90 VGIaVG~vilLLL~VliLcLC~~Rrkkkka~~~~~~~~---~~~c~~~~~~~~~a~~~p----g~~tldg~ 153 (321)
|=|.+=+++++||..|+|=+||-|..|+|+ .+|+... |-+|.. +.+|.| ..+++=+.
T Consensus 104 ITvSlImViaAliTtlvlK~C~~~s~~~r~-~s~qr~~~qqeeS~Q~------Ltd~~p~~~ps~~difta 167 (205)
T PF15298_consen 104 ITVSLIMVIAALITTLVLKNCCAQSQNRRR-NSHQRKINQQEESCQN------LTDFTPARVPSSVDIFTA 167 (205)
T ss_pred EeeehhHHHHHhhhhhhhhhhhhhhcccCC-Cccccccccchhhccc------cccCCcccCccceeEecc
Confidence 335555666777777788888877766655 4555444 446654 335555 55555443
No 86
>PF01708 Gemini_mov: Geminivirus putative movement protein ; InterPro: IPR002621 This family consists of putative movement proteins from Maize streak virus and Wheat dwarf virus [].; GO: 0046740 spread of virus in host, cell to cell, 0016021 integral to membrane
Probab=52.85 E-value=22 Score=29.86 Aligned_cols=11 Identities=18% Similarity=-0.016 Sum_probs=4.8
Q ss_pred ccceEEEeehh
Q 020804 84 SNLILLFGIGT 94 (321)
Q Consensus 84 lS~iaIVGIaV 94 (321)
-++...|.|++
T Consensus 34 ws~vv~v~i~~ 44 (91)
T PF01708_consen 34 WSRVVEVAIFT 44 (91)
T ss_pred ceeEeeeeehH
Confidence 34444444433
No 87
>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A ....
Probab=52.22 E-value=11 Score=29.78 Aligned_cols=28 Identities=11% Similarity=0.198 Sum_probs=11.6
Q ss_pred hhhHHHHHHHHHHHhhheeecccCCCCC
Q 020804 93 GTGLLITAIISVLIICSCAFRRRNSKAS 120 (321)
Q Consensus 93 aVG~vilLLL~VliLcLC~~Rrkkkka~ 120 (321)
++++++.++++++++.+....+++++..
T Consensus 3 i~~~~~g~~~ll~~v~~~~~~~rr~~~~ 30 (75)
T PF14575_consen 3 IASIIVGVLLLLVLVIIVIVCFRRCKYS 30 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCTT----
T ss_pred EehHHHHHHHHHHhheeEEEEEeeEcCC
Confidence 3444445455544444444456555544
No 88
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=51.83 E-value=5.5 Score=40.08 Aligned_cols=23 Identities=57% Similarity=1.090 Sum_probs=18.8
Q ss_pred CceeeeeeecC--CceeeecCCCCCC
Q 020804 216 PSIALMFQIGE--DATYHNMGGCKEG 239 (321)
Q Consensus 216 ~svalmf~~g~--~a~y~nmggc~~~ 239 (321)
||| +|||+-+ |+||++.|||||-
T Consensus 161 psv-tmm~veekpdvty~dvggckeq 185 (435)
T KOG0729|consen 161 PSV-TMMQVEEKPDVTYSDVGGCKEQ 185 (435)
T ss_pred Cce-eEEEeecCCCcccccccchHHH
Confidence 777 5678876 6899999999974
No 89
>PTZ00208 65 kDa invariant surface glycoprotein; Provisional
Probab=51.62 E-value=5.8 Score=40.85 Aligned_cols=41 Identities=20% Similarity=0.264 Sum_probs=30.0
Q ss_pred cceEEEeehhhHHHHHHHHHHHhhheeecccCCCCCCCccc
Q 020804 85 NLILLFGIGTGLLITAIISVLIICSCAFRRRNSKASPKETE 125 (321)
Q Consensus 85 S~iaIVGIaVG~vilLLL~VliLcLC~~Rrkkkka~~~~~~ 125 (321)
+..+|+++.|=++||+++.+.+++|.++||....+|..-..
T Consensus 385 ~~~i~~avl~p~~il~~~~~~~~~~v~rrr~~~~dv~~~~~ 425 (436)
T PTZ00208 385 TAMIILAVLVPAIILAIIAVAFFIMVKRRRNSSEDVDTGKA 425 (436)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhheeeeeccCCchhcccccc
Confidence 45666777777888887777788888888888888844333
No 90
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=50.83 E-value=13 Score=33.30 Aligned_cols=31 Identities=23% Similarity=0.193 Sum_probs=18.5
Q ss_pred ceEEEeehhhHHHHHHHHHHHhhheeecccCC
Q 020804 86 LILLFGIGTGLLITAIISVLIICSCAFRRRNS 117 (321)
Q Consensus 86 ~iaIVGIaVG~vilLLL~VliLcLC~~Rrkkk 117 (321)
-+++- ++++.++++++...+..+|++.||+|
T Consensus 100 Yia~~-~il~il~~i~is~~~~~~yr~~r~~~ 130 (139)
T PHA03099 100 YIPSP-GIVLVLVGIIITCCLLSVYRFTRRTK 130 (139)
T ss_pred hhhhh-HHHHHHHHHHHHHHHHhhheeeeccc
Confidence 34433 34566666666666777777766555
No 91
>PLN03160 uncharacterized protein; Provisional
Probab=49.43 E-value=25 Score=32.47 Aligned_cols=32 Identities=6% Similarity=-0.101 Sum_probs=19.7
Q ss_pred CeeEEEEeecCccEEEEEEecCceeeecCCccc
Q 020804 182 GKMNVKALHDGHDVYFLLQVDGEYVYSKGENTR 214 (321)
Q Consensus 182 g~~~vk~~hdg~~~ffll~v~g~y~~~~~~~~~ 214 (321)
+++++.+.|+|..|= --.+|+.|.=.++...+
T Consensus 112 ~~~~~~v~Y~g~~vG-~a~~p~g~~~ar~T~~l 143 (219)
T PLN03160 112 SNTTTTIYYGGTVVG-EARTPPGKAKARRTMRM 143 (219)
T ss_pred cCeEEEEEECCEEEE-EEEcCCcccCCCCeEEE
Confidence 566777788886553 35677666555554443
No 92
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=49.38 E-value=9 Score=27.58 Aligned_cols=18 Identities=28% Similarity=0.466 Sum_probs=9.9
Q ss_pred cceEE-EeehhhHHHHHHHH
Q 020804 85 NLILL-FGIGTGLLITAIIS 103 (321)
Q Consensus 85 S~iaI-VGIaVG~vilLLL~ 103 (321)
++++| +|+++|.++ ++++
T Consensus 4 s~IaIIv~V~vg~~i-iii~ 22 (38)
T PF02439_consen 4 STIAIIVAVVVGMAI-IIIC 22 (38)
T ss_pred chhhHHHHHHHHHHH-HHHH
Confidence 34555 566666664 4444
No 93
>PHA03164 hypothetical protein; Provisional
Probab=48.83 E-value=11 Score=31.21 Aligned_cols=30 Identities=17% Similarity=0.308 Sum_probs=14.7
Q ss_pred CCCccceEEEeehhhHHHHHHHHHHHhhhee
Q 020804 81 GKHSNLILLFGIGTGLLITAIISVLIICSCA 111 (321)
Q Consensus 81 kKklS~iaIVGIaVG~vilLLL~VliLcLC~ 111 (321)
|+.-.+.+.+ |..|-++..||+++++...+
T Consensus 52 nnrRktftFl-vLtgLaIamILfiifvlyvF 81 (88)
T PHA03164 52 NNRRKTFTFL-VLTGLAIAMILFIIFVLYVF 81 (88)
T ss_pred HhhhheeehH-HHHHHHHHHHHHHHHHHHhe
Confidence 4443444444 45565555555544443333
No 94
>PHA03281 envelope glycoprotein E; Provisional
Probab=48.54 E-value=25 Score=37.87 Aligned_cols=29 Identities=10% Similarity=0.025 Sum_probs=18.2
Q ss_pred CCCCCCccceEEEeehhhHHHHHHHHHHH
Q 020804 78 SNKGKHSNLILLFGIGTGLLITAIISVLI 106 (321)
Q Consensus 78 SsKkKklS~iaIVGIaVG~vilLLL~Vli 106 (321)
.+..-+...+++-|.++|+++.|+|.++.
T Consensus 549 ~~~p~~~y~~l~~~~a~~~ll~l~~~~~c 577 (642)
T PHA03281 549 GTFPFKRYAAITGGFAALALLCLAIALIC 577 (642)
T ss_pred CCCCeEeehhhhhhhHHHHHHHHHHHHHH
Confidence 33444555666778889988855555443
No 95
>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P.
Probab=48.39 E-value=5.6 Score=34.70 Aligned_cols=28 Identities=25% Similarity=0.342 Sum_probs=1.4
Q ss_pred EeehhhHHHHHHHHHHHhhheeecccCC
Q 020804 90 FGIGTGLLITAIISVLIICSCAFRRRNS 117 (321)
Q Consensus 90 VGIaVG~vilLLL~VliLcLC~~Rrkkk 117 (321)
+||++=++||.+|+++--.+|++|+..|
T Consensus 27 aGIGiL~VILgiLLliGCWYckRRSGYk 54 (118)
T PF14991_consen 27 AGIGILIVILGILLLIGCWYCKRRSGYK 54 (118)
T ss_dssp -SSS------------------------
T ss_pred ccceeHHHHHHHHHHHhheeeeecchhh
Confidence 4444444444444433334455554444
No 96
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=47.98 E-value=14 Score=43.04 Aligned_cols=14 Identities=29% Similarity=0.449 Sum_probs=6.3
Q ss_pred cccCceecCCCCCC
Q 020804 262 SAIPGRLYGGNPVD 275 (321)
Q Consensus 262 ~aipgr~yg~n~~d 275 (321)
|-|+||.----++|
T Consensus 380 npi~~~ql~~h~~d 393 (2365)
T COG5178 380 NPILGVQLDNHPYD 393 (2365)
T ss_pred cccccccccccccc
Confidence 44555544333333
No 97
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=47.95 E-value=11 Score=31.87 Aligned_cols=19 Identities=5% Similarity=-0.165 Sum_probs=7.8
Q ss_pred HHhhheeecccCCCCCCCc
Q 020804 105 LIICSCAFRRRNSKASPKE 123 (321)
Q Consensus 105 liLcLC~~Rrkkkka~~~~ 123 (321)
++-+++++.+||+++...+
T Consensus 16 ~asl~~wr~~~rq~k~~~~ 34 (107)
T PF15330_consen 16 AASLLAWRMKQRQKKAGQY 34 (107)
T ss_pred HHHHHHHHHHhhhccccCC
Confidence 3333444334444444444
No 98
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=47.80 E-value=8.3 Score=30.79 Aligned_cols=36 Identities=11% Similarity=0.126 Sum_probs=20.4
Q ss_pred cceEEEeehhhHHHHHHHHHHHhhheeecccCCCCCC
Q 020804 85 NLILLFGIGTGLLITAIISVLIICSCAFRRRNSKASP 121 (321)
Q Consensus 85 S~iaIVGIaVG~vilLLL~VliLcLC~~Rrkkkka~~ 121 (321)
+-++.|||+.|.++.++-+++ =...++|+.|||++.
