Query 020805
Match_columns 321
No_of_seqs 173 out of 1229
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 05:17:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020805.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020805hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0031 CysK Cysteine synthase 100.0 1E-68 2.2E-73 475.1 34.3 290 9-301 2-293 (300)
2 PLN02565 cysteine synthase 100.0 9.8E-68 2.1E-72 485.3 36.9 311 8-318 5-321 (322)
3 PLN03013 cysteine synthase 100.0 3.1E-67 6.6E-72 490.9 34.9 301 7-307 112-414 (429)
4 PLN02556 cysteine synthase/L-3 100.0 4.7E-66 1E-70 480.7 35.8 314 6-319 47-366 (368)
5 PLN00011 cysteine synthase 100.0 1.6E-64 3.6E-69 465.3 37.7 300 8-307 7-307 (323)
6 COG1171 IlvA Threonine dehydra 100.0 8.3E-66 1.8E-70 464.3 27.1 301 8-316 15-328 (347)
7 TIGR01136 cysKM cysteine synth 100.0 1.6E-64 3.6E-69 461.6 35.1 293 13-306 2-295 (299)
8 PRK11761 cysM cysteine synthas 100.0 5.9E-64 1.3E-68 456.1 33.7 288 8-306 2-290 (296)
9 PRK10717 cysteine synthase A; 100.0 2.4E-63 5.1E-68 459.8 37.0 306 7-314 2-326 (330)
10 TIGR01139 cysK cysteine syntha 100.0 3.4E-63 7.5E-68 452.8 35.3 287 13-302 2-289 (298)
11 PLN02356 phosphateglycerate ki 100.0 2.1E-62 4.7E-67 458.1 35.0 305 7-313 42-410 (423)
12 TIGR01138 cysM cysteine syntha 100.0 2.8E-62 6E-67 444.1 34.1 280 12-302 2-281 (290)
13 PRK12483 threonine dehydratase 100.0 7.5E-63 1.6E-67 474.5 31.9 294 11-312 30-335 (521)
14 cd01561 CBS_like CBS_like: Thi 100.0 2.1E-61 4.4E-66 439.8 35.4 284 17-302 1-286 (291)
15 PLN02970 serine racemase 100.0 3.3E-62 7.2E-67 450.9 29.9 297 8-313 17-327 (328)
16 PLN02550 threonine dehydratase 100.0 3.1E-62 6.7E-67 472.6 30.5 294 11-312 102-407 (591)
17 PRK08526 threonine dehydratase 100.0 2.2E-62 4.8E-67 461.5 28.6 295 7-311 9-315 (403)
18 KOG1252 Cystathionine beta-syn 100.0 7E-63 1.5E-67 435.1 23.0 310 6-315 40-360 (362)
19 TIGR01124 ilvA_2Cterm threonin 100.0 1E-61 2.2E-66 467.2 30.8 295 10-312 9-315 (499)
20 PRK06382 threonine dehydratase 100.0 1.9E-61 4.1E-66 457.7 29.8 294 8-312 15-320 (406)
21 PRK08638 threonine dehydratase 100.0 3.3E-61 7.1E-66 444.0 29.5 296 8-313 17-325 (333)
22 PRK07048 serine/threonine dehy 100.0 3.2E-61 6.9E-66 443.9 28.7 295 7-312 13-319 (321)
23 TIGR01137 cysta_beta cystathio 100.0 1.9E-60 4.1E-65 459.1 35.1 303 9-313 2-319 (454)
24 PRK07476 eutB threonine dehydr 100.0 2.8E-61 6.1E-66 444.1 28.1 295 7-312 8-316 (322)
25 TIGR02079 THD1 threonine dehyd 100.0 3.1E-61 6.7E-66 455.7 28.8 296 7-312 5-315 (409)
26 PRK06110 hypothetical protein; 100.0 3.3E-61 7.1E-66 443.7 28.0 296 8-314 11-318 (322)
27 PRK08639 threonine dehydratase 100.0 4.6E-61 9.9E-66 456.6 28.8 296 8-311 15-325 (420)
28 cd06448 L-Ser-dehyd Serine deh 100.0 1E-60 2.2E-65 438.6 29.8 290 18-311 1-312 (316)
29 PRK09224 threonine dehydratase 100.0 8.2E-61 1.8E-65 462.7 30.7 294 10-312 12-318 (504)
30 PRK08198 threonine dehydratase 100.0 6.9E-61 1.5E-65 454.8 29.5 293 7-310 11-315 (404)
31 PRK06608 threonine dehydratase 100.0 1E-60 2.2E-65 441.5 28.9 295 8-313 13-320 (338)
32 TIGR02991 ectoine_eutB ectoine 100.0 1.6E-60 3.5E-65 437.4 29.4 293 7-311 8-314 (317)
33 PRK08813 threonine dehydratase 100.0 2E-60 4.3E-65 437.8 29.6 281 8-313 29-320 (349)
34 PRK06815 hypothetical protein; 100.0 1.7E-60 3.6E-65 438.0 28.3 293 7-310 9-314 (317)
35 PRK07334 threonine dehydratase 100.0 2.1E-60 4.6E-65 450.4 28.0 292 8-310 13-314 (403)
36 TIGR01127 ilvA_1Cterm threonin 100.0 2.5E-60 5.4E-65 447.7 27.6 281 19-310 1-293 (380)
37 PRK02991 D-serine dehydratase; 100.0 1.6E-59 3.6E-64 444.1 31.0 296 16-314 73-435 (441)
38 PRK08246 threonine dehydratase 100.0 9.7E-60 2.1E-64 431.3 28.5 285 8-308 13-309 (310)
39 cd01562 Thr-dehyd Threonine de 100.0 1.1E-59 2.4E-64 431.3 27.0 288 6-304 5-304 (304)
40 KOG1250 Threonine/serine dehyd 100.0 7.8E-60 1.7E-64 422.0 24.8 292 8-308 56-359 (457)
41 PRK06352 threonine synthase; V 100.0 2E-59 4.3E-64 435.7 28.3 291 10-310 20-326 (351)
42 TIGR02035 D_Ser_am_lyase D-ser 100.0 5.9E-58 1.3E-62 431.9 32.6 295 15-312 67-430 (431)
43 PRK07591 threonine synthase; V 100.0 3.9E-58 8.4E-63 436.1 31.3 292 11-310 82-399 (421)
44 cd06447 D-Ser-dehyd D-Serine d 100.0 3.3E-58 7.2E-63 430.3 30.0 287 16-305 50-403 (404)
45 PRK07409 threonine synthase; V 100.0 5.6E-58 1.2E-62 427.2 31.1 293 10-313 23-333 (353)
46 PRK08197 threonine synthase; V 100.0 8E-58 1.7E-62 431.6 30.0 291 11-310 72-388 (394)
47 PRK06721 threonine synthase; R 100.0 4.9E-57 1.1E-61 420.1 32.2 289 10-309 20-325 (352)
48 PRK06381 threonine synthase; V 100.0 2.5E-57 5.3E-62 418.0 29.6 281 13-302 10-318 (319)
49 PRK08329 threonine synthase; V 100.0 5.9E-57 1.3E-61 418.7 30.9 275 12-304 58-345 (347)
50 cd01563 Thr-synth_1 Threonine 100.0 5.3E-57 1.2E-61 416.9 30.0 283 10-302 14-321 (324)
51 PRK06260 threonine synthase; V 100.0 7.3E-57 1.6E-61 425.5 30.4 289 10-309 59-374 (397)
52 PRK08206 diaminopropionate amm 100.0 1.2E-56 2.6E-61 422.8 29.2 303 8-313 32-394 (399)
53 KOG1251 Serine racemase [Signa 100.0 3.9E-57 8.6E-62 381.1 22.2 291 7-309 14-317 (323)
54 PLN02569 threonine synthase 100.0 9E-56 1.9E-60 423.1 31.7 299 11-316 126-452 (484)
55 PRK06450 threonine synthase; V 100.0 2.1E-55 4.5E-60 405.6 28.7 264 11-304 51-336 (338)
56 PRK05638 threonine synthase; V 100.0 5.8E-55 1.3E-59 417.6 30.4 282 11-305 59-358 (442)
57 TIGR01747 diampropi_NH3ly diam 100.0 3.8E-54 8.3E-59 401.9 29.4 299 8-310 13-372 (376)
58 cd00640 Trp-synth-beta_II Tryp 100.0 1.7E-53 3.6E-58 378.6 31.3 243 19-301 1-244 (244)
59 TIGR03528 2_3_DAP_am_ly diamin 100.0 1.3E-53 2.8E-58 400.9 27.9 294 14-310 37-391 (396)
60 TIGR00260 thrC threonine synth 100.0 1.1E-53 2.4E-58 395.4 26.9 282 11-304 16-325 (328)
61 TIGR01415 trpB_rel pyridoxal-p 100.0 2E-52 4.3E-57 394.4 33.1 298 8-312 58-416 (419)
62 PRK13028 tryptophan synthase s 100.0 2.7E-52 5.8E-57 390.3 32.4 296 11-312 54-397 (402)
63 PRK03910 D-cysteine desulfhydr 100.0 1.3E-53 2.8E-58 394.8 23.0 299 9-313 6-330 (331)
64 cd06446 Trp-synth_B Tryptophan 100.0 1.3E-52 2.7E-57 392.3 29.4 293 8-307 23-364 (365)
65 KOG1481 Cysteine synthase [Ami 100.0 2.1E-53 4.4E-58 364.7 21.7 306 9-316 40-379 (391)
66 TIGR00263 trpB tryptophan synt 100.0 2.2E-52 4.9E-57 392.4 30.7 294 11-310 42-383 (385)
67 TIGR01275 ACC_deam_rel pyridox 100.0 2.6E-53 5.7E-58 390.0 23.0 287 15-308 4-307 (311)
68 PRK12391 tryptophan synthase s 100.0 1.1E-51 2.3E-56 389.8 33.4 293 13-311 72-424 (427)
69 TIGR03844 cysteate_syn cysteat 100.0 2.6E-52 5.6E-57 392.0 26.1 294 13-317 57-392 (398)
70 PRK04346 tryptophan synthase s 100.0 1.5E-51 3.2E-56 384.7 30.9 296 11-312 50-393 (397)
71 PRK12390 1-aminocyclopropane-1 100.0 1.6E-52 3.6E-57 388.3 24.3 295 7-306 4-329 (337)
72 cd06449 ACCD Aminocyclopropane 100.0 1.9E-52 4.2E-57 383.4 23.3 277 19-301 1-307 (307)
73 TIGR01274 ACC_deam 1-aminocycl 100.0 4.4E-52 9.5E-57 385.3 25.8 298 7-310 3-332 (337)
74 PLN02618 tryptophan synthase, 100.0 3E-51 6.5E-56 383.2 31.4 300 8-313 55-407 (410)
75 PF00291 PALP: Pyridoxal-phosp 100.0 1.7E-51 3.7E-56 377.3 24.2 279 12-300 1-306 (306)
76 PRK13802 bifunctional indole-3 100.0 1.6E-49 3.5E-54 390.4 33.4 297 11-312 318-673 (695)
77 PRK14045 1-aminocyclopropane-1 100.0 2.8E-50 6.1E-55 371.9 22.3 292 8-308 11-321 (329)
78 PRK13803 bifunctional phosphor 100.0 2.6E-48 5.6E-53 382.7 30.4 297 11-313 263-606 (610)
79 COG0498 ThrC Threonine synthas 100.0 1.2E-43 2.5E-48 330.1 25.5 288 11-308 69-378 (411)
80 COG2515 Acd 1-aminocyclopropan 100.0 7.7E-38 1.7E-42 273.2 19.6 295 8-307 5-318 (323)
81 COG0133 TrpB Tryptophan syntha 100.0 1.1E-33 2.3E-38 247.6 24.9 295 12-312 49-390 (396)
82 PRK09225 threonine synthase; V 100.0 1.5E-32 3.2E-37 261.3 26.9 273 18-310 88-419 (462)
83 cd01560 Thr-synth_2 Threonine 100.0 2.6E-32 5.7E-37 259.8 27.2 275 19-310 88-423 (460)
84 COG1350 Predicted alternative 100.0 1.9E-32 4E-37 240.3 22.4 293 15-313 75-427 (432)
85 KOG1395 Tryptophan synthase be 100.0 2.2E-29 4.7E-34 222.8 21.7 291 16-312 120-458 (477)
86 COG3048 DsdA D-serine dehydrat 99.9 1.6E-26 3.6E-31 201.3 18.2 297 14-313 74-439 (443)
87 PF03808 Glyco_tran_WecB: Glyc 91.3 1.3 2.9E-05 36.9 8.2 102 81-189 12-115 (172)
88 KOG2616 Pyridoxalphosphate-dep 91.1 0.76 1.6E-05 39.5 6.4 55 246-301 148-202 (266)
89 cd06533 Glyco_transf_WecG_TagA 86.7 5.6 0.00012 33.1 8.7 120 82-209 11-132 (171)
90 PF00107 ADH_zinc_N: Zinc-bind 85.3 6.1 0.00013 30.6 8.0 32 175-209 58-89 (130)
91 cd08230 glucose_DH Glucose deh 84.2 7.9 0.00017 35.9 9.5 52 67-119 171-222 (355)
92 PF05368 NmrA: NmrA-like famil 83.7 17 0.00037 31.3 10.9 50 73-123 2-51 (233)
93 cd01075 NAD_bind_Leu_Phe_Val_D 83.1 15 0.00033 31.3 10.0 50 50-99 6-57 (200)
94 PRK03659 glutathione-regulated 82.8 23 0.0005 35.7 12.7 97 71-209 401-498 (601)
95 PRK03562 glutathione-regulated 82.4 24 0.00051 35.8 12.6 51 71-124 401-451 (621)
96 TIGR03201 dearomat_had 6-hydro 81.9 20 0.00042 33.2 11.1 58 61-122 159-216 (349)
97 PRK09424 pntA NAD(P) transhydr 81.7 36 0.00078 33.6 13.1 50 71-123 166-215 (509)
98 PRK10669 putative cation:proto 81.6 28 0.00061 34.7 12.8 97 71-209 418-515 (558)
99 KOG0025 Zn2+-binding dehydroge 81.6 15 0.00033 33.3 9.5 86 34-124 124-217 (354)
100 PF02826 2-Hacid_dh_C: D-isome 81.5 8.3 0.00018 32.2 7.7 114 71-209 37-152 (178)
101 COG0604 Qor NADPH:quinone redu 80.8 18 0.00038 33.5 10.3 57 63-122 137-193 (326)
102 TIGR03366 HpnZ_proposed putati 80.3 14 0.0003 33.0 9.3 52 66-120 118-169 (280)
103 cd08294 leukotriene_B4_DH_like 79.4 27 0.0006 31.5 11.1 57 62-121 137-193 (329)
104 TIGR01064 pyruv_kin pyruvate k 79.3 42 0.0009 32.9 12.6 123 85-213 262-407 (473)
105 TIGR00696 wecB_tagA_cpsF bacte 78.9 18 0.0004 30.3 8.8 98 82-187 13-112 (177)
106 TIGR02819 fdhA_non_GSH formald 78.7 31 0.00067 32.7 11.5 55 62-119 179-233 (393)
107 TIGR00670 asp_carb_tr aspartat 77.5 13 0.00028 34.1 8.0 59 63-123 145-208 (301)
108 PRK13656 trans-2-enoyl-CoA red 77.3 46 0.001 31.7 11.8 58 40-100 13-73 (398)
109 PF01210 NAD_Gly3P_dh_N: NAD-d 77.0 5.4 0.00012 32.5 5.1 42 73-117 2-43 (157)
110 PF00070 Pyr_redox: Pyridine n 76.8 18 0.00038 25.6 7.2 50 73-122 2-60 (80)
111 PF01041 DegT_DnrJ_EryC1: DegT 76.1 6.5 0.00014 36.8 6.0 55 71-125 41-95 (363)
112 PRK14030 glutamate dehydrogena 75.8 19 0.00042 34.8 9.1 53 49-101 207-259 (445)
113 COG1063 Tdh Threonine dehydrog 75.4 70 0.0015 29.8 14.7 51 72-124 171-222 (350)
114 cd08274 MDR9 Medium chain dehy 75.1 30 0.00066 31.6 10.2 56 61-120 170-225 (350)
115 TIGR00561 pntA NAD(P) transhyd 74.1 41 0.0009 33.2 11.0 51 71-124 165-215 (511)
116 TIGR02825 B4_12hDH leukotriene 73.5 26 0.00057 31.8 9.3 57 62-121 132-188 (325)
117 PF00764 Arginosuc_synth: Argi 73.3 39 0.00084 32.1 10.2 127 73-207 1-138 (388)
118 COG1064 AdhP Zn-dependent alco 73.3 23 0.00049 33.0 8.6 61 60-124 158-218 (339)
119 PRK12823 benD 1,6-dihydroxycyc 71.3 31 0.00067 30.1 8.9 71 71-141 10-81 (260)
120 TIGR03451 mycoS_dep_FDH mycoth 71.1 48 0.001 30.7 10.5 56 62-120 170-225 (358)
121 cd08295 double_bond_reductase_ 70.0 32 0.00069 31.5 9.0 55 63-120 146-201 (338)
122 PRK08628 short chain dehydroge 69.9 42 0.00091 29.2 9.4 56 70-125 8-63 (258)
123 TIGR02822 adh_fam_2 zinc-bindi 69.5 23 0.00051 32.5 7.9 57 61-121 158-214 (329)
124 PRK08703 short chain dehydroge 69.2 57 0.0012 28.0 10.0 32 70-101 7-38 (239)
125 PF00106 adh_short: short chai 69.2 45 0.00096 26.7 8.8 69 71-139 2-75 (167)
126 PTZ00079 NADP-specific glutama 68.9 36 0.00078 33.0 9.1 53 50-102 217-269 (454)
127 cd08281 liver_ADH_like1 Zinc-d 68.9 58 0.0013 30.3 10.6 56 62-120 185-240 (371)
128 PRK07109 short chain dehydroge 68.6 33 0.00071 31.7 8.7 71 71-141 10-82 (334)
129 PRK12779 putative bifunctional 68.5 40 0.00087 36.1 10.2 32 70-101 306-337 (944)
130 PRK08226 short chain dehydroge 68.4 39 0.00085 29.5 8.9 71 70-140 7-78 (263)
131 PRK12481 2-deoxy-D-gluconate 3 68.3 46 0.001 29.0 9.3 71 70-141 9-80 (251)
132 PRK12743 oxidoreductase; Provi 68.2 34 0.00073 29.9 8.4 71 71-141 4-77 (256)
133 KOG0024 Sorbitol dehydrogenase 68.1 51 0.0011 30.5 9.4 63 59-124 160-222 (354)
134 PRK06935 2-deoxy-D-gluconate 3 68.1 46 0.001 29.0 9.3 72 70-141 16-88 (258)
135 cd08256 Zn_ADH2 Alcohol dehydr 68.0 79 0.0017 29.0 11.3 56 62-120 168-223 (350)
136 PF04127 DFP: DNA / pantothena 67.9 36 0.00079 28.7 8.1 61 73-142 23-83 (185)
137 PRK08993 2-deoxy-D-gluconate 3 67.9 62 0.0013 28.1 10.1 70 70-140 11-81 (253)
138 COG0078 ArgF Ornithine carbamo 67.6 30 0.00065 31.6 7.8 54 71-124 155-214 (310)
139 cd06324 PBP1_ABC_sugar_binding 67.5 93 0.002 27.9 17.9 43 164-209 192-238 (305)
140 cd08233 butanediol_DH_like (2R 67.4 78 0.0017 29.0 11.1 56 62-120 166-221 (351)
141 cd08293 PTGR2 Prostaglandin re 67.3 74 0.0016 29.0 10.9 57 63-122 147-207 (345)
142 PLN03154 putative allyl alcoho 67.0 87 0.0019 29.0 11.3 56 63-121 153-209 (348)
143 PRK09880 L-idonate 5-dehydroge 66.9 40 0.00088 31.0 9.0 53 66-121 167-219 (343)
144 PRK13394 3-hydroxybutyrate deh 66.8 51 0.0011 28.6 9.3 56 70-125 8-64 (262)
145 PRK08589 short chain dehydroge 66.3 41 0.0009 29.7 8.7 72 70-141 7-79 (272)
146 PRK06348 aspartate aminotransf 66.1 1.2E+02 0.0025 28.5 12.7 79 41-123 62-141 (384)
147 TIGR01832 kduD 2-deoxy-D-gluco 65.8 59 0.0013 28.0 9.5 70 70-140 6-76 (248)
148 PF00185 OTCace: Aspartate/orn 65.2 19 0.00042 29.4 5.8 45 79-123 13-65 (158)
149 TIGR03538 DapC_gpp succinyldia 65.2 75 0.0016 29.8 10.7 82 41-124 60-145 (393)
150 PRK12771 putative glutamate sy 65.2 14 0.0003 37.0 5.8 52 71-122 138-207 (564)
151 PRK06139 short chain dehydroge 64.9 38 0.00082 31.3 8.4 71 70-140 8-80 (330)
152 cd00401 AdoHcyase S-adenosyl-L 64.8 30 0.00065 33.2 7.7 53 64-120 197-249 (413)
153 cd08239 THR_DH_like L-threonin 64.8 48 0.001 30.3 9.1 57 61-120 156-212 (339)
154 cd08289 MDR_yhfp_like Yhfp put 64.5 60 0.0013 29.2 9.6 48 69-119 147-194 (326)
155 PRK10309 galactitol-1-phosphat 64.0 45 0.00097 30.6 8.8 56 62-120 154-209 (347)
156 KOG2862 Alanine-glyoxylate ami 63.7 1.2E+02 0.0026 28.1 10.7 84 71-155 69-155 (385)
157 TIGR01751 crot-CoA-red crotony 63.7 52 0.0011 31.0 9.3 56 64-122 185-240 (398)
158 cd08292 ETR_like_2 2-enoyl thi 63.6 72 0.0016 28.6 10.0 54 62-118 133-186 (324)
159 PRK06114 short chain dehydroge 63.5 84 0.0018 27.3 10.0 55 70-124 9-65 (254)
160 cd08296 CAD_like Cinnamyl alco 63.3 85 0.0018 28.6 10.4 51 65-119 160-210 (333)
161 cd05211 NAD_bind_Glu_Leu_Phe_V 63.2 41 0.00089 29.2 7.7 53 51-103 4-56 (217)
162 COG1587 HemD Uroporphyrinogen- 63.0 1.1E+02 0.0023 26.9 10.6 121 82-211 86-213 (248)
163 cd05313 NAD_bind_2_Glu_DH NAD( 62.7 42 0.00092 29.9 7.8 52 50-101 18-69 (254)
164 PRK08277 D-mannonate oxidoredu 62.6 59 0.0013 28.7 9.0 55 71-125 12-67 (278)
165 PF03853 YjeF_N: YjeF-related 62.5 60 0.0013 26.8 8.4 30 71-100 27-59 (169)
166 cd08246 crotonyl_coA_red croto 62.5 49 0.0011 31.0 8.9 54 65-121 190-243 (393)
167 PRK05557 fabG 3-ketoacyl-(acyl 62.2 73 0.0016 27.1 9.4 55 71-125 7-63 (248)
168 cd08242 MDR_like Medium chain 62.2 53 0.0011 29.6 8.8 55 62-120 149-203 (319)
169 PRK12937 short chain dehydroge 62.1 78 0.0017 27.0 9.5 71 70-140 6-79 (245)
170 KOG0023 Alcohol dehydrogenase, 61.9 37 0.00079 31.4 7.2 61 60-124 174-234 (360)
171 PRK15438 erythronate-4-phospha 61.9 83 0.0018 29.8 10.0 131 45-199 88-224 (378)
172 PLN02740 Alcohol dehydrogenase 61.8 50 0.0011 31.0 8.7 56 62-120 192-247 (381)
173 TIGR02818 adh_III_F_hyde S-(hy 61.7 64 0.0014 30.1 9.4 57 62-121 179-235 (368)
174 TIGR02853 spore_dpaA dipicolin 61.6 77 0.0017 28.7 9.5 66 50-118 131-196 (287)
175 PRK05993 short chain dehydroge 61.4 1E+02 0.0022 27.2 10.3 66 71-140 6-71 (277)
176 cd08287 FDH_like_ADH3 formalde 61.2 1.2E+02 0.0026 27.6 11.0 53 63-118 163-215 (345)
177 PRK07523 gluconate 5-dehydroge 61.2 61 0.0013 28.1 8.7 56 70-125 11-67 (255)
178 cd08301 alcohol_DH_plants Plan 61.2 63 0.0014 30.0 9.3 57 62-121 181-237 (369)
179 KOG1201 Hydroxysteroid 17-beta 61.0 1.1E+02 0.0023 28.1 10.0 73 69-143 38-113 (300)
180 PRK07097 gluconate 5-dehydroge 60.9 63 0.0014 28.3 8.8 72 70-141 11-84 (265)
181 PTZ00354 alcohol dehydrogenase 60.8 1.3E+02 0.0027 27.1 11.0 55 64-121 136-190 (334)
182 PRK05786 fabG 3-ketoacyl-(acyl 60.8 63 0.0014 27.6 8.6 33 71-103 7-39 (238)
183 cd08300 alcohol_DH_class_III c 60.8 53 0.0011 30.6 8.7 56 62-120 180-235 (368)
184 PRK12939 short chain dehydroge 60.2 70 0.0015 27.4 8.9 56 70-125 8-64 (250)
185 PRK15408 autoinducer 2-binding 60.2 1.4E+02 0.0031 27.5 17.2 146 54-209 70-242 (336)
186 cd08277 liver_alcohol_DH_like 60.0 63 0.0014 30.0 9.0 56 62-120 178-233 (365)
187 PRK13243 glyoxylate reductase; 59.9 72 0.0016 29.6 9.2 104 71-198 151-256 (333)
188 cd08297 CAD3 Cinnamyl alcohol 59.9 69 0.0015 29.1 9.2 52 65-119 162-213 (341)
189 cd08288 MDR_yhdh Yhdh putative 59.6 69 0.0015 28.8 9.1 50 68-120 146-195 (324)
190 PRK07550 hypothetical protein; 59.3 1.5E+02 0.0033 27.6 13.4 77 44-124 66-143 (386)
191 PRK07792 fabG 3-ketoacyl-(acyl 59.2 77 0.0017 28.7 9.2 56 70-125 13-70 (306)
192 PRK05653 fabG 3-ketoacyl-(acyl 59.0 93 0.002 26.4 9.4 54 71-124 7-61 (246)
193 COG2130 Putative NADP-dependen 58.7 81 0.0017 29.0 8.8 58 61-121 143-201 (340)
194 PRK05396 tdh L-threonine 3-deh 58.7 67 0.0015 29.3 8.9 50 68-120 163-212 (341)
195 PRK08063 enoyl-(acyl carrier p 58.2 1E+02 0.0023 26.4 9.7 56 70-125 5-62 (250)
196 cd08231 MDR_TM0436_like Hypoth 58.1 1.5E+02 0.0033 27.2 12.2 52 64-119 173-225 (361)
197 TIGR01316 gltA glutamate synth 58.1 43 0.00094 32.4 7.7 53 71-123 273-330 (449)
198 PF01262 AlaDh_PNT_C: Alanine 58.1 45 0.00098 27.4 6.9 51 71-124 21-71 (168)
199 PRK06182 short chain dehydroge 58.0 1.3E+02 0.0028 26.4 10.7 67 71-141 5-71 (273)
200 PRK06172 short chain dehydroge 57.4 82 0.0018 27.2 8.9 56 70-125 8-64 (253)
201 COG0623 FabI Enoyl-[acyl-carri 57.3 56 0.0012 28.8 7.3 68 110-184 26-93 (259)
202 PRK09134 short chain dehydroge 57.1 1.1E+02 0.0024 26.5 9.7 55 70-124 10-66 (258)
203 PRK06128 oxidoreductase; Provi 57.1 1.2E+02 0.0025 27.3 10.1 70 71-140 57-130 (300)
204 PRK07478 short chain dehydroge 57.1 81 0.0018 27.3 8.8 71 71-141 8-80 (254)
205 PRK10754 quinone oxidoreductas 57.0 1.5E+02 0.0032 26.7 11.0 53 63-118 135-187 (327)
206 cd08285 NADP_ADH NADP(H)-depen 57.0 1.2E+02 0.0026 27.8 10.3 55 61-118 159-213 (351)
207 PRK00257 erythronate-4-phospha 57.0 1.4E+02 0.003 28.4 10.7 130 45-198 88-223 (381)
208 PRK08306 dipicolinate synthase 56.9 1.1E+02 0.0024 27.8 9.8 47 71-120 153-199 (296)
209 PF08659 KR: KR domain; Inter 56.7 72 0.0016 26.4 8.0 71 71-141 2-78 (181)
210 cd08258 Zn_ADH4 Alcohol dehydr 56.7 80 0.0017 28.4 8.9 53 64-118 160-212 (306)
211 PRK08217 fabG 3-ketoacyl-(acyl 56.5 83 0.0018 26.9 8.7 55 70-124 6-61 (253)
212 PRK08862 short chain dehydroge 56.5 81 0.0018 27.1 8.6 71 71-141 7-79 (227)
213 PRK08278 short chain dehydroge 56.4 1.2E+02 0.0025 26.8 9.8 56 70-125 7-70 (273)
214 PRK08643 acetoin reductase; Va 56.3 1E+02 0.0023 26.6 9.4 55 71-125 4-59 (256)
215 PRK06181 short chain dehydroge 56.3 79 0.0017 27.5 8.6 55 71-125 3-58 (263)
216 cd08291 ETR_like_1 2-enoyl thi 56.2 80 0.0017 28.6 8.9 49 71-122 145-194 (324)
217 PRK07666 fabG 3-ketoacyl-(acyl 56.1 95 0.0021 26.5 9.0 55 71-125 9-64 (239)
218 COG2242 CobL Precorrin-6B meth 56.0 89 0.0019 26.5 8.2 155 34-214 7-165 (187)
219 PRK07806 short chain dehydroge 55.6 1.1E+02 0.0025 26.2 9.4 56 70-125 7-64 (248)
220 cd08298 CAD2 Cinnamyl alcohol 55.6 78 0.0017 28.6 8.7 53 62-118 161-213 (329)
221 PF07279 DUF1442: Protein of u 55.4 78 0.0017 27.5 7.8 55 60-117 35-94 (218)
222 PRK05876 short chain dehydroge 55.4 93 0.002 27.6 9.0 72 70-141 7-80 (275)
223 PRK12938 acetyacetyl-CoA reduc 55.3 1.2E+02 0.0025 26.0 9.5 54 71-124 5-60 (246)
224 TIGR00692 tdh L-threonine 3-de 55.1 98 0.0021 28.2 9.4 50 66-118 159-208 (340)
225 PRK12775 putative trifunctiona 55.1 1.1E+02 0.0024 33.1 10.7 32 71-102 431-462 (1006)
226 cd08269 Zn_ADH9 Alcohol dehydr 55.1 1.5E+02 0.0033 26.2 11.3 53 62-118 123-176 (312)
227 PF04989 CmcI: Cephalosporin h 55.0 35 0.00075 29.4 5.7 48 163-212 22-70 (206)
228 TIGR03590 PseG pseudaminic aci 55.0 1.4E+02 0.0031 26.7 10.1 81 35-124 2-88 (279)
229 cd08284 FDH_like_2 Glutathione 55.0 84 0.0018 28.6 8.9 53 64-119 163-215 (344)
230 cd08185 Fe-ADH1 Iron-containin 54.8 88 0.0019 29.5 9.1 89 95-189 4-96 (380)
231 PLN02918 pyridoxine (pyridoxam 54.8 94 0.002 31.0 9.4 49 71-119 137-192 (544)
232 PRK08303 short chain dehydroge 54.6 1.1E+02 0.0023 27.8 9.4 71 71-141 10-92 (305)
233 PRK14031 glutamate dehydrogena 54.5 60 0.0013 31.5 7.8 52 50-101 208-259 (444)
234 PRK06124 gluconate 5-dehydroge 54.4 91 0.002 27.0 8.7 55 70-124 12-67 (256)
235 PRK12809 putative oxidoreducta 54.4 74 0.0016 32.4 9.0 78 46-123 279-381 (639)
236 PRK08936 glucose-1-dehydrogena 54.3 1.3E+02 0.0028 26.1 9.7 55 70-124 8-64 (261)
237 cd01455 vWA_F11C1-5a_type Von 54.3 39 0.00085 28.7 5.9 35 268-303 88-123 (191)
238 PRK12744 short chain dehydroge 54.0 95 0.0021 26.9 8.7 70 71-140 10-85 (257)
239 PRK12826 3-ketoacyl-(acyl-carr 53.9 1E+02 0.0022 26.4 8.8 56 70-125 7-63 (251)
240 PRK12935 acetoacetyl-CoA reduc 53.9 1.1E+02 0.0023 26.3 8.9 56 70-125 7-64 (247)
241 PRK05866 short chain dehydroge 53.6 91 0.002 28.0 8.7 71 71-141 42-114 (293)
242 PRK06194 hypothetical protein; 53.5 1.2E+02 0.0026 26.8 9.4 55 71-125 8-63 (287)
243 PRK07890 short chain dehydroge 53.3 96 0.0021 26.8 8.6 56 70-125 6-62 (258)
244 PRK07035 short chain dehydroge 53.3 1.1E+02 0.0024 26.4 9.0 70 71-140 10-81 (252)
245 PF02254 TrkA_N: TrkA-N domain 53.3 94 0.002 23.2 12.4 35 175-209 62-96 (116)
246 PF11760 CbiG_N: Cobalamin syn 53.1 32 0.0007 25.0 4.5 48 167-214 3-50 (84)
247 PRK03692 putative UDP-N-acetyl 53.0 86 0.0019 27.7 8.1 95 82-187 69-169 (243)
248 cd08243 quinone_oxidoreductase 53.0 1.1E+02 0.0024 27.1 9.3 54 64-120 138-191 (320)
249 KOG1177 Long chain fatty acid 52.9 1.7E+02 0.0036 28.9 10.3 109 34-143 68-180 (596)
250 PLN02527 aspartate carbamoyltr 52.9 87 0.0019 28.7 8.4 53 71-123 152-210 (306)
251 PRK05867 short chain dehydroge 52.8 1E+02 0.0023 26.6 8.8 71 71-141 11-83 (253)
252 PRK07454 short chain dehydroge 52.8 97 0.0021 26.5 8.5 70 71-140 8-79 (241)
253 PRK11891 aspartate carbamoyltr 52.8 79 0.0017 30.5 8.3 53 71-123 242-300 (429)
254 PRK12429 3-hydroxybutyrate deh 52.6 1.2E+02 0.0025 26.1 9.1 56 70-125 5-61 (258)
255 PF00670 AdoHcyase_NAD: S-aden 52.6 78 0.0017 26.1 7.2 89 71-186 24-112 (162)
256 PRK06701 short chain dehydroge 52.2 1.6E+02 0.0035 26.3 10.1 55 71-125 48-104 (290)
257 COG0159 TrpA Tryptophan syntha 52.2 1.3E+02 0.0029 27.0 9.1 83 48-134 76-165 (265)
258 PRK06500 short chain dehydroge 52.0 1.4E+02 0.0031 25.5 9.5 52 70-124 7-59 (249)
259 cd08245 CAD Cinnamyl alcohol d 51.9 1.1E+02 0.0023 27.7 9.0 54 64-121 158-211 (330)
260 PLN03050 pyridoxine (pyridoxam 51.9 98 0.0021 27.4 8.3 33 71-103 62-97 (246)
261 PRK02610 histidinol-phosphate 51.7 1.1E+02 0.0024 28.5 9.2 53 72-124 93-145 (374)
262 PLN02702 L-idonate 5-dehydroge 51.7 1.3E+02 0.0029 27.7 9.8 57 62-121 175-231 (364)
263 PRK08261 fabG 3-ketoacyl-(acyl 51.6 1.4E+02 0.0031 28.5 10.2 71 69-140 210-280 (450)
264 PRK09257 aromatic amino acid a 51.6 2.1E+02 0.0046 26.8 11.7 82 40-124 64-149 (396)
265 PRK08192 aspartate carbamoyltr 51.5 92 0.002 29.0 8.4 54 71-124 160-219 (338)
266 PRK07231 fabG 3-ketoacyl-(acyl 51.4 1.5E+02 0.0032 25.4 9.4 55 70-125 6-61 (251)
267 PRK13376 pyrB bifunctional asp 51.3 80 0.0017 31.3 8.3 53 71-123 175-233 (525)
268 PRK08265 short chain dehydroge 51.1 1.5E+02 0.0032 25.9 9.5 70 70-141 7-77 (261)
269 PRK07791 short chain dehydroge 51.0 1.3E+02 0.0029 26.7 9.3 72 70-141 7-89 (286)
270 cd05282 ETR_like 2-enoyl thioe 50.9 1.3E+02 0.0028 26.9 9.4 51 64-117 134-184 (323)
271 PRK09147 succinyldiaminopimela 50.9 2.2E+02 0.0047 26.7 13.5 79 44-124 64-146 (396)
272 PRK08085 gluconate 5-dehydroge 50.8 1.3E+02 0.0027 26.1 9.0 70 71-140 11-82 (254)
273 TIGR03206 benzo_BadH 2-hydroxy 50.7 1.1E+02 0.0025 26.1 8.6 56 70-125 4-60 (250)
274 TIGR02823 oxido_YhdH putative 50.7 1.1E+02 0.0025 27.3 9.0 50 66-118 142-192 (323)
275 PRK12745 3-ketoacyl-(acyl-carr 50.6 1.5E+02 0.0032 25.5 9.4 70 71-140 4-76 (256)
276 PRK06949 short chain dehydroge 50.6 1E+02 0.0022 26.6 8.4 33 70-102 10-42 (258)
277 COG0300 DltE Short-chain dehyd 50.5 1.2E+02 0.0027 27.2 8.7 72 70-141 7-81 (265)
278 cd08299 alcohol_DH_class_I_II_ 50.5 1.1E+02 0.0023 28.6 8.9 54 62-118 184-237 (373)
279 PLN00175 aminotransferase fami 50.4 2.3E+02 0.005 26.9 12.8 52 72-124 117-168 (413)
280 PRK07677 short chain dehydroge 50.3 1.2E+02 0.0026 26.2 8.8 70 71-140 3-74 (252)
281 PF02737 3HCDH_N: 3-hydroxyacy 50.3 54 0.0012 27.4 6.2 31 73-103 2-32 (180)
282 cd08267 MDR1 Medium chain dehy 50.3 1.2E+02 0.0026 26.9 9.0 51 64-118 139-189 (319)
283 PRK12828 short chain dehydroge 50.3 1.4E+02 0.0031 25.1 9.1 55 70-124 8-63 (239)
284 PRK09414 glutamate dehydrogena 50.1 75 0.0016 30.8 7.8 52 50-101 212-263 (445)
285 PRK06077 fabG 3-ketoacyl-(acyl 50.0 1.1E+02 0.0023 26.3 8.4 55 71-125 8-64 (252)
286 PRK08213 gluconate 5-dehydroge 50.0 1.3E+02 0.0027 26.1 8.9 56 70-125 13-69 (259)
287 PRK06567 putative bifunctional 50.0 1.3E+02 0.0029 32.3 10.0 33 70-102 383-415 (1028)
288 PRK10083 putative oxidoreducta 49.9 1.7E+02 0.0037 26.5 10.1 57 61-120 153-210 (339)
289 PRK06198 short chain dehydroge 49.8 1.6E+02 0.0035 25.4 9.5 55 71-125 8-64 (260)
290 PRK05826 pyruvate kinase; Prov 49.4 2.1E+02 0.0046 28.0 10.8 124 85-213 264-407 (465)
291 PRK07814 short chain dehydroge 49.4 1.2E+02 0.0026 26.4 8.7 54 70-123 11-65 (263)
292 cd08244 MDR_enoyl_red Possible 49.3 1.8E+02 0.0038 26.0 10.0 53 62-117 136-188 (324)
293 PRK11706 TDP-4-oxo-6-deoxy-D-g 49.3 56 0.0012 30.6 6.8 55 71-125 47-101 (375)
294 PRK13581 D-3-phosphoglycerate 49.3 1.6E+02 0.0035 29.2 10.2 104 71-198 141-246 (526)
295 PRK12831 putative oxidoreducta 49.3 73 0.0016 31.0 7.8 53 71-123 282-339 (464)
296 PLN02827 Alcohol dehydrogenase 49.2 1.4E+02 0.003 28.0 9.4 55 63-120 188-242 (378)
297 PRK15454 ethanol dehydrogenase 49.1 81 0.0018 30.0 7.9 91 92-189 24-119 (395)
298 cd08264 Zn_ADH_like2 Alcohol d 49.0 1.1E+02 0.0023 27.6 8.5 38 62-99 156-193 (325)
299 PRK05717 oxidoreductase; Valid 48.9 1.6E+02 0.0035 25.4 9.4 70 70-141 11-81 (255)
300 PRK08264 short chain dehydroge 48.6 88 0.0019 26.6 7.5 49 70-124 7-56 (238)
301 PRK07904 short chain dehydroge 48.6 1.6E+02 0.0035 25.6 9.3 53 71-123 10-66 (253)
302 TIGR01470 cysG_Nterm siroheme 48.2 1.8E+02 0.0038 24.9 9.6 51 71-124 10-60 (205)
303 cd05281 TDH Threonine dehydrog 48.1 1.2E+02 0.0026 27.6 8.8 49 67-118 162-210 (341)
304 cd08278 benzyl_alcohol_DH Benz 48.0 2.1E+02 0.0045 26.5 10.4 55 63-120 181-235 (365)
305 cd08259 Zn_ADH5 Alcohol dehydr 48.0 1.4E+02 0.0031 26.6 9.2 52 64-118 158-209 (332)
306 PRK06138 short chain dehydroge 47.9 1.5E+02 0.0034 25.3 9.1 70 70-140 6-77 (252)
307 PRK06436 glycerate dehydrogena 47.9 1.6E+02 0.0034 27.0 9.2 101 71-198 123-225 (303)
308 cd08261 Zn_ADH7 Alcohol dehydr 47.8 2.1E+02 0.0047 25.8 10.8 52 62-117 153-204 (337)
309 PRK06836 aspartate aminotransf 47.7 2.4E+02 0.0053 26.4 11.1 53 72-125 98-150 (394)
310 COG2085 Predicted dinucleotide 47.6 1.9E+02 0.004 25.1 11.1 32 72-103 3-34 (211)
311 cd05188 MDR Medium chain reduc 47.6 1.8E+02 0.0039 24.9 9.8 51 64-118 130-180 (271)
312 PLN02342 ornithine carbamoyltr 47.5 1.1E+02 0.0023 28.8 8.1 59 63-123 189-251 (348)
313 PRK06505 enoyl-(acyl carrier p 47.4 1.7E+02 0.0036 25.9 9.3 70 71-141 9-82 (271)
314 TIGR02415 23BDH acetoin reduct 47.2 1.5E+02 0.0034 25.4 9.0 55 71-125 2-57 (254)
315 TIGR02824 quinone_pig3 putativ 47.1 2E+02 0.0044 25.3 10.9 54 62-118 133-186 (325)
316 cd08282 PFDH_like Pseudomonas 46.8 1.4E+02 0.0031 27.7 9.2 55 62-119 170-224 (375)
317 cd08240 6_hydroxyhexanoate_dh_ 46.8 1.8E+02 0.0039 26.5 9.7 48 68-118 175-222 (350)
318 PRK11658 UDP-4-amino-4-deoxy-L 46.8 1.6E+02 0.0035 27.6 9.5 52 73-124 51-102 (379)
319 cd05285 sorbitol_DH Sorbitol d 46.7 1.8E+02 0.0039 26.5 9.7 56 61-119 155-210 (343)
320 PRK12778 putative bifunctional 46.7 2.6E+02 0.0056 29.1 11.7 97 70-186 431-528 (752)
321 TIGR01963 PHB_DH 3-hydroxybuty 46.6 1.4E+02 0.003 25.6 8.6 54 71-124 3-57 (255)
322 COG0399 WecE Predicted pyridox 46.5 1.7E+02 0.0037 27.7 9.4 55 71-125 50-104 (374)
323 PRK06702 O-acetylhomoserine am 46.5 1.5E+02 0.0031 28.7 9.2 78 73-155 79-160 (432)
324 cd05279 Zn_ADH1 Liver alcohol 46.2 2.2E+02 0.0048 26.3 10.3 54 62-118 177-230 (365)
325 cd05280 MDR_yhdh_yhfp Yhdh and 46.2 1.7E+02 0.0037 26.1 9.4 47 71-120 149-195 (325)
326 PRK15481 transcriptional regul 46.2 2.7E+02 0.0058 26.5 13.5 51 72-124 143-194 (431)
327 PRK10490 sensor protein KdpD; 46.1 3.1E+02 0.0066 29.3 12.3 107 71-184 252-375 (895)
328 PRK06113 7-alpha-hydroxysteroi 46.0 1.5E+02 0.0032 25.7 8.7 55 70-124 12-67 (255)
329 PRK09072 short chain dehydroge 45.9 1.4E+02 0.0031 25.9 8.6 33 70-102 6-38 (263)
330 PRK00779 ornithine carbamoyltr 45.8 1.3E+02 0.0028 27.6 8.3 46 78-123 161-209 (304)
331 PRK06483 dihydromonapterin red 45.6 1.9E+02 0.0041 24.6 9.9 67 71-140 4-70 (236)
332 PRK08594 enoyl-(acyl carrier p 45.6 2E+02 0.0044 25.0 9.5 71 71-141 9-84 (257)
333 PRK07774 short chain dehydroge 45.5 1.8E+02 0.004 24.8 9.2 53 71-123 8-61 (250)
334 cd05283 CAD1 Cinnamyl alcohol 45.5 1.7E+02 0.0037 26.6 9.3 52 66-121 167-218 (337)
335 TIGR00936 ahcY adenosylhomocys 45.5 62 0.0014 31.0 6.4 91 71-188 196-286 (406)
336 cd08250 Mgc45594_like Mgc45594 45.4 2.3E+02 0.0049 25.4 11.2 52 64-118 135-186 (329)
337 PRK05562 precorrin-2 dehydroge 45.4 2.1E+02 0.0045 25.0 9.1 113 71-198 26-154 (223)
338 PRK08410 2-hydroxyacid dehydro 45.3 1.4E+02 0.003 27.4 8.5 112 70-211 145-258 (311)
339 PF13561 adh_short_C2: Enoyl-( 45.3 80 0.0017 27.2 6.8 71 110-186 14-84 (241)
340 PRK09860 putative alcohol dehy 45.2 1.3E+02 0.0028 28.5 8.5 89 94-189 8-101 (383)
341 TIGR03325 BphB_TodD cis-2,3-di 45.1 1.9E+02 0.0042 25.1 9.3 69 70-141 6-76 (262)
342 KOG1176 Acyl-CoA synthetase [L 45.1 2.2E+02 0.0047 28.5 10.3 60 66-125 69-128 (537)
343 PRK05565 fabG 3-ketoacyl-(acyl 45.0 1.8E+02 0.0039 24.7 9.0 55 71-125 7-63 (247)
344 PF02310 B12-binding: B12 bind 44.9 99 0.0022 23.3 6.6 93 83-185 18-114 (121)
345 PF02558 ApbA: Ketopantoate re 44.9 89 0.0019 24.7 6.5 46 74-123 2-47 (151)
346 PRK07985 oxidoreductase; Provi 44.9 1.7E+02 0.0036 26.2 9.0 72 70-141 50-125 (294)
347 PRK07832 short chain dehydroge 44.9 2.1E+02 0.0046 25.0 10.0 31 71-101 2-32 (272)
348 PRK12810 gltD glutamate syntha 44.8 99 0.0021 30.1 7.9 77 45-121 111-212 (471)
349 COG0075 Serine-pyruvate aminot 44.8 1.3E+02 0.0028 28.6 8.3 32 93-124 80-111 (383)
350 PRK08017 oxidoreductase; Provi 44.6 2E+02 0.0044 24.6 9.6 51 71-124 4-54 (256)
351 cd05286 QOR2 Quinone oxidoredu 44.6 2.2E+02 0.0047 25.0 10.8 53 63-118 131-183 (320)
352 PRK09422 ethanol-active dehydr 44.3 1.5E+02 0.0032 26.9 8.7 55 62-120 156-211 (338)
353 cd08176 LPO Lactadehyde:propan 44.2 1.1E+02 0.0024 28.7 8.0 90 93-189 4-98 (377)
354 cd08248 RTN4I1 Human Reticulon 44.0 1.4E+02 0.003 27.1 8.5 46 69-118 163-208 (350)
355 PRK04284 ornithine carbamoyltr 44.0 1.3E+02 0.0029 27.9 8.2 53 71-123 156-216 (332)
356 PRK15409 bifunctional glyoxyla 44.0 1.6E+02 0.0034 27.2 8.7 104 71-198 146-252 (323)
357 PF00290 Trp_syntA: Tryptophan 44.0 2.4E+02 0.0052 25.2 11.3 28 87-114 134-161 (259)
358 PRK10538 malonic semialdehyde 44.0 2E+02 0.0044 24.7 9.2 67 71-140 2-70 (248)
359 cd05288 PGDH Prostaglandin deh 43.9 2.4E+02 0.0052 25.2 10.5 52 64-118 141-193 (329)
360 PRK12769 putative oxidoreducta 43.9 43 0.00094 34.1 5.4 51 71-121 328-396 (654)
361 cd05278 FDH_like Formaldehyde 43.8 1.6E+02 0.0035 26.7 8.9 53 63-118 162-214 (347)
362 TIGR01831 fabG_rel 3-oxoacyl-( 43.8 2E+02 0.0043 24.4 9.0 53 73-125 2-56 (239)
363 PRK09291 short chain dehydroge 43.8 94 0.002 26.8 7.0 53 71-123 4-57 (257)
364 TIGR02817 adh_fam_1 zinc-bindi 43.7 1.9E+02 0.0041 26.1 9.3 48 69-119 149-197 (336)
365 PRK06079 enoyl-(acyl carrier p 43.7 1.4E+02 0.0031 25.8 8.2 31 71-101 9-41 (252)
366 cd08249 enoyl_reductase_like e 43.6 1.5E+02 0.0032 27.1 8.6 48 67-118 153-200 (339)
367 PRK04148 hypothetical protein; 43.6 1.1E+02 0.0025 24.3 6.7 50 71-124 18-67 (134)
368 CHL00194 ycf39 Ycf39; Provisio 43.5 99 0.0021 28.1 7.4 50 71-123 2-51 (317)
369 PRK12859 3-ketoacyl-(acyl-carr 43.4 1.5E+02 0.0033 25.7 8.3 71 71-141 8-93 (256)
370 PRK07576 short chain dehydroge 43.3 1.9E+02 0.0041 25.3 9.0 55 70-124 10-65 (264)
371 PRK06947 glucose-1-dehydrogena 43.2 1.4E+02 0.003 25.6 8.0 54 71-124 4-59 (248)
372 PLN02928 oxidoreductase family 43.2 1.7E+02 0.0038 27.2 9.0 117 70-198 159-278 (347)
373 TIGR01318 gltD_gamma_fam gluta 43.0 1E+02 0.0022 30.1 7.6 51 71-121 142-210 (467)
374 PRK08340 glucose-1-dehydrogena 42.8 1.4E+02 0.003 25.9 8.0 31 71-101 2-32 (259)
375 PRK05650 short chain dehydroge 42.7 1.9E+02 0.0041 25.3 8.9 55 71-125 2-57 (270)
376 cd08187 BDH Butanol dehydrogen 42.6 1.4E+02 0.003 28.1 8.4 90 94-189 6-99 (382)
377 PLN02178 cinnamyl-alcohol dehy 42.5 84 0.0018 29.5 6.8 49 68-119 178-226 (375)
378 PRK10537 voltage-gated potassi 42.5 3.1E+02 0.0067 26.1 12.0 95 71-209 241-336 (393)
379 COG2242 CobL Precorrin-6B meth 42.5 2.1E+02 0.0046 24.2 8.4 115 169-287 27-151 (187)
380 cd08253 zeta_crystallin Zeta-c 42.4 2.4E+02 0.0052 24.8 10.7 52 64-118 140-191 (325)
381 PRK06101 short chain dehydroge 42.2 2.1E+02 0.0046 24.5 9.0 49 71-122 3-51 (240)
382 cd06268 PBP1_ABC_transporter_L 42.2 2.3E+02 0.0049 24.4 15.5 149 54-213 56-227 (298)
383 cd08251 polyketide_synthase po 42.1 2.4E+02 0.0051 24.6 10.6 54 62-118 114-167 (303)
384 TIGR00658 orni_carb_tr ornithi 42.1 1.8E+02 0.0038 26.7 8.6 45 79-123 158-208 (304)
385 PF13380 CoA_binding_2: CoA bi 41.9 99 0.0021 23.7 6.0 50 71-120 57-106 (116)
386 COG0493 GltD NADPH-dependent g 41.8 2.4E+02 0.0053 27.5 9.9 29 71-99 124-152 (457)
387 TIGR01327 PGDH D-3-phosphoglyc 41.7 1.9E+02 0.0042 28.6 9.5 105 71-198 139-245 (525)
388 PRK05957 aspartate aminotransf 41.7 1.7E+02 0.0037 27.4 8.9 54 71-125 90-143 (389)
389 PRK12562 ornithine carbamoyltr 41.6 1.5E+02 0.0034 27.5 8.2 53 71-123 157-217 (334)
390 TIGR03845 sulfopyru_alph sulfo 41.6 1.9E+02 0.0042 23.5 10.2 29 72-100 61-91 (157)
391 PRK07062 short chain dehydroge 41.5 2.3E+02 0.0049 24.6 9.2 33 70-102 9-41 (265)
392 PF13460 NAD_binding_10: NADH( 41.5 57 0.0012 26.6 5.0 47 73-124 2-48 (183)
393 TIGR01830 3oxo_ACP_reduc 3-oxo 41.5 1.9E+02 0.0041 24.4 8.6 53 73-125 2-56 (239)
394 cd08272 MDR6 Medium chain dehy 41.5 2.2E+02 0.0047 25.2 9.3 54 62-119 138-191 (326)
395 PRK06841 short chain dehydroge 41.4 2.2E+02 0.0047 24.4 9.0 33 70-102 16-48 (255)
396 PRK08251 short chain dehydroge 41.1 2.2E+02 0.0047 24.3 8.9 70 71-140 4-77 (248)
397 PRK02255 putrescine carbamoylt 41.1 1.7E+02 0.0037 27.3 8.4 45 79-123 164-214 (338)
398 PRK07324 transaminase; Validat 41.0 1.9E+02 0.0042 26.9 9.0 52 72-124 82-133 (373)
399 COG1167 ARO8 Transcriptional r 40.8 2.7E+02 0.0058 27.1 10.2 51 73-125 158-209 (459)
400 PRK14807 histidinol-phosphate 40.7 1.9E+02 0.0042 26.6 9.0 53 72-125 78-130 (351)
401 TIGR02638 lactal_redase lactal 40.5 1.4E+02 0.0031 28.1 8.0 32 93-124 5-37 (379)
402 PLN02477 glutamate dehydrogena 40.5 1.3E+02 0.0028 28.9 7.7 52 50-102 186-238 (410)
403 PRK04870 histidinol-phosphate 40.4 2E+02 0.0044 26.4 9.1 53 72-125 83-135 (356)
404 PRK07775 short chain dehydroge 40.4 2.4E+02 0.0052 24.7 9.2 55 71-125 12-67 (274)
405 PF09837 DUF2064: Uncharacteri 40.4 1.7E+02 0.0038 22.7 9.5 98 85-188 2-100 (122)
406 PRK05854 short chain dehydroge 40.3 1.9E+02 0.0041 26.2 8.7 72 71-142 16-91 (313)
407 cd08191 HHD 6-hydroxyhexanoate 40.2 2.4E+02 0.0051 26.7 9.5 15 174-189 78-92 (386)
408 PLN02306 hydroxypyruvate reduc 40.1 2.1E+02 0.0046 27.1 9.1 120 70-198 165-288 (386)
409 PF13580 SIS_2: SIS domain; PD 40.1 62 0.0014 25.6 4.8 34 67-100 102-137 (138)
410 cd08270 MDR4 Medium chain dehy 40.1 2.4E+02 0.0052 24.9 9.3 49 68-119 132-180 (305)
411 PRK07574 formate dehydrogenase 40.1 2.3E+02 0.0049 27.0 9.2 106 71-198 193-300 (385)
412 PRK13984 putative oxidoreducta 40.0 1.1E+02 0.0023 30.9 7.6 51 71-121 284-352 (604)
413 PRK09242 tropinone reductase; 40.0 2.2E+02 0.0048 24.5 8.8 56 70-125 10-68 (257)
414 COG0836 {ManC} Mannose-1-phosp 40.0 86 0.0019 28.9 6.1 94 51-164 60-157 (333)
415 PF13450 NAD_binding_8: NAD(P) 39.9 48 0.001 22.7 3.6 28 77-104 3-30 (68)
416 cd08290 ETR 2-enoyl thioester 39.9 1.8E+02 0.0039 26.3 8.6 58 64-121 142-200 (341)
417 PLN02586 probable cinnamyl alc 39.8 1.6E+02 0.0034 27.4 8.2 52 66-120 181-232 (360)
418 PLN03139 formate dehydrogenase 39.8 2.3E+02 0.005 27.0 9.2 106 71-198 200-307 (386)
419 COG1751 Uncharacterized conser 39.7 2.1E+02 0.0046 23.4 8.6 75 44-123 7-90 (186)
420 PF01494 FAD_binding_3: FAD bi 39.6 44 0.00094 30.3 4.4 31 72-102 3-33 (356)
421 KOG1205 Predicted dehydrogenas 39.5 89 0.0019 28.3 6.1 72 71-142 14-89 (282)
422 cd05284 arabinose_DH_like D-ar 39.5 2E+02 0.0043 26.0 8.7 49 66-118 165-214 (340)
423 PF13478 XdhC_C: XdhC Rossmann 39.4 44 0.00095 26.6 3.8 32 73-104 1-32 (136)
424 PLN02583 cinnamoyl-CoA reducta 39.4 2.2E+02 0.0047 25.5 8.9 33 70-102 7-39 (297)
425 PRK06720 hypothetical protein; 39.4 2.2E+02 0.0047 23.4 9.2 30 71-100 18-47 (169)
426 PRK12749 quinate/shikimate deh 39.4 1.7E+02 0.0037 26.5 8.1 33 71-103 125-157 (288)
427 PRK05166 histidinol-phosphate 39.4 1.9E+02 0.004 26.9 8.7 53 72-125 90-142 (371)
428 PRK12747 short chain dehydroge 39.4 1.7E+02 0.0037 25.1 8.0 54 70-123 5-60 (252)
429 PRK02102 ornithine carbamoyltr 39.4 1.6E+02 0.0035 27.4 8.0 53 71-123 156-216 (331)
430 TIGR02379 ECA_wecE TDP-4-keto- 39.3 90 0.002 29.4 6.5 55 71-125 47-101 (376)
431 PF12000 Glyco_trans_4_3: Gkyc 39.3 56 0.0012 27.2 4.5 41 163-209 55-95 (171)
432 PLN02253 xanthoxin dehydrogena 39.3 1.8E+02 0.0039 25.6 8.2 31 71-101 20-50 (280)
433 PRK10624 L-1,2-propanediol oxi 39.3 1.5E+02 0.0033 27.9 8.1 14 175-189 87-100 (382)
434 PRK09853 putative selenate red 39.2 1.2E+02 0.0026 32.8 7.9 51 71-121 540-608 (1019)
435 PRK05839 hypothetical protein; 39.2 3.2E+02 0.007 25.4 11.8 79 43-124 58-138 (374)
436 COG0800 Eda 2-keto-3-deoxy-6-p 39.1 2.6E+02 0.0056 24.2 11.3 50 74-124 44-93 (211)
437 PRK06200 2,3-dihydroxy-2,3-dih 39.1 2.5E+02 0.0054 24.3 9.1 69 70-141 7-77 (263)
438 cd08238 sorbose_phosphate_red 38.9 1.3E+02 0.0028 28.6 7.6 50 64-115 171-222 (410)
439 PRK06487 glycerate dehydrogena 38.8 2.7E+02 0.0059 25.5 9.5 99 71-198 149-249 (317)
440 PRK06718 precorrin-2 dehydroge 38.8 2.2E+02 0.0047 24.2 8.2 114 71-199 11-139 (202)
441 PRK08912 hypothetical protein; 38.6 3.3E+02 0.0072 25.3 13.6 79 43-124 61-140 (387)
442 smart00822 PKS_KR This enzymat 38.6 1.9E+02 0.0041 22.6 8.6 54 71-124 2-60 (180)
443 PRK15469 ghrA bifunctional gly 38.6 2.1E+02 0.0046 26.2 8.6 104 71-198 137-242 (312)
444 cd05289 MDR_like_2 alcohol deh 38.6 2.5E+02 0.0055 24.5 9.2 50 64-117 140-189 (309)
445 PRK08068 transaminase; Reviewe 38.5 3.3E+02 0.0072 25.4 12.0 77 45-124 70-147 (389)
446 PRK11749 dihydropyrimidine deh 38.4 1.3E+02 0.0029 29.0 7.7 53 71-123 274-332 (457)
447 cd01011 nicotinamidase Nicotin 38.3 1.8E+02 0.0039 24.4 7.7 61 56-120 129-196 (196)
448 PRK05476 S-adenosyl-L-homocyst 38.3 95 0.0021 29.9 6.5 46 71-119 213-258 (425)
449 cd08260 Zn_ADH6 Alcohol dehydr 38.2 3.1E+02 0.0067 24.9 10.5 51 63-117 160-210 (345)
450 PF03446 NAD_binding_2: NAD bi 38.1 1.3E+02 0.0028 24.4 6.6 44 73-119 4-47 (163)
451 PRK12827 short chain dehydroge 38.1 2.5E+02 0.0054 23.8 9.4 56 70-125 7-67 (249)
452 PRK07326 short chain dehydroge 38.0 2.4E+02 0.0052 23.8 8.6 32 70-101 7-38 (237)
453 cd08262 Zn_ADH8 Alcohol dehydr 38.0 2.6E+02 0.0056 25.3 9.3 54 62-118 155-208 (341)
454 cd08286 FDH_like_ADH2 formalde 38.0 2.4E+02 0.0051 25.6 9.1 51 64-118 162-213 (345)
455 PRK06463 fabG 3-ketoacyl-(acyl 37.7 2.7E+02 0.0058 24.0 10.7 69 70-141 8-76 (255)
456 cd08181 PPD-like 1,3-propanedi 37.7 1.9E+02 0.0042 26.9 8.4 22 167-189 74-96 (357)
457 COG1052 LdhA Lactate dehydroge 37.7 3.4E+02 0.0073 25.1 10.2 105 71-199 147-253 (324)
458 PRK01077 cobyrinic acid a,c-di 37.5 3.9E+02 0.0085 25.9 11.2 122 83-209 22-150 (451)
459 PRK05868 hypothetical protein; 37.4 52 0.0011 30.8 4.6 30 72-101 3-32 (372)
460 PRK12825 fabG 3-ketoacyl-(acyl 37.4 2.5E+02 0.0055 23.6 9.4 55 71-125 8-64 (249)
461 PRK07063 short chain dehydroge 37.3 2.7E+02 0.0058 24.1 8.9 71 71-141 9-83 (260)
462 cd00616 AHBA_syn 3-amino-5-hyd 37.3 2.6E+02 0.0056 25.4 9.2 53 73-125 36-88 (352)
463 PRK08642 fabG 3-ketoacyl-(acyl 37.1 2.6E+02 0.0057 23.8 9.5 51 71-123 7-58 (253)
464 PRK07067 sorbitol dehydrogenas 37.0 2.7E+02 0.0059 23.9 9.5 69 71-141 8-77 (257)
465 cd08234 threonine_DH_like L-th 37.0 3.1E+02 0.0067 24.6 9.9 54 62-118 153-206 (334)
466 PLN03049 pyridoxine (pyridoxam 36.9 2.7E+02 0.0058 27.2 9.4 49 71-119 61-116 (462)
467 PRK06847 hypothetical protein; 36.9 52 0.0011 30.5 4.5 31 71-101 5-35 (375)
468 PF00208 ELFV_dehydrog: Glutam 36.8 1.3E+02 0.0027 26.6 6.6 52 51-102 12-64 (244)
469 PRK09730 putative NAD(P)-bindi 36.8 2.6E+02 0.0057 23.7 9.5 55 71-125 3-59 (247)
470 PF02887 PK_C: Pyruvate kinase 36.7 99 0.0021 23.6 5.3 44 164-213 7-50 (117)
471 cd08254 hydroxyacyl_CoA_DH 6-h 36.7 3.1E+02 0.0068 24.5 10.7 54 63-120 160-213 (338)
472 cd08279 Zn_ADH_class_III Class 36.7 3.4E+02 0.0074 24.9 11.0 53 63-118 177-229 (363)
473 TIGR01829 AcAcCoA_reduct aceto 36.6 2E+02 0.0044 24.3 7.9 55 71-125 2-58 (242)
474 COG1433 Uncharacterized conser 36.4 2.1E+02 0.0045 22.4 7.3 48 83-133 55-102 (121)
475 PRK08339 short chain dehydroge 36.4 2.3E+02 0.0049 24.8 8.3 31 71-101 10-40 (263)
476 smart00460 TGc Transglutaminas 36.3 48 0.001 22.1 3.1 26 76-101 7-32 (68)
477 PRK09126 hypothetical protein; 36.2 48 0.001 31.0 4.2 29 73-101 6-34 (392)
478 PRK08416 7-alpha-hydroxysteroi 36.2 2.9E+02 0.0062 23.9 9.3 72 70-141 9-84 (260)
479 PRK07200 aspartate/ornithine c 36.1 1.4E+02 0.003 28.6 7.1 44 80-123 205-254 (395)
480 PRK14805 ornithine carbamoyltr 36.1 1.3E+02 0.0028 27.6 6.7 45 79-123 157-207 (302)
481 PF12831 FAD_oxidored: FAD dep 36.1 48 0.001 31.8 4.2 32 73-104 2-33 (428)
482 COG1454 EutG Alcohol dehydroge 35.9 3.6E+02 0.0079 25.6 9.8 98 94-196 6-105 (377)
483 PRK08220 2,3-dihydroxybenzoate 35.9 2.6E+02 0.0056 23.9 8.6 34 70-103 9-42 (252)
484 PRK01713 ornithine carbamoyltr 35.6 1.2E+02 0.0027 28.1 6.6 52 72-123 158-217 (334)
485 PRK07856 short chain dehydroge 35.4 2.3E+02 0.005 24.3 8.2 33 70-102 7-39 (252)
486 PRK01438 murD UDP-N-acetylmura 35.4 1.5E+02 0.0032 28.8 7.6 51 71-121 17-69 (480)
487 COG0169 AroE Shikimate 5-dehyd 35.3 1.2E+02 0.0025 27.6 6.2 73 29-102 85-158 (283)
488 PRK05693 short chain dehydroge 35.3 3E+02 0.0066 24.0 10.6 66 71-140 3-68 (274)
489 PRK07023 short chain dehydroge 35.3 2.2E+02 0.0048 24.3 8.0 50 71-124 3-52 (243)
490 PRK07366 succinyldiaminopimela 35.2 3.7E+02 0.0081 25.0 12.6 110 44-156 67-179 (388)
491 PRK07066 3-hydroxybutyryl-CoA 35.2 3.6E+02 0.0079 24.9 13.7 33 71-103 8-40 (321)
492 COG2518 Pcm Protein-L-isoaspar 35.1 3E+02 0.0064 23.8 8.7 108 56-185 60-171 (209)
493 PLN02494 adenosylhomocysteinas 35.1 1.1E+02 0.0025 29.9 6.4 90 71-187 255-344 (477)
494 PRK06753 hypothetical protein; 35.0 58 0.0013 30.2 4.5 30 73-102 3-32 (373)
495 cd08255 2-desacetyl-2-hydroxye 35.0 2.8E+02 0.0061 24.1 8.8 51 62-116 91-142 (277)
496 PRK12770 putative glutamate sy 34.9 1.7E+02 0.0037 27.0 7.6 53 71-123 173-231 (352)
497 TIGR03801 asp_4_decarbox aspar 34.8 4.7E+02 0.01 26.0 11.9 82 43-124 126-215 (521)
498 PRK12831 putative oxidoreducta 34.8 1.1E+02 0.0023 29.8 6.4 30 71-100 141-170 (464)
499 PRK13982 bifunctional SbtC-lik 34.6 97 0.0021 30.4 5.9 53 77-138 280-332 (475)
500 PRK06108 aspartate aminotransf 34.6 3.7E+02 0.0081 24.8 12.4 76 44-124 60-137 (382)
No 1
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=1e-68 Score=475.13 Aligned_cols=290 Identities=58% Similarity=0.926 Sum_probs=274.4
Q ss_pred hhhhhhhccCCcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHH
Q 020805 9 AKDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFM 88 (321)
Q Consensus 9 ~~~i~~~~~~TPL~~~~~l~~~~g~~v~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~AlA~a 88 (321)
++.+.+.+|+|||++++++....+++||+|+|++||+||.|||.+.+|+.+|+++|.++|| .+||++||||+|++||+.
T Consensus 2 ~~~~~~~iG~TPlvrL~~~~~~~~~~i~~KlE~~NP~gSvKDR~A~~mI~~Ae~~G~l~pG-~tIVE~TSGNTGI~LA~v 80 (300)
T COG0031 2 YESILDLIGNTPLVRLNRLSPGTGVEIYAKLESFNPGGSVKDRIALYMIEDAEKRGLLKPG-GTIVEATSGNTGIALAMV 80 (300)
T ss_pred ccchHHHhCCCCcEeecccCCCCCceEEEEhhhcCCCCchhHHHHHHHHHHHHHcCCCCCC-CEEEEcCCChHHHHHHHH
Confidence 4568899999999999999988789999999999999999999999999999999999999 579999999999999999
Q ss_pred HHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCC-hhHHHHHHHHHHHhCCC-eEEcCCCCCCcchhhhhhchHH
Q 020805 89 AAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKG-MKGAVQKAEEILAKTPN-AYMLQQFENPANPKIHYETTGP 166 (321)
Q Consensus 89 a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~-~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~ 166 (321)
|+.+|+++++|||+.++.+|+++|++|||+|+.++...+ +..+.+++++++++.++ .+|.+||+||.||.+||.+++.
T Consensus 81 aa~~Gy~~iivmP~~~S~er~~~l~a~GAevi~t~~~~g~~~~a~~~a~el~~~~p~~~~~~~Qf~NpaN~~aH~~tT~~ 160 (300)
T COG0031 81 AAAKGYRLIIVMPETMSQERRKLLRALGAEVILTPGAPGNMKGAIERAKELAAEIPGYAVWLNQFENPANPEAHYETTGP 160 (300)
T ss_pred HHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEcCCCCCchHHHHHHHHHHHHhCCCceEchhhcCCCccHHHHHhhhHH
Confidence 999999999999999999999999999999999998444 78899999999999887 6777899999999999999999
Q ss_pred HHHhhhCCCCCEEEEecCCchhHHHHHHHHHhcCCCcEEEEEecCCCCccCCCCCCCcccccccCCCCcccccccccCEE
Q 020805 167 ELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGIGAGFVPGVLEVNIIDEV 246 (321)
Q Consensus 167 Ei~~ql~~~~d~vv~p~G~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~g~~~~~~~~gl~~~~~~~~~~~~~~d~~ 246 (321)
||++|+++.+|+||+.+|||||++|++++||+.+|++++++|||++|+.+..|. .++.++||+.+++|.+++.+.+|++
T Consensus 161 EI~~~~~g~~d~fVagvGTGGTitGvar~Lk~~~p~i~iv~vdP~~S~~~~~G~-g~~~i~GIG~~~ip~~~~~~~iD~v 239 (300)
T COG0031 161 EIWQQTDGKVDAFVAGVGTGGTITGVARYLKERNPNVRIVAVDPEGSVLLSGGE-GPHKIEGIGAGFVPENLDLDLIDEV 239 (300)
T ss_pred HHHHHhCCCCCEEEEeCCcchhHHHHHHHHHhhCCCcEEEEECCCCCcccCCCC-CCcccCCCCCCcCCcccccccCceE
Confidence 999999888999999999999999999999999999999999999999887666 8889999999999988899999999
Q ss_pred EEeCHHHHHHHHHHHHHhcCCeEecchHHHHHHHHHHHhcCCCCCCEEEEEecCC
Q 020805 247 VQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVCSQFA 301 (321)
Q Consensus 247 ~~V~d~e~~~a~~~l~~~~Gi~~~pss~~a~aa~~~~~~~~~~~~~~vv~i~tgg 301 (321)
+.|+|+|+++++|+|+++||+++++|||++++++++++++. .++++||+|+|+.
T Consensus 240 ~~V~d~~A~~~~r~La~~eGilvG~SsGA~~~aa~~~a~~~-~~g~~IVti~pD~ 293 (300)
T COG0031 240 IRVSDEEAIATARRLAREEGLLVGISSGAALAAALKLAKEL-PAGKTIVTILPDS 293 (300)
T ss_pred EEECHHHHHHHHHHHHHHhCeeecccHHHHHHHHHHHHHhc-CCCCeEEEEECCC
Confidence 99999999999999999999999999999999999999876 3699999999983
No 2
>PLN02565 cysteine synthase
Probab=100.00 E-value=9.8e-68 Score=485.25 Aligned_cols=311 Identities=84% Similarity=1.240 Sum_probs=280.0
Q ss_pred hhhhhhhhccCCcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHH
Q 020805 8 IAKDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAF 87 (321)
Q Consensus 8 ~~~~i~~~~~~TPL~~~~~l~~~~g~~v~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~AlA~ 87 (321)
..+.+.+.+++|||++++.++...+.+||+|+|++|||||||||++.+++..+.++|.+.+|.+.||++|+||||+|+|+
T Consensus 5 ~~~~~~~~ig~TPLv~l~~l~~~~~~~i~~K~E~~nPtGSfKdR~A~~~l~~~~~~g~~~~g~~~vv~aSsGN~g~alA~ 84 (322)
T PLN02565 5 IAKDVTELIGKTPLVYLNNVVDGCVARIAAKLEMMEPCSSVKDRIGYSMITDAEEKGLIKPGESVLIEPTSGNTGIGLAF 84 (322)
T ss_pred hhhhHHHHhCCCceEEccccCCCCCceEEEEecccCCccchHHHHHHHHHHHHHHcCCCCCCCcEEEEECCChHHHHHHH
Confidence 45678999999999999988766668999999999999999999999999999999988888778999999999999999
Q ss_pred HHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEcCCCCCCcchhhhhhchHHH
Q 020805 88 MAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPE 167 (321)
Q Consensus 88 aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~E 167 (321)
+|+.+|++|+||||+++++.|+++++.|||+|+.+++..+++++.+.+++++++.+++||++||+|+.|+..||+|+++|
T Consensus 85 ~a~~~G~~~~ivvp~~~~~~k~~~i~~~GA~V~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~q~~n~~n~~~~~~t~a~E 164 (322)
T PLN02565 85 MAAAKGYKLIITMPASMSLERRIILLAFGAELVLTDPAKGMKGAVQKAEEILAKTPNSYILQQFENPANPKIHYETTGPE 164 (322)
T ss_pred HHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEEeCCCCCcHHHHHHHHHHHHhCCCcEeecccCCHhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999875556788889999988766789999999999988899999999
Q ss_pred HHhhhCCCCCEEEEecCCchhHHHHHHHHHhcCCCcEEEEEecCCCCccCCCCCCCcccccccCCCCcccccccccCEEE
Q 020805 168 LWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGIGAGFVPGVLEVNIIDEVV 247 (321)
Q Consensus 168 i~~ql~~~~d~vv~p~G~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~g~~~~~~~~gl~~~~~~~~~~~~~~d~~~ 247 (321)
|++|+++.||+||+|+|+||+++|+++++|+.+|++|||+|||++++.+.++++.++.++|++.+..|..+..+.+|+++
T Consensus 165 i~~q~~~~~d~vv~~vG~GG~l~Gi~~~lk~~~p~~kvi~Vep~~s~~~~~g~~~~~~~~glg~~~~~~~~~~~~vd~~v 244 (322)
T PLN02565 165 IWKGTGGKVDAFVSGIGTGGTITGAGKYLKEQNPDIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVDLLDEVV 244 (322)
T ss_pred HHHhcCCCCCEEEEcCCchHHHHHHHHHHHHhCCCCEEEEEecCCCccccCCCCCCccCCCCCCCCCCCcCCHhHCCEEE
Confidence 99999767999999999999999999999999999999999999998887777777788999887777777778899999
Q ss_pred EeCHHHHHHHHHHHHHhcCCeEecchHHHHHHHHHHHhcCCCCCCEEEEEecCCC-C-----CCHHHHHhhcCCccc
Q 020805 248 QVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVCSQFAC-I-----TSDSWLIAITCMSFS 318 (321)
Q Consensus 248 ~V~d~e~~~a~~~l~~~~Gi~~~pss~~a~aa~~~~~~~~~~~~~~vv~i~tgg~-~-----~~~~~~~~~~~~~~~ 318 (321)
.|+|+|+++++++|++++|+++||+||+++++++++++....++++||+|+||+. . .++.|...-..|-|+
T Consensus 245 ~V~d~ea~~a~~~l~~~~gi~vg~ssga~laaa~~~a~~~~~~~~~vV~v~~d~G~ky~~~~~~~~~~~~~~~~~~~ 321 (322)
T PLN02565 245 QVSSDEAIETAKLLALKEGLLVGISSGAAAAAAIKIAKRPENAGKLIVVIFPSFGERYLSSVLFESVKKEAENMVFE 321 (322)
T ss_pred EECHHHHHHHHHHHHHHhCcEEeccHHHHHHHHHHHHHhcCCCCCeEEEEECCCccccCCchhhHHHHHHHhcCccC
Confidence 9999999999999999999999999999999999998766556889999999943 3 334555555555554
No 3
>PLN03013 cysteine synthase
Probab=100.00 E-value=3.1e-67 Score=490.87 Aligned_cols=301 Identities=73% Similarity=1.163 Sum_probs=275.7
Q ss_pred chhhhhhhhccCCcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHH
Q 020805 7 NIAKDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLA 86 (321)
Q Consensus 7 ~~~~~i~~~~~~TPL~~~~~l~~~~g~~v~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~AlA 86 (321)
+++++|.+.+|+|||++++.+++..+++||+|+|++|||||||||++.+++.+++++|.+.+|+.+||++|+||||+|+|
T Consensus 112 ~~~~~i~~~iG~TPLv~l~~l~~~~g~~Iy~KlE~lNPtGSfKdR~A~~~l~~a~~~G~l~pG~~~VVeaSSGN~G~ALA 191 (429)
T PLN03013 112 NIADNVSQLIGKTPMVYLNSIAKGCVANIAAKLEIMEPCCSVKDRIGYSMVTDAEQKGFISPGKSVLVEPTSGNTGIGLA 191 (429)
T ss_pred HHHHHHHhcCCCCCeEECcccccccCCeEEEEeccCCCccccHHHHHHHHHHHHHHcCCcCCCCcEEEEECCcHHHHHHH
Confidence 47788999999999999999988777899999999999999999999999999999999999877899999999999999
Q ss_pred HHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEcCCCCCCcchhhhhhchHH
Q 020805 87 FMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGP 166 (321)
Q Consensus 87 ~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 166 (321)
++|+.+|++|+||||+.+++.|+++++.|||+|+.+++..+++++.+.+++++++.+++||++||+||.|+.+||.++|+
T Consensus 192 ~~a~~~G~~~~VvvP~~~s~~K~~~ira~GAeVi~v~~~~~~~~a~~~A~ela~~~~g~~~~~qy~Np~n~~ah~~ttg~ 271 (429)
T PLN03013 192 FIAASRGYRLILTMPASMSMERRVLLKAFGAELVLTDPAKGMTGAVQKAEEILKNTPDAYMLQQFDNPANPKIHYETTGP 271 (429)
T ss_pred HHHHHcCCCEEEEECCCCcHHHHHHHHHcCCEEEEECCCCChHHHHHHHHHHHhhcCCeEeCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999987655678889999998886689999999999997789999999
Q ss_pred HHHhhhCCCCCEEEEecCCchhHHHHHHHHHhcCCCcEEEEEecCCCCccCCCCCCCcccccccCCCCcccccccccCEE
Q 020805 167 ELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGIGAGFVPGVLEVNIIDEV 246 (321)
Q Consensus 167 Ei~~ql~~~~d~vv~p~G~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~g~~~~~~~~gl~~~~~~~~~~~~~~d~~ 246 (321)
||++|++++||+||+|+||||+++|+++++|+.+|+++||+|||++++.+.++++.++.++|++.+.+|+.+++..+|++
T Consensus 272 EI~eq~~~~~D~vV~~vGtGGtisGiar~lKe~~P~vkVigVep~gs~~l~~g~~~~~~i~Glg~~~ip~~~~~~~vD~v 351 (429)
T PLN03013 272 EIWDDTKGKVDIFVAGIGTGGTITGVGRFIKEKNPKTQVIGVEPTESDILSGGKPGPHKIQGIGAGFIPKNLDQKIMDEV 351 (429)
T ss_pred HHHHhcCCCCCEEEEeCCccHHHHHHHHHHHhhCCCCEEEEEEeCCCchhhCCCCCCcccCcccCCcCCHhHHHHhccEE
Confidence 99999977899999999999999999999999999999999999999888777777788899998888888888899999
Q ss_pred EEeCHHHHHHHHHHHHHhcCCeEecchHHHHHHHHHHHhcCCCCCCEEEEEec--CCCCCCHH
Q 020805 247 VQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVCSQ--FACITSDS 307 (321)
Q Consensus 247 ~~V~d~e~~~a~~~l~~~~Gi~~~pss~~a~aa~~~~~~~~~~~~~~vv~i~t--gg~~~~~~ 307 (321)
+.|+|+|+++++++|++++|+++||++|+++++++++++....++++||++++ ||..|...
T Consensus 352 v~VsD~ea~~a~r~La~~eGi~vG~SSGAalaAalkla~~~~~~g~~IVv~i~~d~g~~Y~~~ 414 (429)
T PLN03013 352 IAISSEEAIETAKQLALKEGLMVGISSGAAAAAAIKVAKRPENAGKLIAVSLFASGRDIYTPR 414 (429)
T ss_pred EEECHHHHHHHHHHHHHHcCCEEecCHHHHHHHHHHHhhhccCCCCEEEEEEcCCCchhchhh
Confidence 99999999999999999999999999999999999998765556788766664 35555444
No 4
>PLN02556 cysteine synthase/L-3-cyanoalanine synthase
Probab=100.00 E-value=4.7e-66 Score=480.69 Aligned_cols=314 Identities=57% Similarity=0.946 Sum_probs=282.8
Q ss_pred cchhhhhhhhccCCcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHH
Q 020805 6 SNIAKDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGL 85 (321)
Q Consensus 6 ~~~~~~i~~~~~~TPL~~~~~l~~~~g~~v~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~Al 85 (321)
+++++++.+.+|+|||+++++++...|++||+|+|++|||||||||++.+++.+++++|.+.||.++||++|+||||+|+
T Consensus 47 ~~~~~~v~~~ig~TPl~~l~~l~~~~g~~I~~KlE~~nPtGS~KdR~A~~~l~~a~~~G~i~pG~~~vV~aSsGN~G~al 126 (368)
T PLN02556 47 TKIKTDASQLIGKTPLVYLNKVTEGCGAYIAAKQEMFQPTSSIKDRPALAMIEDAEKKNLITPGKTTLIEPTSGNMGISL 126 (368)
T ss_pred chhhhhHHHhcCCCccEEccccccccCCEEEEEecccCCccchHHHHHHHHHHHHHHcCCcCCCCCEEEEeCCchHHHHH
Confidence 34668899999999999999999888899999999999999999999999999999999999998889999999999999
Q ss_pred HHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEcCCCCCCcchhhhhhchH
Q 020805 86 AFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTG 165 (321)
Q Consensus 86 A~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 165 (321)
|++|+.+|++|+||||+.++..|+++++.|||+|+.++...+.....+.+++++++.++++|++||+||.++..||.+++
T Consensus 127 A~~a~~~G~~~~ivvp~~~~~~k~~~lr~~GA~Vi~~~~~~~~~~~~~~a~~l~~~~~~~~~~~q~~np~~~~~g~~ttg 206 (368)
T PLN02556 127 AFMAAMKGYKMILTMPSYTSLERRVTMRAFGAELVLTDPTKGMGGTVKKAYELLESTPDAFMLQQFSNPANTQVHFETTG 206 (368)
T ss_pred HHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECCCCCccHHHHHHHHHHHhcCCCCccCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998644445677888888887778899999999999667999999
Q ss_pred HHHHhhhCCCCCEEEEecCCchhHHHHHHHHHhcCCCcEEEEEecCCCCccCCCCCCCcccccccCCCCcccccccccCE
Q 020805 166 PELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGIGAGFVPGVLEVNIIDE 245 (321)
Q Consensus 166 ~Ei~~ql~~~~d~vv~p~G~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~g~~~~~~~~gl~~~~~~~~~~~~~~d~ 245 (321)
+||++|+.+.+|+||+|+|||||++|+++++|+.+|+++||+|||++++.+..+++.++.+.|++.+..|+.++.+.+|+
T Consensus 207 ~EI~eq~~~~~D~vV~~vGtGGt~aGv~~~lk~~~p~~kVigVep~~~~~~~~g~~~~~~i~g~g~~~~p~~~~~~~~d~ 286 (368)
T PLN02556 207 PEIWEDTLGQVDIFVMGIGSGGTVSGVGKYLKSKNPNVKIYGVEPAESNVLNGGKPGPHHITGNGVGFKPDILDMDVMEK 286 (368)
T ss_pred HHHHHhcCCCCCEEEEcCCcchHHHHHHHHHHHhCCCCEEEEEeeCCCccccCCCCCCeeeeeccCCCCccccchhhCCe
Confidence 99999986689999999999999999999999999999999999999988877777777778888776677788889999
Q ss_pred EEEeCHHHHHHHHHHHHHhcCCeEecchHHHHHHHHHHHhcCCCCCCEEEEEecCC------CCCCHHHHHhhcCCcccc
Q 020805 246 VVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVCSQFA------CITSDSWLIAITCMSFSF 319 (321)
Q Consensus 246 ~~~V~d~e~~~a~~~l~~~~Gi~~~pss~~a~aa~~~~~~~~~~~~~~vv~i~tgg------~~~~~~~~~~~~~~~~~~ 319 (321)
++.|+|+|+++++++|++++|+++||+||++++++++++++...++++||+|+||. .+.+++|+++-..|-+++
T Consensus 287 ~v~Vsd~ea~~a~r~l~~~eGi~vg~ssgA~~~aal~~a~~~~~~~~~IV~v~~d~g~kY~~~~~~~~~~~~~~~~~~~~ 366 (368)
T PLN02556 287 VLEVSSEDAVNMARELALKEGLMVGISSGANTVAALRLAKMPENKGKLIVTVHPSFGERYLSSVLFQELRKEAENMQPVS 366 (368)
T ss_pred EEEECHHHHHHHHHHHHHHcCCEEecCHHHHHHHHHHHhhhccCCcCEEEEEECCCCcccCChhhhHHHHHHHHhcCCcC
Confidence 99999999999999999999999999999999999998876544688999999994 345778888777665543
No 5
>PLN00011 cysteine synthase
Probab=100.00 E-value=1.6e-64 Score=465.29 Aligned_cols=300 Identities=70% Similarity=1.088 Sum_probs=269.8
Q ss_pred hhhhhhhhccCCcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHH
Q 020805 8 IAKDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAF 87 (321)
Q Consensus 8 ~~~~i~~~~~~TPL~~~~~l~~~~g~~v~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~AlA~ 87 (321)
..+.+.+.+++|||+++++++...+.+||+|+|++|||||||||++.+++..++++|.+.||.++||++|+||||+|+|+
T Consensus 7 ~~~~~~~~~g~TPl~~l~~l~~~~g~~i~~K~E~~nPtGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~aSsGN~g~alA~ 86 (323)
T PLN00011 7 IKNDVTELIGNTPMVYLNNIVDGCVARIAAKLEMMEPCSSVKDRIAYSMIKDAEDKGLITPGKSTLIEATAGNTGIGLAC 86 (323)
T ss_pred HHhhHHHHhCCCceEEccccCCCCCceEEEEecccCCccccchHHHHHHHHHHHHcCCCCCCCcEEEEeCCChHHHHHHH
Confidence 34467889999999999999876668999999999999999999999999999999998888678999999999999999
Q ss_pred HHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEcCCCCCCcchhhhhhchHHH
Q 020805 88 MAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPE 167 (321)
Q Consensus 88 aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~E 167 (321)
+|+.+|++|+||||+++++.|+++++.+||+|+.++.+...++..+.+++++++.++++|++||+|+.++..||.+++.|
T Consensus 87 ~a~~~G~~~~ivvp~~~~~~k~~~i~~~GA~V~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~n~~n~~~~~~t~~~E 166 (323)
T PLN00011 87 IGAARGYKVILVMPSTMSLERRIILRALGAEVHLTDQSIGLKGMLEKAEEILSKTPGGYIPQQFENPANPEIHYRTTGPE 166 (323)
T ss_pred HHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEECCCcChHHHHHHHHHHHHhCCCeEEeccccCCccHHHHHHHHHHH
Confidence 99999999999999999999999999999999999975444566777888888766789999999999887899999999
Q ss_pred HHhhhCCCCCEEEEecCCchhHHHHHHHHHhcCCCcEEEEEecCCCCccCCCCCCCcccccccCCCCcccccccccCEEE
Q 020805 168 LWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGIGAGFVPGVLEVNIIDEVV 247 (321)
Q Consensus 168 i~~ql~~~~d~vv~p~G~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~g~~~~~~~~gl~~~~~~~~~~~~~~d~~~ 247 (321)
|++|+.++||+||+|+|+|||++|+++++|+.+|+++||+|||++++.+..+++..+.++|++.+..|..+....+|+++
T Consensus 167 I~~q~~~~~D~iv~~vGtGGt~aGi~~~lk~~~~~~kvigVe~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~d~~v 246 (323)
T PLN00011 167 IWRDSAGKVDILVAGVGTGGTATGVGKFLKEKNKDIKVCVVEPVESAVLSGGQPGPHLIQGIGSGIIPFNLDLTIVDEII 246 (323)
T ss_pred HHHhcCCCCCEEEEeCCchHHHHHHHHHHHhhCCCCEEEEEecCCCcccCCCCCCCCCCCCCCCCCCCcccChhhCCeEE
Confidence 99999668999999999999999999999999999999999999998887777777778899877667777778899999
Q ss_pred EeCHHHHHHHHHHHHHhcCCeEecchHHHHHHHHHHHhcCCCCCCEEEEEe-cCCCCCCHH
Q 020805 248 QVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVCS-QFACITSDS 307 (321)
Q Consensus 248 ~V~d~e~~~a~~~l~~~~Gi~~~pss~~a~aa~~~~~~~~~~~~~~vv~i~-tgg~~~~~~ 307 (321)
.|+|+|+++++++|++++|+++||+||++++++++++++...++++||+|+ ++|+.+.+.
T Consensus 247 ~V~d~e~~~a~~~l~~~~Gi~~~~ssga~laaa~~~~~~~~~~~~~vv~i~~d~G~ky~~~ 307 (323)
T PLN00011 247 QVTGEEAIETAKLLALKEGLLVGISSGAAAAAALKVAKRPENAGKLIVVIFPSGGERYLST 307 (323)
T ss_pred EECHHHHHHHHHHHHHhcCCeEcccHHHHHHHHHHHHHhccCCCCeEEEEECCCccccCCh
Confidence 999999999999999999999999999999999998876545678899999 556666543
No 6
>COG1171 IlvA Threonine dehydratase [Amino acid transport and metabolism]
Probab=100.00 E-value=8.3e-66 Score=464.30 Aligned_cols=301 Identities=23% Similarity=0.285 Sum_probs=271.0
Q ss_pred hhhhhhhhccCCcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHH
Q 020805 8 IAKDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAF 87 (321)
Q Consensus 8 ~~~~i~~~~~~TPL~~~~~l~~~~g~~v~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~AlA~ 87 (321)
.+.+++..+.+|||++++.|++.+|++||+|+|++||+||||.||+++.+..+.+++.. ...||++|+||||+++|+
T Consensus 15 A~~ri~~~~~~TPL~~s~~Ls~~~g~~v~lK~E~lQ~~gSFK~RGA~n~i~~Ls~e~~~---~~gViaaSaGNHaQGvA~ 91 (347)
T COG1171 15 AAARLKGVVNPTPLQRSPSLSERLGAEIYLKRENLQPVGSFKIRGAYNKLSSLSEEEER---AAGVIAASAGNHAQGVAY 91 (347)
T ss_pred HHHHHhCcccCCCcccchhhHHhhCceEEEeeccCcccccchhhhHHHHHHhcChhhhh---cCceEEecCCcHHHHHHH
Confidence 45689999999999999999999999999999999999999999999999987643221 256999999999999999
Q ss_pred HHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEcCCCCCCcchhhhhhchHHH
Q 020805 88 MAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPE 167 (321)
Q Consensus 88 aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~E 167 (321)
+|+++|++++||||..+|..|++.++.||++|++++. +|+++.+.+++++++. |+.|++|||+|.. ++||+|++.|
T Consensus 92 aa~~lGi~a~IvMP~~tp~~Kv~a~r~~GaeVil~g~--~~dda~~~a~~~a~~~-G~~~i~pfD~p~v-iAGQGTi~lE 167 (347)
T COG1171 92 AAKRLGIKATIVMPETTPKIKVDATRGYGAEVILHGD--NFDDAYAAAEELAEEE-GLTFVPPFDDPDV-IAGQGTIALE 167 (347)
T ss_pred HHHHhCCCEEEEecCCCcHHHHHHHHhcCCEEEEECC--CHHHHHHHHHHHHHHc-CCEEeCCCCCcce-eecccHHHHH
Confidence 9999999999999999999999999999999999996 5799999999999998 9999999999998 8999999999
Q ss_pred HHhhhCCCCCEEEEecCCchhHHHHHHHHHhcCCCcEEEEEecCCCCccC----CCC-C-----CCcccccccCCC---C
Q 020805 168 LWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLS----GGK-P-----GPHKIQGIGAGF---V 234 (321)
Q Consensus 168 i~~ql~~~~d~vv~p~G~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~----~g~-~-----~~~~~~gl~~~~---~ 234 (321)
|++|++..||+||||+|+||+++|++.++|...|+++||||||++++++. .|+ + ..+.++|++... .
T Consensus 168 ileq~~~~~d~v~vpvGGGGLisGia~~~k~~~p~~~vIGVEp~~a~~~~~Sl~~G~~~~~~~~~~tiaDG~av~~~g~~ 247 (347)
T COG1171 168 ILEQLPDLPDAVFVPVGGGGLISGIATALKALSPEIKVIGVEPEGAPSMYASLKAGKIVVVLPDVGTIADGLAVKRPGDL 247 (347)
T ss_pred HHHhccccCCEEEEecCccHHHHHHHHHHHHhCCCCeEEEEeeCCChHHHHHHHcCCceeecCCCCccccccccCCCCHH
Confidence 99999655799999999999999999999999999999999999998764 342 2 234567887543 4
Q ss_pred cccccccccCEEEEeCHHHHHHHHHHHHHhcCCeEecchHHHHHHHHHHHhcCCCCCCEEEEEecCCCCCCHHHHHhhcC
Q 020805 235 PGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVCSQFACITSDSWLIAITC 314 (321)
Q Consensus 235 ~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~~Gi~~~pss~~a~aa~~~~~~~~~~~~~~vv~i~tgg~~~~~~~~~~~~~ 314 (321)
++.++++++|+++.|+|+|+.++|+++++.+++++||++|++++++++...+. .++++|++|+||||+|+..+.+...+
T Consensus 248 tf~i~~~~vd~~v~V~e~ei~~am~~l~~~~~iI~EpaGAlalAal~~~~~~~-~~g~~v~~ilSGgN~d~~~~~~v~~~ 326 (347)
T COG1171 248 TFEILRELVDDIVLVDEDEICAAMRDLFERTKIIAEPAGALALAALLAGKIEP-LQGKTVVVILSGGNIDFERLAEVLER 326 (347)
T ss_pred HHHHHHHcCCcEEEECHHHHHHHHHHHHhcCCeeccccHHHHHHHHHhhhhhh-cCCCeEEEEecCCCCCHHHHHHHHhc
Confidence 67788999999999999999999999999999999999999999999877664 57888999999999999999887664
Q ss_pred Cc
Q 020805 315 MS 316 (321)
Q Consensus 315 ~~ 316 (321)
..
T Consensus 327 ~~ 328 (347)
T COG1171 327 AL 328 (347)
T ss_pred cc
Confidence 43
No 7
>TIGR01136 cysKM cysteine synthases. This model discriminates cysteine synthases (EC 2.5.1.47) (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblamnce to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded from the seed and score below the trusted cutoff.
Probab=100.00 E-value=1.6e-64 Score=461.59 Aligned_cols=293 Identities=62% Similarity=0.992 Sum_probs=266.2
Q ss_pred hhhccCCcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHc
Q 020805 13 TELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAK 92 (321)
Q Consensus 13 ~~~~~~TPL~~~~~l~~~~g~~v~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~AlA~aa~~~ 92 (321)
...+++|||+++++|+...|.+||+|+|++|||||||+|++.+++..++++|.+.+| ++|+++|+||||+|+|++|+++
T Consensus 2 ~~~vg~TPL~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g-~~vv~aSsGN~g~alA~~a~~~ 80 (299)
T TIGR01136 2 EELIGNTPLVRLNRLAPGCDARVLAKLEGRNPSGSVKDRIALSMIEDAEKRGLLKPG-DTIIEATSGNTGIALAMVAAAK 80 (299)
T ss_pred ccccCCCceEEccccCCCCCceEEEEEcccCCCCCccHHHHHHHHHHHHHcCCCCCC-CEEEEeCCChHHHHHHHHHHHc
Confidence 467899999999999988888999999999999999999999999999999987766 5699999999999999999999
Q ss_pred CCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEcCCCCCCcchhhhhhchHHHHHhhh
Q 020805 93 QYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGS 172 (321)
Q Consensus 93 G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~Ei~~ql 172 (321)
|++|+||||+++++.|+++++.+||+|+.++++.+++++.+.+++++++.+++++++||+|+.+++.||++++.||++|+
T Consensus 81 G~~~~i~vp~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~ql 160 (299)
T TIGR01136 81 GYKLILTMPETMSLERRKLLRAYGAELILTPAEEGMKGAIDKAEELAAETNKYVMLDQFENPANPEAHYKTTGPEIWRDT 160 (299)
T ss_pred CCcEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHhhCCCeEecCCCCCchhHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999997655788999999998876568899999999988889999999999999
Q ss_pred CCCCCEEEEecCCchhHHHHHHHHHhcCCCcEEEEEecCCCCccCCCCCCCcccccccCCCCcccccccccCEEEEeCHH
Q 020805 173 GGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGIGAGFVPGVLEVNIIDEVVQVSSD 252 (321)
Q Consensus 173 ~~~~d~vv~p~G~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~g~~~~~~~~gl~~~~~~~~~~~~~~d~~~~V~d~ 252 (321)
+++||+||+|+|+||+++|+++++|+.+|.++||+|||++++.+...++..+.+.+++.+..|+.+.++.+|+++.|+|+
T Consensus 161 ~~~~d~iv~~vG~Gg~~~G~~~~~~~~~~~~~vi~Ve~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~d~~~~V~d~ 240 (299)
T TIGR01136 161 DGRIDHFVAGVGTGGTITGVGRYLKEQNPNIKIVAVEPAESPVLSGGEPGPHKIQGIGAGFIPKILDLSLIDEVITVSDE 240 (299)
T ss_pred CCCCCEEEEcCchhHHHHHHHHHHHHhCCCCEEEEEecCCCccccCCCCCCccCCCCCCCCCCccCChhhCCEEEEECHH
Confidence 76799999999999999999999999999999999999999888765555556677777767778888889999999999
Q ss_pred HHHHHHHHHHHhcCCeEecchHHHHHHHHHHHhcCCCCCCEEEEEecC-CCCCCH
Q 020805 253 EAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVCSQF-ACITSD 306 (321)
Q Consensus 253 e~~~a~~~l~~~~Gi~~~pss~~a~aa~~~~~~~~~~~~~~vv~i~tg-g~~~~~ 306 (321)
|+++++++|++.+|+++||+||+++++++++.++...++++||+|+|| |..+.+
T Consensus 241 e~~~a~~~l~~~~gi~~e~ssaa~~a~~~~~~~~~~~~~~~vv~i~~d~g~ky~~ 295 (299)
T TIGR01136 241 DAIETARRLAREEGILVGISSGAAVAAALKLAKRLENADKVIVAILPDTGERYLS 295 (299)
T ss_pred HHHHHHHHHHHHhCceEcchHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccC
Confidence 999999999999999999999999999999887654568999999999 445544
No 8
>PRK11761 cysM cysteine synthase B; Provisional
Probab=100.00 E-value=5.9e-64 Score=456.05 Aligned_cols=288 Identities=45% Similarity=0.697 Sum_probs=256.4
Q ss_pred hhhhhhhhccCCcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHH
Q 020805 8 IAKDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAF 87 (321)
Q Consensus 8 ~~~~i~~~~~~TPL~~~~~l~~~~g~~v~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~AlA~ 87 (321)
++++|...+++|||+++++|+...|++||+|+|++|||||||||++.+++.+++++|.+.+| ++||++|+||||+|+|+
T Consensus 2 ~~~~i~~~~g~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g-~~vv~aSsGN~g~alA~ 80 (296)
T PRK11761 2 AYPTLEDTIGNTPLVKLQRLPPDRGNTILAKLEGNNPAGSVKDRPALSMIVQAEKRGEIKPG-DTLIEATSGNTGIALAM 80 (296)
T ss_pred ccccHHHhcCCCceEeccccccCCCCEEEEEEcccCCCCCchhHHHHHHHHHHHHcCCCCCC-CEEEEeCCChHHHHHHH
Confidence 56789999999999999999887788999999999999999999999999999999988776 56999999999999999
Q ss_pred HHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEcCCCCCCcchhhhhhchHHH
Q 020805 88 MAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPE 167 (321)
Q Consensus 88 aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~E 167 (321)
+|+.+|++|+||||+.+++.|+++++.|||+|+.++...+++++.+.+++++++. +++|++||+|+.++..||.++++|
T Consensus 81 ~a~~~G~~~~i~~p~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~l~~~~-~~~~~~~~~n~~~~~~~~~t~~~E 159 (296)
T PRK11761 81 IAAIKGYRMKLIMPENMSQERRAAMRAYGAELILVPKEQGMEGARDLALQMQAEG-EGKVLDQFANPDNPLAHYETTGPE 159 (296)
T ss_pred HHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHhcc-CCEecCCCCChhhHHHHhhchHHH
Confidence 9999999999999999999999999999999999997546778888888888876 789999999999988899999999
Q ss_pred HHhhhCCCCCEEEEecCCchhHHHHHHHHHhcCCCcEEEEEecCCCCccCCCCCCCcccccccCCCCcccccccccCEEE
Q 020805 168 LWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGIGAGFVPGVLEVNIIDEVV 247 (321)
Q Consensus 168 i~~ql~~~~d~vv~p~G~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~g~~~~~~~~gl~~~~~~~~~~~~~~d~~~ 247 (321)
|++|+++.+|+||+|+|+||+++|++++||+.+|+++||+|||++++.+.+ +.+......+..++...+|+++
T Consensus 160 i~eq~~~~~d~iv~~vG~Gg~~~Gi~~~lk~~~~~~kvigVep~~~~~i~g-------~~~~~~~~~~~~~~~~~vd~~v 232 (296)
T PRK11761 160 IWRQTEGRITHFVSSMGTTGTIMGVSRYLKEQNPAVQIVGLQPEEGSSIPG-------IRRWPEEYLPKIFDASRVDRVL 232 (296)
T ss_pred HHHhcCCCCCEEEecCCcHHHHHHHHHHHHHhCCCCEEEEEecCCCCcCcC-------CCCCCCCcCCcccChhhCCEEE
Confidence 999997679999999999999999999999999999999999999876642 1112122234455577899999
Q ss_pred EeCHHHHHHHHHHHHHhcCCeEecchHHHHHHHHHHHhcCCCCCCEEEEEecCC-CCCCH
Q 020805 248 QVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVCSQFA-CITSD 306 (321)
Q Consensus 248 ~V~d~e~~~a~~~l~~~~Gi~~~pss~~a~aa~~~~~~~~~~~~~~vv~i~tgg-~~~~~ 306 (321)
.|+|+|+++++++|++.+|+++||+||+++++++++.++ .++++||+|+||+ ..+++
T Consensus 233 ~V~d~e~~~a~~~l~~~~gi~ve~ssga~laaa~~~~~~--~~~~~vV~v~~d~g~ky~~ 290 (296)
T PRK11761 233 DVSQQEAENTMRRLAREEGIFCGVSSGGAVAAALRIARE--NPNAVIVAIICDRGDRYLS 290 (296)
T ss_pred EECHHHHHHHHHHHHHHhCceEchhHHHHHHHHHHHHHH--CCCCeEEEEECCCCcccCC
Confidence 999999999999999999999999999999999998765 3678999999994 45544
No 9
>PRK10717 cysteine synthase A; Provisional
Probab=100.00 E-value=2.4e-63 Score=459.77 Aligned_cols=306 Identities=42% Similarity=0.661 Sum_probs=265.9
Q ss_pred chhhhhhhhccCCcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHH
Q 020805 7 NIAKDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLA 86 (321)
Q Consensus 7 ~~~~~i~~~~~~TPL~~~~~l~~~~g~~v~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~AlA 86 (321)
.+++++.+.+++|||+++++|++..|++||+|+|++|||||||+|++.+++.+++++|.+.+| .+|+++|+||||+|+|
T Consensus 2 ~~~~~~~~~~g~TPL~~~~~l~~~~g~~i~~K~E~~nptGS~K~Rga~~~v~~a~~~g~~~~g-~~vv~aSsGN~g~alA 80 (330)
T PRK10717 2 KIFEDVSDTIGNTPLIRLNRASEATGCEILGKAEFLNPGGSVKDRAALNIIWDAEKRGLLKPG-GTIVEGTAGNTGIGLA 80 (330)
T ss_pred chhhhHHHHhCCCceEEccccCCCCCCeEEEEeeccCCCCCchHHHHHHHHHHHHHcCCCCCC-CEEEEeCCcHHHHHHH
Confidence 457889999999999999999988889999999999999999999999999999999987776 5699999999999999
Q ss_pred HHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCC------ChhHHHHHHHHHHHhC-CCeEEcCCCCCCcchhh
Q 020805 87 FMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAK------GMKGAVQKAEEILAKT-PNAYMLQQFENPANPKI 159 (321)
Q Consensus 87 ~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~------~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~~ 159 (321)
++|+++|++|+||||+.+++.|+++++.+||+|+.++... ..+.+.+.++++.++. .+++|++||+||.+++.
T Consensus 81 ~~a~~~G~~~~vv~p~~~~~~k~~~~~~~GA~V~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (330)
T PRK10717 81 LVAAARGYKTVIVMPETQSQEKKDLLRALGAELVLVPAAPYANPNNYVKGAGRLAEELVASEPNGAIWANQFDNPANREA 160 (330)
T ss_pred HHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCcccccccchHHHHHHHHHHHHhhCCCCeEecCCCCChhhHHH
Confidence 9999999999999999999999999999999999998641 1122344455554443 27899999999998778
Q ss_pred hhhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHHhcCCCcEEEEEecCCCCccC---CCC---CCCcccccccCCC
Q 020805 160 HYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLS---GGK---PGPHKIQGIGAGF 233 (321)
Q Consensus 160 g~~~~~~Ei~~ql~~~~d~vv~p~G~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~---~g~---~~~~~~~gl~~~~ 233 (321)
||.+++.||++|++..+|+||+|+|+||+++|++++||+.+|+++||+|||++++.+. .+. ...+.++|++.+.
T Consensus 161 g~~t~a~Ei~~ql~~~~d~iv~~vG~GG~~~Gi~~~~k~~~~~~~vi~Vep~~~~~~~~~~~g~~~~~~~~~~~gl~~~~ 240 (330)
T PRK10717 161 HYETTGPEIWEQTDGKVDGFVCAVGTGGTLAGVSRYLKETNPKVKIVLADPTGSALYSYYKTGELKAEGSSITEGIGQGR 240 (330)
T ss_pred HHHhHHHHHHHhcCCCCCEEEEecCchHHHHHHHHHHHHhCCCCEEEEEcCCCCccccccccCCcCCCCCcccCcCCCCc
Confidence 9999999999999767999999999999999999999999999999999999986443 122 2335678888776
Q ss_pred CcccccccccCEEEEeCHHHHHHHHHHHHHhcCCeEecchHHHHHHHHHHHhcCCCCCCEEEEEecCC------CCCCHH
Q 020805 234 VPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVCSQFA------CITSDS 307 (321)
Q Consensus 234 ~~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~~Gi~~~pss~~a~aa~~~~~~~~~~~~~~vv~i~tgg------~~~~~~ 307 (321)
.++.+....+|+++.|+|+|+++++++|++.+|+++||+||++++++++++++. .++++||+|+||+ .+++|+
T Consensus 241 ~~~~~~~~~~d~~v~V~d~e~~~a~~~l~~~~gi~vepssga~laa~~~l~~~~-~~~~~Vv~v~~g~g~ky~~~~~~d~ 319 (330)
T PRK10717 241 ITANLEGAPIDDAIRIPDEEALSTAYRLLEEEGLCLGGSSGINVAAALRLAREL-GPGHTIVTILCDSGERYQSKLFNPD 319 (330)
T ss_pred CCcccChhhCCEEEEECHHHHHHHHHHHHHhcCCeEeecHHHHHHHHHHHHHhc-CCCCEEEEEECCCchhhcccccCHH
Confidence 666666677899999999999999999999999999999999999999988754 4678999999993 466789
Q ss_pred HHHhhcC
Q 020805 308 WLIAITC 314 (321)
Q Consensus 308 ~~~~~~~ 314 (321)
|+.+...
T Consensus 320 ~~~~~~~ 326 (330)
T PRK10717 320 FLREKGL 326 (330)
T ss_pred HHHhcCC
Confidence 9987653
No 10
>TIGR01139 cysK cysteine synthase A. This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate.
Probab=100.00 E-value=3.4e-63 Score=452.83 Aligned_cols=287 Identities=64% Similarity=1.022 Sum_probs=259.8
Q ss_pred hhhccCCcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHc
Q 020805 13 TELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAK 92 (321)
Q Consensus 13 ~~~~~~TPL~~~~~l~~~~g~~v~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~AlA~aa~~~ 92 (321)
...+++|||+++++ ....|.+||+|+|++|||||||||++.+++..+.++|.+.+| ++|+++|+||||+|+|++|+++
T Consensus 2 ~~~~g~TPl~~~~~-~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g-~~vv~aSsGN~g~alA~~a~~~ 79 (298)
T TIGR01139 2 SELIGNTPLVRLNR-IEGCNANVFVKLEGRNPSGSVKDRIALNMIWDAEKRGLLKPG-KTIVEPTSGNTGIALAMVAAAR 79 (298)
T ss_pred ccccCCCceEEccc-cCCCCceEEEEEcccCCCCcchHHHHHHHHHHHHHcCCCCCC-CEEEEeCCChhHHHHHHHHHHc
Confidence 46789999999998 556678999999999999999999999999999999987776 5699999999999999999999
Q ss_pred CCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCC-eEEcCCCCCCcchhhhhhchHHHHHhh
Q 020805 93 QYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPN-AYMLQQFENPANPKIHYETTGPELWKG 171 (321)
Q Consensus 93 G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~Ei~~q 171 (321)
|++|+||||+++++.|+++++.+||+|+.++++.+.+++.+.+++++++.++ +++++||+||.+++.||.++++||++|
T Consensus 80 Gl~~~i~vp~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei~~q 159 (298)
T TIGR01139 80 GYKLILTMPETMSIERRKLLKAYGAELVLTPGAEGMKGAIAKAEEIAASTPNSYFMLQQFENPANPEIHRKTTGPEIWRD 159 (298)
T ss_pred CCeEEEEeCCccCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCcEEcccccCCcccHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999765456778888888887643 568999999998889999999999999
Q ss_pred hCCCCCEEEEecCCchhHHHHHHHHHhcCCCcEEEEEecCCCCccCCCCCCCcccccccCCCCcccccccccCEEEEeCH
Q 020805 172 SGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGIGAGFVPGVLEVNIIDEVVQVSS 251 (321)
Q Consensus 172 l~~~~d~vv~p~G~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~g~~~~~~~~gl~~~~~~~~~~~~~~d~~~~V~d 251 (321)
+++.||+||+|+|+||+++|++++||+.+|+++||+|||.+++.+...+...+.++|++.+..|..++++.+|+++.|+|
T Consensus 160 ~~~~~d~vv~~vG~Gg~~~Gi~~~~~~~~~~~~vi~Ve~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~d~~~~V~d 239 (298)
T TIGR01139 160 TDGKLDAFVAGVGTGGTITGVGEVLKEQKPNIKIVAVEPAESPVLSGGKPGPHKIQGIGAGFIPKNLNRSVIDEVITVSD 239 (298)
T ss_pred hCCCCCEEEEecchhHhHHHHHHHHHhcCCCCEEEEEecCCCcccCCCCCCCCCCCCCCCCCCCCccChhhCCEEEEECH
Confidence 97679999999999999999999999999999999999999988776666666778888776777777888999999999
Q ss_pred HHHHHHHHHHHHhcCCeEecchHHHHHHHHHHHhcCCCCCCEEEEEecCCC
Q 020805 252 DEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVCSQFAC 302 (321)
Q Consensus 252 ~e~~~a~~~l~~~~Gi~~~pss~~a~aa~~~~~~~~~~~~~~vv~i~tgg~ 302 (321)
+|+++++++|++.+|+++||+||+++++++++.++. .++++||+++||+.
T Consensus 240 ~e~~~a~~~l~~~~gi~~~pssga~laa~~~~~~~~-~~~~~vv~v~~d~G 289 (298)
T TIGR01139 240 EEAIETARRLAAEEGILVGISSGAAVAAALKLAKRP-EPDKLIVVILPSTG 289 (298)
T ss_pred HHHHHHHHHHHHhcCceEcccHHHHHHHHHHHHHhc-CCCCEEEEEECCCC
Confidence 999999999999999999999999999999988764 36789999999954
No 11
>PLN02356 phosphateglycerate kinase
Probab=100.00 E-value=2.1e-62 Score=458.14 Aligned_cols=305 Identities=33% Similarity=0.525 Sum_probs=261.2
Q ss_pred chhhhhhhhccCCcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHH
Q 020805 7 NIAKDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLA 86 (321)
Q Consensus 7 ~~~~~i~~~~~~TPL~~~~~l~~~~g~~v~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~AlA 86 (321)
+....+.+.+|+|||+++++|+...|++||+|+|++|||||||||++.+++.++.++|.+.+++ .|+++||||||+|+|
T Consensus 42 ~~~~~~~~~ig~TPLv~~~~l~~~~g~~v~~KlE~~nPtGS~KdR~A~~~i~~a~~~g~~~~~g-~VveaSSGN~g~alA 120 (423)
T PLN02356 42 KPRNGLIDAIGNTPLIRINSLSEATGCEILGKCEFLNPGGSVKDRVAVKIIEEALESGQLFPGG-VVTEGSAGSTAISLA 120 (423)
T ss_pred chhhhHHhhcCCCceEECcccccccCCEEEEEeccCCCCCCHHHHHHHHHHHHHHhCCccCCCC-EEEEeCCHHHHHHHH
Confidence 3456788899999999999999888899999999999999999999999999999999876763 588899999999999
Q ss_pred HHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCC-----CCh-hHHH---HHHHHHHHh----------------
Q 020805 87 FMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPA-----KGM-KGAV---QKAEEILAK---------------- 141 (321)
Q Consensus 87 ~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~-----~~~-~~~~---~~a~~~~~~---------------- 141 (321)
++|+.+|++|+||||+++++.|+++++.|||+|+.+++. ..+ ..+. +.+.+++++
T Consensus 121 ~~aa~~G~~~~ivvP~~~s~~K~~~ir~~GAeVi~v~~~~~~~~~~~~~~a~~~~~~a~e~a~~~~~~~~~~~~~~~~~~ 200 (423)
T PLN02356 121 TVAPAYGCKCHVVIPDDVAIEKSQILEALGATVERVRPVSITHKDHYVNIARRRALEANELASKRRKGSETDGIHLEKTN 200 (423)
T ss_pred HHHHHcCCcEEEEECCCCcHHHHHHHHHcCCEEEEECCccCCCcchhHHHHHHHHHHHHHHHHHhhhccccccccccccc
Confidence 999999999999999999999999999999999999641 112 1111 223444433
Q ss_pred ----------------CCCeEEcCCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHHhcCCCcEE
Q 020805 142 ----------------TPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKL 205 (321)
Q Consensus 142 ----------------~~~~~~~~~~~~~~~~~~g~~~~~~Ei~~ql~~~~d~vv~p~G~Gg~~aGi~~~~k~~~~~~~v 205 (321)
.++.+|++||+|+.|+..|+..+|+||++|+++++|+||+|+||||+++|+++++|+.+|+++|
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~q~~n~~n~~ahg~gTg~EI~eQl~g~~D~vVv~vGtGGti~Gva~~lK~~~P~vkV 280 (423)
T PLN02356 201 GCISEEEKENSLFSSSCTGGFFADQFENLANFRAHYEGTGPEIWEQTQGNLDAFVAAAGTGGTLAGVSRFLQEKNPNIKC 280 (423)
T ss_pred cccccccccccccccCCCCcEecCccCCcchHHHHHhhHHHHHHHhcCCCCCEEEeCCCchHHHHHHHHHHHHhCCCCEE
Confidence 1467899999999997777666799999999778999999999999999999999999999999
Q ss_pred EEEecCCCCccC-------------CCCC----CCcccccccCCCCcccccccccCEEEEeCHHHHHHHHHHHHHhcCCe
Q 020805 206 YGIEPTESPVLS-------------GGKP----GPHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLF 268 (321)
Q Consensus 206 igv~~~~~~~~~-------------~g~~----~~~~~~gl~~~~~~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~~Gi~ 268 (321)
++|||.+++.+. .|+. .++.++|++.+..|..++...+|+++.|+|+|+++++++|++++|++
T Consensus 281 igVep~~s~~~~~~~~~~~~~~s~~~G~~~~~~~~tia~Gig~~~~~~~~~~~~vD~~v~Vsd~ea~~a~r~L~~~~Gl~ 360 (423)
T PLN02356 281 FLIDPPGSGLFNKVTRGVMYTREEAEGRRLKNPFDTITEGIGINRLTQNFLMAKLDGAFRGTDKEAVEMSRYLLKNDGLF 360 (423)
T ss_pred EEEecCCCccccccccchhhhhhhhcCCccCCCCCeecCcCcCCCCChhHhHHhCCcEEEECHHHHHHHHHHHHHHCCee
Confidence 999999986432 1222 24567899988778888888999999999999999999999999999
Q ss_pred EecchHHHHHHHHHHHhcCCCCCCEEEEEecCC------CCCCHHHHHhhc
Q 020805 269 VGISSGGAAAAAIEIAKRPENAGKLIVVCSQFA------CITSDSWLIAIT 313 (321)
Q Consensus 269 ~~pss~~a~aa~~~~~~~~~~~~~~vv~i~tgg------~~~~~~~~~~~~ 313 (321)
+||+||+++++++++++.. .++++||+|+||. .+++++|+.+..
T Consensus 361 vg~Ssaa~laaa~~la~~~-~~g~~VV~Il~d~G~kyl~~~~~~~w~~~~~ 410 (423)
T PLN02356 361 VGSSSAMNCVGAVRVAQSL-GPGHTIVTILCDSGMRHLSKFHDPQYLSQHG 410 (423)
T ss_pred EeECHHHHHHHHHHHHHHh-CCCCeEEEEECCCCcchhhhhcCHHHHHhcC
Confidence 9999999999999987653 3688999999993 567889998764
No 12
>TIGR01138 cysM cysteine synthase B. Alternate name: O-acetylserine (thiol)-lyase
Probab=100.00 E-value=2.8e-62 Score=444.09 Aligned_cols=280 Identities=43% Similarity=0.736 Sum_probs=250.4
Q ss_pred hhhhccCCcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHH
Q 020805 12 VTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAA 91 (321)
Q Consensus 12 i~~~~~~TPL~~~~~l~~~~g~~v~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~AlA~aa~~ 91 (321)
|.+.+++|||+++++|+...|.+||+|+|++|||||||||++.+++.++.++|.+.+| ++||++|+||||+|+|++|++
T Consensus 2 i~~~ig~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~R~a~~~v~~a~~~g~~~~g-~~vv~aSsGN~g~alA~~a~~ 80 (290)
T TIGR01138 2 IEQTVGNTPLVRLQRMGPENGSEVWLKLEGNNPAGSVKDRPALSMIVEAEKRGEIKPG-DVLIEATSGNTGIALAMIAAL 80 (290)
T ss_pred hHHhCCCCceEEccccccCCCCeEEEEEccCCCCccHHHHHHHHHHHHHHHcCCCCCC-CEEEEECCChHHHHHHHHHHH
Confidence 5678999999999999987788999999999999999999999999999999988776 579999999999999999999
Q ss_pred cCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEcCCCCCCcchhhhhhchHHHHHhh
Q 020805 92 KQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKG 171 (321)
Q Consensus 92 ~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~Ei~~q 171 (321)
+|++|+||||+++++.|+++++.|||+|+.++.+.+++++.+.+++++++. +.+|++||+|+.++..||.++++||++|
T Consensus 81 ~G~~~~i~~p~~~~~~k~~~~~~~GA~v~~v~~~~~~~~~~~~a~~l~~~~-~~~~~~~~~~~~~~~~~~~t~~~Ei~~q 159 (290)
T TIGR01138 81 KGYRMKLLMPDNMSQERKAAMRAYGAELILVTKEEGMEGARDLALELANRG-EGKLLDQFNNPDNPYAHYTSTGPEIWQQ 159 (290)
T ss_pred cCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhC-CCCCCCccCCcccHHHHhHhHHHHHHHH
Confidence 999999999999999999999999999999987545778888999998887 4468899999999777899999999999
Q ss_pred hCCCCCEEEEecCCchhHHHHHHHHHhcCCCcEEEEEecCCCCccCCCCCCCcccccccCCCCcccccccccCEEEEeCH
Q 020805 172 SGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGIGAGFVPGVLEVNIIDEVVQVSS 251 (321)
Q Consensus 172 l~~~~d~vv~p~G~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~g~~~~~~~~gl~~~~~~~~~~~~~~d~~~~V~d 251 (321)
+++++|+||+|+|+||+++|+++++|+.+|++|||+|||.+++.+.+ +.+++....|..+....+|+++.|+|
T Consensus 160 ~~~~~d~iv~~vG~Gg~~~Gv~~~lk~~~~~~kvi~Vep~~~~~~~g-------~~~~~~~~~~~~~~~~~~d~~v~V~d 232 (290)
T TIGR01138 160 TGGRITHFVSSMGTTGTIMGVSRFLKEQNPPVQIVGLQPEEGSSIPG-------IRRWPTEYLPGIFDASLVDRVLDIHQ 232 (290)
T ss_pred cCCCCCEEEECCCchHHHHHHHHHHHHhCCCCEEEEEeCCCCCCccC-------CCCCCCCcCCcccChhhCcEEEEECH
Confidence 97689999999999999999999999999999999999999866532 12233333344455677999999999
Q ss_pred HHHHHHHHHHHHhcCCeEecchHHHHHHHHHHHhcCCCCCCEEEEEecCCC
Q 020805 252 DEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVCSQFAC 302 (321)
Q Consensus 252 ~e~~~a~~~l~~~~Gi~~~pss~~a~aa~~~~~~~~~~~~~~vv~i~tgg~ 302 (321)
+|+++++++|++.+|+++||+||++++++++++++ .++++||+|+||..
T Consensus 233 ~e~~~a~~~l~~~~gi~~g~ssga~laa~~~~~~~--~~~~~vv~v~~d~g 281 (290)
T TIGR01138 233 RDAENTMRELAVREGIFCGVSSGGAVAAALRLARE--LPDAVVVAIICDRG 281 (290)
T ss_pred HHHHHHHHHHHHHhCceEcHhHHHHHHHHHHHHHH--CCCCeEEEEECCCC
Confidence 99999999999999999999999999999998765 36789999999943
No 13
>PRK12483 threonine dehydratase; Reviewed
Probab=100.00 E-value=7.5e-63 Score=474.52 Aligned_cols=294 Identities=25% Similarity=0.299 Sum_probs=261.2
Q ss_pred hhhhhccCCcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHH
Q 020805 11 DVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAA 90 (321)
Q Consensus 11 ~i~~~~~~TPL~~~~~l~~~~g~~v~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~AlA~aa~ 90 (321)
+|.+.+++|||+++++|++.+|++||+|+|++|||||||+|+|.+++..+.+... .++||++|+||||+++|++|+
T Consensus 30 ~i~~~v~~TPL~~~~~Ls~~~g~~IylK~E~lqptGSfK~RGA~n~i~~l~~~~~----~~GVV~aSaGNha~gvA~aA~ 105 (521)
T PRK12483 30 RVYDVARETPLQRAPNLSARLGNQVLLKREDLQPVFSFKIRGAYNKMARLPAEQL----ARGVITASAGNHAQGVALAAA 105 (521)
T ss_pred HHhhhcCCCCeeEchhhhHhhCCEEEEEEcCCCCCCchHHHHHHHHHHHhHHHHh----cCcEEEECCCHHHHHHHHHHH
Confidence 6778999999999999999889999999999999999999999999987764322 145999999999999999999
Q ss_pred HcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEcCCCCCCcchhhhhhchHHHHHh
Q 020805 91 AKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWK 170 (321)
Q Consensus 91 ~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~Ei~~ 170 (321)
.+|++|+||||+.++..|++.++.|||+|+.++. +++++.+.+.+++++. +++|++||+||.+ ++||+|+|.||++
T Consensus 106 ~lGi~~~IvmP~~tp~~Kv~~~r~~GAeVil~g~--~~d~a~~~A~~la~e~-g~~~v~pfdd~~v-iaGqgTig~EI~e 181 (521)
T PRK12483 106 RLGVKAVIVMPRTTPQLKVDGVRAHGGEVVLHGE--SFPDALAHALKLAEEE-GLTFVPPFDDPDV-IAGQGTVAMEILR 181 (521)
T ss_pred HhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECC--CHHHHHHHHHHHHHhc-CCeeeCCCCChHH-HHHHHHHHHHHHH
Confidence 9999999999999999999999999999999985 5789999999999886 7899999999998 7899999999999
Q ss_pred hhCCCCCEEEEecCCchhHHHHHHHHHhcCCCcEEEEEecCCCCccC----CCCCC-----CcccccccCCC---Ccccc
Q 020805 171 GSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLS----GGKPG-----PHKIQGIGAGF---VPGVL 238 (321)
Q Consensus 171 ql~~~~d~vv~p~G~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~----~g~~~-----~~~~~gl~~~~---~~~~~ 238 (321)
|+++.||+||+|+|+||+++|++.++|..+|+++||||||++++.+. .+++. .+.++|++... .++.+
T Consensus 182 Q~~~~~D~VvvpvGgGGliaGia~~~K~~~p~vkVIGVep~~a~~~~~sl~~g~~~~~~~~~t~adGiav~~~g~~~~~~ 261 (521)
T PRK12483 182 QHPGPLDAIFVPVGGGGLIAGIAAYVKYVRPEIKVIGVEPDDSNCLQAALAAGERVVLGQVGLFADGVAVAQIGEHTFEL 261 (521)
T ss_pred HhCCCCCEEEEecCccHHHHHHHHHHHHhCCCCEEEEEEeCCCchhhHHHhcCCcccCCCCCceeceeccCCCCHHHHHH
Confidence 99657999999999999999999999999999999999999998764 23332 23456766433 24456
Q ss_pred cccccCEEEEeCHHHHHHHHHHHHHhcCCeEecchHHHHHHHHHHHhcCCCCCCEEEEEecCCCCCCHHHHHhh
Q 020805 239 EVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVCSQFACITSDSWLIAI 312 (321)
Q Consensus 239 ~~~~~d~~~~V~d~e~~~a~~~l~~~~Gi~~~pss~~a~aa~~~~~~~~~~~~~~vv~i~tgg~~~~~~~~~~~ 312 (321)
.++++|++++|+|+|+.+++++|++++|+++||+||+++++++++.++...++++||+|+||||+|++.+.+-.
T Consensus 262 ~~~~vd~vv~Vse~ei~~ai~~l~~~~~i~vEpagAaalAal~~~~~~~~~~g~~VV~IlsGgNid~~~l~~i~ 335 (521)
T PRK12483 262 CRHYVDEVVTVSTDELCAAIKDIYDDTRSITEPAGALAVAGIKKYAEREGIEGQTLVAIDSGANVNFDRLRHVA 335 (521)
T ss_pred HHHhCCEEEEECHHHHHHHHHHHHHhCCcEEeHHHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCHHHHHHHH
Confidence 67899999999999999999999999999999999999999999876655578999999999999998877643
No 14
>cd01561 CBS_like CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine.
Probab=100.00 E-value=2.1e-61 Score=439.82 Aligned_cols=284 Identities=59% Similarity=0.945 Sum_probs=256.5
Q ss_pred cCCcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeE
Q 020805 17 GNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRL 96 (321)
Q Consensus 17 ~~TPL~~~~~l~~~~g~~v~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~AlA~aa~~~G~~~ 96 (321)
|+|||+++++|++..|.+||+|+|++|||||||+|++.+++.++.++|...+| .+|+++|+||||+|+|++|+++|++|
T Consensus 1 g~TPl~~~~~l~~~~g~~i~~K~E~~~ptgS~K~R~a~~~l~~a~~~g~~~~~-~~vv~~SsGN~g~alA~~a~~~G~~~ 79 (291)
T cd01561 1 GNTPLVRLNRLSPGTGAEIYAKLEFFNPGGSVKDRIALYMIEDAEKRGLLKPG-TTIIEPTSGNTGIGLAMVAAAKGYRF 79 (291)
T ss_pred CCCCEEEccccCCCCCCeEEEEecccCCCCcchHHHHHHHHHHHHHcCCCCCC-CEEEEeCCChHHHHHHHHHHHcCCeE
Confidence 68999999999988889999999999999999999999999999999876655 56999999999999999999999999
Q ss_pred EEEecCCCCHHHHHHHHHcCCEEEEeCCCC--ChhHHHHHHHHHHHhCCCeEEcCCCCCCcchhhhhhchHHHHHhhhCC
Q 020805 97 IITMPASMSLERRIILRAFGAELVLTDPAK--GMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGG 174 (321)
Q Consensus 97 ~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~Ei~~ql~~ 174 (321)
+||||.++++.|+++++.+||+|+.++.+. +.+++.+.+++++++.++++|++||+||.++..|++++++||++|++.
T Consensus 80 ~i~vp~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~g~~~t~~~Ei~~ql~~ 159 (291)
T cd01561 80 IIVMPETMSEEKRKLLRALGAEVILTPEAEADGMKGAIAKARELAAETPNAFWLNQFENPANPEAHYETTAPEIWEQLDG 159 (291)
T ss_pred EEEECCCCCHHHHHHHHHcCCEEEEeCCCCcCCHHHHHHHHHHHHhhCCCcEEecCCCCchHHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999753 347788888888887667999999999998544455999999999976
Q ss_pred CCCEEEEecCCchhHHHHHHHHHhcCCCcEEEEEecCCCCccCCCCCCCcccccccCCCCcccccccccCEEEEeCHHHH
Q 020805 175 RIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEA 254 (321)
Q Consensus 175 ~~d~vv~p~G~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~g~~~~~~~~gl~~~~~~~~~~~~~~d~~~~V~d~e~ 254 (321)
.||+||+|+|+||+++|++.+||+.+|.++||+|||++++.+.......+.++|++.+..++.+.+.++|+++.|+|+|+
T Consensus 160 ~~d~vv~~~G~Gg~~~Gi~~~~~~~~~~~~vi~Ve~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~V~d~e~ 239 (291)
T cd01561 160 KVDAFVAGVGTGGTITGVARYLKEKNPNVRIVGVDPVGSVLFSGGPPGPHKIEGIGAGFIPENLDRSLIDEVVRVSDEEA 239 (291)
T ss_pred CCCEEEEeCChHHHHHHHHHHHHHhCCCCEEEEEecCCCcccCCCCCCCCcCCCCCCCCCCCccCchhCceeEEECHHHH
Confidence 89999999999999999999999999999999999999988754444566778988776677777788999999999999
Q ss_pred HHHHHHHHHhcCCeEecchHHHHHHHHHHHhcCCCCCCEEEEEecCCC
Q 020805 255 IETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVCSQFAC 302 (321)
Q Consensus 255 ~~a~~~l~~~~Gi~~~pss~~a~aa~~~~~~~~~~~~~~vv~i~tgg~ 302 (321)
+++++.|++.+|+++||+||++++++++++++.. ++++||+|+||+.
T Consensus 240 ~~a~~~l~~~~gi~~epssa~a~a~~~~~~~~~~-~~~~vv~v~~~~g 286 (291)
T cd01561 240 FAMARRLAREEGLLVGGSSGAAVAAALKLAKRLG-PGKTIVTILPDSG 286 (291)
T ss_pred HHHHHHHHHHhCeeEcccHHHHHHHHHHHHHhcC-CCCeEEEEECCCc
Confidence 9999999999999999999999999999887653 7889999999954
No 15
>PLN02970 serine racemase
Probab=100.00 E-value=3.3e-62 Score=450.89 Aligned_cols=297 Identities=19% Similarity=0.203 Sum_probs=256.4
Q ss_pred hhhhhhhhccCCcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHH
Q 020805 8 IAKDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAF 87 (321)
Q Consensus 8 ~~~~i~~~~~~TPL~~~~~l~~~~g~~v~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~AlA~ 87 (321)
.++++...+++|||++++++++..|.+||+|+|++|||||||||++.+++.++.+++. .++||++|+||||+|+|+
T Consensus 17 a~~~i~~~i~~TPL~~~~~l~~~~g~~i~~K~E~~nptGSfKdRga~~~i~~~~~~~~----~~~vv~aSsGN~g~alA~ 92 (328)
T PLN02970 17 ARKRIAPFIHRTPVLTSSSLDALAGRSLFFKCECFQKGGAFKFRGACNAIFSLSDDQA----EKGVVTHSSGNHAAALAL 92 (328)
T ss_pred HHHHHhCcCCCCCeeechhhHHhhCCeEEEEecCCCCCCCcHHHHHHHHHHHhhHhhc----CCeEEEECCcHHHHHHHH
Confidence 4567889999999999999998778899999999999999999999999999875543 257999999999999999
Q ss_pred HHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEcCCCCCCcchhhhhhchHHH
Q 020805 88 MAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPE 167 (321)
Q Consensus 88 aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~E 167 (321)
+|+.+|++|+||||+++++.|++.++.|||+|+.++. +++++.+.+++++++. +++|++||+|+.+ +.||+|+++|
T Consensus 93 ~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~Vi~~~~--~~~~~~~~a~~la~~~-g~~~~~~~~n~~~-~~g~~t~g~E 168 (328)
T PLN02970 93 AAKLRGIPAYIVVPKNAPACKVDAVIRYGGIITWCEP--TVESREAVAARVQQET-GAVLIHPYNDGRV-ISGQGTIALE 168 (328)
T ss_pred HHHHcCCCEEEEECCCCCHHHHHHHHhcCCEEEEeCC--CHHHHHHHHHHHHHhc-CCEEeCCCCCcch-hhehHHHHHH
Confidence 9999999999999999999999999999999999996 4678888899988774 8999999999987 6899999999
Q ss_pred HHhhhCCCCCEEEEecCCchhHHHHHHHHHhcCCCcEEEEEecCCCCccC----CCCC-----CCcccccccCCC--Ccc
Q 020805 168 LWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLS----GGKP-----GPHKIQGIGAGF--VPG 236 (321)
Q Consensus 168 i~~ql~~~~d~vv~p~G~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~----~g~~-----~~~~~~gl~~~~--~~~ 236 (321)
|++|++ .||+||+|+|+||+++|++++||+.+|+++||+|||++++.+. .++. ..+..+|++... .++
T Consensus 169 i~~ql~-~~D~vv~~vG~GG~~~Gi~~~lk~~~~~~kvi~Vep~~~~~~~~s~~~g~~~~~~~~~tia~gl~~~~~~~~~ 247 (328)
T PLN02970 169 FLEQVP-ELDVIIVPISGGGLISGIALAAKAIKPSIKIIAAEPKGADDAAQSKAAGEIITLPVTNTIADGLRASLGDLTW 247 (328)
T ss_pred HHHhcc-CCCEEEEeeCchHHHHHHHHHHHhcCCCCEEEEEEECCCcHHHHHHHcCCceeCCCCCCccccccCCcCHHHH
Confidence 999995 6999999999999999999999999999999999999997653 2322 123445655431 123
Q ss_pred cccccccCEEEEeCHHHHHHHHHHHHHhcCCeEecchHHHHHHHHHHHhc-CC-CC-CCEEEEEecCCCCCCHHHHHhhc
Q 020805 237 VLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKR-PE-NA-GKLIVVCSQFACITSDSWLIAIT 313 (321)
Q Consensus 237 ~~~~~~~d~~~~V~d~e~~~a~~~l~~~~Gi~~~pss~~a~aa~~~~~~~-~~-~~-~~~vv~i~tgg~~~~~~~~~~~~ 313 (321)
...++.+|+++.|+|+|+++++++|++++|+++||++|++++++++.... +. .+ +++||+++||||++...+.+-+.
T Consensus 248 ~~~~~~~d~~v~V~d~e~~~a~~~la~~~gi~ve~s~aa~laaa~~~~~~~~~~~~~~~~vv~v~~Ggn~~~~~~~~~~~ 327 (328)
T PLN02970 248 PVVRDLVDDVITVDDKEIIEAMKLCYERLKVVVEPSGAIGLAAALSDSFRSNPAWKGCKNVGIVLSGGNVDLGVLWESFS 327 (328)
T ss_pred HHHHhhCCEEEEECHHHHHHHHHHHHHhcCcEEeHHHHHHHHHHHhCcccccccccCCCeEEEEECCCCCCHHHHHHHhh
Confidence 34567899999999999999999999999999999999999998764332 22 23 47999999999999999987654
No 16
>PLN02550 threonine dehydratase
Probab=100.00 E-value=3.1e-62 Score=472.64 Aligned_cols=294 Identities=21% Similarity=0.266 Sum_probs=260.1
Q ss_pred hhhhhccCCcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHH
Q 020805 11 DVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAA 90 (321)
Q Consensus 11 ~i~~~~~~TPL~~~~~l~~~~g~~v~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~AlA~aa~ 90 (321)
++.+.+++|||+++++|++.+|++||+|+|++|||||||+|++.+++..+.+... . ++||++|+||||+++|++|+
T Consensus 102 ~v~~~i~~TPL~~s~~LS~~~g~~IylK~E~lqptGSFK~RGA~n~I~~L~~e~~-~---~GVV~aSaGNhAqgvA~aA~ 177 (591)
T PLN02550 102 KVYDVAIESPLQLAKKLSERLGVKVLLKREDLQPVFSFKLRGAYNMMAKLPKEQL-D---KGVICSSAGNHAQGVALSAQ 177 (591)
T ss_pred hhhccccCChhhhhHHhhHhhCCEEEEEEcCCCCCCcHHHHHHHHHHHHHHHhcC-C---CCEEEECCCHHHHHHHHHHH
Confidence 4568899999999999999889999999999999999999999999998754322 2 45999999999999999999
Q ss_pred HcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEcCCCCCCcchhhhhhchHHHHHh
Q 020805 91 AKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWK 170 (321)
Q Consensus 91 ~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~Ei~~ 170 (321)
++|++|+||||+.++..|++.++.|||+|+.++. +++++.+.+++++++. +++|++||+||.+ ++||+|+|.||++
T Consensus 178 ~lGika~IvmP~~tp~~Kv~~~r~~GAeVvl~g~--~~dea~~~A~~la~e~-g~~fi~pfddp~v-iaGqgTig~EI~e 253 (591)
T PLN02550 178 RLGCDAVIAMPVTTPEIKWQSVERLGATVVLVGD--SYDEAQAYAKQRALEE-GRTFIPPFDHPDV-IAGQGTVGMEIVR 253 (591)
T ss_pred HcCCCEEEEECCCCCHHHHHHHHHcCCEEEEeCC--CHHHHHHHHHHHHHhc-CCEEECCCCChHH-HHHHHHHHHHHHH
Confidence 9999999999999999999999999999999985 5789999999998886 7899999999998 7899999999999
Q ss_pred hhCCCCCEEEEecCCchhHHHHHHHHHhcCCCcEEEEEecCCCCccC----CCCCC-----CcccccccCCC---Ccccc
Q 020805 171 GSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLS----GGKPG-----PHKIQGIGAGF---VPGVL 238 (321)
Q Consensus 171 ql~~~~d~vv~p~G~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~----~g~~~-----~~~~~gl~~~~---~~~~~ 238 (321)
|+++.+|+||+|+|+||+++|++.++|..+|++|||||||++++.+. .|++. .+..+|+.... .++.+
T Consensus 254 Ql~~~~D~VvvpVGgGGLiaGia~~lK~l~p~vkVIGVEp~~a~~~~~s~~~G~~v~~~~~~tiAdGiav~~~G~~t~~i 333 (591)
T PLN02550 254 QHQGPLHAIFVPVGGGGLIAGIAAYVKRVRPEVKIIGVEPSDANAMALSLHHGERVMLDQVGGFADGVAVKEVGEETFRL 333 (591)
T ss_pred HcCCCCCEEEEEeChhHHHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHhcCCccccCCCCCccceeecCCCCHHHHHH
Confidence 99656999999999999999999999999999999999999998763 34432 23456666433 23445
Q ss_pred cccccCEEEEeCHHHHHHHHHHHHHhcCCeEecchHHHHHHHHHHHhcCCCCCCEEEEEecCCCCCCHHHHHhh
Q 020805 239 EVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVCSQFACITSDSWLIAI 312 (321)
Q Consensus 239 ~~~~~d~~~~V~d~e~~~a~~~l~~~~Gi~~~pss~~a~aa~~~~~~~~~~~~~~vv~i~tgg~~~~~~~~~~~ 312 (321)
+++++|+++.|+|+|+.++++.+++.+|+++||+||+++||++++.++...++++||+|+||||+|++.+..-.
T Consensus 334 ~~~~vD~vV~Vsd~eI~~Ai~~l~e~~givvEpAGA~alAall~~~~~~~~~g~~Vv~vlsGgNid~~~l~~v~ 407 (591)
T PLN02550 334 CRELVDGVVLVSRDAICASIKDMFEEKRSILEPAGALALAGAEAYCKYYGLKDENVVAITSGANMNFDRLRIVT 407 (591)
T ss_pred HHhhCCEEEEECHHHHHHHHHHHHHHCCCEEeHHHHHHHHHHHHHHHhcCCCCCeEEEEecCCCCCHHHHHHHH
Confidence 67899999999999999999999999999999999999999999876555688999999999999998876643
No 17
>PRK08526 threonine dehydratase; Provisional
Probab=100.00 E-value=2.2e-62 Score=461.55 Aligned_cols=295 Identities=23% Similarity=0.275 Sum_probs=258.1
Q ss_pred chhhhhhhhccCCcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHH
Q 020805 7 NIAKDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLA 86 (321)
Q Consensus 7 ~~~~~i~~~~~~TPL~~~~~l~~~~g~~v~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~AlA 86 (321)
..++++.+.+++|||+++++|++.+|++||+|+|++|||||||+|++.+.+..+.+.+. .++||++|+||||+++|
T Consensus 9 ~a~~~i~~~i~~TPl~~~~~Ls~~~g~~iylK~E~lqptGSfK~RgA~n~i~~l~~~~~----~~gVV~aSaGNhg~avA 84 (403)
T PRK08526 9 QAKQRISGFVNKTPFAYAPFLSKISGAEVYLKKENLQITGAYKIRGAYNKIANLSEEQK----QHGVIAASAGNHAQGVA 84 (403)
T ss_pred HHHHHHhCcCCCCCccchHHHHHHhCCeEEEEecCCCCCCCCHHHHHHHHHHhccHhhc----CCEEEEECccHHHHHHH
Confidence 35678999999999999999998888999999999999999999999999998876543 25699999999999999
Q ss_pred HHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEcCCCCCCcchhhhhhchHH
Q 020805 87 FMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGP 166 (321)
Q Consensus 87 ~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 166 (321)
++|+++|++|+||||+.++..|++.++.|||+|+.++. +++++.+.+++++++. +++|++||+|+.+ ++||+|++.
T Consensus 85 ~aa~~~Gi~~~IvmP~~~p~~k~~~~r~~GA~Vv~~g~--~~~~a~~~a~~~a~~~-g~~~v~p~~~~~~-i~G~gtia~ 160 (403)
T PRK08526 85 ISAKKFGIKAVIVMPEATPLLKVSGTKALGAEVILKGD--NYDEAYAFALEYAKEN-NLTFIHPFEDEEV-MAGQGTIAL 160 (403)
T ss_pred HHHHHcCCCEEEEEcCCCCHHHHHHHHhCCCEEEEECC--CHHHHHHHHHHHHHhc-CCEeeCCCCCHHH-HhhhHHHHH
Confidence 99999999999999999999999999999999999985 5789999999998886 7899999999987 899999999
Q ss_pred HHHhhhCCCCCEEEEecCCchhHHHHHHHHHhcCCCcEEEEEecCCCCccC----CCCC-----CCcccccccCCC---C
Q 020805 167 ELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLS----GGKP-----GPHKIQGIGAGF---V 234 (321)
Q Consensus 167 Ei~~ql~~~~d~vv~p~G~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~----~g~~-----~~~~~~gl~~~~---~ 234 (321)
||++|+ +.+|+||+|+|+||+++|++.++|..+|+++||||||++++.+. .+++ ..+.++|++... .
T Consensus 161 EI~eq~-~~~D~vvvpvGgGGl~aGia~~~k~~~p~~kvigVep~~~~~~~~s~~~g~~~~~~~~~tiadgiav~~~~~~ 239 (403)
T PRK08526 161 EMLDEI-SDLDMVVVPVGGGGLISGIASAAKQINPNIKIIGVGAKGAPAMYESFHAKKIINSKSVRTIADGIAVRDASPI 239 (403)
T ss_pred HHHHhc-CCCCEEEEecChHHHHHHHHHHHHHhCCCCEEEEEEECCCChHHHHHHcCCcccCCCCCceeccccCCCCCHH
Confidence 999999 47999999999999999999999999999999999999998763 3332 234456776432 1
Q ss_pred cccccccccCEEEEeCHHHHHHHHHHHHHhcCCeEecchHHHHHHHHHHHhcCCCCCCEEEEEecCCCCCCHHHHHh
Q 020805 235 PGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVCSQFACITSDSWLIA 311 (321)
Q Consensus 235 ~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~~Gi~~~pss~~a~aa~~~~~~~~~~~~~~vv~i~tgg~~~~~~~~~~ 311 (321)
++.+.++.+|++++|+|+|+.++++.|++++|+++||++|++++++++.... ..++++||+|+||||+|.+.+.+-
T Consensus 240 ~~~~~~~~vd~~v~V~d~ei~~A~~~l~~~~gi~ve~aga~~lAall~~~~~-~~~~~~Vv~ilsGGnid~~~~~~i 315 (403)
T PRK08526 240 NLAIILECVDDFVQVDDEEIANAILFLLEKQKIVVEGAGAASVAALLHQKID-LKKGKKIGVVLSGGNIDVQMLNII 315 (403)
T ss_pred HHHHHHHhCCEEEEECHHHHHHHHHHHHHhcCcEeeHHHHHHHHHHHhCccc-cccCCeEEEEECCCCCCHHHHHHH
Confidence 2334457899999999999999999999999999999999999998753221 136889999999999999887663
No 18
>KOG1252 consensus Cystathionine beta-synthase and related enzymes [Amino acid transport and metabolism]
Probab=100.00 E-value=7e-63 Score=435.09 Aligned_cols=310 Identities=66% Similarity=1.030 Sum_probs=287.7
Q ss_pred cchhhhhhhhccCCcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHH
Q 020805 6 SNIAKDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGL 85 (321)
Q Consensus 6 ~~~~~~i~~~~~~TPL~~~~~l~~~~g~~v~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~Al 85 (321)
..+...+.+.+|+|||+.++++..++.++||+|+|.+||+||.|||.++.|+.+|+..|.+.||..+|+++||||+|.++
T Consensus 40 ~~~~~~~~~liG~TPlv~ln~i~~g~~~~i~~K~E~~~p~~SvKdRia~sMi~~Ae~~G~i~pg~stliEpTSGNtGigL 119 (362)
T KOG1252|consen 40 ILILWDVRDLIGNTPLVKLNKIAGGCVARIAAKLEYMNPGGSVKDRIAWSMIEDAEKKGLITPGKSTLIEPTSGNTGIGL 119 (362)
T ss_pred hhhhhhHHHHhCCCceEEeccccCCccceEEEEeeecCCcccHHHHHHHHHHHHHHHcCCccCCceEEEecCCCchHHHH
Confidence 34566789999999999999998888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhH---HHHHHHHHHHhCCCeEEcCCCCCCcchhhhhh
Q 020805 86 AFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKG---AVQKAEEILAKTPNAYMLQQFENPANPKIHYE 162 (321)
Q Consensus 86 A~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~ 162 (321)
|++|+..|++|+++||+..+.+|+..|++||++|++++....++. +...+.++..+.++.|.++||.||.|+..||.
T Consensus 120 A~~~a~~Gyk~i~tmP~~ms~Ek~~~l~a~Gaeii~tp~a~~~~~~e~ai~~a~~l~~~~pna~~l~Qf~np~Np~~hy~ 199 (362)
T KOG1252|consen 120 AYMAALRGYKCIITMPEKMSKEKRILLRALGAEIILTPPAAGMKGPESAIGKAEELLNKTPNAYILDQFHNPGNPLAHYE 199 (362)
T ss_pred HHHHHHcCceEEEEechhhhHHHHHHHHHcCCEEEecChHHccCChHHHHHHHHHHHHhCCChHHHHHhcCCCCcccccc
Confidence 999999999999999999999999999999999999997655555 88999999999999999999999999999999
Q ss_pred chHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHHhcCCCcEEEEEecCCCCccCCCCCCC--cccccccCCCCcccccc
Q 020805 163 TTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGP--HKIQGIGAGFVPGVLEV 240 (321)
Q Consensus 163 ~~~~Ei~~ql~~~~d~vv~p~G~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~g~~~~--~~~~gl~~~~~~~~~~~ 240 (321)
++++|||+|+.+++|.+|.++|||||++|+++++|+.+|+++|++|+|..|..+..+.+.+ +.++|+|.++.|..++.
T Consensus 200 ttg~EI~~q~~g~vDi~V~gaGTGGTitgvGRylke~~~~~kVv~vdp~~S~~~~~~~~g~~~~~I~GIGyg~~p~~ld~ 279 (362)
T KOG1252|consen 200 TTGPEIWRQLDGKVDIFVAGAGTGGTITGVGRYLKEQNPNIKVVGVDPQESIVLSGGKPGPTFHKIQGIGYGFIPTTLDT 279 (362)
T ss_pred cccHHHHHHhcCCCCEEEeccCCCceeechhHHHHHhCCCCEEEEeCCCcceeccCCCCCCCccceeccccCcCccccch
Confidence 9999999999999999999999999999999999999999999999999998888777777 89999999999999999
Q ss_pred cccCEEEEeCHHHHHHHHHHHHHhcCCeEecchHHHHHHHHHHHhcCCCCCCEEEEEecC-C-----CCCCHHHHHhhcC
Q 020805 241 NIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVCSQF-A-----CITSDSWLIAITC 314 (321)
Q Consensus 241 ~~~d~~~~V~d~e~~~a~~~l~~~~Gi~~~pss~~a~aa~~~~~~~~~~~~~~vv~i~tg-g-----~~~~~~~~~~~~~ 314 (321)
..+|+.+.+.++|++.+.++|+.+||+.++.|||++++++++++++.+..++-+|+++++ | ...+++|+++...
T Consensus 280 ~~vd~~~~~~~d~A~~~Ar~La~eeGll~G~SSGan~~aAl~~a~~~en~~kliV~~~pd~ge~Y~st~L~d~w~~e~~~ 359 (362)
T KOG1252|consen 280 KLVDEVLKVSSDEAIEMARRLALEEGLLVGISSGANVAAALKLAKRPENAGKLIVVTFPDFGERYLSTFLFDEWREEAEK 359 (362)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhhCeeecccchHHHHHHHHHHhccccCCcEEEEECCCcchhhhhhhhHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999887666766666344 3 4566888877654
Q ss_pred C
Q 020805 315 M 315 (321)
Q Consensus 315 ~ 315 (321)
+
T Consensus 360 ~ 360 (362)
T KOG1252|consen 360 L 360 (362)
T ss_pred h
Confidence 4
No 19
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=100.00 E-value=1e-61 Score=467.15 Aligned_cols=295 Identities=24% Similarity=0.283 Sum_probs=261.8
Q ss_pred hhhhhhccCCcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHH
Q 020805 10 KDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMA 89 (321)
Q Consensus 10 ~~i~~~~~~TPL~~~~~l~~~~g~~v~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~AlA~aa 89 (321)
.++.+.+++|||+++++|++.+|++||+|+|++|||||||+|+|.+++..+.+... .++||++|+||||+++|++|
T Consensus 9 ~~v~~~i~~TPL~~~~~Ls~~~g~~i~lK~E~lqptgSfK~RgA~n~i~~l~~~~~----~~gVV~aSaGNha~~vA~aa 84 (499)
T TIGR01124 9 ARVYEAAQETPLQKAAKLSERLGNRILIKREDLQPVFSFKLRGAYNKMAQLSPEQK----ARGVIAASAGNHAQGVAFSA 84 (499)
T ss_pred hHhhCccCCCCeeehHHHHHHhCCEEEEEecCCCCCCCCHHHHHHHHHHHhhHHhc----CCEEEEECCCHHHHHHHHHH
Confidence 47889999999999999998888999999999999999999999999988643322 25699999999999999999
Q ss_pred HHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEcCCCCCCcchhhhhhchHHHHH
Q 020805 90 AAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELW 169 (321)
Q Consensus 90 ~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~Ei~ 169 (321)
+++|++|+||||+.+|..|++.++.+||+|+.++. +++++.+.+++++++. +++|++||+||.+ ++|++|+|.||+
T Consensus 85 ~~~Gi~~~IvmP~~tp~~Kv~~~r~~GA~Vvl~g~--~~d~a~~~a~~la~~~-g~~~i~p~~~~~~-i~G~gtig~EI~ 160 (499)
T TIGR01124 85 ARLGLKALIVMPETTPDIKVDAVRGFGGEVVLHGA--NFDDAKAKAIELSQEK-GLTFIHPFDDPLV-IAGQGTLALEIL 160 (499)
T ss_pred HHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEeCc--CHHHHHHHHHHHHHhc-CCEeeCCCCChHH-HHhhHHHHHHHH
Confidence 99999999999999999999999999999999985 5789999999998886 7899999999988 799999999999
Q ss_pred hhhCCCCCEEEEecCCchhHHHHHHHHHhcCCCcEEEEEecCCCCccC----CCCCC-----CcccccccCCC---Cccc
Q 020805 170 KGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLS----GGKPG-----PHKIQGIGAGF---VPGV 237 (321)
Q Consensus 170 ~ql~~~~d~vv~p~G~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~----~g~~~-----~~~~~gl~~~~---~~~~ 237 (321)
+|++.++|+||+|+|+||+++|++.++|..+|+++||||||++++++. .|++. .+.++|++... .++.
T Consensus 161 ~q~~~~~D~vvvpvGgGGliaGia~~lk~~~p~~kVIgVep~~~~~~~~s~~~g~~~~~~~~~t~adgiav~~~g~~~~~ 240 (499)
T TIGR01124 161 RQVANPLDAVFVPVGGGGLAAGVAALIKQLMPEIKVIGVEPTDSDCMKQALDAGEPVDLDQVGLFADGVAVKRVGDETFR 240 (499)
T ss_pred HhCCCCCCEEEEccCccHHHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHhcCCceeCCCCCCccCcccCCCccHHHHH
Confidence 999667999999999999999999999999999999999999998663 34331 23456765443 2455
Q ss_pred ccccccCEEEEeCHHHHHHHHHHHHHhcCCeEecchHHHHHHHHHHHhcCCCCCCEEEEEecCCCCCCHHHHHhh
Q 020805 238 LEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVCSQFACITSDSWLIAI 312 (321)
Q Consensus 238 ~~~~~~d~~~~V~d~e~~~a~~~l~~~~Gi~~~pss~~a~aa~~~~~~~~~~~~~~vv~i~tgg~~~~~~~~~~~ 312 (321)
++++++|++++|+|+|+.++++.+++.+|+++||+||+++++++++.++...++++||+|+||||++++.+....
T Consensus 241 ~~~~~vd~vv~V~d~ei~~ai~~l~~~~gii~EpagA~~lAal~~~~~~~~~~~~~vv~i~sG~n~~~~~l~~~~ 315 (499)
T TIGR01124 241 LCQQYLDDIVTVDTDEVCAAIKDLFEDTRAVAEPAGALALAGLKKYVALHGIRGQTLVAILSGANMNFHRLRYVS 315 (499)
T ss_pred HHHHhCCEEEEECHHHHHHHHHHHHHhcCcEEechHHHHHHHHHHhhhhcCCCCCeEEEEECCCCCCHHHHHHHH
Confidence 677899999999999999999999999999999999999999999887655578999999999999999876643
No 20
>PRK06382 threonine dehydratase; Provisional
Probab=100.00 E-value=1.9e-61 Score=457.67 Aligned_cols=294 Identities=23% Similarity=0.282 Sum_probs=257.5
Q ss_pred hhhhhhhhccCCcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHH
Q 020805 8 IAKDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAF 87 (321)
Q Consensus 8 ~~~~i~~~~~~TPL~~~~~l~~~~g~~v~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~AlA~ 87 (321)
.+.+|...+++|||+++++|++..|++||+|+|++|||||||+|++.+++..+.+.+. .++||++|+||||+|+|+
T Consensus 15 a~~~~~~~i~~TPl~~~~~ls~~~g~~v~~K~E~~nptGSfK~Rga~~~i~~~~~~~~----~~gvv~aSsGN~g~a~A~ 90 (406)
T PRK06382 15 AKSYLEGYLNRTPLIHSTTFGDEYGGDIYFKLENFQKTGSFKSRGAVFKFSKLSEDEL----RNGVITASAGNHAQGVAY 90 (406)
T ss_pred HHHHHhCcCCCCCeeEhhhhHHHhCCEEEEEecCCCCCCCCHHHHHHHHHHhcchhcc----CCeEEEECCCHHHHHHHH
Confidence 5678999999999999999998888999999999999999999999999988776543 245999999999999999
Q ss_pred HHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEcCCCCCCcchhhhhhchHHH
Q 020805 88 MAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPE 167 (321)
Q Consensus 88 aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~E 167 (321)
+|+++|++|+||||+.++..|++.++.|||+|+.+++ +++++.+.+++++++. +++|++||+|+.+ ++||+|+++|
T Consensus 91 aa~~~G~~~~ivmp~~~~~~k~~~~~~~GA~Vv~~~~--~~~~a~~~a~~la~~~-~~~~v~~~~~~~~-i~g~~t~~~E 166 (406)
T PRK06382 91 AASINGIDAKIVMPEYTIPQKVNAVEAYGAHVILTGR--DYDEAHRYADKIAMDE-NRTFIEAFNDRWV-ISGQGTIGLE 166 (406)
T ss_pred HHHHcCCCEEEEEcCCCHHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhc-CCEecCccCChHH-HHHHHHHHHH
Confidence 9999999999999999999999999999999999986 4788999999998886 7899999999987 7899999999
Q ss_pred HHhhhCCCCCEEEEecCCchhHHHHHHHHHhcCCCcEEEEEecCCCCcc----CCCCC-----CCcccccccCCC---Cc
Q 020805 168 LWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVL----SGGKP-----GPHKIQGIGAGF---VP 235 (321)
Q Consensus 168 i~~ql~~~~d~vv~p~G~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~----~~g~~-----~~~~~~gl~~~~---~~ 235 (321)
|++|+ +.||+||+|+|+||+++|+++++|..+|+++||||||++++++ ..+++ ..+.++|++.+. .+
T Consensus 167 i~eq~-~~~d~vvvpvG~GG~~~Gv~~~~k~~~p~~~vigVe~~~~~~~~~~~~~~~~~~~~~~~t~a~gl~~~~~~~~~ 245 (406)
T PRK06382 167 IMEDL-PDLDQIIVPVGGGGLISGIALAAKHINPNVKIIGIESELSDSMKASLREGKIVAHTSGVSICDGISVKYPGDLT 245 (406)
T ss_pred HHHhc-CCCCEEEEeeChHHHHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHHcCCceecCCCCCccccccCCCccHHH
Confidence 99999 4799999999999999999999999999999999999999875 23333 234567776653 23
Q ss_pred ccccccccCEEEEeCHHHHHHHHHHHHHhcCCeEecchHHHHHHHHHHHhcCCCCCCEEEEEecCCCCCCHHHHHhh
Q 020805 236 GVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVCSQFACITSDSWLIAI 312 (321)
Q Consensus 236 ~~~~~~~~d~~~~V~d~e~~~a~~~l~~~~Gi~~~pss~~a~aa~~~~~~~~~~~~~~vv~i~tgg~~~~~~~~~~~ 312 (321)
+.+.++++|+++.|+|+|++++++.|++++|+++||++|++++++... + ...++++||+|+||||+|...+.+.+
T Consensus 246 ~~~~~~~~d~~v~V~d~ei~~a~~~l~~~~gi~~epsga~~laal~~~-~-~~~~~~~Vv~i~sGGn~d~~~~~~~~ 320 (406)
T PRK06382 246 FDIAKNYVDDIVTVTEESVSKAIYKLFEREKIVAEPSGAVGLAAIMEG-K-VDVKGKKVAIVVSGGNINPLLMSKII 320 (406)
T ss_pred HHHHHHcCCEEEEECHHHHHHHHHHHHHHcCceechHHHHHHHHHHhc-c-ccCCCCEEEEEeCCCCCCHHHHHHHH
Confidence 345678899999999999999999999999999999999999877542 2 12467899999999999987766543
No 21
>PRK08638 threonine dehydratase; Validated
Probab=100.00 E-value=3.3e-61 Score=444.01 Aligned_cols=296 Identities=23% Similarity=0.287 Sum_probs=254.7
Q ss_pred hhhhhhhhccCCcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHH
Q 020805 8 IAKDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAF 87 (321)
Q Consensus 8 ~~~~i~~~~~~TPL~~~~~l~~~~g~~v~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~AlA~ 87 (321)
.+++|.+.+++|||+++++|++..|++||+|+|++|||||||||++.+++.++.+... .++|+++|+||||+|+|+
T Consensus 17 a~~~i~~~i~~TPlv~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~i~~~~~~~~----~~~vv~~SsGN~g~alA~ 92 (333)
T PRK08638 17 AKQRLAGRIRKTPLPRSNYLSERCKGEIFLKLENMQRTGSFKIRGAFNKLSSLTDAEK----RKGVVACSAGNHAQGVAL 92 (333)
T ss_pred HHHHhhCcCcCCCceechhhHHhhCCeEEEEeccCCccCCcHHHHHHHHHHhccHHhc----CCeEEEeCCcHHHHHHHH
Confidence 5678999999999999999998888899999999999999999999999998765322 156999999999999999
Q ss_pred HHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEcCCCCCCcchhhhhhchHHH
Q 020805 88 MAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPE 167 (321)
Q Consensus 88 aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~E 167 (321)
+|+.+|++|+||||+++++.|+++++.|||+|+.+++ +++++.+.+++++++. +++|++||+||.+ .+||.++++|
T Consensus 93 ~aa~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~--~~~~~~~~a~~~a~~~-g~~~~~~~~~~~~-~~g~~t~a~E 168 (333)
T PRK08638 93 SCALLGIDGKVVMPKGAPKSKVAATCGYGAEVVLHGD--NFNDTIAKVEEIVEEE-GRTFIPPYDDPKV-IAGQGTIGLE 168 (333)
T ss_pred HHHHcCCCEEEEeCCCCcHHHHHHHHHcCCEEEEECc--CHHHHHHHHHHHHHhc-CCEEcCcCCCcch-hccccHHHHH
Confidence 9999999999999999999999999999999999985 5688888999998886 7899999999988 6899999999
Q ss_pred HHhhhCCCCCEEEEecCCchhHHHHHHHHHhcCCCcEEEEEecCCCCccC----CCCCCCc-----ccccccCCCCcccc
Q 020805 168 LWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLS----GGKPGPH-----KIQGIGAGFVPGVL 238 (321)
Q Consensus 168 i~~ql~~~~d~vv~p~G~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~----~g~~~~~-----~~~gl~~~~~~~~~ 238 (321)
|++|+ +++|+||+|+|+||+++|++.+||+.+|+++||+|||++++.+. .+++... ..+|+... .|..+
T Consensus 169 i~~q~-~~~d~vv~~vG~Gg~~~Gv~~~lk~~~~~~~vigVep~g~~~~~~s~~~g~~~~~~~~~ti~~gl~~~-~p~~~ 246 (333)
T PRK08638 169 ILEDL-WDVDTVIVPIGGGGLIAGIAVALKSINPTIHIIGVQSENVHGMAASFYAGEITTHRTTGTLADGCDVS-RPGNL 246 (333)
T ss_pred HHhhc-CCCCEEEEEeChhHHHHHHHHHHHHhCCCCEEEEEEECCCchHHHHHHCCCcccCCCCCCeeccccCC-CccHH
Confidence 99999 57999999999999999999999999999999999999987543 3443322 23444332 23333
Q ss_pred c----ccccCEEEEeCHHHHHHHHHHHHHhcCCeEecchHHHHHHHHHHHhcCCCCCCEEEEEecCCCCCCHHHHHhhc
Q 020805 239 E----VNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVCSQFACITSDSWLIAIT 313 (321)
Q Consensus 239 ~----~~~~d~~~~V~d~e~~~a~~~l~~~~Gi~~~pss~~a~aa~~~~~~~~~~~~~~vv~i~tgg~~~~~~~~~~~~ 313 (321)
. ++.+|+++.|+|+|+++++++|++++|+++||++|++++++.........++++||+|+||||++++.+.+...