T Consensus 31 ~qW~aIGvi~gi~~~~lt~lt-N~YFK~k~drr~~a~ 66 (68)
T PF04971_consen 31 SQWAAIGVIGGIFFGLLTYLT-NLYFKIKEDRRKAAR 66 (68)
T ss_pred ccchhHHHHHHHHHHHHHHHh-HhhhhhhHhhhHhhc
Confidence 457778777666655555533 334444555555544
No 99
>PF11669 WBP-1: WW domain-binding protein 1; InterPro: IPR021684 This family of proteins represents WBP-1, a ligand of the WW domain of Yes-associated protein. This protein has a proline-rich domain. WBP-1 does not bind to the SH3 domain [].
Probab=47.29 E-value=6.5 Score=32.66 Aligned_cols=14 Identities=36% Similarity=0.857 Sum_probs=6.2
Q ss_pred HHhhheeecccCCC
Q 020804 105 LIICSCAFRRRNSK 118 (321)
Q Consensus 105 liLcLC~~Rrkkkk 118 (321)
..+|+|.+||+|++
T Consensus 35 ~c~c~~~~~r~r~~ 48 (102)
T PF11669_consen 35 SCCCACRHRRRRRR 48 (102)
T ss_pred HHHHHHHHHHHHHh
Confidence 34444544444433
No 100
>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]
Probab=45.81 E-value=14 Score=41.28 Aligned_cols=19 Identities=16% Similarity=0.233 Sum_probs=9.5
Q ss_pred cceEEEeehhhHHHHHHHH
Q 020804 85 NLILLFGIGTGLLITAIIS 103 (321)
Q Consensus 85 S~iaIVGIaVG~vilLLL~ 103 (321)
.+.+|+|.++++++++||.
T Consensus 546 ~l~~i~g~~~~~v~~lll~ 564 (996)
T KOG0196|consen 546 QLPLIIGSILAGVVFLLLA 564 (996)
T ss_pred chhhHHHHHHHHHHHHHHH
Confidence 3445555555555544433
No 101
>PF14914 LRRC37AB_C: LRRC37A/B like protein 1 C-terminal domain
Probab=45.63 E-value=11 Score=34.22 Aligned_cols=31 Identities=26% Similarity=0.446 Sum_probs=15.3
Q ss_pred ceEEEeehhhHHH-HHHHHHHHhhheeecccC
Q 020804 86 LILLFGIGTGLLI-TAIISVLIICSCAFRRRN 116 (321)
Q Consensus 86 ~iaIVGIaVG~vi-lLLL~VliLcLC~~Rrkk 116 (321)
..+|++|.|-+++ +++++++++-.|+-||..
T Consensus 119 nklilaisvtvv~~iliii~CLiei~shr~a~ 150 (154)
T PF14914_consen 119 NKLILAISVTVVVMILIIIFCLIEICSHRRAS 150 (154)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 3467777776554 333333344445544443
No 102
>PF15099 PIRT: Phosphoinositide-interacting protein family
Probab=45.50 E-value=7.7 Score=34.30 Aligned_cols=14 Identities=29% Similarity=0.517 Sum_probs=6.0
Q ss_pred CCCccceEEEeehh
Q 020804 81 GKHSNLILLFGIGT 94 (321)
Q Consensus 81 kKklS~iaIVGIaV 94 (321)
+.+.+.+-++|.+.
T Consensus 74 n~~~si~~~~G~vl 87 (129)
T PF15099_consen 74 NSHGSIISIFGPVL 87 (129)
T ss_pred cCCcchhhhehHHH
Confidence 44444444444433
No 103
>PHA03291 envelope glycoprotein I; Provisional
Probab=45.25 E-value=30 Score=35.49 Aligned_cols=32 Identities=19% Similarity=0.278 Sum_probs=21.3
Q ss_pred CCCCccceEEEeehhhHHHHHHHHHHHhhheee
Q 020804 80 KGKHSNLILLFGIGTGLLITAIISVLIICSCAF 112 (321)
Q Consensus 80 KkKklS~iaIVGIaVG~vilLLL~VliLcLC~~ 112 (321)
..-+++..-||=|+|=+.++++|. +--|.||.
T Consensus 279 sr~~Lt~~qiiQiAIPasii~cV~-lGSC~Ccl 310 (401)
T PHA03291 279 SRYELTVTQIIQIAIPASIIACVF-LGSCACCL 310 (401)
T ss_pred hhhhhhhhhhheeccchHHHHHhh-hhhhhhhh
Confidence 344566777777888777777666 55566655
No 104
>PTZ00045 apical membrane antigen 1; Provisional
Probab=45.22 E-value=13 Score=39.89 Aligned_cols=36 Identities=14% Similarity=0.215 Sum_probs=19.0
Q ss_pred CccceEEEeehhhHHHHHHHHHHHhhheeecccCCCC
Q 020804 83 HSNLILLFGIGTGLLITAIISVLIICSCAFRRRNSKA 119 (321)
Q Consensus 83 klS~iaIVGIaVG~vilLLL~VliLcLC~~Rrkkkka 119 (321)
+.++++|+.|+++++++++|+ ++..+...|++..++
T Consensus 511 ~~~~~~i~iia~~~~~~~vl~-~~~~~~~~k~~~~~~ 546 (595)
T PTZ00045 511 KKKRILIIIIAATGAVVLVLL-AYFSYRYYRKKGNKD 546 (595)
T ss_pred cccceehhHHHHHHHHHHHHH-HHHHHHHhhccCCcc
Confidence 445777776766666544444 444444344444444
No 105
>PF01561 Hanta_G2: Hantavirus glycoprotein G2; InterPro: IPR002532 The medium (M) genome segment of Hantaviruses (family Bunyaviridae) encodes the two virion glycoproteins [], G1 and G2, as a polyprotein precursor. This entry represents the polyprotein region which forms the G2 glycoprotein.; GO: 0030683 evasion by virus of host immune response, 0044423 virion part
Probab=44.71 E-value=18 Score=37.68 Aligned_cols=26 Identities=12% Similarity=0.282 Sum_probs=12.9
Q ss_pred ehhhHHHHHHHHHHHhhheeecccCCC
Q 020804 92 IGTGLLITAIISVLIICSCAFRRRNSK 118 (321)
Q Consensus 92 IaVG~vilLLL~VliLcLC~~Rrkkkk 118 (321)
|+|+.+ ++|+.++++.|||-+|+.||
T Consensus 459 v~Vli~-lll~siil~s~~cP~r~~k~ 484 (485)
T PF01561_consen 459 VAVLIV-LLLLSIILFSFFCPVRKHKK 484 (485)
T ss_pred eehhHH-HHHHHHHHHheeCcchhccC
Confidence 444444 44444455555555554444
No 106
>TIGR03154 sulfolob_CbsA cytochrome b558/566, subunit A. Members of this protein family are CbsA, one subunit of a highly glycosylated, heterodimeric, mono-heme cytochrome b558/566, found in Sulfolobus acidocaldarius and several other members of the Sulfolobales, a branch of the Crenarchaeota.