T Consensus 247 ~~~~~~~~~d~~v~Vsd~ea~~a~~~l~~~~gi~~e~sgA~~~Aa~~~~~~~~~~~~~~vv~v~~Ggn~~~~~~~~~~~ 325 (333)
T PRK08638 247 TYEIVRELVDDIVLVSEDEIRNAMKDLIQRNKVVTEGAGALATAALLSGKLDQYIQNKKVVAIISGGNVDLSRVSQITG 325 (333)
T ss_pred HHHHHHHhCCeEEEECHHHHHHHHHHHHHHcCCeechhHHHHHHHHHhCCcccccCCCcEEEEECCCCCCHHHHHHHHH
Confidence 3 47899999999999999999999999999999988888887653222224688999999999999999888654
No 22
>PRK07048 serine/threonine dehydratase; Validated
Probab=100.00 E-value=3.2e-61 Score=443.93 Aligned_cols=295 Identities=19% Similarity=0.240 Sum_probs=255.1
Q ss_pred chhhhhhhhccCCcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHH
Q 020805 7 NIAKDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLA 86 (321)
Q Consensus 7 ~~~~~i~~~~~~TPL~~~~~l~~~~g~~v~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~AlA 86 (321)
..+++|...+++|||++++++++..|.+||+|+|++|||||||||++.+++.++.+.+. .++||++|+||||+|+|
T Consensus 13 ~a~~~i~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~R~a~~~i~~~~~~~~----~~~vv~aSsGN~g~alA 88 (321)
T PRK07048 13 AAAARLAGVAHRTPVLTSRTADARTGAQVFFKCENFQRMGAFKFRGAYNALSQFSPEQR----RAGVVTFSSGNHAQAIA 88 (321)
T ss_pred HHHHHhhCCCCCCCCccchhhHHhcCCeEEEEeccCCCCCCeeHHHHHHHHHhhhHhhc----CCcEEEeCCCHHHHHHH
Confidence 35678999999999999999988778899999999999999999999999998775432 25699999999999999
Q ss_pred HHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEcCCCCCCcchhhhhhchHH
Q 020805 87 FMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGP 166 (321)
Q Consensus 87 ~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 166 (321)
++|+.+|++|+||||+++++.|+++++.|||+|+.++. .++++.+.+++++++. +++|++||+|+.+ ++|++++++
T Consensus 89 ~~a~~~G~~~~vvvp~~~~~~k~~~~~~~GAeV~~~~~--~~~~~~~~a~~l~~~~-g~~~~~~~~~~~~-~~g~~t~~~ 164 (321)
T PRK07048 89 LSARLLGIPATIVMPQDAPAAKVAATRGYGGEVVTYDR--YTEDREEIGRRLAEER-GLTLIPPYDHPHV-IAGQGTAAK 164 (321)
T ss_pred HHHHHcCCCEEEEECCCCCHHHHHHHHHCCCEEEEECC--CHHHHHHHHHHHHHhc-CCEEECCCCCcch-hhccchHHH
Confidence 99999999999999999999999999999999999996 3567888888888886 7899999999987 789999999
Q ss_pred HHHhhhCCCCCEEEEecCCchhHHHHHHHHHhcCCCcEEEEEecCCCCcc----CCCCCC-----CcccccccCCC---C
Q 020805 167 ELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVL----SGGKPG-----PHKIQGIGAGF---V 234 (321)
Q Consensus 167 Ei~~ql~~~~d~vv~p~G~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~----~~g~~~-----~~~~~gl~~~~---~ 234 (321)
||++|++ +||+||+|+|+||+++|+++++|+.+|+++||+|||++++++ ..++.. .+..+|+.... .
T Consensus 165 EI~~q~~-~~D~vv~~vGtGG~~~Gi~~~~k~~~~~~~vigvep~~~~~~~~s~~~g~~~~~~~~~tia~g~~~~~~~~~ 243 (321)
T PRK07048 165 ELFEEVG-PLDALFVCLGGGGLLSGCALAARALSPGCKVYGVEPEAGNDGQQSFRSGEIVHIDTPRTIADGAQTQHLGNY 243 (321)
T ss_pred HHHhhcC-CCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEEeeCCChhHHHHHHcCCcccCCCCCCcccccccCCccHH
Confidence 9999994 799999999999999999999999999999999999998753 233321 12234443211 1
Q ss_pred cccccccccCEEEEeCHHHHHHHHHHHHHhcCCeEecchHHHHHHHHHHHhcCCCCCCEEEEEecCCCCCCHHHHHhh
Q 020805 235 PGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVCSQFACITSDSWLIAI 312 (321)
Q Consensus 235 ~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~~Gi~~~pss~~a~aa~~~~~~~~~~~~~~vv~i~tgg~~~~~~~~~~~ 312 (321)
.+.+..+++|+++.|+|+|+++++++|++++|+++||++|+++++++++.+. .++++||+|+||||++.+.+.+..
T Consensus 244 ~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~~gi~~eps~a~~laa~~~~~~~--~~~~~vv~i~tGGn~~~~~~~~~~ 319 (321)
T PRK07048 244 TFPIIRRLVDDIVTVSDAELVDAMRFFAERMKIVVEPTGCLGAAAALRGKVP--LKGKRVGVIISGGNVDLARFAALL 319 (321)
T ss_pred HHHHHHHhCCceEEECHHHHHHHHHHHHHhCCceeccHHHHHHHHHHhCchh--cCCCeEEEEeCCCCCCHHHHHHHh
Confidence 2234467899999999999999999999999999999999999999987554 468899999999999999887644
No 23
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=100.00 E-value=1.9e-60 Score=459.08 Aligned_cols=303 Identities=42% Similarity=0.696 Sum_probs=264.4
Q ss_pred hhhhhhhccCCcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHH
Q 020805 9 AKDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFM 88 (321)
Q Consensus 9 ~~~i~~~~~~TPL~~~~~l~~~~g~~v~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~AlA~a 88 (321)
++.+...+++|||+++++|+...+++||+|+|++|||||||+|++.+++.++.++|.+.+| ++|+++|+||||+|+|++
T Consensus 2 ~~~~~~~~~~TPl~~~~~l~~~~~~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g-~~vv~~ssGN~g~alA~~ 80 (454)
T TIGR01137 2 RDNIIDLIGNTPLVRLNKVSKGIKCELLAKCEFFNPGGSVKDRIALRMIEDAEASGRLKPG-DTIIEPTSGNTGIGLALV 80 (454)
T ss_pred ccchHHhcCCCceEEccccCCCCCceEEEEEhhcCCCcchHHHHHHHHHHHHHHcCCCCCC-CEEEEeCCcHHHHHHHHH
Confidence 4567889999999999999988888999999999999999999999999999999998877 679999999999999999
Q ss_pred HHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChh---HHHHHHHHHHHhCCCeEEcCCCCCCcchhhhhhchH
Q 020805 89 AAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMK---GAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTG 165 (321)
Q Consensus 89 a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 165 (321)
|+++|++|+||||+++++.|+++++.|||+|+.+++...++ ...+.+.+++++.++.+|++||+|+.++..||.++|
T Consensus 81 a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~t~~ 160 (454)
T TIGR01137 81 AAIKGYKCIIVLPEKMSNEKVDVLKALGAEIVRTPTAAAFDSPESHIGVAKRLVREIPGAHILDQYNNPSNPLAHYDGTG 160 (454)
T ss_pred HHHcCCeEEEEeCCCcCHHHHHHHHHCCCEEEEcCCccCCCchHHHHHHHHHHHHhCCCcEecccCCChhhHHHHHHhhH
Confidence 99999999999999999999999999999999998642233 235567777776546788999999999878999999
Q ss_pred HHHHhhhCCCCCEEEEecCCchhHHHHHHHHHhcCCCcEEEEEecCCCCccCCCC------CCCcccccccCCCCccccc
Q 020805 166 PELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGK------PGPHKIQGIGAGFVPGVLE 239 (321)
Q Consensus 166 ~Ei~~ql~~~~d~vv~p~G~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~g~------~~~~~~~gl~~~~~~~~~~ 239 (321)
.||++|+++.||+||+|+|||||++|+++++|+.+|.++||+|||++++.. .+. ..++.++|++.+..|+.++
T Consensus 161 ~Ei~~q~~~~~d~vv~~vG~Gg~~~G~~~~~~~~~~~~~vi~ve~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 239 (454)
T TIGR01137 161 PEILEQCEGKLDMFVAGAGTGGTITGIARYLKESNPKCRIVGADPEGSILA-QPENLNKTGRTPYKVEGIGYDFIPTVLD 239 (454)
T ss_pred HHHHHHhCCCCCEEEEecCchHHHHHHHHHHHhhCCCCEEEEEecCCCccc-CCCcccCCCCCCccCCCCCCCCCCCcCC
Confidence 999999976899999999999999999999999999999999999998633 221 1234577887666677777
Q ss_pred ccccCEEEEeCHHHHHHHHHHHHHhcCCeEecchHHHHHHHHHHHhcCCCCCCEEEEEecCC------CCCCHHHHHhhc
Q 020805 240 VNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVCSQFA------CITSDSWLIAIT 313 (321)
Q Consensus 240 ~~~~d~~~~V~d~e~~~a~~~l~~~~Gi~~~pss~~a~aa~~~~~~~~~~~~~~vv~i~tgg------~~~~~~~~~~~~ 313 (321)
.+.+|+++.|+|+|+++++++|++++|+++||+||++++++++++++...++++||+++||+ .++.++|+.++.
T Consensus 240 ~~~~d~~~~V~~~e~~~a~~~l~~~~gi~~~~ssg~~~aa~~~~~~~~~~~~~~vv~~~~d~g~~y~~~~~~~~w~~~~~ 319 (454)
T TIGR01137 240 RKVVDEWIKTDDKESFKMARRLIKEEGLLVGGSSGSAVVAALKAAEDELTEDQVIVVLLPDSIRNYMTKFLNDEWMKDNG 319 (454)
T ss_pred chhCCeEEEECHHHHHHHHHHHHHHhCccCcHHHHHHHHHHHHHHHhhcCCCCEEEEEECCCCccccCcccChHHHHhcC
Confidence 88899999999999999999999999999999999999999998874224678999999984 455678887654
No 24
>PRK07476 eutB threonine dehydratase; Provisional
Probab=100.00 E-value=2.8e-61 Score=444.09 Aligned_cols=295 Identities=21% Similarity=0.272 Sum_probs=255.9
Q ss_pred chhhhhhhhccCCcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHH
Q 020805 7 NIAKDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLA 86 (321)
Q Consensus 7 ~~~~~i~~~~~~TPL~~~~~l~~~~g~~v~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~AlA 86 (321)
..+++|...+++|||+++++|++..|.+||+|+|++|||||||||++.+++.++.++|. .++||++|+||||+|+|
T Consensus 8 ~a~~~i~~~i~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~K~R~a~~~i~~a~~~~~----~~gvv~aSsGN~g~alA 83 (322)
T PRK07476 8 RARRRIAGRVRRTPLVASASLSARAGVPVWLKLETLQPTGSFKLRGATNALLSLSAQER----ARGVVTASTGNHGRALA 83 (322)
T ss_pred HHHHHHhCCCCCCCceechhhHHhhCCeEEEEEccCCCCCCchHHHHHHHHHhhhhhhh----CCeEEEECCChHHHHHH
Confidence 46789999999999999999998888999999999999999999999999999998876 14599999999999999
Q ss_pred HHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEcCCCCCCcchhhhhhchHH
Q 020805 87 FMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGP 166 (321)
Q Consensus 87 ~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 166 (321)
++|+++|++|+||||+.+++.|+++++.|||+|+.++. +++++.+.+.+++++. +++|++||+||.+ ++|++++++
T Consensus 84 ~~a~~~G~~~~i~vp~~~~~~k~~~~~~~GA~V~~~~~--~~~~~~~~a~~~~~~~-g~~~~~~~~n~~~-~~g~~t~~~ 159 (322)
T PRK07476 84 YAARALGIRATICMSRLVPANKVDAIRALGAEVRIVGR--SQDDAQAEVERLVREE-GLTMVPPFDDPRI-IAGQGTIGL 159 (322)
T ss_pred HHHHHhCCCEEEEeCCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhc-CCEEeCCCCCcce-eechhHHHH
Confidence 99999999999999999999999999999999999986 4678888898888876 7899999999998 689999999
Q ss_pred HHHhhhCCCCCEEEEecCCchhHHHHHHHHHhcCCCcEEEEEecCCCCccC----CCCC-----CCcccccccCCC----
Q 020805 167 ELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLS----GGKP-----GPHKIQGIGAGF---- 233 (321)
Q Consensus 167 Ei~~ql~~~~d~vv~p~G~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~----~g~~-----~~~~~~gl~~~~---- 233 (321)
||++|++ ++|+||+|+|+||+++|++++||..+|+++||+|||++++.+. .+++ ..+..++++.+.
T Consensus 160 Ei~~Q~~-~~d~iv~~vG~GG~~~Gv~~~~k~~~~~~~vigVe~~~~~~~~~s~~~g~~~~~~~~~t~a~~l~~~~~~~~ 238 (322)
T PRK07476 160 EILEALP-DVATVLVPLSGGGLASGVAAAVKAIRPAIRVIGVSMERGAAMHASLAAGRPVQVEEVPTLADSLGGGIGLDN 238 (322)
T ss_pred HHHHhCc-CCCEEEEEcChHHHHHHHHHHHHHhCCCCEEEEEEECCchHHHHHHHcCCceeCCCCCCccccccccccCCc
Confidence 9999994 6999999999999999999999999999999999999887542 2332 122344553221
Q ss_pred -CcccccccccCEEEEeCHHHHHHHHHHHHHhcCCeEecchHHHHHHHHHHHhcCCCCCCEEEEEecCCCCCCHHHHHhh
Q 020805 234 -VPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVCSQFACITSDSWLIAI 312 (321)
Q Consensus 234 -~~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~~Gi~~~pss~~a~aa~~~~~~~~~~~~~~vv~i~tgg~~~~~~~~~~~ 312 (321)
.+..+.++.+|+++.|+|+|+++++++|++++|+++||+++++++++++. ....++++||+++||||++.+.+.+..
T Consensus 239 ~~~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~~gi~ve~a~a~~laal~~~--~~~~~~~~Vvvi~tGg~~~~~~~~~~~ 316 (322)
T PRK07476 239 RYTFAMCRALLDDVVLLDEAEIAAGIRHAYREERLVVEGAGAVGIAALLAG--KIAARDGPIVVVVSGANIDMELHRRII 316 (322)
T ss_pred HHHHHHHHhcCCeEEEECHHHHHHHHHHHHHhcCceEeChhHHHHHHHHhC--CcccCCCcEEEEECCCCCCHHHHHHHH
Confidence 23345567899999999999999999999999999999999999998842 112334899999999999998887643
No 25
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=100.00 E-value=3.1e-61 Score=455.71 Aligned_cols=296 Identities=21% Similarity=0.258 Sum_probs=257.3
Q ss_pred chhhhhhhhccCCcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHH
Q 020805 7 NIAKDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLA 86 (321)
Q Consensus 7 ~~~~~i~~~~~~TPL~~~~~l~~~~g~~v~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~AlA 86 (321)
..+++|...+++|||+++++|++.+|.+||+|+|++|||||||+|++.+++..+.+... .++||++|+||||+++|
T Consensus 5 ~a~~~i~~~i~~TPl~~~~~ls~~~g~~iy~K~E~~~ptGSfK~RgA~~~i~~l~~~~~----~~gvv~aSsGN~g~a~A 80 (409)
T TIGR02079 5 AARKRLKEVVPHTPLQLNERLSEKYGANIYLKREDLQPVRSYKIRGAYNFLKQLSDAQL----AKGVVCASAGNHAQGFA 80 (409)
T ss_pred HHHHHHhCcCCCCCccccHHHHHHhCCEEEEEecCCCCCCCcHHHHHHHHHHhCCHHhh----CCEEEEECccHHHHHHH
Confidence 35678999999999999999998888999999999999999999999999987533221 15699999999999999
Q ss_pred HHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEE---EEeCCCCChhHHHHHHHHHHHhCCCeEEcCCCCCCcchhhhhhc
Q 020805 87 FMAAAKQYRLIITMPASMSLERRIILRAFGAEL---VLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYET 163 (321)
Q Consensus 87 ~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v---~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 163 (321)
++|+++|++|+||||+.+++.|+++++.|||++ +.++ .+++++.+.+.+++++. +++|++||+||.+ ++|++|
T Consensus 81 ~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~vv~v~~~g--~~~~~a~~~a~~~~~~~-g~~~~~~~~~~~~-~~g~~t 156 (409)
T TIGR02079 81 YACRHLGVHGTVFMPATTPKQKIDRVKIFGGEFIEIILVG--DTFDQCAAAAREHVEDH-GGTFIPPFDDPRI-IEGQGT 156 (409)
T ss_pred HHHHHcCCCEEEEECCCCCHHHHHHHHHcCCCeeEEEEeC--CCHHHHHHHHHHHHHhc-CCEEeCCCCCHhH-hhhhHH
Confidence 999999999999999999999999999999974 3444 35789999999998886 7899999999988 789999
Q ss_pred hHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHHhcCCCcEEEEEecCCCCccC----CCCCC-----CcccccccCCCC
Q 020805 164 TGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLS----GGKPG-----PHKIQGIGAGFV 234 (321)
Q Consensus 164 ~~~Ei~~ql~~~~d~vv~p~G~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~----~g~~~-----~~~~~gl~~~~~ 234 (321)
+++||++|+++.||+||+|+|+||+++|++.++|+.+|+++||||||++++++. .|++. .+.++|++...+
T Consensus 157 i~~Ei~~q~~~~~D~vv~pvG~GG~~~Gia~~~k~~~p~~~vigVep~~~~~~~~s~~~g~~~~~~~~~t~a~g~~v~~~ 236 (409)
T TIGR02079 157 VAAEILDQLPEKPDYVVVPVGGGGLISGLTTYLAGTSPKTKIIGVEPEGAPSMKASLEAGEVVTLDKIDNFVDGAAVKRV 236 (409)
T ss_pred HHHHHHHhcCCCCCEEEEEecHhHHHHHHHHHHHHhCCCCEEEEEEeCCCCcHHHHHHCCCceecCCCCCeeccccCCCC
Confidence 999999999767999999999999999999999999999999999999998764 24431 234567765543
Q ss_pred c---ccccccccCEEEEeCHHHHHHHHHHHHHhcCCeEecchHHHHHHHHHHHhcCCCCCCEEEEEecCCCCCCHHHHHh
Q 020805 235 P---GVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVCSQFACITSDSWLIA 311 (321)
Q Consensus 235 ~---~~~~~~~~d~~~~V~d~e~~~a~~~l~~~~Gi~~~pss~~a~aa~~~~~~~~~~~~~~vv~i~tgg~~~~~~~~~~ 311 (321)
+ +.+...++|+++.|+|+|+.+++++|++++|+++||+||+++|+++++.++ .++++||+|+||||+|++.+.+.
T Consensus 237 g~~~~~~~~~~vd~vv~V~d~e~~~a~~~l~~~~gi~ve~agaa~lAa~~~~~~~--~~~~~Vv~ilsGgn~d~~~~~~~ 314 (409)
T TIGR02079 237 GDLNFKALKDVPDEVTLVPEGAVCTTILDLYNLEGIVAEPAGALSIAALERLGEE--IKGKTVVCVVSGGNNDIERTEEI 314 (409)
T ss_pred cHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHhcCceecchHHHHHHHHHhhhhh--cCCCeEEEEECCCCCCHHHHHHH
Confidence 2 234567899999999999999999999999999999999999999886543 47899999999999999887764
Q ss_pred h
Q 020805 312 I 312 (321)
Q Consensus 312 ~ 312 (321)
.
T Consensus 315 ~ 315 (409)
T TIGR02079 315 R 315 (409)
T ss_pred H
Confidence 3
No 26
>PRK06110 hypothetical protein; Provisional
Probab=100.00 E-value=3.3e-61 Score=443.65 Aligned_cols=296 Identities=22% Similarity=0.240 Sum_probs=258.1
Q ss_pred hhhhhhhhccCCcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHH
Q 020805 8 IAKDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAF 87 (321)
Q Consensus 8 ~~~~i~~~~~~TPL~~~~~l~~~~g~~v~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~AlA~ 87 (321)
.+.+|...+++|||+++++|++..|.+||+|+|++|||||||||++.+++.++.+++... ..|+++|+||||+|+|+
T Consensus 11 a~~~i~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~Rga~~~l~~a~~~~~~~---~~vv~aSsGN~g~alA~ 87 (322)
T PRK06110 11 AAAVVYAAMPPTPQYRWPLLAERLGCEVWVKHENHTPTGAFKVRGGLVYFDRLARRGPRV---RGVISATRGNHGQSVAF 87 (322)
T ss_pred HHHHHhCcCcCCCcccchhHHHHhCCeEEEEeccCCCcCCcHHHHHHHHHHHhhhhcCCC---ceEEEECCCHHHHHHHH
Confidence 566889999999999999999888889999999999999999999999999998876533 45999999999999999
Q ss_pred HHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEcCCCCCCcchhhhhhchHHH
Q 020805 88 MAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPE 167 (321)
Q Consensus 88 aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~E 167 (321)
+|+++|++|+||||+++++.|+++++.|||+|+.+++ +++++.+.+.+++++. ++||+++| ||.+ +.||.|+++|
T Consensus 88 ~a~~~G~~~~ivvp~~~~~~k~~~i~~~GA~V~~~~~--~~~~~~~~a~~~~~~~-~~~~~~~~-~~~~-~~G~~t~~~E 162 (322)
T PRK06110 88 AARRHGLAATIVVPHGNSVEKNAAMRALGAELIEHGE--DFQAAREEAARLAAER-GLHMVPSF-HPDL-VRGVATYALE 162 (322)
T ss_pred HHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhc-CCEEcCCC-CChH-HhccchHHHH
Confidence 9999999999999999999999999999999999974 5788888899988876 78999998 5666 6899999999
Q ss_pred HHhhhCCCCCEEEEecCCchhHHHHHHHHHhcCCCcEEEEEecCCCCccC----CCCCC-----CcccccccCCCC-c--
Q 020805 168 LWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLS----GGKPG-----PHKIQGIGAGFV-P-- 235 (321)
Q Consensus 168 i~~ql~~~~d~vv~p~G~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~----~g~~~-----~~~~~gl~~~~~-~-- 235 (321)
|++|++ ++|+||+|+|+||+++|+++++|+.+|++|||+|||++++++. .++.. .+..+|++.... |
T Consensus 163 i~~q~~-~~D~vv~pvG~Gg~~~Gv~~~~k~~~~~~~vi~Vep~~~~~~~~~~~~g~~~~~~~~~t~a~gl~~~~~~~~~ 241 (322)
T PRK06110 163 LFRAVP-DLDVVYVPIGMGSGICGAIAARDALGLKTRIVGVVSAHAPAYALSFEAGRVVTTPVATTLADGMACRTPDPEA 241 (322)
T ss_pred HHhhCC-CCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEEeeCCChHHHHHHHcCCcccCCCCCCcccccCCCCccHHH
Confidence 999994 7999999999999999999999999999999999999987653 34332 234456543321 2
Q ss_pred ccccccccCEEEEeCHHHHHHHHHHHHHhcCCeEecchHHHHHHHHHHHhcCCCCCCEEEEEecCCCCCCHHHHHhhcC
Q 020805 236 GVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVCSQFACITSDSWLIAITC 314 (321)
Q Consensus 236 ~~~~~~~~d~~~~V~d~e~~~a~~~l~~~~Gi~~~pss~~a~aa~~~~~~~~~~~~~~vv~i~tgg~~~~~~~~~~~~~ 314 (321)
+.+.++.+|+++.|+|+|+++++++|++.+|+++||++++++++++++.+. .++++||+|+||||+|++.+.+....
T Consensus 242 ~~~~~~~~d~~~~Vsd~e~~~a~~~l~~~~gi~~e~ssaa~laa~~~~~~~--~~~~~Vv~i~tGgn~d~~~~~~~~~~ 318 (322)
T PRK06110 242 LEVIRAGADRIVRVTDDEVAAAMRAYFTDTHNVAEGAGAAALAAALQERER--LAGKRVGLVLSGGNIDRAVFARVLAG 318 (322)
T ss_pred HHHHHHhCCeEEEECHHHHHHHHHHHHHHcCcEEehHHHHHHHHHHhChhh--hCCCcEEEEECCCCCCHHHHHHHHhh
Confidence 223457899999999999999999999999999999999999999986553 46889999999999999999886654
No 27
>PRK08639 threonine dehydratase; Validated
Probab=100.00 E-value=4.6e-61 Score=456.63 Aligned_cols=296 Identities=23% Similarity=0.291 Sum_probs=256.1
Q ss_pred hhhhhhhhccCCcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHH
Q 020805 8 IAKDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAF 87 (321)
Q Consensus 8 ~~~~i~~~~~~TPL~~~~~l~~~~g~~v~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~AlA~ 87 (321)
+++++.+.+++|||+++++|++..|++||+|+|++|||||||+|+|.+++.++.+... .++||++|+||||+++|+
T Consensus 15 a~~~i~~~i~~TPl~~~~~ls~~~g~~l~~K~E~~~ptGSfK~RgA~~~i~~l~~~~~----~~~Vv~aSsGN~g~alA~ 90 (420)
T PRK08639 15 AAKRLKDVVPETPLQRNDYLSEKYGANVYLKREDLQPVRSYKLRGAYNAISQLSDEEL----AAGVVCASAGNHAQGVAY 90 (420)
T ss_pred HHHHHhCcCcCCCccchHHHHHHhCCEEEEEecCCCCCCCcHHHHHHHHHHhCCHHhh----CCEEEEECccHHHHHHHH
Confidence 5678999999999999999998888999999999999999999999999988532211 267999999999999999
Q ss_pred HHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeC-CCCChhHHHHHHHHHHHhCCCeEEcCCCCCCcchhhhhhchHH
Q 020805 88 MAAAKQYRLIITMPASMSLERRIILRAFGAELVLTD-PAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGP 166 (321)
Q Consensus 88 aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 166 (321)
+|+++|++|+||||+.+++.|++.++.|||+|+.+. ...+++++.+.+.+++++. +++|++||+|+.+ ++||+|+|+
T Consensus 91 ~a~~~G~~~~IvmP~~~~~~k~~~~r~~GA~vv~v~~~g~~~~~a~~~a~~~a~~~-g~~~~~~~~~~~~-~~G~~tig~ 168 (420)
T PRK08639 91 ACRHLGIPGVIFMPVTTPQQKIDQVRFFGGEFVEIVLVGDTFDDSAAAAQEYAEET-GATFIPPFDDPDV-IAGQGTVAV 168 (420)
T ss_pred HHHHcCCCEEEEECCCChHHHHHHHHHcCCCeeEEEEeCcCHHHHHHHHHHHHHhc-CCcccCCCCChhH-hcchhHHHH
Confidence 999999999999999999999999999999754322 1135789999999998886 7999999999988 789999999
Q ss_pred HHHhhhCCC--CCEEEEecCCchhHHHHHHHHHhcCCCcEEEEEecCCCCccC----CCCC-----CCcccccccCCCC-
Q 020805 167 ELWKGSGGR--IDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLS----GGKP-----GPHKIQGIGAGFV- 234 (321)
Q Consensus 167 Ei~~ql~~~--~d~vv~p~G~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~----~g~~-----~~~~~~gl~~~~~- 234 (321)
||++|+++. ||+||+|+|+||+++|++.++|+.+|+++||||||++++.+. .|.+ ..+.++|++....
T Consensus 169 EI~eq~~~~~~~D~vv~~vG~GG~~aGva~~~k~~~p~~~vigVep~~~~~~~~s~~~g~~~~~~~~~t~a~gi~v~~~g 248 (420)
T PRK08639 169 EILEQLEKEGSPDYVFVPVGGGGLISGVTTYLKERSPKTKIIGVEPAGAASMKAALEAGKPVTLEKIDKFVDGAAVARVG 248 (420)
T ss_pred HHHHhccccCCCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEEEECCCCcHHHHHhCCCceeCCCCCCeecccccCCcc
Confidence 999999655 999999999999999999999999999999999999998763 2333 1244577765433
Q ss_pred --cccccccccCEEEEeCHHHHHHHHHHHHHhcCCeEecchHHHHHHHHHHHhcCCCCCCEEEEEecCCCCCCHHHHHh
Q 020805 235 --PGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVCSQFACITSDSWLIA 311 (321)
Q Consensus 235 --~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~~Gi~~~pss~~a~aa~~~~~~~~~~~~~~vv~i~tgg~~~~~~~~~~ 311 (321)
++.+.++++|+++.|+|+|+.+++++|++++|+++||+||+++++++++.+. .++++||+|+||||++++.+-+-
T Consensus 249 ~~~~~~~~~~vd~~v~V~d~ei~~a~~~l~~~~gi~~e~sga~~lAal~~~~~~--~~~~~vv~v~sGgn~d~~~~~~~ 325 (420)
T PRK08639 249 DLTFEILKDVVDDVVLVPEGAVCTTILELYNKEGIVAEPAGALSIAALELYKDE--IKGKTVVCVISGGNNDIERMPEI 325 (420)
T ss_pred HHHHHHHHHhCCeEEEECHHHHHHHHHHHHHhcCceecchHHHHHHHHHhhhhh--cCCCeEEEEeCCCCCCHHHHHHH
Confidence 3345578899999999999999999999999999999999999999886543 47899999999999998877663
No 28
>cd06448 L-Ser-dehyd Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- , D-serine, or L-threonine to pyruvate/ketobutyrate and ammonia.
Probab=100.00 E-value=1e-60 Score=438.61 Aligned_cols=290 Identities=20% Similarity=0.198 Sum_probs=249.8
Q ss_pred CCcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEE
Q 020805 18 NTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLI 97 (321)
Q Consensus 18 ~TPL~~~~~l~~~~g~~v~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~AlA~aa~~~G~~~~ 97 (321)
+|||+++++|++..|.+||+|+|++|||||||||++.+++.++.++|. .+ .++||++|+||||.|+|++|+.+|++|+
T Consensus 1 ~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~-~~-~~~vv~aSsGN~g~alA~~a~~~G~~~~ 78 (316)
T cd06448 1 KTPLIESTALSKTAGCNVFLKLENLQPSGSFKIRGIGHLCQKSAKQGL-NE-CVHVVCSSGGNAGLAAAYAARKLGVPCT 78 (316)
T ss_pred CCCccccchhhHhhCCeEEEEeccCCCcCChHHHHHHHHHHHHHHhhc-cc-CCeEEEeCCcHHHHHHHHHHHHcCCCEE
Confidence 699999999998778899999999999999999999999999999884 22 3679999999999999999999999999
Q ss_pred EEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEcCCCCCCcchhhhhhchHHHHHhhhCC--C
Q 020805 98 ITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGG--R 175 (321)
Q Consensus 98 ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~Ei~~ql~~--~ 175 (321)
||||+.+++.|+++++.|||+|+.++++ .++++.+.+++++++.++++|++||+||.+ ..||.++++||++|+++ .
T Consensus 79 iv~p~~~~~~k~~~l~~~GA~v~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~n~~~-~~g~~t~~~Ei~~q~~~~~~ 156 (316)
T cd06448 79 IVVPESTKPRVVEKLRDEGATVVVHGKV-WWEADNYLREELAENDPGPVYVHPFDDPLI-WEGHSSMVDEIAQQLQSQEK 156 (316)
T ss_pred EEECCCCCHHHHHHHHHcCCEEEEECCc-hHHHHHHHHHHHHhccCCcEEeCCCCCchh-hccccHHHHHHHHHccccCC
Confidence 9999999999999999999999999864 256677778888776557899999999988 68889999999999975 5
Q ss_pred CCEEEEecCCchhHHHHHHHHHhcC-CCcEEEEEecCCCCccC----CCCC-----CCcccccccCCCCcc---cccccc
Q 020805 176 IDALVSGIGTGGTITGAGKFLKEKN-PNIKLYGIEPTESPVLS----GGKP-----GPHKIQGIGAGFVPG---VLEVNI 242 (321)
Q Consensus 176 ~d~vv~p~G~Gg~~aGi~~~~k~~~-~~~~vigv~~~~~~~~~----~g~~-----~~~~~~gl~~~~~~~---~~~~~~ 242 (321)
||+||+|+|+||+++|++++||+.+ |+++||+|||++++.+. .++. ..+.++|++.+..+. ...++.
T Consensus 157 ~D~vv~~vG~Gg~~~Gv~~~~k~~~~~~~~ii~Vep~g~~~~~~~~~~g~~~~~~~~~t~a~glg~~~~~~~~~~~~~~~ 236 (316)
T cd06448 157 VDAIVCSVGGGGLLNGIVQGLERNGWGDIPVVAVETEGAHSLNASLKAGKLVTLPKITSVATSLGAKTVSSQALEYAQEH 236 (316)
T ss_pred CCEEEEEeCchHHHHHHHHHHHhcCCCCCEEEEEeeCCChHHHHHHHcCCcEecCCCCchhhccCCCCcCHHHHHHHHhc
Confidence 9999999999999999999999996 99999999999997653 2332 124456887665432 334566
Q ss_pred cCEEEEeCHHHHHHHHHHHHHhcCCeEecchHHHHHHHHHHH-----hcCC-CCCCEEEEEecCCCC-CCHHHHHh
Q 020805 243 IDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIA-----KRPE-NAGKLIVVCSQFACI-TSDSWLIA 311 (321)
Q Consensus 243 ~d~~~~V~d~e~~~a~~~l~~~~Gi~~~pss~~a~aa~~~~~-----~~~~-~~~~~vv~i~tgg~~-~~~~~~~~ 311 (321)
.|+++.|+|+|+++++++|++++|+++||+||++++++++.. +++. .++++||+|+||||+ +.+.+.+.
T Consensus 237 ~~~~v~Vsd~e~~~a~~~l~~~~gi~~~~ssaa~laa~~~~~~~~~~~~~~~~~~~~Vv~iltg~n~~~~~~~~~~ 312 (316)
T cd06448 237 NIKSEVVSDRDAVQACLRFADDERILVEPACGAALAVVYSGKILDLQLEVLLTPLDNVVVVVCGGSNITLEQLKEY 312 (316)
T ss_pred CCeEEEECHHHHHHHHHHHHHHcCceechhHHHHHHHHHhCcchhhhcccccCCCCeEEEEECCCCCCCHHHHHHH
Confidence 899999999999999999999999999999999999998532 1112 578899999999998 87777654
No 29
>PRK09224 threonine dehydratase; Reviewed
Probab=100.00 E-value=8.2e-61 Score=462.73 Aligned_cols=294 Identities=22% Similarity=0.274 Sum_probs=261.2
Q ss_pred hhhhhhccCCcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHc-CCCCCCCeEEEeeCCChHHHHHHHH
Q 020805 10 KDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAK-GLITPGESVLIEPTSGNTGIGLAFM 88 (321)
Q Consensus 10 ~~i~~~~~~TPL~~~~~l~~~~g~~v~~K~E~~~ptGS~K~R~a~~~l~~a~~~-g~~~~g~~~vv~~SsGN~g~AlA~a 88 (321)
.++.+.+++|||+++++|++.+|.+||+|+|++|||||||+|+|.+++..+.+. +. ++||++|+||||+|+|++
T Consensus 12 ~~v~~~~~~TPL~~~~~Ls~~~g~~i~lK~E~lqptgSfK~RgA~n~i~~l~~~~~~-----~gvV~aSaGNha~avA~a 86 (504)
T PRK09224 12 ARVYDVAQETPLEKAPKLSARLGNQVLLKREDLQPVFSFKLRGAYNKMAQLTEEQLA-----RGVITASAGNHAQGVALS 86 (504)
T ss_pred HHhcCcCCCCCceehhHhHHHhCCEEEEEecCCCCCCCChHHHHHHHHHhhhHHhcC-----CEEEEECcCHHHHHHHHH
Confidence 478889999999999999988899999999999999999999999999887533 32 679999999999999999
Q ss_pred HHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEcCCCCCCcchhhhhhchHHHH
Q 020805 89 AAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPEL 168 (321)
Q Consensus 89 a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~Ei 168 (321)
|+++|++|+||||+.++..|++.++.+||+|+.++. +++++.+.+.+++++. +++|++||+||.+ ++|++|++.||
T Consensus 87 a~~lGi~~~IvmP~~tp~~K~~~~r~~GA~Vi~~g~--~~~~a~~~a~~l~~~~-g~~~v~~f~~~~~-i~G~gTi~~EI 162 (504)
T PRK09224 87 AARLGIKAVIVMPVTTPDIKVDAVRAFGGEVVLHGD--SFDEAYAHAIELAEEE-GLTFIHPFDDPDV-IAGQGTIAMEI 162 (504)
T ss_pred HHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECC--CHHHHHHHHHHHHHhc-CCEEeCCCCCcHH-HHhHHHHHHHH
Confidence 999999999999999999999999999999999985 5789999999998886 8899999999998 78999999999
Q ss_pred HhhhCCCCCEEEEecCCchhHHHHHHHHHhcCCCcEEEEEecCCCCccC----CCCCC-----CcccccccCCC---Ccc
Q 020805 169 WKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLS----GGKPG-----PHKIQGIGAGF---VPG 236 (321)
Q Consensus 169 ~~ql~~~~d~vv~p~G~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~----~g~~~-----~~~~~gl~~~~---~~~ 236 (321)
++|+++.||+||+|+|+||+++|++.++|..+|+++||||||++++++. .+++. .+.++|++... .++
T Consensus 163 ~~q~~~~~D~vvvpvGgGGliaGia~~lk~~~p~~kVigVe~~~~~~~~~s~~~g~~~~~~~~~~~adg~av~~~g~~~~ 242 (504)
T PRK09224 163 LQQHPHPLDAVFVPVGGGGLIAGVAAYIKQLRPEIKVIGVEPEDSACLKAALEAGERVDLPQVGLFADGVAVKRIGEETF 242 (504)
T ss_pred HHhccCCCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHhcCCCccCCCCCcccCcccCCCccHHHH
Confidence 9999656999999999999999999999999999999999999998753 34432 12346665433 234
Q ss_pred cccccccCEEEEeCHHHHHHHHHHHHHhcCCeEecchHHHHHHHHHHHhcCCCCCCEEEEEecCCCCCCHHHHHhh
Q 020805 237 VLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVCSQFACITSDSWLIAI 312 (321)
Q Consensus 237 ~~~~~~~d~~~~V~d~e~~~a~~~l~~~~Gi~~~pss~~a~aa~~~~~~~~~~~~~~vv~i~tgg~~~~~~~~~~~ 312 (321)
.+.++++|++++|+|+|+.+++++|++.+|+++||+||+++++++++.++...++++||+|+||||++++.+.+..
T Consensus 243 ~~~~~~vd~~v~Vsd~ei~~a~~~l~~~~~~~~epagA~~lAal~~~~~~~~~~g~~vv~i~sG~n~~~~~l~~~~ 318 (504)
T PRK09224 243 RLCQEYVDDVITVDTDEICAAIKDVFEDTRSIAEPAGALALAGLKKYVAQHGIEGETLVAILSGANMNFDRLRYVA 318 (504)
T ss_pred HHHHhcCCeEEEECHHHHHHHHHHHHHhcCeEEcHHHHHHHHHHHHhhhhcCCCCCeEEEEECCCCCCHHHHHHHH
Confidence 5668899999999999999999999999999999999999999999887655568999999999999999887644
No 30
>PRK08198 threonine dehydratase; Provisional
Probab=100.00 E-value=6.9e-61 Score=454.79 Aligned_cols=293 Identities=24% Similarity=0.327 Sum_probs=258.9
Q ss_pred chhhhhhhhccCCcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHH
Q 020805 7 NIAKDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLA 86 (321)
Q Consensus 7 ~~~~~i~~~~~~TPL~~~~~l~~~~g~~v~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~AlA 86 (321)
.++++|.+.+++|||+++++|++..|++||+|+|++|||||||+|++.+++.++.+++. .++||++|+||||+++|
T Consensus 11 ~a~~~i~~~i~~TPl~~~~~ls~~~g~~i~~K~E~~nptGS~K~R~a~~~i~~~~~~~~----~~~vv~aSsGN~g~alA 86 (404)
T PRK08198 11 EARERLKGVVRRTPLEYSRTLSELTGAEVYLKCENLQRTGSFKIRGAYNKIASLSEEER----ARGVVAASAGNHAQGVA 86 (404)
T ss_pred HHHHHHhccCCCCCceehhhHHHHhCCEEEEEECCCCCCCCCHHHHHHHHHHhccHhhc----CCEEEEECCCHHHHHHH
Confidence 36678999999999999999998888999999999999999999999999998875543 36799999999999999
Q ss_pred HHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEcCCCCCCcchhhhhhchHH
Q 020805 87 FMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGP 166 (321)
Q Consensus 87 ~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 166 (321)
++|+++|++|+||||++++..|+++++.|||+|+.++. +++++.+.+++++++. +++|++||+|+.+ ++||+|+|+
T Consensus 87 ~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~Vi~~~~--~~~~~~~~a~~~~~~~-g~~~~~~~~~~~~-~~g~~t~a~ 162 (404)
T PRK08198 87 YAASLLGIKATIVMPETAPLSKVKATRSYGAEVVLHGD--VYDEALAKAQELAEET-GATFVHPFDDPDV-IAGQGTIGL 162 (404)
T ss_pred HHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECC--CHHHHHHHHHHHHHhc-CCEecCCCCCccH-HHHHHHHHH
Confidence 99999999999999999999999999999999999985 5789999999998886 8999999999988 789999999
Q ss_pred HHHhhhCCCCCEEEEecCCchhHHHHHHHHHhcCCCcEEEEEecCCCCccC----CCCCC-----CcccccccCCC---C
Q 020805 167 ELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLS----GGKPG-----PHKIQGIGAGF---V 234 (321)
Q Consensus 167 Ei~~ql~~~~d~vv~p~G~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~----~g~~~-----~~~~~gl~~~~---~ 234 (321)
||++|+ +++|+||+|+|+||+++|++.++|+.+|+++||||||++++++. .|++. .+..+|++... .
T Consensus 163 EI~~q~-~~~d~vv~~vG~GG~~~Gi~~~~k~~~p~~kiigVe~~~~~~~~~~~~~g~~~~~~~~~t~a~g~~v~~~~~~ 241 (404)
T PRK08198 163 EILEDL-PDVDTVVVPIGGGGLISGVATAVKALRPEVRVIGVQAEGAPAMPESLAAGRPVELESVDTIADGIAVKRPGDL 241 (404)
T ss_pred HHHHhC-CCCCEEEEEeCHhHHHHHHHHHHHHhCCCCEEEEEEeCCChHHHHHHHcCCCEecCCCCccccccccCCcCHH
Confidence 999999 47999999999999999999999999999999999999998763 34332 22345554322 2
Q ss_pred cccccccccCEEEEeCHHHHHHHHHHHHHhcCCeEecchHHHHHHHHHHHhcCCCCCCEEEEEecCCCCCCHHHHH
Q 020805 235 PGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVCSQFACITSDSWLI 310 (321)
Q Consensus 235 ~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~~Gi~~~pss~~a~aa~~~~~~~~~~~~~~vv~i~tgg~~~~~~~~~ 310 (321)
++.+.++.+|+++.|+|+|+++++++|++++|+++||+||+++++++++... .++++||+++||||.+.+.+..
T Consensus 242 ~~~~~~~~~d~~v~V~d~e~~~a~~~l~~~~g~~~e~sga~~lAal~~~~~~--~~~~~vv~vl~ggn~~~~~l~~ 315 (404)
T PRK08198 242 TFEIIRELVDDVVTVSDEEIARAILLLLERAKLVVEGAGAVSVAALLSGKLD--VKGKKVVAVLSGGNIDVLLLSR 315 (404)
T ss_pred HHHHHHHhCCEEEEECHHHHHHHHHHHHHhcCeEEehHHHHHHHHHHhchhh--cCCCeEEEEECCCCCCHHHHHH
Confidence 3445678899999999999999999999999999999999999999886532 4688999999999999888776
No 31
>PRK06608 threonine dehydratase; Provisional
Probab=100.00 E-value=1e-60 Score=441.52 Aligned_cols=295 Identities=18% Similarity=0.145 Sum_probs=256.1
Q ss_pred hhhhhhhhccCCcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHH
Q 020805 8 IAKDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAF 87 (321)
Q Consensus 8 ~~~~i~~~~~~TPL~~~~~l~~~~g~~v~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~AlA~ 87 (321)
.+++|...+++|||+++++|++..|++||+|+|++|||||||+|++.+++.++.++|.+. ++||++|+||||+|+|+
T Consensus 13 A~~~i~~~i~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~K~R~a~~~v~~a~~~g~~~---~~vv~~SsGN~g~alA~ 89 (338)
T PRK06608 13 AHNRIKQYLHLTPIVHSESLNEMLGHEIFFKVESLQKTGAFKVRGVLNHLLELKEQGKLP---DKIVAYSTGNHGQAVAY 89 (338)
T ss_pred HHHHHhCcCcCCCccchHhHHHHhCCEEEEEeCCCCCCCCcHHHHHHHHHHHhhhhcCcC---CeEEEECCCHHHHHHHH
Confidence 567899999999999999999888899999999999999999999999999999988743 57999999999999999
Q ss_pred HHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEcCCCCCCcchhhhhhchHHH
Q 020805 88 MAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPE 167 (321)
Q Consensus 88 aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~E 167 (321)
+|+++|++|+||||+.+++.|+++++.+||+|+.++. .+++.+.+++ +++ +++||++||+|+.+ ++|+++++.|
T Consensus 90 ~a~~~G~~~~vv~p~~~~~~k~~~l~~~GA~V~~~~~---~~~~~~~a~~-~~~-~~~~~~~~~~~~~~-~~g~~t~a~E 163 (338)
T PRK06608 90 ASKLFGIKTRIYLPLNTSKVKQQAALYYGGEVILTNT---RQEAEEKAKE-DEE-QGFYYIHPSDSDST-IAGAGTLCYE 163 (338)
T ss_pred HHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECC---HHHHHHHHHH-HHh-CCCEEcCCCCCHHH-hccHHHHHHH
Confidence 9999999999999999999999999999999999974 3567777777 444 48899999999988 6899999999
Q ss_pred HHhhhCCCCCEEEEecCCchhHHHHHHHHHhcCCCcEEEEEecCCCCccC----CCCC------CCcccccccCCCCc--
Q 020805 168 LWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLS----GGKP------GPHKIQGIGAGFVP-- 235 (321)
Q Consensus 168 i~~ql~~~~d~vv~p~G~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~----~g~~------~~~~~~gl~~~~~~-- 235 (321)
|++|++.+||+||+|+|+||+++|+++++|..+|.++||+|||++++.+. .++. ..+..+|++.+...
T Consensus 164 i~~q~~~~~D~vv~~vG~GGt~~Gi~~~~k~~~~~~~vigVep~~~~~~~~s~~~g~~~~~~~~~~t~~~gl~~~~~~~~ 243 (338)
T PRK06608 164 ALQQLGFSPDAIFASCGGGGLISGTYLAKELISPTSLLIGSEPLNANDAYLSLKNNKIYRLNYSPNTIADGLKTLSVSAR 243 (338)
T ss_pred HHHhcCCCcCEEEEeechhHHHHHHHHHHHhcCCCCEEEEEeeCCChHHHHHHHcCCeEeCCCCCCCeecccCCCCCCHH
Confidence 99999768999999999999999999999999999999999999997532 3432 12345677653321
Q ss_pred -ccccccccCEEEEeCHHHHHHHHHHHHHhcCCeEecchHHHHHHHHHHHhcCCCCCCEEEEEecCCCCCCHHHHHhhc
Q 020805 236 -GVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVCSQFACITSDSWLIAIT 313 (321)
Q Consensus 236 -~~~~~~~~d~~~~V~d~e~~~a~~~l~~~~Gi~~~pss~~a~aa~~~~~~~~~~~~~~vv~i~tgg~~~~~~~~~~~~ 313 (321)
+.+. +.+|+++.|+|+|+++++++|++.+|+++||+||++++++++++++. .++++||+|+||||++.+.+.+.+.
T Consensus 244 ~~~~~-~~~d~~v~Vsd~e~~~a~~~l~~~~gi~vepssaa~laa~~~~~~~~-~~~~~Vv~v~tgg~~d~~~~~~~~~ 320 (338)
T PRK06608 244 TFEYL-KKLDDFYLVEEYEIYYWTAWLTHLLKVICEPSSAINMVAVVNWLKTQ-SKPQKLLVILSGGNIDPILYNELWK 320 (338)
T ss_pred HHHHH-HhCCCEEEECHHHHHHHHHHHHHHcCcEEchHHHHHHHHHHhhchhh-cCCCeEEEEeCCCccCHHHHHHHHH
Confidence 2222 34799999999999999999999999999999999999999987653 4688999999999999888777554
No 32
>TIGR02991 ectoine_eutB ectoine utilization protein EutB. Members of this protein family are EutB, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. Members of this family resemble threonine dehydratases.
Probab=100.00 E-value=1.6e-60 Score=437.43 Aligned_cols=293 Identities=21% Similarity=0.248 Sum_probs=254.1
Q ss_pred chhhhhhhhccCCcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHH
Q 020805 7 NIAKDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLA 86 (321)
Q Consensus 7 ~~~~~i~~~~~~TPL~~~~~l~~~~g~~v~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~AlA 86 (321)
..+++|...+++|||+++++|+...|.+||+|+|++|||||||||++.+++.++.+... ..+||++|+||||+|+|
T Consensus 8 ~a~~~i~~~i~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~K~R~a~~~i~~~~~~~~----~~~vv~aSsGN~g~alA 83 (317)
T TIGR02991 8 RAAARISGRVEETPLVESPSLSELCGVPVHLKLEHRQTTGSFKLRGATNAVLSLSDTQR----AAGVVAASTGNHGRALA 83 (317)
T ss_pred HHHHHHhCcCCCCCceechhhHHhhCCeEEEEeccCCCCCCcHHHHHHHHHHhhhHhcc----CCeEEEECCCHHHHHHH
Confidence 46778999999999999999998788899999999999999999999999988764321 15699999999999999
Q ss_pred HHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEcCCCCCCcchhhhhhchHH
Q 020805 87 FMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGP 166 (321)
Q Consensus 87 ~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 166 (321)
++|+++|++|+||||+.+++.|+++++.|||+|+.++. +++++.+.+++++++. +++|++||+||.+ ++||+|+++
T Consensus 84 ~~a~~~G~~~~v~~p~~~~~~k~~~~~~~GA~V~~~~~--~~~~~~~~a~~~~~~~-g~~~~~~~~n~~~-~~g~~t~a~ 159 (317)
T TIGR02991 84 YAAAEEGVRATICMSELVPQNKVDEIRRLGAEVRIVGR--SQDDAQEEVERLVADR-GLTMLPPFDHPDI-VAGQGTLGL 159 (317)
T ss_pred HHHHHhCCCEEEEcCCCCCHHHHHHHHHcCCEEEEeCC--CHHHHHHHHHHHHHhc-CCEeeCCCCChHH-HhhHHHHHH
Confidence 99999999999999999999999999999999999996 4678888888888876 7899999999988 689999999
Q ss_pred HHHhhhCCCCCEEEEecCCchhHHHHHHHHHhcCCCcEEEEEecCCCCccC----CCCC-----CCcccccccC--C---
Q 020805 167 ELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLS----GGKP-----GPHKIQGIGA--G--- 232 (321)
Q Consensus 167 Ei~~ql~~~~d~vv~p~G~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~----~g~~-----~~~~~~gl~~--~--- 232 (321)
||++|++ ++|+||+|+|+||+++|+++++|+.+|+++||+|||++++.+. .+++ .++.+++++. +
T Consensus 160 Ei~~q~~-~~d~vvv~~G~Gg~~~Gi~~~~k~~~p~~~vigvep~~~~~~~~s~~~g~~~~~~~~~tia~~l~~g~~~~~ 238 (317)
T TIGR02991 160 EVVEQMP-DLATVLVPLSGGGLASGVAMAVKAARPDTRVIGVSMERGAAMKASLQAGRPVLVAELPTLADSLGGGIGLDN 238 (317)
T ss_pred HHHHhCC-CCCEEEEEcChhHHHHHHHHHHHHhCCCCEEEEEEECCchHHHHHHHcCCcccCCCCCChhhhhhhccCCCC
Confidence 9999994 6899999999999999999999999999999999999887653 2332 2234455421 1
Q ss_pred CCcccccccccCEEEEeCHHHHHHHHHHHHHhcCCeEecchHHHHHHHHHHHhcCCCCCCEEEEEecCCCCCCHHHHHh
Q 020805 233 FVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVCSQFACITSDSWLIA 311 (321)
Q Consensus 233 ~~~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~~Gi~~~pss~~a~aa~~~~~~~~~~~~~~vv~i~tgg~~~~~~~~~~ 311 (321)
..++.+.++.+|+++.|+|+|+++++++|++.+|+++||++|+++++++.... .++++||+|+||||++.+.+.+.
T Consensus 239 ~~~~~~~~~~vd~~v~V~d~e~~~a~~~l~~~~g~~ve~s~a~~~Aal~~~~~---~~~~~vvvvltG~n~~~~~~~~~ 314 (317)
T TIGR02991 239 RVTFAMCKALLDEIVLVSEAEIAAGIRHAYAEEREIVEGAGAVGIAALLAGKI---KNPGPCAVIVSGRNIDMDLHKRI 314 (317)
T ss_pred HHHHHHHHHhCCeEEEECHHHHHHHHHHHHHhCCcEEcchHHHHHHHHHcCcc---ccCCcEEEEeCCCCCCHHHHHHH
Confidence 23455667889999999999999999999999999999999999999974211 24678999999999999987653
No 33
>PRK08813 threonine dehydratase; Provisional
Probab=100.00 E-value=2e-60 Score=437.84 Aligned_cols=281 Identities=22% Similarity=0.250 Sum_probs=247.6
Q ss_pred hhhhhhhhccCCcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHH
Q 020805 8 IAKDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAF 87 (321)
Q Consensus 8 ~~~~i~~~~~~TPL~~~~~l~~~~g~~v~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~AlA~ 87 (321)
.+.+|+..+.+|||++++.+ +||+|+|++|||||||+|++.+++..+.+.+.. +.||++|+||||+|+|+
T Consensus 29 A~~~i~~~i~~TPL~~~~~l------~v~lK~E~~nptGSfK~RgA~~~l~~a~~~~~~----~~VV~aSsGN~G~alA~ 98 (349)
T PRK08813 29 AQARLRRYLSPTPLHYAERF------GVWLKLENLQRTGSYKVRGALNALLAGLERGDE----RPVICASAGNHAQGVAW 98 (349)
T ss_pred HHHHHhCcCCCCCeEECCCC------cEEEEecCCCCcCCCHHHHHHHHHHHHHHcCCC----CeEEEECCCHHHHHHHH
Confidence 56789999999999998765 499999999999999999999999999998862 46999999999999999
Q ss_pred HHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEcCCCCCCcchhhhhhchHHH
Q 020805 88 MAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPE 167 (321)
Q Consensus 88 aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~E 167 (321)
+|+++|++|+||||+++++.|+++++.|||+|+.++. +++++.+.+++++++. +++|++||+||.+ ++||+|+|+|
T Consensus 99 aa~~~Gi~~~IvvP~~~~~~K~~~i~~~GAeVv~~g~--~~~~a~~~a~~la~~~-g~~~v~~~~np~~-i~G~~Tig~E 174 (349)
T PRK08813 99 SAYRLGVQAITVMPHGAPQTKIAGVAHWGATVRQHGN--SYDEAYAFARELADQN-GYRFLSAFDDPDV-IAGQGTVGIE 174 (349)
T ss_pred HHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhc-CCEEcCccCChHH-HHHHHHHHHH
Confidence 9999999999999999999999999999999999975 5789999999999886 8999999999998 7899999999
Q ss_pred HHhhhCCCCCEEEEecCCchhHHHHHHHHHhcCCCcEEEEEecCCCCccC---CCCC-----CCcccccccCC---CCcc
Q 020805 168 LWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLS---GGKP-----GPHKIQGIGAG---FVPG 236 (321)
Q Consensus 168 i~~ql~~~~d~vv~p~G~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~---~g~~-----~~~~~~gl~~~---~~~~ 236 (321)
|++|. ||+||+|+|+||+++|+++++|+ +.++||+|||++++.+. .+.. ..+.++|++.. ..++
T Consensus 175 I~e~~---pD~VvvpvGgGGliaGia~~lk~--~~~rVigVqpega~~~~~s~~g~~~~~~~~~tiadgl~~~~p~~~~~ 249 (349)
T PRK08813 175 LAAHA---PDVVIVPIGGGGLASGVALALKS--QGVRVVGAQVEGVDSMARAIRGDLREIAPVATLADGVKVKIPGFLTR 249 (349)
T ss_pred HHcCC---CCEEEEEeCccHHHHHHHHHHhc--CCCEEEEEEECCCchHHHHHcCCCcccCCCCceecccccCCcchhHH
Confidence 99974 79999999999999999999995 56899999999987642 1221 23456777643 2345
Q ss_pred cccccccCEEEEeCHHHHHHHHHHHHHhcCCeEecchHHHHHHHHHHHhcCCCCCCEEEEEecCCCCCCHHHHHhhc
Q 020805 237 VLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVCSQFACITSDSWLIAIT 313 (321)
Q Consensus 237 ~~~~~~~d~~~~V~d~e~~~a~~~l~~~~Gi~~~pss~~a~aa~~~~~~~~~~~~~~vv~i~tgg~~~~~~~~~~~~ 313 (321)
.+.++.+|+++.|+|+|+.+++++|++++|+++||+||+++++++++ ++++|++|+||||+|.+.+.+...
T Consensus 250 ~i~~~~vd~vv~Vsd~ei~~a~~~l~~~~gl~vE~aga~alAa~~~~------~~~~v~~vlsGgN~d~~~~~~~~~ 320 (349)
T PRK08813 250 RLCSSLLDDVVIVREAELRETLVRLALEEHVIAEGAGALALAAGRRV------SGKRKCAVVSGGNIDATVLATLLS 320 (349)
T ss_pred HHHHHhCCeEEEECHHHHHHHHHHHHHHcCcEEEEcHHHHHHHHHHh------CCCCEEEEECCCCCCHHHHHHHHH
Confidence 56678899999999999999999999999999999999999998762 467899999999999988876443
No 34
>PRK06815 hypothetical protein; Provisional
Probab=100.00 E-value=1.7e-60 Score=438.03 Aligned_cols=293 Identities=25% Similarity=0.298 Sum_probs=255.5
Q ss_pred chhhhhhhhccCCcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHH
Q 020805 7 NIAKDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLA 86 (321)
Q Consensus 7 ~~~~~i~~~~~~TPL~~~~~l~~~~g~~v~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~AlA 86 (321)
..++++.+.+++|||+++++|++..|.+||+|+|++|||||||||++.+++..+.+... ..+||++|+||||+|+|
T Consensus 9 ~a~~~~~~~i~~TPLv~~~~l~~~~g~~i~~K~E~~nptgS~KdR~a~~~~~~l~~~~~----~~~vv~aSsGN~g~alA 84 (317)
T PRK06815 9 EAHQRLRPQVRVTPLEHSPLLSQHTGCEVYLKCEHLQHTGSFKFRGASNKLRLLNEAQR----QQGVITASSGNHGQGVA 84 (317)
T ss_pred HHHHHhhCCCCCCCccccHhHHHhhCCeEEEEecCCCCCCCcHHHHHHHHHHhcchhhc----CceEEEECCChHHHHHH
Confidence 46778999999999999999998788999999999999999999999999987543321 25699999999999999
Q ss_pred HHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEcCCCCCCcchhhhhhchHH
Q 020805 87 FMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGP 166 (321)
Q Consensus 87 ~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 166 (321)
++|+++|++|+||||..+++.|++.++.+||+|+.++. +++++...+++++++. +++|++||+|+.+ +.||+++++
T Consensus 85 ~~a~~~G~~~~i~~p~~~~~~k~~~~~~~GA~V~~~~~--~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~-~~g~~t~a~ 160 (317)
T PRK06815 85 LAAKLAGIPVTVYAPEQASAIKLDAIRALGAEVRLYGG--DALNAELAARRAAEQQ-GKVYISPYNDPQV-IAGQGTIGM 160 (317)
T ss_pred HHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECC--CHHHHHHHHHHHHHhc-CCEEecCCCChhh-hcchhHHHH
Confidence 99999999999999999999999999999999999996 3678888888888876 7889999999887 689999999
Q ss_pred HHHhhhCCCCCEEEEecCCchhHHHHHHHHHhcCCCcEEEEEecCCCCccC----CCCCC-----CcccccccCCCCc--
Q 020805 167 ELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLS----GGKPG-----PHKIQGIGAGFVP-- 235 (321)
Q Consensus 167 Ei~~ql~~~~d~vv~p~G~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~----~g~~~-----~~~~~gl~~~~~~-- 235 (321)
||++|++ .||+||+|+|+||+++|++.++|+++|+++||+|||++++.+. .++.. .+.++|++.+..|
T Consensus 161 Ei~~q~~-~~d~vv~~vG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~~~~~~ 239 (317)
T PRK06815 161 ELVEQQP-DLDAVFVAVGGGGLISGIATYLKTLSPKTEIIGCWPANSPSLYTSLEAGEIVEVAEQPTLSDGTAGGVEPGA 239 (317)
T ss_pred HHHHhcC-CCCEEEEECcHHHHHHHHHHHHHHhCCCCEEEEEEeCCCCcHHHHHHCCCcccCCCCCChhhhhccCCcccH
Confidence 9999995 6999999999999999999999999999999999999998663 23321 2345666433222
Q ss_pred --ccccccccCEEEEeCHHHHHHHHHHHHHhcCCeEecchHHHHHHHHHHHhcCCCCCCEEEEEecCCCCCCHHHHH
Q 020805 236 --GVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVCSQFACITSDSWLI 310 (321)
Q Consensus 236 --~~~~~~~~d~~~~V~d~e~~~a~~~l~~~~Gi~~~pss~~a~aa~~~~~~~~~~~~~~vv~i~tgg~~~~~~~~~ 310 (321)
+.+..+++|+++.|+|+|+++++++|++.+|+++||++|+++++++++.++ .++++||+|+||||++.+.+.+
T Consensus 240 ~~~~~~~~~~~~~~~V~d~e~~~a~~~la~~~gi~vepssg~alaa~~~~~~~--~~~~~vv~i~tG~~~~~~~~~~ 314 (317)
T PRK06815 240 ITFPLCQQLIDQKVLVSEEEIKEAMRLIAETDRWLIEGAAGVALAAALKLAPR--YQGKKVAVVLCGKNIVLEKYLE 314 (317)
T ss_pred HHHHHHHHhCCeEEEECHHHHHHHHHHHHHhcCCeEecHHHHHHHHHHhCchh--cCCCcEEEEECCCCCCHHHHHH
Confidence 334567899999999999999999999999999999999999999997765 4688999999999999887765
No 35
>PRK07334 threonine dehydratase; Provisional
Probab=100.00 E-value=2.1e-60 Score=450.43 Aligned_cols=292 Identities=22% Similarity=0.259 Sum_probs=258.7
Q ss_pred hhhhhhhhccCCcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHH
Q 020805 8 IAKDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAF 87 (321)
Q Consensus 8 ~~~~i~~~~~~TPL~~~~~l~~~~g~~v~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~AlA~ 87 (321)
.+++|...+++|||+++++|++.+|.+||+|+|++|||||||||++.+++.++.+... .+.||++|+||||+|+|+
T Consensus 13 a~~~i~~~i~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~KdR~a~~~i~~~~~~~~----~~~vv~aSsGN~g~alA~ 88 (403)
T PRK07334 13 AAARLAGQVLRTPCVHSRTLSQITGAEVWLKFENLQFTASFKERGALNKLLLLTEEER----ARGVIAMSAGNHAQGVAY 88 (403)
T ss_pred HHHHHhCCCCCCCccchHHHHHhhCCeEEEEeccCCCCCCchHHHHHHHHHhcCHHHh----CCcEEEECCcHHHHHHHH
Confidence 5678999999999999999998888899999999999999999999999998754332 145999999999999999
Q ss_pred HHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEcCCCCCCcchhhhhhchHHH
Q 020805 88 MAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPE 167 (321)
Q Consensus 88 aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~E 167 (321)
+|+++|++|+||||+.+++.|+++++.|||+|+.+++ +++++.+.+++++++. +++|++||+||.+ .+||+|+++|
T Consensus 89 ~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~--~~~~~~~~a~~l~~~~-~~~~~~~~~~~~~-~~g~~t~~~E 164 (403)
T PRK07334 89 HAQRLGIPATIVMPRFTPTVKVERTRGFGAEVVLHGE--TLDEARAHARELAEEE-GLTFVHPYDDPAV-IAGQGTVALE 164 (403)
T ss_pred HHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECc--CHHHHHHHHHHHHHhc-CCEecCCCCCHHH-HHhHHHHHHH
Confidence 9999999999999999999999999999999999975 5788999999998876 8899999999988 6999999999
Q ss_pred HHhhhCCCCCEEEEecCCchhHHHHHHHHHhcCCCcEEEEEecCCCCccCC---CCC----CCcccccccCC---CCccc
Q 020805 168 LWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSG---GKP----GPHKIQGIGAG---FVPGV 237 (321)
Q Consensus 168 i~~ql~~~~d~vv~p~G~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~---g~~----~~~~~~gl~~~---~~~~~ 237 (321)
|++|+ +.+|+||+|+|+||+++|+++++|..+|+++||+|||++++++.. +.. .++.++|++.+ ..|+.
T Consensus 165 i~~q~-~~~d~vv~~vG~GG~~~Gi~~~lk~~~~~~~vi~ve~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~ 243 (403)
T PRK07334 165 MLEDA-PDLDTLVVPIGGGGLISGMATAAKALKPDIEIIGVQTELYPSMYAAIKGVALPCGGSTIAEGIAVKQPGQLTLE 243 (403)
T ss_pred HHhcC-CCCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEEEECCCchHHHHHhCCCccCCCCCccceecCCCccHHHHH
Confidence 99999 579999999999999999999999999999999999999977632 111 23456787743 34566
Q ss_pred ccccccCEEEEeCHHHHHHHHHHHHHhcCCeEecchHHHHHHHHHHHhcCCCCCCEEEEEecCCCCCCHHHHH
Q 020805 238 LEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVCSQFACITSDSWLI 310 (321)
Q Consensus 238 ~~~~~~d~~~~V~d~e~~~a~~~l~~~~Gi~~~pss~~a~aa~~~~~~~~~~~~~~vv~i~tgg~~~~~~~~~ 310 (321)
+++..+|+++.|+|+|+++++++|++.+|+++||+||+++++++++.+. .++++||+++||||++.+.+-+
T Consensus 244 ~~~~~~d~~v~V~d~e~~~a~~~l~~~~gi~v~~s~a~~~aa~~~~~~~--~~~~~vv~i~~ggn~d~~~l~~ 314 (403)
T PRK07334 244 IVRRLVDDILLVSEADIEQAVSLLLEIEKTVVEGAGAAGLAALLAYPER--FRGRKVGLVLSGGNIDTRLLAN 314 (403)
T ss_pred HHHHhCCeEEEECHHHHHHHHHHHHHhcCCEEechHHHHHHHHHhCchh--cCCCeEEEEECCCCCCHHHHHH
Confidence 7778899999999999999999999999999999999999999886553 4688999999999999887755
No 36
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=100.00 E-value=2.5e-60 Score=447.73 Aligned_cols=281 Identities=22% Similarity=0.304 Sum_probs=249.4
Q ss_pred CcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEE
Q 020805 19 TPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLII 98 (321)
Q Consensus 19 TPL~~~~~l~~~~g~~v~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~AlA~aa~~~G~~~~i 98 (321)
|||+++++|++..|++||+|+|++|||||||||++.+++.++.+++.. ++||++|+||||+|+|++|+++|++|+|
T Consensus 1 TPl~~~~~ls~~~g~~i~~K~E~~~ptgS~K~R~a~~~i~~~~~~~~~----~~vv~aSsGN~g~alA~~a~~~G~~~~i 76 (380)
T TIGR01127 1 TPLIYSTTLSDITGSEVYLKLENLQKTGSFKIRGALNKIANLSEDQRQ----RGVVAASAGNHAQGVAYAAKKFGIKAVI 76 (380)
T ss_pred CCceehHHHHHHhCCeEEEEecCCCCCCCcHHHHHHHHHHhcchhccC----CEEEEECCCHHHHHHHHHHHHcCCCEEE
Confidence 999999999988889999999999999999999999999999887752 4699999999999999999999999999
Q ss_pred EecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEcCCCCCCcchhhhhhchHHHHHhhhCCCCCE
Q 020805 99 TMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDA 178 (321)
Q Consensus 99 vvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~Ei~~ql~~~~d~ 178 (321)
|||+.++..|+++++.|||+|+.++. +++++.+.+++++++. +++|++||+|+.+ ++||+|++.||++|++ +||+
T Consensus 77 v~p~~~~~~k~~~~~~~GA~V~~~~~--~~~~a~~~a~~~~~~~-~~~~~~~~~~~~~-~~g~~t~~~Ei~~q~~-~~D~ 151 (380)
T TIGR01127 77 VMPESAPPSKVKATKSYGAEVILHGD--DYDEAYAFATSLAEEE-GRVFVHPFDDEFV-MAGQGTIGLEIMEDIP-DVDT 151 (380)
T ss_pred EEcCCCcHHHHHHHHHCCCEEEEECC--CHHHHHHHHHHHHHhc-CCEecCCCCChhh-hhhhHHHHHHHHHhCC-CCCE
Confidence 99999999999999999999999985 5789999999998886 7899999999988 7999999999999994 7999
Q ss_pred EEEecCCchhHHHHHHHHHhcCCCcEEEEEecCCCCccC----CCCCC-----CcccccccCCC---CcccccccccCEE
Q 020805 179 LVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLS----GGKPG-----PHKIQGIGAGF---VPGVLEVNIIDEV 246 (321)
Q Consensus 179 vv~p~G~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~----~g~~~-----~~~~~gl~~~~---~~~~~~~~~~d~~ 246 (321)
||+|+|+||+++|++.++|..+|++|||||||++++++. .+++. .+..+|++... .++.+..+.+|++
T Consensus 152 vv~~vG~Gg~~aGi~~~~k~~~p~~kvigVe~~~~~~~~~~~~~g~~~~~~~~~~~a~g~~~~~~~~~~~~~~~~~vd~~ 231 (380)
T TIGR01127 152 VIVPVGGGGLISGVASAAKQINPNVKVIGVEAEGAPSMYESLREGKIKAVESVRTIADGIAVKKPGDLTFNIIKEYVDDV 231 (380)
T ss_pred EEEEeChHHHHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHHcCCceecCCCCCeecchhCCCccHHHHHHHHHhCCEE
Confidence 999999999999999999999999999999999997653 34332 23456665432 2344566889999
Q ss_pred EEeCHHHHHHHHHHHHHhcCCeEecchHHHHHHHHHHHhcCCCCCCEEEEEecCCCCCCHHHHH
Q 020805 247 VQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVCSQFACITSDSWLI 310 (321)
Q Consensus 247 ~~V~d~e~~~a~~~l~~~~Gi~~~pss~~a~aa~~~~~~~~~~~~~~vv~i~tgg~~~~~~~~~ 310 (321)
+.|+|+|+.+++++|++++|+++||++|++++++++... ..++++||+++||||+|.+.+..
T Consensus 232 v~V~d~e~~~a~~~l~~~~gi~~e~s~a~~laa~~~~~~--~~~~~~vv~i~sGGn~d~d~l~~ 293 (380)
T TIGR01127 232 VTVDEEEIANAIYLLLERHKILAEGAGAAGVAALLEQKV--DVKGKKIAVVLSGGNIDLNLLNK 293 (380)
T ss_pred EEECHHHHHHHHHHHHHhcCeEechHHHHHHHHHHhCcc--ccCCCeEEEEeCCCCCCHHHHHH
Confidence 999999999999999999999999999999999987432 24688999999999999887654
No 37
>PRK02991 D-serine dehydratase; Provisional
Probab=100.00 E-value=1.6e-59 Score=444.14 Aligned_cols=296 Identities=21% Similarity=0.250 Sum_probs=254.7
Q ss_pred ccCCcceecccccCCCC--------ceEEEEeCCCCC-CCchhhHHHHHHHHH-----HHHcCCCCCCC-----------
Q 020805 16 IGNTPLVYLNNIVNGCV--------ARIAAKLEMMEP-CSSVKDRIGYSMISD-----AEAKGLITPGE----------- 70 (321)
Q Consensus 16 ~~~TPL~~~~~l~~~~g--------~~v~~K~E~~~p-tGS~K~R~a~~~l~~-----a~~~g~~~~g~----------- 70 (321)
+++|||++++.+++.+| .+||+|+|++|| |||||+|++.+++.. +++.|.+.|+.
T Consensus 73 ~~~TPL~~~~~l~~~~g~~~~~~~~~~V~lK~E~~np~tGSFK~RGA~~~i~~l~~~~a~~~G~~~~~~~~~~l~~~~~~ 152 (441)
T PRK02991 73 IIESPLVAIPAMQKALEKEYGQPISGRLLLKKDSHLPISGSIKARGGIYEVLKHAEKLALEAGLLTLDDDYSKLASPEFR 152 (441)
T ss_pred ccCCCceehHHHHHHhcccccCCcCceEEEEEcCCCCCcCChHHHHHHHHHHHhhHHHHHHhCCCCcCcchhhhcchhhh
Confidence 89999999999987654 699999999999 999999999999875 45778776653
Q ss_pred -----eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCe
Q 020805 71 -----SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNA 145 (321)
Q Consensus 71 -----~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~ 145 (321)
.+||++|+||||+|+|++|+.+|++|+||||+++++.|+++++.|||+|+.++. +++++.+.+++++++.+++
T Consensus 153 ~~~~~~~VV~aSsGN~G~alA~aA~~~G~~~tIvvP~~a~~~K~~~ir~~GAeVi~~~~--~~~~a~~~A~~la~~~~~~ 230 (441)
T PRK02991 153 QFFSQYSIAVGSTGNLGLSIGIMSAALGFKVTVHMSADARQWKKDKLRSHGVTVVEYEG--DYGVAVEEGRKAAESDPNC 230 (441)
T ss_pred hhccCcEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECC--CHHHHHHHHHHHHHhcCCe
Confidence 479999999999999999999999999999999999999999999999999996 5789999999998876568
Q ss_pred EEcCCCCCCcchhhhhhchHHHHHhhhCC--------CCCEEEEecCCchhHHHHHHHHHhc-CCCcEEEEEecCCCCcc
Q 020805 146 YMLQQFENPANPKIHYETTGPELWKGSGG--------RIDALVSGIGTGGTITGAGKFLKEK-NPNIKLYGIEPTESPVL 216 (321)
Q Consensus 146 ~~~~~~~~~~~~~~g~~~~~~Ei~~ql~~--------~~d~vv~p~G~Gg~~aGi~~~~k~~-~~~~~vigv~~~~~~~~ 216 (321)
||+++++++.. ++||+|+++||++|+++ .||+||+|+|+||+++|+++++|+. +|+++||+|||++++++
T Consensus 231 ~~~~~~~~~~~-iaG~~Tig~EI~eQl~~~~~~vD~~~Pd~VvvpvGgGGliaGia~~lk~~~~~~~kVigVEp~ga~~~ 309 (441)
T PRK02991 231 YFIDDENSRTL-FLGYAVAGLRLKAQLAEQGIVVDADHPLFVYLPCGVGGGPGGVAFGLKLAFGDHVHCFFAEPTHSPCM 309 (441)
T ss_pred EeCCCCCchhH-HHhHHHHHHHHHHHhhhccCccccCCCCEEEEEeCccHHHHHHHHHHHHhcCCCCEEEEEecCCChHH
Confidence 99999877766 89999999999999953 2679999999999999999999997 68899999999998754
Q ss_pred C----CCCC-----------CCcccccccCCCC---cccccccccCEEEEeCHHHHHHHHHHHHHhcCCeEecchHHHHH
Q 020805 217 S----GGKP-----------GPHKIQGIGAGFV---PGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAA 278 (321)
Q Consensus 217 ~----~g~~-----------~~~~~~gl~~~~~---~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~~Gi~~~pss~~a~a 278 (321)
. .|+. ..+.++|++.+.. ++.+.++.+|+++.|+|+|+++++++|++++|+++||++|++++
T Consensus 310 ~~s~~~G~~~~~~~~~~g~~~~Tiadgl~~~~~~~~~~~~~~~~vd~~v~VsD~ei~~a~~~L~~~~gi~vEpS~AaalA 389 (441)
T PRK02991 310 LLGLMTGLHDQISVQDIGIDNLTAADGLAVGRASGFVGRAMERLLDGVYTVSDETLYRLLGLLADTEGIRLEPSALAGMA 389 (441)
T ss_pred HHHHhcCCCcceeccccCCCCcchhhhhcCCCcchhHHHHHHHhCCeEEEECHHHHHHHHHHHHHhcCceeeHHHHHHHH
Confidence 2 3332 1244577766542 24455678999999999999999999999999999999999999
Q ss_pred HHHHHHhcCC----------CCCCEEEEEecCCCCCCHHHHHhhcC
Q 020805 279 AAIEIAKRPE----------NAGKLIVVCSQFACITSDSWLIAITC 314 (321)
Q Consensus 279 a~~~~~~~~~----------~~~~~vv~i~tgg~~~~~~~~~~~~~ 314 (321)
+++++.+... .++++||++.|||+..+.+.+++|..
T Consensus 390 a~~~l~~~~~~~~~~~l~~~~~~~~vv~~~~gg~~~~~~~~~~~~~ 435 (441)
T PRK02991 390 GPVRVCASVAYLQRHGLSEQLKNATHLVWATGGSMVPEEEMEQYLA 435 (441)
T ss_pred HHHHHHhCHHHHHHcCCccccCCCEEEEEECCCCCCCHHHHHHHHH
Confidence 9987655321 15789999999999999998888763
No 38
>PRK08246 threonine dehydratase; Provisional
Probab=100.00 E-value=9.7e-60 Score=431.27 Aligned_cols=285 Identities=24% Similarity=0.316 Sum_probs=246.7
Q ss_pred hhhhhhhhccCCcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHH
Q 020805 8 IAKDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAF 87 (321)
Q Consensus 8 ~~~~i~~~~~~TPL~~~~~l~~~~g~~v~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~AlA~ 87 (321)
.+++|...+++|||+++++++.+ +.+||+|+|++|||||||||++.+++.++.+ + .++||++|+||||+|+|+
T Consensus 13 a~~~i~~~i~~TPl~~~~~l~~~-~~~i~~K~E~~nptGS~K~R~a~~~~~~~~~-~-----~~~vv~aSsGN~g~a~A~ 85 (310)
T PRK08246 13 AAQRIAPHIRRTPVLEADGAGFG-PAPVWLKLEHLQHTGSFKARGAFNRLLAAPV-P-----AAGVVAASGGNAGLAVAY 85 (310)
T ss_pred HHHHHhCcCCCCCeeeccccccC-CCEEEEEECCCCCCCCCHHHHHHHHHHhhcc-c-----CCeEEEeCCCHHHHHHHH
Confidence 56789999999999999999876 7899999999999999999999999988765 2 267999999999999999
Q ss_pred HHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEcCCCCCCcchhhhhhchHHH
Q 020805 88 MAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPE 167 (321)
Q Consensus 88 aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~E 167 (321)
+|+++|++|+||||+.+++.|+++++.|||+|+.++. +++++.+.+.+++++. +++|++||+||.+ +.||+++++|
T Consensus 86 ~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~--~~~~~~~~a~~~~~~~-g~~~~~~~~n~~~-i~g~~t~~~E 161 (310)
T PRK08246 86 AAAALGVPATVFVPETAPPAKVARLRALGAEVVVVGA--EYADALEAAQAFAAET-GALLCHAYDQPEV-LAGAGTLGLE 161 (310)
T ss_pred HHHHcCCCEEEEECCCCcHHHHHHHHHCCCEEEEeCC--CHHHHHHHHHHHHHhc-CCEeCCCCCChhh-hcchHHHHHH
Confidence 9999999999999999999999999999999999986 4678888888888876 8999999999998 6899999999
Q ss_pred HHhhhCCCCCEEEEecCCchhHHHHHHHHHhcCCCcEEEEEecCCCCccC----CCCCCCccc-----ccccCCCC---c
Q 020805 168 LWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLS----GGKPGPHKI-----QGIGAGFV---P 235 (321)
Q Consensus 168 i~~ql~~~~d~vv~p~G~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~----~g~~~~~~~-----~gl~~~~~---~ 235 (321)
|++|+ +.||+||+|+|+||+++|++.+++. .++||+|||++++.+. .+++..... ++++.+.. +
T Consensus 162 i~eq~-~~~D~iv~~vG~GG~~~Gi~~~~~~---~~~vi~ve~~~~~~~~~s~~~g~~~~~~~~~~~~~~l~~~~~~~~~ 237 (310)
T PRK08246 162 IEEQA-PGVDTVLVAVGGGGLIAGIAAWFEG---RARVVAVEPEGAPTLHAALAAGEPVDVPVSGIAADSLGARRVGEIA 237 (310)
T ss_pred HHHhc-CCCCEEEEecCccHHHHHHHHHhcC---CCEEEEEeeCCChHHHHHHHcCCcccCCCCCceeccccCCCccHHH
Confidence 99999 5799999999999999999999974 4899999999997653 344432222 33443332 3
Q ss_pred ccccccccCEEEEeCHHHHHHHHHHHHHhcCCeEecchHHHHHHHHHHHhcCCCCCCEEEEEecCCCCCCHHH
Q 020805 236 GVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVCSQFACITSDSW 308 (321)
Q Consensus 236 ~~~~~~~~d~~~~V~d~e~~~a~~~l~~~~Gi~~~pss~~a~aa~~~~~~~~~~~~~~vv~i~tgg~~~~~~~ 308 (321)
+.+.++.+|+++.|+|+|+++++++|++.+|+++||++|++++++++..... .++++||+|+||||+|++.+
T Consensus 238 ~~~~~~~~~~~~~Vsd~e~~~a~~~l~~~egi~~e~s~aa~lAa~~~~~~~~-~~~~~vv~i~~g~n~d~~~~ 309 (310)
T PRK08246 238 FALARAHVVTSVLVSDEAIIAARRALWEELRLAVEPGAATALAALLSGAYVP-APGERVAVVLCGANTDPATL 309 (310)
T ss_pred HHHHHhcCCeEEEECHHHHHHHHHHHHHHcCceeehHHHHHHHHHHhCCccc-cCCCeEEEEECCCCCChhhc
Confidence 4466788999999999999999999999999999999999999987643221 36789999999999998754
No 39
>cd01562 Thr-dehyd Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen. Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly converted into NH4+. The direct deamination is catalyzed by threonine dehydratase, in which pyridoxal phosphate (PLP) is the prosthetic group. Threonine dehydratase is widely distributed in all three major phylogenetic divisions.
Probab=100.00 E-value=1.1e-59 Score=431.28 Aligned_cols=288 Identities=25% Similarity=0.319 Sum_probs=253.8
Q ss_pred cchhhhhhhhccCCcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHH
Q 020805 6 SNIAKDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGL 85 (321)
Q Consensus 6 ~~~~~~i~~~~~~TPL~~~~~l~~~~g~~v~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~Al 85 (321)
++.++.|.+.+++|||+++++|+...|.+||+|+|++|||||||||++.+++.++.+.|. ..+||++|+||||+|+
T Consensus 5 ~~~~~~i~~~ig~TPl~~~~~l~~~~g~~i~~K~E~~nptgS~Kdr~a~~~l~~~~~~~~----~~~iv~~ssGN~g~al 80 (304)
T cd01562 5 LAAAARIKPVVRRTPLLTSPTLSELLGAEVYLKCENLQKTGSFKIRGAYNKLLSLSEEER----AKGVVAASAGNHAQGV 80 (304)
T ss_pred HHHHHHHhCcCCCCCcccchhhHHHhCCeEEEEeccCCCcCCcHHHhHHHHHHhcCHhhc----CCcEEEECCCHHHHHH
Confidence 356788999999999999999998888999999999999999999999999999887762 2569999999999999
Q ss_pred HHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEcCCCCCCcchhhhhhchH
Q 020805 86 AFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTG 165 (321)
Q Consensus 86 A~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 165 (321)
|++|+++|++|++|+|.+.+..|+++++.+||+|+.++++ ++++.+.+++++++. +++|++|++|+.+ ..|+.+++
T Consensus 81 A~~a~~~G~~~~ivvp~~~~~~k~~~l~~~Ga~vi~~~~~--~~~~~~~a~~la~~~-~~~~~~~~~n~~~-~~g~~~~~ 156 (304)
T cd01562 81 AYAAKLLGIPATIVMPETAPAAKVDATRAYGAEVVLYGED--FDEAEAKARELAEEE-GLTFIHPFDDPDV-IAGQGTIG 156 (304)
T ss_pred HHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEeCCC--HHHHHHHHHHHHHhc-CCEEeCCCCCcch-hccHHHHH
Confidence 9999999999999999999999999999999999999973 788899999999886 7899999999987 68999999
Q ss_pred HHHHhhhCCCCCEEEEecCCchhHHHHHHHHHhcCCCcEEEEEecCCCCccC----CCCCC-----CcccccccCCCC--
Q 020805 166 PELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLS----GGKPG-----PHKIQGIGAGFV-- 234 (321)
Q Consensus 166 ~Ei~~ql~~~~d~vv~p~G~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~----~g~~~-----~~~~~gl~~~~~-- 234 (321)
+||++|++ .||+||+|+|||||++|+++++|..+|.+|||+|+|.+++.+. .+... .....+++....
T Consensus 157 ~Ei~~q~~-~~d~vv~~vGtGgt~~Gi~~~lk~~~~~~kvigv~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~ 235 (304)
T cd01562 157 LEILEQVP-DLDAVFVPVGGGGLIAGIATAVKALSPNTKVIGVEPEGAPAMAQSLAAGKPVTLPEVDTIADGLAVKRPGE 235 (304)
T ss_pred HHHHHhcC-CCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEEEECCCchHHHHHHcCCcccCCCCCcccccccCCCchH
Confidence 99999996 4999999999999999999999999999999999999987653 23221 223345543321
Q ss_pred -cccccccccCEEEEeCHHHHHHHHHHHHHhcCCeEecchHHHHHHHHHHHhcCCCCCCEEEEEecCCCCC
Q 020805 235 -PGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVCSQFACIT 304 (321)
Q Consensus 235 -~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~~Gi~~~pss~~a~aa~~~~~~~~~~~~~~vv~i~tgg~~~ 304 (321)
++.+.++.+|+++.|+|+|+++++++|++++|+++||+||+++++++++.++. ++++||+|+||||.+
T Consensus 236 ~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~eGi~~~pss~~a~a~~~~~~~~~--~~~~vv~i~tGG~~~ 304 (304)
T cd01562 236 LTFEIIRKLVDDVVTVSEDEIAAAMLLLFEREKLVAEPAGALALAALLSGKLDL--KGKKVVVVLSGGNID 304 (304)
T ss_pred HHHHHHHHhCCeEEEECHHHHHHHHHHHHHHcCceEchhHHHHHHHHHhCcccc--CCCeEEEEecCCCCC
Confidence 23355678999999999999999999999999999999999999999987764 688999999999974
No 40
>KOG1250 consensus Threonine/serine dehydratases [Amino acid transport and metabolism]
Probab=100.00 E-value=7.8e-60 Score=422.03 Aligned_cols=292 Identities=23% Similarity=0.245 Sum_probs=264.4
Q ss_pred hhhhhhhhccCCcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHH
Q 020805 8 IAKDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAF 87 (321)
Q Consensus 8 ~~~~i~~~~~~TPL~~~~~l~~~~g~~v~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~AlA~ 87 (321)
.+.++...+-.|||.++-.|++.+|.++|+|+|++||+||||.||+.|++...-++++ ...|+++|.||||+|+|+
T Consensus 56 ~~~~i~~~~~~TPl~~s~~lS~~~g~~vyLK~E~lQpsgSFK~RGa~~~~~kla~~~~----~~gViasSaGNha~a~Ay 131 (457)
T KOG1250|consen 56 AHFKIYPVIVETPLLKSVALSKKAGMPVYLKREDLQPSGSFKIRGAGNALQKLAKQQK----KAGVIASSAGNHAQAAAY 131 (457)
T ss_pred hhhccccceecccchhhhhhhhhcCCceEEEehhcccccceehhhHHHHHHHHHHhhh----cCceEEecCccHHHHHHH
Confidence 4557888999999999999999999999999999999999999999999998776664 267999999999999999
Q ss_pred HHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEcCCCCCCcchhhhhhchHHH
Q 020805 88 MAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPE 167 (321)
Q Consensus 88 aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~E 167 (321)
+|+++|+|++||||..+|..|++.++.+||+|++.+. +++++...+.++++++ ++.|++|||+|+. ++|++|++.|
T Consensus 132 aa~~LgipaTIVmP~~tp~~kiq~~~nlGA~Vil~G~--~~deAk~~a~~lAke~-gl~yI~pfDhP~I-~aGqgTig~E 207 (457)
T KOG1250|consen 132 AARKLGIPATIVMPVATPLMKIQRCRNLGATVILSGE--DWDEAKAFAKRLAKEN-GLTYIPPFDHPDI-WAGQGTIGLE 207 (457)
T ss_pred HHHhcCCceEEEecCCChHHHHHHHhccCCEEEEecc--cHHHHHHHHHHHHHhc-CceecCCCCCchh-hcCcchHHHH
Confidence 9999999999999999999999999999999999995 5899999999999997 9999999999998 7999999999
Q ss_pred HHhhhCCCCCEEEEecCCchhHHHHHHHHHhcCCCcEEEEEecCCCCccC----CCCCC-----CcccccccCCCC---c
Q 020805 168 LWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLS----GGKPG-----PHKIQGIGAGFV---P 235 (321)
Q Consensus 168 i~~ql~~~~d~vv~p~G~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~----~g~~~-----~~~~~gl~~~~~---~ 235 (321)
|++|++..+++|+||||+||+++||+.++|+..|+++|||||++++.++. .|++. .+.++|++...+ +
T Consensus 208 Il~ql~~~~~AI~vpVGGGGLiaGIat~vk~~~p~vkIIGVEt~~a~~f~~sl~~g~~V~lp~i~s~AdglaV~~Vg~~t 287 (457)
T KOG1250|consen 208 ILEQLKEPDGAIVVPVGGGGLIAGIATGVKRVGPHVKIIGVETEGAHSFNASLKAGKPVTLPKITSLADGLAVKTVGENT 287 (457)
T ss_pred HHHhhcCCCCeEEEecCCchhHHHHHHHHHHhCCCCceEEEeecCcHHHHHHHhcCCeeecccccchhcccccchhhHHH
Confidence 99999766669999999999999999999999999999999999998654 45553 234577776544 3
Q ss_pred ccccccccCEEEEeCHHHHHHHHHHHHHhcCCeEecchHHHHHHHHHHHhcCCCCCCEEEEEecCCCCCCHHH
Q 020805 236 GVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVCSQFACITSDSW 308 (321)
Q Consensus 236 ~~~~~~~~d~~~~V~d~e~~~a~~~l~~~~Gi~~~pss~~a~aa~~~~~~~~~~~~~~vv~i~tgg~~~~~~~ 308 (321)
+.+.+..+|+++.|+|+|+..++.++.+.+...+||++|+++++.+.. +....++++||.+++|+|++++.+
T Consensus 288 f~~a~~~~d~vvvV~~~ei~aaI~~l~edek~vvEpAgaaaLaai~~~-~~~~lk~~~vv~ilsG~n~~~~~L 359 (457)
T KOG1250|consen 288 FELAQKLVDRVVVVEDDEIAAAILRLFEDEKMVVEPAGAAALAAIYSG-KLNHLKGKKVVSILSGGNIDFDSL 359 (457)
T ss_pred HHHHHhcCceEEEeccHHHHHHHHHHHHhhhheeccchHHHHHHHHhc-cccccCCceEEeecccCCCCcccc
Confidence 446688999999999999999999999999999999999999999887 544589999999999999999987
No 41
>PRK06352 threonine synthase; Validated
Probab=100.00 E-value=2e-59 Score=435.66 Aligned_cols=291 Identities=22% Similarity=0.279 Sum_probs=248.0
Q ss_pred hhhhhhccCCcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHH
Q 020805 10 KDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMA 89 (321)
Q Consensus 10 ~~i~~~~~~TPL~~~~~l~~~~g~~v~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~AlA~aa 89 (321)
+++++.+|+|||+++++|+...|++||+|+|++|||||||||++.+++.++.++|. ++||++|+||||+|+|++|
T Consensus 20 ~~~~l~~G~TPL~~~~~l~~~~g~~l~~K~E~~nptGS~KdR~a~~~i~~a~~~g~-----~~vV~aSsGN~G~AlA~~a 94 (351)
T PRK06352 20 PMISLAEGNTPLIPLPNLSKELGVTLYGKYEGLNPTGSFKDRGMVMAVAKAKEEGA-----EAVICASTGNTSAAAAAYA 94 (351)
T ss_pred CccccCCCCCCeeEcHhhHHHhCCeEEEEecCCCCccChHHHHHHHHHHHHHHCCC-----CEEEEECCcHHHHHHHHHH
Confidence 35888999999999999998778899999999999999999999999999999886 6799999999999999999
Q ss_pred HHcCCeEEEEecCC-CCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEcCCCCCCcchhhhhhchHHHH
Q 020805 90 AAKQYRLIITMPAS-MSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPEL 168 (321)
Q Consensus 90 ~~~G~~~~ivvp~~-~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~Ei 168 (321)
+++|++|+||||++ .+..|++++++|||+|+.+++ +++++.+.+++++++. +++++++ .||.+ ++||.++++||
T Consensus 95 a~~G~~~~ivvp~~~~~~~k~~~~~a~GA~V~~~~~--~~~~~~~~a~~~~~~~-~~~~~~~-~n~~~-~~G~~t~~~EI 169 (351)
T PRK06352 95 TRAGLKAYIVIPEGKVALGKLAQAVMYGADIISIQG--NFDEALKSVRELAETE-AVTLVNS-VNPYR-LEGQKTAAFEI 169 (351)
T ss_pred HHcCCcEEEEEeCCCCcHHHHHHHHhcCCEEEEECC--CHHHHHHHHHHHHHhc-CcccccC-CCccc-eeeHHHHHHHH
Confidence 99999999999997 589999999999999999996 4678888999988875 6666664 58888 68999999999
Q ss_pred HhhhCCCCCEEEEecCCchhHHHHHHHHHhcCCC-----cEEEEEecCCCCccCCCCCCC---cccccccCCC-Cccccc
Q 020805 169 WKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPN-----IKLYGIEPTESPVLSGGKPGP---HKIQGIGAGF-VPGVLE 239 (321)
Q Consensus 169 ~~ql~~~~d~vv~p~G~Gg~~aGi~~~~k~~~~~-----~~vigv~~~~~~~~~~g~~~~---~~~~gl~~~~-~~~~~~ 239 (321)
++|++..||+||+|+|+||+++|++++||+++|+ ++||+|||++++++..+++.. +...++..+. ..+...
T Consensus 170 ~~Q~~~~~D~vvv~vG~GG~~~Gi~~~lk~~~~~~~~~~~~vi~Vep~g~~~~~~g~~~~~~~~ia~~l~~~~~~~~~~~ 249 (351)
T PRK06352 170 CEQLGSAPDVLAIPVGNAGNISAYWKGFKEWNEAKASGLPRMHGFEAEGAAAIVQGKPIDNPETIATAIRIGNPASWGLA 249 (351)
T ss_pred HHHcCCCCCEEEEECCchHHHHHHHHHHHHHHhcCCCCCCEEEEEeeCCCCHHHhCCCcCCCCcceeEEEeCCCCcHHHH
Confidence 9999767999999999999999999999998877 899999999997665554421 2224443332 112222
Q ss_pred ccccC----EEEEeCHHHHHHHHHHHHHhcCCeEecchHHHHHHHHHHHhcCC-CCCCEEEEEecC-CCCCCHHHHH
Q 020805 240 VNIID----EVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPE-NAGKLIVVCSQF-ACITSDSWLI 310 (321)
Q Consensus 240 ~~~~d----~~~~V~d~e~~~a~~~l~~~~Gi~~~pss~~a~aa~~~~~~~~~-~~~~~vv~i~tg-g~~~~~~~~~ 310 (321)
.+.+| .++.|+|+|+++++++|++++|+++||+||+++++++++++++. .++++||+++|| |+.+.+....
T Consensus 250 ~~~~d~~~g~~~~V~d~e~~~a~r~la~~eGi~vepssaaalAa~~~~~~~~~~~~~~~Vv~v~tg~G~~~~~~~~~ 326 (351)
T PRK06352 250 EAARDESGGYIHSVTDDEIVNAYKKIAAQDGVFIEPGSAASLAGVIQHVANGTIKKGETVVCVFTGNGLKDPDTAMS 326 (351)
T ss_pred HHHHHHhCCEEEEECHHHHHHHHHHHHhhcCceEchhHHHHHHHHHHHHHcCCCCCCCcEEEEeCCCCcCChHHHHh
Confidence 23333 48999999999999999999999999999999999999887543 467899999999 7788776654
No 42
>TIGR02035 D_Ser_am_lyase D-serine ammonia-lyase. This family consists of D-serine ammonia-lyase (EC 4.3.1.18), a pyridoxal-phosphate enzyme that converts D-serine to pyruvate and NH3. This enzyme is also called D-serine dehydratase and D-serine deaminase and was previously designated EC 4.2.1.14. It is homologous to an enzyme that acts on threonine and may itself act weakly on threonine.
Probab=100.00 E-value=5.9e-58 Score=431.90 Aligned_cols=295 Identities=21% Similarity=0.239 Sum_probs=254.9
Q ss_pred hccCCcceecccccCC--------CCceEEEEeCCCCC-CCchhhHHHHHHHHH-----HHHcCCCCCCC----------
Q 020805 15 LIGNTPLVYLNNIVNG--------CVARIAAKLEMMEP-CSSVKDRIGYSMISD-----AEAKGLITPGE---------- 70 (321)
Q Consensus 15 ~~~~TPL~~~~~l~~~--------~g~~v~~K~E~~~p-tGS~K~R~a~~~l~~-----a~~~g~~~~g~---------- 70 (321)
++++|||++++++++. .+.+||+|+|++|| |||||||++.+++.. +.+.|.+.++.
T Consensus 67 ~~~~TPL~~~~~ls~~~~~~~~~~~~~~v~lKlE~~nP~tGSfKdRGA~~~i~~~~~~~A~~~G~l~~~~~~~~l~e~~~ 146 (431)
T TIGR02035 67 GIIESPLVEIFNMQKELEKKYQQEIPGRLLLKMDSHLPISGSIKARGGIYEVLKHAEELALEAGLLKLDDDYSILAEKKF 146 (431)
T ss_pred CccCCCccchHHHHHHhhhcccCCcCceEEEEecccCCccCCcHHHHHHHHHHHhhHHHHHHcCCCCcCcchhhhcchhh
Confidence 8999999999999863 35799999999999 999999999998864 67889887764
Q ss_pred ------eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCC
Q 020805 71 ------SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPN 144 (321)
Q Consensus 71 ------~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~ 144 (321)
.+||++|+||||+|+|++|+.+|++|+||||+++++.|++.++.|||+|+.+++ +++++.+.+++++++.++
T Consensus 147 ~~~~~~~~Vv~aSsGN~G~slA~~Aa~lG~~~~IvmP~~a~~~K~~~ir~~GAeVv~~~~--~~~~a~~~A~~la~~~~~ 224 (431)
T TIGR02035 147 KDFFSRYSIAVGSTGNLGLSIGIISAALGFQVTVHMSADAKQWKKDKLRSKGVTVVEYES--DYGVAVEEGRKNADADPM 224 (431)
T ss_pred hhcccCceEEEECccHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhcCC
Confidence 479999999999999999999999999999999999999999999999999996 578999999999988766
Q ss_pred eEEcCCCCCCcchhhhhhchHHHHHhhhCC--------CCCEEEEecCCchhHHHHHHHHHhc-CCCcEEEEEecCCCCc
Q 020805 145 AYMLQQFENPANPKIHYETTGPELWKGSGG--------RIDALVSGIGTGGTITGAGKFLKEK-NPNIKLYGIEPTESPV 215 (321)
Q Consensus 145 ~~~~~~~~~~~~~~~g~~~~~~Ei~~ql~~--------~~d~vv~p~G~Gg~~aGi~~~~k~~-~~~~~vigv~~~~~~~ 215 (321)
.||+++. |+.+.++||+|++.||++|+++ .||+|++|+|+||+++|+++++|+. +|+++||+|||+++++
T Consensus 225 ~~~~d~~-n~~n~~aG~~T~g~EI~eQl~~~~~~~d~~~pd~V~vp~G~GGli~Gia~~lK~~~~~~vkvi~VEp~~s~~ 303 (431)
T TIGR02035 225 CYFVDDE-NSRNLFLGYAVAASRLKKQFDKKGIVVDKEHPLFVYLPCGVGGGPGGVAFGLKLAFGDNVHCFFAEPTHSPC 303 (431)
T ss_pred eEECCCC-CcccHHhhHHHHHHHHHHhhhccccccccCCCCEEEEEeCcCHHHHHHHHHHHHhcCCCCEEEEEeeCCCHH
Confidence 7888874 5556689999999999999952 4779999999999999999999997 8999999999999975
Q ss_pred cC----CCCC-----------CCcccccccCCCCc---ccccccccCEEEEeCHHHHHHHHHHHHHhcCCeEecchHHHH
Q 020805 216 LS----GGKP-----------GPHKIQGIGAGFVP---GVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAA 277 (321)
Q Consensus 216 ~~----~g~~-----------~~~~~~gl~~~~~~---~~~~~~~~d~~~~V~d~e~~~a~~~l~~~~Gi~~~pss~~a~ 277 (321)
+. .+.. ..+.++||+.+..+ +.+.++.+|++++|+|+|+++++++|++++|+++||+||+++
T Consensus 304 ~~~s~~~g~~~~~~~~~~g~~~~T~AdGlav~~p~~~~~~~~~~~vd~vv~VsD~ei~~a~~~L~~~egi~vEpSsaa~l 383 (431)
T TIGR02035 304 MLLGVYTGLHEKISVQDIGIDNITAADGLAVGRPSGFVGRLMEPLLSGIYTVDDYTLYDLLRILAESEGKRLEPSALAGM 383 (431)
T ss_pred HHHHHhcCCCccccccccCCCCCceeccccCCCcchhHHHHHHHhCCeEEEECHHHHHHHHHHHHHHcCCeEcHHHHHHH
Confidence 42 2321 23456788766532 223456899999999999999999999999999999999999
Q ss_pred HHHHHHHhcC-----------C-CCCCEEEEEecCCCCCCHHHHHhh
Q 020805 278 AAAIEIAKRP-----------E-NAGKLIVVCSQFACITSDSWLIAI 312 (321)
Q Consensus 278 aa~~~~~~~~-----------~-~~~~~vv~i~tgg~~~~~~~~~~~ 312 (321)
+++.++++.. . .++.+.++..|||.+.+++-++.|
T Consensus 384 aa~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~tg~~~~p~~~~~~~ 430 (431)
T TIGR02035 384 EGPVRLLKYEDSYRYIEGRIGKNLNNATHVVWATGGGMVPEEEMEAY 430 (431)
T ss_pred HHHHHHHhhhhhHHHHcCccccccCCCeEEEEecCCCCCCHHHHHhh
Confidence 9999887652 0 156799999999999999988776
No 43
>PRK07591 threonine synthase; Validated
Probab=100.00 E-value=3.9e-58 Score=436.10 Aligned_cols=292 Identities=20% Similarity=0.212 Sum_probs=253.8
Q ss_pred hhhhhccCCcceecccccCCCC-ceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHH
Q 020805 11 DVTELIGNTPLVYLNNIVNGCV-ARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMA 89 (321)
Q Consensus 11 ~i~~~~~~TPL~~~~~l~~~~g-~~v~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~AlA~aa 89 (321)
++++.+|+|||+++++|++.+| .+||+|+|++|||||||||++.+++..|.+.|. ++|+++|+||||+|+|++|
T Consensus 82 ~v~l~eG~TPLv~~~~l~~~lG~~~l~~K~E~~nPtGSfKdRga~~~v~~A~~~g~-----~~vv~aSsGN~g~alA~~a 156 (421)
T PRK07591 82 PVDLGPGFTPLVKADRLARELGLKNLYIKDDSVNPTHSFKDRVVSVALTAARELGF-----TTVACASTGNLANSVAAHA 156 (421)
T ss_pred CCcCCCCCCcceEhHHHHHHhCCCcEEEEeCCCCCccChHHHHHHHHHHHHHHcCC-----CEEEEeCCCHHHHHHHHHH
Confidence 4788999999999999998888 499999999999999999999999999999886 6799999999999999999
Q ss_pred HHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEcCCCCCCcchhhhhhchHHHHH
Q 020805 90 AAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELW 169 (321)
Q Consensus 90 ~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~Ei~ 169 (321)
+++|++|+||||+++++.|+.+++.|||+|+.+++ +++++.+.+++++++.+++++++++.+|+. ++|++|+++||+
T Consensus 157 a~~Gl~~~I~vP~~~~~~k~~~~~~~GA~Vi~v~g--~~d~a~~~a~~~~~~~~~~~~~n~~~~p~~-ieG~~Tia~Ei~ 233 (421)
T PRK07591 157 ARAGLDSCVFIPADLEAGKIVGTLVYGPTLVAVDG--NYDDVNRLCSELANEHEGWGFVNINLRPYY-AEGSKTLGYEVA 233 (421)
T ss_pred HHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhcCCEEEecCCCCccc-ccchHHHHHHHH
Confidence 99999999999999999999999999999999996 468889999999887667899998888887 789999999999
Q ss_pred hhhCCC-CCEEEEecCCchhHHHHHHHHHhc-------CCCcEEEEEecCCCCccC----CCCC------CCcccccccC
Q 020805 170 KGSGGR-IDALVSGIGTGGTITGAGKFLKEK-------NPNIKLYGIEPTESPVLS----GGKP------GPHKIQGIGA 231 (321)
Q Consensus 170 ~ql~~~-~d~vv~p~G~Gg~~aGi~~~~k~~-------~~~~~vigv~~~~~~~~~----~g~~------~~~~~~gl~~ 231 (321)
+|++++ ||+||+|+|+||+++|++++||++ .+.+|||+|||++++++. .+.. ..+..+++..
T Consensus 234 eQl~~~~pD~iv~pvG~Gg~~~Gv~~g~kel~~~g~i~~~~prii~Vq~~g~~~~~~~~~~g~~~~~~~~~~tia~~l~~ 313 (421)
T PRK07591 234 EQLGWRLPDQVVAPLASGSLLTKIDKGFQELIKVGLVEDKPVRVFGAQAEGCSPIAQAFKEGRDVVKPVKPNTIAKSLAI 313 (421)
T ss_pred HHcCCCCCCEEEEeCCchHHHHHHHHHHHHHHhcCCccCCCceEEEEecCCCCHHHHHHHcCCCcccCCCCCchhhheec
Confidence 999755 999999999999999999999997 578999999999976543 2221 1123344433
Q ss_pred CCCc-----ccccccccCEEEEeCHHHHHHHHHHHHHhcCCeEecchHHHHHHHHHHHhcCC-CCCCEEEEEecC-CCCC
Q 020805 232 GFVP-----GVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPE-NAGKLIVVCSQF-ACIT 304 (321)
Q Consensus 232 ~~~~-----~~~~~~~~d~~~~V~d~e~~~a~~~l~~~~Gi~~~pss~~a~aa~~~~~~~~~-~~~~~vv~i~tg-g~~~ 304 (321)
+... ..+.++..+.++.|+|+|++++++.|++.+|+++||+||+++++++++.+++. .++++||+++|| |+.+
T Consensus 314 ~~p~~~~~~~~~i~~~~g~~v~Vsd~ei~~a~~~la~~eGi~~epssaaalAal~~l~~~g~i~~~~~VV~i~tG~G~kd 393 (421)
T PRK07591 314 GNPADGPYALDIARRTGGAIEDVTDEEIIEGIKLLARTEGIFTETAGGVTVAVLKKLVEAGKIDPDEETVVYITGNGLKT 393 (421)
T ss_pred CCCCCcHHHHHHHHHhCCEEEEECHHHHHHHHHHHHhcCCeeecchHHHHHHHHHHHHHhCCCCCCCeEEEEeCCCccCC
Confidence 3211 11234567789999999999999999999999999999999999999988765 478899999999 8888
Q ss_pred CHHHHH
Q 020805 305 SDSWLI 310 (321)
Q Consensus 305 ~~~~~~ 310 (321)
.+.+.+
T Consensus 394 ~~~~~~ 399 (421)
T PRK07591 394 LEAVAG 399 (421)
T ss_pred HHHHHH
Confidence 887764
No 44
>cd06447 D-Ser-dehyd D-Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- or D-serine to pyruvate and ammonia. D-serine dehydratase serves as a detoxifying enzyme in most E. coli strains where D-serine is a competitive antagonist of beta-alanine in the biosynthetic pathway to pentothenate and coenzyme A. D-serine dehydratase is different from other pyridoxal-5'-phosphate-dependent enzymes in that it catalyzes alpha, beta-elimination reactions on amino acids.
Probab=100.00 E-value=3.3e-58 Score=430.31 Aligned_cols=287 Identities=21% Similarity=0.258 Sum_probs=246.3
Q ss_pred ccCCcceecccccCCCC--------ceEEEEeCCCCC-CCchhhHHHHHHHHH-----HHHcCCCCCCC-----------
Q 020805 16 IGNTPLVYLNNIVNGCV--------ARIAAKLEMMEP-CSSVKDRIGYSMISD-----AEAKGLITPGE----------- 70 (321)
Q Consensus 16 ~~~TPL~~~~~l~~~~g--------~~v~~K~E~~~p-tGS~K~R~a~~~l~~-----a~~~g~~~~g~----------- 70 (321)
+++|||+++++|+..+| .+||+|+|++|| |||||||++.+++.. +.++|.+.||+
T Consensus 50 ~~~TPLv~~~~ls~~~g~~~~~~~~~~v~~K~E~~nP~tGSfKdRgA~~~i~~l~~~~a~~~G~l~pg~~~~~~~~~~~~ 129 (404)
T cd06447 50 IIESPLLPIPRMKQALEKLYHQPIKGRLLLKADSHLPISGSIKARGGIYEVLKHAEKLALEHGLLTLEDDYSKLASEKFR 129 (404)
T ss_pred ccCCCceehHHHHHHhccccccCcCceEEEEecCCCCCCCChHHHHHHHHHHHHhHHHHHHhCCCCcccchhhhhhhhhh
Confidence 99999999999987554 799999999999 999999999999864 77889888875
Q ss_pred -----eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCe
Q 020805 71 -----SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNA 145 (321)
Q Consensus 71 -----~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~ 145 (321)
.+||++|+||||+|+|++|+.+|++|+||||+++++.|++.+++|||+|+.+++ +++++.+.+++++++.+++
T Consensus 130 ~~~~~~~VV~aSsGN~G~alA~~a~~~G~~~~IvvP~~~~~~K~~~ira~GAeVv~v~~--~~~~a~~~a~~la~~~~~~ 207 (404)
T cd06447 130 KLFSQYSIAVGSTGNLGLSIGIMAAALGFKVTVHMSADAKQWKKDKLRSKGVTVVEYET--DYSKAVEEGRKQAAADPMC 207 (404)
T ss_pred hcccCCEEEEECccHHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHCCCEEEEECC--CHHHHHHHHHHHHHHCCCe
Confidence 489999999999999999999999999999999999999999999999999985 5788999999999887678
Q ss_pred EEcCCCCCCcchhhhhhchHHHHHhhhCC---C-----CCEEEEecCCchhHHHHHHHHHhc-CCCcEEEEEecCCCCcc
Q 020805 146 YMLQQFENPANPKIHYETTGPELWKGSGG---R-----IDALVSGIGTGGTITGAGKFLKEK-NPNIKLYGIEPTESPVL 216 (321)
Q Consensus 146 ~~~~~~~~~~~~~~g~~~~~~Ei~~ql~~---~-----~d~vv~p~G~Gg~~aGi~~~~k~~-~~~~~vigv~~~~~~~~ 216 (321)
+|++++++++. ++||+|+|+||++|+++ + ||+||+|+|+||+++|++++||+. .|+++||+|||++++.+
T Consensus 208 ~~v~~~n~~~~-iaG~~T~g~EI~eQl~~~~~~vD~~~Pd~VvvpvG~GGli~GIa~~lK~~~~p~~kVigVeP~~ap~~ 286 (404)
T cd06447 208 YFVDDENSRDL-FLGYAVAASRLKAQLAELGIKVDAEHPLFVYLPCGVGGAPGGVAFGLKLIFGDNVHCFFAEPTHSPCM 286 (404)
T ss_pred EeCCCCCchhH-HhhHHHHHHHHHHHhhhccCccccCCCCEEEEecCccHHHHHHHHHHHHhcCCCCEEEEEccCCChHH
Confidence 89999755554 89999999999999952 3 558999999999999999999997 78999999999998755
Q ss_pred C----CCCC-----------CCcccccccCCCC---cccccccccCEEEEeCHHHHHHHHHHHHHhcCCeEecchHHHHH
Q 020805 217 S----GGKP-----------GPHKIQGIGAGFV---PGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAA 278 (321)
Q Consensus 217 ~----~g~~-----------~~~~~~gl~~~~~---~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~~Gi~~~pss~~a~a 278 (321)
. .+.. ..+.++||+.+.. ++.+.++.+|+++.|+|+|+++++++|++.+|+++||+||++++
T Consensus 287 ~~s~~ag~~~~~~~~~~g~~~~TiadGl~~~~p~~~~~~~~~~~vd~~v~Vsd~ei~~a~r~La~~~gi~vepSgAa~lA 366 (404)
T cd06447 287 LLGMATGLHDKISVQDIGIDNRTAADGLAVGRPSGLVGKLMEPLLSGIYTVEDDELYRLLAMLKDSENIEVEPSAAAGFT 366 (404)
T ss_pred HHHHHcCCCccccccccCCCccchhhhhcCCCcchhHHHHHHHhCCcEEEECHHHHHHHHHHHHHHcCcEEeHHHHHHHH
Confidence 2 2221 2245567766542 23344678999999999999999999999999999999999999
Q ss_pred HHHHHHhcCC----------CCCCEEEEEecCCCCCC
Q 020805 279 AAIEIAKRPE----------NAGKLIVVCSQFACITS 305 (321)
Q Consensus 279 a~~~~~~~~~----------~~~~~vv~i~tgg~~~~ 305 (321)
+++++.++.+ .+..+.++..|||.+.+
T Consensus 367 Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (404)
T cd06447 367 GPAQVLSEAEGKRYVRLGYRMENATHIVWATGGSMVP 403 (404)
T ss_pred HHHHHHHhhhHHHhcCccccccCceEEEEccCCCCCC
Confidence 9999877541 35567888899998765
No 45
>PRK07409 threonine synthase; Validated
Probab=100.00 E-value=5.6e-58 Score=427.23 Aligned_cols=293 Identities=23% Similarity=0.262 Sum_probs=252.4
Q ss_pred hhhhhhccCCcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHH
Q 020805 10 KDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMA 89 (321)
Q Consensus 10 ~~i~~~~~~TPL~~~~~l~~~~g~~v~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~AlA~aa 89 (321)
+++++++|+|||+++++|+...|++||+|+|++|||||||||++.+++..+.++|. ++||++|+||||+|+|++|
T Consensus 23 ~~~~l~~g~TPl~~~~~l~~~~g~~i~~K~E~~nptGSfKdR~a~~~l~~a~~~g~-----~~iv~aSsGN~g~alA~~a 97 (353)
T PRK07409 23 PVVTLGEGNTPLIPAPNLSELLGVEVYVKYEGLNPTGSFKDRGMTMAVTKAKEEGA-----KAVICASTGNTSASAAAYA 97 (353)
T ss_pred CcccCCCCCCCEEEchhhHHHhCCeEEEEecCCCCccchHHHHHHHHHHHHHHCCC-----CEEEEECCcHHHHHHHHHH
Confidence 34788999999999999998778899999999999999999999999999998886 6799999999999999999
Q ss_pred HHcCCeEEEEecCC-CCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEcCCCCCCcchhhhhhchHHHH
Q 020805 90 AAKQYRLIITMPAS-MSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPEL 168 (321)
Q Consensus 90 ~~~G~~~~ivvp~~-~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~Ei 168 (321)
+.+|++|+||||++ .+..|++.++.|||+|+.+++ +++++.+.++++++++ +++++++ .||.+ +.||.|+++||
T Consensus 98 ~~~G~~~~ivvP~~~~~~~k~~~~~~~GA~Vi~~~~--~~~~~~~~a~~l~~~~-~~~~~~~-~n~~~-~~g~~t~~~EI 172 (353)
T PRK07409 98 ARAGLKAFVLIPEGKIALGKLAQAVMYGAEIIQIDG--NFDDALEIVRELAEKY-PVTLVNS-VNPYR-IEGQKTAAFEI 172 (353)
T ss_pred HHcCCCEEEEEcCCCCchhhHHHHHhcCCEEEEECC--CHHHHHHHHHHHHHhc-CceecCC-CCchh-hhhHHHHHHHH
Confidence 99999999999997 689999999999999999996 4788899999988876 5777775 48888 68999999999
Q ss_pred HhhhCCCCCEEEEecCCchhHHHHHHHHHhcCC------CcEEEEEecCCCCccCCCCCC---CcccccccCCCCcccc-
Q 020805 169 WKGSGGRIDALVSGIGTGGTITGAGKFLKEKNP------NIKLYGIEPTESPVLSGGKPG---PHKIQGIGAGFVPGVL- 238 (321)
Q Consensus 169 ~~ql~~~~d~vv~p~G~Gg~~aGi~~~~k~~~~------~~~vigv~~~~~~~~~~g~~~---~~~~~gl~~~~~~~~~- 238 (321)
++|++..||+||+|+|+||+++|++.++|+..+ .++||+|||.+++++..+++. .+..++++.+. |...
T Consensus 173 ~~q~~~~~d~iv~~vG~GG~~~Gi~~g~~~~~~~~~~~~~~kvigVep~g~~~~~~g~~~~~~~ti~~~l~~~~-~~~~~ 251 (353)
T PRK07409 173 VDALGDAPDYHCIPVGNAGNITAYWKGYKEYHQDGKSTKLPRMMGFQAAGAAPIVRGEPVKNPETIATAIRIGN-PASWD 251 (353)
T ss_pred HHHhCCCCCEEEEeCCChHHHHHHHHHHHHHHHcCCccCCCeEEEEecCCCChHhhCCcCCCCcceeeeeecCC-CCCHH
Confidence 999976799999999999999999999998743 489999999998776554432 22335554332 2222
Q ss_pred -----cccccCEEEEeCHHHHHHHHHHHHHhcCCeEecchHHHHHHHHHHHhcCC-CCCCEEEEEecC-CCCCCHHHHHh
Q 020805 239 -----EVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPE-NAGKLIVVCSQF-ACITSDSWLIA 311 (321)
Q Consensus 239 -----~~~~~d~~~~V~d~e~~~a~~~l~~~~Gi~~~pss~~a~aa~~~~~~~~~-~~~~~vv~i~tg-g~~~~~~~~~~ 311 (321)
.++..++++.|+|+|+++++++|++++|+++||+||+++++++++.+++. .++++||+++|| |+.+++.+.+.
T Consensus 252 ~~~~~~~~~~~~~v~Vsd~e~~~a~~~l~~~egi~v~pssa~alaa~~~~~~~~~~~~~~~VV~i~tg~g~k~~~~~~~~ 331 (353)
T PRK07409 252 KAVAARDESGGLIDAVTDEEILEAYRLLARKEGVFCEPASAASVAGLLKAIRAGKIPEGSTVVCTLTGNGLKDPDTAIKQ 331 (353)
T ss_pred HHHHHHHHhCCEEEEECHHHHHHHHHHHHHhCCceeCchHHHHHHHHHHHHHcCCCCCCCcEEEEecCccccchHHHHhh
Confidence 23456789999999999999999999999999999999999999887643 468899999999 89999988876
Q ss_pred hc
Q 020805 312 IT 313 (321)
Q Consensus 312 ~~ 313 (321)
+.
T Consensus 332 ~~ 333 (353)
T PRK07409 332 AD 333 (353)
T ss_pred cc
Confidence 65
No 46
>PRK08197 threonine synthase; Validated
Probab=100.00 E-value=8e-58 Score=431.62 Aligned_cols=291 Identities=25% Similarity=0.211 Sum_probs=249.7
Q ss_pred hhhhhccCCcceecccccCCCC-ceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHH
Q 020805 11 DVTELIGNTPLVYLNNIVNGCV-ARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMA 89 (321)
Q Consensus 11 ~i~~~~~~TPL~~~~~l~~~~g-~~v~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~AlA~aa 89 (321)
.+++++|+|||+++++|++.+| .+||+|+|++|||||||||++.+++.++.++|. ++|+++|+||||+|+|++|
T Consensus 72 ~vslgeG~TPL~~~~~l~~~~G~~~l~~K~E~~nPtGSfKdRga~~~i~~a~~~g~-----~~vv~aSsGN~g~alA~~a 146 (394)
T PRK08197 72 IVSLGEGMTPLLPLPRLGKALGIGRLWVKDEGLNPTGSFKARGLAVGVSRAKELGV-----KHLAMPTNGNAGAAWAAYA 146 (394)
T ss_pred CCccCcCCCCceEhHHHHHHhCCCcEEEEeCCCCCCcCcHHhHHHHHHHHHHHcCC-----CEEEEeCCcHHHHHHHHHH
Confidence 3788999999999999998777 599999999999999999999999999999886 7899999999999999999
Q ss_pred HHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEcCCCCCCcchhhhhhchHHHHH
Q 020805 90 AAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELW 169 (321)
Q Consensus 90 ~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~Ei~ 169 (321)
+++|++|+||||+++++.|+++++.|||+|+.+++ +++++.+.+++.+++. ++|+++++.||.+ ++|++|+++||+
T Consensus 147 a~~G~~~~v~vp~~~~~~k~~~~~~~GA~Vi~v~~--~~~~~~~~a~~~~~~~-g~~~~~~~~np~~-ieG~~t~a~Ei~ 222 (394)
T PRK08197 147 ARAGIRATIFMPADAPEITRLECALAGAELYLVDG--LISDAGKIVAEAVAEY-GWFDVSTLKEPYR-IEGKKTMGLELA 222 (394)
T ss_pred HHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhc-CcccccCCCCccc-hhcHHHHHHHHH
Confidence 99999999999999999999999999999999996 4678888888888876 7999999999998 789999999999
Q ss_pred hhhCCC-CCEEEEecCCchhHHHHHHHHHhc-------CCCcEEEEEecCCCCccC----CCCCC-------Cccccccc
Q 020805 170 KGSGGR-IDALVSGIGTGGTITGAGKFLKEK-------NPNIKLYGIEPTESPVLS----GGKPG-------PHKIQGIG 230 (321)
Q Consensus 170 ~ql~~~-~d~vv~p~G~Gg~~aGi~~~~k~~-------~~~~~vigv~~~~~~~~~----~g~~~-------~~~~~gl~ 230 (321)
+|++++ ||+||+|+|+||+++|++++||++ .+.+++|+||+++++++. .+... .+..+|+.
T Consensus 223 eQl~~~~pD~vvvpvG~Gg~~~Gi~~~~k~~~~~g~~~~~~p~ii~Vq~~g~~~l~~~~~~g~~~~~~~~~~~tia~gl~ 302 (394)
T PRK08197 223 EQLGWRLPDVILYPTGGGVGLIGIWKAFDELEALGWIGGKRPRLVAVQAEGCAPIVKAWEEGKEESEFWEDAHTVAFGIR 302 (394)
T ss_pred HHcCCCCCCEEEEeCCChHHHHHHHHHHHHHHHcCCcCCCCCeEEEEEeCCCCHHHHHHHcCCCccccCCCCCceehhhh
Confidence 999754 999999999999999999999987 388999999999997653 22211 12234443
Q ss_pred CCCCccc-----ccccccCEEEEeCHHHHHHHHHHHHHhcCCeEecchHHHHHHHHHHHhcCC-CCCCEEEEEecCCCCC
Q 020805 231 AGFVPGV-----LEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPE-NAGKLIVVCSQFACIT 304 (321)
Q Consensus 231 ~~~~~~~-----~~~~~~d~~~~V~d~e~~~a~~~l~~~~Gi~~~pss~~a~aa~~~~~~~~~-~~~~~vv~i~tgg~~~ 304 (321)
.+..... ..++..+.++.|+|+|+++++++|++++|+++||+||+++++++++.+++. .++++||+++||+++.
T Consensus 303 ~~~~~~~~~~~~~~~~~~g~~v~V~d~e~~~a~~~la~~eGi~vepssaaala~~~~l~~~~~~~~~~~Vv~v~tG~g~k 382 (394)
T PRK08197 303 VPKALGDFLVLDAVRETGGCAIAVSDDAILAAQRELAREEGLFACPEGAATFAAARQLRESGWLKGDERVVLFNTGSGLK 382 (394)
T ss_pred CCCCCCHHHHHHHHHHhCCEEEEeCHHHHHHHHHHHHhcCCceECchHHHHHHHHHHHHHcCCcCCCCcEEEEeCCCCcC
Confidence 3221111 123566789999999999999999999999999999999999999988764 4688999999998766
Q ss_pred CHHHHH
Q 020805 305 SDSWLI 310 (321)
Q Consensus 305 ~~~~~~ 310 (321)
..+.+.
T Consensus 383 ~~~~~~ 388 (394)
T PRK08197 383 YPDTVP 388 (394)
T ss_pred chhhhh
Confidence 544443
No 47
>PRK06721 threonine synthase; Reviewed
Probab=100.00 E-value=4.9e-57 Score=420.06 Aligned_cols=289 Identities=24% Similarity=0.292 Sum_probs=244.3
Q ss_pred hhhhhhccCCcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHH
Q 020805 10 KDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMA 89 (321)
Q Consensus 10 ~~i~~~~~~TPL~~~~~l~~~~g~~v~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~AlA~aa 89 (321)
.++++.+|+|||+++++|++..|.+||+|+|++|||||||||++.+++.++.++|. ++||++|+||||+|+|++|
T Consensus 20 ~~~~l~~G~TPl~~l~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~i~~a~~~g~-----~~vV~aSsGN~G~alA~~a 94 (352)
T PRK06721 20 PDVSLMEGNTPLIPLLNISKQLGIQLYGKYEGANPTGSFKDRGMVMAVAKAKEEGS-----EAIICASTGNTSASAAAYA 94 (352)
T ss_pred CccccCcCCCCeeEchhhHHHhCCeEEEEecCCCCccchHHHHHHHHHHHHHHCCC-----CEEEEECCcHHHHHHHHHH
Confidence 35778899999999999998778899999999999999999999999999999886 6799999999999999999
Q ss_pred HHcCCeEEEEecCCC-CHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEcCCCCCCcchhhhhhchHHHH
Q 020805 90 AAKQYRLIITMPASM-SLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPEL 168 (321)
Q Consensus 90 ~~~G~~~~ivvp~~~-~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~Ei 168 (321)
+++|++|+||||+.. ++.|+++++.+||+|+.+++ +++++.+.+++++++. ++++++ +.||.+ ..||.++++||
T Consensus 95 a~~G~~~~vvvp~~~~~~~k~~~~~~~GA~V~~~~~--~~~~~~~~a~~~~~~~-~~~~~~-~~n~~~-~~G~~t~~~Ei 169 (352)
T PRK06721 95 ARLGMKCIIVIPEGKIAHGKLAQAVAYGAEIISIEG--NFDDALKAVRNIAAEE-PITLVN-SVNPYR-IEGQKTAAFEI 169 (352)
T ss_pred HHCCCcEEEEECCCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhC-Cceecc-CCCchh-hhhhhhHHHHH
Confidence 999999999999974 88999999999999999995 4678888899988876 666665 458877 68999999999
Q ss_pred HhhhCCCCCEEEEecCCchhHHHH----HHHHHhcC-CCcEEEEEecCCCCccCCCCCC---CcccccccCCCCccc---
Q 020805 169 WKGSGGRIDALVSGIGTGGTITGA----GKFLKEKN-PNIKLYGIEPTESPVLSGGKPG---PHKIQGIGAGFVPGV--- 237 (321)
Q Consensus 169 ~~ql~~~~d~vv~p~G~Gg~~aGi----~~~~k~~~-~~~~vigv~~~~~~~~~~g~~~---~~~~~gl~~~~~~~~--- 237 (321)
++|+++.||+||+|+|+||+++|+ ++++|..+ |.++||+|||++++.+..+... .+..++++.+. |..
T Consensus 170 ~eq~~~~~D~ivv~vG~GG~l~G~~~G~~~~lk~~~~~~~~vigVep~~~~~~~~g~~~~~~~tia~~l~~~~-~~~~~~ 248 (352)
T PRK06721 170 CDQLQRAPDVLAIPVGNAGNITAYWKGFCEYEKEKGYKKPRIHGFEAEGAAAIVKGHVIDEPETIATAIRIGN-PASWSY 248 (352)
T ss_pred HHHhCCCCCEEEEeCCchHHHHHHHHHHHHHHHhcCCCCCeEEEEecCCCChHhhCCcCCCCCceeeccccCC-CCCHHH
Confidence 999976799999999999999975 45556564 8999999999999877654431 22335555432 211
Q ss_pred ---ccccccCEEEEeCHHHHHHHHHHHHHhcCCeEecchHHHHHHHHHHHhcCC-CCCCEEEEEecCCCCCC-HHHH
Q 020805 238 ---LEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPE-NAGKLIVVCSQFACITS-DSWL 309 (321)
Q Consensus 238 ---~~~~~~d~~~~V~d~e~~~a~~~l~~~~Gi~~~pss~~a~aa~~~~~~~~~-~~~~~vv~i~tgg~~~~-~~~~ 309 (321)
.....+|+++.|+|+|+++++++|++++|+++||++|+++++++++.+++. .++++||+++||++... +...
T Consensus 249 ~~~~~~~~~~~~~~V~d~e~~~a~~~la~~eGi~vepssgaalaa~~~~~~~~~~~~~~~Vv~v~~g~g~k~~~~~~ 325 (352)
T PRK06721 249 AVEAAEQSHGEIDMVSDEEILHAYRLLAKSEGVFAEPGSNASLAGVMKHVQSGKIKKGETVVAVLTGNGLKDPDIAI 325 (352)
T ss_pred HHHHHHhcCCEEEEECHHHHHHHHHHHHHhcCcccCchHHHHHHHHHHHHHcCCCCCCCeEEEEeCCCCcCchHHHh
Confidence 124578999999999999999999999999999999999999999887644 56789999999976444 4443
No 48
>PRK06381 threonine synthase; Validated
Probab=100.00 E-value=2.5e-57 Score=418.04 Aligned_cols=281 Identities=22% Similarity=0.258 Sum_probs=238.7
Q ss_pred hhhccCCcceecccccCCCC-ceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHH
Q 020805 13 TELIGNTPLVYLNNIVNGCV-ARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAA 91 (321)
Q Consensus 13 ~~~~~~TPL~~~~~l~~~~g-~~v~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~AlA~aa~~ 91 (321)
...+|+|||+++++|++.+| .+||+|+|++|||||||||++.+++.++.++|. ++|+++|+||||+|+|++|+.
T Consensus 10 ~~~~g~TPL~~~~~l~~~~G~~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~-----~~lv~aSsGN~g~alA~~aa~ 84 (319)
T PRK06381 10 EKPPGGTPLLRARKLEEELGLRKIYLKFEGANPTGTQKDRIAEAHVRRAMRLGY-----SGITVGTCGNYGASIAYFARL 84 (319)
T ss_pred cccCCCCceeEhHhhHHhcCCceEEEEecCCCCccCcHHHHHHHHHHHHHHcCC-----CEEEEeCCcHHHHHHHHHHHH
Confidence 34689999999999998887 599999999999999999999999999999986 679999999999999999999
Q ss_pred cCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEcCCCC-CCcchhhhhhchHHHHHh
Q 020805 92 KQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFE-NPANPKIHYETTGPELWK 170 (321)
Q Consensus 92 ~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~Ei~~ 170 (321)
+|++|+||||..++..|+++++.|||+|+.+++ +++++.+.+++++++. ++|++++++ |+...+.||.++++||++
T Consensus 85 ~G~~~~ivvp~~~~~~~~~~l~~~GA~V~~~~~--~~~~~~~~a~~~~~~~-~~~~~~~~~~n~~~~~~G~~t~a~Ei~~ 161 (319)
T PRK06381 85 YGLKAVIFIPRSYSNSRVKEMEKYGAEIIYVDG--KYEEAVERSRKFAKEN-GIYDANPGSVNSVVDIEAYSAIAYEIYE 161 (319)
T ss_pred cCCcEEEEECCCCCHHHHHHHHHcCCEEEEcCC--CHHHHHHHHHHHHHHc-CcEecCCCCCCcchHhhhHHHHHHHHHH
Confidence 999999999999999999999999999999996 3678888898888775 788998986 663237899999999999
Q ss_pred hhCCCCCEEEEecCCchhHHHHHHHHHhc------CCCcEEEEEecCCCCccC----CCCCCC-----ccccc--ccCCC
Q 020805 171 GSGGRIDALVSGIGTGGTITGAGKFLKEK------NPNIKLYGIEPTESPVLS----GGKPGP-----HKIQG--IGAGF 233 (321)
Q Consensus 171 ql~~~~d~vv~p~G~Gg~~aGi~~~~k~~------~~~~~vigv~~~~~~~~~----~g~~~~-----~~~~g--l~~~~ 233 (321)
|++..||+||+|+|+||+++|++++||+. +|.++||+||+.+++++. .+.... ..+.. +..+.
T Consensus 162 ql~~~~D~vv~~vGtGgt~~Gl~~~~~~~~~~g~~~~~~~vigVe~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~~~~ 241 (319)
T PRK06381 162 ALGDVPDAVAVPVGNGTTLAGIYHGFRRLYDRGKTSRMPRMIGVSTSGGNQIVESFKRGSSEVVDLEVDEIRETAVNEPL 241 (319)
T ss_pred HhCCCCCEEEEcCCccHHHHHHHHHHHHHHhCCCcCCCCEEEEEeeCCCCHHHHHHHcCCCcccCCCcchhhhcccCCCc
Confidence 99767999999999999999999999998 799999999999986442 222110 01111 11111
Q ss_pred C---------cccccccccCEEEEeCHHHHHHHHHHHHHhcCCeEecchHHHHHHHHHHHhcCCCCCCEEEEEecCCC
Q 020805 234 V---------PGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVCSQFAC 302 (321)
Q Consensus 234 ~---------~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~~Gi~~~pss~~a~aa~~~~~~~~~~~~~~vv~i~tgg~ 302 (321)
. ...+..++.++++.|+|+|+++++++|++++||++||++|+++++++++.+++.. +++||+++|||.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~g~~~~v~d~e~~~a~~~la~~egi~~epssa~alaa~~~~~~~~~~-~~~vv~i~tGg~ 318 (319)
T PRK06381 242 VSYRSFDGDNALEAIYDSHGYAFGFSDDEMVKYAELLRRMEGLNALPASASALAALVKYLKKNGV-NDNVVAVITGRR 318 (319)
T ss_pred ccccCCCHHHHHHHHHHcCCEEEEECHHHHHHHHHHHHHhCCcccCchHHHHHHHHHHHHHcCCC-CCcEEEEecCCC
Confidence 0 0112345677999999999999999999999999999999999999999887643 489999999984
No 49
>PRK08329 threonine synthase; Validated
Probab=100.00 E-value=5.9e-57 Score=418.73 Aligned_cols=275 Identities=20% Similarity=0.209 Sum_probs=241.1
Q ss_pred hhhhccCCcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHH
Q 020805 12 VTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAA 91 (321)
Q Consensus 12 i~~~~~~TPL~~~~~l~~~~g~~v~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~AlA~aa~~ 91 (321)
+++++|.|||+++. .+||+|+|++|||||||||++.+++.++.++|. ++||++|+||||+|+|++|++
T Consensus 58 ~sl~eg~Tpl~~~~-------~~l~~K~E~~nPtGSfKdRga~~~i~~a~~~g~-----~~vv~aSsGN~g~alA~~aa~ 125 (347)
T PRK08329 58 PHLTPPITPTVKRS-------IKVYFKLDYLQPTGSFKDRGTYVTVAKLKEEGI-----NEVVIDSSGNAALSLALYSLS 125 (347)
T ss_pred CcCCCCCCccccCC-------CeEEEEeCCCCCCcCCHHHHHHHHHHHHHHcCC-----CEEEEECCCcHHHHHHHHHHH
Confidence 67889999999973 489999999999999999999999999999886 679999999999999999999
Q ss_pred cCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEcCCCCCCcchhhhhhchHHHHHhh
Q 020805 92 KQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKG 171 (321)
Q Consensus 92 ~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~Ei~~q 171 (321)
+|++|+||||+++++.|+.+++.|||+|+.++++ ++++.+.+++++++. +++|++++.||.+ ++||+|+++||++|
T Consensus 126 ~G~~~~v~vp~~~~~~k~~~~~~~GA~v~~v~~~--~~~~~~~a~~l~~~~-~~~~~~~~~np~~-~eG~~t~~~Ei~eq 201 (347)
T PRK08329 126 EGIKVHVFVSYNASKEKISLLSRLGAELHFVEGD--RMEVHEEAVKFSKRN-NIPYVSHWLNPYF-LEGTKTIAYEIYEQ 201 (347)
T ss_pred cCCcEEEEECCCChHHHHHHHHHcCCEEEEECCC--HHHHHHHHHHHHHhc-CCeeccCCCCchh-hccchhHHHHHHHH
Confidence 9999999999999999999999999999999864 567778888888775 7788899989988 78999999999999
Q ss_pred hCCCCCEEEEecCCchhHHHHHHHHHhcC------CCcEEEEEecCCCCccCC-CCCCCcccccccCCCCcc-----ccc
Q 020805 172 SGGRIDALVSGIGTGGTITGAGKFLKEKN------PNIKLYGIEPTESPVLSG-GKPGPHKIQGIGAGFVPG-----VLE 239 (321)
Q Consensus 172 l~~~~d~vv~p~G~Gg~~aGi~~~~k~~~------~~~~vigv~~~~~~~~~~-g~~~~~~~~gl~~~~~~~-----~~~ 239 (321)
++ .||+||+|+|+||+++|++++||++. +.+|+|+|||++++++.. .+...+.++|++.+..+. .+.
T Consensus 202 l~-~pD~vvvpvG~Gg~l~Gi~~g~kel~~~g~i~~~p~ii~Vq~~g~~~~~~~~~~~~t~a~gi~i~~~~~~~~~~~~l 280 (347)
T PRK08329 202 IG-VPDYAFVPVGSGTLFLGIWKGFKELHEMGEISKMPKLVAVQAEGYESLCKRSKSENKLADGIAIPEPPRKEEMLRAL 280 (347)
T ss_pred cC-CCCEEEEeCCcHHHHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCchHHhccCCCCceeeeEEeCCCCCHHHHHHHH
Confidence 95 79999999999999999999999873 568999999999866542 223345667877654332 233
Q ss_pred ccccCEEEEeCHHHHHHHHHHHHHhcCCeEecchHHHHHHHHHHHhcCC-CCCCEEEEEecCCCCC
Q 020805 240 VNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPE-NAGKLIVVCSQFACIT 304 (321)
Q Consensus 240 ~~~~d~~~~V~d~e~~~a~~~l~~~~Gi~~~pss~~a~aa~~~~~~~~~-~~~~~vv~i~tgg~~~ 304 (321)
++..+.++.|+|+|+++++++|++ +|+++||+||+++++++++.+++. .++++||+++||+++.
T Consensus 281 ~~~~g~~~~V~d~e~~~a~~~l~~-~Gi~vepssa~a~Aa~~~l~~~g~i~~~~~Vv~~~TG~glK 345 (347)
T PRK08329 281 EESNGFCISVGEEETRAALHWLRR-MGFLVEPTSAVALAAYWKLLEEGLIEGGSKVLLPLSGSGLK 345 (347)
T ss_pred HHhCCEEEEECHHHHHHHHHHHHh-cCceECccHHHHHHHHHHHHHhCCCCCCCeEEEEeCCCCcc
Confidence 456778999999999999999986 799999999999999999998876 5788999999998754
No 50
>cd01563 Thr-synth_1 Threonine synthase is a pyridoxal phosphate (PLP) dependent enzyme that catalyses the last reaction in the synthesis of threonine from aspartate. It proceeds by converting O-phospho-L-homoserine (OPH) into threonine and inorganic phosphate. In plants, OPH is an intermediate between the methionine and threonine/isoleucine pathways. Thus threonine synthase competes for OPH with cystathionine-gamma-synthase, the first enzyme in the methionine pathway. These enzymes are in general dimers. Members of this CD, Thr-synth_1, are widely distributed in bacteria, archaea and higher plants.
Probab=100.00 E-value=5.3e-57 Score=416.87 Aligned_cols=283 Identities=25% Similarity=0.260 Sum_probs=245.8
Q ss_pred hhhhhhccCCcceecccccCCCC-ceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHH
Q 020805 10 KDVTELIGNTPLVYLNNIVNGCV-ARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFM 88 (321)
Q Consensus 10 ~~i~~~~~~TPL~~~~~l~~~~g-~~v~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~AlA~a 88 (321)
++|.+.+|+|||+++++|+...+ .+||+|+|++|||||||||++.+++.++.++|. ++||++|+||||+|+|++
T Consensus 14 ~~~~l~~g~TPl~~~~~l~~~~g~~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~-----~~vv~~SsGN~g~alA~~ 88 (324)
T cd01563 14 DIVSLGEGNTPLVRAPRLGERLGGKNLYVKDEGLNPTGSFKDRGMTVAVSKAKELGV-----KAVACASTGNTSASLAAY 88 (324)
T ss_pred CcccCCCCCCceeechhhHhhcCCCceEEEecCCCCcccHHHhhHHHHHHHHHHcCC-----CEEEEeCCCHHHHHHHHH
Confidence 56899999999999999997666 799999999999999999999999999998875 679999999999999999
Q ss_pred HHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEcCCCCCCcchhhhhhchHHHH
Q 020805 89 AAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPEL 168 (321)
Q Consensus 89 a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~Ei 168 (321)
|+.+|++|++|||+++++.|+++++.+||+|+.++. +++++.+.+++++++. ++|++||+|+.+ +.||.+++.||
T Consensus 89 a~~~G~~~~ivvp~~~~~~k~~~l~~~GA~Vi~~~~--~~~~~~~~a~~~~~~~--~~~~~~~~n~~~-~~g~~t~~~Ei 163 (324)
T cd01563 89 AARAGIKCVVFLPAGKALGKLAQALAYGATVLAVEG--NFDDALRLVRELAEEN--WIYLSNSLNPYR-LEGQKTIAFEI 163 (324)
T ss_pred HHHcCCceEEEEeCCCCHHHHHHHHHcCCEEEEECC--cHHHHHHHHHHHHHhc--CeeccCCCCcce-ecchhhhHHHH
Confidence 999999999999999999999999999999999986 4678888899988875 789999999998 67999999999
Q ss_pred HhhhCC-CCCEEEEecCCchhHHHHHHHHHhcC------CCcEEEEEecCCCCccC----CCCC-------CCccccccc
Q 020805 169 WKGSGG-RIDALVSGIGTGGTITGAGKFLKEKN------PNIKLYGIEPTESPVLS----GGKP-------GPHKIQGIG 230 (321)
Q Consensus 169 ~~ql~~-~~d~vv~p~G~Gg~~aGi~~~~k~~~------~~~~vigv~~~~~~~~~----~g~~-------~~~~~~gl~ 230 (321)
++|+++ .+|+||+|+|+||+++|++.++|..+ +.++||+|||.+++.+. .+.. ..+.++|++
T Consensus 164 ~~q~~~~~~d~vv~~vGtGg~~~G~~~~~k~~~~~g~~~~~~~vigve~~~~~~~~~~~~~g~~~~~~~~~~~t~~~gl~ 243 (324)
T cd01563 164 AEQLGWEVPDYVVVPVGNGGNITAIWKGFKELKELGLIDRLPRMVGVQAEGAAPIVRAFKEGKDDIEPVENPETIATAIR 243 (324)
T ss_pred HHHcCCCCCCEEEEecCCcHHHHHHHHHHHHHHhCCccccCCeEEEEecCCCCHHHHHHHcCCCccCcCCCCCceeeeee
Confidence 999963 69999999999999999999999875 57999999999986542 2211 123446665
Q ss_pred CCCCc-c----cccccccCEEEEeCHHHHHHHHHHHHHhcCCeEecchHHHHHHHHHHHhcCC-CCCCEEEEEecCCC
Q 020805 231 AGFVP-G----VLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPE-NAGKLIVVCSQFAC 302 (321)
Q Consensus 231 ~~~~~-~----~~~~~~~d~~~~V~d~e~~~a~~~l~~~~Gi~~~pss~~a~aa~~~~~~~~~-~~~~~vv~i~tgg~ 302 (321)
.+..+ + .+..+..|+++.|+|+|+++++++|++.+|+++||+||+++++++++.+++. .++++||+++||+.
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~~pssa~alaa~~~l~~~~~~~~~~~Vv~v~tg~g 321 (324)
T cd01563 244 IGNPASGPKALRAVRESGGTAVAVSDEEILEAQKLLARTEGIFVEPASAASLAGLKKLREEGIIDKGERVVVVLTGHG 321 (324)
T ss_pred cCCCCCHHHHHHHHHHhCCEEEEECHHHHHHHHHHHHhcCCceeCchHHHHHHHHHHHHHcCCCCCCCcEEEEeCCCc
Confidence 44321 1 1234567899999999999999999999999999999999999999887653 46789999999964
No 51
>PRK06260 threonine synthase; Validated
Probab=100.00 E-value=7.3e-57 Score=425.47 Aligned_cols=289 Identities=24% Similarity=0.236 Sum_probs=247.4
Q ss_pred hhhhhhccCCcceecccccCCCCc-eEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHH
Q 020805 10 KDVTELIGNTPLVYLNNIVNGCVA-RIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFM 88 (321)
Q Consensus 10 ~~i~~~~~~TPL~~~~~l~~~~g~-~v~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~AlA~a 88 (321)
+.+++++|+|||+++++|+..+|. +||+|+|++|||||||||++.+++.++.++|. ++||++|+||||+|+|++
T Consensus 59 ~~v~l~~G~TPLv~~~~l~~~~g~~~l~~K~E~~nPTGSfKdRga~~~v~~a~~~g~-----~~vv~aSsGN~g~alA~~ 133 (397)
T PRK06260 59 KIVSLNEGGTPLYRCPNLEKELGVKELYVKHEGANPTGSFKDRGMTVGVTKALELGV-----KTVACASTGNTSASLAAY 133 (397)
T ss_pred CcccCCCCCCCeEEchhhHHHhCCCcEEEEeCCCCCCcCcHHHHHHHHHHHHHHcCC-----CEEEEeCCcHHHHHHHHH
Confidence 358899999999999999987786 89999999999999999999999999999886 679999999999999999
Q ss_pred HHHcCCeEEEEecCC-CCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEcCCCCCCcchhhhhhchHHH
Q 020805 89 AAAKQYRLIITMPAS-MSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPE 167 (321)
Q Consensus 89 a~~~G~~~~ivvp~~-~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~E 167 (321)
|+++|++|+||||++ ++..|+.+++.|||+|+.+++ +++++.+.+++++++. ++|+++++ ||.+ .+||+|+++|
T Consensus 134 aa~~G~~~~i~vP~~~~~~~k~~~~~~~GA~vi~v~~--~~~~~~~~a~~~~~~~-g~y~~~~~-np~~-~~G~~t~a~E 208 (397)
T PRK06260 134 AARAGLKCYVLLPAGKVALGKLAQALLHGAKVLEVDG--NFDDALDMVVELAKEG-KIYLLNSI-NPFR-LEGQKTIGFE 208 (397)
T ss_pred HHHcCCcEEEEEeCCCccHHHHHHHHhcCCEEEEECC--cHHHHHHHHHHHHhhC-CEEeecCC-Cchh-hcchhhHHHH
Confidence 999999999999997 789999999999999999986 4788889999988876 78898887 8888 7899999999
Q ss_pred HHhhhCC-CCCEEEEecCCchhHHHHHHHHHhcCC------CcEEEEEecCCCCccC----CCCCC-------Ccccccc
Q 020805 168 LWKGSGG-RIDALVSGIGTGGTITGAGKFLKEKNP------NIKLYGIEPTESPVLS----GGKPG-------PHKIQGI 229 (321)
Q Consensus 168 i~~ql~~-~~d~vv~p~G~Gg~~aGi~~~~k~~~~------~~~vigv~~~~~~~~~----~g~~~-------~~~~~gl 229 (321)
|++|+++ .||+||+|+|+||+++|++++||++.+ .+|+|+||+++++.+. .+... .+..+++
T Consensus 209 i~eQl~~~~pd~vvvpvG~Gg~~~Gi~~~~~~l~~~G~i~~~prii~Vq~~g~~~~~~a~~~g~~~~~~~~~~~tia~~i 288 (397)
T PRK06260 209 IADQLGWEVPDRVVLPVGNAGNISAIWKGFKELVELGIIDKLPKMTGIQAEGAAPIVEAIKKGKDEIEPVENPETVATAI 288 (397)
T ss_pred HHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHhcCCcCCCCeEEEEecCCCcHHHHHHHcCCCcccccCCCCceeeee
Confidence 9999976 699999999999999999999998763 3799999999997552 23221 1223344
Q ss_pred cCCCCccc------ccccccCEEEEeCHHHHHHHHHHHHHhcCCeEecchHHHHHHHHHHHhcCC-CCCCEEEEEecCCC
Q 020805 230 GAGFVPGV------LEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPE-NAGKLIVVCSQFAC 302 (321)
Q Consensus 230 ~~~~~~~~------~~~~~~d~~~~V~d~e~~~a~~~l~~~~Gi~~~pss~~a~aa~~~~~~~~~-~~~~~vv~i~tgg~ 302 (321)
..+. |.. +.++..+.++.|+|+|+++++++|++++|+++||+||+++++++++.+++. .++++||+++||++
T Consensus 289 ~i~~-p~~~~~~~~~l~~~~g~~v~V~d~e~~~a~~~la~~eGi~vepssaaalAa~~~l~~~g~i~~~~~VV~i~tG~g 367 (397)
T PRK06260 289 RIGN-PVNAPKALRAIRESGGTAEAVSDEEILDAQKLLARKEGIGVEPASAASVAGLIKLVEEGVIDKDERVVCITTGHL 367 (397)
T ss_pred EeCC-CCCHHHHHHHHHHHCCEEEEECHHHHHHHHHHHHHhCCCeeCchHHHHHHHHHHHHHcCCCCCCCeEEEEeCCCc
Confidence 3221 211 234456789999999999999999999999999999999999999988764 57889999999988
Q ss_pred CCCHHHH
Q 020805 303 ITSDSWL 309 (321)
Q Consensus 303 ~~~~~~~ 309 (321)
+.+.+.+
T Consensus 368 lK~~~~~ 374 (397)
T PRK06260 368 LKDPDAA 374 (397)
T ss_pred cCchHHH
Confidence 7444444
No 52
>PRK08206 diaminopropionate ammonia-lyase; Provisional
Probab=100.00 E-value=1.2e-56 Score=422.77 Aligned_cols=303 Identities=21% Similarity=0.207 Sum_probs=252.1
Q ss_pred hhhhh--hhhccCCcceecccccCCCC-ceEEEEeCCC-CCCCchhhHHHHHHHHHHHH--cCC--------------CC
Q 020805 8 IAKDV--TELIGNTPLVYLNNIVNGCV-ARIAAKLEMM-EPCSSVKDRIGYSMISDAEA--KGL--------------IT 67 (321)
Q Consensus 8 ~~~~i--~~~~~~TPL~~~~~l~~~~g-~~v~~K~E~~-~ptGS~K~R~a~~~l~~a~~--~g~--------------~~ 67 (321)
+.+++ ....++|||+++++|++.+| .+||+|+|++ |||||||+||+.+.+..+.. .+. +.
T Consensus 32 a~~~~~~~~~~~~TPL~~~~~l~~~~G~~~v~~K~E~~q~ptgSFK~RG~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~ 111 (399)
T PRK08206 32 ARAFHQSFPGYAPTPLVALPDLAAELGVGSILVKDESYRFGLNAFKALGGAYAVARLLAEKLGLDISELSFEELTSGEVR 111 (399)
T ss_pred HHHHHhcCCCCCCCCCcchHHHHHHhCCCcEEEecccCcCCCCChHHhhHHHHHHHHHHHHhCCCcccCCHHHhhhhHHH
Confidence 45567 55889999999999998888 5999999998 59999999999998887653 221 00
Q ss_pred C--CCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCe
Q 020805 68 P--GESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNA 145 (321)
Q Consensus 68 ~--g~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~ 145 (321)
+ .+.+|+++|+||||+|+|++|+.+|++|+||||+++++.|+..++.|||+|+.++. +++++.+.+.+++++. ++
T Consensus 112 ~~~~~~~vv~aSsGN~g~alA~~a~~~G~~~~Ivvp~~~~~~k~~~i~~~GA~Vi~v~~--~~~~~~~~a~~~~~~~-g~ 188 (399)
T PRK08206 112 EKLGDITFATATDGNHGRGVAWAAQQLGQKAVIYMPKGSSEERVDAIRALGAECIITDG--NYDDSVRLAAQEAQEN-GW 188 (399)
T ss_pred HhccCCEEEEeCCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEeCC--CHHHHHHHHHHHHHHc-CC
Confidence 0 01359999999999999999999999999999999999999999999999999996 5788889999988876 78
Q ss_pred EEcC-----CCCC-CcchhhhhhchHHHHHhhhCC---CCCEEEEecCCchhHHHHHHHHHhcC--CCcEEEEEecCCCC
Q 020805 146 YMLQ-----QFEN-PANPKIHYETTGPELWKGSGG---RIDALVSGIGTGGTITGAGKFLKEKN--PNIKLYGIEPTESP 214 (321)
Q Consensus 146 ~~~~-----~~~~-~~~~~~g~~~~~~Ei~~ql~~---~~d~vv~p~G~Gg~~aGi~~~~k~~~--~~~~vigv~~~~~~ 214 (321)
+|++ ||+| +.+.++||.|+++||++|+++ .||+||+|+|+||+++|+++++|+++ +.++||+|||++++
T Consensus 189 ~~v~~~~~~~~~~~~~~~~~G~~t~a~EI~eQl~~~~~~pD~vvvpvG~GG~~aGi~~~~k~~~~~~~~kii~Vep~gs~ 268 (399)
T PRK08206 189 VVVQDTAWEGYEEIPTWIMQGYGTMADEAVEQLKEMGVPPTHVFLQAGVGSLAGAVLGYFAEVYGEQRPHFVVVEPDQAD 268 (399)
T ss_pred EEecCccccCcccccHHHHHHhHHHHHHHHHHHHhcCCCCCEEEEcCCccHHHHHHHHHHHHHcCCCCCEEEEECCCCCc
Confidence 8886 6765 556689999999999999965 59999999999999999999999884 47999999999997
Q ss_pred ccC----CCCCC------CcccccccCCC---CcccccccccCEEEEeCHHHHHHHHHHHHH----hcCCeEecchHHHH
Q 020805 215 VLS----GGKPG------PHKIQGIGAGF---VPGVLEVNIIDEVVQVSSDEAIETAKLLAL----KEGLFVGISSGGAA 277 (321)
Q Consensus 215 ~~~----~g~~~------~~~~~gl~~~~---~~~~~~~~~~d~~~~V~d~e~~~a~~~l~~----~~Gi~~~pss~~a~ 277 (321)
++. .+++. .+..+|+..+. .++.+.++.+|+++.|+|+|+++++++|++ ++|+++||+||+++
T Consensus 269 ~l~~s~~~g~~~~~~~~~~tia~gl~~~~~~~~~~~~~~~~~d~~v~VsD~ei~~a~r~La~~~~~~~gi~vepsgAa~l 348 (399)
T PRK08206 269 CLYQSAVDGKPVAVTGDMDTIMAGLACGEPNPLAWEILRNCADAFISCPDEVAALGMRILANPLGGDPPIVSGESGAVGL 348 (399)
T ss_pred hHHHHHHcCCcEEeCCCCCceeccCCCCCcCHHHHHHHHHhCCEEEEECHHHHHHHHHHHhcccCCCCCeeecchHHHHH
Confidence 653 33321 23445665433 234455678999999999999999999996 78999999999999
Q ss_pred HHHHHHHhc---------CC-CCCCEEEEEecCCCCCCHHHHHhhc
Q 020805 278 AAAIEIAKR---------PE-NAGKLIVVCSQFACITSDSWLIAIT 313 (321)
Q Consensus 278 aa~~~~~~~---------~~-~~~~~vv~i~tgg~~~~~~~~~~~~ 313 (321)
++++++.+. +. .++++||+|+||||++.+.+.+...
T Consensus 349 Aa~~~~~~~~~~~~~~~~~~i~~~~~Vv~iltgG~~d~~~~~~~~~ 394 (399)
T PRK08206 349 GALAALMTDPDYQELREKLGLDEDSRVLLISTEGDTDPDRYREIVW 394 (399)
T ss_pred HHHHHHHhcchhhHHHHhcCCCCCCEEEEEECCCCCCHHHHHHHhc
Confidence 999976532 22 3578999999999999999987543
No 53
>KOG1251 consensus Serine racemase [Signal transduction mechanisms; Amino acid transport and metabolism]
Probab=100.00 E-value=3.9e-57 Score=381.11 Aligned_cols=291 Identities=22% Similarity=0.314 Sum_probs=258.1
Q ss_pred chhhhhhhhccCCcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHH-HcCCCCCCCeEEEeeCCChHHHHH
Q 020805 7 NIAKDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAE-AKGLITPGESVLIEPTSGNTGIGL 85 (321)
Q Consensus 7 ~~~~~i~~~~~~TPL~~~~~l~~~~g~~v~~K~E~~~ptGS~K~R~a~~~l~~a~-~~g~~~~g~~~vv~~SsGN~g~Al 85 (321)
..++||.+.+-+||++.++.|.+..|.+||+|+|++|.+|+||.|||.+.+..+. ++.. +.|++.||||||+|+
T Consensus 14 ~A~~rik~~ihkTpVlTS~~ln~~~g~~vfFKcE~fQKtGaFKfRGAlNav~~l~~ek~~-----kgvithSSGNHaqAl 88 (323)
T KOG1251|consen 14 AAHQRIKPFIHKTPVLTSENLNEKVGRHVFFKCENFQKTGAFKFRGALNAVSSLKAEKRA-----KGVITHSSGNHAQAL 88 (323)
T ss_pred HHHHHHHhhhccCceechhhHHHHhhhheEeehhhhhhccceehhhhHHHHHHhhHhhhc-----CceEeecCCcHHHHH
Confidence 3678999999999999999999999999999999999999999999999998876 3333 679999999999999
Q ss_pred HHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEcCCCCCCcchhhhhhchH
Q 020805 86 AFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTG 165 (321)
Q Consensus 86 A~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 165 (321)
|++|+..|+||+||||.++|..|+..++.||++|+++++. .+++.+.++++.++. +.+.++||+.|.. +.|++|++
T Consensus 89 alaAk~~giPa~IVvP~~AP~~Kv~a~~~Yga~ii~~e~~--~~sRE~va~~ltee~-g~~~i~Py~~p~v-IaGqgTiA 164 (323)
T KOG1251|consen 89 ALAAKILGIPATIVVPKDAPICKVAATRGYGANIIFCEPT--VESRESVAKDLTEET-GYYLIHPYNHPSV-IAGQGTIA 164 (323)
T ss_pred HHHHHhcCCCeEEEecCCChHHHHHHHHhcCceEEEecCc--cchHHHHHHHHHHhc-CcEEeCCCCCcce-eeccchHH
Confidence 9999999999999999999999999999999999999974 468889999999988 8999999999998 89999999
Q ss_pred HHHHhhhCCCCCEEEEecCCchhHHHHHHHHHhcCCCcEEEEEecCCCCccC----CCCC----CC-cccccccC---CC
Q 020805 166 PELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLS----GGKP----GP-HKIQGIGA---GF 233 (321)
Q Consensus 166 ~Ei~~ql~~~~d~vv~p~G~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~----~g~~----~~-~~~~gl~~---~~ 233 (321)
.|+++|+ +.+|++|+|+|+||+++|++.+.|.+.|+++|++|||+..+.-. .|.. .+ +..+|.-. +.
T Consensus 165 ~ElleqV-g~iDalfvpvgGGGllSgvAlaa~~l~P~i~vy~veP~~a~d~~qsf~~g~I~~l~tp~TIADG~r~~~lG~ 243 (323)
T KOG1251|consen 165 LELLEQV-GEIDALFVPVGGGGLLSGVALAAKSLKPSIEVYAVEPEAADDGQQSFLKGKIVHLDTPKTIADGVRTSHLGP 243 (323)
T ss_pred HHHHHhh-CccceEEEeecCcchhhHHHHHHhccCCCcEEEEecCcccchHHHHHhcCCeEecCCchhhhhhhhhccccc
Confidence 9999999 58999999999999999999999999999999999999875322 2222 12 23355443 23
Q ss_pred CcccccccccCEEEEeCHHHHHHHHHHHHHhcCCeEecchHHHHHHHHHHHhcCCCCCCEEEEEecCCCCCCHHHH
Q 020805 234 VPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVCSQFACITSDSWL 309 (321)
Q Consensus 234 ~~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~~Gi~~~pss~~a~aa~~~~~~~~~~~~~~vv~i~tgg~~~~~~~~ 309 (321)
.+|.+.++++|++++|+|+|+.++++.++++-.+.+||+++.++|+++..-.+ ...|++.+|+||||+|...|-
T Consensus 244 ~t~pIir~~vddi~Tv~e~Ei~~~lk~~~ermK~~vEPTa~lgfAavl~~k~~--~~~K~igIiLsGGNVD~~~~~ 317 (323)
T KOG1251|consen 244 LTWPIIRDLVDDILTVSEDEIKEALKLIWERMKVVVEPTAALGFAAVLSHKFA--LNIKRIGIILSGGNVDLNSWA 317 (323)
T ss_pred cchHHHHHHhhhheeecHHHHHHHHHHHHHHHheeeccchhHHHHHHHhhhHH--hccCceEEEEeCCcccccchh
Confidence 46788899999999999999999999999999999999999999998865433 458999999999999999875
No 54
>PLN02569 threonine synthase
Probab=100.00 E-value=9e-56 Score=423.11 Aligned_cols=299 Identities=19% Similarity=0.135 Sum_probs=251.1
Q ss_pred hhhhhccCCcceecccccCC-CC-ceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHH
Q 020805 11 DVTELIGNTPLVYLNNIVNG-CV-ARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFM 88 (321)
Q Consensus 11 ~i~~~~~~TPL~~~~~l~~~-~g-~~v~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~AlA~a 88 (321)
.+++++|+|||+++++|++. +| .+||+|+|++|||||||||++.+++..+.+.|........|+++|+||||.|+|++
T Consensus 126 ~vsl~eG~TPLv~~~~l~~~~~G~~~l~~K~E~~nPTGSFKDRga~~~vs~a~~~g~~~~~~~~Vv~ASSGN~GaAlAay 205 (484)
T PLN02569 126 IVSLFEGNSNLFWAERLGKEFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMAKPVVGVGCASTGDTSAALSAY 205 (484)
T ss_pred ceecCCCCCceeEhhhhhHhhcCCccEEEEECCCCCCcCHHHHHHHHHHHHHHHhhhccCCccEEEEeCCcHHHHHHHHH
Confidence 37889999999999999877 77 48999999999999999999999999998876532112569999999999999999
Q ss_pred HHHcCCeEEEEecCC-CCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEcCCCCCCcchhhhhhchHHH
Q 020805 89 AAAKQYRLIITMPAS-MSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPE 167 (321)
Q Consensus 89 a~~~G~~~~ivvp~~-~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~E 167 (321)
|+.+|++|+||||++ .+..|+.+++.|||+|+.+++ +++++.+.+++++++. ++|+++++ ||.+ ++||+|+++|
T Consensus 206 aa~~Gl~~~I~vP~~~~~~~k~~qi~a~GA~Vi~v~g--~~d~a~~~a~e~~~~~-~~~~~n~~-Np~~-ieG~kT~a~E 280 (484)
T PLN02569 206 CAAAGIPSIVFLPADKISIAQLVQPIANGALVLSIDT--DFDGCMRLIREVTAEL-PIYLANSL-NSLR-LEGQKTAAIE 280 (484)
T ss_pred HHhcCCeEEEEEcCCCCCHHHHHHHHhcCCEEEEECC--CHHHHHHHHHHHHHHc-CCEecCCC-Ccch-hHhHHHHHHH
Confidence 999999999999996 788999999999999999996 5789999999988876 68999988 8888 7899999999
Q ss_pred HHhhhCCC-CCEEEEecCCchhHHHHHHHHHhcC------CCcEEEEEecCCCCccC----CCCC-------CCcccccc
Q 020805 168 LWKGSGGR-IDALVSGIGTGGTITGAGKFLKEKN------PNIKLYGIEPTESPVLS----GGKP-------GPHKIQGI 229 (321)
Q Consensus 168 i~~ql~~~-~d~vv~p~G~Gg~~aGi~~~~k~~~------~~~~vigv~~~~~~~~~----~g~~-------~~~~~~gl 229 (321)
|++|++++ ||+||+|+|+||+++|++++||++. +.+|+|+||+++++++. .|.. .++.++++
T Consensus 281 I~eQl~~~~pD~VvvPvG~Gg~l~Gi~kgfkel~~~G~i~~~Priv~Vqa~g~~pl~~a~~~G~~~~~~~~~~~T~A~gi 360 (484)
T PLN02569 281 ILQQFDWEVPDWVIVPGGNLGNIYAFYKGFKMCKELGLVDRLPRLVCAQAANANPLYRAYKSGWEEFKPVKANPTFASAI 360 (484)
T ss_pred HHHHcCCCCCCEEEEeCCchHHHHHHHHHHHHHHHcCCCCCCCeEEEEeeCCCcHHHHHHHcCCCccccCCCCCccchhh
Confidence 99999765 9999999999999999999999863 45799999999997653 2321 23445666
Q ss_pred cCCCCccccc------ccccCEEEEeCHHHHHHHHHHHHHhcCCeEecchHHHHHHHHHHHhcCC-CCCCEEEEEecCCC
Q 020805 230 GAGFVPGVLE------VNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPE-NAGKLIVVCSQFAC 302 (321)
Q Consensus 230 ~~~~~~~~~~------~~~~d~~~~V~d~e~~~a~~~l~~~~Gi~~~pss~~a~aa~~~~~~~~~-~~~~~vv~i~tgg~ 302 (321)
+.+. |.... ++.-+.++.|+|+|+++++++ ++++|+++||+||++++++.++.+++. .++++||+++||..
T Consensus 361 ~i~~-P~~~~~~l~al~~s~g~~v~VsDeEi~~a~~~-a~~~Gi~vepssAaalAal~kl~~~g~i~~~~~VV~i~Tg~G 438 (484)
T PLN02569 361 QIGD-PVSIDRAVYALKESNGIVEEATEEELMDAQAE-ADKTGMFLCPHTGVALAALKKLRASGVIGPTDRTVVVSTAHG 438 (484)
T ss_pred ccCC-CccHHHHHHHHHHhCCEEEEECHHHHHHHHHH-HHHCCcEECchHHHHHHHHHHHHHcCCCCCCCcEEEEeCCCc
Confidence 5542 33322 223345799999999999999 898999999999999999999988764 56789999999976
Q ss_pred CCCHHHHHhhcCCc
Q 020805 303 ITSDSWLIAITCMS 316 (321)
Q Consensus 303 ~~~~~~~~~~~~~~ 316 (321)
....+....|+...
T Consensus 439 lK~~~~~~~~~~~~ 452 (484)
T PLN02569 439 LKFTQSKIDYHSKE 452 (484)
T ss_pred ccChhHHHHhcccc
Confidence 66656566676543
No 55
>PRK06450 threonine synthase; Validated
Probab=100.00 E-value=2.1e-55 Score=405.61 Aligned_cols=264 Identities=23% Similarity=0.213 Sum_probs=222.3
Q ss_pred hhhhhccCCcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHH
Q 020805 11 DVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAA 90 (321)
Q Consensus 11 ~i~~~~~~TPL~~~~~l~~~~g~~v~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~AlA~aa~ 90 (321)
.+++++|+|||++.+ +||+|+|++|||||||||++.+++.++.++|. ++|+++|+||||.|+|++|+
T Consensus 51 ~vslgeG~TPLv~~~--------~l~~K~E~~nPTGSfKDRga~~~i~~a~~~g~-----~~vv~aSsGN~g~slA~~aa 117 (338)
T PRK06450 51 FISLGEGRTPLIKKG--------NIWFKLDFLNPTGSYKDRGSVTLISYLAEKGI-----KQISEDSSGNAGASIAAYGA 117 (338)
T ss_pred CCCCCCCCCCceecC--------CEEEEecCCCCcCCCHHHHHHHHHHHHHHcCC-----CEEEEECCcHHHHHHHHHHH
Confidence 478999999999864 69999999999999999999999999999875 67999999999999999999
Q ss_pred HcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEcCCCCCCcchhhhhhchHHHHHh
Q 020805 91 AKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWK 170 (321)
Q Consensus 91 ~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~Ei~~ 170 (321)
++|++|+||||+++++.|+++++.|||+|+.++++ ++++.+. +++. +.+|++++.||.+ ++|++|+++||++
T Consensus 118 ~~G~~~~i~vP~~~~~~k~~~i~~~GA~vi~v~~~--~~~~~~~----a~~~-g~~~~~~~~np~~-ieG~kTia~EI~e 189 (338)
T PRK06450 118 AAGIEVKIFVPETASGGKLKQIESYGAEVVRVRGS--REDVAKA----AENS-GYYYASHVLQPQF-RDGIRTLAYEIAK 189 (338)
T ss_pred HcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCC--HHHHHHH----HHhc-CeEeccCCCCccH-HHHHHHHHHHHHH
Confidence 99999999999999999999999999999999964 4554443 4444 7788999999998 7899999999999
Q ss_pred hhCC-CCCEEEEecCCchhHHHHHHHHHhcCC------CcEEEEEecCCCCccC----CCCCC-----CcccccccCCCC
Q 020805 171 GSGG-RIDALVSGIGTGGTITGAGKFLKEKNP------NIKLYGIEPTESPVLS----GGKPG-----PHKIQGIGAGFV 234 (321)
Q Consensus 171 ql~~-~~d~vv~p~G~Gg~~aGi~~~~k~~~~------~~~vigv~~~~~~~~~----~g~~~-----~~~~~gl~~~~~ 234 (321)
|+++ .||+||+|+|+||+++|++++||++.+ .+|+|+|||++++++. ++... .+..++|..+.