Probab=44.54 E-value=82 Score=32.62 Aligned_cols=65 Identities=22% Similarity=0.189 Sum_probs=50.4
Q ss_pred ceeEEEEeeCceeeec--CCCCCcccccCccccccccCCCCCCCCCCCCeeEEEEeecCccEEEEEEe
Q 020804 136 EIRVLAEFKPGLITLD--GHADDWEDIDGSEFSLLPALDPHAEHEYKGGKMNVKALHDGHDVYFLLQV 201 (321)
Q Consensus 136 ~~~~~a~~~pg~~tld--g~~~dw~~i~~~~~~l~pal~~d~~~~y~~g~~~vk~~hdg~~~ffll~v 201 (321)
+-+|.|-+++|.+-|- |...=|+.|.=...+|.|-+- -++..=----+-|||+-.|-.||.|.+-
T Consensus 34 sp~I~aYkV~gsadl~nPGs~sfWs~IPw~nisL~~niP-~~ptSG~Thyv~VKAAWng~~ifiL~~w 100 (465)
T TIGR03154 34 SPQIPVYKVVGSADLSNPGSASYWSQIPWINISLTANIP-MAPTSGLTHYLLVKAAWNGSWIFILEEW 100 (465)
T ss_pred CCcceEEEeecccccCCCCccchhhcCCcccccccccCC-CCCCCCceeEEEEEeeccCceEEEEEec
Confidence 3578899999998885 788899999999999998874 2221111124779999999999999983
No 107
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=42.06 E-value=33 Score=34.34 Aligned_cols=61 Identities=28% Similarity=0.443 Sum_probs=45.6
Q ss_pred cCCCceeEEEEeeCceeeecCCCCCcccccCcccccccc-------------------CCCC-CCCCCCCCeeEEEEeec
Q 020804 132 ESDSEIRVLAEFKPGLITLDGHADDWEDIDGSEFSLLPA-------------------LDPH-AEHEYKGGKMNVKALHD 191 (321)
Q Consensus 132 ~~~~~~~~~a~~~pg~~tldg~~~dw~~i~~~~~~l~pa-------------------l~~d-~~~~y~~g~~~vk~~hd 191 (321)
..|.-+.|...--|+..+++|+.+--+.-.|+.|+|+|+ ||++ .+...+++.|.|.+.-|
T Consensus 260 r~Gq~a~I~~da~~~~~~~~G~v~~i~~~tg~~fsllp~~natgN~tkvvQRvPVrI~ld~~~~~~~~l~~g~sv~v~vd 339 (352)
T COG1566 260 RPGQPAEITLDAYPGNGVVEGIVEGIAPATGSAFSLLPAQNATGNWTKVVQRVPVRIELDPEPLDRHLLRGGLSVVVVVD 339 (352)
T ss_pred cCCCeEEEEEEcCCCceEEEEEEEEecCCcccccccCCCccCCCCEEEEEEeeeEEEEecCCchhcccccCceEEEEEeC
Confidence 344457777777788788888888888889999999997 5663 56666777777777654
Q ss_pred C
Q 020804 192 G 192 (321)
Q Consensus 192 g 192 (321)
-
T Consensus 340 ~ 340 (352)
T COG1566 340 T 340 (352)
T ss_pred C
Confidence 3
No 108
>PHA03273 envelope glycoprotein C; Provisional
Probab=41.31 E-value=27 Score=36.69 Aligned_cols=11 Identities=18% Similarity=0.380 Sum_probs=5.0
Q ss_pred ceEEEeehhhH
Q 020804 86 LILLFGIGTGL 96 (321)
Q Consensus 86 ~iaIVGIaVG~ 96 (321)
.+.||||+.|+
T Consensus 447 visivaV~~g~ 457 (486)
T PHA03273 447 LTSIIAVTCGA 457 (486)
T ss_pred EEEehHHHHHH
Confidence 34444555553
No 109
>PF13268 DUF4059: Protein of unknown function (DUF4059)
Probab=41.25 E-value=12 Score=30.26 Aligned_cols=30 Identities=20% Similarity=0.319 Sum_probs=20.3
Q ss_pred eehhhHHHHHHHHHHHhhheeecccCCCCC
Q 020804 91 GIGTGLLITAIISVLIICSCAFRRRNSKAS 120 (321)
Q Consensus 91 GIaVG~vilLLL~VliLcLC~~Rrkkkka~ 120 (321)
|+...++.+++++++|+.+...||+.|-+.
T Consensus 12 gL~ls~i~V~~~~~~wi~~Ra~~~~DKT~~ 41 (72)
T PF13268_consen 12 GLLLSSILVLLVSGIWILWRALRKKDKTAK 41 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCcHH
Confidence 345566677888888888877666655544
No 110
>PF11857 DUF3377: Domain of unknown function (DUF3377); InterPro: IPR021805 This domain is functionally uncharacterised and found at the C terminus of peptidases belonging to MEROPS peptidase family M10A, membrane-type matrix metallopeptidases (clan MA). ; GO: 0004222 metalloendopeptidase activity
Probab=40.72 E-value=41 Score=27.32 Aligned_cols=32 Identities=22% Similarity=0.304 Sum_probs=19.5
Q ss_pred ccceEEEeehhhHHHHHHHHHHHhhheeeccc
Q 020804 84 SNLILLFGIGTGLLITAIISVLIICSCAFRRR 115 (321)
Q Consensus 84 lS~iaIVGIaVG~vilLLL~VliLcLC~~Rrk 115 (321)
.++.-+++|++=.+++|++++++..++.||||
T Consensus 26 ~~~~~avaVviPl~L~LCiLvl~yai~~fkrk 57 (74)
T PF11857_consen 26 GGTVNAVAVVIPLVLLLCILVLIYAIFQFKRK 57 (74)
T ss_pred CCceeEEEEeHHHHHHHHHHHHHHHhheeeec
Confidence 34455555777777777776666666655543
No 111
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=40.26 E-value=6.5 Score=34.85 Aligned_cols=27 Identities=22% Similarity=0.460 Sum_probs=12.2
Q ss_pred ehhhHHHHHHHHHHHhhheeecccCCC
Q 020804 92 IGTGLLITAIISVLIICSCAFRRRNSK 118 (321)
Q Consensus 92 IaVG~vilLLL~VliLcLC~~Rrkkkk 118 (321)
|+++.+++++++++++...+.+|-+||
T Consensus 5 i~l~~l~iilli~~~~~~~kl~kl~r~ 31 (151)
T PF14584_consen 5 IGLLVLVIILLILIIILNIKLRKLKRR 31 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444445554544443
No 112
>PF14828 Amnionless: Amnionless
Probab=40.02 E-value=40 Score=34.49 Aligned_cols=24 Identities=21% Similarity=0.214 Sum_probs=16.8
Q ss_pred EEEeehhhHHHHHHHHHHHhhhee
Q 020804 88 LLFGIGTGLLITAIISVLIICSCA 111 (321)
Q Consensus 88 aIVGIaVG~vilLLL~VliLcLC~ 111 (321)
.|+|+++|.+++++|+++++.+-+
T Consensus 339 ~v~~~vl~~Lllv~ll~~~~ll~~ 362 (437)
T PF14828_consen 339 TVVGIVLGCLLLVALLFGVILLYR 362 (437)
T ss_pred eeeeehHHHHHHHHHHHHhheEEe
Confidence 688888888876666656554444
No 113
>PF12158 DUF3592: Protein of unknown function (DUF3592); InterPro: IPR021994 This family of proteins is functionally uncharacterised.This family of proteins is found in bacteria, archaea, eukaryotes and viruses. Proteins in this family are typically between 150 and 242 amino acids in length.
Probab=39.47 E-value=49 Score=26.85 Aligned_cols=19 Identities=16% Similarity=0.165 Sum_probs=13.5
Q ss_pred CCCCCCCCeeEEEEeecCcc
Q 020804 175 AEHEYKGGKMNVKALHDGHD 194 (321)
Q Consensus 175 ~~~~y~~g~~~vk~~hdg~~ 194 (321)
..+.|+-|+ +|.+.+|-+|
T Consensus 88 ~~~~~~~G~-~V~V~Y~P~~ 106 (148)
T PF12158_consen 88 YWPKYPIGD-TVTVYYNPNN 106 (148)
T ss_pred CCccCCCcC-EEEEEECCcC
Confidence 344588888 8888888764
No 114
>PRK08455 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=38.59 E-value=44 Score=30.28 Aligned_cols=23 Identities=17% Similarity=0.270 Sum_probs=11.2
Q ss_pred CCCCeeEEEEeecCccEEEEEEe
Q 020804 179 YKGGKMNVKALHDGHDVYFLLQV 201 (321)
Q Consensus 179 y~~g~~~vk~~hdg~~~ffll~v 201 (321)
|+=..++|-..-++..-|+-++|
T Consensus 87 ~~L~~fvVNL~~~~~~ryLkv~i 109 (182)
T PRK08455 87 YPLDPFTVNLLSQSGRRYLKTSI 109 (182)
T ss_pred EecCCEEEEccCCCCceEEEEEE
Confidence 33344666655555444444433
No 115
>PF02038 ATP1G1_PLM_MAT8: ATP1G1/PLM/MAT8 family; InterPro: IPR000272 The FXYD protein family contains at least seven members in mammals []. Two other family members that are not obvious orthologs of any identified mammalian FXYD protein exist in zebrafish. All these proteins share a signature sequence of six conserved amino acids comprising the FXYD motif in the NH2-terminus, and two glycines and one serine residue in the transmembrane domain. FXYD proteins are widely distributed in mammalian tissues with prominent expression in tissues that perform fluid and solute transport or that are electrically excitable. Initial functional characterisation suggested that FXYD proteins act as channels or as modulators of ion channels however studies have revealed that most FXYD proteins have another specific function and act as tissue-specific regulatory subunits of the Na,K-ATPase. Each of these auxiliary subunits produces a distinct functional effect on the transport characteristics of the Na,K-ATPase that is adjusted to the specific functional demands of the tissue in which the FXYD protein is expressed. FXYD proteins appear to preferentially associate with Na,K-ATPase alpha1-beta isozymes, and affect their function in a way that render them operationally complementary or supplementary to coexisting isozymes.; GO: 0005216 ion channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2JO1_A 2JP3_A 2ZXE_G 3A3Y_G 3N23_E 3B8E_H 3KDP_G 3N2F_E.
Probab=38.30 E-value=11 Score=28.58 Aligned_cols=6 Identities=0% Similarity=-0.330 Sum_probs=2.2
Q ss_pred ehhhHH
Q 020804 92 IGTGLL 97 (321)
Q Consensus 92 IaVG~v 97 (321)
++.+++
T Consensus 19 Li~A~v 24 (50)
T PF02038_consen 19 LIFAGV 24 (50)
T ss_dssp HHHHHH
T ss_pred hHHHHH
Confidence 333333
No 116
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=37.66 E-value=8.7 Score=33.27 Aligned_cols=42 Identities=19% Similarity=0.305 Sum_probs=18.2
Q ss_pred CCCCccceEE-EeehhhHHHHHHHHHHHhhheeecccCCCCCCC
Q 020804 80 KGKHSNLILL-FGIGTGLLITAIISVLIICSCAFRRRNSKASPK 122 (321)
Q Consensus 80 KkKklS~iaI-VGIaVG~vilLLL~VliLcLC~~Rrkkkka~~~ 122 (321)
+=.....++| +|+++|. +++||++.+++.++++|.+.-..+.