T Consensus 190 ql~~~~pD~vvvpvG~Ggll~Gi~~g~~el~~~G~i~~~prii~Vq~~g~~p~~~a~~~~~~~~~~~~~tia~~l~~~~- 268 (338)
T PRK06450 190 DLDWKIPNYVFIPVSAGTLLLGVYSGFKHLLDSGVISEMPKIVAVQTEQVSPLCAKFKGISYTPPDKVTSIADALVSTR- 268 (338)
T ss_pred HcCCCCCCEEEEECCchHHHHHHHHHHHHHHhcCCccCCCeEEEEeeCCCCHHHHHhcCCCCCCCCCCCcceeeeecCC-
Confidence 9964 599999999999999999999998864 3799999999987553 22111 12334554332
Q ss_pred cccc------cccccCEEEEeCHHHHHHHHHHHHHhcCCeEecchHHHHHHHHHHHhcCCCCCCEEEEEecCCCCC
Q 020805 235 PGVL------EVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVCSQFACIT 304 (321)
Q Consensus 235 ~~~~------~~~~~d~~~~V~d~e~~~a~~~l~~~~Gi~~~pss~~a~aa~~~~~~~~~~~~~~vv~i~tgg~~~ 304 (321)
|... .++. +..+.|+|+|+++++++|++ +|+++||+||++++++.++ ++++||+++||+.+.
T Consensus 269 p~~~~~~~~~i~~~-g~~v~V~d~ei~~a~~~La~-~Gi~vepssaaalAa~~~l------~~~~vv~vltG~glK 336 (338)
T PRK06450 269 PFLLDYMVKALSEY-GECIVVSDNEIVEAWKELAK-KGLLVEYSSATVYAAYKKY------SVNDSVLVLTGSGLK 336 (338)
T ss_pred CCCHHHHHHHHHhc-CcEEEECHHHHHHHHHHHHH-cCCEEChhHHHHHHHHHHC------CCCCEEEEeCCCCcc
Confidence 2221 2344 78999999999999999987 6999999999999999875 347899999996543
No 56
>PRK05638 threonine synthase; Validated
Probab=100.00 E-value=5.8e-55 Score=417.62 Aligned_cols=282 Identities=21% Similarity=0.221 Sum_probs=239.5
Q ss_pred hhhhhccCCcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHH
Q 020805 11 DVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAA 90 (321)
Q Consensus 11 ~i~~~~~~TPL~~~~~l~~~~g~~v~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~AlA~aa~ 90 (321)
.+++++|+|||++++ ++..+|.+||+|+|++|||||||||++.+++.+|++.|. ++|+++|+||||+|+|++|+
T Consensus 59 ~v~l~~G~TPLv~~~-~~~~~g~~l~~K~E~~nPtGSfKdR~a~~~i~~a~~~g~-----~~vv~aSsGN~g~alA~~aa 132 (442)
T PRK05638 59 IISLGEGGTPLIRAR-ISEKLGENVYIKDETRNPTGSFRDRLATVAVSYGLPYAA-----NGFIVASDGNAAASVAAYSA 132 (442)
T ss_pred ccccCCCCCcEEccc-chHHhCCeEEEEeCCCCCCCChHHHHHHHHHHHHHHcCC-----CEEEEeCCChHHHHHHHHHH
Confidence 367899999999994 666677899999999999999999999999999998875 77999999999999999999
Q ss_pred HcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEcCCCCCCcchhhhhhchHHHHHh
Q 020805 91 AKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWK 170 (321)
Q Consensus 91 ~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~Ei~~ 170 (321)
++|++|+||||+++++.|+++++.|||+|+.+++ +++++.+.+++++++. ++|++++++||.+ ++||+|+++||++
T Consensus 133 ~~G~~~~i~vp~~~~~~k~~~~~~~GA~vi~v~~--~~~~~~~~a~~~~~~~-~~~~~~~~~np~~-~eG~~t~a~Ei~e 208 (442)
T PRK05638 133 RAGKEAFVVVPRKVDKGKLIQMIAFGAKIIRYGE--SVDEAIEYAEELARLN-GLYNVTPEYNIIG-LEGQKTIAFELWE 208 (442)
T ss_pred HcCCCEEEEEeCCCCHHHHHHHHhcCcEEEEECC--CHHHHHHHHHHHHHhC-CeEecCCCCChhH-hhhHHHHHHHHHH
Confidence 9999999999999999999999999999999985 5788888999988775 8999999999998 7899999999999
Q ss_pred hhCCCCCEEEEecCCchhHHHHHHHHHhcCC------CcEEEEEecCCCCccC----CCCC--CCcccccccCCCCcc--
Q 020805 171 GSGGRIDALVSGIGTGGTITGAGKFLKEKNP------NIKLYGIEPTESPVLS----GGKP--GPHKIQGIGAGFVPG-- 236 (321)
Q Consensus 171 ql~~~~d~vv~p~G~Gg~~aGi~~~~k~~~~------~~~vigv~~~~~~~~~----~g~~--~~~~~~gl~~~~~~~-- 236 (321)
|++ ||+||+|+|+||+++|++++||++++ .++||+||+++++++. .+.. ..+...|+..+..+.
T Consensus 209 q~~--pD~vv~pvG~Gg~~~Gi~~gfkel~~~g~i~~~prii~Vq~~~~~p~~~~~~~~~~~~~~t~a~gl~~~~p~~~~ 286 (442)
T PRK05638 209 EIN--PTHVIVPTGSGSYLYSIYKGFKELLEIGVIEEIPKLIAVQTERCNPIASEILGNKTKCNETKALGLYVKNPVMKE 286 (442)
T ss_pred HHC--cCEEEEeCCchHHHHHHHHHHHHHHhCCcccCCCeEEEEecCCCCHHHHHHhcCCCCCCCceeeeEeeCCCCCHH
Confidence 994 99999999999999999999999865 3799999999887553 2221 122334543222110
Q ss_pred ---cccccccCEEEEeCHHHHHHHHHHHHHhcCCeEecchHHHHHHHHHHHhcCC-CCCCEEEEEecCCCCCC
Q 020805 237 ---VLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPE-NAGKLIVVCSQFACITS 305 (321)
Q Consensus 237 ---~~~~~~~d~~~~V~d~e~~~a~~~l~~~~Gi~~~pss~~a~aa~~~~~~~~~-~~~~~vv~i~tgg~~~~ 305 (321)
.+.++..+.++.|+|+++.++++.+++ +||++||+||+++++++++.+++. .++++||+++||++...
T Consensus 287 ~~~~~i~~~~g~~~~v~d~~i~~a~~~l~~-eGi~~epssaaa~Aa~~~~~~~g~i~~~~~Vv~i~tG~g~k~ 358 (442)
T PRK05638 287 YVSEAIKESGGTAVVVNEEEIMAGEKLLAK-EGIFAELSSAVVMPALLKLGEEGYIEKGDKVVLVVTGSGLKG 358 (442)
T ss_pred HHHHHHHHhCCEEEEECHHHHHHHHHHHHh-cCceecchHHHHHHHHHHHHHcCCCCCCCeEEEEeCCCCCCC
Confidence 122344567899999999998887765 799999999999999999988764 57889999999976554
No 57
>TIGR01747 diampropi_NH3ly diaminopropionate ammonia-lyase family. This small subfamily includes diaminopropionate ammonia-lyase from Salmonella typhimurium and a small number of close homologs, about 50 % identical in sequence. The enzyme is a pyridoxal phosphate-binding homodimer homologous to threonine dehydratase (threonine deaminase).
Probab=100.00 E-value=3.8e-54 Score=401.87 Aligned_cols=299 Identities=19% Similarity=0.197 Sum_probs=246.3
Q ss_pred hhhhhhhhccCCcceecccccCCCC-ceEEEEeCCCCC-CCchhhHHHHHHHHHHHHc----------------CCCC--
Q 020805 8 IAKDVTELIGNTPLVYLNNIVNGCV-ARIAAKLEMMEP-CSSVKDRIGYSMISDAEAK----------------GLIT-- 67 (321)
Q Consensus 8 ~~~~i~~~~~~TPL~~~~~l~~~~g-~~v~~K~E~~~p-tGS~K~R~a~~~l~~a~~~----------------g~~~-- 67 (321)
.+.++..+ .+|||++++.|++.+| .+||+|+|++|+ |||||+||+.+.+..+.++ +.+.
T Consensus 13 ~~~~~~~~-~~TPL~~~~~l~~~~g~~~v~~K~E~~~~~tgSFK~RG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (376)
T TIGR01747 13 FHKKIPGY-RPTPLCALDHLANLLGLKKILVKDESKRFGLNAFKMLGGSYAIAQYLAEKLHLDIETLSFEHLKNDAIGEK 91 (376)
T ss_pred HHHhCCCC-CCCCCcchHHHHHHhCCCcEEEeeCCCCCCCCChHHHHHHHHHHHHHHHHhCCCcccCCHHHHhhhHHHhh
Confidence 34455444 8999999999998888 599999999985 8999999999999887542 1111
Q ss_pred CCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEE
Q 020805 68 PGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYM 147 (321)
Q Consensus 68 ~g~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 147 (321)
.+..+|+++|+||||+|+|++|+.+|++|+||||+++++.|+..++.|||+|+.+++ +++++.+.+++++++. ++++
T Consensus 92 ~~~~~vv~aSsGN~g~a~A~~Aa~~G~~~~I~vP~~~~~~k~~~i~~~GAeVi~v~~--~~~~a~~~a~~~~~~~-g~~~ 168 (376)
T TIGR01747 92 MGQATFATATDGNHGRGVAWAAQQLGQKAVVYMPKGSAQERVENILNLGAECTITDM--NYDDTVRLAMQMAQQH-GWVV 168 (376)
T ss_pred cCCCEEEEECccHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECC--CHHHHHHHHHHHHHhc-CcEE
Confidence 123689999999999999999999999999999999999999999999999999996 5788888999988876 6888
Q ss_pred cC-----CCCCCcc-hhhhhhchHHHHHhhhCC----CCCEEEEecCCchhHHHHHHHHHhcC-CC-cEEEEEecCCCCc
Q 020805 148 LQ-----QFENPAN-PKIHYETTGPELWKGSGG----RIDALVSGIGTGGTITGAGKFLKEKN-PN-IKLYGIEPTESPV 215 (321)
Q Consensus 148 ~~-----~~~~~~~-~~~g~~~~~~Ei~~ql~~----~~d~vv~p~G~Gg~~aGi~~~~k~~~-~~-~~vigv~~~~~~~ 215 (321)
++ +|++... .++||+|+++||++|+++ .||+||+|+|+||+++|++.++++.. +. ++||+|||+++++
T Consensus 169 ~~~~~~~~~~~~~~~ii~G~~Tia~Ei~eQl~~~~~~~pD~vvvpvG~GGl~~Gi~~~~~~~~~~~~p~vi~Vep~ga~~ 248 (376)
T TIGR01747 169 VQDTAWEGYEKIPTWIMQGYATLADEAVEQLREMGSVTPTHVLLQAGVGSMAGGVLGYFVDVYSENNPHSIVVEPDKADC 248 (376)
T ss_pred eccccccccccCCchHHHHHHHHHHHHHHHhhccCCCCCCEEEECCchhHHHHHHHHHHHHhcCCCCCEEEEEeeCCCCH
Confidence 76 4655222 278999999999999962 69999999999999999999998764 33 6999999999987
Q ss_pred cC----C--CCCC------CcccccccCCCC---cccccccccCEEEEeCHHHHHHHHHHHHHhc----CCeEecchHHH
Q 020805 216 LS----G--GKPG------PHKIQGIGAGFV---PGVLEVNIIDEVVQVSSDEAIETAKLLALKE----GLFVGISSGGA 276 (321)
Q Consensus 216 ~~----~--g~~~------~~~~~gl~~~~~---~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~~----Gi~~~pss~~a 276 (321)
+. . +++. .+.++||+.+.+ ++.+.++..|.++.|+|+|+.+++++|++.. ++++||++|++
T Consensus 249 ~~~s~~~~~g~~~~~~~~~~Tiadgl~~~~~~~~~~~~~~~~~~~~v~V~D~ei~~A~~~L~~~~g~~~~i~~epaga~~ 328 (376)
T TIGR01747 249 LYQSAVKKDGDIVNVGGDMATIMAGLACGEPNPISWEILRNCTSQFISAQDSVAAKGMRVLGAPYGGDPRIISGESGAVG 328 (376)
T ss_pred HHHHHHhcCCCeEEcCCCccccccccccCCcchHHHHHHHhcCCEEEEcCHHHHHHHHHHHhcccCCCCeEeeeCchHHH
Confidence 63 2 3321 245567775532 4556678899999999999999999999865 59999999999
Q ss_pred HHHHHHHH---------hcCC-CCCCEEEEEecCCCCCCHHHHH
Q 020805 277 AAAAIEIA---------KRPE-NAGKLIVVCSQFACITSDSWLI 310 (321)
Q Consensus 277 ~aa~~~~~---------~~~~-~~~~~vv~i~tgg~~~~~~~~~ 310 (321)
++++...+ +++. .++++||+|+||||++++.|.+
T Consensus 329 la~l~~~~~~~~~~~~~~~~~~~~~~~vvvi~t~gn~d~~~~~~ 372 (376)
T TIGR01747 329 LGLLAAVMYHPQYQSLMEKLQLDKDAVVLVISTEGDTDPDHYRE 372 (376)
T ss_pred HHHHHHHHhCchHHHHHHHcCCCCCCEEEEEeCCCCCCHHHHHH
Confidence 98888433 3333 4579999999999999999875
No 58
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy
Probab=100.00 E-value=1.7e-53 Score=378.60 Aligned_cols=243 Identities=43% Similarity=0.598 Sum_probs=226.9
Q ss_pred CcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEE
Q 020805 19 TPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLII 98 (321)
Q Consensus 19 TPL~~~~~l~~~~g~~v~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~AlA~aa~~~G~~~~i 98 (321)
|||+++++++...+.+||+|+|++|||||||||++.+++..+.++|.+ ++ .+|+++|+||||.|+|++|+.+|++|++
T Consensus 1 TPl~~~~~l~~~~~~~l~~K~e~~~ptgS~K~R~a~~~l~~a~~~g~~-~~-~~vv~~ssGN~g~alA~~a~~~g~~~~v 78 (244)
T cd00640 1 TPLVRLKRLSKLGGANIYLKLEFLNPTGSFKDRGALNLILLAEEEGKL-PK-GVIIESTGGNTGIALAAAAARLGLKCTI 78 (244)
T ss_pred CCeeEccccccccCCEEEEEecccCCcCCcHHHHHHHHHHHHHHcCCC-CC-CEEEEeCCcHHHHHHHHHHHHcCCCEEE
Confidence 899999999987778999999999999999999999999999998855 33 6799999999999999999999999999
Q ss_pred EecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEcCCCCCCcchhhhhhchHHHHHhhhCC-CCC
Q 020805 99 TMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGG-RID 177 (321)
Q Consensus 99 vvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~Ei~~ql~~-~~d 177 (321)
|+|...++.|+++++.+|++|+.++.+ ++++.+.+++++++.++++|+++|.|+.+ +.|+.++++||++|+++ .||
T Consensus 79 ~~p~~~~~~~~~~~~~~Ga~v~~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~n~~~-~~g~~~~~~Ei~~q~~~~~~d 155 (244)
T cd00640 79 VMPEGASPEKVAQMRALGAEVVLVPGD--FDDAIALAKELAEEDPGAYYVNQFDNPAN-IAGQGTIGLEILEQLGGQKPD 155 (244)
T ss_pred EECCCCCHHHHHHHHHCCCEEEEECCC--HHHHHHHHHHHHHhCCCCEecCCCCCHHH-HHHHHHHHHHHHHHcCCCCCC
Confidence 999999999999999999999999974 68899999999988558999999989888 67888999999999976 699
Q ss_pred EEEEecCCchhHHHHHHHHHhcCCCcEEEEEecCCCCccCCCCCCCcccccccCCCCcccccccccCEEEEeCHHHHHHH
Q 020805 178 ALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIET 257 (321)
Q Consensus 178 ~vv~p~G~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~g~~~~~~~~gl~~~~~~~~~~~~~~d~~~~V~d~e~~~a 257 (321)
+||+|+|+||+++|++.++|..+|.++||+|++ +++.|+|+|++++
T Consensus 156 ~ivvp~GtGg~~~G~~~~~~~~~~~~~ii~v~~----------------------------------~~~~v~d~~~~~a 201 (244)
T cd00640 156 AVVVPVGGGGNIAGIARALKELLPNVKVIGVEP----------------------------------EVVTVSDEEALEA 201 (244)
T ss_pred EEEEecCccHHHHHHHHHHHHhCCCCEEEEEee----------------------------------eEEEECHHHHHHH
Confidence 999999999999999999999999999999997 7999999999999
Q ss_pred HHHHHHhcCCeEecchHHHHHHHHHHHhcCCCCCCEEEEEecCC
Q 020805 258 AKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVCSQFA 301 (321)
Q Consensus 258 ~~~l~~~~Gi~~~pss~~a~aa~~~~~~~~~~~~~~vv~i~tgg 301 (321)
+++|++++|+++||+||++++++.++.++. .++++||+++||+
T Consensus 202 ~~~l~~~~gi~~~pssa~~~aa~~~~~~~~-~~~~~vv~v~tg~ 244 (244)
T cd00640 202 IRLLAREEGILVEPSSAAALAAALKLAKKL-GKGKTVVVILTGG 244 (244)
T ss_pred HHHHHHHcCceECHhHHHHHHHHHHHHHhc-CCCCEEEEEeCCC
Confidence 999999999999999999999999988765 4688999999986
No 59
>TIGR03528 2_3_DAP_am_ly diaminopropionate ammonia-lyase. Members of this protein family are the homodimeric, pyridoxal phosphate enzyme diaminopropionate ammonia-lyase, which adds water to remove two amino groups, leaving pyruvate.
Probab=100.00 E-value=1.3e-53 Score=400.89 Aligned_cols=294 Identities=19% Similarity=0.180 Sum_probs=238.1
Q ss_pred hhccCCcceecccccCCCC-ceEEEEeCCCCC-CCchhhHHHHHHHHHHHH--cCCC--------------C--CCCeEE
Q 020805 14 ELIGNTPLVYLNNIVNGCV-ARIAAKLEMMEP-CSSVKDRIGYSMISDAEA--KGLI--------------T--PGESVL 73 (321)
Q Consensus 14 ~~~~~TPL~~~~~l~~~~g-~~v~~K~E~~~p-tGS~K~R~a~~~l~~a~~--~g~~--------------~--~g~~~v 73 (321)
..+.+|||++++.|++.+| .+||+|+|++|+ |||||+||+.+.+..+.+ .|.. . ....+|
T Consensus 37 ~~~~~TPL~~~~~L~~~~g~~~v~lK~E~~q~~tGSFK~RGa~~~v~~l~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~v 116 (396)
T TIGR03528 37 PGYQPTPLAELDNLAKHLGVGSILVKDESYRFGLNAFKVLGGSYAIGKYLAEKLGKDISELSFEKLKSNEIREKLGDITF 116 (396)
T ss_pred CCCcCCCCcchHHHHHHhCCCcEEEeeCCCCCCcCChHHHHHHHHHHHHHHHHhCCCcccccHHHhhhHHHHhhccCcEE
Confidence 3568999999999998888 699999999985 999999999999987532 2310 0 011379
Q ss_pred EeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEcC----
Q 020805 74 IEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQ---- 149 (321)
Q Consensus 74 v~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~---- 149 (321)
|++|+||||+|+|++|+++|++|+||||+++++.|++.++.|||+|+.++. +++++.+.+++++++. ++++++
T Consensus 117 v~aSsGN~g~alA~~aa~~Gi~~~IvvP~~~~~~K~~~ir~~GAeVi~~~~--~~~~a~~~a~~~a~~~-g~~~v~~~~~ 193 (396)
T TIGR03528 117 VTATDGNHGRGVAWAANQLGQKSVVYMPKGSAQIRLENIRAEGAECTITDL--NYDDAVRLAWKMAQEN-GWVMVQDTAW 193 (396)
T ss_pred EEECccHHHHHHHHHHHHcCCCEEEEEeCCCcHHHHHHHHhcCCEEEEECC--CHHHHHHHHHHHHHhc-CcEeeccccc
Confidence 999999999999999999999999999999999999999999999999985 5788899999998876 788875
Q ss_pred -CCCCCc-chhhhhhchHHHHHhhhC----CCCCEEEEecCCchhHHHHHHHHHhc-CCC-cEEEEEecCCCCccCC---
Q 020805 150 -QFENPA-NPKIHYETTGPELWKGSG----GRIDALVSGIGTGGTITGAGKFLKEK-NPN-IKLYGIEPTESPVLSG--- 218 (321)
Q Consensus 150 -~~~~~~-~~~~g~~~~~~Ei~~ql~----~~~d~vv~p~G~Gg~~aGi~~~~k~~-~~~-~~vigv~~~~~~~~~~--- 218 (321)
+|+|.. ..++||+|+++||++|++ +.||+||+|+|+||+++|++.++++. .+. ++||+|||++++++..
T Consensus 194 ~~~~~~~~~~i~G~~Tig~EI~eQl~~~~~~~pD~vvvpvG~Ggl~~gi~~~~~~~~~~~~p~vi~Vep~~a~~l~~s~~ 273 (396)
T TIGR03528 194 EGYEKIPTWIMQGYGTLALEALEQLKEQGVEKPTHVFLQAGVGSFAGAVQGYFASAYGEERPITVIVEPDAADCLYRSAI 273 (396)
T ss_pred cccccCchHHHHHHhHHHHHHHHHHhhcCCCCCCEEEEcCCcchHHHHHHHHHHHhcCCCCCEEEEEccCCCchHHHHHH
Confidence 576532 235899999999999996 26999999999999999999999554 444 5999999999987641
Q ss_pred ---CCCC------CcccccccCCC---CcccccccccCEEEEeCHHHHHHHHHHHHH----hcCCeEecchHHHHHHHHH
Q 020805 219 ---GKPG------PHKIQGIGAGF---VPGVLEVNIIDEVVQVSSDEAIETAKLLAL----KEGLFVGISSGGAAAAAIE 282 (321)
Q Consensus 219 ---g~~~------~~~~~gl~~~~---~~~~~~~~~~d~~~~V~d~e~~~a~~~l~~----~~Gi~~~pss~~a~aa~~~ 282 (321)
+++. .+..+|++.+. .++.+.++.+|+++.|+|+|+.+++++|++ ++++++||++|++++++..
T Consensus 274 ~~~g~~~~~~g~~~Tiadgl~~~~p~~~~~~~~~~~~d~~v~VsD~ei~~a~r~La~~~~~~~~~~~epsga~~~Aalaa 353 (396)
T TIGR03528 274 ADDGKPHFVTGDMATIMAGLACGEPNTIGWEILRDYASQFISCPDWVAAKGMRILGNPLKGDPRVISGESGAVGTGLLAA 353 (396)
T ss_pred hcCCCEEEeCCCccceecccccCCccHHHHHHHHHhCCeEEEECHHHHHHHHHHHhcccCCCCceeecCcHHHHHHHHHH
Confidence 2221 23446665432 234455678999999999999999999998 5799999999999966533
Q ss_pred HH---------hcCC-CCCCEEEEEecCCCCCCHHHHH
Q 020805 283 IA---------KRPE-NAGKLIVVCSQFACITSDSWLI 310 (321)
Q Consensus 283 ~~---------~~~~-~~~~~vv~i~tgg~~~~~~~~~ 310 (321)
++ +++. .++++||+|+||||++++.|.+
T Consensus 354 ~~~~~~~~~~~~~~~~~~~~~vv~i~tggn~d~~~~~~ 391 (396)
T TIGR03528 354 VMTNPDYKELREKLQLDKNSRVLLISTEGDTDPDNYRK 391 (396)
T ss_pred HHhCchhHHHHHhcCCCCCCEEEEEECCCCCCHHHHHH
Confidence 22 2222 3578999999999999998865
No 60
>TIGR00260 thrC threonine synthase. Involved in threonine biosynthesis it catalyses the reaction O-PHOSPHO-L-HOMOSERINE + H(2)O = L-THREONINE + ORTHOPHOSPHATE using pyridoxal phosphate as a cofactor. the enzyme is distantly related to the serine/threonine dehydratases which are also pyridoxal-phosphate dependent enzymes. the pyridoxal-phosphate binding site is a Lys (K) residues present at residue 70 of the model.
Probab=100.00 E-value=1.1e-53 Score=395.41 Aligned_cols=282 Identities=23% Similarity=0.228 Sum_probs=238.6
Q ss_pred hhhhhccCCcceecccccCCCCc-eEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHH
Q 020805 11 DVTELIGNTPLVYLNNIVNGCVA-RIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMA 89 (321)
Q Consensus 11 ~i~~~~~~TPL~~~~~l~~~~g~-~v~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~AlA~aa 89 (321)
.+...+++|||+++++++...+. +||+|+|++|||||||||++.+++.++.++|. .+|+++|+||||+|+|++|
T Consensus 16 ~~~l~~g~TPl~~~~~l~~~~g~~~i~~K~E~~nptGSfKdR~a~~~l~~a~~~g~-----~~vv~aSsGN~g~a~A~~a 90 (328)
T TIGR00260 16 LVDLGEGVTPLFRSPALVANVGIKNLYVLELFHNPTLSFKDRGMAVALTKALELGN-----DTVLCASTGNTGAAAAAYA 90 (328)
T ss_pred hhhhccCCccCccchHHHHhcCCccEEehhhccCCchhhHhhhHHHHHHHHHHcCC-----CEEEEeCCcHHHHHHHHHh
Confidence 57778899999999999887776 99999999999999999999999999998876 6799999999999999999
Q ss_pred HHcCCeEEEEecCC-CCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEcCCCCC-CcchhhhhhchHHH
Q 020805 90 AAKQYRLIITMPAS-MSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFEN-PANPKIHYETTGPE 167 (321)
Q Consensus 90 ~~~G~~~~ivvp~~-~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~E 167 (321)
+.+|++|+||||++ +++.|++.++.+||+|+.+++ +++++.+.+++++++. ++++++++++ |.+ +.||.++++|
T Consensus 91 ~~~g~~~~v~~p~~~~s~~k~~~~~~~GA~Vi~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~n~~~~~-~~g~~t~~~E 166 (328)
T TIGR00260 91 GKAGVKVVILYPAGKISLGKLAQALGYNAEVVAIDG--NFDDAQRLVKQLFGDK-EALGLNSVNSIPYR-LEGQKTYAFE 166 (328)
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhcCcEEEEecC--CHHHHHHHHHHHHhhc-CeeecccCCCCCeE-eeeehhHHHH
Confidence 99999999999998 899999999999999999996 5788999999988875 4555555421 666 6788999999
Q ss_pred HHhhhCC-CCCEEEEecCCchhHHHHHHHHHhc-------CCCcEEEEEecCCCCccC-----CCCCC-----Ccccccc
Q 020805 168 LWKGSGG-RIDALVSGIGTGGTITGAGKFLKEK-------NPNIKLYGIEPTESPVLS-----GGKPG-----PHKIQGI 229 (321)
Q Consensus 168 i~~ql~~-~~d~vv~p~G~Gg~~aGi~~~~k~~-------~~~~~vigv~~~~~~~~~-----~g~~~-----~~~~~gl 229 (321)
|++|+++ .||+||+|+|+||+++|++.++++. .| ++++|||.+++.+. .++.. .+..+++
T Consensus 167 i~~q~~~~~~d~iv~~vG~GG~~~G~~~~~~~~~~~g~~~~p--~v~~Ve~~~~~~~~~~~~~~g~~~~~~~~~t~~~~l 244 (328)
T TIGR00260 167 AVEQLGWEAPDKVVVPVPNSGNFGAILKGFKEKKEGGLDSLP--VKRGIQAEGAADIVRAFLESGQWEPIEDPATLSTAI 244 (328)
T ss_pred HHHHhCCCCCCEEEEECCCcchHHHHHHHHHHHHhcCCccCC--ceeEEEcCCCChHHHHHHcCCCcCcCCCCCccCcce
Confidence 9999974 7999999999999999999999974 34 99999999995332 33322 1233444
Q ss_pred cCCCCccc------ccccccCEEEEeCHHHHHHHHHHHHHhcCCeEecchHHHHHHHHHHHhcCC-CCCCEEEEEecCCC
Q 020805 230 GAGFVPGV------LEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPE-NAGKLIVVCSQFAC 302 (321)
Q Consensus 230 ~~~~~~~~------~~~~~~d~~~~V~d~e~~~a~~~l~~~~Gi~~~pss~~a~aa~~~~~~~~~-~~~~~vv~i~tgg~ 302 (321)
+.+. |.+ +.++..|+.+.|+|+|+++++++|++++|+++||+||+++++++++.+++. .++++||+++||+.
T Consensus 245 ~~~~-p~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~~pssa~alaa~~~~~~~~~~~~~~~vv~i~tG~~ 323 (328)
T TIGR00260 245 DIGN-PANWERALELFRRSNGNAEDVSDEEILEAIKLLAREEGYFVEPHSAVSVAALLKLVEKGTADPAERVVCALTGNG 323 (328)
T ss_pred ecCC-CCCHHHHHHHHHhcCCcEEecCHHHHHHHHHHHHHhcCeeECchHHHHHHHHHHHHhCCCCCCCCcEEEEecCCC
Confidence 3332 222 234678999999999999999999999999999999999999999887654 46789999999976
Q ss_pred CC
Q 020805 303 IT 304 (321)
Q Consensus 303 ~~ 304 (321)
..
T Consensus 324 ~k 325 (328)
T TIGR00260 324 LK 325 (328)
T ss_pred CC
Confidence 43
No 61
>TIGR01415 trpB_rel pyridoxal-phosphate dependent TrpB-like enzyme. This model represents a family of pyridoxal-phosphate dependent enzyme (pfam00291) closely related to the beta subunit of tryptophan synthase (TIGR00263). However, the only case in which a member of this family replaces a member of TIGR00263 is in Sulfolobus species which contain two sequences which hit this model, one of which is proximal to the alpha subunit. In every other case so far, either the species appears not to make tryptophan (there is no trp synthase alpha subunit), or a trp synthase beta subunit matching TIGR00263 is also found.
Probab=100.00 E-value=2e-52 Score=394.36 Aligned_cols=298 Identities=22% Similarity=0.248 Sum_probs=235.8
Q ss_pred hhhhhhhhccCCcceecccccCCCC--ceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEe-eCCChHHHH
Q 020805 8 IAKDVTELIGNTPLVYLNNIVNGCV--ARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIE-PTSGNTGIG 84 (321)
Q Consensus 8 ~~~~i~~~~~~TPL~~~~~l~~~~g--~~v~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~-~SsGN~g~A 84 (321)
+.+++....++|||+++++|++.+| ++||+|+|++|||||||+|++.+++..+.++|. +++++ +|+||||+|
T Consensus 58 v~~~~~l~g~pTPL~r~~~L~~~lg~~~~Iy~K~E~~nPtGS~K~R~A~~~~~~a~~~G~-----~~~vtetssGN~G~a 132 (419)
T TIGR01415 58 VLKRYAQIGRPTPLIRAKGLEELLGTPARIYYKYESVSPTGSHKINTAIAQAYYAKIEGA-----KRLVTETGAGQWGSA 132 (419)
T ss_pred HHHHHHhcCCCCCeEEccchhhhhCCCceEEEEECCCCCCCCcHHHHHHHHHHHHHHcCC-----CeEEEecCchHHHHH
Confidence 4444444446899999999998776 699999999999999999999999999999986 44665 688999999
Q ss_pred HHHHHHHcCCeEEEEecCCC---CHHHHHHHHHcCCEEEEeCCCCCh----------------hHHHHHHHHHHHhCC-C
Q 020805 85 LAFMAAAKQYRLIITMPASM---SLERRIILRAFGAELVLTDPAKGM----------------KGAVQKAEEILAKTP-N 144 (321)
Q Consensus 85 lA~aa~~~G~~~~ivvp~~~---~~~~~~~~~~~Ga~v~~~~~~~~~----------------~~~~~~a~~~~~~~~-~ 144 (321)
+|++|+++|++|+||||... ++.|+.+|+.|||+|+.++.+.+. ..++..+.+.+++.+ .
T Consensus 133 lA~aaa~~Gl~~~V~mp~~s~~~k~~k~~~m~~~GA~Vi~~~~~~~~~~r~~~~~~p~~~gsl~~ai~~a~e~a~~~~~~ 212 (419)
T TIGR01415 133 LSLAGALFGLECKVFMVRVSFNQKPYRKYLMELYGAEVIPSPSEFTEFGREVLKEDPDHPGSLGIAISEAIEYALSDEDT 212 (419)
T ss_pred HHHHHHHcCCcEEEEEeCCCcccCHHHHHHHHHcCCEEEEECCchhhHHHHhhhcccccccchHHHHHHHHHHHHhCCCC
Confidence 99999999999999999854 568899999999999999964210 012456666666543 4
Q ss_pred eEEcCCCCCCcchhhhhhchHHHHHhhhCC---CCCEEEEecCCchhHHHHHHHHHhc----CCCcEEEEEecCCCCccC
Q 020805 145 AYMLQQFENPANPKIHYETTGPELWKGSGG---RIDALVSGIGTGGTITGAGKFLKEK----NPNIKLYGIEPTESPVLS 217 (321)
Q Consensus 145 ~~~~~~~~~~~~~~~g~~~~~~Ei~~ql~~---~~d~vv~p~G~Gg~~aGi~~~~k~~----~~~~~vigv~~~~~~~~~ 217 (321)
.|+.+++.| +...||.++|+||++|++. .||+||+|+|+||+++|++.+|++. .++++||+|||++++.+.
T Consensus 213 ~y~~~~~~n--~~~~h~~~ig~Ei~~Ql~~~g~~pD~vv~~vG~Gg~~~Gi~~~f~~~~l~g~~~~rviaVep~~~~~l~ 290 (419)
T TIGR01415 213 KYSLGSVLN--HVLLHQTVIGLEAKKQMEEAGEDPDVIIGCVGGGSNFAGLAFPFVADKLSGKIDRRFIAAEPKACPTLT 290 (419)
T ss_pred EEEeCCCCc--HHHHHHHHHHHHHHHHHHhcCCCCCEEEEEeCchHHHHHHHHHHHHHHhcCCCCCEEEEEeeCCChhhh
Confidence 566666555 3467999999999999963 5999999999999999999888322 257999999999998776
Q ss_pred CCCC----------CC-cccccccCCCCcccc-----------------cccccCEEEEeCHHHHHHHHHHHHHhcCCeE
Q 020805 218 GGKP----------GP-HKIQGIGAGFVPGVL-----------------EVNIIDEVVQVSSDEAIETAKLLALKEGLFV 269 (321)
Q Consensus 218 ~g~~----------~~-~~~~gl~~~~~~~~~-----------------~~~~~d~~~~V~d~e~~~a~~~l~~~~Gi~~ 269 (321)
.+.. .+ ..+.+++..++|... ..+.+++.+.|+|+|+++++++|+++|||++
T Consensus 291 ~g~~~yd~~~~~~~~p~~~~~~lG~~~~p~~~~a~gl~~~~~~~~~~~l~~~~~~~~~~V~d~e~~~a~r~la~~eGi~~ 370 (419)
T TIGR01415 291 RGEYRYDFGDTAGLTPLLKMYTLGHDFIPPPIHAGGLRYHGVAPTLSLLVNLGIVEARAYDQEEAFEAAVIFAKTEGIVP 370 (419)
T ss_pred cCcccccccccccCCcceeeeecCCCCCCcceeccccccCCccHHHHHHhhcCceEEEEECHHHHHHHHHHHHHhcCCcc
Confidence 5431 11 234566655544322 1344567899999999999999999999999
Q ss_pred ecchHHHHHHHHHHHhcCCC--CCCEEEEEecC-CCCCCHHHHHhh
Q 020805 270 GISSGGAAAAAIEIAKRPEN--AGKLIVVCSQF-ACITSDSWLIAI 312 (321)
Q Consensus 270 ~pss~~a~aa~~~~~~~~~~--~~~~vv~i~tg-g~~~~~~~~~~~ 312 (321)
+|+||++++++++++++... +.++||+++|| |++|.+.|.+..
T Consensus 371 epssa~alaaai~~a~~~~~~~~~~vvv~~lsG~G~~d~~~y~~~~ 416 (419)
T TIGR01415 371 APESAHAIAAAIDEARKCRETGEEKVILFNLSGHGLLDLKAYAKYL 416 (419)
T ss_pred ccHHHHHHHHHHHHHHhcCcCCCCeEEEEEcCCCCcCCHHHHHHHh
Confidence 99999999999998877542 33478899999 999988776543
No 62
>PRK13028 tryptophan synthase subunit beta; Provisional
Probab=100.00 E-value=2.7e-52 Score=390.26 Aligned_cols=296 Identities=23% Similarity=0.210 Sum_probs=235.9
Q ss_pred hhhhhcc-CCcceecccccCCC-CceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHH
Q 020805 11 DVTELIG-NTPLVYLNNIVNGC-VARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFM 88 (321)
Q Consensus 11 ~i~~~~~-~TPL~~~~~l~~~~-g~~v~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~AlA~a 88 (321)
-+..++| +|||+++++|++.+ +++||+|+|++|||||||+|.+..++..+.+.|+ ...|+++|+||||+|+|++
T Consensus 54 ~~~~~~g~pTPL~~~~~Ls~~~Gg~~IylK~EdlnptGS~K~r~al~~~l~A~~~G~----~~vI~etgsGnhG~A~A~a 129 (402)
T PRK13028 54 LLKHYVGRPTPLYHAKRLSEELGGAQIYLKREDLNHTGAHKINNCLGQALLAKRMGK----KRLIAETGAGQHGVATATA 129 (402)
T ss_pred HHHHhCCCCCCeeehHHhHhhcCCCeEEEEECCCCCCcchHHHHHHHHHHHHHHcCC----CeEEEecCcHHHHHHHHHH
Confidence 3556776 79999999999888 5799999999999999999999999999999886 2456678999999999999
Q ss_pred HHHcCCeEEEEecCCCCH---HHHHHHHHcCCEEEEeCC-CCChhHHHHHHHH-HHHhCCCeEEcC-CCCC----Ccchh
Q 020805 89 AAAKQYRLIITMPASMSL---ERRIILRAFGAELVLTDP-AKGMKGAVQKAEE-ILAKTPNAYMLQ-QFEN----PANPK 158 (321)
Q Consensus 89 a~~~G~~~~ivvp~~~~~---~~~~~~~~~Ga~v~~~~~-~~~~~~~~~~a~~-~~~~~~~~~~~~-~~~~----~~~~~ 158 (321)
|+++|++|+||||+...+ .|+.+|+.+||+|+.++. ...++++.+.+.+ +.++.++.+|+. +..+ |.++.
T Consensus 130 aa~~Gl~~~I~m~~~d~~~q~~nv~~mr~~GAeVi~v~~g~~~~~~a~~~a~~~~~~~~~~~~y~~~s~~gp~p~p~~v~ 209 (402)
T PRK13028 130 AALFGLECEIYMGEVDIERQHPNVFRMKLLGAEVVPVTRGGRTLKEAVDSAFEDYLKDPDNTHYAIGSVVGPHPFPMMVR 209 (402)
T ss_pred HHHcCCCEEEEECCCcchhhHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHHhcCCcEEEecCcCCCCCcHHHHH
Confidence 999999999999986443 568899999999999984 3357788777744 555533555552 2221 33445
Q ss_pred hhhhchHHHHHhhhC----CCCCEEEEecCCchhHHHHHHHHHhcCCCcEEEEEecCC--------CCccCCCCCC----
Q 020805 159 IHYETTGPELWKGSG----GRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTE--------SPVLSGGKPG---- 222 (321)
Q Consensus 159 ~g~~~~~~Ei~~ql~----~~~d~vv~p~G~Gg~~aGi~~~~k~~~~~~~vigv~~~~--------~~~~~~g~~~---- 222 (321)
.||++++.||.+|+. ..||+||+|+|+||+++|++.+|++ .|+++||||||.+ ++++..+++.
T Consensus 210 ~~q~tig~Ei~~Q~~~~~g~~pD~vV~~VGgGg~~~Gi~~~f~~-~~~v~iigVE~~G~~~~~~~~aa~l~~g~~g~~~g 288 (402)
T PRK13028 210 DFQSVIGEEAREQFLEMTGRLPDAVVACVGGGSNAIGLFSAFLD-DESVRLVGVEPAGRGLDLGEHAATLTLGKPGVIHG 288 (402)
T ss_pred HHhHHHHHHHHHHHHHhhCCCCCEEEEEcCchHHHHHHHHHHHh-CCCceEEEEecCCCCcccccccccccCCCcceecc
Confidence 699999999999973 3699999999999999999999986 4899999999998 5566544431
Q ss_pred ----------------CcccccccCCCC-ccc--ccccccCEEEEeCHHHHHHHHHHHHHhcCCeEecchHHHHHHHHHH
Q 020805 223 ----------------PHKIQGIGAGFV-PGV--LEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEI 283 (321)
Q Consensus 223 ----------------~~~~~gl~~~~~-~~~--~~~~~~d~~~~V~d~e~~~a~~~l~~~~Gi~~~pss~~a~aa~~~~ 283 (321)
.+...||..+.+ |.. +.....|+.+.|+|+|+++++++|++.|||+++++||+++++++++
T Consensus 289 ~~~~~l~~~~g~~~~~~sia~gl~~~~vgp~~~~l~~~~~~~~v~VtD~eal~a~~~La~~eGIi~~~~sa~alA~a~~~ 368 (402)
T PRK13028 289 FKSYVLQDEDGEPAPVHSIAAGLDYPGVGPEHAYLKDIGRVEYVTATDEEALDAFFLLSRTEGIIPALESSHAVAYAIKL 368 (402)
T ss_pred cceeeccccCCCcCCccceeccccCCCCCHHHHHHHHhcCcEEEEECHHHHHHHHHHHHHhcCCeeccHHHHHHHHHHHh
Confidence 112234432211 211 2334568999999999999999999999999999999999999998
Q ss_pred HhcCCCCCCEEEEEecC-CCCCCHHHHHhh
Q 020805 284 AKRPENAGKLIVVCSQF-ACITSDSWLIAI 312 (321)
Q Consensus 284 ~~~~~~~~~~vv~i~tg-g~~~~~~~~~~~ 312 (321)
+++. .++++||+++|| |+.|.+.+.+..
T Consensus 369 a~~l-~~~~~VVv~lsG~G~kd~~~~~~~~ 397 (402)
T PRK13028 369 APEL-SKDETILVNLSGRGDKDIDYVAEML 397 (402)
T ss_pred hhhc-CCCCeEEEEECCCCccCHHHHHHHh
Confidence 7653 468899999999 899988887654
No 63
>PRK03910 D-cysteine desulfhydrase; Validated
Probab=100.00 E-value=1.3e-53 Score=394.76 Aligned_cols=299 Identities=21% Similarity=0.202 Sum_probs=242.9
Q ss_pred hhhhhhhccCCcceecccccCCCCceEEEEeCCCCCC--CchhhHHHHHHHHHHHHcCCCCCCCeEEEeeC--CChHHHH
Q 020805 9 AKDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPC--SSVKDRIGYSMISDAEAKGLITPGESVLIEPT--SGNTGIG 84 (321)
Q Consensus 9 ~~~i~~~~~~TPL~~~~~l~~~~g~~v~~K~E~~~pt--GS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~S--sGN~g~A 84 (321)
.+++...+++|||++++.|++..|.+||+|+|++||+ ||||||++.+++.++.++|. ++||++| +||||+|
T Consensus 6 ~~~~~~~~~~TPl~~~~~l~~~~g~~i~~K~E~lnp~g~gs~K~R~~~~~l~~a~~~g~-----~~vvt~g~s~gN~g~a 80 (331)
T PRK03910 6 FPRLELAGLPTPLEPLPRLSAALGPDIYIKRDDLTGLALGGNKTRKLEFLLADALAQGA-----DTLITAGAIQSNHARQ 80 (331)
T ss_pred CCCccccCCCCCceEhhhhhHhhCCcEEEEeccCCCCCCCchHHHHHHHHHHHHHHcCC-----CEEEEcCcchhHHHHH
Confidence 4567889999999999999887788999999999997 59999999999999998886 6788774 4899999
Q ss_pred HHHHHHHcCCeEEEEecCCCCH--------HHHHHHHHcCCEEEEeCCCCChh-HHHHHHHHHHHhCCCeE-EcCCCCCC
Q 020805 85 LAFMAAAKQYRLIITMPASMSL--------ERRIILRAFGAELVLTDPAKGMK-GAVQKAEEILAKTPNAY-MLQQFENP 154 (321)
Q Consensus 85 lA~aa~~~G~~~~ivvp~~~~~--------~~~~~~~~~Ga~v~~~~~~~~~~-~~~~~a~~~~~~~~~~~-~~~~~~~~ 154 (321)
+|++|+.+|++|+||||+..+. .|++.++.+||+|+.++...+.. .+...++++.++.+..| +..++.|+
T Consensus 81 lA~~a~~~G~~~~i~vp~~~~~~~~~~~~~~~~~~~~~~Ga~vi~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~ 160 (331)
T PRK03910 81 TAAAAAKLGLKCVLLLENPVPTEAENYLANGNVLLDDLFGAEIHVVPAGTDMDAQLEELAEELRAQGRRPYVIPVGGSNA 160 (331)
T ss_pred HHHHHHHhCCcEEEEEcCCCCcccccccCCCcHHHHHHcCCEEEEeCccchHHHHHHHHHHHHHHcCCceEEECCCCCCc
Confidence 9999999999999999998775 45689999999999998642222 23455666666543334 44567777
Q ss_pred cchhhhhhchHHHHHhhhCC---CCCEEEEecCCchhHHHHHHHHHhcCCCcEEEEEecCCCCccCCCCC---CCccccc
Q 020805 155 ANPKIHYETTGPELWKGSGG---RIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKP---GPHKIQG 228 (321)
Q Consensus 155 ~~~~~g~~~~~~Ei~~ql~~---~~d~vv~p~G~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~g~~---~~~~~~g 228 (321)
.+ ..|+.+++.||++|+++ .||+||+|+|||||++|+++++|+.+|+++||+|||++++.+..... .....++
T Consensus 161 ~~-~~g~~~~~~Ei~~q~~~~~~~~d~vv~~vGtGgt~~Gi~~~~k~~~~~~~vigVe~~~~~~~~~~~~~~~~~~~a~~ 239 (331)
T PRK03910 161 LG-ALGYVACALEIAQQLAEGGVDFDAVVVASGSGGTHAGLAAGLAALGPDIPVIGVTVSRSAAEQEPKVAKLAQATAEL 239 (331)
T ss_pred hh-HHHHHHHHHHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHH
Confidence 77 56888999999999963 69999999999999999999999999999999999999865432111 0112233
Q ss_pred ccCC--CC--cccccccccCEEEEeCHHHHHHHHHHHHHhcCCeEec-chHHHHHHHHHHHhcCCC-CCCEEEEEecCCC
Q 020805 229 IGAG--FV--PGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGI-SSGGAAAAAIEIAKRPEN-AGKLIVVCSQFAC 302 (321)
Q Consensus 229 l~~~--~~--~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~~Gi~~~p-ss~~a~aa~~~~~~~~~~-~~~~vv~i~tgg~ 302 (321)
++.+ .. .+.+..+++|+++.|+|+|+++++++|++++|+++|| |||+++++++++.++... ++++||+||||||
T Consensus 240 ~g~~~~~~~~~~~~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~ep~ysg~~~aa~~~~~~~~~~~~~~~Vv~i~tGG~ 319 (331)
T PRK03910 240 LGLPTEIPRADIRLWDDYVGPGYGVPTDEMLEAVKLLARTEGILLDPVYTGKAMAGLIDLIRQGRFKKGGNVLFIHTGGA 319 (331)
T ss_pred cCCCccCCcccEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHcCCCCCCCeEEEEECCCh
Confidence 4322 11 2235677899999999999999999999999999999 599999999998876553 6789999999999
Q ss_pred CCCHHHHHhhc
Q 020805 303 ITSDSWLIAIT 313 (321)
Q Consensus 303 ~~~~~~~~~~~ 313 (321)
.+...|-+.|.
T Consensus 320 ~~~~~~~~~~~ 330 (331)
T PRK03910 320 PALFAYADAFA 330 (331)
T ss_pred Hhhhhhhhhhc
Confidence 98877766553
No 64
>cd06446 Trp-synth_B Tryptophan synthase-beta: Trptophan synthase is a bifunctional enzyme that catalyses the last two steps in the biosynthesis of L-tryptophan via its alpha and beta reactions. In the alpha reaction, indole 3-glycerol phosphate is cleaved reversibly to glyceraldehyde 3-phosphate and indole at the active site of the alpha subunit. In the beta reaction, indole undergoes a PLP-dependent reaction with L-serine to form L-tryptophan at the active site of the beta subunit. Members of this CD, Trp-synth_B, are found in all three major phylogenetic divisions.
Probab=100.00 E-value=1.3e-52 Score=392.25 Aligned_cols=293 Identities=24% Similarity=0.220 Sum_probs=229.5
Q ss_pred hhhhhhhhcc-CCcceecccccCCC-CceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEe-eCCChHHHH
Q 020805 8 IAKDVTELIG-NTPLVYLNNIVNGC-VARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIE-PTSGNTGIG 84 (321)
Q Consensus 8 ~~~~i~~~~~-~TPL~~~~~l~~~~-g~~v~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~-~SsGN~g~A 84 (321)
++....++++ +|||+++++|+..+ +.+||+|+|++|||||||||++..++..+.++|. ..+++ +|+||||+|
T Consensus 23 ~~~~~~~~~~~~TPL~~l~~l~~~~g~~~l~~K~E~~nptgS~K~R~a~~~~~~a~~~g~-----~~vv~~~ssGN~g~a 97 (365)
T cd06446 23 LRELYKDYVGRPTPLYRAKRLSEYLGGAKIYLKREDLNHTGAHKINNALGQALLAKRMGK-----KRVIAETGAGQHGVA 97 (365)
T ss_pred HHHHhhccCCCCCCceehHHHHHhhCCceEEEEeccCCCccchhHHHHHHHHHHHHHcCC-----CeEEEecCchHHHHH
Confidence 4445555554 89999999999877 5799999999999999999999999999998886 34555 689999999
Q ss_pred HHHHHHHcCCeEEEEecCCCC---HHHHHHHHHcCCEEEEeCCCC-ChhHHHHHHHHH-HHhC-CCeEEcCCCC----CC
Q 020805 85 LAFMAAAKQYRLIITMPASMS---LERRIILRAFGAELVLTDPAK-GMKGAVQKAEEI-LAKT-PNAYMLQQFE----NP 154 (321)
Q Consensus 85 lA~aa~~~G~~~~ivvp~~~~---~~~~~~~~~~Ga~v~~~~~~~-~~~~~~~~a~~~-~~~~-~~~~~~~~~~----~~ 154 (321)
+|++|+++|++|+||+|+..+ +.|+++++.+||+|+.++... .++++...+.+. .++. +.+|+++++. ++
T Consensus 98 lA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~~~~GAeV~~~~~~~~~~~~~~~~a~~~~~~~~~~~~y~~~~~~~~~~~~ 177 (365)
T cd06446 98 TATACALFGLECEIYMGAVDVERQPLNVFRMELLGAEVVPVPSGSGTLKDAISEAIRDWVTNVEDTHYLLGSVVGPHPYP 177 (365)
T ss_pred HHHHHHHhCCCeEEEEcCCccccccchHHHHHHCCCEEEEeCCCCCcHHHHHHHHHHHHHhccCCceEecccccCCCCch
Confidence 999999999999999998643 367889999999999998642 345555444333 4332 2344444331 23
Q ss_pred cchhhhhhchHHHHHhhhC----CCCCEEEEecCCchhHHHHHHHHHhcCCCcEEEEEecCCCCccCCC--------CCC
Q 020805 155 ANPKIHYETTGPELWKGSG----GRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGG--------KPG 222 (321)
Q Consensus 155 ~~~~~g~~~~~~Ei~~ql~----~~~d~vv~p~G~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~g--------~~~ 222 (321)
.++++|++|+++||++|++ ..||+||+|+|+|||++|++++++. .++++||+|||++++.+.+. ...
T Consensus 178 ~~~~ag~~t~~~EI~~Q~~~~~~~~~D~vv~~vG~GGt~~Gi~~g~~~-~~~~~vigVep~gs~~~~~~~~~~~~~g~~~ 256 (365)
T cd06446 178 NMVRDFQSVIGEEAKKQILEKEGELPDVVIACVGGGSNAAGLFYPFIN-DKDVKLIGVEAGGCGLETGGHAAYLFGGTAG 256 (365)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCCCEEEEecCccHHHHHHHHHHHh-CCCceEEEEcCCCCccccccceeeccCCCcc
Confidence 3568899999999999995 2699999999999999999998877 46899999999998776421 110
Q ss_pred --------------------CcccccccCCC-Cc--ccccccccCEEEEeCHHHHHHHHHHHHHhcCCeEecchHHHHHH
Q 020805 223 --------------------PHKIQGIGAGF-VP--GVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAA 279 (321)
Q Consensus 223 --------------------~~~~~gl~~~~-~~--~~~~~~~~d~~~~V~d~e~~~a~~~l~~~~Gi~~~pss~~a~aa 279 (321)
.+...+++... .+ +.+..+.+|+++.|+|+|+++++++|++++|+++||+||+++++
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~t~a~gl~~~~~~~~~~~~~~~~~d~~v~V~d~e~~~a~r~la~~eGi~~epssgaalAa 336 (365)
T cd06446 257 VLHGLKMYTLQDEDGQIVPPHSISAGLDYPGVGPEHAYLKDSGRVEYVAVTDEEALEAFKLLARTEGIIPALESSHAIAY 336 (365)
T ss_pred eecchhhhccccccCCCCCcccccccccCCCCCHHHHHHHHhCCceEEEeChHHHHHHHHHHHHhcCceeCccchHHHHH
Confidence 01123343221 11 12445678999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCEEEEEecC-CCCCCHH
Q 020805 280 AIEIAKRPENAGKLIVVCSQF-ACITSDS 307 (321)
Q Consensus 280 ~~~~~~~~~~~~~~vv~i~tg-g~~~~~~ 307 (321)
++++.++. .++++||+|+|| |+.|.+.
T Consensus 337 ~~~~~~~~-~~~~~Vv~i~~g~G~k~~~~ 364 (365)
T cd06446 337 AIKLAKKL-GKEKVIVVNLSGRGDKDLQT 364 (365)
T ss_pred HHHHHHhc-CCCCeEEEEeCCCCcccccc
Confidence 99988765 367899999999 8887653
No 65
>KOG1481 consensus Cysteine synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=2.1e-53 Score=364.72 Aligned_cols=306 Identities=37% Similarity=0.551 Sum_probs=263.1
Q ss_pred hhhhhhhccCCcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHH
Q 020805 9 AKDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFM 88 (321)
Q Consensus 9 ~~~i~~~~~~TPL~~~~~l~~~~g~~v~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~AlA~a 88 (321)
.+-+...+|+|||++++.|++..|++||.|.|.+||.||.|||.|.+++..|++.|++.+| -.|++.|+||+|+++|..
T Consensus 40 ~~Gv~~~IGnTpliri~sLs~aTGcnIlaK~Ef~NPggS~KDRvAl~iir~Aee~GkL~~g-g~v~EGtaGsTgIslA~v 118 (391)
T KOG1481|consen 40 VSGVEGAIGNTPLIRINSLSNATGCNILAKAEFLNPGGSVKDRVALYIIRTAEEKGKLVRG-GTVVEGTAGSTGISLAHV 118 (391)
T ss_pred cchhHHhhCCCceEEeeccccccccchhhhhhccCCCCChhhhhHHHHHHHHHHcCCcccC-ceEEecCCCccchhHHHh
Confidence 3356788999999999999999999999999999999999999999999999999999998 469999999999999999
Q ss_pred HHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCC------hhHHHHHHHHHHHhCC--CeEEcCCCCCCcchhhh
Q 020805 89 AAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKG------MKGAVQKAEEILAKTP--NAYMLQQFENPANPKIH 160 (321)
Q Consensus 89 a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~------~~~~~~~a~~~~~~~~--~~~~~~~~~~~~~~~~g 160 (321)
|+.+|++|+|+||++.+.+|.+.++.+||+|..|++..- ...+.+.+.++..+.. ..+|.+||+|+.||..|
T Consensus 119 ~~a~Gyk~~I~mPddqs~eK~~ile~LGA~V~rV~pa~i~dp~~yvn~Arr~an~~~~~~ngi~g~fAdQFeN~AN~~aH 198 (391)
T KOG1481|consen 119 ARALGYKCHIYMPDDQSQEKSDILEFLGAEVHRVPPAPIVDPNHYVNQARRAANETPNASNGIRGWFADQFENVANWLAH 198 (391)
T ss_pred hhhcCcceEEECCChHHHHHHHHHHHhcceeeecCCcCccChhHHHHHHHHHhhhcccccCCcccchhhhhcCHHHHHHH
Confidence 999999999999999999999999999999999986421 1234444444443332 24678999999999999
Q ss_pred hhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHHhcCCC-cEEEEEecCCCCccCC-------------CCC----C
Q 020805 161 YETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPN-IKLYGIEPTESPVLSG-------------GKP----G 222 (321)
Q Consensus 161 ~~~~~~Ei~~ql~~~~d~vv~p~G~Gg~~aGi~~~~k~~~~~-~~vigv~~~~~~~~~~-------------g~~----~ 222 (321)
|.++|+|||.|..+++|++++.+|||||++|+.+++|+..+. +.++..+|.++..+.. |.. .
T Consensus 199 yetTGPEIw~QtkGniDaFia~~GTGGTiaGVskyLkek~~~~v~~~laDPpGSGlYnkV~~GVmy~~~e~eG~r~r~q~ 278 (391)
T KOG1481|consen 199 YETTGPEIWHQTKGNIDAFIAGTGTGGTIAGVSKYLKEKSDGRVAVFLADPPGSGLYNKVNYGVMYDHIETEGTRRRNQV 278 (391)
T ss_pred hcCcCcHHHHhhcCCcceEEeccCCCcchHHHHHHHhhcCCCceEEEEeCCCCCchhhhhhhhhhhhhhhhcCcccCCCc
Confidence 999999999999999999999999999999999999999876 8999999999954321 221 2
Q ss_pred CcccccccCCCCcccc--cccccCEEEEeCHHHHHHHHHHHHHhcCCeEecchHHHHHHHHHHHhcCCCCCCEEEEEecC
Q 020805 223 PHKIQGIGAGFVPGVL--EVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVCSQF 300 (321)
Q Consensus 223 ~~~~~gl~~~~~~~~~--~~~~~d~~~~V~d~e~~~a~~~l~~~~Gi~~~pss~~a~aa~~~~~~~~~~~~~~vv~i~tg 300 (321)
.+..+|+|...++.++ ..+.+|+.+.|+|++++++.+.|..++|+|++.||+.+..+++++++.. .+|.+||+|+|+
T Consensus 279 dti~EGIGinRiT~Nf~m~~~liD~a~rv~Deqai~Msr~Ll~~dGLFvGsSsa~N~VaAv~vAk~L-gpG~~iVtilCD 357 (391)
T KOG1481|consen 279 DTITEGIGINRITGNFQMAEDLIDDAMRVTDEQAINMSRYLLDNDGLFVGSSSALNCVAAVRVAKTL-GPGHTIVTILCD 357 (391)
T ss_pred chhhhcccccccccccccchhhhhhheecChHHHHHHHHHhhhcCceEecchhhHHHHHHHHHHHhc-CCCceEEEEEeC
Confidence 3455788877666554 4677999999999999999999999999999999999999999998876 589999999999
Q ss_pred C------CCCCHHHHHhhcCCc
Q 020805 301 A------CITSDSWLIAITCMS 316 (321)
Q Consensus 301 g------~~~~~~~~~~~~~~~ 316 (321)
. .+..+.|++.+...+
T Consensus 358 sG~rh~sk~~~~~~l~~~~l~p 379 (391)
T KOG1481|consen 358 SGSRHLSKLFSESFLESKKLSP 379 (391)
T ss_pred CcchHHHHhcCHHHHhhcCCCc
Confidence 3 355677777766554
No 66
>TIGR00263 trpB tryptophan synthase, beta subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. the beta chain contains the functional domain for or the synthesis of tryptophan from indole and serine. The enzyme requires pyridoxal-phosphate as a cofactor. The pyridoxal-P attachment site is contained within the conserved region [LIVM]-x-H-x-G-[STA]-H-K-x-N] [K is the pyridoxal-P attachment site] which is present between residues 90-100 of the model.
Probab=100.00 E-value=2.2e-52 Score=392.40 Aligned_cols=294 Identities=21% Similarity=0.217 Sum_probs=229.9
Q ss_pred hhhhhcc-CCcceecccccCCCC-ceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHH
Q 020805 11 DVTELIG-NTPLVYLNNIVNGCV-ARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFM 88 (321)
Q Consensus 11 ~i~~~~~-~TPL~~~~~l~~~~g-~~v~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~AlA~a 88 (321)
.+..+++ +|||+++++|++.+| .+||+|+|++|||||||||++..++..+.+.|. ...|+++|+||||+|+|++
T Consensus 42 ~~~~~~~~~TPL~~~~~l~~~~g~~~iy~K~E~~nptGS~K~R~a~~~~~~a~~~g~----~~vi~e~ssGN~G~alA~~ 117 (385)
T TIGR00263 42 LLRNYAGRPTPLTFAPNLTEALGGAKIYLKREDLNHTGAHKINNALGQALLAKRMGK----KRIIAETGAGQHGVATATA 117 (385)
T ss_pred HHHHhCCCCCCceehHHHHHHhCCCeEEEEeCCCCCCccchHHHHHHHHHHHHHcCC----CEEEEEcCcHHHHHHHHHH
Confidence 4455565 899999999998777 799999999999999999999999999988875 2445579999999999999
Q ss_pred HHHcCCeEEEEecCC-CCH--HHHHHHHHcCCEEEEeCCC-CChhHHH-HHHHHHHHhCCCeEEc-CCCCC----Ccchh
Q 020805 89 AAAKQYRLIITMPAS-MSL--ERRIILRAFGAELVLTDPA-KGMKGAV-QKAEEILAKTPNAYML-QQFEN----PANPK 158 (321)
Q Consensus 89 a~~~G~~~~ivvp~~-~~~--~~~~~~~~~Ga~v~~~~~~-~~~~~~~-~~a~~~~~~~~~~~~~-~~~~~----~~~~~ 158 (321)
|+++|++|+||||+. .+. .++++++.+||+|+.++.. ..++++. +.+++++++.++.+|+ +++.+ +.++.
T Consensus 118 a~~~Gl~~~Iv~p~~~~~~~~~~~~~~~~~GA~Vv~v~~~~~~~~~a~~~~~~~~~~~~~~~~y~~~~~~~~~p~~~~~~ 197 (385)
T TIGR00263 118 AALLGLDCEVYMGAEDVERQKPNVFRMELLGAKVIPVTSGSGTLKDAVNEALRDWVTSVDDTHYVLGSAVGPHPFPTMVR 197 (385)
T ss_pred HHHcCCCEEEEecCCcccccchHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCceEEeCCcCCCCCchHHHH
Confidence 999999999999985 443 5788999999999999853 3456664 4455556554455555 44433 23446
Q ss_pred hhhhchHHHHHhhhC----CCCCEEEEecCCchhHHHHHHHHHhcCCCcEEEEEecCCCC--------ccCCCCCC----
Q 020805 159 IHYETTGPELWKGSG----GRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESP--------VLSGGKPG---- 222 (321)
Q Consensus 159 ~g~~~~~~Ei~~ql~----~~~d~vv~p~G~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~--------~~~~g~~~---- 222 (321)
.|++|++.||++|+. ..||+||+|+|+||+++|++.++.. .|+++||+|||+++. .+..+.+.
T Consensus 198 ~~~~t~g~Ei~~Ql~~~~~~~pD~vv~~vG~Gg~~~Gv~~~~~~-~~~~~iigVe~~gs~~~~~~~~~~~~~g~~~~~~~ 276 (385)
T TIGR00263 198 DFQSVIGEEAKEQILEQEGRLPDAVIACVGGGSNAIGIFYAFID-DPSVQLIGVEAGGLGIDTDKHAATLAKGSPGVLHG 276 (385)
T ss_pred HHhhHHHHHHHHHHHhhhCCCCCEEEEEeCchHHHHHHHHHHhh-CCCCeEEEEEeCCCcccchhhhhhhhcCCeeEecC
Confidence 899999999999983 2589999999999999999998855 699999999999862 22223221
Q ss_pred ----------------CcccccccCCCC-c--ccccccccCEEEEeCHHHHHHHHHHHHHhcCCeEecchHHHHHHHHHH
Q 020805 223 ----------------PHKIQGIGAGFV-P--GVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEI 283 (321)
Q Consensus 223 ----------------~~~~~gl~~~~~-~--~~~~~~~~d~~~~V~d~e~~~a~~~l~~~~Gi~~~pss~~a~aa~~~~ 283 (321)
.+...|+..... | +.+.....|+++.|+|+|+++++++|++++|++++|+||+++++++++
T Consensus 277 ~~~~~~~~~~~~~~~~~tia~gl~~~~~~p~~~~~~~~~~~~~v~Vsd~e~~~a~~~la~~egi~~~~ssaaalaa~~~~ 356 (385)
T TIGR00263 277 MKTYLLQDEDGQILEAHSVSAGLDYPGVGPEHAYLHETGRATYEAITDDEALEAFKLLSRNEGIIPALESSHALAHLEKI 356 (385)
T ss_pred cccccccCCCCcccccceeeccccCCCCCHHHHHHHhcCCeEEEEECHHHHHHHHHHHHHhcCCeechHHHHHHHHHHHH
Confidence 011233322211 1 223345578899999999999999999999999999999999999998
Q ss_pred HhcCCCCCCEEEEEecC-CCCCCHHHHH
Q 020805 284 AKRPENAGKLIVVCSQF-ACITSDSWLI 310 (321)
Q Consensus 284 ~~~~~~~~~~vv~i~tg-g~~~~~~~~~ 310 (321)
+++. .++++||+++|| |+.|.+.+.+
T Consensus 357 ~~~l-~~~~~Vv~i~~g~G~~d~~~~~~ 383 (385)
T TIGR00263 357 APTL-PKDQIVVVNLSGRGDKDIFTIAK 383 (385)
T ss_pred HHhC-CCCCeEEEEeCCCCcCCHHHHHh
Confidence 7653 368899999999 8999887643
No 67
>TIGR01275 ACC_deam_rel pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family. This model represents a family of pyridoxal phosphate-dependent enzymes closely related to (and often designated as putative examples of) 1-aminocyclopropane-1-carboxylate deaminase. It appears that members of this family include both D-cysteine desulfhydrase (EC 4.4.1.15) and 1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7).
Probab=100.00 E-value=2.6e-53 Score=390.01 Aligned_cols=287 Identities=18% Similarity=0.124 Sum_probs=230.4
Q ss_pred hccCCcceecccccCCCCceEEEEeCCCCCC--CchhhHHHHHHHHHHHHcCCCCCCCeEEEee--CCChHHHHHHHHHH
Q 020805 15 LIGNTPLVYLNNIVNGCVARIAAKLEMMEPC--SSVKDRIGYSMISDAEAKGLITPGESVLIEP--TSGNTGIGLAFMAA 90 (321)
Q Consensus 15 ~~~~TPL~~~~~l~~~~g~~v~~K~E~~~pt--GS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~--SsGN~g~AlA~aa~ 90 (321)
...+|||+++++|+...|.+||+|+|++||| ||||||++.+++.+++++|. ++||++ |+||||+|+|++|+
T Consensus 4 ~~~~TPl~~~~~l~~~~g~~l~~K~E~l~p~~~gs~K~R~~~~~l~~a~~~g~-----~~vv~~g~ssGN~g~alA~~a~ 78 (311)
T TIGR01275 4 IPWPTPIQYLPRISREIGAEIYIKRDDLTGLGIGGNKIRKLEYLLADALSKGA-----DTVITVGAIQSNHARATALAAK 78 (311)
T ss_pred CCCCCcceechhhhhhcCCeEEEEeccCcCCCCCchhHHHHHHHHHHHHHcCC-----CEEEEcCCchhHHHHHHHHHHH
Confidence 4478999999999987788999999999998 99999999999999999986 679998 55999999999999
Q ss_pred HcCCeEEEEecCCC-CHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHH----hCC-CeEEcCCCCCCcchhhhhhch
Q 020805 91 AKQYRLIITMPASM-SLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILA----KTP-NAYMLQQFENPANPKIHYETT 164 (321)
Q Consensus 91 ~~G~~~~ivvp~~~-~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~----~~~-~~~~~~~~~~~~~~~~g~~~~ 164 (321)
++|++|++|||+.. +..+..+++.|||+|+.++.. ++++..+.++++++ +.+ .+++.+++.|+.+ ..|+.++
T Consensus 79 ~~G~~~~ivvp~~~~~~~~~~~~~~~Ga~v~~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~g~~~~ 156 (311)
T TIGR01275 79 KLGLDAVLVLREKEELNGNLLLDKLMGAETRVYSAE-EYFEIMKYAEELAEELEKEGRKPYVIPVGGSNSLG-TLGYVEA 156 (311)
T ss_pred HhCCceEEEecCCccCCCCHHHHHHcCCEEEEECch-hhhhhHHHHHHHHHHHHhcCCCeEEECCCCCcHHH-HHHHHHH
Confidence 99999999999975 456677789999999999852 23344444444433 222 2445577788877 4667779
Q ss_pred HHHHHhhhCC--CCCEEEEecCCchhHHHHHHHHHhcCCCcEEEEEecCCCCccCCCC---CCCcccccccCC-CCcccc
Q 020805 165 GPELWKGSGG--RIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGK---PGPHKIQGIGAG-FVPGVL 238 (321)
Q Consensus 165 ~~Ei~~ql~~--~~d~vv~p~G~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~g~---~~~~~~~gl~~~-~~~~~~ 238 (321)
++||++|+++ .||+||+|+|||||++|+++++|+.+|+++||||+++.+....... ...+..++++.+ ...+.+
T Consensus 157 ~~EI~~q~~~~~~~D~vv~~vGtGgt~~Gi~~~lk~~~~~~~vigV~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 236 (311)
T TIGR01275 157 VLEIATQLESEVKFDSIVVAAGSGGTIAGLSLGLSILNEDIRPVGVAVGRFGEDMTDKFVNLVKEIAEGLEVKASEVIPE 236 (311)
T ss_pred HHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCcEEEEEecccHHHHHHHHHHHHHHHHHHhCCCCCCCEEE
Confidence 9999999963 7999999999999999999999999999999999987653211100 011233455543 223445
Q ss_pred cccccCEEEEeCHHHHHHHHHHHHHhcCCeEec-chHHHHHHHHHHHhcCCCCCCEEEEEecCCCCCCHHH
Q 020805 239 EVNIIDEVVQVSSDEAIETAKLLALKEGLFVGI-SSGGAAAAAIEIAKRPENAGKLIVVCSQFACITSDSW 308 (321)
Q Consensus 239 ~~~~~d~~~~V~d~e~~~a~~~l~~~~Gi~~~p-ss~~a~aa~~~~~~~~~~~~~~vv~i~tgg~~~~~~~ 308 (321)
..+..+..+.|+|+|+++++++|++++|+++|| |||++++++++++++...++++||+||||||.-...+
T Consensus 237 ~~~~~~~~~~v~d~e~~~~~~~la~~~gi~vep~~sg~~~aa~~~~~~~~~~~~~~vv~i~tGG~~g~~~~ 307 (311)
T TIGR01275 237 LDDYSGPGYGKPTSEVAEIVKKVASREGIILDPVYTGKAFYGLIDLIRKGELGEKGILFIHTGGISGLFAY 307 (311)
T ss_pred ECCcccCcCCCCCHHHHHHHHHHHHHhCCccCcchHHHHHHHHHHHHHhCCCCCCCEEEEECCCccccccc
Confidence 566788899999999999999999999999999 6999999999988766556789999999998765443
No 68
>PRK12391 tryptophan synthase subunit beta; Reviewed
Probab=100.00 E-value=1.1e-51 Score=389.83 Aligned_cols=293 Identities=23% Similarity=0.248 Sum_probs=235.4
Q ss_pred hhhccCCcceecccccCCCC--ceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEe-eCCChHHHHHHHHH
Q 020805 13 TELIGNTPLVYLNNIVNGCV--ARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIE-PTSGNTGIGLAFMA 89 (321)
Q Consensus 13 ~~~~~~TPL~~~~~l~~~~g--~~v~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~-~SsGN~g~AlA~aa 89 (321)
....++|||+++++|++.+| ++||+|+|++|||||||+|++..++..+.++|. ..+++ .|+||||+|+|++|
T Consensus 72 ~~~~~~TPL~~~~~L~~~lg~~~~Iy~K~E~~nPtGS~K~R~A~~~a~~a~~~G~-----~~~vtetgsGN~G~alA~aa 146 (427)
T PRK12391 72 YRLWRPTPLIRARRLEKALGTPAKIYYKYEGVSPTGSHKPNTAVAQAYYNKKEGI-----KRLTTETGAGQWGSALALAC 146 (427)
T ss_pred HcccCCCCeeEchhhHhhhCCCceEEEEEcCCCCCCChHHHHHHHHHHHHHHCCC-----CEEEEccCchHHHHHHHHHH
Confidence 35678999999999998766 699999999999999999999999999999986 45665 57899999999999
Q ss_pred HHcCCeEEEEecCC---CCHHHHHHHHHcCCEEEEeCCCCC----------------hhHHHHHHHHHHHhCCCeEEcCC
Q 020805 90 AAKQYRLIITMPAS---MSLERRIILRAFGAELVLTDPAKG----------------MKGAVQKAEEILAKTPNAYMLQQ 150 (321)
Q Consensus 90 ~~~G~~~~ivvp~~---~~~~~~~~~~~~Ga~v~~~~~~~~----------------~~~~~~~a~~~~~~~~~~~~~~~ 150 (321)
+++|++|+||||+. .++.|+.+|+.|||+|+.++++.. ...++..+.+.+++.++.+|+..
T Consensus 147 a~~Gl~~~V~mp~~s~~~k~~r~~~mr~~GA~Vi~~~~~~~~~~~~~~~~~~~~~gsl~~ai~~A~e~a~~~~~~~y~~~ 226 (427)
T PRK12391 147 ALFGLECTVFMVRVSYEQKPYRRSLMETYGAEVIPSPSDLTEAGRKILAEDPDHPGSLGIAISEAVEDAAKRPDTKYALG 226 (427)
T ss_pred HHcCCcEEEEEecCCcccCHHHHHHHHHCCCEEEEECCchhhhhhhhhhcCccccccHHHHHHHHHHHHHhCCCcEEEcC
Confidence 99999999999974 367889999999999999986321 11245666777666545445544
Q ss_pred CCCCcchhhhhhchHHHHHhhhC---CCCCEEEEecCCchhHHHHHHHHH---hcC-CCcEEEEEecCCCCccCCCCC--
Q 020805 151 FENPANPKIHYETTGPELWKGSG---GRIDALVSGIGTGGTITGAGKFLK---EKN-PNIKLYGIEPTESPVLSGGKP-- 221 (321)
Q Consensus 151 ~~~~~~~~~g~~~~~~Ei~~ql~---~~~d~vv~p~G~Gg~~aGi~~~~k---~~~-~~~~vigv~~~~~~~~~~g~~-- 221 (321)
+. ..+.+.||.++|+||++|+. ..||+||+|+|+||+++|++.+|. ..+ +++|||+|||++++++..+..
T Consensus 227 s~-~~~~~~~~~~ig~Ei~~Ql~~~g~~pD~Vv~~vG~Gg~~aGi~~~f~~~~~~g~~~~riiaVEp~~~~~l~~g~~~~ 305 (427)
T PRK12391 227 SV-LNHVLLHQTVIGLEAKKQLELAGEYPDVVIGCVGGGSNFAGLAFPFLGDKLEGKKDTRFIAVEPAACPTLTKGEYAY 305 (427)
T ss_pred CC-CcHHHhhHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHHHHHHHHHHhcCCCCceEEEEeeccchhhccccccc
Confidence 33 23457899999999999995 369999999999999999999773 234 889999999999988764321
Q ss_pred --------CC-cccccccCCCCccccc-----------------ccccCEEEEeCHHHHHHHHHHHHHhcCCeEecchHH
Q 020805 222 --------GP-HKIQGIGAGFVPGVLE-----------------VNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGG 275 (321)
Q Consensus 222 --------~~-~~~~gl~~~~~~~~~~-----------------~~~~d~~~~V~d~e~~~a~~~l~~~~Gi~~~pss~~ 275 (321)
.+ ..+.+++.+++|..+. ...+++.+.|+|+|+++++++|++.|||+++|+||+
T Consensus 306 ~~gd~~~~~p~~~~~~lG~~~~p~~~~a~gl~~~g~~~~~~~l~~~~~~~~~~V~d~e~~~a~~~~a~~eGi~~~pss~~ 385 (427)
T PRK12391 306 DFGDTAGLTPLLKMYTLGHDFVPPPIHAGGLRYHGMAPLVSLLVHEGLIEARAYPQTEVFEAAVLFARTEGIVPAPESSH 385 (427)
T ss_pred cccccccCCccceeEecCCCCCCccccccccccCCchHHHHHHHhcCceEEEEECHHHHHHHHHHHHHHcCCeechHHHH
Confidence 11 2356777665544321 233458899999999999999999999999999999
Q ss_pred HHHHHHHHHhcCC--CCCCEEEEEecC-CCCCCHHHHHh
Q 020805 276 AAAAAIEIAKRPE--NAGKLIVVCSQF-ACITSDSWLIA 311 (321)
Q Consensus 276 a~aa~~~~~~~~~--~~~~~vv~i~tg-g~~~~~~~~~~ 311 (321)
+++++++++++.. .++++||+++|| |+++.+.|-+.
T Consensus 386 alaaa~~~a~~~~~~~~~~~iv~~lsG~G~~d~~~y~~~ 424 (427)
T PRK12391 386 AIAAAIDEALKAKEEGEEKVILFNLSGHGLLDLAAYDAY 424 (427)
T ss_pred HHHHHHHHHHhccccCCCCEEEEEeCCCCCCCHHHHHHH
Confidence 9999999887543 347899999999 99998777653
No 69
>TIGR03844 cysteate_syn cysteate synthase. Members of this family are cysteate synthase, an enzyme of alternate pathway to sulfopyruvate, a precursor of coenzyme M.
Probab=100.00 E-value=2.6e-52 Score=391.96 Aligned_cols=294 Identities=15% Similarity=0.042 Sum_probs=237.8
Q ss_pred hhhccCCcceecccccCCCCc-eEEEE-------eCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHH
Q 020805 13 TELIGNTPLVYLNNIVNGCVA-RIAAK-------LEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIG 84 (321)
Q Consensus 13 ~~~~~~TPL~~~~~l~~~~g~-~v~~K-------~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~A 84 (321)
....|.|||+++++|++.+|. +||+| +|++|||||||||++.+++..+.+.|. +.|+++|+||||+|
T Consensus 57 ~~~~g~tpl~~~~~L~~~lG~~~v~~K~e~~~~K~E~~npTGSFKdRga~~~i~~a~~~g~-----~~Vv~aSsGN~g~a 131 (398)
T TIGR03844 57 LRTRGGPVTYKSEGLARELGLSDLYITFSGYWPERGAFMRTCSFKELEALPTMQRLKERGG-----KTLVVASAGNTGRA 131 (398)
T ss_pred CCCCCCCceeehHHHHHHhCCCeEEEEecCcccchhccCCccccHHHHHHHHHHHHHHcCC-----CEEEEECCCHHHHH
Confidence 346678999999999988887 99995 555899999999999999999998875 77999999999999
Q ss_pred HHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEcCCCCCCcchhhhhhch
Q 020805 85 LAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETT 164 (321)
Q Consensus 85 lA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 164 (321)
+|++|+++|++|+||||++++..+...++.+|++|+.+++ +++++.+.+++++++. +++..++++||.. ++|++|+
T Consensus 132 lA~~aa~~Gi~~~I~vP~~~~~~~~~~~~~~ga~vv~v~g--~~d~a~~~a~~~a~~~-g~~~~~~~~~p~~-ieG~~Ti 207 (398)
T TIGR03844 132 FAEVSAITGQPVILVVPKSSADRLWTTEPASSVLLVTVDG--DYTDAIALADRIATLP-GFVPEGGARNVAR-RDGMGTV 207 (398)
T ss_pred HHHHHHHcCCcEEEEECCChHHHHHHHhhCCcEEEEECCC--CHHHHHHHHHHHHHhC-CccccCCCCCHHH-HhhHHHH
Confidence 9999999999999999998654444445789999999986 5789999999998875 6654456677776 7999999
Q ss_pred HHHHHhhhCCCCCEEEEecCCchhHHHHHHHHHhcC-------CCcEEEEEecCCCCccC----CCCCC-----------
Q 020805 165 GPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKN-------PNIKLYGIEPTESPVLS----GGKPG----------- 222 (321)
Q Consensus 165 ~~Ei~~ql~~~~d~vv~p~G~Gg~~aGi~~~~k~~~-------~~~~vigv~~~~~~~~~----~g~~~----------- 222 (321)
++||++|++..||+||+|+|+|+++.|++.+++++. .-+++++||+++++++. .+...