T Consensus 60 ~fs~~~i~~Ii~gv~aGv-Ig~Illi~y~irR~~Kk~~~~~~p~ 102 (122)
T PF01102_consen 60 RFSEPAIIGIIFGVMAGV-IGIILLISYCIRRLRKKSSSDVQPL 102 (122)
T ss_dssp SSS-TCHHHHHHHHHHHH-HHHHHHHHHHHHHHS----------
T ss_pred CccccceeehhHHHHHHH-HHHHHHHHHHHHHHhccCCCCCCCC
Confidence 3333344555 5555555 5566666777787777765554443
No 117
>KOG3884 consensus Neural proliferation, differentiation and control protein [Signal transduction mechanisms]
Probab=37.54 E-value=34 Score=35.19 Aligned_cols=40 Identities=15% Similarity=0.272 Sum_probs=22.8
Q ss_pred ccceEEEeehhhHHHHHHHHHHHhhheeecccCCCCCCCccc
Q 020804 84 SNLILLFGIGTGLLITAIISVLIICSCAFRRRNSKASPKETE 125 (321)
Q Consensus 84 lS~iaIVGIaVG~vilLLL~VliLcLC~~Rrkkkka~~~~~~ 125 (321)
+|...|++.++|+.+++ +|-.||+|+.+++.|...+.+-|
T Consensus 294 ~~svlIla~v~~v~aa~--~Vg~la~g~~~~~nR~~~~aD~e 333 (437)
T KOG3884|consen 294 SSSVLILAAVGTVMAAG--LVGTLAGGTYYYKNRTETPADGE 333 (437)
T ss_pred cchHHHHHHHHHHHHHH--HHHHhhhhheeeccccccccccc
Confidence 34455654444433333 33567888887777766666544
No 118
>PF12259 DUF3609: Protein of unknown function (DUF3609); InterPro: IPR022048 This domain family is found in eukaryotes and viruses, and is typically between 348 and 360 amino acids in length.
Probab=36.43 E-value=33 Score=34.37 Aligned_cols=29 Identities=14% Similarity=0.160 Sum_probs=13.4
Q ss_pred EEEeehhhHHHHHHHHHHHhhheeecccCC
Q 020804 88 LLFGIGTGLLITAIISVLIICSCAFRRRNS 117 (321)
Q Consensus 88 aIVGIaVG~vilLLL~VliLcLC~~Rrkkk 117 (321)
+++ .+.|.+++++|++.+.+|+++.+||+
T Consensus 299 ~~i-~v~~~~vli~vl~~~~~~~~~~~~~~ 327 (361)
T PF12259_consen 299 VHI-AVCGAIVLIIVLISLAWLYRTFRRRQ 327 (361)
T ss_pred EEE-ehhHHHHHHHHHHHHHhheeehHHHH
Confidence 444 34444444444445555555533333
No 119
>PF13567 DUF4131: Domain of unknown function (DUF4131)
Probab=36.41 E-value=19 Score=28.61 Aligned_cols=19 Identities=26% Similarity=0.459 Sum_probs=7.9
Q ss_pred ceeeecCCCCCcccccCcc
Q 020804 146 GLITLDGHADDWEDIDGSE 164 (321)
Q Consensus 146 g~~tldg~~~dw~~i~~~~ 164 (321)
..+|+-|-..+-..+++..
T Consensus 76 ~~~~v~g~V~~~~~~~~~~ 94 (176)
T PF13567_consen 76 KEVTVQGTVESVPQIDGRG 94 (176)
T ss_pred ceEEEEEEEcccccccCce
Confidence 3444444444444444333
No 120
>PHA03282 envelope glycoprotein E; Provisional
Probab=36.31 E-value=25 Score=37.20 Aligned_cols=35 Identities=26% Similarity=0.289 Sum_probs=20.8
Q ss_pred ceEEEeehhhHHHHHHHHHHHhhheeecccCCCCCCC
Q 020804 86 LILLFGIGTGLLITAIISVLIICSCAFRRRNSKASPK 122 (321)
Q Consensus 86 ~iaIVGIaVG~vilLLL~VliLcLC~~Rrkkkka~~~ 122 (321)
..+++|.++|-. ++-+.+|.|+-|+|+|.=+++.+
T Consensus 410 l~~vlGaalgLa--v~glsvw~C~~c~r~ra~~avk~ 444 (540)
T PHA03282 410 LVGVLGAALGLA--AAGLSVWACVTCRRARAWRAVKS 444 (540)
T ss_pred hHHHHHHHHHHH--HHHhhheeeeeehhhhhhhcccC
Confidence 344444444433 22334689998888777676665
No 121
>PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites []. EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection.
Probab=36.02 E-value=24 Score=33.34 Aligned_cols=26 Identities=23% Similarity=0.370 Sum_probs=13.5
Q ss_pred cceEEEeehhhHHHHHHHHHHHhhhee
Q 020804 85 NLILLFGIGTGLLITAIISVLIICSCA 111 (321)
Q Consensus 85 S~iaIVGIaVG~vilLLL~VliLcLC~ 111 (321)
-.+.|+||+.|++++.+|+ ++..+|.
T Consensus 184 ~v~~i~~Vi~g~~~~g~~~-~i~alc~ 209 (211)
T PF02124_consen 184 MVISIIGVICGAGALGLLV-LIAALCF 209 (211)
T ss_pred EEEehHHHHHHHHHHHHHH-hhEEEEE
Confidence 3555666666665544333 4444554
No 122
>PF04639 Baculo_E56: Baculoviral E56 protein, specific to ODV envelope; InterPro: IPR006733 This family represents the E56 protein, which is localized to the occlusion derived virus (ODV) envelope, but not to the budded virus (BV) envelope []. Signals necessary for transport and/or retention into this structure are believed to be found within the C-terminal portion of ODV-E56.; GO: 0019031 viral envelope
Probab=35.77 E-value=14 Score=36.74 Aligned_cols=24 Identities=25% Similarity=0.315 Sum_probs=12.4
Q ss_pred CCCCCCCCCccceEEEeehhhHHHH
Q 020804 75 SSTSNKGKHSNLILLFGIGTGLLIT 99 (321)
Q Consensus 75 SssSsKkKklS~iaIVGIaVG~vil 99 (321)
|+++++.-+.+..-|| +++|++++
T Consensus 266 SSnss~S~s~~l~pii-l~IG~vl~ 289 (305)
T PF04639_consen 266 SSNSSKSVSDSLLPII-LIIGGVLL 289 (305)
T ss_pred ccCccchhhhhhhHHH-HHHHHHHH
Confidence 3344444444555556 66666643
No 123
>TIGR03154 sulfolob_CbsA cytochrome b558/566, subunit A. Members of this protein family are CbsA, one subunit of a highly glycosylated, heterodimeric, mono-heme cytochrome b558/566, found in Sulfolobus acidocaldarius and several other members of the Sulfolobales, a branch of the Crenarchaeota.
Probab=35.56 E-value=54 Score=33.88 Aligned_cols=12 Identities=17% Similarity=0.238 Sum_probs=5.4
Q ss_pred ehhhHHHHHHHH
Q 020804 92 IGTGLLITAIIS 103 (321)
Q Consensus 92 IaVG~vilLLL~ 103 (321)
-++|.+|+++.+
T Consensus 445 TVaGVvIAiVAL 456 (465)
T TIGR03154 445 TIIGVVIAIVAL 456 (465)
T ss_pred EeehhHHHHHHH
Confidence 444555444333
No 124
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=34.97 E-value=30 Score=24.75 Aligned_cols=11 Identities=45% Similarity=0.616 Sum_probs=4.5
Q ss_pred hheeecccCCC
Q 020804 108 CSCAFRRRNSK 118 (321)
Q Consensus 108 cLC~~Rrkkkk 118 (321)
++-.+|+++||
T Consensus 26 ~~w~~~~~~k~ 36 (49)
T PF05545_consen 26 VIWAYRPRNKK 36 (49)
T ss_pred HHHHHcccchh
Confidence 33333444443
No 125
>PHA03049 IMV membrane protein; Provisional
Probab=33.54 E-value=33 Score=27.56 Aligned_cols=32 Identities=28% Similarity=0.364 Sum_probs=19.1
Q ss_pred hhHHHHHHHHHHHhhheeecccCCCCCCCccc
Q 020804 94 TGLLITAIISVLIICSCAFRRRNSKASPKETE 125 (321)
Q Consensus 94 VG~vilLLL~VliLcLC~~Rrkkkka~~~~~~ 125 (321)
+|-++++++||+++.|..--=-+||+.+.++.
T Consensus 2 I~d~~l~iICVaIi~lIvYgiYnkk~~~q~~~ 33 (68)
T PHA03049 2 IGDIILVIICVVIIGLIVYGIYNKKTTTSQNP 33 (68)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcccccCCCC
Confidence 45667777777766666554444555555544
No 126
>PF06040 Adeno_E3: Adenovirus E3 protein; InterPro: IPR009266 This family consists of several Adenovirus E3 proteins. The E3 protein does not seem to be essential for virus replication in cultured cells suggesting that the protein may function in virus-host interactions [].
Probab=32.37 E-value=21 Score=31.51 Aligned_cols=29 Identities=21% Similarity=0.408 Sum_probs=14.2
Q ss_pred eEEEeehhhHHHHHHHH------HHHhhheeeccc
Q 020804 87 ILLFGIGTGLLITAIIS------VLIICSCAFRRR 115 (321)
Q Consensus 87 iaIVGIaVG~vilLLL~------VliLcLC~~Rrk 115 (321)
.+|+|+++|+.|++|-- +-+.+|||+-||
T Consensus 89 ~l~LGvV~GG~i~vLcylylPC~~~l~v~~cW~k~ 123 (127)
T PF06040_consen 89 YLILGVVAGGLIAVLCYLYLPCWVELVVLICWFKK 123 (127)
T ss_pred hhhHHHHhccHHHHHHHHhccHHHhhhhheeeeec
Confidence 34455666666544411 224556665443
No 127
>PHA03286 envelope glycoprotein E; Provisional
Probab=32.35 E-value=14 Score=38.65 Aligned_cols=28 Identities=18% Similarity=0.347 Sum_probs=11.9
Q ss_pred eehhhHHHH-HHHHHHHhhheeecccCCC
Q 020804 91 GIGTGLLIT-AIISVLIICSCAFRRRNSK 118 (321)
Q Consensus 91 GIaVG~vil-LLL~VliLcLC~~Rrkkkk 118 (321)
-+++|++++ +++.+++.||.++||+.|+
T Consensus 395 s~~~~~~~~~~~~~~~~~~~~~r~~~~r~ 423 (492)
T PHA03286 395 SMAAGAILVVLLFALCIAGLYRRRRRHRT 423 (492)
T ss_pred HHHHHHHHHHHHHHHHhHhHhhhhhhhhc
Confidence 344455443 3333344455444433333
No 128
>PF02430 AMA-1: Apical membrane antigen 1; InterPro: IPR003298 A novel antigen of Plasmodium falciparum has been cloned that contains a hydrophobic domain typical of an integral membrane protein. The antigen is designated apical membrane antigen 1 (AMA-1) by virtue of appearing to be located in the apical complex []. AMA-1 appears to be transported to the merozoite surface close to the time of schizont rupture. The 66kDa merozoite surface antigen (PK66) of Plasmodium knowlesi, a simian malaria, possesses vaccine-related properties believed to originate from a receptor-like role in parasite invasion of erythrocytes []. The sequence of PK66 is conserved throughout plasmodium, and shows high similarity to P. falciparum AMA-1. Following schizont rupture, the distribution of PK66 changes in a coordinate manner associated with merozoite invasion. Prior to rupture, the protein is concentrated at the apical end, following which it distributes itself entirely across the surface of the free merozoite. Immunofluorescence studies suggest that, during invasion, PK66 is excluded from the erythrocyte at, and behind, the invasion interface []. ; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2Y8R_D 2X2Z_A 2Y8T_A 2Y8S_D 1HN6_A 2Z8V_B 2Z8W_A 1Z40_E 2Q8B_A 2Q8A_A ....