T Consensus 208 ~~Ei~eql~~~PD~VvvPvG~G~~~~~~~~~~~~l~~~g~i~~~~P~l~~VQ~eg~~p~~~a~~~g~~~~~~~~~~~~~~ 287 (398)
T TIGR03844 208 MLDAAVTIGSLPDHYFQAVGSGTGGIAAWEAAMRLIEDGRFGSKLPRLHLAQNLPFVPMVNAWQEGRREIIPESDMPDAE 287 (398)
T ss_pred HHHHHHHcCCCCCEEEEecCCCHHHHHHHHHHHHHHHcCCccCCCCCEEEEEcCCchHHHHHHHcCCCccccccCCcccc
Confidence 999999996449999999999988999999888742 23688999999997653 33321
Q ss_pred ----CcccccccCCCCcc-------cccccccCEEEEeCHHHHHHHHHHHHHhcCCeEecchHHHHHHHHHHHhcCC-CC
Q 020805 223 ----PHKIQGIGAGFVPG-------VLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPE-NA 290 (321)
Q Consensus 223 ----~~~~~gl~~~~~~~-------~~~~~~~d~~~~V~d~e~~~a~~~l~~~~Gi~~~pss~~a~aa~~~~~~~~~-~~ 290 (321)
.+..+++..+..+. ...++..++++.|+|+||.+++++|++++|+++||+||+++|+++++.+++. .+
T Consensus 288 ~~~~~t~a~~l~i~~p~~~~~~~~l~air~~~g~~v~Vsd~eI~~A~~~l~~~~gi~vEpa~A~alAal~k~~~~g~i~~ 367 (398)
T TIGR03844 288 NSIEEVYSDVLTNRTPPYGVTGGVFDALIATGGQMYGVSNKEAVSAGKLFEESEGIDILPAAAVAVAALVKAVESGFIGP 367 (398)
T ss_pred ccccceecceeeeCCCCcchHHHHHHHHHHhCCEEEEECHHHHHHHHHHHHhhCCccccccHHHHHHHHHHHHHhCCCCC
Confidence 12335554333222 2235678899999999999999999999999999999999999999988765 47
Q ss_pred CCEEEEEecCCCCCCHHHHHhhcCCcc
Q 020805 291 GKLIVVCSQFACITSDSWLIAITCMSF 317 (321)
Q Consensus 291 ~~~vv~i~tgg~~~~~~~~~~~~~~~~ 317 (321)
+++||+++||+++. ++.+.+..+.+
T Consensus 368 ~~~Vv~vlTG~glK--~~~~~~~~~~~ 392 (398)
T TIGR03844 368 DDDILLNITGGGYK--RLREDLPRYQI 392 (398)
T ss_pred CCeEEEEECCcchh--hHHhhCceeec
Confidence 89999999998743 33444444433
No 70
>PRK04346 tryptophan synthase subunit beta; Validated
Probab=100.00 E-value=1.5e-51 Score=384.73 Aligned_cols=296 Identities=23% Similarity=0.256 Sum_probs=231.1
Q ss_pred hhhhhcc-CCcceecccccCCC-CceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHH
Q 020805 11 DVTELIG-NTPLVYLNNIVNGC-VARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFM 88 (321)
Q Consensus 11 ~i~~~~~-~TPL~~~~~l~~~~-g~~v~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~AlA~a 88 (321)
-+.+++| +|||+++++|++.+ +++||+|+|++|||||||+|++..++..|.+.|+ .+.|+++|+||||+|+|++
T Consensus 50 ~~~~~~grpTPL~~~~~Ls~~~gg~~IylK~EdlnptGS~K~r~al~~~l~A~~~Gk----~~vIaetgaGnhG~A~A~~ 125 (397)
T PRK04346 50 LLKNYVGRPTPLYFAERLSEHLGGAKIYLKREDLNHTGAHKINNVLGQALLAKRMGK----KRIIAETGAGQHGVATATA 125 (397)
T ss_pred HHHHhcCCCCCceEhHHHHHHcCCCeEEEEECCCCCccchHHHHHHHHHHHHHHcCC----CeEEEecCcHHHHHHHHHH
Confidence 3556787 59999999999888 5899999999999999999999999999999886 2456668999999999999
Q ss_pred HHHcCCeEEEEecCCC-C--HHHHHHHHHcCCEEEEeCC-CCChhHHHHHH-HHHHHhCCCeEEc-CCCCCC----cchh
Q 020805 89 AAAKQYRLIITMPASM-S--LERRIILRAFGAELVLTDP-AKGMKGAVQKA-EEILAKTPNAYML-QQFENP----ANPK 158 (321)
Q Consensus 89 a~~~G~~~~ivvp~~~-~--~~~~~~~~~~Ga~v~~~~~-~~~~~~~~~~a-~~~~~~~~~~~~~-~~~~~~----~~~~ 158 (321)
|+++|++|+||||+.. + ..|+.+|+.+||+|+.++. ...++++.+.+ +++.++.++.+|+ .+..+| .+..
T Consensus 126 aa~~Gl~c~I~mp~~d~~rq~~nv~~m~~lGA~Vv~v~~g~~~l~da~~ea~~~~~~~~~~~~y~~gs~~gphp~p~~v~ 205 (397)
T PRK04346 126 AALLGLECVIYMGAEDVERQALNVFRMKLLGAEVVPVTSGSRTLKDAVNEALRDWVTNVEDTHYLIGSVAGPHPYPTMVR 205 (397)
T ss_pred HHHcCCcEEEEecCCchhhhhhHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEeCCcCCCCCchHHHH
Confidence 9999999999999853 3 3578899999999999985 33455555544 4456553344444 333332 3335
Q ss_pred hhhhchHHHHHhhhC----CCCCEEEEecCCchhHHHHHHHHHhcCCCcEEEEEecCCCC--------ccCCCCCC----
Q 020805 159 IHYETTGPELWKGSG----GRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESP--------VLSGGKPG---- 222 (321)
Q Consensus 159 ~g~~~~~~Ei~~ql~----~~~d~vv~p~G~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~--------~~~~g~~~---- 222 (321)
.||++++.||.+|+. ..||+||+|+|+||+++|+..+|+. .|+++||||||.++. ++..+++.
T Consensus 206 ~~q~tig~Ei~eQ~~~~~g~~pD~vVa~VGgGg~~~Gi~~~f~~-~~~v~iigVE~~G~~~~~~~~~a~l~~g~~g~~~g 284 (397)
T PRK04346 206 DFQSVIGEEAKAQILEKEGRLPDAVVACVGGGSNAIGIFHPFID-DESVRLIGVEAAGKGLETGKHAATLTKGRPGVLHG 284 (397)
T ss_pred HhcchHHHHHHHHHHHhhCCCCCEEEEecCccHhHHHHHHHHhh-CCCCeEEEEecCCCccccccccchhhcCCeeeecc
Confidence 699999999999984 3699999999999999999999975 789999999999863 22222221
Q ss_pred ---------------Cc-ccccccCCCC-c--ccccccccCEEEEeCHHHHHHHHHHHHHhcCCeEecchHHHHHHHHHH
Q 020805 223 ---------------PH-KIQGIGAGFV-P--GVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEI 283 (321)
Q Consensus 223 ---------------~~-~~~gl~~~~~-~--~~~~~~~~d~~~~V~d~e~~~a~~~l~~~~Gi~~~pss~~a~aa~~~~ 283 (321)
++ ...||..+.+ | ..+.....++.+.|+|+|+++++++|++.|||+++++|+.++++++++
T Consensus 285 ~~~~~~~~~~g~~~~~~sis~gL~~pgvgp~~~~l~~~~~~~~v~VtD~eal~a~~~L~~~eGIi~~~esa~AlA~a~kl 364 (397)
T PRK04346 285 AKTYLLQDEDGQILETHSISAGLDYPGVGPEHAYLKDIGRAEYVSITDDEALEAFQLLSRLEGIIPALESSHALAYALKL 364 (397)
T ss_pred ccceecccCCCccCCCceeeccccCCCCCHHHHHHHhcCCeEEEEECHHHHHHHHHHHHHHcCCEeccHHHHHHHHHHHh
Confidence 11 1233332211 1 123345567899999999999999999999999999999999999998
Q ss_pred HhcCCCCCCEEEEEecC-CCCCCHHHHHhh
Q 020805 284 AKRPENAGKLIVVCSQF-ACITSDSWLIAI 312 (321)
Q Consensus 284 ~~~~~~~~~~vv~i~tg-g~~~~~~~~~~~ 312 (321)
++.. .++++||+++|| |+.|.+.+.+..
T Consensus 365 a~~l-~~~~~Vvv~lsGrG~kd~~~~~~~~ 393 (397)
T PRK04346 365 APTL-GKDQIIVVNLSGRGDKDVFTVAKLL 393 (397)
T ss_pred hhhc-CCCCeEEEEeCCCCccCHHHHHHHh
Confidence 7653 368899999999 899988876643
No 71
>PRK12390 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=100.00 E-value=1.6e-52 Score=388.32 Aligned_cols=295 Identities=17% Similarity=0.172 Sum_probs=237.6
Q ss_pred chhhhhhhhccCCcceecccccCCCC--ceEEEEeCCCCCC---CchhhHHHHHHHHHHHHcCCCCCCCeEEEee--CCC
Q 020805 7 NIAKDVTELIGNTPLVYLNNIVNGCV--ARIAAKLEMMEPC---SSVKDRIGYSMISDAEAKGLITPGESVLIEP--TSG 79 (321)
Q Consensus 7 ~~~~~i~~~~~~TPL~~~~~l~~~~g--~~v~~K~E~~~pt---GS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~--SsG 79 (321)
+-++++.+.+++|||+++++++...| .+||+|+|++||+ ||||||.+.+++.+++++|. .+|+++ |+|
T Consensus 4 ~~~~~~~l~~g~TPL~~~~~l~~~~g~~~~v~~K~E~~n~~~~~gs~K~R~~~~~l~~a~~~G~-----~~vvs~G~s~G 78 (337)
T PRK12390 4 QKFPRYPLTFGPTPIHPLKRLSAHLGGKVELYAKREDCNSGLAFGGNKTRKLEYLVPDALAQGA-----DTLVSIGGVQS 78 (337)
T ss_pred CCCCccccCCCCCcceeHHHHHHHhCCCCeEEEEeCCCCCCCCccchhHHHHHHHHHHHHHcCC-----CEEEEeCCCcc
Confidence 34557889999999999999987777 6999999999987 78899999999999999987 678887 789
Q ss_pred hHHHHHHHHHHHcCCeEEEEecCCCC--------HHHHHHHHHcCCEEEEeCCCC--ChhHHHHHHHHHHHhCCC-eEEc
Q 020805 80 NTGIGLAFMAAAKQYRLIITMPASMS--------LERRIILRAFGAELVLTDPAK--GMKGAVQKAEEILAKTPN-AYML 148 (321)
Q Consensus 80 N~g~AlA~aa~~~G~~~~ivvp~~~~--------~~~~~~~~~~Ga~v~~~~~~~--~~~~~~~~a~~~~~~~~~-~~~~ 148 (321)
|||+|+|++|+++|++|++|+|...+ ..|+.+++.|||+|+.++... .+.++.+.+.+..++..+ .|.+
T Consensus 79 N~g~alA~aa~~~G~~~~iv~~~~~p~~~~~~~~~~~~~~~~~~GA~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (337)
T PRK12390 79 NHTRQVAAVAAHLGMKCVLVQENWVNYEDAVYDRVGNILLSRIMGADVRLVPDGFDIGIRKSWEDALEDVRAAGGKPYAI 158 (337)
T ss_pred HHHHHHHHHHHHcCCeEEEEeCCCCCCccchhhccccHHHHHHCCCEEEEeCCCcchhHHHHHHHHHHHHHhCCCceEEe
Confidence 99999999999999999999877554 236779999999999998642 233566666666665334 4446
Q ss_pred CCCCCCc-chhhhhhchHHHHHhh---hCCCCCEEEEecCCchhHHHHHHHHHhcCCCcEEEEEecCCCCccCCCCC---
Q 020805 149 QQFENPA-NPKIHYETTGPELWKG---SGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKP--- 221 (321)
Q Consensus 149 ~~~~~~~-~~~~g~~~~~~Ei~~q---l~~~~d~vv~p~G~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~g~~--- 221 (321)
+++.++. ....|+.+++.||++| ++++||+||+|+|||||++|+++++|+.+|++|||+|++++++.+...+.
T Consensus 159 ~~~~~~~~~~~~G~~~~a~Ei~~q~~~~~~~~d~vvv~vGtGgtlaGi~~~~k~~~~~~rvigV~~~~~~~~~~~~~~~~ 238 (337)
T PRK12390 159 PAGASDHPLGGLGFVGFAEEVRAQEAELGFKFDYIVVCSVTGSTQAGMVVGFAADGRARRVIGIDASAKPEQTRAQVLRI 238 (337)
T ss_pred CCcCCCCCcccHHHHHHHHHHHHHHHhcCCCCCEEEEecCcchhHHHHHHHHHhcCCCceEEEEEecCchHHHHHHHHHH
Confidence 6654432 2346888889999998 44579999999999999999999999999999999999999876542211
Q ss_pred CCcccccccCCC--Cc--ccccccccCEEEEeCHHHHHHHHHHHHHhcCCeEec-chHHHHHHHHHHHhcCC-CCCCEEE
Q 020805 222 GPHKIQGIGAGF--VP--GVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGI-SSGGAAAAAIEIAKRPE-NAGKLIV 295 (321)
Q Consensus 222 ~~~~~~gl~~~~--~~--~~~~~~~~d~~~~V~d~e~~~a~~~l~~~~Gi~~~p-ss~~a~aa~~~~~~~~~-~~~~~vv 295 (321)
..+.+++++.+. .+ +.+..+++|+.+.|+|+|++++++++++++|+++|| |||+++++++++.+++. .++++||
T Consensus 239 ~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~vsd~e~~~a~~~la~~~gi~~ep~ysg~~~aa~~~~~~~g~~~~~~~vv 318 (337)
T PRK12390 239 ARNTAELVELGRDITEDDVVLDERYAGPEYGLPNEGTLEAIRLCARLEGMLTDPVYEGKSMHGMIDLVRKGEFPEGSKVL 318 (337)
T ss_pred HHHHHHHhCCCCCCChhhEEEecccccCCCCCCCHHHHHHHHHHHHhcCccccccHHHHHHHHHHHHHhcCCCCCCCeEE
Confidence 122234444332 22 235667899999999999999999999999999999 59999999999998775 5788999
Q ss_pred EEecCCCCCCH
Q 020805 296 VCSQFACITSD 306 (321)
Q Consensus 296 ~i~tgg~~~~~ 306 (321)
++||||..-..
T Consensus 319 ~~htgg~~~~~ 329 (337)
T PRK12390 319 YAHLGGVPALN 329 (337)
T ss_pred EEeCCChHhhh
Confidence 99999865443
No 72
>cd06449 ACCD Aminocyclopropane-1-carboxylate deaminase (ACCD): Pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of 1-aminocyclopropane-L-carboxylate (ACC), a precursor of the plant hormone ethylene, to alpha-ketobutyrate and ammonia.
Probab=100.00 E-value=1.9e-52 Score=383.41 Aligned_cols=277 Identities=22% Similarity=0.240 Sum_probs=225.3
Q ss_pred CcceecccccCCC--CceEEEEeCCCCCC---CchhhHHHHHHHHHHHHcCCCCCCCeEEEee--CCChHHHHHHHHHHH
Q 020805 19 TPLVYLNNIVNGC--VARIAAKLEMMEPC---SSVKDRIGYSMISDAEAKGLITPGESVLIEP--TSGNTGIGLAFMAAA 91 (321)
Q Consensus 19 TPL~~~~~l~~~~--g~~v~~K~E~~~pt---GS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~--SsGN~g~AlA~aa~~ 91 (321)
|||+++++|+..+ +.+||+|+|++||+ ||||||++.+++.+++++|. ++|+++ |+||||+|+|++|+.
T Consensus 1 TPl~~~~~l~~~~g~~~~l~~K~E~~np~gsfgs~K~R~~~~~l~~a~~~g~-----~~vv~~ggs~GN~g~alA~~a~~ 75 (307)
T cd06449 1 TPIQYLPRLSEHLGGKVEIYAKRDDCNSGLAFGGNKIRKLEYLLPDALAKGA-----DTLVTVGGIQSNHTRQVAAVAAK 75 (307)
T ss_pred CcccchhHHHHhhCCCCcEEEecccccCCCCccchHHHHHHHHHHHHHHcCC-----CEEEECCCchhHHHHHHHHHHHH
Confidence 8999999998776 57999999999999 56699999999999999887 678988 579999999999999
Q ss_pred cCCeEEEEecCCCC--------HHHHHHHHHcCCEEEEeCCCCC--hhHHHHH-HHHHHHhCCCeEE-cCCC-CCCcchh
Q 020805 92 KQYRLIITMPASMS--------LERRIILRAFGAELVLTDPAKG--MKGAVQK-AEEILAKTPNAYM-LQQF-ENPANPK 158 (321)
Q Consensus 92 ~G~~~~ivvp~~~~--------~~~~~~~~~~Ga~v~~~~~~~~--~~~~~~~-a~~~~~~~~~~~~-~~~~-~~~~~~~ 158 (321)
+|++|+||||++.+ ..|+++++.+||+|+.++.+.. ...+.+. ++++.++.+..|+ .+++ +|+.+ .
T Consensus 76 ~G~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 154 (307)
T cd06449 76 LGLKCVLVQENWVPYSDAVYDRVGNILLSRIMGADVRLVSAGFDIGIRKSFEEAAEEVEAKGGKPYVIPAGGSEHPLG-G 154 (307)
T ss_pred cCCeEEEEecCCCCcccccccccccHHHHHHCCCEEEEECCcchhhHHHHHHHHHHHHHHcCCceEEecCCCCCCccc-H
Confidence 99999999999876 4689999999999999986421 1222222 3333333323454 4454 38887 6
Q ss_pred hhhhchHHHHHhhhCC---CCCEEEEecCCchhHHHHHHHHHhcCCCcEEEEEecCCCCccCCCCCC---Cccccccc--
Q 020805 159 IHYETTGPELWKGSGG---RIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPG---PHKIQGIG-- 230 (321)
Q Consensus 159 ~g~~~~~~Ei~~ql~~---~~d~vv~p~G~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~g~~~---~~~~~gl~-- 230 (321)
.||.+++.||++|+++ .||+||+|+|||||++|+++++|+.+|.++||+|+|.+++.+...... ...+.+++
T Consensus 155 ~G~~t~~~Ei~~q~~~~~~~~d~vv~~~GtGgt~~G~~~~~~~~~~~~~ii~V~~~~~~~~~~~~~~~~~~~~~~~~g~~ 234 (307)
T cd06449 155 LGYVGFVLEIAQQEEELGFKFDSIVVCSVTGSTHAGLSVGLAALGRQRRVIGIDASAKPEKTKAQVLRIAQAKLAEEGLE 234 (307)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCEEEEeCCchHHHHHHHHHHHhcCCCCeEEEEEecCchHHHHHHHHHHHHHHHHHcCCC
Confidence 7999999999999964 699999999999999999999999999999999999998655311100 01222222
Q ss_pred CCCCcccccccccCEEEEeCHHHHHHHHHHHHHhcCCeEec-chHHHHHHHHHHHhcCC-CCCCEEEEEecCC
Q 020805 231 AGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGI-SSGGAAAAAIEIAKRPE-NAGKLIVVCSQFA 301 (321)
Q Consensus 231 ~~~~~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~~Gi~~~p-ss~~a~aa~~~~~~~~~-~~~~~vv~i~tgg 301 (321)
....+..++.+++|+.+.|+|+|++++++++++++|+++|| |||++++++.++++++. .++++||+|||||
T Consensus 235 ~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~la~~~Gi~~ep~ytg~~~aa~~~~~~~~~~~~~~~vv~i~TGG 307 (307)
T cd06449 235 VKEEDVVLDDDYAAPEYGIPNDETIEAIKLCARLEGIITDPVYEGKSMQGMIDLVRNGEFKEGSKVLFIHLGG 307 (307)
T ss_pred CCcccEEEecCcccCCCCCCCHHHHHHHHHHHHHhCCccccchHHHHHHHHHHHHhcCCCCCCCeEEEEeCCC
Confidence 22235566778899999999999999999999999999999 89999999999988764 4688999999997
No 73
>TIGR01274 ACC_deam 1-aminocyclopropane-1-carboxylate deaminase. This pyridoxal phosphate-dependent enzyme degrades 1-aminocyclopropane-1-carboxylate, which in plants is a precursor of the ripening hormone ethylene, to ammonia and alpha-ketoglutarate. This model includes all members of this family for which function has been demonstrated experimentally, but excludes a closely related family often annotated as putative members of this family.
Probab=100.00 E-value=4.4e-52 Score=385.30 Aligned_cols=298 Identities=18% Similarity=0.188 Sum_probs=241.1
Q ss_pred chhhhhhhhccCCcceecccccCCCCc--eEEEEeCCCCCC---CchhhHHHHHHHHHHHHcCCCCCCCeEEEee--CCC
Q 020805 7 NIAKDVTELIGNTPLVYLNNIVNGCVA--RIAAKLEMMEPC---SSVKDRIGYSMISDAEAKGLITPGESVLIEP--TSG 79 (321)
Q Consensus 7 ~~~~~i~~~~~~TPL~~~~~l~~~~g~--~v~~K~E~~~pt---GS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~--SsG 79 (321)
+..+++.+.+|+|||++++++++.+|. +||+|+|++||+ ||||||++.+++.+++++|. .+|+++ |+|
T Consensus 3 ~~~~~~~l~~g~TPl~~~~~l~~~~g~~~~l~~K~E~~n~~~~~gs~K~R~~~~~l~~a~~~G~-----~~vvs~ggs~g 77 (337)
T TIGR01274 3 SRFPRYPLTFGPSPIHPLPRLSQHLGGKVTLYAKREDCNSGLAFGGNKTRKLEYLIPDAQAQGC-----TTLVSIGGIQS 77 (337)
T ss_pred CcCCccccCCCCCCceEhHhhHHhcCCCceEEEEccCCcCCcCccchHHHHHHHHHHHHHHcCC-----CEEEECCCCcc
Confidence 345688899999999999999987764 999999999986 77799999999999999997 678877 679
Q ss_pred hHHHHHHHHHHHcCCeEEEEecCCCC--------HHHHHHHHHcCCEEEEeCCCCC--hhHHHHHHHHHHHhC-CCeEEc
Q 020805 80 NTGIGLAFMAAAKQYRLIITMPASMS--------LERRIILRAFGAELVLTDPAKG--MKGAVQKAEEILAKT-PNAYML 148 (321)
Q Consensus 80 N~g~AlA~aa~~~G~~~~ivvp~~~~--------~~~~~~~~~~Ga~v~~~~~~~~--~~~~~~~a~~~~~~~-~~~~~~ 148 (321)
|||+|+|++|+++|++|+||||+..+ ..|+.+++.|||+|+.++...+ ..+....+.+..++. +..|++
T Consensus 78 N~g~alA~~a~~~Gl~~~iv~~~~~~~~~~~~~~~~~~~~~~~~GA~v~~v~~~~~~~~~~~~~~a~~~~~~~~~~~~~i 157 (337)
T TIGR01274 78 NQTRQVAAVAAHLGMKCVLVQENWVNYSDAVYDRVGNIQLSRIMGADVRLDPDGFDIGHRNSWERALEEVRGAGGKPYPI 157 (337)
T ss_pred hHHHHHHHHHHHcCCcEEEEeccCCCccccchhccchHHHHHHcCCEEEEeCCcccccchHHHHHHHHHHHhcCCceEEe
Confidence 99999999999999999999998642 5899999999999999986421 224555555555554 234676
Q ss_pred CCCCC--CcchhhhhhchHHHHHhhh---CCCCCEEEEecCCchhHHHHHHHHHhcCCCcEEEEEecCCCCccCCCC---
Q 020805 149 QQFEN--PANPKIHYETTGPELWKGS---GGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGK--- 220 (321)
Q Consensus 149 ~~~~~--~~~~~~g~~~~~~Ei~~ql---~~~~d~vv~p~G~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~g~--- 220 (321)
+.+.+ +.. ..|+.++++||++|+ +.+||+||+|+|+|||++|+++++|..+++++||+|++++++.+....
T Consensus 158 ~~~~~~~~~~-~~G~~~~~~Ei~eq~~~~~~~~D~vvv~vGtGgt~aGl~~~~~~~~~~~~vigV~~~~~~~~~~~~~~~ 236 (337)
T TIGR01274 158 PAGCSDHPLG-GLGFVGFAFEVREQEGELGFKFDYVVVCSVTGSTQAGMVAGFAADGRKDRVIGIDASATPEQTRAQILR 236 (337)
T ss_pred CCCCCCCccc-hhHHHHHHHHHHHHHHhcCCCCCEEEEeCCchHhHHHHHHHHHHhCCCCeEEEEEecCCHHHHHHHHHH
Confidence 66643 333 468888899999995 347999999999999999999999999999999999999997653211
Q ss_pred CCCcccccccCCC--Cc--ccccccccCEEEEeCHHHHHHHHHHHHHhcCCeEec-chHHHHHHHHHHHhcCC-CCCCEE
Q 020805 221 PGPHKIQGIGAGF--VP--GVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGI-SSGGAAAAAIEIAKRPE-NAGKLI 294 (321)
Q Consensus 221 ~~~~~~~gl~~~~--~~--~~~~~~~~d~~~~V~d~e~~~a~~~l~~~~Gi~~~p-ss~~a~aa~~~~~~~~~-~~~~~v 294 (321)
...+.+++++... .+ +.+..++.|+.|.|+|+|+++++++|++++|+++|| |||+++++++++++++. .++++|
T Consensus 237 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~la~~eGi~~ep~ytg~~~aa~~~~~~~g~~~~~~~v 316 (337)
T TIGR01274 237 IARNTAEKIGLERDITEDDVVLDTRFAYPEYGVPNEGTLEAIRLCAKMEGVLTDPVYEGKSMHGMIEMIRRGEFKEGSNV 316 (337)
T ss_pred HHHHHHHHhCCCCCcCccceEEeccccCCCcCCCCHHHHHHHHHHHHhcCCccCcchHHHHHHHHHHHHhcCCCCCCCEE
Confidence 1112334454332 11 345667789999999999999999999999999999 69999999999998876 578899
Q ss_pred EEEecCCCCCCHHHHH
Q 020805 295 VVCSQFACITSDSWLI 310 (321)
Q Consensus 295 v~i~tgg~~~~~~~~~ 310 (321)
|++||||...+..|-+
T Consensus 317 v~~htGG~~~~~~~~~ 332 (337)
T TIGR01274 317 LYAHLGGAPALNAYSF 332 (337)
T ss_pred EEEeCCChhhhhhhHH
Confidence 9999999776665543
No 74
>PLN02618 tryptophan synthase, beta chain
Probab=100.00 E-value=3e-51 Score=383.20 Aligned_cols=300 Identities=20% Similarity=0.256 Sum_probs=232.9
Q ss_pred hhhhhhhhcc-CCcceecccccCCC------CceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCh
Q 020805 8 IAKDVTELIG-NTPLVYLNNIVNGC------VARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGN 80 (321)
Q Consensus 8 ~~~~i~~~~~-~TPL~~~~~l~~~~------g~~v~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN 80 (321)
....+..++| +|||+++++|++.+ |++||+|+|++|||||||+|.+...+..|.+.|+ +..|+++|+||
T Consensus 55 ~~~~l~~~vGr~TPL~~~~~Ls~~~g~~~~~g~~IylK~E~lnptGS~K~R~a~~~~l~A~~~g~----~~vIaesgaGN 130 (410)
T PLN02618 55 LAGILKDYVGRETPLYFAERLTEHYKRADGEGPEIYLKREDLNHTGAHKINNAVAQALLAKRLGK----KRIIAETGAGQ 130 (410)
T ss_pred HHHHHHHhcCCCCceeEhhhHHHHhccccCCCCEEEEEeCCCCCccchHHHHHHHHHHHHHHcCC----CEEEEEcCcHH
Confidence 4456778897 89999999999866 4899999999999999999999999998988876 24444557899
Q ss_pred HHHHHHHHHHHcCCeEEEEecCCC---CHHHHHHHHHcCCEEEEeCC-CCChhHHH-HHHHHHHHhCCCeEEc-CCCCC-
Q 020805 81 TGIGLAFMAAAKQYRLIITMPASM---SLERRIILRAFGAELVLTDP-AKGMKGAV-QKAEEILAKTPNAYML-QQFEN- 153 (321)
Q Consensus 81 ~g~AlA~aa~~~G~~~~ivvp~~~---~~~~~~~~~~~Ga~v~~~~~-~~~~~~~~-~~a~~~~~~~~~~~~~-~~~~~- 153 (321)
||+|+|++|+++|++|+||||+.. +..|+.+|+.|||+|+.++. ..+++++. +.+++++++.++.+|+ .+..+
T Consensus 131 hG~AlA~aaa~~Gl~~~I~m~~~~~~~~~~nv~~mr~lGA~Vi~v~~g~~~~~dA~~ea~~~~~~~~~~~~yi~gs~~gp 210 (410)
T PLN02618 131 HGVATATVCARFGLECIVYMGAQDMERQALNVFRMRLLGAEVRPVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGP 210 (410)
T ss_pred HHHHHHHHHHHcCCcEEEEEcCCchhhhhhhHHHHHHCCCEEEEEeCCCCCHHHHHHHHHHHHHhccCCCEEEecCcCCC
Confidence 999999999999999999999963 35677899999999999964 34567776 4456677663344554 32222
Q ss_pred ---CcchhhhhhchHHHHHhhh----CCCCCEEEEecCCchhHHHHHHHHHhcCCCcEEEEEecCCCC--------ccCC
Q 020805 154 ---PANPKIHYETTGPELWKGS----GGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESP--------VLSG 218 (321)
Q Consensus 154 ---~~~~~~g~~~~~~Ei~~ql----~~~~d~vv~p~G~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~--------~~~~ 218 (321)
+.....++.++|.||.+|+ +..||+||+|+|+||+++|++.+|+. .|+++||||||.++. ++..
T Consensus 211 ~P~~~~v~~~q~tig~Ei~~Q~~~~~g~~pD~VV~~VGgGg~~~Gi~~~f~~-~~~v~ligVEa~G~~~~~~~~~a~l~~ 289 (410)
T PLN02618 211 HPYPMMVRDFHSVIGKETRRQAMEKWGGKPDVLVACVGGGSNAMGLFHEFID-DEDVRLIGVEAAGFGLDSGKHAATLTK 289 (410)
T ss_pred CCCHHHHHHhhHHHHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHHh-CCCceEEEEEeCCCcccccccccchhc
Confidence 2233579999999997776 34699999999999999999999975 789999999999972 2333
Q ss_pred CCCC-------------------Cc-ccccccCCCC-cc--cccccccCEEEEeCHHHHHHHHHHHHHhcCCeEecchHH
Q 020805 219 GKPG-------------------PH-KIQGIGAGFV-PG--VLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGG 275 (321)
Q Consensus 219 g~~~-------------------~~-~~~gl~~~~~-~~--~~~~~~~d~~~~V~d~e~~~a~~~l~~~~Gi~~~pss~~ 275 (321)
+++. ++ ...||..+-+ |. .+.....|+.+.|+|+|+++++++|++.|||+++++|++
T Consensus 290 g~~gv~~g~~~~~l~~~~g~~~~~~sia~gl~~pgvgp~~~~l~~~~~~~~v~VtD~Eal~a~~~La~~eGIi~~~sSa~ 369 (410)
T PLN02618 290 GEVGVLHGAMSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDTGRAEYYSVTDEEALEAFQRLSRLEGIIPALETSH 369 (410)
T ss_pred CCcceeccccccccccccCCCCCCcchhhhhcCCCCcHHHHHHHhhcCcEEEEECHHHHHHHHHHHHHHcCceEchhHHH
Confidence 3221 11 1234432211 11 122346789999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCEEEEEecC-CCCCCHHHHHhhc
Q 020805 276 AAAAAIEIAKRPENAGKLIVVCSQF-ACITSDSWLIAIT 313 (321)
Q Consensus 276 a~aa~~~~~~~~~~~~~~vv~i~tg-g~~~~~~~~~~~~ 313 (321)
+++++++++++. .++++||+++|| |..|.+...+..+
T Consensus 370 a~a~a~~~a~~l-~~~~~iVv~lsgrG~Kd~~~v~~~~~ 407 (410)
T PLN02618 370 ALAYLEKLCPTL-PDGTKVVVNCSGRGDKDVNTAIKYLQ 407 (410)
T ss_pred HHHHHHHHhHhc-CCCCEEEEEeCCCCcCCHHHHHHHhc
Confidence 999999998764 468899999999 6677777765443
No 75
>PF00291 PALP: Pyridoxal-phosphate dependent enzyme; InterPro: IPR001926 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. Pyridoxal-5'-phosphate-dependent enzymes (B6 enzymes) catalyze manifold reactions in the metabolism of amino acids. Most of these enzymes can be assigned to one of three different families of homologous proteins, the alpha, beta and gamma families. The alpha and gamma family might be distantly related with one another, but are clearly not homologous with the beta family. The beta family includes L- and D-serine dehydratase, threonine dehydratase, the beta subunit of tryptophan synthase, threonine synthase and cysteine synthase. These enzymes catalyze beta-replacement or beta-elimination reactions []. Comparison of sequences from eukaryotic, archebacterial, and eubacterial species indicates that the functional specialization of most B6 enzymes has occurred already in the universal ancestor cell. The cofactor pyridoxal-5-phosphate must have emerged very early in biological evolution; conceivably, organic cofactors and metal ions were the first biological catalysts []. The 3D structure of the beta-subunit of tryptophan synthase has been solved. The subunit has two domains that are approximately the same size and similar to each other in folding pattern. Each has a core containing a four-stranded parallel beta-sheet with three helices on its inner side and one on the outer side. The cofactor is bound at the interface between the domains [].; GO: 0003824 catalytic activity, 0030170 pyridoxal phosphate binding, 0008152 metabolic process; PDB: 1P5J_A 2D1F_B 3AEY_B 3AEX_B 3IAU_A 2Q3B_A 2Q3D_A 2Q3C_A 1TZJ_A 1RQX_D ....
Probab=100.00 E-value=1.7e-51 Score=377.31 Aligned_cols=279 Identities=37% Similarity=0.496 Sum_probs=227.6
Q ss_pred hhhhccCCcceecc--cccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHH
Q 020805 12 VTELIGNTPLVYLN--NIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMA 89 (321)
Q Consensus 12 i~~~~~~TPL~~~~--~l~~~~g~~v~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~AlA~aa 89 (321)
|++++++|||++++ .++...+.+||+|+|++|||||||||++.+++.+++++|. ++|+++|+||||.|+|++|
T Consensus 1 i~~~~~~TPl~~~~~~~~~~~~~~~i~~K~E~~~ptgs~K~R~a~~~l~~a~~~~~-----~~vv~assGN~g~a~A~~a 75 (306)
T PF00291_consen 1 ISLGIGPTPLVRLPSRLLSELGGANIYLKREDLNPTGSFKDRGAYYLLSRAKEKGG-----RTVVGASSGNHGRALAYAA 75 (306)
T ss_dssp GGGGSSSS-EEEEHEHHHHHCTTSEEEEEEGGGSTTSBTHHHHHHHHHHHHHHTTT-----SEEEEESSSHHHHHHHHHH
T ss_pred CcCCCcCCCEEECccccchhccCCeEEEEECCCCCcCCcccccchhhhhhcccccc-----ceeeeeccCCceehhhhhh
Confidence 67899999999975 4555667899999999999999999999999999998865 7799999999999999999
Q ss_pred HHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCC--ChhHHHHHHHHH---HHhCCCeEEcCCCCCCcchhhhhhch
Q 020805 90 AAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAK--GMKGAVQKAEEI---LAKTPNAYMLQQFENPANPKIHYETT 164 (321)
Q Consensus 90 ~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~--~~~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~g~~~~ 164 (321)
+.+|++|++|+|+++++.|+++++.+|++|+.++... .++++.+.+++. ....++. ++|+ ++.+...||.++
T Consensus 76 ~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~g~~~~ 152 (306)
T PF00291_consen 76 ARLGLKCTIVVPEDVSPEKLKQMRALGAEVILVPGDVEGAFDDAQELAKERAELLSPFNGE--LNQY-NNPNVIAGYATI 152 (306)
T ss_dssp HHHTCEEEEEEETTSHHHHHHHHHHTTCEEEEESSTHHHHHHHHHHHHHHHHHHHHHSTTE--ESTT-TSHHHHHHHHHH
T ss_pred hhccccceeeeccccccccccceeeecceEEEccccccccccccccccccccccccccccc--cCcc-cchhhhhhhhhc
Confidence 9999999999999999999999999999999998631 133344444332 1222223 6777 555558999999
Q ss_pred HHHHHhhhCCCCCE--EEEecCCchhHHHHHHHHHh--cCCCcEEEEEecCCCCccC----CCCCC----CcccccccCC
Q 020805 165 GPELWKGSGGRIDA--LVSGIGTGGTITGAGKFLKE--KNPNIKLYGIEPTESPVLS----GGKPG----PHKIQGIGAG 232 (321)
Q Consensus 165 ~~Ei~~ql~~~~d~--vv~p~G~Gg~~aGi~~~~k~--~~~~~~vigv~~~~~~~~~----~g~~~----~~~~~gl~~~ 232 (321)
+.||++|++ .||. ||+|+|+||+++|++++++. . |.+++|+|++.+++.+. .+... .+.+.|++.+
T Consensus 153 ~~Ei~~q~~-~~d~d~vvv~~GtGg~~~Gi~~~~~~~~~-~~~~vigv~~~~~~~~~~~~~~g~~~~~~~~~~~~gl~~~ 230 (306)
T PF00291_consen 153 GLEIYEQLG-KPDPDYVVVPVGTGGTAAGIAAGLKELIL-PPVRVIGVEPEGSDPLYRSFKAGKPIRLPGESTIAGLGVP 230 (306)
T ss_dssp HHHHHHHHT-TESESEEEEEESSSHHHHHHHHHHHHHCH-TTSEEEEEEETTGHHHHHHHHHTSCEHSSCHHSSTGGTSS
T ss_pred chhcccccc-cccceEEEecCCchhHHHHHHhhhhhhhc-ccccceeeeccCCccccccccccccccccceeeeecccCC
Confidence 999999996 6665 99999999999999999999 7 89999999999987653 23331 1355688765
Q ss_pred C-Cccc----ccccccCEEEEeCHHHHHHHHHHHHHhcCCeEecchHHHHHHHHHHHhcCC---CCCCEEEEEecC
Q 020805 233 F-VPGV----LEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPE---NAGKLIVVCSQF 300 (321)
Q Consensus 233 ~-~~~~----~~~~~~d~~~~V~d~e~~~a~~~l~~~~Gi~~~pss~~a~aa~~~~~~~~~---~~~~~vv~i~tg 300 (321)
. .+.. +.++++++++.|+|+|+++++++|++++|+++||++|+++++++++.++.. .++++||+|+||
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~~a~a~aa~~~~~~~~~~~~~~~~~vv~v~tG 306 (306)
T PF00291_consen 231 MPFPGELDLELIDEYVGDVVGVSDEEALEAIRELAEREGILVEPSSAAALAAALKLAERGSLAPPAGKRVVVVLTG 306 (306)
T ss_dssp SCTTTTHHHHHHHHETEEEEEEEHHHHHHHHHHHHHHHSB-B-HHHHHHHHHHHHHHHHTGCHTTTTSEEEEEE-B
T ss_pred ccchhhhhhhhhhhccccccccchHHHHHHHHHHHHHcCcEEcHHHHHHHHHHHHHHHhCCccccCCCeEEEEcCC
Confidence 5 2222 445667788999999999999999999999999999999999999887764 378999999997
No 76
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=100.00 E-value=1.6e-49 Score=390.44 Aligned_cols=297 Identities=20% Similarity=0.192 Sum_probs=233.9
Q ss_pred hhhhhcc-CCcceecccccCC----CC--ceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHH
Q 020805 11 DVTELIG-NTPLVYLNNIVNG----CV--ARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGI 83 (321)
Q Consensus 11 ~i~~~~~-~TPL~~~~~l~~~----~g--~~v~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~ 83 (321)
-...++| +|||+++++|+.. +| ++||+|+|++|||||||||++.+++..+.+.|+ .+.|+++|+||||+
T Consensus 318 ~~~~~iGrpTPL~~~~~Ls~~l~~~~G~g~~IylK~E~lNpTGS~KdR~Al~~i~~A~~~G~----~~~IvetssGNhG~ 393 (695)
T PRK13802 318 LNQRYVGRPSPLTEAPRFAERVKEKTGLDARVFLKREDLNHTGAHKINNALGQALLVKRMGK----TRVIAETGAGQHGV 393 (695)
T ss_pred HHHhcCCCCCceeEchhhhhhhHhhcCCCceEEEEEccCCCcCCcHHHHHHHHHHHHHHcCC----CCEEEEECcHHHHH
Confidence 3557888 9999999998743 34 799999999999999999999999999999987 25788999999999
Q ss_pred HHHHHHHHcCCeEEEEecCC---CCHHHHHHHHHcCCEEEEeCCC-CChhHHHHHH-HHHHHhCC-CeEEcCCCCCCc--
Q 020805 84 GLAFMAAAKQYRLIITMPAS---MSLERRIILRAFGAELVLTDPA-KGMKGAVQKA-EEILAKTP-NAYMLQQFENPA-- 155 (321)
Q Consensus 84 AlA~aa~~~G~~~~ivvp~~---~~~~~~~~~~~~Ga~v~~~~~~-~~~~~~~~~a-~~~~~~~~-~~~~~~~~~~~~-- 155 (321)
|+|++|+++|++|+||||+. .+..|+.+|+.|||+|+.++.. .+++++.+.+ +++.++.+ .+|+++++.|++
T Consensus 394 AlA~aaA~~Gl~c~Ivmp~~~~~~~~~nv~~mr~lGAeVi~v~~g~~~l~~Ai~ea~~~~~~~~~~~~y~i~~~~g~~P~ 473 (695)
T PRK13802 394 ATATVCAMLGLKCRIYMGQIDARRQALNVARMRMLGAEVVEVTLGDRILKDAINEALRDWVTNVKDTHYLLGTVAGPHPF 473 (695)
T ss_pred HHHHHHHHcCCCEEEEEeCCcccccHHHHHHHHHcCCEEEEECCCCCcHHHHHHHHHHHHHHhcCCceEeecccCCCCCc
Confidence 99999999999999999995 4678999999999999999843 3566775444 55666533 457788886652
Q ss_pred --chhhhhhchHHHHHhhhCC-----CCCEEEEecCCchhHHHHHHHHHhcCCCcEEEEEecCCCCccCC----------
Q 020805 156 --NPKIHYETTGPELWKGSGG-----RIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSG---------- 218 (321)
Q Consensus 156 --~~~~g~~~~~~Ei~~ql~~-----~~d~vv~p~G~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~---------- 218 (321)
++.+||.++|.||++|+.. .||+||+|+|+||+++|++.+|+. .|.+++|||||.++....+
T Consensus 474 p~~v~agq~tiG~EI~eQ~~~~~g~~~pD~VVa~VGgGg~~~Gi~~~f~~-~~~vkligVE~~g~g~~~g~h~~~~~~g~ 552 (695)
T PRK13802 474 PAMVRDFQKIIGEEAKQQLQDWYGIDHPDAICACVGGGSNAIGVMNAFLD-DERVNLYGYEAGGNGPESGKHAIRFAPGT 552 (695)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCCCCEEEEcCCchHHHHHHHHHHHh-CCCceEEEEEecCCCccccchhhhhhhcc
Confidence 3458999999999999952 699999999999999999999976 6899999999999743221
Q ss_pred CCCC--------------------CcccccccCCCCcccc-cccccCEE--EEeCHHHHHHHHHHHHHhcCCeEecchHH
Q 020805 219 GKPG--------------------PHKIQGIGAGFVPGVL-EVNIIDEV--VQVSSDEAIETAKLLALKEGLFVGISSGG 275 (321)
Q Consensus 219 g~~~--------------------~~~~~gl~~~~~~~~~-~~~~~d~~--~~V~d~e~~~a~~~l~~~~Gi~~~pss~~ 275 (321)
|.+. .....||...-+.... .....+++ +.|+|+|++++.+.|++.|||+++|+|+.
T Consensus 553 g~~g~~~g~~~~~~~~~~g~~~~~~sis~gLdy~gvgp~~~~l~~~~rv~~~~vtD~eal~a~~~La~~EGIipa~eS~h 632 (695)
T PRK13802 553 GELGMFQGAKSYLLENDEGQTLDTYSISAGLDYASVGPEHAWLKDIGRVNYSWATDEEAMNAFKDLCETEGIIPAIESSH 632 (695)
T ss_pred CCccccccceeecccCCCCCccCccccccccCCCCCCchhHHHHhcCCeEEEEECHHHHHHHHHHHHHHcCccccchHHH
Confidence 1100 0001122111111111 12234554 99999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCC---CCCEEEEEecC-CCCCCHHHHHhh
Q 020805 276 AAAAAIEIAKRPEN---AGKLIVVCSQF-ACITSDSWLIAI 312 (321)
Q Consensus 276 a~aa~~~~~~~~~~---~~~~vv~i~tg-g~~~~~~~~~~~ 312 (321)
|++++++++++... ++++||+++|| |..|.+.+.+..
T Consensus 633 Ava~a~~~a~~~~~~~~~~~~Vv~~lsg~GdKdl~~~~~~~ 673 (695)
T PRK13802 633 AVAGAYKAAADLKAKGYEHPVMIVNISGRGDKDMNTAGKWF 673 (695)
T ss_pred HHHHHHHHHHhcccccCCCCEEEEEECCCCcCCHHHHHHHh
Confidence 99999999876532 25699999999 788888877654
No 77
>PRK14045 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=100.00 E-value=2.8e-50 Score=371.87 Aligned_cols=292 Identities=20% Similarity=0.237 Sum_probs=227.9
Q ss_pred hhhhhhhhccCCcceecccccCCCCceEEEEeCCCCCC--CchhhHHHHHHHHHHHHcCCCCCCCeEEE--eeCCChHHH
Q 020805 8 IAKDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPC--SSVKDRIGYSMISDAEAKGLITPGESVLI--EPTSGNTGI 83 (321)
Q Consensus 8 ~~~~i~~~~~~TPL~~~~~l~~~~g~~v~~K~E~~~pt--GS~K~R~a~~~l~~a~~~g~~~~g~~~vv--~~SsGN~g~ 83 (321)
.++++.+.+++|||+++++++...|++||+|+|++||+ ||||+|++.+++.++.++|. ++|+ ++|+||||+
T Consensus 11 ~~~~~~l~~~~TPl~~~~~l~~~~g~~v~~K~E~l~~~~~gg~K~R~~~~~l~~a~~~G~-----~~vv~~~~ssGN~g~ 85 (329)
T PRK14045 11 KFPRVELIPWETPIQYLPNISRELGADVYVKRDDLTGLGIGGNKIRKLEYLLGDALSRGA-----DVVITVGAVHSNHAF 85 (329)
T ss_pred cCCCcccCCCCCCcccchhhHHHhCCeEEEEcccccCCCCCcchHHHHHhHHHHHHHcCC-----CEEEEeCccHHHHHH
Confidence 44689999999999999999877788999999999996 89999999999999999887 5576 589999999
Q ss_pred HHHHHHHHcCCeEEEEecCCCCHH-HHHHHHHcCCEEEEeCCCCC---hhHHHHHHHHHHHhCCCeEEc-CCCCCCcchh
Q 020805 84 GLAFMAAAKQYRLIITMPASMSLE-RRIILRAFGAELVLTDPAKG---MKGAVQKAEEILAKTPNAYML-QQFENPANPK 158 (321)
Q Consensus 84 AlA~aa~~~G~~~~ivvp~~~~~~-~~~~~~~~Ga~v~~~~~~~~---~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~ 158 (321)
|+|++|+.+|++|++|||...+.. +...++.+||+++.++...+ .+.+.+.++++.++.+..|++ +++.|+.++
T Consensus 86 alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~n~~~~- 164 (329)
T PRK14045 86 VTGLAAKKLGLDAVLVLRGKEELKGNYLLDKIMGIETRVYEAKDSFELMKYAEEVAEELKGEGRKPYIIPPGGASPVGT- 164 (329)
T ss_pred HHHHHHHHcCCeEEEEEeCCCCCCcCHHHHHHCCCEEEEECCCcccchHHHHHHHHHHHHhcCCCEEEECCCCCchhHH-
Confidence 999999999999999999875433 66678999999998874222 235566666766665445654 556677774
Q ss_pred hhhhchHHHHHhhhC---CCCCEEEEecCCchhHHHHHHHHHhcCCCcEEEEEecCCCCccCCCC-----CCCccccccc
Q 020805 159 IHYETTGPELWKGSG---GRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGK-----PGPHKIQGIG 230 (321)
Q Consensus 159 ~g~~~~~~Ei~~ql~---~~~d~vv~p~G~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~g~-----~~~~~~~gl~ 230 (321)
.|+.+...||++|++ .++|+||+|+|||||++|+++++|..+|+++||+|+|.+......+. .....+.|++
T Consensus 165 ~g~~~~~~EI~~q~~~~~~~~d~vv~~vGtGGt~aGi~~~lk~~~~~~kVigv~~~~~~~~~~~~~~~~~~~~~~~~g~~ 244 (329)
T PRK14045 165 LGYVRAVGEIATQVKKLGVRFDSIVVAVGSGGTLAGLSLGLAILNAEWRVVGIAVGSFGEKMKEKVKNLVKKTKELLGVK 244 (329)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 454444449999996 37999999999999999999999999999999999997632111000 0111234444
Q ss_pred CCC-CcccccccccCEEEEeCHHHHHHHHHHHHHhcCCeEec-chHHHHHHHHHHHhcCCCCCCEEEEEecCCCCCCHHH
Q 020805 231 AGF-VPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGI-SSGGAAAAAIEIAKRPENAGKLIVVCSQFACITSDSW 308 (321)
Q Consensus 231 ~~~-~~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~~Gi~~~p-ss~~a~aa~~~~~~~~~~~~~~vv~i~tgg~~~~~~~ 308 (321)
... .+..++. .+|++..++ +|+++++++++++|||++|| |||++++++++++++.. .+++||+|||||..-...+
T Consensus 245 ~~~~~~~~~d~-~~~~y~~~~-~e~~~~~~~la~~eGi~ldpvytgk~~~a~~~~~~~~~-~~~~iv~ihtGG~~g~~~~ 321 (329)
T PRK14045 245 VKVQEPELYDY-SFGEYGKIT-KEVAKLIRSVGTMEGLILDPVYTGKAFYGLMDLAKKGE-LGEKILFIHTGGISGTFHY 321 (329)
T ss_pred CCccceEeccc-ccCCCCCCC-HHHHHHHHHHHHhhCCCCccchHHHHHHHHHHHHHcCC-CCCCEEEEECCCcccccch
Confidence 332 2323333 347766676 69999999999999999999 99999999999998763 3789999999986555444
No 78
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=100.00 E-value=2.6e-48 Score=382.74 Aligned_cols=297 Identities=21% Similarity=0.200 Sum_probs=230.5
Q ss_pred hhhhhcc-CCcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHH
Q 020805 11 DVTELIG-NTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMA 89 (321)
Q Consensus 11 ~i~~~~~-~TPL~~~~~l~~~~g~~v~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~AlA~aa 89 (321)
-+..+.| +|||+++++|++.+|.+||+|+|++|||||||+|.+..++..+.+.|+ .+.++++|+||||+|+|++|
T Consensus 263 ~~~~~~grpTPL~~~~~Ls~~~G~~IylK~E~lnptGS~K~r~al~~~~~a~~~g~----~~vi~e~gsGnhG~A~A~~a 338 (610)
T PRK13803 263 LLQNYAGRPTPLTEAKRLSDIYGARIYLKREDLNHTGSHKINNALGQALLAKRMGK----TRIIAETGAGQHGVATATAC 338 (610)
T ss_pred HHHHhCCCCCcceeHHHHHHhhCCEEEEEeCCCCCcccHHHHHHHHHHHHHHHcCC----CEEEEecChHHHHHHHHHHH
Confidence 3455666 799999999998888999999999999999999999999999988875 24455789999999999999
Q ss_pred HHcCCeEEEEecCCC---CHHHHHHHHHcCCEEEEeCCC-CChhHHHH-HHHHHHHhCCCeEEcCCCC---C--Ccchhh
Q 020805 90 AAKQYRLIITMPASM---SLERRIILRAFGAELVLTDPA-KGMKGAVQ-KAEEILAKTPNAYMLQQFE---N--PANPKI 159 (321)
Q Consensus 90 ~~~G~~~~ivvp~~~---~~~~~~~~~~~Ga~v~~~~~~-~~~~~~~~-~a~~~~~~~~~~~~~~~~~---~--~~~~~~ 159 (321)
+++|++|+||||+.. +..|+.+|+.+||+|+.++.. ..+.++.+ ..+++..+.++.+|+.++. + |.+...
T Consensus 339 a~~Gl~~~I~m~~~~~~~~~~nv~~m~~~GA~Vi~v~~~~~~~~~a~~~a~~~~~~~~~~~~y~~~~~~g~~p~p~~v~~ 418 (610)
T PRK13803 339 ALFGLKCTIFMGEEDIKRQALNVERMKLLGANVIPVLSGSKTLKDAVNEAIRDWVASVPDTHYLIGSAVGPHPYPEMVAY 418 (610)
T ss_pred HHcCCcEEEEEeCCcccchhhHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEeCCcCCCCCcHHHHHH
Confidence 999999999999864 356888999999999999853 34556644 3444534444566664332 2 333335
Q ss_pred hhhchHHHHHhhhC----CCCCEEEEecCCchhHHHHHHHHHhcCCCcEEEEEecCCCC--------ccCCCCCC-----
Q 020805 160 HYETTGPELWKGSG----GRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESP--------VLSGGKPG----- 222 (321)
Q Consensus 160 g~~~~~~Ei~~ql~----~~~d~vv~p~G~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~--------~~~~g~~~----- 222 (321)
||++++.||++|+. ..||+||+|+|+||+++|++.+|+. .|+++||||||.++. ++..+.+.
T Consensus 419 ~~~tig~Ei~~Q~~~~~g~~pD~vV~~vGgGg~~~Gi~~~f~~-~~~v~iigVE~~g~~~~~~~~~a~l~~g~~g~~~g~ 497 (610)
T PRK13803 419 FQSVIGEEAKEQLKEQTGKLPDAIIACVGGGSNAIGIFYHFLD-DPSVKLIGVEAGGKGVNTGEHAATIKKGRKGVLHGS 497 (610)
T ss_pred HhhHHHHHHHHHHHHhhCCCCCEEEEEeCcCHhHHHHHHHHhh-CCCceEEEEecCCCCcccccccchhhcCCeeeeccc
Confidence 89999999999984 2599999999999999999999964 789999999999862 23333221
Q ss_pred --------------C-cccccccCCCC-ccc--ccccccCEEEEeCHHHHHHHHHHHHHhcCCeEecchHHHHHHHHHHH
Q 020805 223 --------------P-HKIQGIGAGFV-PGV--LEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIA 284 (321)
Q Consensus 223 --------------~-~~~~gl~~~~~-~~~--~~~~~~d~~~~V~d~e~~~a~~~l~~~~Gi~~~pss~~a~aa~~~~~ 284 (321)
+ +...||..+.+ |.. +.....++++.|+|+|+++++++|++.+||+++++||+++++++++.
T Consensus 498 ~~~~~~~~~g~~~~~~sia~gl~~~gvg~~~~~~~~~~~~~~v~Vtd~ea~~a~~~La~~eGi~~~~ssa~alA~~~~~~ 577 (610)
T PRK13803 498 MTYLMQDENGQILEPHSISAGLDYPGIGPMHANLFETGRAIYTSVTDEEALDAFKLLAKLEGIIPALESSHALAYLKEGR 577 (610)
T ss_pred eeeeecccCCcccCCceeeccCCCCCCCHHHHHHHhcCCeEEEEECHHHHHHHHHHHHHHcCCccCcHHHHHHHHHHHhc
Confidence 1 12234432211 211 22334457999999999999999999999999999999999999976
Q ss_pred hcCCCCCCEEEEEecC-CCCCCHHHHHhhc
Q 020805 285 KRPENAGKLIVVCSQF-ACITSDSWLIAIT 313 (321)
Q Consensus 285 ~~~~~~~~~vv~i~tg-g~~~~~~~~~~~~ 313 (321)
.+. .++++||+++|| |+.|.+.+.+...
T Consensus 578 ~~~-~~~~~Vvv~lsG~G~kd~~~~~~~~~ 606 (610)
T PRK13803 578 KKF-KKKDIVIVNLSGRGDKDIPTLKEYFE 606 (610)
T ss_pred hhc-CCCCeEEEEeCCCCcCCHHHHHHHHh
Confidence 543 368899999999 8999888766443
No 79
>COG0498 ThrC Threonine synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.2e-43 Score=330.10 Aligned_cols=288 Identities=22% Similarity=0.209 Sum_probs=240.0
Q ss_pred hhhhhccCCcceecccccCCCCc---eEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHH
Q 020805 11 DVTELIGNTPLVYLNNIVNGCVA---RIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAF 87 (321)
Q Consensus 11 ~i~~~~~~TPL~~~~~l~~~~g~---~v~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~AlA~ 87 (321)
......+.||+++.+++...++. ++|+|.|++|||||||||++..++..+.+.|. .+|+++||||+|.|+|+
T Consensus 69 ~~~l~eg~tp~~~~~~~~~~l~~~~~~lyvk~~~~nPT~SFKDrg~~~~~~~~~~~g~-----~~I~~ASSGnTgAs~aa 143 (411)
T COG0498 69 AVSLGEGGTPLYKAPALAAPLGVLNDNLYVKELGHNPTGSFKDRGMTVLVSLAKELGA-----KTILCASSGNTGASAAA 143 (411)
T ss_pred hhhhhhccCccccCcccchhhccCCcceehhhhccCCCcchhhhhHHHHHHHHHHhcC-----CEEEEeCCchHHHHHHH
Confidence 45778899999999888877663 59999999999999999999999999999884 46999999999999999
Q ss_pred HHHHcCCeEEEEecCC-CCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEcCCCCCCcchhhhhhchHH
Q 020805 88 MAAAKQYRLIITMPAS-MSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGP 166 (321)
Q Consensus 88 aa~~~G~~~~ivvp~~-~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 166 (321)
++++.|++|+|++|.+ .+..|+.++..+|++++.+.+ ++|++.+.+++++++. ++++....-||.. ++||.|+++
T Consensus 144 ya~rag~~v~Vl~P~g~vs~~k~~q~~~~ga~~i~v~G--~fDda~~~vk~~~~~~-~~~~~~nsiNp~r-legq~t~~f 219 (411)
T COG0498 144 YAARAGLKVFVLYPKGKVSPGKLAQMLTLGAHVIAVDG--NFDDAQELVKEAANRE-GLLSAVNSINPYR-LEGQKTYAF 219 (411)
T ss_pred HhccCCCeEEEEecCCCCCHHHHHHHHhcCCEEEEEcC--cHHHHHHHHHHHHhhC-CceeeccccCHHH-hhhhhhhHh
Confidence 9999999999999998 999999999999999999997 5789999999999865 5577666677877 789999999
Q ss_pred HHHhhhC-CCCCEEEEecCCchhHHHHHHHHHhcCCC------cEEEEEecCCCCccCCCCC----CC-cccccccCCCC
Q 020805 167 ELWKGSG-GRIDALVSGIGTGGTITGAGKFLKEKNPN------IKLYGIEPTESPVLSGGKP----GP-HKIQGIGAGFV 234 (321)
Q Consensus 167 Ei~~ql~-~~~d~vv~p~G~Gg~~aGi~~~~k~~~~~------~~vigv~~~~~~~~~~g~~----~~-~~~~gl~~~~~ 234 (321)
||++|++ ..||+|++|+|+||++.|+++++++..|. ++..+||++++.++..... .+ +..+.+-.+ .
T Consensus 220 e~~~ql~~~~p~~v~vPvGn~gni~a~~~g~~~~~~~g~i~~~p~~~~vqaeg~~p~~~~~~~~~~~~~T~a~am~I~-~ 298 (411)
T COG0498 220 EIAEQLGWKAPDHVVVPVGNGGNLLAIYKGFKEGLPIGKIDKAPNMNGVQAEGFSPGVYAWKEGRETPETIAPAMDIG-N 298 (411)
T ss_pred HHHHHhCCCCCCeEEEeCCchHHHHHHHHHHHhcccccchhcCchhhhhhHhhccchhhhcccccccccccccccccC-C
Confidence 9999997 47999999999999999999999988763 6888999998765432111 11 222333322 2
Q ss_pred ccccc------ccccCEEEEeCHHHHHHHHHHHHHhcCCeEecchHHHHHHHHHHHhcCCCCCCEEEEEecCCCCCCHHH
Q 020805 235 PGVLE------VNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVCSQFACITSDSW 308 (321)
Q Consensus 235 ~~~~~------~~~~d~~~~V~d~e~~~a~~~l~~~~Gi~~~pss~~a~aa~~~~~~~~~~~~~~vv~i~tgg~~~~~~~ 308 (321)
|.+.. ++..+..+.|+|+|++++++++++.+|+++||+||++++++.++.++...+++++|++.||....+.+-
T Consensus 299 p~n~~r~l~a~~es~g~~~~vsdeEi~~a~~~l~~~eG~~~eP~sA~ava~l~k~~~~~i~~~~~vV~v~Tg~~~K~~~~ 378 (411)
T COG0498 299 PSNWERALFALRESGGLAVAVSDEEILEAIKLLAEREGILIEPHSAVAVAALLKLREKIIDPDETVVLVLTGHGLKFPDT 378 (411)
T ss_pred CCCHHHHHHHHHhcCCceEEeCHHHHHHHHHHHHHhCCcccCccHHHHHHHHHHHHHhhcCCCCeEEEEecCCcccChhH
Confidence 33321 223455999999999999999999999999999999999999998762256789999999965444444
No 80
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]
Probab=100.00 E-value=7.7e-38 Score=273.23 Aligned_cols=295 Identities=19% Similarity=0.202 Sum_probs=235.4
Q ss_pred hhhhhhhhccCCcceecccccCCCCceEEEEeCCCCC--CCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCC--ChHHH
Q 020805 8 IAKDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEP--CSSVKDRIGYSMISDAEAKGLITPGESVLIEPTS--GNTGI 83 (321)
Q Consensus 8 ~~~~i~~~~~~TPL~~~~~l~~~~g~~v~~K~E~~~p--tGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~Ss--GN~g~ 83 (321)
.++|+....++|||..+++++...|.+||+|+||+.+ .|.+|.|...+++.+|+++|. +++||+.+ +||.+
T Consensus 5 rf~R~~l~~~pTPiq~L~rls~~lg~eiYiKRDD~t~l~~gGNK~RKLefll~eal~~g~-----dTlvT~GgiQSNh~r 79 (323)
T COG2515 5 RFPRMELIFGPTPIQKLPRLSAHLGVEIYIKRDDLTGLAFGGNKIRKLEFLLGEALRKGA-----DTLVTYGGIQSNHVR 79 (323)
T ss_pred cCCccccCCCCChhhhHHHHHHhcCeEEEEEcccccccccCccHHHHHHHHHhhhhhcCC-----cEEEEecccchhHHH
Confidence 4678888999999999999999999999999999965 579999999999999999987 88999866 99999
Q ss_pred HHHHHHHHcCCeEEEEecCCC----CHHHHHHHHHcCCEEEEeCCCCCh--h-HHHHHHHHHHHhCCCeEEcCCCCCCcc
Q 020805 84 GLAFMAAAKQYRLIITMPASM----SLERRIILRAFGAELVLTDPAKGM--K-GAVQKAEEILAKTPNAYMLQQFENPAN 156 (321)
Q Consensus 84 AlA~aa~~~G~~~~ivvp~~~----~~~~~~~~~~~Ga~v~~~~~~~~~--~-~~~~~a~~~~~~~~~~~~~~~~~~~~~ 156 (321)
++|++|+++|++|+.++.... -..++...+.+|++++.++...+. + .....+.++.++....|.++.......
T Consensus 80 ~tAavA~~lGl~~v~ile~~~~~y~~ngn~Ll~~l~G~~~~~~~~~~d~~~~~~~~~~~e~~~~~g~kpyvIp~GG~~~~ 159 (323)
T COG2515 80 QTAAVAAKLGLKCVLILENIEANYLLNGNLLLSKLMGAEVRAVDAGTDIGINASAEELAEEVRKQGGKPYVIPEGGSSPL 159 (323)
T ss_pred HHHHHHHhcCCcEEEEEeccccccccccchhhhhhcCceEEEecCCCChhhchhhHHHHHHHHhcCCCCcEeccCCcCcc
Confidence 999999999999999998765 233677788999999999975443 2 233334444444434555555552223
Q ss_pred hhhhhhchHHHHHhhhC--CCCCEEEEecCCchhHHHHHHHHHhcCCCcEEEEEecCCCCccCCCCC---CCcccccccC
Q 020805 157 PKIHYETTGPELWKGSG--GRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKP---GPHKIQGIGA 231 (321)
Q Consensus 157 ~~~g~~~~~~Ei~~ql~--~~~d~vv~p~G~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~g~~---~~~~~~gl~~ 231 (321)
...||...+.||.+|.. -++|.||+++|||||.||++.++...+++.+|||+.+.........+. ....++.++.
T Consensus 160 g~lGyv~~a~Ei~~Q~~~~~~fD~vVva~gs~gT~AGl~~g~~~~~~~~~ViG~~v~~~~~~~~~qv~~L~~~~a~~~~~ 239 (323)
T COG2515 160 GALGYVRLALEIAEQAEQLLKFDSVVVAPGSGGTHAGLLVGLAQLGPDVEVIGIDVSADPEKLKEQVLNLAQATAELLGL 239 (323)
T ss_pred ccccHHHHHHHHHHHHhhccCCCEEEEeCCCcchHHHHHHHhhhccCCCceEEEeecCCHHHHHHHHHHHHHHHHHHcCC
Confidence 35699999999999986 579999999999999999999999999999999999888764321110 1112222222
Q ss_pred C-CCcccccccccCEEEEeCHHHHHHHHHHHHHhcCCeEec-chHHHHHHHHHHHhcCC-CCCCEEEEEecCCCCCCHH
Q 020805 232 G-FVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGI-SSGGAAAAAIEIAKRPE-NAGKLIVVCSQFACITSDS 307 (321)
Q Consensus 232 ~-~~~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~~Gi~~~p-ss~~a~aa~~~~~~~~~-~~~~~vv~i~tgg~~~~~~ 307 (321)
. ...+.++.++....|.++.+|.+++++.+++.|||..|| |+++++++++++++++. .++.+|++|||||-.-...
T Consensus 240 ~~~~~v~~~~dy~~~~Yg~p~~e~~e~i~~~~~~eGillDpVYtgKam~Glid~~~k~~f~~~~~vLfiHtGG~~gl~~ 318 (323)
T COG2515 240 GSEADVLLSDDYHHPGYGKPNEEDIEAIKLLARLEGILLDPVYTGKAMYGLIDLARKGEFPDGSPVLFIHTGGAPGLFA 318 (323)
T ss_pred CCCceEEEEecccCCccCCcCHHHHHHHHHHHHhhCcccccccchHHHHHHHHHHhcccCCCCCceEEEEcCCccchhc
Confidence 2 223445677788899999999999999999999999999 99999999999999887 5667799999998654443
No 81
>COG0133 TrpB Tryptophan synthase beta chain [Amino acid transport and metabolism]
Probab=100.00 E-value=1.1e-33 Score=247.64 Aligned_cols=295 Identities=23% Similarity=0.261 Sum_probs=223.5
Q ss_pred hhhhcc-CCcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHH
Q 020805 12 VTELIG-NTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAA 90 (321)
Q Consensus 12 i~~~~~-~TPL~~~~~l~~~~g~~v~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~AlA~aa~ 90 (321)
++.+.| +|||...++|++.+|++||+|+|++|+||++|..-+.-.+.-|++.|+ ++.+.+...|.||.|.|.+|+
T Consensus 49 l~~Y~GRptpLy~a~~Lt~~~gakiyLKREDL~HtGAHKiNN~lGQ~LLAkrMGK----~riIAETGAGQHGVAtAta~A 124 (396)
T COG0133 49 LKDYAGRPTPLYFAERLTEHLGAKIYLKREDLNHTGAHKINNALGQALLAKRMGK----TRIIAETGAGQHGVATATAAA 124 (396)
T ss_pred HHHhCCCCChhHHHHHHHHhhCceEEEehhhhcccchhhHHHHHHHHHHHHHhCC----ceEEeecCCCcccHHHHHHHH
Confidence 455665 499999999999999999999999999999999999999999999998 456667777999999999999
Q ss_pred HcCCeEEEEecCC---CCHHHHHHHHHcCCEEEEeCC-CCChhHHHHHH-HHHHHhCCCeEEcCCC-----CCCcchhhh
Q 020805 91 AKQYRLIITMPAS---MSLERRIILRAFGAELVLTDP-AKGMKGAVQKA-EEILAKTPNAYMLQQF-----ENPANPKIH 160 (321)
Q Consensus 91 ~~G~~~~ivvp~~---~~~~~~~~~~~~Ga~v~~~~~-~~~~~~~~~~a-~~~~~~~~~~~~~~~~-----~~~~~~~~g 160 (321)
++|++|+|||-.. -...++-+|+.+||+|+.|.. +....++...| +.+....++.+|+-.. --|......
T Consensus 125 ~fgl~C~iYMGa~Dv~RQ~~NVfRM~LlGA~V~pV~sGs~TLKDA~neAlRdWvtn~~~ThY~iGsa~GPHPyP~iVRdF 204 (396)
T COG0133 125 LFGLECVIYMGAEDVERQALNVFRMRLLGAEVVPVTSGSGTLKDAINEALRDWVTNVEDTHYLIGSAAGPHPYPTIVRDF 204 (396)
T ss_pred HhCCceEEEecchhhhhcccchhhhhhcCceEEEeccCCchHHHHHHHHHHHHHhccccceEEEeeccCCCCchHHHHHH
Confidence 9999999999874 245678899999999998874 33455665544 6777766666664221 113333467
Q ss_pred hhchHHHHHhhh----CCCCCEEEEecCCchhHHHHHHHHHhcCCCcEEEEEecCCCC--------ccCCCCCCC-----
Q 020805 161 YETTGPELWKGS----GGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESP--------VLSGGKPGP----- 223 (321)
Q Consensus 161 ~~~~~~Ei~~ql----~~~~d~vv~p~G~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~--------~~~~g~~~~----- 223 (321)
++.||.|.-+|+ +.-||+||.|+|+|++..|+...|.. .+++++||||+.+.. ++..|++.-
T Consensus 205 Q~vIG~E~k~Qile~egrlPD~vvACVGGGSNAiG~F~~Fi~-d~~V~LiGvEaaG~Gi~t~~HaAtl~~G~~GvlhG~~ 283 (396)
T COG0133 205 QSVIGEEAKAQILEKEGRLPDAVVACVGGGSNAIGIFHPFID-DESVRLIGVEAAGKGIETGKHAATLTAGRPGVLHGMK 283 (396)
T ss_pred HHHHhHHHHHHHHHHhCCCCCeEEEeccCCcchhhhcccccC-CCCceEEEeccCcCccCCCccceeecCCCceeeeccc
Confidence 899999988885 34599999999999999999988864 378999999998753 232333210
Q ss_pred --------------c-ccccccCCCC-ccc--ccccccCEEEEeCHHHHHHHHHHHHHhcCCeEecchHHHHHHHHHHHh
Q 020805 224 --------------H-KIQGIGAGFV-PGV--LEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAK 285 (321)
Q Consensus 224 --------------~-~~~gl~~~~~-~~~--~~~~~~d~~~~V~d~e~~~a~~~l~~~~Gi~~~pss~~a~aa~~~~~~ 285 (321)
+ ...||-.+-+ |.. +...---+.+.|+|+|++++.+.|.+.|||+.-..|+.|++.++++++
T Consensus 284 tyllQd~~GQi~e~hSISAGLDYPgVGPeha~l~~~gRa~y~~itD~EAl~af~~L~r~EGIIPALESsHAlA~a~kla~ 363 (396)
T COG0133 284 TYLLQDEDGQILESHSISAGLDYPGVGPEHAYLKDIGRAEYVSITDEEALEAFQLLSRLEGIIPALESSHALAYALKLAP 363 (396)
T ss_pred ceeeEcCCCCEeeeeeeccCCCCCCCChhHHHHHhcCceeEEecChHHHHHHHHHHHHhcCcchhhhhHHHHHHHHHhch
Confidence 0 0122221111 111 111112358999999999999999999999999999999999999987
Q ss_pred cCCCCCCEEEEEecC-CCCCCHHHHHhh
Q 020805 286 RPENAGKLIVVCSQF-ACITSDSWLIAI 312 (321)
Q Consensus 286 ~~~~~~~~vv~i~tg-g~~~~~~~~~~~ 312 (321)
+.. +++.+|+-+|| |..|.+...+..
T Consensus 364 ~~~-~~~~ivvnlSGRGDKDv~tv~~~l 390 (396)
T COG0133 364 KLP-KDEIIVVNLSGRGDKDVFTVAKLL 390 (396)
T ss_pred hcC-CCcEEEEEccCCCcccHHHHHHHh
Confidence 653 55688888888 677777666543
No 82
>PRK09225 threonine synthase; Validated
Probab=100.00 E-value=1.5e-32 Score=261.34 Aligned_cols=273 Identities=16% Similarity=0.088 Sum_probs=205.7
Q ss_pred CCcceecccccCCCCceEEEEeCCCCCCCchhhHHHHH---HHHHHHHcCCCCCCCeEEEeeCCChHHHHH-HHHHHHcC
Q 020805 18 NTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYS---MISDAEAKGLITPGESVLIEPTSGNTGIGL-AFMAAAKQ 93 (321)
Q Consensus 18 ~TPL~~~~~l~~~~g~~v~~K~E~~~ptGS~K~R~a~~---~l~~a~~~g~~~~g~~~vv~~SsGN~g~Al-A~aa~~~G 93 (321)
.+||.+++ .++|+.--+++||||||||++.. ++..+++ +. ..+|+++||||+|.|+ |.++.+.|
T Consensus 88 ~~pl~~l~-------~~~~~lELfhGPT~sFKD~a~~~l~~~l~~a~~-~~----~~~Il~ATSGdtG~Aa~aaf~~~~g 155 (462)
T PRK09225 88 IAPLVQLD-------DNLYVLELFHGPTLAFKDFALQFLAQLLEYVLK-GE----KITILGATSGDTGSAAAEAFRGKPN 155 (462)
T ss_pred ccceEEeC-------CCceeHhhccCCccchhhhHHHHHHHHHHHHHh-CC----CcEEEEcCCCcHHHHHHHHHhCcCC
Confidence 47887764 26899999999999999999988 7888877 42 2679999999999998 78899999
Q ss_pred CeEEEEecCC-CCHHHHHHHHHc-CCEEEEeCCCCChhHHHHHHHHHHHhC-----CCeEEcCCCCCCcchhhhhhchHH
Q 020805 94 YRLIITMPAS-MSLERRIILRAF-GAELVLTDPAKGMKGAVQKAEEILAKT-----PNAYMLQQFENPANPKIHYETTGP 166 (321)
Q Consensus 94 ~~~~ivvp~~-~~~~~~~~~~~~-Ga~v~~~~~~~~~~~~~~~a~~~~~~~-----~~~~~~~~~~~~~~~~~g~~~~~~ 166 (321)
++|+|++|++ ++..+..+|..+ |++|+.+.-++++|++.+.++++.++. -+++-.+.. |+.. +.||.++++
T Consensus 156 i~~~V~~P~g~vs~~q~~Qm~t~~g~nv~vi~V~G~fDD~q~~vk~~~~d~~~~~~~~l~saNSi-N~~R-i~gQ~~yyf 233 (462)
T PRK09225 156 VRVVILYPKGKVSPVQEKQMTTLQGDNIHVVAVEGNFDDCQALVKAAFNDEELKEKLKLSSANSI-NIGR-LLAQIVYYF 233 (462)
T ss_pred CEEEEEEcCCCCCHHHHHHHHhhcCCCeEEEEeCCCHHHHHHHHHHHhhchhhhhcCceEEEecc-CHHH-HHHHHHHHH
Confidence 9999999996 999999999999 998844433346899999988876551 145555554 6666 789999999
Q ss_pred HHHhhhCC---CCCEEEEecCCchhHHHHHHHHHhcCCCcEEEEEecCCCCcc----CCCCCCC-----cccccccCCCC
Q 020805 167 ELWKGSGG---RIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVL----SGGKPGP-----HKIQGIGAGFV 234 (321)
Q Consensus 167 Ei~~ql~~---~~d~vv~p~G~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~----~~g~~~~-----~~~~gl~~~~~ 234 (321)
|+++|+.+ .||+|++|+|+||++.|.+.+.+.-.|-.|+|+++.... .+ ..|...+ +...++... .
T Consensus 234 ea~~ql~~~~~~p~~~vVPtGnfgni~a~~~Ak~mGlpi~kli~A~n~n~-~l~~~~~~G~y~~~~~~~T~s~amdI~-~ 311 (462)
T PRK09225 234 YAYLQLGIEAGEKVNFSVPSGNFGNILAGYYAKKMGLPIKRLIVATNEND-VLTRFLKTGVYDPRPTVATLSPAMDIS-V 311 (462)
T ss_pred HHHHHhccccCCCCEEEEECCcHHHHHHHHHHHHcCCCcceEEEEecCCh-HHHHHHHcCCCccCCCCCCcCchhhcC-C
Confidence 99999964 389999999999999999999554456669999983333 32 2233211 122222221 2
Q ss_pred cccccc---------------------ccc---------------CEEEEeCHHHHHHHHHHHHHhcCCeEecchHHHHH
Q 020805 235 PGVLEV---------------------NII---------------DEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAA 278 (321)
Q Consensus 235 ~~~~~~---------------------~~~---------------d~~~~V~d~e~~~a~~~l~~~~Gi~~~pss~~a~a 278 (321)
|.+..+ +.- -..+.|+|+|+.++++++++++|+++||+||++++
T Consensus 312 psn~eR~l~~~~~~~~~~v~~~m~~l~~~gg~~~~~~~~~~~~~~f~a~~vsD~ei~~ai~~~~~~~G~~~dPhtAva~a 391 (462)
T PRK09225 312 SSNFERLLFDLLGRDAAAVEELMEDLEEKGEYDLSDEELAALREDFSAGSVSDEETLATIREVYEEYGYLIDPHTAVAYK 391 (462)
T ss_pred CCcHHHHHHHhcCCcHHHHHHHHHHHHHcCCcccCHHHHHHhhhcceEEEECHHHHHHHHHHHHHhCCEEECchHHHHHH
Confidence 333221 000 15699999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCEEEEEecCCCCCCHHHHH
Q 020805 279 AAIEIAKRPENAGKLIVVCSQFACITSDSWLI 310 (321)
Q Consensus 279 a~~~~~~~~~~~~~~vv~i~tgg~~~~~~~~~ 310 (321)
++.++.+ +++++|++.|+....+.+.+.
T Consensus 392 a~~~~~~----~~~~~V~l~Ta~p~Kf~~~v~ 419 (462)
T PRK09225 392 AAREYLD----PGEPGVVLSTAHPAKFPEVVE 419 (462)
T ss_pred HHHHhhC----CCCCEEEEecCCccCCHHHHH
Confidence 9988632 456899999996554444443
No 83
>cd01560 Thr-synth_2 Threonine synthase catalyzes the final step of threonine biosynthesis. The conversion of O-phosphohomoserine into threonine and inorganic phosphate is pyridoxal 5'-phosphate dependent. The Thr-synth_1 CD includes members from higher plants, cyanobacteria, archaebacteria and eubacterial groups. This CD, Thr-synth_2, includes enzymes from fungi and eubacterial groups, as well as, metazoan threonine synthase-like proteins.
Probab=100.00 E-value=2.6e-32 Score=259.77 Aligned_cols=275 Identities=15% Similarity=0.064 Sum_probs=206.1
Q ss_pred CcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHH---HHHHHHcCCCCCCCeEEEeeCCChHHHHH-HHHHHHcCC
Q 020805 19 TPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSM---ISDAEAKGLITPGESVLIEPTSGNTGIGL-AFMAAAKQY 94 (321)
Q Consensus 19 TPL~~~~~l~~~~g~~v~~K~E~~~ptGS~K~R~a~~~---l~~a~~~g~~~~g~~~vv~~SsGN~g~Al-A~aa~~~G~ 94 (321)
+||.++. .++|++..+++||||||||++..+ +..++++.. +...|+++||||+|.|+ +.++.+.|+
T Consensus 88 ~pl~~l~-------~~~~~lELfhGPT~sFKD~a~~~l~~l~~~~~~~~~---~~~~Il~ATSGdTG~Aa~aaf~~~~gi 157 (460)
T cd01560 88 APLVQLG-------DNLYVLELFHGPTLAFKDMALQFLGRLLEYFLKRRN---ERITILVATSGDTGSAAIEGFRGKPNV 157 (460)
T ss_pred cceEEeC-------CCcEEeeeeeCCCcchHHhHHHHHHHHHHHHHHhcC---CCeEEEEcCCCcHHHHHHHHHhCcCCC
Confidence 7887765 268999999999999999999865 666765411 23789999999999994 888999999
Q ss_pred eEEEEecCC-CCHHHHHHHHHcCC---EEEEeCCCCChhHHHHHHHHHHHhC-----CCeEEcCCCCCCcchhhhhhchH
Q 020805 95 RLIITMPAS-MSLERRIILRAFGA---ELVLTDPAKGMKGAVQKAEEILAKT-----PNAYMLQQFENPANPKIHYETTG 165 (321)
Q Consensus 95 ~~~ivvp~~-~~~~~~~~~~~~Ga---~v~~~~~~~~~~~~~~~a~~~~~~~-----~~~~~~~~~~~~~~~~~g~~~~~ 165 (321)
+|+|++|.+ +++.+..+|..+|+ +++.+++ ++|++.+.++++.++. -+++-.+.. |+.. +.+|.+++
T Consensus 158 ~v~Vl~P~g~vs~~Q~~Qm~t~g~~Nv~vi~V~G--~fDd~q~~vk~~~~d~~~~~~~~l~saNSi-N~~R-i~~Q~~yy 233 (460)
T cd01560 158 DVVVLYPKGGVSPIQELQMTTLPADNVHVVAVEG--DFDDCQSLVKALFADEDFNKKLKLSSANSI-NWAR-ILAQIVYY 233 (460)
T ss_pred EEEEEEcCCCCCHHHHHHHHhhCCCceEEEEEcC--CHHHHHHHHHHHhcChhhHhcceEEEEecc-CHHH-HHHHHHHH
Confidence 999999996 99999999999996 7888876 5899999988876542 134444543 6665 68999999
Q ss_pred HHHHhhhCC----CCCEEEEecCCchhHHHHHHHHHhcCCCcEEEEEecCCCCc---cCCCCCCC--cccccccCCC---
Q 020805 166 PELWKGSGG----RIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPV---LSGGKPGP--HKIQGIGAGF--- 233 (321)
Q Consensus 166 ~Ei~~ql~~----~~d~vv~p~G~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~---~~~g~~~~--~~~~gl~~~~--- 233 (321)
+|+++|+.+ .||.|+||+|+||++.|.+.+.+.-.|-.++|+++.+.... +..|...+ .....+.+++
T Consensus 234 f~a~~ql~~~~~~~p~~~vVPtGnfgni~a~~~Ak~mGlpi~kli~a~n~n~il~~~~~~G~y~~~~~~~~T~spamdI~ 313 (460)
T cd01560 234 FYAYLQLLKRGEGEKVEFSVPTGNFGNILAGYYAKKMGLPIKKLIVATNENDVLRRFFKTGRYDRRESLKQTLSPAMDIL 313 (460)
T ss_pred HHHHHHhccccCCCCCEEEEECCcHHHHHHHHHHHHcCCCCccEEEEeCCChHHHHHHHcCCCcCCCCCCCCcCchhhcC
Confidence 999999963 58999999999999999999976555767999976554411 12233211 1112222211
Q ss_pred Cccccccc------------------------------------ccCEEEEeCHHHHHHHHHHHHHhcCCeEecchHHHH
Q 020805 234 VPGVLEVN------------------------------------IIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAA 277 (321)
Q Consensus 234 ~~~~~~~~------------------------------------~~d~~~~V~d~e~~~a~~~l~~~~Gi~~~pss~~a~ 277 (321)
.|.++.+- ..-..+.|+|+|+.++++++++++|+++||+||+++
T Consensus 314 ~psn~eR~L~~l~~~~g~~~~~~m~~~~~~g~~~~~~~~l~~~~~~f~a~~vsD~ei~~~i~~~~~~~G~~vdPhtAva~ 393 (460)
T cd01560 314 KSSNFERLLFLLAGRDRTKVKMLMEEFEATGFLSLPKEELKKLREDFSSGSVSDEETLETIREVYEETGYLIDPHTAVGV 393 (460)
T ss_pred CCCCHHHHHHHHhCCCHHHHHHHHHHHHhcCCEecCHHHHHhhhccceEEEECHHHHHHHHHHHHHhcCEEECchHHHHH
Confidence 23332110 001568999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCEEEEEecCCCCCCHHHHH
Q 020805 278 AAAIEIAKRPENAGKLIVVCSQFACITSDSWLI 310 (321)
Q Consensus 278 aa~~~~~~~~~~~~~~vv~i~tgg~~~~~~~~~ 310 (321)
+++.++.++ +++++|++.|+....+.+-+.
T Consensus 394 aa~~~~~~~---~~~~~V~l~Ta~p~Kf~~~v~ 423 (460)
T cd01560 394 RAAERVRKS---PGTPGVVLSTAHPAKFPEAVK 423 (460)
T ss_pred HHHHHHHhc---cCCCEEEEecCCcccCHHHHH
Confidence 999887654 356789999995544444433
No 84
>COG1350 Predicted alternative tryptophan synthase beta-subunit (paralog of TrpB) [General function prediction only]
Probab=100.00 E-value=1.9e-32 Score=240.34 Aligned_cols=293 Identities=23% Similarity=0.249 Sum_probs=225.8
Q ss_pred hccCCcceecccccCCCC--ceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEee-CCChHHHHHHHHHHH
Q 020805 15 LIGNTPLVYLNNIVNGCV--ARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEP-TSGNTGIGLAFMAAA 91 (321)
Q Consensus 15 ~~~~TPL~~~~~l~~~~g--~~v~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~-SsGN~g~AlA~aa~~ 91 (321)
.-.+|||+|.++|.+.++ ++||+|.|+..||||+|...|....-.+...|. ..|+|= ..|.+|.|+++||+.
T Consensus 75 ~gRPTPL~RA~~LE~~L~tparIYyK~Eg~tptGSHKiNTAlAqaYyak~eg~-----~rl~TETGAGQWGsAlslA~al 149 (432)
T COG1350 75 IGRPTPLIRAKNLEEALGTPARIYYKYEGVTPTGSHKINTALAQAYYAKKEGA-----KRLTTETGAGQWGSALSLAAAL 149 (432)
T ss_pred hCCCCchhhhhhHHHHhCCCcEEEEEecccCCCCCCCcchHHHHHHHHHhcCc-----eeeecccCCchHHHHHHHHHHH
Confidence 336899999999997665 799999999999999999999999999998887 445554 559999999999999
Q ss_pred cCCeEEEEecCC---CCHHHHHHHHHcCCEEEEeCCCCC----------------hhHHHHHHHHHHHhCCCeEEcCCCC
Q 020805 92 KQYRLIITMPAS---MSLERRIILRAFGAELVLTDPAKG----------------MKGAVQKAEEILAKTPNAYMLQQFE 152 (321)
Q Consensus 92 ~G~~~~ivvp~~---~~~~~~~~~~~~Ga~v~~~~~~~~----------------~~~~~~~a~~~~~~~~~~~~~~~~~ 152 (321)
+|++|+|||-.. ..+.+..+|+.|||+|+..+.+.. .-=++..|.|.+-++++..|....-
T Consensus 150 f~lk~~V~Mvr~Sy~qKpyRk~lM~~yGa~V~pSPS~~Te~Grk~l~e~p~hPGSLGIAISEAiE~al~~~~~kY~lGSV 229 (432)
T COG1350 150 FGLKATVFMVRVSYYQKPYRKYLMELYGAEVVPSPSELTEFGRKILKEDPDHPGSLGIAISEAIEYALKNENTKYSLGSV 229 (432)
T ss_pred hCceeEEEEEehhhhcchHHHHHHHHhCCeecCCCcchhHHHHHHHhcCCCCCchhHHHHHHHHHHHHhCCCceecchhH
Confidence 999999999874 467788899999999998875321 1124556666666654445543322
Q ss_pred CCcchhhhhhchHHHHHhhh---CCCCCEEEEecCCchhHHHHHHHHHh---cC-CCcEEEEEecCCCCccCCCCCC---
Q 020805 153 NPANPKIHYETTGPELWKGS---GGRIDALVSGIGTGGTITGAGKFLKE---KN-PNIKLYGIEPTESPVLSGGKPG--- 222 (321)
Q Consensus 153 ~~~~~~~g~~~~~~Ei~~ql---~~~~d~vv~p~G~Gg~~aGi~~~~k~---~~-~~~~vigv~~~~~~~~~~g~~~--- 222 (321)
-+. .+.|+..+|.|..+|+ +..||+++-|||+|++++|+..-|-. .+ ...++|+|+|..++.+..|+..
T Consensus 230 lnh-vllhQTViGlEakkQle~~~e~PDv~igcvGGGSNfag~~yPfi~d~l~g~~~~~fiAvep~a~P~lT~GeY~YD~ 308 (432)
T COG1350 230 LNH-VLLHQTVIGLEAKKQLEQAGEDPDVIIGCVGGGSNFAGLTYPFIGDKLRGKKETRFIAVEPKACPKLTKGEYRYDF 308 (432)
T ss_pred HHH-HHHHHHHHhHHHHHHHHhcCCCCCEEEEeccCCCccccccchhhhhhhcCCceeEEEEeCCccCCccccceeeccC
Confidence 222 2579999999996655 56799999999999999999876632 12 2389999999999998765531
Q ss_pred -------C-cccccccCCCCccccc-----------------ccccCEEEEeCHHHHHHHHHHHHHhcCCeEecchHHHH
Q 020805 223 -------P-HKIQGIGAGFVPGVLE-----------------VNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAA 277 (321)
Q Consensus 223 -------~-~~~~gl~~~~~~~~~~-----------------~~~~d~~~~V~d~e~~~a~~~l~~~~Gi~~~pss~~a~ 277 (321)
+ ..+-.||.+.+|..+. ..-+-+....+.+|++++.+.|++.|||+.-|.|+.|+
T Consensus 309 gDtagltPllKMyTlGhd~vpPpihAgGLRYHG~aPtls~L~~~Giv~a~ay~Q~Evfeaa~lFa~~EGiVPAPEsaHAi 388 (432)
T COG1350 309 GDTAGLTPLLKMYTLGHDYVPPPIHAGGLRYHGVAPTLSLLVKEGIVEARAYDQEEVFEAAVLFARTEGIVPAPESAHAI 388 (432)
T ss_pred CchhccchhhhhhccCCCccCCCcccccccccCcChHHHHHHHcCcccceecChHHHHHHHHHHHHhcCCccCCcchhhH
Confidence 1 1345666666554432 23344688899999999999999999999999999999
Q ss_pred HHHHHHHhcCC--CCCCEEEEEecC-CCCCCHHHHHhhc
Q 020805 278 AAAIEIAKRPE--NAGKLIVVCSQF-ACITSDSWLIAIT 313 (321)
Q Consensus 278 aa~~~~~~~~~--~~~~~vv~i~tg-g~~~~~~~~~~~~ 313 (321)
.++++.+.+.+ .+.+.|++-++| |.+|.+.|-+...
T Consensus 389 ~~aid~A~~a~~~geekvI~fnlSGHGllDL~~Y~~yl~ 427 (432)
T COG1350 389 KAAIDEALKAREEGEEKVILFNLSGHGLLDLSAYDKYLE 427 (432)
T ss_pred HHHHHHHHhccccCceeEEEEeccCccccchhhHHHHhh
Confidence 99999876654 445678888888 7788887766543
No 85
>KOG1395 consensus Tryptophan synthase beta chain [Amino acid transport and metabolism]
Probab=99.97 E-value=2.2e-29 Score=222.82 Aligned_cols=291 Identities=22% Similarity=0.229 Sum_probs=208.5
Q ss_pred ccCCcceecccccCCC--CceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcC
Q 020805 16 IGNTPLVYLNNIVNGC--VARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQ 93 (321)
Q Consensus 16 ~~~TPL~~~~~l~~~~--g~~v~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~AlA~aa~~~G 93 (321)
-.+|||++.++|.+.+ |++||+|+|++||+||+|...+...+..+.+.|+ +..|.+...|.||.|+|.+|+++|
T Consensus 120 gRpspL~~AkRLte~~q~ga~IylKrEdlnh~GsHKiNnav~QallakrlGk----knviaETGAGQhGvatA~a~a~FG 195 (477)
T KOG1395|consen 120 GRPSPLIRAKRLTEHCQTGARIYLKREDLNHTGSHKINNAVAQALLAKRLGK----KNVIAETGAGQHGVATATACAKFG 195 (477)
T ss_pred CCCchhHHHHHHHHHhCCCCEEEEEecCCCccccCCcccHHHHHHHHHHhcc----cceeeccCCCccchHHHHHHHHhC
Confidence 3569999999999765 4799999999999999999999999999998887 344556677999999999999999
Q ss_pred CeEEEEecCC---CCHHHHHHHHHcCCEEEEeCCC-CChhHHHHHH-HHHHHhCCCeEEcC-CCCCC----cchhhhhhc
Q 020805 94 YRLIITMPAS---MSLERRIILRAFGAELVLTDPA-KGMKGAVQKA-EEILAKTPNAYMLQ-QFENP----ANPKIHYET 163 (321)
Q Consensus 94 ~~~~ivvp~~---~~~~~~~~~~~~Ga~v~~~~~~-~~~~~~~~~a-~~~~~~~~~~~~~~-~~~~~----~~~~~g~~~ 163 (321)
++|+|+|-.+ ...-++-+|+.+||+|+.+... ....++...+ +.+....+-.+|+- .-..| ......+.+
T Consensus 196 l~C~v~mgAed~~rqalnvfrmrllGAkV~pv~sGt~tLrda~sea~r~wvt~~ett~y~~gs~~gphp~pt~vr~fhsv 275 (477)
T KOG1395|consen 196 LDCTVYMGAEDYRRQALNVFRMRLLGAKVHPVTSGTRTLRDATSEAGRLWVTNSETTHYAAGSAIGPHPYPTVVRTFHSV 275 (477)
T ss_pred CceEEEechhHHHHHHHHHHHHHHhCceEeecCCCceehhcccchhhhhhhhhhheeeeeecccCCCCCcHHHHHHHHHH
Confidence 9999999874 4677888999999999988752 1223332222 22222222233332 21222 122245678
Q ss_pred hHHHHHhhh----CCCCCEEEEecCCchhHHHHHHHHHhcCCCcEEEEEecCCCCc--------cCCCCCC---------
Q 020805 164 TGPELWKGS----GGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPV--------LSGGKPG--------- 222 (321)
Q Consensus 164 ~~~Ei~~ql----~~~~d~vv~p~G~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~--------~~~g~~~--------- 222 (321)
|+-|-..|. +..||.||.|+|+|++.+|+..-|..- ..++.|+|+..+... +..+...
T Consensus 276 Ig~Et~~Q~me~~g~~PD~vvaCvGGGSN~~Glf~pF~~d-k~v~~igveaagdg~dtp~hsatltagd~Gv~hG~~ty~ 354 (477)
T KOG1395|consen 276 IGKETKIQQMEKFGKLPDAVVACVGGGSNSAGLFSPFIRD-KSVGMIGVEAAGDGVDTPKHSATLTAGDVGVFHGVTTYV 354 (477)
T ss_pred HhHHHHHHHHHHhCCCCCeEEEeccCCCccccccchhhcc-chhheeeeeecccccCCcchhceeecccccccccceeee
Confidence 888886664 346999999999999999999888753 347888888766431 1112211
Q ss_pred ----------Cccc-ccccCCCCcccc---cccccCEEEEeCHHHHHHHHHHHHHhcCCeEecchHHHHHHHHHHHhcCC
Q 020805 223 ----------PHKI-QGIGAGFVPGVL---EVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPE 288 (321)
Q Consensus 223 ----------~~~~-~gl~~~~~~~~~---~~~~~d~~~~V~d~e~~~a~~~l~~~~Gi~~~pss~~a~aa~~~~~~~~~ 288 (321)
++.+ .||...-+...+ ...-.-+.+.|+|.|.+++.++|++.|||+.-+.+..|+++..++.+..
T Consensus 355 lq~~dGqi~~phsIsAGLdYpGvgPels~~k~~grae~isitd~eclegfk~~srlEGIIPAlEssHAva~~~~lck~l- 433 (477)
T KOG1395|consen 355 LQDTDGQIFDPHSISAGLDYPGVGPELSHLKETGRAEFISITDAECLEGFKQLSRLEGIIPALESSHAVAGEAELCKTL- 433 (477)
T ss_pred eeccCCccccCCccccCCCCCCCChhHHHHHhcCceeEEecChHHHHHHHHHHHHhcccccCCchhhHHHHHHHhcccc-
Confidence 1111 222211111111 1222347999999999999999999999999999999999988887765
Q ss_pred CCCCEEEEEecC-CCCCCHHHHHhh
Q 020805 289 NAGKLIVVCSQF-ACITSDSWLIAI 312 (321)
Q Consensus 289 ~~~~~vv~i~tg-g~~~~~~~~~~~ 312 (321)
.+++.||+-+|| |..|...+.+..
T Consensus 434 ~~~k~ivi~~sGrGdkDvqS~~kyL 458 (477)
T KOG1395|consen 434 PEDKVIVINISGRGDKDVQSVAKYL 458 (477)
T ss_pred CCCcEEEEEecCCCCchHHHHHHhc
Confidence 588899999999 778877665543
No 86
>COG3048 DsdA D-serine dehydratase [Amino acid transport and metabolism]
Probab=99.95 E-value=1.6e-26 Score=201.30 Aligned_cols=297 Identities=20% Similarity=0.223 Sum_probs=238.8
Q ss_pred hhccCCcceeccccc----C----CCCceEEEEeCCCCC-CCchhhHHHHHHHH-H----HHHcCCCCCCC---------
Q 020805 14 ELIGNTPLVYLNNIV----N----GCVARIAAKLEMMEP-CSSVKDRIGYSMIS-D----AEAKGLITPGE--------- 70 (321)
Q Consensus 14 ~~~~~TPL~~~~~l~----~----~~g~~v~~K~E~~~p-tGS~K~R~a~~~l~-~----a~~~g~~~~g~--------- 70 (321)
.++-.+||++++.+- + ....++|+|++++-| +||+|.||-.|-+. + |++.|.++...
T Consensus 74 ~GiIES~lv~i~~mq~~Le~~Y~~~i~G~llLK~DshLpIsGSIKARGGIYEVL~hAE~LAle~Gll~~~DDYs~L~~~~ 153 (443)
T COG3048 74 GGIIESPLVEIPAMQKRLEKEYQQPIPGRLLLKKDSHLPISGSIKARGGIYEVLKHAEKLALEAGLLTLEDDYSILLSEE 153 (443)
T ss_pred CCeeccchhhhHHHHHHHHHHhcCCCCcceeeeccCCCCcccceeccccHHHHHHHHHHHHHhcCcccccchHHHhhcHH
Confidence 356678999876543 2 223589999999999 79999999877653 3 45667654332
Q ss_pred -------eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCC
Q 020805 71 -------SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTP 143 (321)
Q Consensus 71 -------~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~ 143 (321)
-.+...|+||.|.++-...+.+|++++|-|..++.++|.+++++.|.+|+.... +|..+.+.-++.++..|
T Consensus 154 f~~FFs~ysIaVGSTGNLGlSIGI~sA~lGF~vtVHMSADAr~WKKd~LRs~gV~ViEYe~--DY~~AVeeGRk~a~~DP 231 (443)
T COG3048 154 FKDFFSRYSIAVGSTGNLGLSIGIMSAALGFKVTVHMSADARAWKKDKLRSHGVTVVEYEQ--DYGVAVEEGRKEAESDP 231 (443)
T ss_pred HHHHHHhheEeecccCccceehhhhhhhhcceEEEEecchHHHHHHHHHHhcCceEEEecc--hhhHHHHHhhhhhccCC
Confidence 167788999999999999999999999999999999999999999999999996 45688888888888888
Q ss_pred CeEEcCCCCCCcchhhhhhchHHHHHhhhC--------CCCCEEEEecCCchhHHHHHHHHHhcC-CCcEEEEEecCCCC
Q 020805 144 NAYMLQQFENPANPKIHYETTGPELWKGSG--------GRIDALVSGIGTGGTITGAGKFLKEKN-PNIKLYGIEPTESP 214 (321)
Q Consensus 144 ~~~~~~~~~~~~~~~~g~~~~~~Ei~~ql~--------~~~d~vv~p~G~Gg~~aGi~~~~k~~~-~~~~vigv~~~~~~ 214 (321)
..||++.-.+... ..||...+..+-.|++ ..|-.|..|+|-||.-.|++.++|..+ .++.++-+||..+|
T Consensus 232 ~c~FiDDE~S~~L-FLGYaVAa~Rlk~Q~d~~gi~vd~ehPLfVylPCGVGGgPGGVafGLKl~fgd~VhcfFaEPthsP 310 (443)
T COG3048 232 NCFFIDDENSRTL-FLGYAVAAQRLKKQFDEQGIVVDAEHPLFVYLPCGVGGGPGGVAFGLKLAFGDHVHCFFAEPTHSP 310 (443)
T ss_pred ceEEecccchhhh-hhhHHHHHHHHHHHHHhcCceecCCCceEEEeecCCCCCcchhhhhhHhhhcCceEEEEecCCCCh
Confidence 9999987655444 6899999999988874 246788999999999999999999875 57999999999999
Q ss_pred ccCC---------------CCCCCcccccccCCCCcccc---cccccCEEEEeCHHHHHHHHHHHHHhcCCeEecchHHH
Q 020805 215 VLSG---------------GKPGPHKIQGIGAGFVPGVL---EVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGA 276 (321)
Q Consensus 215 ~~~~---------------g~~~~~~~~gl~~~~~~~~~---~~~~~d~~~~V~d~e~~~a~~~l~~~~Gi~~~pss~~a 276 (321)
++.- |..+.+..+||+.+.....+ ....+|..++|+|+..++...+|++.||+.+|||+-+.
T Consensus 311 cMlLGv~tGlHe~ISVqdiGidn~TaADGLAVgRpSgfVgr~me~lL~G~~TvdD~~ly~lL~~L~~~e~~rlEPSalAg 390 (443)
T COG3048 311 CMLLGVYTGLHEQISVQDIGIDNLTAADGLAVGRPSGFVGRAMERLLDGYYTVDDQTLYDLLGWLAQEEGIRLEPSALAG 390 (443)
T ss_pred HHHHhhhhccccceeeEeecccccccccceeecCccchHHHHHHHHhCCcEEechHHHHHHHHHHHHhcCcccCchhhhc
Confidence 8652 11233445788776533332 34678999999999999999999999999999998888
Q ss_pred HHHHHHHHhcC------------CCCCCEEEEEecCCCCCCHHHHHhhc
Q 020805 277 AAAAIEIAKRP------------ENAGKLIVVCSQFACITSDSWLIAIT 313 (321)
Q Consensus 277 ~aa~~~~~~~~------------~~~~~~vv~i~tgg~~~~~~~~~~~~ 313 (321)
+.+..++.+.. .....+-+++-|||.+.+++=++.|-
T Consensus 391 m~Gp~~~~~~~~g~~~~~~~~~~~~~natHlvWaTGG~MVPeeeM~~yl 439 (443)
T COG3048 391 MAGPQRVCASVEGYRYRHGFSAEQLNNATHLVWATGGGMVPEEEMEAYL 439 (443)
T ss_pred ccCcceeeechhHHHHHhhchhhhhcCeeEEEEecCCCcCCHHHHHHHH
Confidence 87766654211 13456889999999999999888875
No 87
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=91.33 E-value=1.3 Score=36.87 Aligned_cols=102 Identities=11% Similarity=0.076 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHcCCeE-EEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEcCCCCCCcchhh
Q 020805 81 TGIGLAFMAAAKQYRL-IITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKI 159 (321)
Q Consensus 81 ~g~AlA~aa~~~G~~~-~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 159 (321)
-|..+.++++.+|.++ .-+.+.+.-..-++.+...|.+|.++++.. +...+.+..+.+++|+.-.+..++.+.. ..
T Consensus 12 DG~~i~~~~~~~g~~~~~rv~g~dl~~~l~~~~~~~~~~ifllG~~~--~~~~~~~~~l~~~yP~l~ivg~~~g~f~-~~ 88 (172)
T PF03808_consen 12 DGMPIVWAARLLGRPLPERVTGSDLFPDLLRRAEQRGKRIFLLGGSE--EVLEKAAANLRRRYPGLRIVGYHHGYFD-EE 88 (172)
T ss_pred CCHHHHHHHHHcCCCCCcccCHHHHHHHHHHHHHHcCCeEEEEeCCH--HHHHHHHHHHHHHCCCeEEEEecCCCCC-hh
Confidence 3578999999999887 333333444555667788899999999752 4555666777777776444322222222 11
Q ss_pred hhhchHHHHHhhhC-CCCCEEEEecCCchhH
Q 020805 160 HYETTGPELWKGSG-GRIDALVSGIGTGGTI 189 (321)
Q Consensus 160 g~~~~~~Ei~~ql~-~~~d~vv~p~G~Gg~~ 189 (321)
-.. +|.+++. .+||.|++..|+.--=
T Consensus 89 ~~~----~i~~~I~~~~pdiv~vglG~PkQE 115 (172)
T PF03808_consen 89 EEE----AIINRINASGPDIVFVGLGAPKQE 115 (172)
T ss_pred hHH----HHHHHHHHcCCCEEEEECCCCHHH
Confidence 222 3333332 3699999999996543
No 88
>KOG2616 consensus Pyridoxalphosphate-dependent enzyme/predicted threonine synthase [Amino acid transport and metabolism]
Probab=91.08 E-value=0.76 Score=39.53 Aligned_cols=55 Identities=13% Similarity=0.061 Sum_probs=44.8
Q ss_pred EEEeCHHHHHHHHHHHHHhcCCeEecchHHHHHHHHHHHhcCCCCCCEEEEEecCC
Q 020805 246 VVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVCSQFA 301 (321)
Q Consensus 246 ~~~V~d~e~~~a~~~l~~~~Gi~~~pss~~a~aa~~~~~~~~~~~~~~vv~i~tgg 301 (321)
...|+++|+.++|...++..+++++|.||.++-...+.+.+.. +.-.++++-|..
T Consensus 148 se~vS~ee~~~ti~k~yes~~YiLdPHTAVav~~~~r~idkt~-ps~~~i~lstAh 202 (266)
T KOG2616|consen 148 SERVSNEETTQTIKKIYESNHYILDPHTAVAVNYHYRQIDKTQ-PSIPYICLSTAH 202 (266)
T ss_pred hhhcCcHHHHHHHHHHhccCCeeecCchHHHHHHHHHHHhccC-CCCceEEecccC
Confidence 4678999999999999999999999999999988888776543 444566666654
No 89
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=86.72 E-value=5.6 Score=33.10 Aligned_cols=120 Identities=17% Similarity=0.123 Sum_probs=67.2
Q ss_pred HHHHHHHHHHcCCeEEEEecC-CCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEcCCCCCCcchhhh
Q 020805 82 GIGLAFMAAAKQYRLIITMPA-SMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIH 160 (321)
Q Consensus 82 g~AlA~aa~~~G~~~~ivvp~-~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g 160 (321)
|..+.++++.+|.+..--++. +.-..-.+.+...+.+|.++++.. +...+.++.+.+++++.-.+..++.+.. ...
T Consensus 11 G~~l~~~~~~~~~~~~~r~~g~dl~~~ll~~~~~~~~~v~llG~~~--~~~~~~~~~l~~~yp~l~i~g~~~g~~~-~~~ 87 (171)
T cd06533 11 GIGVVWAARLLGGPLPERVTGSDLMPALLELAAQKGLRVFLLGAKP--EVLEKAAERLRARYPGLKIVGYHHGYFG-PEE 87 (171)
T ss_pred cHHHHHHHHHcCCCCCcccCcHHHHHHHHHHHHHcCCeEEEECCCH--HHHHHHHHHHHHHCCCcEEEEecCCCCC-hhh
Confidence 578899999999983222222 112344556677799999999642 3445555667777776544322222222 111
Q ss_pred hhchHHHHHhhhC-CCCCEEEEecCCchhHHHHHHHHHhcCCCcEEEEEe
Q 020805 161 YETTGPELWKGSG-GRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIE 209 (321)
Q Consensus 161 ~~~~~~Ei~~ql~-~~~d~vv~p~G~Gg~~aGi~~~~k~~~~~~~vigv~ 209 (321)
.. +|.+++. ..||.|+++.|+---=.=+ ...+...+..-+++|-
T Consensus 88 ~~----~i~~~I~~~~pdiv~vglG~PkQE~~~-~~~~~~l~~~v~~~vG 132 (171)
T cd06533 88 EE----EIIERINASGADILFVGLGAPKQELWI-ARHKDRLPVPVAIGVG 132 (171)
T ss_pred HH----HHHHHHHHcCCCEEEEECCCCHHHHHH-HHHHHHCCCCEEEEec
Confidence 11 2444442 3699999999986543322 2334334444455543
No 90
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=85.35 E-value=6.1 Score=30.57 Aligned_cols=32 Identities=19% Similarity=0.404 Sum_probs=21.2
Q ss_pred CCCEEEEecCCchhHHHHHHHHHhcCCCcEEEEEe
Q 020805 175 RIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIE 209 (321)
Q Consensus 175 ~~d~vv~p~G~Gg~~aGi~~~~k~~~~~~~vigv~ 209 (321)
.+|.+|-++|++.++.- +++...+.-+++-+.
T Consensus 58 ~~d~vid~~g~~~~~~~---~~~~l~~~G~~v~vg 89 (130)
T PF00107_consen 58 GVDVVIDCVGSGDTLQE---AIKLLRPGGRIVVVG 89 (130)
T ss_dssp SEEEEEESSSSHHHHHH---HHHHEEEEEEEEEES
T ss_pred cceEEEEecCcHHHHHH---HHHHhccCCEEEEEE
Confidence 58999999998776654 444444544555555
No 91
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=84.23 E-value=7.9 Score=35.90 Aligned_cols=52 Identities=13% Similarity=0.178 Sum_probs=40.0
Q ss_pred CCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEE
Q 020805 67 TPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAEL 119 (321)
Q Consensus 67 ~~g~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v 119 (321)
.+|.+.+|. .+|..|...+..++.+|.+++++.+...++.|++.++.+|++.
T Consensus 171 ~~g~~vlI~-G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~ 222 (355)
T cd08230 171 WNPRRALVL-GAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATY 222 (355)
T ss_pred CCCCEEEEE-CCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEE
Confidence 455555554 5799999989999999998666655555678888999999985
No 92
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=83.68 E-value=17 Score=31.33 Aligned_cols=50 Identities=26% Similarity=0.362 Sum_probs=41.7
Q ss_pred EEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeC
Q 020805 73 LIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTD 123 (321)
Q Consensus 73 vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~ 123 (321)
+|+..+|+.|..++.+....+.++++++... +....+.++..|++++..+
T Consensus 2 ~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~-~~~~~~~l~~~g~~vv~~d 51 (233)
T PF05368_consen 2 LVTGATGNQGRSVVRALLSAGFSVRALVRDP-SSDRAQQLQALGAEVVEAD 51 (233)
T ss_dssp EEETTTSHHHHHHHHHHHHTTGCEEEEESSS-HHHHHHHHHHTTTEEEES-
T ss_pred EEECCccHHHHHHHHHHHhCCCCcEEEEecc-chhhhhhhhcccceEeecc
Confidence 5777889999999999888999999999877 4556778888999998555
No 93
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=83.08 E-value=15 Score=31.32 Aligned_cols=50 Identities=16% Similarity=0.090 Sum_probs=37.0
Q ss_pred hHHHHHHHHHHHHc--CCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEE
Q 020805 50 DRIGYSMISDAEAK--GLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIIT 99 (321)
Q Consensus 50 ~R~a~~~l~~a~~~--g~~~~g~~~vv~~SsGN~g~AlA~aa~~~G~~~~iv 99 (321)
-+|..+.+..+.+. +.....+++++.-..||.|..+|......|.+++++
T Consensus 6 g~Gv~~~~~~~~~~~~~~~~l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~ 57 (200)
T cd01075 6 AYGVFLGMKAAAEHLLGTDSLEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVA 57 (200)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEE
Confidence 36777888777665 222333466777888999999999999999987744
No 94
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=82.79 E-value=23 Score=35.74 Aligned_cols=97 Identities=14% Similarity=0.244 Sum_probs=66.5
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEcCC
Q 020805 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQ 150 (321)
Q Consensus 71 ~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 150 (321)
.+++.+..|..|+.+|-.-...|++++++ +..+.+++.++.+|.+++.-+..
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvI---D~d~~~v~~~~~~g~~v~~GDat------------------------- 452 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMANKMRITVL---ERDISAVNLMRKYGYKVYYGDAT------------------------- 452 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhCCCCEEEE---ECCHHHHHHHHhCCCeEEEeeCC-------------------------
Confidence 45888999999999999988899998777 33456677777777666554432
Q ss_pred CCCCcchhhhhhchHHHHHhhhC-CCCCEEEEecCCchhHHHHHHHHHhcCCCcEEEEEe
Q 020805 151 FENPANPKIHYETTGPELWKGSG-GRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIE 209 (321)
Q Consensus 151 ~~~~~~~~~g~~~~~~Ei~~ql~-~~~d~vv~p~G~Gg~~aGi~~~~k~~~~~~~vigv~ 209 (321)
. .|++++.+ .+.|.+++..+.-....-+....|+.+|+.+|++-.
T Consensus 453 -----~---------~~~L~~agi~~A~~vv~~~~d~~~n~~i~~~~r~~~p~~~IiaRa 498 (601)
T PRK03659 453 -----Q---------LELLRAAGAEKAEAIVITCNEPEDTMKIVELCQQHFPHLHILARA 498 (601)
T ss_pred -----C---------HHHHHhcCCccCCEEEEEeCCHHHHHHHHHHHHHHCCCCeEEEEe
Confidence 1 12223321 246777777777655556667778888888887754
No 95
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=82.42 E-value=24 Score=35.85 Aligned_cols=51 Identities=16% Similarity=0.206 Sum_probs=41.0
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCC
Q 020805 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 124 (321)
Q Consensus 71 ~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~ 124 (321)
.+++.+..|..|+.+|..-...|++++++ +.++.+++.++.+|.+++.-+.
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvI---D~d~~~v~~~~~~g~~v~~GDa 451 (621)
T PRK03562 401 PRVIIAGFGRFGQIVGRLLLSSGVKMTVL---DHDPDHIETLRKFGMKVFYGDA 451 (621)
T ss_pred CcEEEEecChHHHHHHHHHHhCCCCEEEE---ECCHHHHHHHHhcCCeEEEEeC
Confidence 45888999999999999999999998887 4456778888888877765554
No 96
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=81.90 E-value=20 Score=33.19 Aligned_cols=58 Identities=21% Similarity=0.314 Sum_probs=40.1
Q ss_pred HHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEe
Q 020805 61 EAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLT 122 (321)
Q Consensus 61 ~~~g~~~~g~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~ 122 (321)
..+..+++|.. |+...+|..|.+++..|+.+|.+.+++ ..++.|++.++.+|++.++.
T Consensus 159 ~~~~~~~~g~~-VlV~G~G~vG~~a~~~a~~~G~~vi~~---~~~~~~~~~~~~~Ga~~~i~ 216 (349)
T TIGR03201 159 AVQAGLKKGDL-VIVIGAGGVGGYMVQTAKAMGAAVVAI---DIDPEKLEMMKGFGADLTLN 216 (349)
T ss_pred HHhcCCCCCCE-EEEECCCHHHHHHHHHHHHcCCeEEEE---cCCHHHHHHHHHhCCceEec
Confidence 33444666655 444445999999999999999964433 33556788888899875543
No 97
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=81.74 E-value=36 Score=33.62 Aligned_cols=50 Identities=16% Similarity=0.102 Sum_probs=41.0
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeC
Q 020805 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTD 123 (321)
Q Consensus 71 ~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~ 123 (321)
.+|+....|.-|.+.+..|+.+|-.++++ +..+.++++.+.+|++.+.++
T Consensus 166 ~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~---D~~~~rle~aeslGA~~v~i~ 215 (509)
T PRK09424 166 AKVLVIGAGVAGLAAIGAAGSLGAIVRAF---DTRPEVAEQVESMGAEFLELD 215 (509)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEE---eCCHHHHHHHHHcCCeEEEec
Confidence 56888999999999999999999864443 456788999999999976655
No 98
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=81.64 E-value=28 Score=34.70 Aligned_cols=97 Identities=22% Similarity=0.135 Sum_probs=62.8
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEcCC
Q 020805 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQ 150 (321)
Q Consensus 71 ~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 150 (321)
.+++.+..|+.|+.+|-.-+..|++++++= ..+.+.+.++.+|.+++.-+...
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId---~d~~~~~~~~~~g~~~i~GD~~~------------------------ 470 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIE---TSRTRVDELRERGIRAVLGNAAN------------------------ 470 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEE---CCHHHHHHHHHCCCeEEEcCCCC------------------------
Confidence 457889999999999998888888887763 23456666777776665554321
Q ss_pred CCCCcchhhhhhchHHHHHhhhC-CCCCEEEEecCCchhHHHHHHHHHhcCCCcEEEEEe
Q 020805 151 FENPANPKIHYETTGPELWKGSG-GRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIE 209 (321)
Q Consensus 151 ~~~~~~~~~g~~~~~~Ei~~ql~-~~~d~vv~p~G~Gg~~aGi~~~~k~~~~~~~vigv~ 209 (321)
.|++++.+ .+.|.+++.++.-....-+....++.+|+.++++..
T Consensus 471 ---------------~~~L~~a~i~~a~~viv~~~~~~~~~~iv~~~~~~~~~~~iiar~ 515 (558)
T PRK10669 471 ---------------EEIMQLAHLDCARWLLLTIPNGYEAGEIVASAREKRPDIEIIARA 515 (558)
T ss_pred ---------------HHHHHhcCccccCEEEEEcCChHHHHHHHHHHHHHCCCCeEEEEE
Confidence 12222221 245777777776554444555667777888877653
No 99
>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]
Probab=81.58 E-value=15 Score=33.31 Aligned_cols=86 Identities=23% Similarity=0.276 Sum_probs=60.0
Q ss_pred eEEEEeCCCCC-----CCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCh--HHHHHHHHHHHcCCeEEEEecCCCCH
Q 020805 34 RIAAKLEMMEP-----CSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGN--TGIGLAFMAAAKQYRLIITMPASMSL 106 (321)
Q Consensus 34 ~v~~K~E~~~p-----tGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN--~g~AlA~aa~~~G~~~~ivvp~~~~~ 106 (321)
+-++|.++.-| |-+.---.|+-|+.+-.+. ++| +.|+ --++| -|+++--.|+.+|++.+=++.++..-
T Consensus 124 ~~Li~vd~~~pl~~AAT~~VNP~TAyrmL~dfv~L---~~G-D~vI-QNganS~VG~~ViQlaka~GiktinvVRdR~~i 198 (354)
T KOG0025|consen 124 SDLIKVDKDIPLASAATLSVNPCTAYRMLKDFVQL---NKG-DSVI-QNGANSGVGQAVIQLAKALGIKTINVVRDRPNI 198 (354)
T ss_pred cceEEcCCcCChhhhheeccCchHHHHHHHHHHhc---CCC-Ceee-ecCcccHHHHHHHHHHHHhCcceEEEeecCccH
Confidence 46778877555 3344444677788877754 335 4455 33344 45666677999999999999987654
Q ss_pred -HHHHHHHHcCCEEEEeCC
Q 020805 107 -ERRIILRAFGAELVLTDP 124 (321)
Q Consensus 107 -~~~~~~~~~Ga~v~~~~~ 124 (321)
+..++++.+||+.++.+.
T Consensus 199 eel~~~Lk~lGA~~ViTee 217 (354)
T KOG0025|consen 199 EELKKQLKSLGATEVITEE 217 (354)
T ss_pred HHHHHHHHHcCCceEecHH
Confidence 446688999999999884
No 100
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=81.52 E-value=8.3 Score=32.17 Aligned_cols=114 Identities=18% Similarity=0.140 Sum_probs=73.2
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEcCC
Q 020805 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQ 150 (321)
Q Consensus 71 ~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 150 (321)
++|-.-..|+-|+++|..++.+|++++.+-|...+.. .....+.+. .+ .+ ++.++- +...++-
T Consensus 37 ~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~---~~~~~~~~~--~~----l~-------ell~~a-Div~~~~ 99 (178)
T PF02826_consen 37 KTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEE---GADEFGVEY--VS----LD-------ELLAQA-DIVSLHL 99 (178)
T ss_dssp SEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHH---HHHHTTEEE--SS----HH-------HHHHH--SEEEE-S
T ss_pred CEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhh---hccccccee--ee----hh-------hhcchh-hhhhhhh
Confidence 5677788999999999999999999998877764333 334444422 11 22 233333 5554433
Q ss_pred CCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhH--HHHHHHHHhcCCCcEEEEEe
Q 020805 151 FENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTI--TGAGKFLKEKNPNIKLYGIE 209 (321)
Q Consensus 151 ~~~~~~~~~g~~~~~~Ei~~ql~~~~d~vv~p~G~Gg~~--aGi~~~~k~~~~~~~vigv~ 209 (321)
-.++.+ ...+..|.++++ +++.+++-+|-|+.+ ..+..++++ ..+.-.+.+
T Consensus 100 plt~~T----~~li~~~~l~~m--k~ga~lvN~aRG~~vde~aL~~aL~~--g~i~ga~lD 152 (178)
T PF02826_consen 100 PLTPET----RGLINAEFLAKM--KPGAVLVNVARGELVDEDALLDALES--GKIAGAALD 152 (178)
T ss_dssp SSSTTT----TTSBSHHHHHTS--TTTEEEEESSSGGGB-HHHHHHHHHT--TSEEEEEES
T ss_pred cccccc----ceeeeeeeeecc--ccceEEEeccchhhhhhhHHHHHHhh--ccCceEEEE
Confidence 223332 356778889998 478999999999988 556667664 334444554
No 101
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=80.77 E-value=18 Score=33.49 Aligned_cols=57 Identities=26% Similarity=0.454 Sum_probs=42.3
Q ss_pred cCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEe
Q 020805 63 KGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLT 122 (321)
Q Consensus 63 ~g~~~~g~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~ 122 (321)
.+.+++|+..+|.+.+|.-|..+--.|+.+|. +++++-. +..|.+.++.+||+.+..
T Consensus 137 ~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~-~~v~~~~--s~~k~~~~~~lGAd~vi~ 193 (326)
T COG0604 137 RAGLKPGETVLVHGAAGGVGSAAIQLAKALGA-TVVAVVS--SSEKLELLKELGADHVIN 193 (326)
T ss_pred hcCCCCCCEEEEecCCchHHHHHHHHHHHcCC-cEEEEec--CHHHHHHHHhcCCCEEEc
Confidence 45677787888888889999888888999998 4443332 236666889999977655
No 102
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=80.33 E-value=14 Score=33.01 Aligned_cols=52 Identities=25% Similarity=0.277 Sum_probs=37.9
Q ss_pred CCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 020805 66 ITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 120 (321)
Q Consensus 66 ~~~g~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~ 120 (321)
..+|.. |+....|..|..++..|+.+|.+.++++ +.++.|.+.++.+|++.+
T Consensus 118 ~~~g~~-VlV~G~G~vG~~~~~~ak~~G~~~Vi~~--~~~~~r~~~a~~~Ga~~~ 169 (280)
T TIGR03366 118 DLKGRR-VLVVGAGMLGLTAAAAAAAAGAARVVAA--DPSPDRRELALSFGATAL 169 (280)
T ss_pred CCCCCE-EEEECCCHHHHHHHHHHHHcCCCEEEEE--CCCHHHHHHHHHcCCcEe
Confidence 346645 4445678999999999999999755555 445678888899998543
No 103
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=79.38 E-value=27 Score=31.53 Aligned_cols=57 Identities=21% Similarity=0.251 Sum_probs=41.1
Q ss_pred HcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q 020805 62 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 121 (321)
Q Consensus 62 ~~g~~~~g~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~ 121 (321)
+.+.+++|...+|...+|..|.++.-.|+.+|.+.+++. .++.+.+.++.+|++-++
T Consensus 137 ~~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~---~s~~~~~~l~~~Ga~~vi 193 (329)
T cd08294 137 EICKPKAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCA---GSDDKVAWLKELGFDAVF 193 (329)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEe---CCHHHHHHHHHcCCCEEE
Confidence 345567776666666679999999989999999855443 345678888889985443
No 104
>TIGR01064 pyruv_kin pyruvate kinase. This enzyme is a homotetramer. Some forms are active only in the presence of fructose-1,6-bisphosphate or similar phosphorylated sugars.
Probab=79.30 E-value=42 Score=32.88 Aligned_cols=123 Identities=15% Similarity=0.114 Sum_probs=75.2
Q ss_pred HHHHHHHcCCeEEEEe-----------cCCCCHHHHHHHHHcCCEEEEeCCCC----ChhHHHHHHHHHHHhCCCeE---
Q 020805 85 LAFMAAAKQYRLIITM-----------PASMSLERRIILRAFGAELVLTDPAK----GMKGAVQKAEEILAKTPNAY--- 146 (321)
Q Consensus 85 lA~aa~~~G~~~~ivv-----------p~~~~~~~~~~~~~~Ga~v~~~~~~~----~~~~~~~~a~~~~~~~~~~~--- 146 (321)
+..+|+.+|+++++.. |..+....+......|++.+....+. ...++.+...+.+++-+..+
T Consensus 262 ii~aaraag~pvi~atqmLeSM~~~p~PTRAe~~dv~~~v~~G~d~v~ls~eta~G~yP~~~v~~m~~I~~~~E~~~~~~ 341 (473)
T TIGR01064 262 MIRKCNRAGKPVITATQMLDSMIKNPRPTRAEVSDVANAILDGTDAVMLSGETAKGKYPVEAVKMMAKIAKEAEKALAYL 341 (473)
T ss_pred HHHHHHHcCCCEEEEChhhhhhhcCCCCCcccHHHHHHHHHcCCCEEEEcchhhcCCCHHHHHHHHHHHHHHHHhccchh
Confidence 4567999999999876 45556677777778899999886532 12345555555444322111
Q ss_pred --EcCCCC-CC--cchhhhhhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHHhcCCCcEEEEEecCCC
Q 020805 147 --MLQQFE-NP--ANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTES 213 (321)
Q Consensus 147 --~~~~~~-~~--~~~~~g~~~~~~Ei~~ql~~~~d~vv~p~G~Gg~~aGi~~~~k~~~~~~~vigv~~~~~ 213 (321)
|-.+.. .. ..........+.++.+.+ +.++||+.+-+|.++--+++ ..|.+.|+++.+...
T Consensus 342 ~~~~~~~~~~~~~~~~~~~ia~~a~~~a~~~--~akaIVv~T~SG~TA~~vSr----~rp~~PIiAvT~~~~ 407 (473)
T TIGR01064 342 TNFNDRKNSDPKPSTITEAIALSAVEAAEKL--DAKAIVVLTESGRTARLLSK----YRPNAPIIAVTPNER 407 (473)
T ss_pred hhhhhhhcccccCCChHHHHHHHHHHHHhhc--CCCEEEEEcCChHHHHHHHh----hCCCCCEEEEcCCHH
Confidence 101100 00 011122334444666666 47899999999998765554 469999999996554
No 105
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=78.88 E-value=18 Score=30.28 Aligned_cols=98 Identities=12% Similarity=0.089 Sum_probs=56.7
Q ss_pred HHHHHHHHHHcCCeEEEEecC-CCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEcCCCCCCcchhhh
Q 020805 82 GIGLAFMAAAKQYRLIITMPA-SMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIH 160 (321)
Q Consensus 82 g~AlA~aa~~~G~~~~ivvp~-~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g 160 (321)
|..+.++++.+|.+..--++. +.-..-.+.....|.+|.++++. .....+.++.+.+++|+.-... ++.+..+. -
T Consensus 13 G~~iv~~~r~~g~~~~~Rv~G~dl~~~l~~~~~~~~~~vfllG~~--~~v~~~~~~~l~~~yP~l~i~g-~~g~f~~~-~ 88 (177)
T TIGR00696 13 GIGVVWGLKLLGYPQQSRVAGPDLMEELCQRAGKEKLPIFLYGGK--PDVLQQLKVKLIKEYPKLKIVG-AFGPLEPE-E 88 (177)
T ss_pred cHHHHHHHHHcCCCCCCccChHHHHHHHHHHHHHcCCeEEEECCC--HHHHHHHHHHHHHHCCCCEEEE-ECCCCChH-H
Confidence 477899999999764222221 11123344556788899999964 2445566677777776543322 11122211 1
Q ss_pred hhchHHHHHhhhC-CCCCEEEEecCCch
Q 020805 161 YETTGPELWKGSG-GRIDALVSGIGTGG 187 (321)
Q Consensus 161 ~~~~~~Ei~~ql~-~~~d~vv~p~G~Gg 187 (321)
-.+|.+++. ..+|.++|+.|+--
T Consensus 89 ----~~~i~~~I~~s~~dil~VglG~Pk 112 (177)
T TIGR00696 89 ----RKAALAKIARSGAGIVFVGLGCPK 112 (177)
T ss_pred ----HHHHHHHHHHcCCCEEEEEcCCcH
Confidence 123444442 35999999999854
No 106
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=78.68 E-value=31 Score=32.72 Aligned_cols=55 Identities=25% Similarity=0.347 Sum_probs=40.1
Q ss_pred HcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEE
Q 020805 62 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAEL 119 (321)
Q Consensus 62 ~~g~~~~g~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v 119 (321)
++..+.+|...+| ..+|.-|..++..|+.+|.+.+++.. ..+.|++..+.+|++.
T Consensus 179 ~~~~~~~g~~VlV-~G~G~iG~~aiqlAk~~Ga~~vi~~d--~~~~r~~~a~~~Ga~~ 233 (393)
T TIGR02819 179 VTAGVGPGSTVYI-AGAGPVGLAAAASAQLLGAAVVIVGD--LNPARLAQARSFGCET 233 (393)
T ss_pred HhcCCCCCCEEEE-ECCCHHHHHHHHHHHHcCCceEEEeC--CCHHHHHHHHHcCCeE
Confidence 3445666655455 67788999988899999988766432 2467888889999974
No 107
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=77.46 E-value=13 Score=34.10 Aligned_cols=59 Identities=20% Similarity=0.131 Sum_probs=44.7
Q ss_pred cCCCCCCCeEEEeeCC---ChHHHHHHHHHHHcCCeEEEEecCCC--CHHHHHHHHHcCCEEEEeC
Q 020805 63 KGLITPGESVLIEPTS---GNTGIGLAFMAAAKQYRLIITMPASM--SLERRIILRAFGAELVLTD 123 (321)
Q Consensus 63 ~g~~~~g~~~vv~~Ss---GN~g~AlA~aa~~~G~~~~ivvp~~~--~~~~~~~~~~~Ga~v~~~~ 123 (321)
.|.+. | .+|+-... +|.+.++..+++++|++++++.|+.. ++..++.++..|+++..+.
T Consensus 145 ~g~l~-g-~~va~vGD~~~~~v~~Sl~~~~a~~g~~v~~~~P~~~~~~~~~~~~~~~~G~~v~~~~ 208 (301)
T TIGR00670 145 FGRLD-G-LKIALVGDLKYGRTVHSLAEALTRFGVEVYLISPEELRMPKEILEELKAKGIKVRETE 208 (301)
T ss_pred hCCCC-C-CEEEEEccCCCCcHHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHcCCEEEEEC
Confidence 45443 2 44555555 58999999999999999999999964 5555677777899988776
No 108
>PRK13656 trans-2-enoyl-CoA reductase; Provisional
Probab=77.27 E-value=46 Score=31.66 Aligned_cols=58 Identities=19% Similarity=0.181 Sum_probs=37.2
Q ss_pred CCCCCCCchhhHHHHHHHHHHHHcCCCCCC-CeEEEeeCCChHHHH--HHHHHHHcCCeEEEEe
Q 020805 40 EMMEPCSSVKDRIGYSMISDAEAKGLITPG-ESVLIEPTSGNTGIG--LAFMAAAKQYRLIITM 100 (321)
Q Consensus 40 E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g-~~~vv~~SsGN~g~A--lA~aa~~~G~~~~ivv 100 (321)
=+-+|.|.-+ -...+|.....+|.+..| ...+|+..++..|.| +|.+. ..|...+++.
T Consensus 13 ~~~hp~gc~~--~v~~qi~~~~~~~~~~~ggK~aLVTGaSsGIGlA~~IA~al-~~GA~Vi~v~ 73 (398)
T PRK13656 13 TTAHPVGCEA--NVKEQIEYVKAQGPIANGPKKVLVIGASSGYGLASRIAAAF-GAGADTLGVF 73 (398)
T ss_pred CCCCCHHHHH--HHHHHHHHHHhcCCcCCCCCEEEEECCCchHhHHHHHHHHH-HcCCeEEEEe
Confidence 3567877643 355677777788877444 455666666666666 45555 6788776664
No 109
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=76.96 E-value=5.4 Score=32.53 Aligned_cols=42 Identities=17% Similarity=0.079 Sum_probs=33.2
Q ss_pred EEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCC
Q 020805 73 LIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGA 117 (321)
Q Consensus 73 vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga 117 (321)
|....+||+|.|+|...+..|.+++++.++. ...+.++..+-
T Consensus 2 I~ViGaG~~G~AlA~~la~~g~~V~l~~~~~---~~~~~i~~~~~ 43 (157)
T PF01210_consen 2 IAVIGAGNWGTALAALLADNGHEVTLWGRDE---EQIEEINETRQ 43 (157)
T ss_dssp EEEESSSHHHHHHHHHHHHCTEEEEEETSCH---HHHHHHHHHTS
T ss_pred EEEECcCHHHHHHHHHHHHcCCEEEEEeccH---HHHHHHHHhCC
Confidence 5567899999999999999999999997754 55556655444
No 110
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=76.75 E-value=18 Score=25.55 Aligned_cols=50 Identities=20% Similarity=0.090 Sum_probs=38.1
Q ss_pred EEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC-----H----HHHHHHHHcCCEEEEe
Q 020805 73 LIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-----L----ERRIILRAFGAELVLT 122 (321)
Q Consensus 73 vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~-----~----~~~~~~~~~Ga~v~~~ 122 (321)
++.-.+|..|.-+|.+.+.+|.+++++.+.... + .-.+.++..|.+++.-
T Consensus 2 vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~ 60 (80)
T PF00070_consen 2 VVVIGGGFIGIELAEALAELGKEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVEVHTN 60 (80)
T ss_dssp EEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEEES
T ss_pred EEEECcCHHHHHHHHHHHHhCcEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCEEEeC
Confidence 566789999999999999999999999877532 1 2244667777777643
No 111
>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions. The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....
Probab=76.07 E-value=6.5 Score=36.78 Aligned_cols=55 Identities=22% Similarity=0.142 Sum_probs=42.9
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCC
Q 020805 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPA 125 (321)
Q Consensus 71 ~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~ 125 (321)
..++..+||..+.-+|+.+-.++=.-.|++|.-+...-...+...|+++++++-+
T Consensus 41 ~~~~~~~sgt~Al~~al~~l~~~~gdeVi~p~~t~~~~~~ai~~~G~~pv~~Di~ 95 (363)
T PF01041_consen 41 KYAVAVSSGTSALHLALRALGLGPGDEVIVPAYTFPATASAILWAGAEPVFVDID 95 (363)
T ss_dssp SEEEEESSHHHHHHHHHHHTTGGTTSEEEEESSS-THHHHHHHHTT-EEEEE-BE
T ss_pred CeEEEeCChhHHHHHHHHhcCCCcCceEecCCCcchHHHHHHHHhccEEEEEecc
Confidence 5688889999988888888444444889999988888899999999999999854
No 112
>PRK14030 glutamate dehydrogenase; Provisional
Probab=75.84 E-value=19 Score=34.79 Aligned_cols=53 Identities=11% Similarity=-0.020 Sum_probs=40.1
Q ss_pred hhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEec
Q 020805 49 KDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMP 101 (321)
Q Consensus 49 K~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp 101 (321)
=-||..+.+..+.+..-....+.+|+.-..||-|..+|.....+|.+++.+..
T Consensus 207 Tg~Gv~~~~~~~~~~~g~~l~g~~vaIQGfGnVG~~aA~~L~e~GakvVavSD 259 (445)
T PRK14030 207 TGFGALYFVHQMLETKGIDIKGKTVAISGFGNVAWGAATKATELGAKVVTISG 259 (445)
T ss_pred cHHHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEc
Confidence 34688888877765432344457888899999999999998888988888644
No 113
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=75.44 E-value=70 Score=29.78 Aligned_cols=51 Identities=20% Similarity=0.235 Sum_probs=41.7
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHH-cCCEEEEeCC
Q 020805 72 VLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRA-FGAELVLTDP 124 (321)
Q Consensus 72 ~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~-~Ga~v~~~~~ 124 (321)
+|+....|.-|...+..++.+|...+|++ +.++.|+++.+. .|+++.....
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~--d~~~~Rl~~A~~~~g~~~~~~~~ 222 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVV--DRSPERLELAKEAGGADVVVNPS 222 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEe--CCCHHHHHHHHHhCCCeEeecCc
Confidence 68889999999999999999999998888 445788888877 7777666553
No 114
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=75.08 E-value=30 Score=31.60 Aligned_cols=56 Identities=29% Similarity=0.388 Sum_probs=40.5
Q ss_pred HHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 020805 61 EAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 120 (321)
Q Consensus 61 ~~~g~~~~g~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~ 120 (321)
.+...+.+|...+|...+|..|.+++..|+.+|.+++++... . +.+.++.+|++.+
T Consensus 170 ~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~~vi~~~~~---~-~~~~~~~~g~~~~ 225 (350)
T cd08274 170 LERAGVGAGETVLVTGASGGVGSALVQLAKRRGAIVIAVAGA---A-KEEAVRALGADTV 225 (350)
T ss_pred HhhcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCc---h-hhHHHHhcCCeEE
Confidence 345556777676666667999999999999999996655432 2 6667778888643
No 115
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=74.15 E-value=41 Score=33.21 Aligned_cols=51 Identities=16% Similarity=0.098 Sum_probs=40.7
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCC
Q 020805 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 124 (321)
Q Consensus 71 ~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~ 124 (321)
.+++.-..|..|++.+..++.+|..++++ +....++++.+.+|++.+.++.
T Consensus 165 akVlViGaG~iGl~Aa~~ak~lGA~V~v~---d~~~~rle~a~~lGa~~v~v~~ 215 (511)
T TIGR00561 165 AKVLVIGAGVAGLAAIGAANSLGAIVRAF---DTRPEVKEQVQSMGAEFLELDF 215 (511)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEE---eCCHHHHHHHHHcCCeEEeccc
Confidence 45777789999999999999999875555 3345578899999999977763
No 116
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=73.54 E-value=26 Score=31.81 Aligned_cols=57 Identities=19% Similarity=0.300 Sum_probs=41.2
Q ss_pred HcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q 020805 62 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 121 (321)
Q Consensus 62 ~~g~~~~g~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~ 121 (321)
+.+.+++|...+|...+|--|.+++..|+..|.+.+++.. +..|.+.++.+|++.++
T Consensus 132 ~~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~---s~~~~~~~~~lGa~~vi 188 (325)
T TIGR02825 132 EICGVKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAG---SDEKVAYLKKLGFDVAF 188 (325)
T ss_pred HHhCCCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCCEEE
Confidence 4455677766556665788999999999999997555433 45678888889986544
No 117
>PF00764 Arginosuc_synth: Arginosuccinate synthase; InterPro: IPR001518 Argininosuccinate synthase (6.3.4.5 from EC) (AS) is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate [, ]. In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterised by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity.; GO: 0004055 argininosuccinate synthase activity, 0005524 ATP binding, 0006526 arginine biosynthetic process; PDB: 1K97_A 1KP2_A 1K92_A 1KP3_A 2NZ2_A 1VL2_A 1J1Z_D 1KOR_C 1J20_D 1KH2_C ....
Probab=73.32 E-value=39 Score=32.11 Aligned_cols=127 Identities=15% Similarity=0.168 Sum_probs=69.6
Q ss_pred EEeeCCC-hHHHHHHHHHHHcCCeEEEEecC-CCC----HHHHHHHHHcCC-EEEEeCCCCChhHHHHHHHHHHHhCCCe
Q 020805 73 LIEPTSG-NTGIGLAFMAAAKQYRLIITMPA-SMS----LERRIILRAFGA-ELVLTDPAKGMKGAVQKAEEILAKTPNA 145 (321)
Q Consensus 73 vv~~SsG-N~g~AlA~aa~~~G~~~~ivvp~-~~~----~~~~~~~~~~Ga-~v~~~~~~~~~~~~~~~a~~~~~~~~~~ 145 (321)
|+.+|+| .+...+.+...+.+++++.|.-+ ..+ ..-.+....+|| +++.++... +-+.+.+....+.+ .
T Consensus 1 VLAySGGLDTS~~l~~L~e~~~~~Via~~aDlGq~~~d~~~i~~kA~~~Ga~~~~vvD~r~--ef~~~~i~~aI~an--A 76 (388)
T PF00764_consen 1 VLAYSGGLDTSVILKWLKEEGGYEVIAVTADLGQPDEDLEAIEEKALKLGASKHIVVDARD--EFAEDYIFPAIKAN--A 76 (388)
T ss_dssp EEE--SSHHHHHHHHHHHHTTTEEEEEEEEESSST-S-HHHHHHHHHHHT-SEEEEEE-HH--HHHHHTHHHHHHTT---
T ss_pred CeeeCCChHHHHHHHHHHhhcCceEEEEEEECCCcHHHHHHHHHHHHhcCCceeeecchHH--HHHHHHHHHHHHHH--H
Confidence 4567777 46667777777777888877643 333 233446788999 999988521 11222233333332 3
Q ss_pred EEcCCCCC---CcchhhhhhchHHHHHhhhCCCCCEEEE-ecCCchhHHHHHHHHHhcCCCcEEEE
Q 020805 146 YMLQQFEN---PANPKIHYETTGPELWKGSGGRIDALVS-GIGTGGTITGAGKFLKEKNPNIKLYG 207 (321)
Q Consensus 146 ~~~~~~~~---~~~~~~g~~~~~~Ei~~ql~~~~d~vv~-p~G~Gg~~aGi~~~~k~~~~~~~vig 207 (321)
.|-..|-. ...|+ ......|+.++. ..++|.. +.|.|--..=.-.+++.+.|+.+|++
T Consensus 77 ~Yeg~YpL~tsl~Rpl--Ia~~~v~~A~~~--ga~~vaHG~TgkGNDqvRFe~~~~al~P~l~via 138 (388)
T PF00764_consen 77 LYEGRYPLSTSLARPL--IAKKLVEVAREE--GADAVAHGCTGKGNDQVRFELSIRALAPELKVIA 138 (388)
T ss_dssp -BTTTB--CCCCHHHH--HHHHHHHHHHHH--T-SEEE----TTSSHHHHHHHHHHHHSTTSEEE-
T ss_pred HhCCCccccccchHHH--HHHHHHHHHHHc--CCeEEeccCCcCCCchhHHHHHHHHhCcCCcEec
Confidence 33322211 11111 233344666665 4688886 56888888888888999999999876
No 118
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=73.25 E-value=23 Score=32.99 Aligned_cols=61 Identities=23% Similarity=0.244 Sum_probs=41.4
Q ss_pred HHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCC
Q 020805 60 AEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 124 (321)
Q Consensus 60 a~~~g~~~~g~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~ 124 (321)
++++..+.||. .|....-|-.|.-..-+|+.+|.+++.+ +.++.|.+..+.+||+.+....
T Consensus 158 alk~~~~~pG~-~V~I~G~GGlGh~avQ~Aka~ga~Via~---~~~~~K~e~a~~lGAd~~i~~~ 218 (339)
T COG1064 158 ALKKANVKPGK-WVAVVGAGGLGHMAVQYAKAMGAEVIAI---TRSEEKLELAKKLGADHVINSS 218 (339)
T ss_pred ehhhcCCCCCC-EEEEECCcHHHHHHHHHHHHcCCeEEEE---eCChHHHHHHHHhCCcEEEEcC
Confidence 45555577774 4666666656655556677788777777 4566778888888888777653
No 119
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=71.34 E-value=31 Score=30.09 Aligned_cols=71 Identities=23% Similarity=0.257 Sum_probs=45.3
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCC-ChhHHHHHHHHHHHh
Q 020805 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAK-GMKGAVQKAEEILAK 141 (321)
Q Consensus 71 ~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~-~~~~~~~~a~~~~~~ 141 (321)
..+|+..+|.-|.++|......|.+++++-.........+.+...|.++..+..+. +.++..+...+..++
T Consensus 10 ~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 81 (260)
T PRK12823 10 VVVVTGAAQGIGRGVALRAAAEGARVVLVDRSELVHEVAAELRAAGGEALALTADLETYAGAQAAMAAAVEA 81 (260)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEeCchHHHHHHHHHHhcCCeEEEEEEeCCCHHHHHHHHHHHHHH
Confidence 67888888999999999998999987776543222233345556687776554322 233444455555444
No 120
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=71.11 E-value=48 Score=30.68 Aligned_cols=56 Identities=25% Similarity=0.240 Sum_probs=38.5
Q ss_pred HcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 020805 62 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 120 (321)
Q Consensus 62 ~~g~~~~g~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~ 120 (321)
+.+.+++|...+|. .+|--|.+++..|+.+|.+.++.+. .++.|.+.++.+|++-+
T Consensus 170 ~~~~~~~g~~VlV~-G~g~vG~~a~~~ak~~G~~~Vi~~~--~~~~~~~~~~~~Ga~~~ 225 (358)
T TIGR03451 170 NTGGVKRGDSVAVI-GCGGVGDAAIAGAALAGASKIIAVD--IDDRKLEWAREFGATHT 225 (358)
T ss_pred hccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEc--CCHHHHHHHHHcCCceE
Confidence 34556677565555 5688888888889999986444442 24567778888888543
No 121
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=69.96 E-value=32 Score=31.49 Aligned_cols=55 Identities=22% Similarity=0.215 Sum_probs=40.3
Q ss_pred cCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHH-cCCEEE
Q 020805 63 KGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRA-FGAELV 120 (321)
Q Consensus 63 ~g~~~~g~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~-~Ga~v~ 120 (321)
.+.+++|...+|...+|.-|.+++-.|+.+|.+.++.. .+..|.+.++. +|++-+
T Consensus 146 ~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~---~~~~~~~~~~~~lGa~~v 201 (338)
T cd08295 146 VCKPKKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSA---GSDEKVDLLKNKLGFDDA 201 (338)
T ss_pred hcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEe---CCHHHHHHHHHhcCCcee
Confidence 35567776777776779999999999999999855443 23567777777 888543
No 122
>PRK08628 short chain dehydrogenase; Provisional
Probab=69.89 E-value=42 Score=29.17 Aligned_cols=56 Identities=14% Similarity=0.090 Sum_probs=40.3
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCC
Q 020805 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPA 125 (321)
Q Consensus 70 ~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~ 125 (321)
...+|+..+|--|.++|..-...|.+++++..........+.++..|.++..+..+
T Consensus 8 ~~ilItGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D 63 (258)
T PRK08628 8 KVVIVTGGASGIGAAISLRLAEEGAIPVIFGRSAPDDEFAEELRALQPRAEFVQVD 63 (258)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCCcEEEEcCChhhHHHHHHHHhcCCceEEEEcc
Confidence 36788888889999999998889999887765443333345566678777666543
No 123
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=69.45 E-value=23 Score=32.48 Aligned_cols=57 Identities=18% Similarity=0.113 Sum_probs=39.2
Q ss_pred HHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q 020805 61 EAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 121 (321)
Q Consensus 61 ~~~g~~~~g~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~ 121 (321)
.++..+++|...+|. ..|..|.+++..|+.+|.+.+++.+ ++.|.+.++.+|++.+.
T Consensus 158 ~~~~~~~~g~~VlV~-G~g~iG~~a~~~a~~~G~~vi~~~~---~~~~~~~a~~~Ga~~vi 214 (329)
T TIGR02822 158 LLRASLPPGGRLGLY-GFGGSAHLTAQVALAQGATVHVMTR---GAAARRLALALGAASAG 214 (329)
T ss_pred HHhcCCCCCCEEEEE-cCCHHHHHHHHHHHHCCCeEEEEeC---ChHHHHHHHHhCCceec
Confidence 344556777555554 4588888888889999987444322 35678889999997543
No 124
>PRK08703 short chain dehydrogenase; Provisional
Probab=69.24 E-value=57 Score=27.96 Aligned_cols=32 Identities=22% Similarity=0.221 Sum_probs=25.3
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEec
Q 020805 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMP 101 (321)
Q Consensus 70 ~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp 101 (321)
...+|+.++|.-|.++|......|.+++++.+
T Consensus 7 k~vlItG~sggiG~~la~~l~~~g~~V~~~~r 38 (239)
T PRK08703 7 KTILVTGASQGLGEQVAKAYAAAGATVILVAR 38 (239)
T ss_pred CEEEEECCCCcHHHHHHHHHHHcCCEEEEEeC
Confidence 36688888899999999988888887665543
No 125
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=69.22 E-value=45 Score=26.66 Aligned_cols=69 Identities=26% Similarity=0.244 Sum_probs=45.2
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC----HHHHHHHHHcCCEEEEeCCCCC-hhHHHHHHHHHH
Q 020805 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS----LERRIILRAFGAELVLTDPAKG-MKGAVQKAEEIL 139 (321)
Q Consensus 71 ~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~----~~~~~~~~~~Ga~v~~~~~~~~-~~~~~~~a~~~~ 139 (321)
..+|+..++.-|+++|..-...|-..++++..+.+ ....+.++..|.++..+..+.. .++..+..++..
T Consensus 2 ~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 75 (167)
T PF00106_consen 2 TVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPGAKITFIECDLSDPESIRALIEEVI 75 (167)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEESETTSHHHHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHhcCceEEEEeeecccccccccccccccccccccccccccccccccccccccccc
Confidence 45788889999999999977777777666666522 2234456778888887775432 233344444444
No 126
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=68.87 E-value=36 Score=33.04 Aligned_cols=53 Identities=8% Similarity=-0.132 Sum_probs=38.6
Q ss_pred hHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecC
Q 020805 50 DRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPA 102 (321)
Q Consensus 50 ~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~ 102 (321)
-+|+.+.+..+.+.-.....+.+|+...+||-|..+|.....+|.+++.+...
T Consensus 217 G~Gv~~~~~~~l~~~~~~l~Gk~VaVqG~GnVg~~aa~~L~e~GakVVavSD~ 269 (454)
T PTZ00079 217 GYGLVYFVLEVLKKLNDSLEGKTVVVSGSGNVAQYAVEKLLQLGAKVLTMSDS 269 (454)
T ss_pred HHHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcC
Confidence 46788888877654323333467888999999999998888888887755443
No 127
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=68.87 E-value=58 Score=30.35 Aligned_cols=56 Identities=20% Similarity=0.345 Sum_probs=38.2
Q ss_pred HcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 020805 62 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 120 (321)
Q Consensus 62 ~~g~~~~g~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~ 120 (321)
+...+++|...+|. .+|..|..++..|+.+|.+-++++ ..++.|++.++.+|++.+
T Consensus 185 ~~~~i~~g~~VlV~-G~G~vG~~a~~lak~~G~~~Vi~~--~~~~~r~~~a~~~Ga~~~ 240 (371)
T cd08281 185 NTAGVRPGQSVAVV-GLGGVGLSALLGAVAAGASQVVAV--DLNEDKLALARELGATAT 240 (371)
T ss_pred hccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCcEEEE--cCCHHHHHHHHHcCCceE
Confidence 34456677565554 568888888888999998534433 234577888888888543
No 128
>PRK07109 short chain dehydrogenase; Provisional
Probab=68.61 E-value=33 Score=31.68 Aligned_cols=71 Identities=15% Similarity=0.114 Sum_probs=45.4
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeCCCC-ChhHHHHHHHHHHHh
Q 020805 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTDPAK-GMKGAVQKAEEILAK 141 (321)
Q Consensus 71 ~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~-~~~~~~~~~~Ga~v~~~~~~~-~~~~~~~~a~~~~~~ 141 (321)
..+|+..+|--|.++|......|.+++++...... ....+.++..|.++..+..+. +.++..+.+.+..++
T Consensus 10 ~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~~Dv~d~~~v~~~~~~~~~~ 82 (334)
T PRK07109 10 VVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAGGEALAVVADVADAEAVQAAADRAEEE 82 (334)
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHH
Confidence 67888888999999999988999987776543211 123445667888887665432 223333444444443
No 129
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=68.48 E-value=40 Score=36.09 Aligned_cols=32 Identities=16% Similarity=0.259 Sum_probs=28.7
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEec
Q 020805 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMP 101 (321)
Q Consensus 70 ~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp 101 (321)
++.|+.-.+|..|.+.|+..++.|++++||=.
T Consensus 306 gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~ 337 (944)
T PRK12779 306 KPPIAVVGSGPSGLINAYLLAVEGFPVTVFEA 337 (944)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEee
Confidence 46788899999999999999999999999943
No 130
>PRK08226 short chain dehydrogenase; Provisional
Probab=68.43 E-value=39 Score=29.48 Aligned_cols=71 Identities=14% Similarity=0.005 Sum_probs=43.1
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCC-hhHHHHHHHHHHH
Q 020805 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKG-MKGAVQKAEEILA 140 (321)
Q Consensus 70 ~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~-~~~~~~~a~~~~~ 140 (321)
...+|+..+|.-|.++|......|.+++++-.........+.+...|.++..+..+.. .++..+...+..+
T Consensus 7 ~~~lItG~s~giG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~ 78 (263)
T PRK08226 7 KTALITGALQGIGEGIARVFARHGANLILLDISPEIEKLADELCGRGHRCTAVVADVRDPASVAAAIKRAKE 78 (263)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHH
Confidence 3678888899999999999888999877664433212223344455777665544322 2333344444433
No 131
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=68.32 E-value=46 Score=28.97 Aligned_cols=71 Identities=14% Similarity=0.117 Sum_probs=45.7
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCC-ChhHHHHHHHHHHHh
Q 020805 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAK-GMKGAVQKAEEILAK 141 (321)
Q Consensus 70 ~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~-~~~~~~~~a~~~~~~ 141 (321)
...+|+..++--|.++|......|.+++++-... .+...+.++..|.++..+..+- +.++..+...+..++
T Consensus 9 k~~lItGas~gIG~aia~~l~~~G~~vv~~~~~~-~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 80 (251)
T PRK12481 9 KVAIITGCNTGLGQGMAIGLAKAGADIVGVGVAE-APETQAQVEALGRKFHFITADLIQQKDIDSIVSQAVEV 80 (251)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEecCch-HHHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHHHHHH
Confidence 3678888889999999999999999987764432 2333455667788776554332 233444444444443
No 132
>PRK12743 oxidoreductase; Provisional
Probab=68.22 E-value=34 Score=29.87 Aligned_cols=71 Identities=13% Similarity=0.226 Sum_probs=46.4
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC--HHHHHHHHHcCCEEEEeCCCC-ChhHHHHHHHHHHHh
Q 020805 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS--LERRIILRAFGAELVLTDPAK-GMKGAVQKAEEILAK 141 (321)
Q Consensus 71 ~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~--~~~~~~~~~~Ga~v~~~~~~~-~~~~~~~~a~~~~~~ 141 (321)
..+|+..+|.-|.++|......|.+++++...+.+ ....+.++.+|.++..+..+. +.++..+...++.++
T Consensus 4 ~vlItGas~giG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 77 (256)
T PRK12743 4 VAIVTASDSGIGKACALLLAQQGFDIGITWHSDEEGAKETAEEVRSHGVRAEIRQLDLSDLPEGAQALDKLIQR 77 (256)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 56888888999999999999999988776544322 222456667888877665432 233444445555444
No 133
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=68.12 E-value=51 Score=30.51 Aligned_cols=63 Identities=17% Similarity=0.218 Sum_probs=50.8
Q ss_pred HHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCC
Q 020805 59 DAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 124 (321)
Q Consensus 59 ~a~~~g~~~~g~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~ 124 (321)
+|.+++.+++| .+++....|.-|...-..|+.+|-.=+|++. ..+.+++..+.+||+++.-..
T Consensus 160 HAcr~~~vk~G-s~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d--~~~~Rle~Ak~~Ga~~~~~~~ 222 (354)
T KOG0024|consen 160 HACRRAGVKKG-SKVLVLGAGPIGLLTGLVAKAMGASDVVITD--LVANRLELAKKFGATVTDPSS 222 (354)
T ss_pred hhhhhcCcccC-CeEEEECCcHHHHHHHHHHHHcCCCcEEEee--cCHHHHHHHHHhCCeEEeecc
Confidence 56667777887 5678899999999999999999998777754 457888899999999876654
No 134
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=68.06 E-value=46 Score=28.97 Aligned_cols=72 Identities=18% Similarity=0.183 Sum_probs=45.7
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCC-ChhHHHHHHHHHHHh
Q 020805 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAK-GMKGAVQKAEEILAK 141 (321)
Q Consensus 70 ~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~-~~~~~~~~a~~~~~~ 141 (321)
...+|+..+|.-|.++|..-...|.+++++......+...+.+...+.++..+..+- +.++..+...+..+.
T Consensus 16 k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~ 88 (258)
T PRK06935 16 KVAIVTGGNTGLGQGYAVALAKAGADIIITTHGTNWDETRRLIEKEGRKVTFVQVDLTKPESAEKVVKEALEE 88 (258)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 367888888999999999988899998887665222223344556677766555432 233344444555444
No 135
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=67.97 E-value=79 Score=28.98 Aligned_cols=56 Identities=27% Similarity=0.404 Sum_probs=40.2
Q ss_pred HcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 020805 62 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 120 (321)
Q Consensus 62 ~~g~~~~g~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~ 120 (321)
+...+.+|...+| ...|..|.+++..|+.+|...++++... +.|.+.++.+|++.+
T Consensus 168 ~~~~~~~g~~vlI-~g~g~vG~~~~~~a~~~G~~~v~~~~~~--~~~~~~~~~~g~~~v 223 (350)
T cd08256 168 DRANIKFDDVVVL-AGAGPLGLGMIGAARLKNPKKLIVLDLK--DERLALARKFGADVV 223 (350)
T ss_pred HhcCCCCCCEEEE-ECCCHHHHHHHHHHHHcCCcEEEEEcCC--HHHHHHHHHcCCcEE
Confidence 4555667755555 6668999999999999998766665443 567778888888544
No 136
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=67.93 E-value=36 Score=28.70 Aligned_cols=61 Identities=18% Similarity=0.249 Sum_probs=39.1
Q ss_pred EEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhC
Q 020805 73 LIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKT 142 (321)
Q Consensus 73 vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~ 142 (321)
+--.|||-+|.++|-++...|..++++.....-+. -.+.+++.+.. .++..+.+.+...+.
T Consensus 23 ItN~SSG~~G~~lA~~~~~~Ga~V~li~g~~~~~~------p~~~~~i~v~s---a~em~~~~~~~~~~~ 83 (185)
T PF04127_consen 23 ITNRSSGKMGAALAEEAARRGAEVTLIHGPSSLPP------PPGVKVIRVES---AEEMLEAVKELLPSA 83 (185)
T ss_dssp EEES--SHHHHHHHHHHHHTT-EEEEEE-TTS----------TTEEEEE-SS---HHHHHHHHHHHGGGG
T ss_pred ecCCCcCHHHHHHHHHHHHCCCEEEEEecCccccc------cccceEEEecc---hhhhhhhhccccCcc
Confidence 33458999999999999999999999987742111 24777877774 456666666665554
No 137
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=67.85 E-value=62 Score=28.12 Aligned_cols=70 Identities=14% Similarity=0.119 Sum_probs=45.5
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCC-ChhHHHHHHHHHHH
Q 020805 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAK-GMKGAVQKAEEILA 140 (321)
Q Consensus 70 ~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~-~~~~~~~~a~~~~~ 140 (321)
...+|+..+|.-|.++|......|.+++++-. .......+.++..+.++..+..+- +.++..+...+..+
T Consensus 11 k~~lItG~~~gIG~a~a~~l~~~G~~vv~~~~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 81 (253)
T PRK08993 11 KVAVVTGCDTGLGQGMALGLAEAGCDIVGINI-VEPTETIEQVTALGRRFLSLTADLRKIDGIPALLERAVA 81 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEecC-cchHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 36788899999999999999999998776532 233444566666777776665432 23334444444433
No 138
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=67.60 E-value=30 Score=31.58 Aligned_cols=54 Identities=19% Similarity=0.162 Sum_probs=39.7
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC--HHHHHHH----HHcCCEEEEeCC
Q 020805 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS--LERRIIL----RAFGAELVLTDP 124 (321)
Q Consensus 71 ~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~--~~~~~~~----~~~Ga~v~~~~~ 124 (321)
+-+.+.-+.|.+.++-.+|+++|+++++..|+... +.-++.+ +..|+++.++..
T Consensus 155 k~a~vGDgNNv~nSl~~~~a~~G~dv~ia~Pk~~~p~~~~~~~a~~~a~~~g~~i~~t~d 214 (310)
T COG0078 155 KLAYVGDGNNVANSLLLAAAKLGMDVRIATPKGYEPDPEVVEKAKENAKESGGKITLTED 214 (310)
T ss_pred EEEEEcCcchHHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHHHHHHHHhcCCeEEEecC
Confidence 43444455789999999999999999999999643 3333333 445899998874
No 139
>cd06324 PBP1_ABC_sugar_binding_like_13 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=67.53 E-value=93 Score=27.88 Aligned_cols=43 Identities=16% Similarity=0.184 Sum_probs=29.0
Q ss_pred hHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHHhcC----CCcEEEEEe
Q 020805 164 TGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKN----PNIKLYGIE 209 (321)
Q Consensus 164 ~~~Ei~~ql~~~~d~vv~p~G~Gg~~aGi~~~~k~~~----~~~~vigv~ 209 (321)
...+++++- +++|.|++ .+...+.|+..++++.+ .++.|+|.+
T Consensus 192 ~~~~~l~~~-~~~~ai~~--~~d~~A~g~~~al~~~g~~vp~di~vig~D 238 (305)
T cd06324 192 QAENLLKRY-PDVRLIWA--ANDQMAFGALRAAKEAGRKPGRDVLFGGVN 238 (305)
T ss_pred HHHHHHHHC-CCccEEEE--CCchHHHHHHHHHHHcCCCcCCCEEEEecC
Confidence 444555543 46898885 45667779999998876 246777766
No 140
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=67.45 E-value=78 Score=29.03 Aligned_cols=56 Identities=25% Similarity=0.334 Sum_probs=36.0
Q ss_pred HcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 020805 62 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 120 (321)
Q Consensus 62 ~~g~~~~g~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~ 120 (321)
+...+.+|...+|. .+|..|.+++..|+.+|++.++++ ..+..+.+.++.+|++.+
T Consensus 166 ~~~~~~~g~~vlI~-g~g~vG~~a~q~a~~~G~~~v~~~--~~~~~~~~~~~~~ga~~~ 221 (351)
T cd08233 166 RRSGFKPGDTALVL-GAGPIGLLTILALKAAGASKIIVS--EPSEARRELAEELGATIV 221 (351)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEEE--CCCHHHHHHHHHhCCCEE
Confidence 34445666555555 468888888888999988544443 234556667777777543
No 141
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=67.26 E-value=74 Score=28.99 Aligned_cols=57 Identities=23% Similarity=0.371 Sum_probs=35.4
Q ss_pred cCCCCCC--CeEEEeeCCChHHHHHHHHHHHcCC-eEEEEecCCCCHHHHHHHHH-cCCEEEEe
Q 020805 63 KGLITPG--ESVLIEPTSGNTGIGLAFMAAAKQY-RLIITMPASMSLERRIILRA-FGAELVLT 122 (321)
Q Consensus 63 ~g~~~~g--~~~vv~~SsGN~g~AlA~aa~~~G~-~~~ivvp~~~~~~~~~~~~~-~Ga~v~~~ 122 (321)
.+.+++| ...+|...+|..|.++.-.|+.+|. +++++.+ ++.+.+.++. +|++-++.
T Consensus 147 ~~~~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~---s~~~~~~~~~~lGa~~vi~ 207 (345)
T cd08293 147 KGHITPGANQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICG---SDEKCQLLKSELGFDAAIN 207 (345)
T ss_pred hccCCCCCCCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcC---CHHHHHHHHHhcCCcEEEE
Confidence 3445544 4555555568888888888888888 4554432 3456666655 88765433
No 142
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=66.98 E-value=87 Score=28.95 Aligned_cols=56 Identities=18% Similarity=0.213 Sum_probs=39.4
Q ss_pred cCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHH-HcCCEEEE
Q 020805 63 KGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILR-AFGAELVL 121 (321)
Q Consensus 63 ~g~~~~g~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~-~~Ga~v~~ 121 (321)
.+.+.+|...+|...+|.-|.++...|+.+|.+.+++. .+..|.+.++ .+|++.++
T Consensus 153 ~~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~---~~~~k~~~~~~~lGa~~vi 209 (348)
T PLN03154 153 VCSPKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSA---GSSQKVDLLKNKLGFDEAF 209 (348)
T ss_pred hcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEc---CCHHHHHHHHHhcCCCEEE
Confidence 35567776666666669999998889999998754432 3456777776 68886544
No 143
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=66.91 E-value=40 Score=30.97 Aligned_cols=53 Identities=17% Similarity=0.196 Sum_probs=37.2
Q ss_pred CCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q 020805 66 ITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 121 (321)
Q Consensus 66 ~~~g~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~ 121 (321)
..+|...+| ..+|..|.+....|+.+|.+-++++. .++.|++.++.+|++.++
T Consensus 167 ~~~g~~VlV-~G~G~vG~~aiqlak~~G~~~Vi~~~--~~~~~~~~a~~lGa~~vi 219 (343)
T PRK09880 167 DLQGKRVFV-SGVGPIGCLIVAAVKTLGAAEIVCAD--VSPRSLSLAREMGADKLV 219 (343)
T ss_pred CCCCCEEEE-ECCCHHHHHHHHHHHHcCCcEEEEEe--CCHHHHHHHHHcCCcEEe
Confidence 345645455 45689999988899999986554443 245778888889987544
No 144
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=66.78 E-value=51 Score=28.60 Aligned_cols=56 Identities=9% Similarity=0.014 Sum_probs=40.0
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeCCC
Q 020805 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTDPA 125 (321)
Q Consensus 70 ~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~-~~~~~~~~~~Ga~v~~~~~~ 125 (321)
...+|+..+|.-|.++|......|.+++++...... ..-.+.++..|.++..+..+
T Consensus 8 ~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D 64 (262)
T PRK13394 8 KTAVVTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADEINKAGGKAIGVAMD 64 (262)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhcCceEEEEECC
Confidence 367888899999999999999999987766544321 22344566778888766543
No 145
>PRK08589 short chain dehydrogenase; Validated
Probab=66.28 E-value=41 Score=29.70 Aligned_cols=72 Identities=15% Similarity=0.038 Sum_probs=44.2
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCC-ChhHHHHHHHHHHHh
Q 020805 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAK-GMKGAVQKAEEILAK 141 (321)
Q Consensus 70 ~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~-~~~~~~~~a~~~~~~ 141 (321)
...+|+..+|--|.++|......|.+++++-.........+.++..+.++..+..+- +.++......+..++
T Consensus 7 k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 79 (272)
T PRK08589 7 KVAVITGASTGIGQASAIALAQEGAYVLAVDIAEAVSETVDKIKSNGGKAKAYHVDISDEQQVKDFASEIKEQ 79 (272)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHHH
Confidence 367888888888999998888889988877554211223445566676666554332 223344444444443
No 146
>PRK06348 aspartate aminotransferase; Provisional
Probab=66.08 E-value=1.2e+02 Score=28.46 Aligned_cols=79 Identities=8% Similarity=0.034 Sum_probs=43.7
Q ss_pred CCCCCCchhhHHHHHHHHHHHHcCC-CCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEE
Q 020805 41 MMEPCSSVKDRIGYSMISDAEAKGL-ITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAEL 119 (321)
Q Consensus 41 ~~~ptGS~K~R~a~~~l~~a~~~g~-~~~g~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v 119 (321)
+..+.|.--.|-+...... .+.|. +.+ ..|+..+++.++..++..+- .+-.-.|+++.-.-..-...++.+|+++
T Consensus 62 Y~~~~G~~~lr~~ia~~~~-~~~~~~~~~--~~i~it~G~~~al~~~~~~~-~~~gd~vlv~~p~y~~~~~~~~~~g~~~ 137 (384)
T PRK06348 62 YTDSGGDVELIEEIIKYYS-KNYDLSFKR--NEIMATVGACHGMYLALQSI-LDPGDEVIIHEPYFTPYKDQIEMVGGKP 137 (384)
T ss_pred CCCCCCcHHHHHHHHHHHH-HHhCCCCCh--hhEEEcCChHHHHHHHHHHh-cCCCCEEEEeCCCCcchHHHHHHcCCEE
Confidence 3345665555544332221 11232 233 34777777778776665543 2222356666654444566778899999
Q ss_pred EEeC
Q 020805 120 VLTD 123 (321)
Q Consensus 120 ~~~~ 123 (321)
+.++
T Consensus 138 ~~~~ 141 (384)
T PRK06348 138 IILE 141 (384)
T ss_pred EEec
Confidence 8886
No 147
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=65.78 E-value=59 Score=27.98 Aligned_cols=70 Identities=11% Similarity=0.140 Sum_probs=44.6
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCC-hhHHHHHHHHHHH
Q 020805 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKG-MKGAVQKAEEILA 140 (321)
Q Consensus 70 ~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~-~~~~~~~a~~~~~ 140 (321)
...+|+..+|.-|.++|......|..++++.... .....+.++.++.++..+..+.. .++..+..++..+
T Consensus 6 k~vlItGas~gIG~~ia~~l~~~G~~vi~~~r~~-~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 76 (248)
T TIGR01832 6 KVALVTGANTGLGQGIAVGLAEAGADIVGAGRSE-PSETQQQVEALGRRFLSLTADLSDIEAIKALVDSAVE 76 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEcCch-HHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHH
Confidence 3678888888899999999989999877765432 23344556677877766654322 2333334444433
No 148
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=65.23 E-value=19 Score=29.43 Aligned_cols=45 Identities=16% Similarity=0.180 Sum_probs=36.6
Q ss_pred ChHHHHHHHHHHHcCCeEEEEecCC--CCH--HHH----HHHHHcCCEEEEeC
Q 020805 79 GNTGIGLAFMAAAKQYRLIITMPAS--MSL--ERR----IILRAFGAELVLTD 123 (321)
Q Consensus 79 GN~g~AlA~aa~~~G~~~~ivvp~~--~~~--~~~----~~~~~~Ga~v~~~~ 123 (321)
+|.+.|++..+.++|+.++++.|+. .+. ..+ +..+..|.++..+.