Probab=31.51 E-value=16 Score=38.22 Aligned_cols=32 Identities=3% Similarity=0.010 Sum_probs=0.0
Q ss_pred ceEEEeehhhHHHHHHHHHHHhhheeecccCC
Q 020804 86 LILLFGIGTGLLITAIISVLIICSCAFRRRNS 117 (321)
Q Consensus 86 ~iaIVGIaVG~vilLLL~VliLcLC~~Rrkkk 117 (321)
+++|+.++.++++||+|++.|++=|.++-||+
T Consensus 429 ~~~~~~~~~~~~~~~~l~~~~~~k~~~~~kk~ 460 (471)
T PF02430_consen 429 RIVIIISIATGAVLLALAIYWYYKRLWKTKKK 460 (471)
T ss_dssp --------------------------------
T ss_pred eeehhhHHHHHHHHHHHHHHHHHhhhhccccC
Confidence 44554444455555555556665555444333
No 129
>PF12669 P12: Virus attachment protein p12 family
Probab=31.43 E-value=32 Score=26.09 Aligned_cols=6 Identities=17% Similarity=0.230 Sum_probs=2.4
Q ss_pred cccCCC
Q 020804 113 RRRNSK 118 (321)
Q Consensus 113 Rrkkkk 118 (321)
.|++|+
T Consensus 21 ~k~~K~ 26 (58)
T PF12669_consen 21 IKDKKK 26 (58)
T ss_pred HHHhhc
Confidence 344443
No 130
>PF00974 Rhabdo_glycop: Rhabdovirus spike glycoprotein; InterPro: IPR001903 Different families of ssRNA negative-strand viruses contain glycoproteins responsible for forming spikes on the surface of the virion. The glycoprotein spike is made up of a trimer of glycoproteins. These proteins are frequently abbreviated to G protein. Channel formed by glycoprotein spike is thought to function in a similar manner to Influenza virus M2 protein channel, thus allowing a signal to pass across the viral membrane to signal for viral uncoating [, ].; GO: 0019031 viral envelope; PDB: 2CMZ_C 2J6J_A 3EGD_D.
Probab=31.21 E-value=16 Score=37.79 Aligned_cols=14 Identities=7% Similarity=0.071 Sum_probs=0.0
Q ss_pred eecccCCCCCCCcc
Q 020804 111 AFRRRNSKASPKET 124 (321)
Q Consensus 111 ~~Rrkkkka~~~~~ 124 (321)
++|.+||+..+.+.
T Consensus 481 ~~~~~~~~~i~~~~ 494 (501)
T PF00974_consen 481 RRRPKRKRGIYESK 494 (501)
T ss_dssp --------------
T ss_pred ccccccCCcccccc
Confidence 33444444444433
No 131
>PF15050 SCIMP: SCIMP protein
Probab=30.41 E-value=21 Score=31.74 Aligned_cols=11 Identities=18% Similarity=1.056 Sum_probs=6.2
Q ss_pred HHHHHhhheee
Q 020804 102 ISVLIICSCAF 112 (321)
Q Consensus 102 L~VliLcLC~~ 112 (321)
|.+|+.|+|++
T Consensus 23 lglIlyCvcR~ 33 (133)
T PF15050_consen 23 LGLILYCVCRW 33 (133)
T ss_pred HHHHHHHHHHH
Confidence 44455666665
No 132
>PHA03290 envelope glycoprotein I; Provisional
Probab=30.13 E-value=71 Score=32.51 Aligned_cols=20 Identities=15% Similarity=0.212 Sum_probs=10.2
Q ss_pred ceEEEeehhhHHHHHHHHHH
Q 020804 86 LILLFGIGTGLLITAIISVL 105 (321)
Q Consensus 86 ~iaIVGIaVG~vilLLL~Vl 105 (321)
..++|.|-+.+++++||.|+
T Consensus 271 ~~~~ivipi~~~llilla~i 290 (357)
T PHA03290 271 DNFLIAIPITASLLIILAII 290 (357)
T ss_pred ceEEEEehHHHHHHHHHHHH
Confidence 34445566665554444433
No 133
>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P.
Probab=29.67 E-value=12 Score=32.70 Aligned_cols=25 Identities=16% Similarity=0.264 Sum_probs=2.7
Q ss_pred ehhhHHHHHHHHHHHhhheee-cccC
Q 020804 92 IGTGLLITAIISVLIICSCAF-RRRN 116 (321)
Q Consensus 92 IaVG~vilLLL~VliLcLC~~-Rrkk 116 (321)
=++|++++++|+.++|++=|| .|||
T Consensus 25 EAaGIGiL~VILgiLLliGCWYckRR 50 (118)
T PF14991_consen 25 EAAGIGILIVILGILLLIGCWYCKRR 50 (118)
T ss_dssp ---SSS--------------------
T ss_pred HhccceeHHHHHHHHHHHhheeeeec
Confidence 688988866666555555443 3443
No 134
>PTZ00214 high cysteine membrane protein Group 4; Provisional
Probab=29.46 E-value=7.1 Score=42.74 Aligned_cols=28 Identities=7% Similarity=-0.083 Sum_probs=18.5
Q ss_pred CCCCCccceEEEeehhhHHHHHHHHHHH
Q 020804 79 NKGKHSNLILLFGIGTGLLITAIISVLI 106 (321)
Q Consensus 79 sKkKklS~iaIVGIaVG~vilLLL~Vli 106 (321)
+.++++++.+|+||+|-+++++.++|-+
T Consensus 770 ~~~~~~~~~~i~~~~v~~~~vv~~lvg~ 797 (800)
T PTZ00214 770 KELAKKRTAAIAGGTVAGVLVIGVLVGF 797 (800)
T ss_pred ccccccccceeEEEEEEEeeeeeeeeeE
Confidence 3456788899998887766554444333
No 135
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=29.31 E-value=42 Score=26.14 Aligned_cols=19 Identities=32% Similarity=0.548 Sum_probs=9.9
Q ss_pred ehhhHHHHHHHHHHHhhhe
Q 020804 92 IGTGLLITAIISVLIICSC 110 (321)
Q Consensus 92 IaVG~vilLLL~VliLcLC 110 (321)
++++++++++++++++.+|
T Consensus 70 ~i~~~iv~~~~~~i~~~~~ 88 (89)
T PF00957_consen 70 IIIIIIVIIIILIIIIVIC 88 (89)
T ss_dssp HHHHHHHHHHHHHHHHTT-
T ss_pred HhHHhhhhhhhhHHHHHHh
Confidence 4455555555555555555
No 136
>PF07215 DUF1419: Protein of unknown function (DUF1419); InterPro: IPR009862 This family consists of several bacterial proteins of around 110 residues in length. Members of this family seem to be specific to Agrobacterium species and to Rhizobium loti (Mesorhizobium loti). The function of this family is unknown.
Probab=28.76 E-value=50 Score=28.68 Aligned_cols=38 Identities=32% Similarity=0.631 Sum_probs=28.6
Q ss_pred ccccccCCCCC----CCCCCCCeeEEEEeecCccEEEEEEecCceeeecC
Q 020804 165 FSLLPALDPHA----EHEYKGGKMNVKALHDGHDVYFLLQVDGEYVYSKG 210 (321)
Q Consensus 165 ~~l~pal~~d~----~~~y~~g~~~vk~~hdg~~~ffll~v~g~y~~~~~ 210 (321)
|-+||-|.=-. -.||..|.+| .|||-|.|+|..+|=.+
T Consensus 57 leiLPPL~~rg~mFamrEf~tgsVT--------SVFf~l~Idg~~R~Fhg 98 (111)
T PF07215_consen 57 LEILPPLWMRGDMFAMREFLTGSVT--------SVFFALRIDGRIRYFHG 98 (111)
T ss_pred HhhCCchheecchhhhhhhccCCee--------eEEEEEEECCceeEEEE
Confidence 56677665433 3688889987 69999999999888543
No 137
>PLN03148 Blue copper-like protein; Provisional
Probab=28.73 E-value=92 Score=28.43 Aligned_cols=6 Identities=0% Similarity=0.169 Sum_probs=3.1
Q ss_pred eeeccc
Q 020804 27 KVHFDS 32 (321)
Q Consensus 27 KVqlns 32 (321)
.|+|+.
T Consensus 89 ~v~L~~ 94 (167)
T PLN03148 89 FIPLNK 94 (167)
T ss_pred EEEecC
Confidence 455554
No 138
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=28.23 E-value=36 Score=27.41 Aligned_cols=23 Identities=4% Similarity=0.017 Sum_probs=15.0
Q ss_pred hHHHHHHHHHHHhhheeecccCC
Q 020804 95 GLLITAIISVLIICSCAFRRRNS 117 (321)
Q Consensus 95 G~vilLLL~VliLcLC~~Rrkkk 117 (321)
-++++++|..+||+|-.+.|+|+
T Consensus 10 livf~ifVap~WL~lHY~sk~~~ 32 (75)
T PF06667_consen 10 LIVFMIFVAPIWLILHYRSKWKS 32 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHhccc
Confidence 34556777778888877654443
No 139
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=26.89 E-value=21 Score=29.24 Aligned_cols=34 Identities=9% Similarity=0.249 Sum_probs=14.8
Q ss_pred ccceEEEeehhhHHHHHHHHHHHhhheeecccCC
Q 020804 84 SNLILLFGIGTGLLITAIISVLIICSCAFRRRNS 117 (321)
Q Consensus 84 lS~iaIVGIaVG~vilLLL~VliLcLC~~Rrkkk 117 (321)
+..++|++++|..++.+++-.+.+..|++.||.|
T Consensus 4 l~i~~iialiv~~iiaIvvW~iv~ieYrk~~rqr 37 (81)
T PF00558_consen 4 LEILAIIALIVALIIAIVVWTIVYIEYRKIKRQR 37 (81)
T ss_dssp ----HHHHHHHHHHHHHHHHHHH-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457788888888887777667666666644433
No 140
>PTZ00234 variable surface protein Vir12; Provisional
Probab=26.72 E-value=31 Score=35.45 Aligned_cols=6 Identities=17% Similarity=0.169 Sum_probs=2.7
Q ss_pred ceEEEe
Q 020804 86 LILLFG 91 (321)
Q Consensus 86 ~iaIVG 91 (321)
+-+|+|
T Consensus 365 rniim~ 370 (433)
T PTZ00234 365 RHSIVG 370 (433)
T ss_pred HHHHHH
Confidence 444444
No 141
>KOG3540 consensus Beta amyloid precursor protein [General function prediction only]
Probab=26.38 E-value=25 Score=37.48 Aligned_cols=29 Identities=10% Similarity=0.130 Sum_probs=20.1
Q ss_pred CccceEEEeehhhHHHHHHHHHHHhhhee
Q 020804 83 HSNLILLFGIGTGLLITAIISVLIICSCA 111 (321)
Q Consensus 83 klS~iaIVGIaVG~vilLLL~VliLcLC~ 111 (321)
..|..+|+|+.+++++++-||||-+++.+
T Consensus 544 ~~s~~av~gllv~~~~i~tvivisl~mlr 572 (615)
T KOG3540|consen 544 GRSASAVIGLLVSAVFIATVIVISLVMLR 572 (615)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34567788888888777777766665544
No 142
>PF11770 GAPT: GRB2-binding adapter (GAPT); InterPro: IPR021082 This entry represents a family of transmembrane proteins which bind the growth factor receptor-bound protein 2 (GRB2) in B cells []. In contrast to other transmembrane adaptor proteins, GAPT, which this entry represents, is not phosphorylated upon BCR ligation. It associates with GRB2 constitutively through its proline-rich region [].
Probab=25.84 E-value=41 Score=30.73 Aligned_cols=16 Identities=13% Similarity=0.331 Sum_probs=9.4
Q ss_pred EeehhhHHHHHHHHHH
Q 020804 90 FGIGTGLLITAIISVL 105 (321)
Q Consensus 90 VGIaVG~vilLLL~Vl 105 (321)
++|+||..+++||+++
T Consensus 10 v~i~igi~Ll~lLl~c 25 (158)
T PF11770_consen 10 VAISIGISLLLLLLLC 25 (158)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4567777765555544
No 143
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=25.74 E-value=87 Score=26.55 Aligned_cols=77 Identities=14% Similarity=0.248 Sum_probs=43.9
Q ss_pred EeeCceeeec-CCCCCcccccCccc-cccccCCCCCCCCCCCCeeEEEEeecCccEEEEEEecCceeeecCCcccCCcee
Q 020804 142 EFKPGLITLD-GHADDWEDIDGSEF-SLLPALDPHAEHEYKGGKMNVKALHDGHDVYFLLQVDGEYVYSKGENTRCPSIA 219 (321)
Q Consensus 142 ~~~pg~~tld-g~~~dw~~i~~~~~-~l~pal~~d~~~~y~~g~~~vk~~hdg~~~ffll~v~g~y~~~~~~~~~c~sva 219 (321)
-|.|..||+. |...-|.-.++..- ...+.+.|+....+..+. |..+=+-|+-+|.|.|.=. -|.=.-|-
T Consensus 11 ~F~P~~v~V~~GdTV~f~n~d~~Hnv~~~~~~~p~g~~~~~s~~--------g~~~~~tF~~~G~Y~Y~C~-pH~~~GM~ 81 (116)
T TIGR02375 11 VFEPAYIRAAPGDTVTFVPTDKGHNVETIKGMIPEGAEAFKSKI--------NEEYTVTVTEEGVYGVKCT-PHYGMGMV 81 (116)
T ss_pred EEeCCEEEECCCCEEEEEECCCCeeEEEccCCCcCCcccccCCC--------CCEEEEEeCCCEEEEEEcC-CCccCCCE
Confidence 5788888875 66666654433222 222445666666666432 5556677788999999743 22111144
Q ss_pred eeeeecCC
Q 020804 220 LMFQIGED 227 (321)
Q Consensus 220 lmf~~g~~ 227 (321)
--..||+.
T Consensus 82 G~V~Vg~~ 89 (116)
T TIGR02375 82 ALIQVGDP 89 (116)
T ss_pred EEEEECCC
Confidence 44556664
No 144
>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]
Probab=25.55 E-value=31 Score=37.91 Aligned_cols=28 Identities=25% Similarity=0.294 Sum_probs=12.9
Q ss_pred ehhhHHHHHHHHHHHhhheeecccCCCCC
Q 020804 92 IGTGLLITAIISVLIICSCAFRRRNSKAS 120 (321)
Q Consensus 92 IaVG~vilLLL~VliLcLC~~Rrkkkka~ 120 (321)
|.+.+.+++++| +.+||.++||.+-||+
T Consensus 396 ~f~~if~iva~i-i~~~L~R~rr~~~ka~ 423 (807)
T KOG1094|consen 396 IFVAIFLIVALI-IALMLWRWRRLLSKAS 423 (807)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHhhhc
Confidence 444443333333 4555555555555443
No 145
>KOG1219 consensus Uncharacterized conserved protein, contains laminin, cadherin and EGF domains [Signal transduction mechanisms]
Probab=25.34 E-value=53 Score=41.33 Aligned_cols=27 Identities=22% Similarity=0.154 Sum_probs=11.9
Q ss_pred ceEEEeehhhHHHHHHHHHHHhhheeec
Q 020804 86 LILLFGIGTGLLITAIISVLIICSCAFR 113 (321)
Q Consensus 86 ~iaIVGIaVG~vilLLL~VliLcLC~~R 113 (321)
+.=+|+|+|-. ++++++++++++||++
T Consensus 3992 kaEli~I~V~l-~~ifilvvlf~~crKk 4018 (4289)
T KOG1219|consen 3992 KAELIIIIVLL-ALIFILVVLFWKCRKK 4018 (4289)
T ss_pred ccceeehhHHH-HHHHHHHHHHHhhhhh
Confidence 33445444322 2334444455555543
No 146
>PHA03270 envelope glycoprotein C; Provisional
Probab=25.33 E-value=25 Score=36.68 Aligned_cols=11 Identities=9% Similarity=0.111 Sum_probs=7.5
Q ss_pred eceEEEEEEec
Q 020804 36 GDYKLLNFTWF 46 (321)
Q Consensus 36 GDYkVINVTwF 46 (321)
..|+-.-+-|.
T Consensus 393 ~eYTCrl~GYP 403 (466)
T PHA03270 393 SEYTCRLVGYP 403 (466)
T ss_pred ceEEEEEeecC
Confidence 47777777775
No 147
>cd01324 cbb3_Oxidase_CcoQ Cytochrome cbb oxidase CcoQ. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Found exclusively in proteobacteria, cbb3 is believed to be a modern enzyme that has evolved independently to perform a specialized function in microaerobic energy metabolism. The cbb3 operon contains four genes (ccoNOQP or fixNOQP), with ccoN coding for subunit I. Instead of a CuA-containing subunit II analogous to other cytochrome oxidases, cbb3 utilizes subunits ccoO and ccoP, which contain one and two hemes, respectively, to transfer electrons to the binuclear center. ccoQ, the fourth subunit, is a single transmembrane helix protein. It has been shown to protect the core complex from proteolytic degradation by serine proteases. See cd00919, cd01322
Probab=25.21 E-value=50 Score=24.24 Aligned_cols=18 Identities=33% Similarity=0.351 Sum_probs=9.2
Q ss_pred HHHHHhhheeecccCCCC
Q 020804 102 ISVLIICSCAFRRRNSKA 119 (321)
Q Consensus 102 L~VliLcLC~~Rrkkkka 119 (321)
++.+.+++..+|+++||+
T Consensus 21 ~~Figiv~wa~~p~~k~~ 38 (48)
T cd01324 21 LFFLGVVVWAFRPGRKKA 38 (48)
T ss_pred HHHHHHHHHHhCCCcchh
Confidence 334445555556555554
No 148
>PF01690 PLRV_ORF5: Potato leaf roll virus readthrough protein; InterPro: IPR002929 This family consists mainly of the Potato leafroll virus (PLrV) read through protein otherwise known as the minor capsid protein. This is generated via a readthrough of open reading frame 3, the coat protein, allowing transcription of open reading frame 5 to give an extended coat protein with a large C-terminal addition or read through domain []. The read through protein is essential for the circulative aphid transmission of PLrV [] and Beet western yellows virus []. The N-terminal region of the luteovirus readthrough domain determines virus binding to Buchnera GroEL and is essential for virus persistence in the aphid [].; GO: 0019028 viral capsid
Probab=24.30 E-value=59 Score=34.11 Aligned_cols=13 Identities=46% Similarity=1.053 Sum_probs=5.8
Q ss_pred ceeeecCCC-CCcc
Q 020804 146 GLITLDGHA-DDWE 158 (321)
Q Consensus 146 g~~tldg~~-~dw~ 158 (321)
|.|--|-.. +-|.
T Consensus 126 GlIAY~~~~~~~Wn 139 (465)
T PF01690_consen 126 GLIAYDNSSSDGWN 139 (465)
T ss_pred eeEEecCccccccc
Confidence 444444444 4443
No 149
>KOG2052 consensus Activin A type IB receptor, serine/threonine protein kinase [Signal transduction mechanisms]
Probab=23.10 E-value=61 Score=34.36 Aligned_cols=26 Identities=12% Similarity=0.155 Sum_probs=15.9
Q ss_pred ceEEEeehhhHHHHHHHHHHHhhhee
Q 020804 86 LILLFGIGTGLLITAIISVLIICSCA 111 (321)
Q Consensus 86 ~iaIVGIaVG~vilLLL~VliLcLC~ 111 (321)
..-+++|++|.++++++++++.++-+
T Consensus 130 ~~~~~~ii~~~~~~~~~~~~~~~~~~ 155 (513)
T KOG2052|consen 130 PVELVAIILGPVVFLLLIAILTVLGC 155 (513)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhee
Confidence 44456677888876666655553333
No 150
>KOG1024 consensus Receptor-like protein tyrosine kinase RYK/derailed [Signal transduction mechanisms]
Probab=23.10 E-value=73 Score=33.76 Aligned_cols=31 Identities=13% Similarity=0.464 Sum_probs=15.1
Q ss_pred ceEEEeehhhHHHHHHHHHHHhhheeecccCCC
Q 020804 86 LILLFGIGTGLLITAIISVLIICSCAFRRRNSK 118 (321)
Q Consensus 86 ~iaIVGIaVG~vilLLL~VliLcLC~~Rrkkkk 118 (321)
...+||+++.++++.||++++ .|.+.+.|||
T Consensus 185 ~~f~V~v~va~a~v~lva~il--~c~~~~s~Kr 215 (563)
T KOG1024|consen 185 VTFIVGVIVALALVSLVALIL--YCAKGPSKKR 215 (563)
T ss_pred EEEeeeHHHHHHHHHHHHHHH--HHHhcccchh
Confidence 344555555555555554443 4444444444
No 151
>COG3115 ZipA Cell division protein [Cell division and chromosome partitioning]
Probab=23.03 E-value=55 Score=32.89 Aligned_cols=15 Identities=20% Similarity=0.056 Sum_probs=8.6
Q ss_pred ehhhHHHHHHHHHHH
Q 020804 92 IGTGLLITAIISVLI 106 (321)
Q Consensus 92 IaVG~vilLLL~Vli 106 (321)
|++|+++++.|+|-.
T Consensus 9 IIvG~IAIiaLLvhG 23 (324)
T COG3115 9 IIVGAIAIIALLVHG 23 (324)
T ss_pred HHHHHHHHHHHHHhh
Confidence 567776655555444
No 152
>PF03229 Alpha_GJ: Alphavirus glycoprotein J; InterPro: IPR004913 The exact function of the herpesvirus glycoprotein J is unknown, but it appears to play a role in the inhibition of apotosis of the host cell [].; GO: 0019050 suppression by virus of host apoptosis
Probab=23.02 E-value=1.2e+02 Score=26.82 Aligned_cols=34 Identities=21% Similarity=0.189 Sum_probs=14.9
Q ss_pred CCCCccceEEEeehhhHHHHHHHHHHHhhheeec
Q 020804 80 KGKHSNLILLFGIGTGLLITAIISVLIICSCAFR 113 (321)
Q Consensus 80 KkKklS~iaIVGIaVG~vilLLL~VliLcLC~~R 113 (321)
..-...+-+|||-..--.+.++-...+|==||+|
T Consensus 80 ~p~d~aLp~VIGGLcaL~LaamGA~~LLrR~cRr 113 (126)
T PF03229_consen 80 PPVDFALPLVIGGLCALTLAAMGAGALLRRCCRR 113 (126)
T ss_pred CCcccchhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334556666654443333333333333344443
No 153
>PF03494 Beta-APP: Beta-amyloid peptide (beta-APP); InterPro: IPR013803 Amyloid-beta precursor protein (APP, or A4) is associated with Alzheimer's disease (AD), because one of its breakdown products, amyloid-beta (A-beta), aggregates to form amyloid or senile plaques [, ]. Mutations in APP or in proteins that process APP have been linked with early-onset, familial AD. Individuals with Down's syndrome carry an extra copy of chromosome 21, which contains the APP gene, and almost invariably develop amyloid plaques and Alzheimer's symptoms. APP is important for the neurogenesis and neuronal regeneration, either through the intact protein, or through its many breakdown products []. APP consists of a large N-terminal extracellular region containing heparin-binding and copper-binding sites, a short hydrophobic transmembrane domain, and a short C-terminal intracellular domain. The N-terminal region is similar in structure to cysteine-rich growth factors and appears to function as a cell surface receptor, contributing to neurite growth, neuronal adhesion, axonogenesis and cell mobility []. APP acts as a kinesin I membrane receptor to mediate the axonal transport of beta-secretase and presenilin 1. The N-terminal domain can regulate neurite outgrowth through its binding to heparin and collagen I and IV, which are components of the extracellular matrix. APP is also coupled to apoptosis-inducing pathways, and is involved in copper homeostasis/oxidative stress through copper ion reduction, where copper-metallated APP induces neuronal death []. The C-terminal intracellular domain appears to be involved in transcription regulation through protein-protein interactions. APP can promote transcription activation through binding to APBB1/Tip60, and may bind to the adaptor protein FE65 to transactivate a wide variety of different promoters. APP can be processed by different sets of enzymes: In the non-amyloidogenic (non-plaque-forming) pathway, APP is cleaved by alpha-secretase to yield a soluble N-terminal sAPP-alpha (neuroprotective) and a membrane-bound CTF-alpha. CTF-alpha is broken-down by presenilin-containing gamma-secretase to yield soluble p3 and membrane-bound AICD (nuclear signalling). In the amyloidogenic pathway (plaque-forming), APP is broken down by beta-secretase to yield soluble sAPP-beta and membrane-bound CTF-beta. CTF-beta is broken down by gamma-secretase to yield soluble amyloid-beta and membrane-bound AICD. Amyloid-beta is required for neuronal function, but can aggregate to form amyloid plaques that seem to disrupt brain cells by clogging points of cell-cell contact. This entry represents the amyloid-beta peptide (A-beta), which originates as a breakdown product from the cleavage of amyloid-beta precursor protein (APP, or A4), an integral, glycosylated membrane brain protein. More information about these protein can be found at Protein of the Month: Amyloid-beta Precursor Protein [].; GO: 0005488 binding, 0016021 integral to membrane; PDB: 2LMQ_F 3JTI_B 2LMO_B 3MOQ_D 2LNQ_E 2LMP_G 2BEG_B 1AMC_A 3OW9_B 3U0T_F ....
Probab=23.01 E-value=12 Score=26.90 Aligned_cols=16 Identities=25% Similarity=0.285 Sum_probs=13.0
Q ss_pred CccceEEEeehhhHHH
Q 020804 83 HSNLILLFGIGTGLLI 98 (321)
Q Consensus 83 klS~iaIVGIaVG~vi 98 (321)
.+|+.+|||+-+|+++
T Consensus 22 gSNKGAIIGLMvGgvv 37 (39)
T PF03494_consen 22 GSNKGAIIGLMVGGVV 37 (39)
T ss_dssp SSSSSEEEEEEEESEE
T ss_pred CCCCceEEEEEeeeEE
Confidence 4578899999999875
No 154
>PHA03269 envelope glycoprotein C; Provisional
Probab=22.56 E-value=34 Score=36.42 Aligned_cols=13 Identities=23% Similarity=0.156 Sum_probs=6.4
Q ss_pred eEEEeehhhHHHH
Q 020804 87 ILLFGIGTGLLIT 99 (321)
Q Consensus 87 iaIVGIaVG~vil 99 (321)
.+|+||+.|++++
T Consensus 539 ~~IigV~~~~~al 551 (566)
T PHA03269 539 AAIIGIISIIGIL 551 (566)
T ss_pred eeehHHHHHHHHH
Confidence 4445555554443
No 155
>PF10265 DUF2217: Uncharacterized conserved protein (DUF2217); InterPro: IPR019392 This is a family of conserved proteins varying in length from 500-600 residues. Their function is not known.
Probab=22.15 E-value=49 Score=35.04 Aligned_cols=14 Identities=21% Similarity=0.385 Sum_probs=8.7
Q ss_pred ceEEEeehhhHHHH
Q 020804 86 LILLFGIGTGLLIT 99 (321)
Q Consensus 86 ~iaIVGIaVG~vil 99 (321)
+.++++.++|++++
T Consensus 15 Kkvl~atA~g~v~l 28 (514)
T PF10265_consen 15 KKVLFATAVGVVSL 28 (514)
T ss_pred eeeeehhHHHHHHH
Confidence 44566677777753
No 156
>PF05084 GRA6: Granule antigen protein (GRA6); InterPro: IPR008119 Toxoplasma gondii is an obligate intracellular apicomplexan protozoan parasite, with a complex lifestyle involving varied hosts []. It has two phases of growth: an intestinal phase in feline hosts, and an extra-intestinal phase in other mammals. Oocysts from infected cats develop into tachyzoites, and eventually, bradyzoites and zoitocysts in the extraintestinal host []. Transmission of the parasite occurs through contact with infected cats or raw/undercooked meat; in immunocompromised individuals, it can cause severe and often lethal toxoplasmosis. Acute infection in healthy humans can sometimes also cause tissue damage []. The protozoan utilises a variety of secretory and antigenic proteins to invade a host and gain access to the intracellular environment []. These originate from distinct organelles in the T. gondii cell termed micronemes, rhoptries, and dense granules. They are released at specific times during invasion to ensure the proteins are allocated to their correct target destinations []. Dense granule antigens (GRAs) are released from the T. gondii tachyzoite while still encapsulated in a host vacuole. Gra6, one of these moieties, is associated with the parasitophorous vacuole []. It possesses a hydrophobic central region flanked by two hydrophilic domains, and is present as a single copy gene in the Toxoplasma gondii genome []. Gra6 shares a similar function with Gra2, in that it is rapidly targeted to a network of membranous tubules that connect with the vacuolar membrane []. Indeed, these two proteins, together with Gra4, form a multimeric complex that stabilises the parasite within the vacuole.
Probab=21.50 E-value=89 Score=29.39 Aligned_cols=16 Identities=25% Similarity=0.596 Sum_probs=6.2
Q ss_pred cccCCCCCCCcccCCc
Q 020804 113 RRRNSKASPKETESGK 128 (321)
Q Consensus 113 Rrkkkka~~~~~~~~~ 128 (321)
||+.||.-|.-..+|.
T Consensus 172 RR~~rrsppepsgdgG 187 (215)
T PF05084_consen 172 RRTGRRSPPEPSGDGG 187 (215)
T ss_pred HhhccCCCCCCCCCCC
Confidence 3344443333333333
No 157
>PRK11901 hypothetical protein; Reviewed
Probab=21.48 E-value=57 Score=32.79 Aligned_cols=20 Identities=20% Similarity=0.484 Sum_probs=11.4
Q ss_pred cceEEEeehhhHHHHHHHHHH
Q 020804 85 NLILLFGIGTGLLITAIISVL 105 (321)
Q Consensus 85 S~iaIVGIaVG~vilLLL~Vl 105 (321)
|+-=++ |.||++|||||+|.
T Consensus 34 SRQh~M-iGiGilVLlLLIi~ 53 (327)
T PRK11901 34 SRQHMM-IGIGILVLLLLIIA 53 (327)
T ss_pred HHHHHH-HHHHHHHHHHHHHH
Confidence 333344 67777766665543
No 158
>COG4218 MtrF Tetrahydromethanopterin S-methyltransferase, subunit F [Coenzyme metabolism]
Probab=21.35 E-value=49 Score=26.91 Aligned_cols=25 Identities=12% Similarity=0.371 Sum_probs=17.3
Q ss_pred CccceEEEeehhhHHHHHHHHHHHh
Q 020804 83 HSNLILLFGIGTGLLITAIISVLII 107 (321)
Q Consensus 83 klS~iaIVGIaVG~vilLLL~VliL 107 (321)
.++..-|.|+++|.++.++++++.+
T Consensus 45 Gl~st~i~GlaiGfvfA~vLv~ill 69 (73)
T COG4218 45 GLNSTRIAGLAIGFVFAGVLVGILL 69 (73)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 3456678999999998665554444
No 159
>PF15179 Myc_target_1: Myc target protein 1
Probab=21.23 E-value=38 Score=31.90 Aligned_cols=7 Identities=29% Similarity=0.819 Sum_probs=4.0
Q ss_pred cccCCCc
Q 020804 130 SCESDSE 136 (321)
Q Consensus 130 ~c~~~~~ 136 (321)
.|+..+.
T Consensus 86 ~~drrSn 92 (197)
T PF15179_consen 86 GCDRRSN 92 (197)
T ss_pred ccccccc
Confidence 5666554
No 160
>KOG3054 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.23 E-value=55 Score=32.31 Aligned_cols=24 Identities=21% Similarity=0.307 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHhhheeecccCCCCCC
Q 020804 96 LLITAIISVLIICSCAFRRRNSKASP 121 (321)
Q Consensus 96 ~vilLLL~VliLcLC~~Rrkkkka~~ 121 (321)
.+|+++++|+|+.|.+ ++++|+++
T Consensus 7 vlVaa~llV~~i~l~l--~~r~raA~ 30 (299)
T KOG3054|consen 7 VLVAAALLVAVILLFL--WKRRRAAR 30 (299)
T ss_pred HHHHHHHHHHHHHHHH--HHhhcccc
Confidence 3333333334443333 33344444
No 161
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=21.14 E-value=24 Score=33.29 Aligned_cols=29 Identities=28% Similarity=0.307 Sum_probs=15.4
Q ss_pred CCCCccceEEEeehhhHHHHHHHHHHHhhhe
Q 020804 80 KGKHSNLILLFGIGTGLLITAIISVLIICSC 110 (321)
Q Consensus 80 KkKklS~iaIVGIaVG~vilLLL~VliLcLC 110 (321)
|+|+.+++ +=|+||.++||||+|++.+|.
T Consensus 8 KrRK~N~i--LNiaI~IV~lLIiiva~~lf~ 36 (217)
T PF07423_consen 8 KRRKTNKI--LNIAIGIVSLLIIIVAYQLFF 36 (217)
T ss_pred Hhhhhhhh--HHHHHHHHHHHHHHHhhhhee
Confidence 44554544 345566666566655555444
No 162
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=20.97 E-value=29 Score=33.06 Aligned_cols=27 Identities=11% Similarity=0.126 Sum_probs=16.3
Q ss_pred EEEeehhhHHHHHHHHHHHhhheeeccc
Q 020804 88 LLFGIGTGLLITAIISVLIICSCAFRRR 115 (321)
Q Consensus 88 aIVGIaVG~vilLLL~VliLcLC~~Rrk 115 (321)
+|||+++++++++. +|.-++-++|+++
T Consensus 275 IaVG~~La~lvliv-LiaYli~Rrr~~~ 301 (306)
T PF01299_consen 275 IAVGAALAGLVLIV-LIAYLIGRRRSRA 301 (306)
T ss_pred HHHHHHHHHHHHHH-HHhheeEeccccc
Confidence 33778876665444 4466667776543
No 163
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=20.93 E-value=2.9e+02 Score=22.74 Aligned_cols=29 Identities=17% Similarity=0.126 Sum_probs=12.4
Q ss_pred hhHHHHHHHHHHHhhheeecccCCCCCCC
Q 020804 94 TGLLITAIISVLIICSCAFRRRNSKASPK 122 (321)
Q Consensus 94 VG~vilLLL~VliLcLC~~Rrkkkka~~~ 122 (321)
++.+.+++++|++..+-.|==-|.|+...
T Consensus 66 i~lls~v~IlVily~IyYFVILRer~~~~ 94 (101)
T PF06024_consen 66 ISLLSFVCILVILYAIYYFVILRERQKSI 94 (101)
T ss_pred HHHHHHHHHHHHHhhheEEEEEecccccc
Confidence 33343444444444444444444444433
No 164
>PRK10905 cell division protein DamX; Validated
Probab=20.56 E-value=64 Score=32.50 Aligned_cols=14 Identities=21% Similarity=0.610 Sum_probs=8.5
Q ss_pred ehhhHHHHHHHHHH
Q 020804 92 IGTGLLITAIISVL 105 (321)
Q Consensus 92 IaVG~vilLLL~Vl 105 (321)
|.||++|||||+|-
T Consensus 2 iGiGilVLlLLIig 15 (328)
T PRK10905 2 MGVGILVLLLLIIG 15 (328)
T ss_pred cchhHHHHHHHHHH
Confidence 56677766665543
No 165
>PF14986 DUF4514: Domain of unknown function (DUF4514)
Probab=20.54 E-value=73 Score=24.95 Aligned_cols=26 Identities=27% Similarity=0.372 Sum_probs=18.6
Q ss_pred ceEEEeehhhHHHHHHHHHHHhhhee
Q 020804 86 LILLFGIGTGLLITAIISVLIICSCA 111 (321)
Q Consensus 86 ~iaIVGIaVG~vilLLL~VliLcLC~ 111 (321)
+-+|||.++|.++-+-.+.+=||+.+
T Consensus 21 KYa~IGtalGvaisAgFLaLKicmIr 46 (61)
T PF14986_consen 21 KYAIIGTALGVAISAGFLALKICMIR 46 (61)
T ss_pred eeeeehhHHHHHHHHHHHHHHHHHHH
Confidence 67889999998886555556666644
No 166
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=20.42 E-value=1.4e+02 Score=22.54 Aligned_cols=30 Identities=13% Similarity=0.061 Sum_probs=12.8
Q ss_pred hhhHHHHHHHHHHHhhheeecccCCCCCCC
Q 020804 93 GTGLLITAIISVLIICSCAFRRRNSKASPK 122 (321)
Q Consensus 93 aVG~vilLLL~VliLcLC~~Rrkkkka~~~ 122 (321)
+|...+++.|+.+.+|-.-+++..|..+..
T Consensus 6 iV~i~iv~~lLg~~I~~~~K~ygYkht~d~ 35 (50)
T PF12606_consen 6 IVSIFIVMGLLGLSICTTLKAYGYKHTVDP 35 (50)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccccccCC
Confidence 344444444444444433334444444443
No 167
>PRK10884 SH3 domain-containing protein; Provisional
Probab=20.40 E-value=78 Score=29.38 Aligned_cols=19 Identities=16% Similarity=-0.075 Sum_probs=8.0
Q ss_pred hHHHHHHHHHHHhhheeec
Q 020804 95 GLLITAIISVLIICSCAFR 113 (321)
Q Consensus 95 G~vilLLL~VliLcLC~~R 113 (321)
|++++++-+++.|+|=.++
T Consensus 177 Gg~v~~~GlllGlilp~l~ 195 (206)
T PRK10884 177 GGGVAGIGLLLGLLLPHLI 195 (206)
T ss_pred chHHHHHHHHHHHHhcccc
Confidence 4444444444444444433
No 168
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=20.21 E-value=76 Score=25.52 Aligned_cols=19 Identities=37% Similarity=0.403 Sum_probs=10.9
Q ss_pred hhHHHHHHHHHHHhhheee
Q 020804 94 TGLLITAIISVLIICSCAF 112 (321)
Q Consensus 94 VG~vilLLL~VliLcLC~~ 112 (321)
+|.++++++||+++.+..-
T Consensus 2 I~d~iLi~ICVaii~lIlY 20 (68)
T PF05961_consen 2 IGDFILIIICVAIIGLILY 20 (68)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 4556666666665554443
No 169
>PF10577 UPF0560: Uncharacterised protein family UPF0560; InterPro: IPR018890 This family of proteins has no known function.
Probab=20.04 E-value=38 Score=37.65 Aligned_cols=13 Identities=23% Similarity=0.365 Sum_probs=5.8
Q ss_pred EEeehhhHHHHHH
Q 020804 89 LFGIGTGLLITAI 101 (321)
Q Consensus 89 IVGIaVG~vilLL 101 (321)
+++|.-|+++++|
T Consensus 275 Ll~ILG~~~livl 287 (807)
T PF10577_consen 275 LLAILGGTALIVL 287 (807)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444544333
Done!