T Consensus 13 ~rv~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~ 65 (158)
T PF00185_consen 13 NRVAHSLIELLAKFGMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITITD 65 (158)
T ss_dssp SHHHHHHHHHHHHTTSEEEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEEES
T ss_pred ChHHHHHHHHHHHcCCEEEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEEEe
Confidence 7999999999999999999999998 455 233 34455699999885
No 149
>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase. This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=65.20 E-value=75 Score=29.83 Aligned_cols=82 Identities=11% Similarity=-0.015 Sum_probs=45.2
Q ss_pred CCCCCCchhhHHHHHHHHHHHHcCC---CCCCCeEEEeeCCChHHHHHHHHHH-HcCCeEEEEecCCCCHHHHHHHHHcC
Q 020805 41 MMEPCSSVKDRIGYSMISDAEAKGL---ITPGESVLIEPTSGNTGIGLAFMAA-AKQYRLIITMPASMSLERRIILRAFG 116 (321)
Q Consensus 41 ~~~ptGS~K~R~a~~~l~~a~~~g~---~~~g~~~vv~~SsGN~g~AlA~aa~-~~G~~~~ivvp~~~~~~~~~~~~~~G 116 (321)
+..+.|.-..|-+..-..... .|. +.+. ..|+..+++..+..++..+- .-|=...|++|.-.-..-....+.+|
T Consensus 60 Y~~~~G~~~lr~aia~~~~~~-~~~~~~~~~~-~~i~it~Ga~~al~~~~~~l~~~gd~~~vlv~~P~y~~~~~~~~~~g 137 (393)
T TIGR03538 60 YPTTKGLPELRQAIARWLERR-FDLPTGVDPE-RHVLPVNGTREALFAFAQAVINPGQAPLVVMPNPFYQIYEGAALLAG 137 (393)
T ss_pred CCCCCCCHHHHHHHHHHHHHh-hCCcccCCCC-ceEEECCCcHHHHHHHHHHHcCCCCcceEEecCCCCcchHHHHHhcC
Confidence 334567666775543322221 121 2332 24666677777766655432 23433457777644333345678899
Q ss_pred CEEEEeCC
Q 020805 117 AELVLTDP 124 (321)
Q Consensus 117 a~v~~~~~ 124 (321)
++++.++-
T Consensus 138 ~~~~~v~~ 145 (393)
T TIGR03538 138 AEPYFLNC 145 (393)
T ss_pred CeEEEeec
Confidence 99998864
No 150
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=65.19 E-value=14 Score=36.98 Aligned_cols=52 Identities=13% Similarity=0.093 Sum_probs=40.3
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCC------------------CCHHHHHHHHHcCCEEEEe
Q 020805 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPAS------------------MSLERRIILRAFGAELVLT 122 (321)
Q Consensus 71 ~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~------------------~~~~~~~~~~~~Ga~v~~~ 122 (321)
+.|+...+|..|++.|..+++.|.+++++=... ....+++.++.+|++++.-
T Consensus 138 ~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~ 207 (564)
T PRK12771 138 KRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRLG 207 (564)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEeC
Confidence 568889999999999999999999977763221 2245677888999987653
No 151
>PRK06139 short chain dehydrogenase; Provisional
Probab=64.88 E-value=38 Score=31.28 Aligned_cols=71 Identities=20% Similarity=0.163 Sum_probs=44.1
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeCCCC-ChhHHHHHHHHHHH
Q 020805 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTDPAK-GMKGAVQKAEEILA 140 (321)
Q Consensus 70 ~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~-~~~~~~~~~~Ga~v~~~~~~~-~~~~~~~~a~~~~~ 140 (321)
...||+..+|--|.++|......|.+++++...... ....+.++..|.++..+..+- +.++..+.+.+..+
T Consensus 8 k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~~~~ 80 (330)
T PRK06139 8 AVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRALGAEVLVVPTDVTDADQVKALATQAAS 80 (330)
T ss_pred CEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHH
Confidence 366888888889999999999999987766543221 122345667898876554332 22333344444433
No 152
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=64.81 E-value=30 Score=33.22 Aligned_cols=53 Identities=21% Similarity=0.265 Sum_probs=40.1
Q ss_pred CCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 020805 64 GLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 120 (321)
Q Consensus 64 g~~~~g~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~ 120 (321)
+..-+| ++|+....|.-|+.+|..++.+|.+++++ +..+.+....+.+|+++.
T Consensus 197 ~~~l~G-ktVvViG~G~IG~~va~~ak~~Ga~ViV~---d~d~~R~~~A~~~G~~~~ 249 (413)
T cd00401 197 DVMIAG-KVAVVAGYGDVGKGCAQSLRGQGARVIVT---EVDPICALQAAMEGYEVM 249 (413)
T ss_pred CCCCCC-CEEEEECCCHHHHHHHHHHHHCCCEEEEE---ECChhhHHHHHhcCCEEc
Confidence 333344 66888999999999999999999975553 334567778888998654
No 153
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=64.77 E-value=48 Score=30.26 Aligned_cols=57 Identities=26% Similarity=0.353 Sum_probs=37.4
Q ss_pred HHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 020805 61 EAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 120 (321)
Q Consensus 61 ~~~g~~~~g~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~ 120 (321)
.++..+.+|...+|. .+|.-|.+++..|+.+|.+-++++ +.++.|.+.++.+|++.+
T Consensus 156 l~~~~~~~g~~vlV~-G~G~vG~~~~~~ak~~G~~~vi~~--~~~~~~~~~~~~~ga~~~ 212 (339)
T cd08239 156 LRRVGVSGRDTVLVV-GAGPVGLGALMLARALGAEDVIGV--DPSPERLELAKALGADFV 212 (339)
T ss_pred HHhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEEE--CCCHHHHHHHHHhCCCEE
Confidence 334445666565555 568888888888999998833333 234567777788887543
No 154
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=64.48 E-value=60 Score=29.22 Aligned_cols=48 Identities=19% Similarity=0.251 Sum_probs=32.8
Q ss_pred CCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEE
Q 020805 69 GESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAEL 119 (321)
Q Consensus 69 g~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v 119 (321)
+...+|...+|..|.+++..|+.+|.+.++.... +.+.+.++.+|++-
T Consensus 147 ~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~~ 194 (326)
T cd08289 147 QGPVLVTGATGGVGSLAVSILAKLGYEVVASTGK---ADAADYLKKLGAKE 194 (326)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCCCeEEEEecC---HHHHHHHHHcCCCE
Confidence 3354555556899999999999999875544332 45667777788743
No 155
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=64.00 E-value=45 Score=30.63 Aligned_cols=56 Identities=18% Similarity=0.211 Sum_probs=38.4
Q ss_pred HcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 020805 62 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 120 (321)
Q Consensus 62 ~~g~~~~g~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~ 120 (321)
+...+.+|...+|. .+|..|.+++..|+.+|.+.++.+. .++.|.+.++.+|++-+
T Consensus 154 ~~~~~~~g~~vlV~-G~g~vG~~~~~~a~~~G~~~v~~~~--~~~~~~~~~~~~Ga~~~ 209 (347)
T PRK10309 154 HLAQGCEGKNVIII-GAGTIGLLAIQCAVALGAKSVTAID--INSEKLALAKSLGAMQT 209 (347)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEC--CCHHHHHHHHHcCCceE
Confidence 44445666555555 5788999999999999987555443 24567777788887543
No 156
>KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]
Probab=63.72 E-value=1.2e+02 Score=28.06 Aligned_cols=84 Identities=14% Similarity=0.226 Sum_probs=54.6
Q ss_pred eEEEeeCCChHHHHHHHHHHHc--CCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChh-HHHHHHHHHHHhCCCeEE
Q 020805 71 SVLIEPTSGNTGIGLAFMAAAK--QYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMK-GAVQKAEEILAKTPNAYM 147 (321)
Q Consensus 71 ~~vv~~SsGN~g~AlA~aa~~~--G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~-~~~~~a~~~~~~~~~~~~ 147 (321)
.+++.+++|..|.-.|+ ++.+ |=++.++.-..-.+.-.+..+.||++|..++.+.+.. .-+.....+++..++.++
T Consensus 69 ~tf~isgsGh~g~E~al-~N~lePgd~vLv~~~G~wg~ra~D~~~r~ga~V~~v~~~~G~~~~le~i~~~lsqh~p~~vf 147 (385)
T KOG2862|consen 69 QTFVISGSGHSGWEAAL-VNLLEPGDNVLVVSTGTWGQRAADCARRYGAEVDVVEADIGQAVPLEEITEKLSQHKPKAVF 147 (385)
T ss_pred ceEEEecCCcchHHHHH-HhhcCCCCeEEEEEechHHHHHHHHHHhhCceeeEEecCcccCccHHHHHHHHHhcCCceEE
Confidence 56888888877765444 4443 4445555444456677888999999999997543311 233445566666678888
Q ss_pred cCCCCCCc
Q 020805 148 LQQFENPA 155 (321)
Q Consensus 148 ~~~~~~~~ 155 (321)
+.+.++..
T Consensus 148 v~hgdsST 155 (385)
T KOG2862|consen 148 VTHGDSST 155 (385)
T ss_pred EEecCccc
Confidence 88776543
No 157
>TIGR01751 crot-CoA-red crotonyl-CoA reductase. The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.
Probab=63.69 E-value=52 Score=31.03 Aligned_cols=56 Identities=29% Similarity=0.341 Sum_probs=41.1
Q ss_pred CCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEe
Q 020805 64 GLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLT 122 (321)
Q Consensus 64 g~~~~g~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~ 122 (321)
..+.+|...+|...+|..|.+++..|+.+|.+.+++. .+..+.+.++.+|+..++-
T Consensus 185 ~~~~~g~~vlV~Ga~g~vG~~ai~~ak~~G~~vi~~~---~~~~~~~~~~~~g~~~~v~ 240 (398)
T TIGR01751 185 ATVKPGDNVLIWGAAGGLGSYATQLARAGGGNPVAVV---SSPEKAEYCRELGAEAVID 240 (398)
T ss_pred cCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCeEEEEc---CCHHHHHHHHHcCCCEEec
Confidence 4456665656666669999999999999999865553 3456778888899876654
No 158
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=63.65 E-value=72 Score=28.60 Aligned_cols=54 Identities=24% Similarity=0.284 Sum_probs=35.3
Q ss_pred HcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE
Q 020805 62 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAE 118 (321)
Q Consensus 62 ~~g~~~~g~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~ 118 (321)
+...+.+|...+|...+|..|.+++..|+.+|.+.+++.... .+.+.++.+|++
T Consensus 133 ~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~~---~~~~~~~~~g~~ 186 (324)
T cd08292 133 DFLGVKPGQWLIQNAAGGAVGKLVAMLAAARGINVINLVRRD---AGVAELRALGIG 186 (324)
T ss_pred HhhCCCCCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecCH---HHHHHHHhcCCC
Confidence 334566665655555668889999899999998766664332 344555556663
No 159
>PRK06114 short chain dehydrogenase; Provisional
Probab=63.50 E-value=84 Score=27.27 Aligned_cols=55 Identities=11% Similarity=0.061 Sum_probs=38.3
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC--HHHHHHHHHcCCEEEEeCC
Q 020805 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS--LERRIILRAFGAELVLTDP 124 (321)
Q Consensus 70 ~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~--~~~~~~~~~~Ga~v~~~~~ 124 (321)
...+|+..+|--|.++|..-...|.++++....... ....+.++..|.++..+..
T Consensus 9 k~~lVtG~s~gIG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~ 65 (254)
T PRK06114 9 QVAFVTGAGSGIGQRIAIGLAQAGADVALFDLRTDDGLAETAEHIEAAGRRAIQIAA 65 (254)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCceEEEEc
Confidence 367888888889999999988899988777554321 2234456666777765554
No 160
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=63.34 E-value=85 Score=28.56 Aligned_cols=51 Identities=22% Similarity=0.261 Sum_probs=35.0
Q ss_pred CCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEE
Q 020805 65 LITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAEL 119 (321)
Q Consensus 65 ~~~~g~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v 119 (321)
.++++...+|.. +|..|.+++..|+.+|.+.+++.+ .+.+.+.++.+|++-
T Consensus 160 ~~~~~~~vlV~g-~g~iG~~~~~~a~~~G~~vi~~~~---~~~~~~~~~~~g~~~ 210 (333)
T cd08296 160 GAKPGDLVAVQG-IGGLGHLAVQYAAKMGFRTVAISR---GSDKADLARKLGAHH 210 (333)
T ss_pred CCCCCCEEEEEC-CcHHHHHHHHHHHHCCCeEEEEeC---ChHHHHHHHHcCCcE
Confidence 455565555544 899999999999999988554433 345677777788743
No 161
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=63.16 E-value=41 Score=29.16 Aligned_cols=53 Identities=15% Similarity=-0.027 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCC
Q 020805 51 RIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPAS 103 (321)
Q Consensus 51 R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~ 103 (321)
||..+.+..+.++-.....+.+|+....||-|+.+|......|.+.+.+...+
T Consensus 4 ~Gv~~~~~~~~~~~~~~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~ 56 (217)
T cd05211 4 YGVVVAMKAAMKHLGDSLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPD 56 (217)
T ss_pred hHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCC
Confidence 56777777765442233344678889999999999999999988888776643
No 162
>COG1587 HemD Uroporphyrinogen-III synthase [Coenzyme metabolism]
Probab=62.97 E-value=1.1e+02 Score=26.95 Aligned_cols=121 Identities=15% Similarity=0.076 Sum_probs=70.1
Q ss_pred HHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHc---CCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEcCCCCCCcchh
Q 020805 82 GIGLAFMAAAKQYRLIITMPASMSLERRIILRAF---GAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPK 158 (321)
Q Consensus 82 g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~---Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 158 (321)
|.+.|-+.+.+|+++.++-++..+...+..+..+ |.+|....++.+ +....+.+.+..-....+..|.+-....
T Consensus 86 G~~Ta~~l~~~G~~~~~~p~~~~~~~l~~~l~~~~~~~~~vl~~~~~~~---r~~l~~~L~~~G~~v~~~~~Y~~~~~~~ 162 (248)
T COG1587 86 GEKTAEALRKLGIKVDFIPEDGDSEGLLEELPELLKGGKRVLILRGNGG---REVLEEKLEERGAEVREVEVYRTEPPPL 162 (248)
T ss_pred cHHHHHHHHHhCCCCCcCCCccchHHHHHHhhhhccCCCeEEEEcCCCc---hHHHHHHHHhCCCEEEEEeeeeecCCCc
Confidence 4788999999999999887777788888888877 678888876532 2233344444322344455555433211
Q ss_pred hhhhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHHhcCC----CcEEEEEecC
Q 020805 159 IHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNP----NIKLYGIEPT 211 (321)
Q Consensus 159 ~g~~~~~~Ei~~ql~~~~d~vv~p~G~Gg~~aGi~~~~k~~~~----~~~vigv~~~ 211 (321)
. ..+ -.+++ + ...+|.|+...+ .++..+...++..++ +.+++.+-|.
T Consensus 163 ~-~~~-~~~~~-~-~~~~d~v~ftS~--~~v~~~~~~~~~~~~~~~~~~~v~~IG~~ 213 (248)
T COG1587 163 D-EAT-LIELL-K-LGEVDAVVFTSS--SAVRALLALAPESGIEFLERKRVASIGPR 213 (248)
T ss_pred c-HHH-HHHHH-H-hCCCCEEEEeCH--HHHHHHHHHccccchhHhhCceEEEecHH
Confidence 1 111 11122 2 256898887654 445555555554443 2455555433
No 163
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=62.73 E-value=42 Score=29.90 Aligned_cols=52 Identities=10% Similarity=-0.145 Sum_probs=39.7
Q ss_pred hHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEec
Q 020805 50 DRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMP 101 (321)
Q Consensus 50 ~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp 101 (321)
-||..+.+..+.+.-.....+.+|+....||-|..+|.....+|.+++.+..
T Consensus 18 g~Gv~~~~~~~~~~~~~~l~g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD 69 (254)
T cd05313 18 GYGLVYFVEEMLKDRNETLKGKRVAISGSGNVAQYAAEKLLELGAKVVTLSD 69 (254)
T ss_pred HHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEC
Confidence 4677888877765433344457899899999999999999998888876655
No 164
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=62.59 E-value=59 Score=28.68 Aligned_cols=55 Identities=16% Similarity=0.078 Sum_probs=38.2
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCC-CHHHHHHHHHcCCEEEEeCCC
Q 020805 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM-SLERRIILRAFGAELVLTDPA 125 (321)
Q Consensus 71 ~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~-~~~~~~~~~~~Ga~v~~~~~~ 125 (321)
..+|+..+|.-|.++|......|.+++++-.... .+...+.++..|.++..+..+
T Consensus 12 ~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D 67 (278)
T PRK08277 12 VAVITGGGGVLGGAMAKELARAGAKVAILDRNQEKAEAVVAEIKAAGGEALAVKAD 67 (278)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECC
Confidence 6788888899999999998899998777654321 122234455667777666543
No 165
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=62.54 E-value=60 Score=26.77 Aligned_cols=30 Identities=30% Similarity=0.381 Sum_probs=19.0
Q ss_pred eEEEeeCCChHH---HHHHHHHHHcCCeEEEEe
Q 020805 71 SVLIEPTSGNTG---IGLAFMAAAKQYRLIITM 100 (321)
Q Consensus 71 ~~vv~~SsGN~g---~AlA~aa~~~G~~~~ivv 100 (321)
..+|-+++||.| .++|..-+..|+++++++
T Consensus 27 ~v~il~G~GnNGgDgl~~AR~L~~~G~~V~v~~ 59 (169)
T PF03853_consen 27 RVLILCGPGNNGGDGLVAARHLANRGYNVTVYL 59 (169)
T ss_dssp EEEEEE-SSHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred eEEEEECCCCChHHHHHHHHHHHHCCCeEEEEE
Confidence 667777777765 344444556788888844
No 166
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=62.47 E-value=49 Score=31.04 Aligned_cols=54 Identities=33% Similarity=0.359 Sum_probs=40.2
Q ss_pred CCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q 020805 65 LITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 121 (321)
Q Consensus 65 ~~~~g~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~ 121 (321)
.+++|...+|...+|..|.+++..|+.+|.+.+++. .+..+.+.++.+|++.+.
T Consensus 190 ~~~~g~~vlV~ga~g~iG~a~~~lak~~G~~vv~~~---~s~~~~~~~~~~G~~~~i 243 (393)
T cd08246 190 TVKPGDNVLIWGASGGLGSMAIQLARAAGANPVAVV---SSEEKAEYCRALGAEGVI 243 (393)
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHcCCeEEEEe---CCHHHHHHHHHcCCCEEE
Confidence 455665555555569999999999999999976553 356778888889986554
No 167
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=62.24 E-value=73 Score=27.11 Aligned_cols=55 Identities=18% Similarity=0.165 Sum_probs=38.6
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC--HHHHHHHHHcCCEEEEeCCC
Q 020805 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS--LERRIILRAFGAELVLTDPA 125 (321)
Q Consensus 71 ~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~--~~~~~~~~~~Ga~v~~~~~~ 125 (321)
..+|+.++|..|.+++......|.+.+++.....+ ....+.++..+.++..+..+
T Consensus 7 ~vlItG~sg~iG~~l~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 63 (248)
T PRK05557 7 VALVTGASRGIGRAIAERLAAQGANVVINYASSEAGAEALVAEIGALGGKALAVQGD 63 (248)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHhcCCceEEEEcC
Confidence 66888888999999999988889987666654332 12233455667888777543
No 168
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=62.22 E-value=53 Score=29.60 Aligned_cols=55 Identities=25% Similarity=0.364 Sum_probs=38.0
Q ss_pred HcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 020805 62 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 120 (321)
Q Consensus 62 ~~g~~~~g~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~ 120 (321)
+.+.+.+|...+|. .+|-.|.+++..|+.+|.+.+++ ..++.+.+.++.+|+...
T Consensus 149 ~~~~~~~g~~vlV~-g~g~vg~~~~q~a~~~G~~vi~~---~~~~~~~~~~~~~g~~~~ 203 (319)
T cd08242 149 EQVPITPGDKVAVL-GDGKLGLLIAQVLALTGPDVVLV---GRHSEKLALARRLGVETV 203 (319)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCeEEEE---cCCHHHHHHHHHcCCcEE
Confidence 45556667565555 47888888888899999984443 223567777777887643
No 169
>PRK12937 short chain dehydrogenase; Provisional
Probab=62.12 E-value=78 Score=27.05 Aligned_cols=71 Identities=13% Similarity=0.131 Sum_probs=45.6
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC--HHHHHHHHHcCCEEEEeCCCCC-hhHHHHHHHHHHH
Q 020805 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS--LERRIILRAFGAELVLTDPAKG-MKGAVQKAEEILA 140 (321)
Q Consensus 70 ~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~--~~~~~~~~~~Ga~v~~~~~~~~-~~~~~~~a~~~~~ 140 (321)
...+|+..+|.-|.++|..-...|.+++++.....+ ....+.++.++.++..+..+.. .++..+...+..+
T Consensus 6 ~~vlItG~~~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 79 (245)
T PRK12937 6 KVAIVTGASRGIGAAIARRLAADGFAVAVNYAGSAAAADELVAEIEAAGGRAIAVQADVADAAAVTRLFDAAET 79 (245)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 367888888999999999999999988776544322 2234456677888877664322 2333333444433
No 170
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=61.95 E-value=37 Score=31.42 Aligned_cols=61 Identities=21% Similarity=0.309 Sum_probs=42.9
Q ss_pred HHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCC
Q 020805 60 AEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 124 (321)
Q Consensus 60 a~~~g~~~~g~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~ 124 (321)
+.+.| +.||...-|..-+| .|.-.--+|+.+|++++++-.. +..|.+.++.+||+......
T Consensus 174 Lk~~g-~~pG~~vgI~GlGG-LGh~aVq~AKAMG~rV~vis~~--~~kkeea~~~LGAd~fv~~~ 234 (360)
T KOG0023|consen 174 LKRSG-LGPGKWVGIVGLGG-LGHMAVQYAKAMGMRVTVISTS--SKKKEEAIKSLGADVFVDST 234 (360)
T ss_pred hHHcC-CCCCcEEEEecCcc-cchHHHHHHHHhCcEEEEEeCC--chhHHHHHHhcCcceeEEec
Confidence 34455 45886655555555 7655556789999999998433 34677899999999987764
No 171
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=61.85 E-value=83 Score=29.83 Aligned_cols=131 Identities=15% Similarity=0.121 Sum_probs=76.0
Q ss_pred CCchhhHHHHHHHHHH----HHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 020805 45 CSSVKDRIGYSMISDA----EAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 120 (321)
Q Consensus 45 tGS~K~R~a~~~l~~a----~~~g~~~~g~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~ 120 (321)
.|.+..-.|.+.+... ++.|..-. +++|-.-.-||-|..+|..++.+|++++++=|..... +....
T Consensus 88 pg~na~aVAE~~~~~lL~l~r~~g~~L~-gktvGIIG~G~IG~~vA~~l~a~G~~V~~~dp~~~~~---------~~~~~ 157 (378)
T PRK15438 88 PGCNAIAVVEYVFSSLLMLAERDGFSLH-DRTVGIVGVGNVGRRLQARLEALGIKTLLCDPPRADR---------GDEGD 157 (378)
T ss_pred CCcCchHHHHHHHHHHHHHhccCCCCcC-CCEEEEECcCHHHHHHHHHHHHCCCEEEEECCccccc---------ccccc
Confidence 4556666666655433 23343222 3567777889999999999999999998885432110 11100
Q ss_pred EeCCCCChhHHHHHHHHHHHhCCCeEEcCCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhH--HHHHHHHHh
Q 020805 121 LTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTI--TGAGKFLKE 198 (321)
Q Consensus 121 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~Ei~~ql~~~~d~vv~p~G~Gg~~--aGi~~~~k~ 198 (321)
+.+ ..++.++- +...++---++.....-+.-+..+.++++ +++.+++-+|-|+.+ ..+..+++.
T Consensus 158 -------~~~----L~ell~~s-DiI~lh~PLt~~g~~~T~~li~~~~l~~m--k~gailIN~aRG~vVDe~AL~~aL~~ 223 (378)
T PRK15438 158 -------FRS----LDELVQEA-DILTFHTPLFKDGPYKTLHLADEKLIRSL--KPGAILINACRGAVVDNTALLTCLNE 223 (378)
T ss_pred -------cCC----HHHHHhhC-CEEEEeCCCCCCcccccccccCHHHHhcC--CCCcEEEECCCchhcCHHHHHHHHHh
Confidence 111 22333443 45543222122110112344666888888 478999999999987 566667764
Q ss_pred c
Q 020805 199 K 199 (321)
Q Consensus 199 ~ 199 (321)
.
T Consensus 224 g 224 (378)
T PRK15438 224 G 224 (378)
T ss_pred C
Confidence 3
No 172
>PLN02740 Alcohol dehydrogenase-like
Probab=61.80 E-value=50 Score=30.96 Aligned_cols=56 Identities=23% Similarity=0.201 Sum_probs=37.1
Q ss_pred HcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 020805 62 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 120 (321)
Q Consensus 62 ~~g~~~~g~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~ 120 (321)
+...+++|...+| ...|.-|.+++..|+.+|.+-++.+ +.++.|++.++.+|++.+
T Consensus 192 ~~~~~~~g~~VlV-~G~G~vG~~a~q~ak~~G~~~Vi~~--~~~~~r~~~a~~~Ga~~~ 247 (381)
T PLN02740 192 NTANVQAGSSVAI-FGLGAVGLAVAEGARARGASKIIGV--DINPEKFEKGKEMGITDF 247 (381)
T ss_pred hccCCCCCCEEEE-ECCCHHHHHHHHHHHHCCCCcEEEE--cCChHHHHHHHHcCCcEE
Confidence 3445667755444 4568888888888999998533333 224567778888888643
No 173
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=61.71 E-value=64 Score=30.07 Aligned_cols=57 Identities=16% Similarity=0.239 Sum_probs=38.8
Q ss_pred HcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q 020805 62 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 121 (321)
Q Consensus 62 ~~g~~~~g~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~ 121 (321)
+.+.+++|...+|. .+|.-|.+++..|+.+|..-++.+ ..++.|++.++.+|++.++
T Consensus 179 ~~~~~~~g~~VlV~-G~G~iG~~a~q~Ak~~G~~~Vi~~--~~~~~~~~~a~~~Ga~~~i 235 (368)
T TIGR02818 179 NTAKVEEGDTVAVF-GLGGIGLSVIQGARMAKASRIIAI--DINPAKFELAKKLGATDCV 235 (368)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEE--cCCHHHHHHHHHhCCCeEE
Confidence 34556677565555 568899998889999998433333 3345678888888885433
No 174
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=61.56 E-value=77 Score=28.71 Aligned_cols=66 Identities=17% Similarity=0.026 Sum_probs=39.7
Q ss_pred hHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE
Q 020805 50 DRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAE 118 (321)
Q Consensus 50 ~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~ 118 (321)
.=.+...+..+.+.-..+-.++++..-..|+.|.++|..++.+|.+++++-+. ..+......+|.+
T Consensus 131 ~~~Ae~ai~~al~~~~~~l~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~---~~~~~~~~~~g~~ 196 (287)
T TIGR02853 131 IPTAEGAIMMAIEHTDFTIHGSNVMVLGFGRTGMTIARTFSALGARVFVGARS---SADLARITEMGLI 196 (287)
T ss_pred HhHHHHHHHHHHHhcCCCCCCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHHCCCe
Confidence 33444455555443111112356777788999999999999999876665332 2344445555654
No 175
>PRK05993 short chain dehydrogenase; Provisional
Probab=61.38 E-value=1e+02 Score=27.22 Aligned_cols=66 Identities=24% Similarity=0.182 Sum_probs=43.7
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHH
Q 020805 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILA 140 (321)
Q Consensus 71 ~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~ 140 (321)
..+|+..+|.-|.++|......|.+++++... ..+.+.++..|.+++.++-. +.++..+...+..+
T Consensus 6 ~vlItGasggiG~~la~~l~~~G~~Vi~~~r~---~~~~~~l~~~~~~~~~~Dl~-d~~~~~~~~~~~~~ 71 (277)
T PRK05993 6 SILITGCSSGIGAYCARALQSDGWRVFATCRK---EEDVAALEAEGLEAFQLDYA-EPESIAALVAQVLE 71 (277)
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEEEECC---HHHHHHHHHCCceEEEccCC-CHHHHHHHHHHHHH
Confidence 56888888999999999988899987776543 34455666667777666643 22333334444433
No 176
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=61.23 E-value=1.2e+02 Score=27.63 Aligned_cols=53 Identities=26% Similarity=0.436 Sum_probs=38.0
Q ss_pred cCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE
Q 020805 63 KGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAE 118 (321)
Q Consensus 63 ~g~~~~g~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~ 118 (321)
...+.+|...+| ..+|..|.+++..|+..|++.++.+... +.+.+.++.+|++
T Consensus 163 ~~~~~~g~~vlI-~g~g~vg~~~~~lak~~G~~~v~~~~~~--~~~~~~~~~~ga~ 215 (345)
T cd08287 163 SAGVRPGSTVVV-VGDGAVGLCAVLAAKRLGAERIIAMSRH--EDRQALAREFGAT 215 (345)
T ss_pred hcCCCCCCEEEE-ECCCHHHHHHHHHHHHcCCCEEEEECCC--HHHHHHHHHcCCc
Confidence 344556656556 5589999999999999999865555443 4567777888874
No 177
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=61.20 E-value=61 Score=28.10 Aligned_cols=56 Identities=16% Similarity=0.055 Sum_probs=37.1
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeCCC
Q 020805 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTDPA 125 (321)
Q Consensus 70 ~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~-~~~~~~~~~~Ga~v~~~~~~ 125 (321)
...+|+..+|.-|.++|......|.+++++-....+ ....+.++..|.++..+..+
T Consensus 11 k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~D 67 (255)
T PRK07523 11 RRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQGLSAHALAFD 67 (255)
T ss_pred CEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCceEEEEEcc
Confidence 367888888999999999988889986655332211 12233455667777766543
No 178
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=61.15 E-value=63 Score=29.99 Aligned_cols=57 Identities=19% Similarity=0.187 Sum_probs=38.2
Q ss_pred HcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q 020805 62 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 121 (321)
Q Consensus 62 ~~g~~~~g~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~ 121 (321)
+...+++|...+|. .+|..|.+++..|+.+|...++++.. .+.+.+.++.+|++..+
T Consensus 181 ~~~~~~~g~~VlV~-G~g~vG~~a~q~ak~~G~~~vi~~~~--~~~~~~~~~~~Ga~~~i 237 (369)
T cd08301 181 NVAKVKKGSTVAIF-GLGAVGLAVAEGARIRGASRIIGVDL--NPSKFEQAKKFGVTEFV 237 (369)
T ss_pred hhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEcC--CHHHHHHHHHcCCceEE
Confidence 33456677555554 57899999888999999843333322 34678888889985443
No 179
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=61.02 E-value=1.1e+02 Score=28.05 Aligned_cols=73 Identities=21% Similarity=0.164 Sum_probs=50.0
Q ss_pred CCeEEEeeCCChHHHHHHHHHHHcCCeEEEEe-cCCCCHHHHHHHHHcCCEEE--EeCCCCChhHHHHHHHHHHHhCC
Q 020805 69 GESVLIEPTSGNTGIGLAFMAAAKQYRLIITM-PASMSLERRIILRAFGAELV--LTDPAKGMKGAVQKAEEILAKTP 143 (321)
Q Consensus 69 g~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivv-p~~~~~~~~~~~~~~Ga~v~--~~~~~~~~~~~~~~a~~~~~~~~ 143 (321)
|+..+||.+++-.|+++|.--++.|-+.++.= ....-.+..+.++..| +++ .|+-+ +.++..+.+.++.++.+
T Consensus 38 g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g-~~~~y~cdis-~~eei~~~a~~Vk~e~G 113 (300)
T KOG1201|consen 38 GEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIG-EAKAYTCDIS-DREEIYRLAKKVKKEVG 113 (300)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcC-ceeEEEecCC-CHHHHHHHHHHHHHhcC
Confidence 44678888888899999999888888443331 2233455667777777 544 55543 46788888888888763
No 180
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=60.87 E-value=63 Score=28.26 Aligned_cols=72 Identities=15% Similarity=0.023 Sum_probs=43.9
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeCCCC-ChhHHHHHHHHHHHh
Q 020805 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTDPAK-GMKGAVQKAEEILAK 141 (321)
Q Consensus 70 ~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~-~~~~~~~~~~Ga~v~~~~~~~-~~~~~~~~a~~~~~~ 141 (321)
...+|+..+|.-|.++|......|.+++++-..... ....+.++..|.+++.+..+- +.++..+...+..++
T Consensus 11 k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 84 (265)
T PRK07097 11 KIALITGASYGIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRELGIEAHGYVCDVTDEDGVQAMVSQIEKE 84 (265)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHh
Confidence 367888888999999999988999987666332211 122334556687777665432 233334444444433
No 181
>PTZ00354 alcohol dehydrogenase; Provisional
Probab=60.81 E-value=1.3e+02 Score=27.07 Aligned_cols=55 Identities=27% Similarity=0.311 Sum_probs=39.6
Q ss_pred CCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q 020805 64 GLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 121 (321)
Q Consensus 64 g~~~~g~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~ 121 (321)
+.+++|...+|...+|..|.+++..|+.+|.+.+++. .++.+.+.++.+|++..+
T Consensus 136 ~~~~~~~~vlI~ga~g~~g~~~~~~a~~~g~~v~~~~---~~~~~~~~~~~~g~~~~~ 190 (334)
T PTZ00354 136 GDVKKGQSVLIHAGASGVGTAAAQLAEKYGAATIITT---SSEEKVDFCKKLAAIILI 190 (334)
T ss_pred cCCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEe---CCHHHHHHHHHcCCcEEE
Confidence 5566676666666689999999999999999876543 235666677778885433
No 182
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=60.81 E-value=63 Score=27.56 Aligned_cols=33 Identities=21% Similarity=0.233 Sum_probs=28.2
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCC
Q 020805 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPAS 103 (321)
Q Consensus 71 ~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~ 103 (321)
..+|+.++|.-|.+++......|.+++++....
T Consensus 7 ~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~ 39 (238)
T PRK05786 7 KVAIIGVSEGLGYAVAYFALKEGAQVCINSRNE 39 (238)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence 678888999999999999999999888776543
No 183
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=60.79 E-value=53 Score=30.56 Aligned_cols=56 Identities=21% Similarity=0.299 Sum_probs=38.2
Q ss_pred HcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 020805 62 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 120 (321)
Q Consensus 62 ~~g~~~~g~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~ 120 (321)
+...+++|...+|. .+|..|.+++..|+.+|..-++.+. .++.|.+.++.+|++.+
T Consensus 180 ~~~~~~~g~~VlV~-G~G~vG~~a~~~ak~~G~~~vi~~~--~~~~~~~~~~~lGa~~~ 235 (368)
T cd08300 180 NTAKVEPGSTVAVF-GLGAVGLAVIQGAKAAGASRIIGID--INPDKFELAKKFGATDC 235 (368)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEe--CCHHHHHHHHHcCCCEE
Confidence 34556667565555 5689999999999999985344332 23567778888888644
No 184
>PRK12939 short chain dehydrogenase; Provisional
Probab=60.20 E-value=70 Score=27.43 Aligned_cols=56 Identities=14% Similarity=0.072 Sum_probs=37.2
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCC-CHHHHHHHHHcCCEEEEeCCC
Q 020805 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM-SLERRIILRAFGAELVLTDPA 125 (321)
Q Consensus 70 ~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~-~~~~~~~~~~~Ga~v~~~~~~ 125 (321)
...+|+..+|.-|.++|......|.+.+++..... .....+.++..+.++..+..+
T Consensus 8 ~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D 64 (250)
T PRK12939 8 KRALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAGGRAHAIAAD 64 (250)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcc
Confidence 36788888899999999998889998766632211 112234455667777666543
No 185
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=60.17 E-value=1.4e+02 Score=27.50 Aligned_cols=146 Identities=12% Similarity=0.161 Sum_probs=73.2
Q ss_pred HHHHHHHHHcCCCCCCCeEEEeeCC-ChHHHHHHHHHHHcCCeEEEEecCCC-----------C---HHHH--H-HHHHc
Q 020805 54 YSMISDAEAKGLITPGESVLIEPTS-GNTGIGLAFMAAAKQYRLIITMPASM-----------S---LERR--I-ILRAF 115 (321)
Q Consensus 54 ~~~l~~a~~~g~~~~g~~~vv~~Ss-GN~g~AlA~aa~~~G~~~~ivvp~~~-----------~---~~~~--~-~~~~~ 115 (321)
...+..+++++. +.++.... .+.-...--.++..|+|++.+-.... . .... + ..+.+
T Consensus 70 ~~~i~~li~~~v-----dgIiv~~~d~~al~~~l~~a~~~gIpVV~~d~~~~~~~~~~~V~~~~~~~~G~~~~~~l~~~l 144 (336)
T PRK15408 70 VQLINNFVNQGY-----NAIIVSAVSPDGLCPALKRAMQRGVKVLTWDSDTKPECRSYYINQGTPEQLGSMLVEMAAKQV 144 (336)
T ss_pred HHHHHHHHHcCC-----CEEEEecCCHHHHHHHHHHHHHCCCeEEEeCCCCCCccceEEEecCCHHHHHHHHHHHHHHhc
Confidence 356677777776 44555432 23223444457788999888743210 0 0111 1 12233
Q ss_pred C---CEEEEeCCCCCh---hHHHHHHHHH-HHhCCCeEEcC-CCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCch
Q 020805 116 G---AELVLTDPAKGM---KGAVQKAEEI-LAKTPNAYMLQ-QFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGG 187 (321)
Q Consensus 116 G---a~v~~~~~~~~~---~~~~~~a~~~-~~~~~~~~~~~-~~~~~~~~~~g~~~~~~Ei~~ql~~~~d~vv~p~G~Gg 187 (321)
| .+|..+.+.... .+..+-.++. .+++++.-++. ++.+... ..++. ...++++.- +++|.||++ +..
T Consensus 145 ~~g~gki~il~g~~~~~~~~~r~~g~~~~l~~~~p~~~vv~~~~~~~d~-~~a~~-~~~~lL~~~-pdi~aI~~~--~~~ 219 (336)
T PRK15408 145 GKDKAKVAFFYSSPTVTDQNQWVKEAKAKIAKEHPGWEIVTTQFGYNDA-TKSLQ-TAEGILKAY-PDLDAIIAP--DAN 219 (336)
T ss_pred CCCCCEEEEEECCCCCccHHHHHHHHHHHHHhhCCCCEEEeecCCCCcH-HHHHH-HHHHHHHHC-CCCcEEEEC--CCc
Confidence 3 577666432211 1222222222 23444444443 2222221 22222 444555553 678999987 444
Q ss_pred hHHHHHHHHHhcCC-CcEEEEEe
Q 020805 188 TITGAGKFLKEKNP-NIKLYGIE 209 (321)
Q Consensus 188 ~~aGi~~~~k~~~~-~~~vigv~ 209 (321)
.+.|++.++++.+. ++.|+|..
T Consensus 220 ~~~Ga~~Al~~~g~~~v~VvG~D 242 (336)
T PRK15408 220 ALPAAAQAAENLKRDKVAIVGFS 242 (336)
T ss_pred cHHHHHHHHHhCCCCCEEEEEeC
Confidence 45578889987653 56777765
No 186
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=60.02 E-value=63 Score=30.00 Aligned_cols=56 Identities=20% Similarity=0.232 Sum_probs=38.6
Q ss_pred HcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 020805 62 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 120 (321)
Q Consensus 62 ~~g~~~~g~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~ 120 (321)
+.+.+.+|...+|. .+|..|.+++..|+.+|..-++++.. .+.|.+.++.+|++-+
T Consensus 178 ~~~~~~~g~~vlV~-G~g~vG~~~~~~a~~~G~~~Vi~~~~--~~~~~~~~~~~ga~~~ 233 (365)
T cd08277 178 NTAKVEPGSTVAVF-GLGAVGLSAIMGAKIAGASRIIGVDI--NEDKFEKAKEFGATDF 233 (365)
T ss_pred hhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEeC--CHHHHHHHHHcCCCcE
Confidence 44556777665555 57999999999999999853333322 4567778888888533
No 187
>PRK13243 glyoxylate reductase; Reviewed
Probab=59.90 E-value=72 Score=29.57 Aligned_cols=104 Identities=21% Similarity=0.178 Sum_probs=65.0
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEcCC
Q 020805 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQ 150 (321)
Q Consensus 71 ~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 150 (321)
++|..-.-|+-|.++|..++.+|++++++-|.. ... ....+|.+. . +. .++.++. +...++-
T Consensus 151 ktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~-~~~---~~~~~~~~~---~---~l-------~ell~~a-DiV~l~l 212 (333)
T PRK13243 151 KTIGIIGFGRIGQAVARRAKGFGMRILYYSRTR-KPE---AEKELGAEY---R---PL-------EELLRES-DFVSLHV 212 (333)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCC-Chh---hHHHcCCEe---c---CH-------HHHHhhC-CEEEEeC
Confidence 567777889999999999999999987765532 221 223445421 1 11 2233343 5555433
Q ss_pred CCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhH--HHHHHHHHh
Q 020805 151 FENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTI--TGAGKFLKE 198 (321)
Q Consensus 151 ~~~~~~~~~g~~~~~~Ei~~ql~~~~d~vv~p~G~Gg~~--aGi~~~~k~ 198 (321)
..++ .-...+..|.++++ +++.+++-++.|+.+ ..+..++++
T Consensus 213 P~t~----~T~~~i~~~~~~~m--k~ga~lIN~aRg~~vd~~aL~~aL~~ 256 (333)
T PRK13243 213 PLTK----ETYHMINEERLKLM--KPTAILVNTARGKVVDTKALVKALKE 256 (333)
T ss_pred CCCh----HHhhccCHHHHhcC--CCCeEEEECcCchhcCHHHHHHHHHc
Confidence 2222 22344566888887 578999999999987 445555553
No 188
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=59.88 E-value=69 Score=29.13 Aligned_cols=52 Identities=25% Similarity=0.261 Sum_probs=35.7
Q ss_pred CCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEE
Q 020805 65 LITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAEL 119 (321)
Q Consensus 65 ~~~~g~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v 119 (321)
.++++...+|...++..|.+++..|+.+|++.+++.+. +.+.+.++.+|++-
T Consensus 162 ~~~~~~~vlV~g~~~~vg~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~~ 213 (341)
T cd08297 162 GLKPGDWVVISGAGGGLGHLGVQYAKAMGLRVIAIDVG---DEKLELAKELGADA 213 (341)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCC---HHHHHHHHHcCCcE
Confidence 45666566666666779999999999999876555333 35566667777543
No 189
>cd08288 MDR_yhdh Yhdh putative quinone oxidoreductases. Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catal
Probab=59.64 E-value=69 Score=28.80 Aligned_cols=50 Identities=22% Similarity=0.290 Sum_probs=36.5
Q ss_pred CCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 020805 68 PGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 120 (321)
Q Consensus 68 ~g~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~ 120 (321)
+|...+|...+|..|.+++..|+.+|.+.+++.. ++.|.+.++.+|++-+
T Consensus 146 ~~~~vlI~ga~g~vg~~~~~~A~~~G~~vi~~~~---~~~~~~~~~~~g~~~~ 195 (324)
T cd08288 146 GDGPVLVTGAAGGVGSVAVALLARLGYEVVASTG---RPEEADYLRSLGASEI 195 (324)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeC---CHHHHHHHHhcCCCEE
Confidence 3445555555699999999999999998665543 4467788888998543
No 190
>PRK07550 hypothetical protein; Provisional
Probab=59.29 E-value=1.5e+02 Score=27.59 Aligned_cols=77 Identities=14% Similarity=0.103 Sum_probs=45.3
Q ss_pred CCCchhhHHHHHHHHHHHHcCC-CCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEe
Q 020805 44 PCSSVKDRIGYSMISDAEAKGL-ITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLT 122 (321)
Q Consensus 44 ptGS~K~R~a~~~l~~a~~~g~-~~~g~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~ 122 (321)
+.|.-..|.+..-.... ..|. +++ ..|+..++++.+..++..+- .+-.-.|++|.-.-......++..|++++.+
T Consensus 66 ~~G~~~lr~~ia~~~~~-~~g~~~~~--~~i~~t~G~~~al~~~~~~l-~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v 141 (386)
T PRK07550 66 VEGLPELREAYAAHYSR-LYGAAISP--EQVHITSGCNQAFWAAMVTL-AGAGDEVILPLPWYFNHKMWLDMLGIRPVYL 141 (386)
T ss_pred CCCCHHHHHHHHHHHHH-HhCCCCCc--ceEEEecCcHHHHHHHHHHh-cCCCCEEEEcCCCCcchHHHHHhcCCEEEEE
Confidence 35666667554432221 1232 333 34666677777766655443 3444567777654444456778999999988
Q ss_pred CC
Q 020805 123 DP 124 (321)
Q Consensus 123 ~~ 124 (321)
+.
T Consensus 142 ~~ 143 (386)
T PRK07550 142 PC 143 (386)
T ss_pred ec
Confidence 75
No 191
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=59.18 E-value=77 Score=28.68 Aligned_cols=56 Identities=18% Similarity=0.109 Sum_probs=39.3
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCC--CHHHHHHHHHcCCEEEEeCCC
Q 020805 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM--SLERRIILRAFGAELVLTDPA 125 (321)
Q Consensus 70 ~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~--~~~~~~~~~~~Ga~v~~~~~~ 125 (321)
...+|+..+|.-|.++|..-...|.++++.-.... .....+.++..|.+++.+..+
T Consensus 13 k~~lVTGas~gIG~~ia~~L~~~Ga~Vv~~~~~~~~~~~~~~~~i~~~g~~~~~~~~D 70 (306)
T PRK07792 13 KVAVVTGAAAGLGRAEALGLARLGATVVVNDVASALDASDVLDEIRAAGAKAVAVAGD 70 (306)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEecCCchhHHHHHHHHHHhcCCeEEEEeCC
Confidence 36788888899999999988888998766543221 123345667788888777654
No 192
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=58.96 E-value=93 Score=26.41 Aligned_cols=54 Identities=24% Similarity=0.199 Sum_probs=38.0
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHH-HHHHHHHcCCEEEEeCC
Q 020805 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLE-RRIILRAFGAELVLTDP 124 (321)
Q Consensus 71 ~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~-~~~~~~~~Ga~v~~~~~ 124 (321)
..+|+..+|..|..++......|..++++........ ....++..|.++..+..
T Consensus 7 ~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 61 (246)
T PRK05653 7 TALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAELRAAGGEARVLVF 61 (246)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHHHHhcCCceEEEEc
Confidence 6788888999999999998888999666654432222 23445667888777554
No 193
>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]
Probab=58.75 E-value=81 Score=29.02 Aligned_cols=58 Identities=21% Similarity=0.267 Sum_probs=43.3
Q ss_pred HHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHH-cCCEEEE
Q 020805 61 EAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRA-FGAELVL 121 (321)
Q Consensus 61 ~~~g~~~~g~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~-~Ga~v~~ 121 (321)
++-|..++|+..+|++.+|-.|.-+--.|+..|.+++-+.- +++|.+.++. +|-+...
T Consensus 143 l~igqpk~GetvvVSaAaGaVGsvvgQiAKlkG~rVVGiaG---g~eK~~~l~~~lGfD~~i 201 (340)
T COG2130 143 LDIGQPKAGETVVVSAAAGAVGSVVGQIAKLKGCRVVGIAG---GAEKCDFLTEELGFDAGI 201 (340)
T ss_pred HHhcCCCCCCEEEEEecccccchHHHHHHHhhCCeEEEecC---CHHHHHHHHHhcCCceee
Confidence 34566677878888999999998888888888988887754 4578887777 6655543
No 194
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=58.70 E-value=67 Score=29.29 Aligned_cols=50 Identities=30% Similarity=0.325 Sum_probs=34.5
Q ss_pred CCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 020805 68 PGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 120 (321)
Q Consensus 68 ~g~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~ 120 (321)
+|...+|. .+|..|.++...|+.+|.+.++++ ..++.+.+.++.+|++.+
T Consensus 163 ~g~~vlV~-~~g~vg~~~~~la~~~G~~~v~~~--~~~~~~~~~~~~lg~~~~ 212 (341)
T PRK05396 163 VGEDVLIT-GAGPIGIMAAAVAKHVGARHVVIT--DVNEYRLELARKMGATRA 212 (341)
T ss_pred CCCeEEEE-CCCHHHHHHHHHHHHcCCCEEEEE--cCCHHHHHHHHHhCCcEE
Confidence 45455554 468888888888999998544444 345567777788887543
No 195
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=58.23 E-value=1e+02 Score=26.38 Aligned_cols=56 Identities=18% Similarity=0.255 Sum_probs=39.2
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC--HHHHHHHHHcCCEEEEeCCC
Q 020805 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS--LERRIILRAFGAELVLTDPA 125 (321)
Q Consensus 70 ~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~--~~~~~~~~~~Ga~v~~~~~~ 125 (321)
+..+|+..+|.-|.++|..-...|.+.+++...+.+ ....+.++..|.++..+..+
T Consensus 5 ~~vlItGa~g~iG~~~a~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D 62 (250)
T PRK08063 5 KVALVTGSSRGIGKAIALRLAEEGYDIAVNYARSRKAAEETAEEIEALGRKALAVKAN 62 (250)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcC
Confidence 367888888999999999988899987765433322 12234566778888776543
No 196
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=58.13 E-value=1.5e+02 Score=27.19 Aligned_cols=52 Identities=29% Similarity=0.411 Sum_probs=35.6
Q ss_pred CCCCCCCeEEEeeCCChHHHHHHHHHHHcCC-eEEEEecCCCCHHHHHHHHHcCCEE
Q 020805 64 GLITPGESVLIEPTSGNTGIGLAFMAAAKQY-RLIITMPASMSLERRIILRAFGAEL 119 (321)
Q Consensus 64 g~~~~g~~~vv~~SsGN~g~AlA~aa~~~G~-~~~ivvp~~~~~~~~~~~~~~Ga~v 119 (321)
+...+|...+|. .+|..|.+++..|+.+|+ +++++. .++.+...++.+|++-
T Consensus 173 ~~~~~g~~vlI~-g~g~vG~~~~~lak~~G~~~v~~~~---~~~~~~~~~~~~g~~~ 225 (361)
T cd08231 173 GPVGAGDTVVVQ-GAGPLGLYAVAAAKLAGARRVIVID---GSPERLELAREFGADA 225 (361)
T ss_pred cCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEc---CCHHHHHHHHHcCCCe
Confidence 334456565665 579999999999999999 554442 2456677777888743
No 197
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=58.10 E-value=43 Score=32.36 Aligned_cols=53 Identities=13% Similarity=0.033 Sum_probs=41.3
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCC-----CCHHHHHHHHHcCCEEEEeC
Q 020805 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPAS-----MSLERRIILRAFGAELVLTD 123 (321)
Q Consensus 71 ~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~-----~~~~~~~~~~~~Ga~v~~~~ 123 (321)
+.|+...+||.|.-+|..+.++|.+++++.... .....++.++..|.+++...
T Consensus 273 k~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~l~~~GV~~~~~~ 330 (449)
T TIGR01316 273 KSVVVIGGGNTAVDSARTALRLGAEVHCLYRRTREDMTARVEEIAHAEEEGVKFHFLC 330 (449)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEeecCcccCCCCHHHHHHHHhCCCEEEecc
Confidence 468889999999999999999999999887653 22344566778888887544
No 198
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=58.07 E-value=45 Score=27.36 Aligned_cols=51 Identities=22% Similarity=0.274 Sum_probs=40.5
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCC
Q 020805 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 124 (321)
Q Consensus 71 ~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~ 124 (321)
..|+...+||-|...+..+..+|.+.+++ +....+++..+..++..+.+..
T Consensus 21 ~~vvv~G~G~vg~gA~~~~~~lGa~v~~~---d~~~~~~~~~~~~~~~~i~~~~ 71 (168)
T PF01262_consen 21 AKVVVTGAGRVGQGAAEIAKGLGAEVVVP---DERPERLRQLESLGAYFIEVDY 71 (168)
T ss_dssp -EEEEESTSHHHHHHHHHHHHTT-EEEEE---ESSHHHHHHHHHTTTEESEETT
T ss_pred eEEEEECCCHHHHHHHHHHhHCCCEEEec---cCCHHHHHhhhcccCceEEEcc
Confidence 45777889999999999999999987666 3456778888999999888853
No 199
>PRK06182 short chain dehydrogenase; Validated
Probab=58.00 E-value=1.3e+02 Score=26.36 Aligned_cols=67 Identities=18% Similarity=0.180 Sum_probs=44.2
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHh
Q 020805 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAK 141 (321)
Q Consensus 71 ~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~ 141 (321)
..+|+.++|--|.++|......|.+++++... ..+++.+...+.+++.++-. +.++..+...+..++
T Consensus 5 ~vlItGasggiG~~la~~l~~~G~~V~~~~r~---~~~l~~~~~~~~~~~~~Dv~-~~~~~~~~~~~~~~~ 71 (273)
T PRK06182 5 VALVTGASSGIGKATARRLAAQGYTVYGAARR---VDKMEDLASLGVHPLSLDVT-DEASIKAAVDTIIAE 71 (273)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHhCCCeEEEeeCC-CHHHHHHHHHHHHHh
Confidence 66888888999999999988899988776543 34455555567777666643 233344444444433
No 200
>PRK06172 short chain dehydrogenase; Provisional
Probab=57.39 E-value=82 Score=27.19 Aligned_cols=56 Identities=14% Similarity=0.204 Sum_probs=38.7
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeCCC
Q 020805 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTDPA 125 (321)
Q Consensus 70 ~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~-~~~~~~~~~~Ga~v~~~~~~ 125 (321)
...+|+..+|.-|.++|......|.+++++...... +...+.++..+.++..+..+
T Consensus 8 k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D 64 (253)
T PRK06172 8 KVALVTGGAAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREAGGEALFVACD 64 (253)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcC
Confidence 367888888999999999988899987776543221 22244556678777665543
No 201
>COG0623 FabI Enoyl-[acyl-carrier-protein]
Probab=57.26 E-value=56 Score=28.79 Aligned_cols=68 Identities=22% Similarity=0.265 Sum_probs=35.9
Q ss_pred HHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEcCCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecC
Q 020805 110 IILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIG 184 (321)
Q Consensus 110 ~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~Ei~~ql~~~~d~vv~p~G 184 (321)
+.+...||++.++-.. +....+.++++++. +..++-|.|- .+ .+.-..+..+|-++. +++|-+|.+++
T Consensus 26 k~l~~~GAeL~fTy~~---e~l~krv~~la~~~-~s~~v~~cDV-~~-d~~i~~~f~~i~~~~-g~lD~lVHsIa 93 (259)
T COG0623 26 KALAEQGAELAFTYQG---ERLEKRVEELAEEL-GSDLVLPCDV-TN-DESIDALFATIKKKW-GKLDGLVHSIA 93 (259)
T ss_pred HHHHHcCCEEEEEecc---HHHHHHHHHHHhhc-cCCeEEecCC-CC-HHHHHHHHHHHHHhh-CcccEEEEEec
Confidence 3566677777776542 24455666676665 3333334322 22 233344444444443 56777777665
No 202
>PRK09134 short chain dehydrogenase; Provisional
Probab=57.14 E-value=1.1e+02 Score=26.49 Aligned_cols=55 Identities=18% Similarity=0.229 Sum_probs=37.8
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCH--HHHHHHHHcCCEEEEeCC
Q 020805 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSL--ERRIILRAFGAELVLTDP 124 (321)
Q Consensus 70 ~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~--~~~~~~~~~Ga~v~~~~~ 124 (321)
+..+|+..+|.-|.++|......|..++++...+.+. .-...++..|.++..+..
T Consensus 10 k~vlItGas~giG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (258)
T PRK09134 10 RAALVTGAARRIGRAIALDLAAHGFDVAVHYNRSRDEAEALAAEIRALGRRAVALQA 66 (258)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCeEEEEEc
Confidence 3678888999999999999999999887765433211 122344455777766554
No 203
>PRK06128 oxidoreductase; Provisional
Probab=57.12 E-value=1.2e+02 Score=27.27 Aligned_cols=70 Identities=16% Similarity=0.069 Sum_probs=45.3
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCC---CHHHHHHHHHcCCEEEEeCCCC-ChhHHHHHHHHHHH
Q 020805 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM---SLERRIILRAFGAELVLTDPAK-GMKGAVQKAEEILA 140 (321)
Q Consensus 71 ~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~---~~~~~~~~~~~Ga~v~~~~~~~-~~~~~~~~a~~~~~ 140 (321)
..+|+..+|--|.++|..-...|.++++...... .....+.++..|.++..+..+- +.++..+...+..+
T Consensus 57 ~vlITGas~gIG~~~a~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~ 130 (300)
T PRK06128 57 KALITGADSGIGRATAIAFAREGADIALNYLPEEEQDAAEVVQLIQAEGRKAVALPGDLKDEAFCRQLVERAVK 130 (300)
T ss_pred EEEEecCCCcHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHHHH
Confidence 6788888899999999998889998876543221 1233456677788877665432 22333444444444
No 204
>PRK07478 short chain dehydrogenase; Provisional
Probab=57.12 E-value=81 Score=27.29 Aligned_cols=71 Identities=15% Similarity=0.062 Sum_probs=44.1
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeCCCC-ChhHHHHHHHHHHHh
Q 020805 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTDPAK-GMKGAVQKAEEILAK 141 (321)
Q Consensus 71 ~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~-~~~~~~~~~~Ga~v~~~~~~~-~~~~~~~~a~~~~~~ 141 (321)
..+|+..+|.-|.++|..-...|.+++++.....+ ....+.++..|.++..+..+. +.++..+...+..++
T Consensus 8 ~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 80 (254)
T PRK07478 8 VAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEGGEAVALAGDVRDEAYAKALVALAVER 80 (254)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHh
Confidence 67888888889999999988899987766543211 112334566777776665432 233444445555444
No 205
>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional
Probab=57.04 E-value=1.5e+02 Score=26.69 Aligned_cols=53 Identities=26% Similarity=0.227 Sum_probs=36.2
Q ss_pred cCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE
Q 020805 63 KGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAE 118 (321)
Q Consensus 63 ~g~~~~g~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~ 118 (321)
.+.+.+|...+|....|..|.+++..|+.+|++.+.+.+ ...+.+.++.+|++
T Consensus 135 ~~~~~~g~~vlI~g~~g~ig~~~~~lak~~G~~v~~~~~---~~~~~~~~~~~g~~ 187 (327)
T PRK10754 135 TYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVG---SAQKAQRAKKAGAW 187 (327)
T ss_pred hcCCCCCCEEEEEeCCcHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHCCCC
Confidence 355666656555556788999999999999988655533 34455666777764
No 206
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=57.02 E-value=1.2e+02 Score=27.83 Aligned_cols=55 Identities=20% Similarity=0.211 Sum_probs=37.4
Q ss_pred HHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE
Q 020805 61 EAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAE 118 (321)
Q Consensus 61 ~~~g~~~~g~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~ 118 (321)
.+...+++|...+|. .+|..|.+++..|+.+|...++.+... +.+.+..+.+|++
T Consensus 159 ~~~~~~~~g~~vlI~-g~g~iG~~~~~lak~~G~~~v~~~~~~--~~~~~~~~~~g~~ 213 (351)
T cd08285 159 AELANIKLGDTVAVF-GIGPVGLMAVAGARLRGAGRIIAVGSR--PNRVELAKEYGAT 213 (351)
T ss_pred HHccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEeCC--HHHHHHHHHcCCc
Confidence 344556666565555 578899999999999998655544333 4567777778874
No 207
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=56.95 E-value=1.4e+02 Score=28.37 Aligned_cols=130 Identities=13% Similarity=0.090 Sum_probs=73.2
Q ss_pred CCchhhHHHHHHHHH----HHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 020805 45 CSSVKDRIGYSMISD----AEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 120 (321)
Q Consensus 45 tGS~K~R~a~~~l~~----a~~~g~~~~g~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~ 120 (321)
.|.+..=.|.+.+.. +++.|..-. +++|-.-.-||-|..+|..++.+|++++++=|..... -+. ..
T Consensus 88 pg~na~aVAE~v~~~lL~l~r~~g~~l~-gktvGIIG~G~IG~~va~~l~a~G~~V~~~Dp~~~~~--------~~~-~~ 157 (381)
T PRK00257 88 PGCNARGVVDYVLGSLLTLAEREGVDLA-ERTYGVVGAGHVGGRLVRVLRGLGWKVLVCDPPRQEA--------EGD-GD 157 (381)
T ss_pred CCcChHHHHHHHHHHHHHHhcccCCCcC-cCEEEEECCCHHHHHHHHHHHHCCCEEEEECCccccc--------ccC-cc
Confidence 355555566655433 333343222 3567777889999999999999999998885532110 010 00
Q ss_pred EeCCCCChhHHHHHHHHHHHhCCCeEEcCCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhH--HHHHHHHHh
Q 020805 121 LTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTI--TGAGKFLKE 198 (321)
Q Consensus 121 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~Ei~~ql~~~~d~vv~p~G~Gg~~--aGi~~~~k~ 198 (321)
+.+ ..++.++- +...++--.++.....-+.-+..|.++++ +++.+++-++.|+.+ ..+..+++.
T Consensus 158 -------~~~----l~ell~~a-DiV~lh~Plt~~g~~~T~~li~~~~l~~m--k~gailIN~aRG~vVde~AL~~aL~~ 223 (381)
T PRK00257 158 -------FVS----LERILEEC-DVISLHTPLTKEGEHPTRHLLDEAFLASL--RPGAWLINASRGAVVDNQALREALLS 223 (381)
T ss_pred -------ccC----HHHHHhhC-CEEEEeCcCCCCccccccccCCHHHHhcC--CCCeEEEECCCCcccCHHHHHHHHHh
Confidence 011 23344443 44443222122100112345566888887 578999999999987 455556654
No 208
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=56.87 E-value=1.1e+02 Score=27.81 Aligned_cols=47 Identities=17% Similarity=0.103 Sum_probs=31.7
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 020805 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 120 (321)
Q Consensus 71 ~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~ 120 (321)
.++..-..|+.|++++..++.+|.+++++-+. ..+....+.+|++.+
T Consensus 153 ~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~---~~~~~~~~~~G~~~~ 199 (296)
T PRK08306 153 SNVLVLGFGRTGMTLARTLKALGANVTVGARK---SAHLARITEMGLSPF 199 (296)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEECC---HHHHHHHHHcCCeee
Confidence 45666667888888888888888766665332 344556667777643
No 209
>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....
Probab=56.72 E-value=72 Score=26.39 Aligned_cols=71 Identities=18% Similarity=0.124 Sum_probs=42.7
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCC-----CCHHHHHHHHHcCCEEEEeCCCCC-hhHHHHHHHHHHHh
Q 020805 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPAS-----MSLERRIILRAFGAELVLTDPAKG-MKGAVQKAEEILAK 141 (321)
Q Consensus 71 ~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~-----~~~~~~~~~~~~Ga~v~~~~~~~~-~~~~~~~a~~~~~~ 141 (321)
.-+|+...|..|..+|..-...+-.-++++... .....++.++..|++|.....+-. .++..+...++.++
T Consensus 2 tylitGG~gglg~~la~~La~~~~~~~il~~r~~~~~~~~~~~i~~l~~~g~~v~~~~~Dv~d~~~v~~~~~~~~~~ 78 (181)
T PF08659_consen 2 TYLITGGLGGLGQSLARWLAERGARRLILLGRSGAPSAEAEAAIRELESAGARVEYVQCDVTDPEAVAAALAQLRQR 78 (181)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT-SEEEEEESSGGGSTTHHHHHHHHHHTT-EEEEEE--TTSHHHHHHHHHTSHTT
T ss_pred EEEEECCccHHHHHHHHHHHHcCCCEEEEeccCCCccHHHHHHHHHHHhCCCceeeeccCccCHHHHHHHHHHHHhc
Confidence 346777789999999988666665555555444 234578889999999998875432 33333333444333
No 210
>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family. This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous
Probab=56.65 E-value=80 Score=28.43 Aligned_cols=53 Identities=21% Similarity=0.305 Sum_probs=36.1
Q ss_pred CCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE
Q 020805 64 GLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAE 118 (321)
Q Consensus 64 g~~~~g~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~ 118 (321)
+.+.++...+|. .+|..|.+++..|+..|++.+ ++-......+.+.++.+|++
T Consensus 160 ~~~~~g~~vlI~-g~g~~g~~~~~la~~~G~~v~-~~~~~~~~~~~~~~~~~g~~ 212 (306)
T cd08258 160 SGIRPGDTVVVF-GPGPIGLLAAQVAKLQGATVV-VVGTEKDEVRLDVAKELGAD 212 (306)
T ss_pred cCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCEEE-EECCCCCHHHHHHHHHhCCc
Confidence 445566566664 468899999999999998844 33233346677777878863
No 211
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=56.54 E-value=83 Score=26.94 Aligned_cols=55 Identities=18% Similarity=0.087 Sum_probs=37.0
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeCC
Q 020805 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTDP 124 (321)
Q Consensus 70 ~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~-~~~~~~~~~~Ga~v~~~~~ 124 (321)
...+|+..+|.-|.++|......|..++++...... ....+.++..|.++..+..
T Consensus 6 ~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 61 (253)
T PRK08217 6 KVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGALGTEVRGYAA 61 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEc
Confidence 367888888999999999988889886665433211 2223445666888766554
No 212
>PRK08862 short chain dehydrogenase; Provisional
Probab=56.49 E-value=81 Score=27.14 Aligned_cols=71 Identities=11% Similarity=0.006 Sum_probs=41.6
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeCCC-CChhHHHHHHHHHHHh
Q 020805 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTDPA-KGMKGAVQKAEEILAK 141 (321)
Q Consensus 71 ~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~-~~~~~~~~~~Ga~v~~~~~~-~~~~~~~~~a~~~~~~ 141 (321)
..+|+..++.-|.++|......|.+++++-..... ....+.++..|.+++.+..+ .+.++..+...+..++
T Consensus 7 ~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 79 (227)
T PRK08862 7 IILITSAGSVLGRTISCHFARLGATLILCDQDQSALKDTYEQCSALTDNVYSFQLKDFSQESIRHLFDAIEQQ 79 (227)
T ss_pred EEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCCeEEEEccCCCHHHHHHHHHHHHHH
Confidence 66777778888999999999999987665333211 11234456667776554322 2233334444444443
No 213
>PRK08278 short chain dehydrogenase; Provisional
Probab=56.41 E-value=1.2e+02 Score=26.81 Aligned_cols=56 Identities=16% Similarity=0.196 Sum_probs=38.9
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCH--------HHHHHHHHcCCEEEEeCCC
Q 020805 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSL--------ERRIILRAFGAELVLTDPA 125 (321)
Q Consensus 70 ~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~--------~~~~~~~~~Ga~v~~~~~~ 125 (321)
...+|+..+|--|.++|......|.+++++.....+. .-.+.++..|.+++.+..+
T Consensus 7 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~D 70 (273)
T PRK08278 7 KTLFITGASRGIGLAIALRAARDGANIVIAAKTAEPHPKLPGTIHTAAEEIEAAGGQALPLVGD 70 (273)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEecccccccchhhHHHHHHHHHHhcCCceEEEEec
Confidence 3678888888899999999999999888776543221 1123456678877766543
No 214
>PRK08643 acetoin reductase; Validated
Probab=56.28 E-value=1e+02 Score=26.57 Aligned_cols=55 Identities=11% Similarity=0.106 Sum_probs=36.8
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCH-HHHHHHHHcCCEEEEeCCC
Q 020805 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSL-ERRIILRAFGAELVLTDPA 125 (321)
Q Consensus 71 ~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~-~~~~~~~~~Ga~v~~~~~~ 125 (321)
..+|+..+|.-|.++|......|.+++++-...... .....++..|.++..+..+
T Consensus 4 ~~lItGas~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D 59 (256)
T PRK08643 4 VALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKDGGKAIAVKAD 59 (256)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECC
Confidence 568888889999999999888998876664432221 1223445567777666543
No 215
>PRK06181 short chain dehydrogenase; Provisional
Probab=56.26 E-value=79 Score=27.48 Aligned_cols=55 Identities=20% Similarity=0.196 Sum_probs=37.4
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeCCC
Q 020805 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTDPA 125 (321)
Q Consensus 71 ~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~-~~~~~~~~~~Ga~v~~~~~~ 125 (321)
..+|+..+|.-|.+++......|.+++++...... ....+.++..|.++..+..+
T Consensus 3 ~vlVtGasg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D 58 (263)
T PRK06181 3 VVIITGASEGIGRALAVRLARAGAQLVLAARNETRLASLAQELADHGGEALVVPTD 58 (263)
T ss_pred EEEEecCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcc
Confidence 56788888999999999988999987777544211 12233455667777665543
No 216
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=56.24 E-value=80 Score=28.56 Aligned_cols=49 Identities=22% Similarity=0.310 Sum_probs=29.8
Q ss_pred eEEEe-eCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEe
Q 020805 71 SVLIE-PTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLT 122 (321)
Q Consensus 71 ~~vv~-~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~ 122 (321)
..++. ..+|..|.++...|+.+|.+.+++.+ ++.|.+.++.+|++-++.
T Consensus 145 ~vlv~~~g~g~vG~~a~q~a~~~G~~vi~~~~---~~~~~~~~~~~g~~~~i~ 194 (324)
T cd08291 145 KAVVHTAAASALGRMLVRLCKADGIKVINIVR---RKEQVDLLKKIGAEYVLN 194 (324)
T ss_pred cEEEEccCccHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCcEEEE
Confidence 44443 45677777777778888876444322 345666667777765443
No 217
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=56.05 E-value=95 Score=26.50 Aligned_cols=55 Identities=15% Similarity=0.181 Sum_probs=37.5
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeCCC
Q 020805 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTDPA 125 (321)
Q Consensus 71 ~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~-~~~~~~~~~~Ga~v~~~~~~ 125 (321)
..+|+..+|..|.+++......|.+++++.....+ ......++..|.+++.+..+
T Consensus 9 ~vlVtG~sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D 64 (239)
T PRK07666 9 NALITGAGRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAYGVKVVIATAD 64 (239)
T ss_pred EEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCeEEEEECC
Confidence 56888888999999999888899987776544321 11233455667777766543
No 218
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=56.00 E-value=89 Score=26.45 Aligned_cols=155 Identities=17% Similarity=0.124 Sum_probs=78.3
Q ss_pred eEEEEeCCCCCCCchh--hHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCC-CHHHHH
Q 020805 34 RIAAKLEMMEPCSSVK--DRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM-SLERRI 110 (321)
Q Consensus 34 ~v~~K~E~~~ptGS~K--~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~-~~~~~~ 110 (321)
++|...|..++| | +|... ++.+ + ++|| ..+..-.+|.-++++-++...-..+++.+=.+.. -..-.+
T Consensus 7 ~~F~~~~~~p~T---K~EIRal~--ls~L-~---~~~g-~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~ 76 (187)
T COG2242 7 ELFERDEGGPMT---KEEIRALT--LSKL-R---PRPG-DRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIER 76 (187)
T ss_pred hhhccCCCCCCc---HHHHHHHH--HHhh-C---CCCC-CEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHH
Confidence 566677776666 4 33322 2222 1 3444 5688888888888887773333444444422211 112233
Q ss_pred HHHHcCCE-EEEeCCCCChhHHHHHHHHHHHhCCCeEEcCCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhH
Q 020805 111 ILRAFGAE-LVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTI 189 (321)
Q Consensus 111 ~~~~~Ga~-v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~Ei~~ql~~~~d~vv~p~G~Gg~~ 189 (321)
-++.||.+ +..+.++. .++. ..+. .++..|+....+ + ..+-...++-+ ..-..+|+-+-+=-++
T Consensus 77 N~~~fg~~n~~vv~g~A--p~~L---~~~~--~~daiFIGGg~~----i---~~ile~~~~~l-~~ggrlV~naitlE~~ 141 (187)
T COG2242 77 NAARFGVDNLEVVEGDA--PEAL---PDLP--SPDAIFIGGGGN----I---EEILEAAWERL-KPGGRLVANAITLETL 141 (187)
T ss_pred HHHHhCCCcEEEEeccc--hHhh---cCCC--CCCEEEECCCCC----H---HHHHHHHHHHc-CcCCeEEEEeecHHHH
Confidence 45667754 44555421 1111 1111 245666544211 1 11111112223 2235677777777778
Q ss_pred HHHHHHHHhcCCCcEEEEEecCCCC
Q 020805 190 TGAGKFLKEKNPNIKLYGIEPTESP 214 (321)
Q Consensus 190 aGi~~~~k~~~~~~~vigv~~~~~~ 214 (321)
+-+...+++++-. .++-++...+.
T Consensus 142 ~~a~~~~~~~g~~-ei~~v~is~~~ 165 (187)
T COG2242 142 AKALEALEQLGGR-EIVQVQISRGK 165 (187)
T ss_pred HHHHHHHHHcCCc-eEEEEEeecce
Confidence 8888888877765 66666655543
No 219
>PRK07806 short chain dehydrogenase; Provisional
Probab=55.59 E-value=1.1e+02 Score=26.16 Aligned_cols=56 Identities=13% Similarity=0.126 Sum_probs=37.6
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC--HHHHHHHHHcCCEEEEeCCC
Q 020805 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS--LERRIILRAFGAELVLTDPA 125 (321)
Q Consensus 70 ~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~--~~~~~~~~~~Ga~v~~~~~~ 125 (321)
...+|+..+|.-|.+++......|.+++++...... ..-.+.++..|.++..+..+
T Consensus 7 k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D 64 (248)
T PRK07806 7 KTALVTGSSRGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAAGGRASAVGAD 64 (248)
T ss_pred cEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhcCCceEEEEcC
Confidence 367888888999999999988899998776553321 11123345567777665543
No 220
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=55.58 E-value=78 Score=28.58 Aligned_cols=53 Identities=15% Similarity=0.164 Sum_probs=37.2
Q ss_pred HcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE
Q 020805 62 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAE 118 (321)
Q Consensus 62 ~~g~~~~g~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~ 118 (321)
+...++++...+| ..+|..|.+++..|+..|++.+++.+.. .+.+.++.+|++
T Consensus 161 ~~~~~~~~~~vlV-~g~g~vg~~~~~la~~~g~~v~~~~~~~---~~~~~~~~~g~~ 213 (329)
T cd08298 161 KLAGLKPGQRLGL-YGFGASAHLALQIARYQGAEVFAFTRSG---EHQELARELGAD 213 (329)
T ss_pred HhhCCCCCCEEEE-ECCcHHHHHHHHHHHHCCCeEEEEcCCh---HHHHHHHHhCCc
Confidence 4455666656555 4578888888889999998766654443 566666778874
No 221
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=55.40 E-value=78 Score=27.45 Aligned_cols=55 Identities=31% Similarity=0.331 Sum_probs=37.8
Q ss_pred HHHcCCCCCCCeEEEee-CCC---hHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCC
Q 020805 60 AEAKGLITPGESVLIEP-TSG---NTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGA 117 (321)
Q Consensus 60 a~~~g~~~~g~~~vv~~-SsG---N~g~AlA~aa~~~G~~~~ivvp~~~~-~~~~~~~~~~Ga 117 (321)
|+.-|... +.+|++ |+| .+.+|||.||++-|=+.+-++|+..+ ..-.+.|..+|.
T Consensus 35 AlAAG~nA---kliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~ 94 (218)
T PF07279_consen 35 ALAAGWNA---KLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGL 94 (218)
T ss_pred HHhccccc---eEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccc
Confidence 44455422 445544 554 36799999999999999999999765 345556666665
No 222
>PRK05876 short chain dehydrogenase; Provisional
Probab=55.39 E-value=93 Score=27.57 Aligned_cols=72 Identities=14% Similarity=0.051 Sum_probs=43.3
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeCCCC-ChhHHHHHHHHHHHh
Q 020805 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTDPAK-GMKGAVQKAEEILAK 141 (321)
Q Consensus 70 ~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~-~~~~~~~~~~Ga~v~~~~~~~-~~~~~~~~a~~~~~~ 141 (321)
...+||..+|.-|.++|..-...|.+++++...... ....+.++..|.++..+..+- +.++..+...+..++
T Consensus 7 k~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 80 (275)
T PRK05876 7 RGAVITGGASGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAEGFDVHGVMCDVRHREEVTHLADEAFRL 80 (275)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 367888888999999999988899986665433211 112334556687776655432 233344444444443
No 223
>PRK12938 acetyacetyl-CoA reductase; Provisional
Probab=55.35 E-value=1.2e+02 Score=26.04 Aligned_cols=54 Identities=7% Similarity=0.164 Sum_probs=37.5
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC--HHHHHHHHHcCCEEEEeCC
Q 020805 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS--LERRIILRAFGAELVLTDP 124 (321)
Q Consensus 71 ~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~--~~~~~~~~~~Ga~v~~~~~ 124 (321)
..+|+..+|.-|.++|......|.+.+++...... ....+.++..|.+++....
T Consensus 5 ~~lVtG~s~giG~~~a~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 60 (246)
T PRK12938 5 IAYVTGGMGGIGTSICQRLHKDGFKVVAGCGPNSPRRVKWLEDQKALGFDFIASEG 60 (246)
T ss_pred EEEEECCCChHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHhcCCcEEEEEc
Confidence 56888899999999999998999887665433221 2234455667888775543
No 224
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=55.14 E-value=98 Score=28.22 Aligned_cols=50 Identities=24% Similarity=0.245 Sum_probs=33.7
Q ss_pred CCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE
Q 020805 66 ITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAE 118 (321)
Q Consensus 66 ~~~g~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~ 118 (321)
+.+|...+|. .+|-.|.+++..|+.+|.+.++++ ..++.+.+.++.+|++
T Consensus 159 ~~~g~~vlI~-~~g~vg~~a~~la~~~G~~~v~~~--~~~~~~~~~~~~~g~~ 208 (340)
T TIGR00692 159 PISGKSVLVT-GAGPIGLMAIAVAKASGAYPVIVS--DPNEYRLELAKKMGAT 208 (340)
T ss_pred CCCCCEEEEE-CCCHHHHHHHHHHHHcCCcEEEEE--CCCHHHHHHHHHhCCc
Confidence 3455565664 457788888888888888744444 3356777777777774
No 225
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=55.11 E-value=1.1e+02 Score=33.07 Aligned_cols=32 Identities=13% Similarity=0.009 Sum_probs=28.4
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecC
Q 020805 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPA 102 (321)
Q Consensus 71 ~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~ 102 (321)
..|+.-.+|..|.+.|+..++.|++++||=..
T Consensus 431 ~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~ 462 (1006)
T PRK12775 431 GKVAICGSGPAGLAAAADLVKYGVDVTVYEAL 462 (1006)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCcEEEEecC
Confidence 46888899999999999999999999999543
No 226
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=55.07 E-value=1.5e+02 Score=26.23 Aligned_cols=53 Identities=28% Similarity=0.383 Sum_probs=35.0
Q ss_pred HcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCe-EEEEecCCCCHHHHHHHHHcCCE
Q 020805 62 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYR-LIITMPASMSLERRIILRAFGAE 118 (321)
Q Consensus 62 ~~g~~~~g~~~vv~~SsGN~g~AlA~aa~~~G~~-~~ivvp~~~~~~~~~~~~~~Ga~ 118 (321)
+...+++|...+|. .+|-.|.+++..|+.+|++ .+++ .. .+.+.+.++.+|++
T Consensus 123 ~~~~~~~~~~vlI~-g~g~vg~~~~~la~~~g~~~v~~~-~~--~~~~~~~~~~~g~~ 176 (312)
T cd08269 123 RRGWIRAGKTVAVI-GAGFIGLLFLQLAAAAGARRVIAI-DR--RPARLALARELGAT 176 (312)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCcEEEEE-CC--CHHHHHHHHHhCCc
Confidence 34555666566666 4677888888889999988 4443 22 24566677777763
No 227
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=55.02 E-value=35 Score=29.40 Aligned_cols=48 Identities=23% Similarity=0.249 Sum_probs=30.0
Q ss_pred chHHHHHhhhCCCCCEEE-EecCCchhHHHHHHHHHhcCCCcEEEEEecCC
Q 020805 163 TTGPELWKGSGGRIDALV-SGIGTGGTITGAGKFLKEKNPNIKLYGIEPTE 212 (321)
Q Consensus 163 ~~~~Ei~~ql~~~~d~vv-~p~G~Gg~~aGi~~~~k~~~~~~~vigv~~~~ 212 (321)
....||+-++ +||.|+ +.+-.||.+.=.+.-++..+++.+|+||+-.-
T Consensus 22 ~~~qeli~~~--kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdi 70 (206)
T PF04989_consen 22 VAYQELIWEL--KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDI 70 (206)
T ss_dssp HHHHHHHHHH----SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-G
T ss_pred HHHHHHHHHh--CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCc
Confidence 4556888887 689888 66667887765556666677889999999743
No 228
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=55.02 E-value=1.4e+02 Score=26.68 Aligned_cols=81 Identities=14% Similarity=0.058 Sum_probs=44.1
Q ss_pred EEEEeCCCCCCC-chhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC-----HHH
Q 020805 35 IAAKLEMMEPCS-SVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-----LER 108 (321)
Q Consensus 35 v~~K~E~~~ptG-S~K~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~-----~~~ 108 (321)
|.+..|.-.-.| +|=.|+.. +.....++|. .-.+++-..++.. .-.-+..|+++..+ |+... ..-
T Consensus 2 i~ir~Da~~~iG~GHv~Rcl~-LA~~l~~~g~----~v~f~~~~~~~~~---~~~i~~~g~~v~~~-~~~~~~~~d~~~~ 72 (279)
T TIGR03590 2 ILFRADASSEIGLGHVMRCLT-LARALHAQGA----EVAFACKPLPGDL---IDLLLSAGFPVYEL-PDESSRYDDALEL 72 (279)
T ss_pred EEEEecCCccccccHHHHHHH-HHHHHHHCCC----EEEEEeCCCCHHH---HHHHHHcCCeEEEe-cCCCchhhhHHHH
Confidence 556666665555 55566543 3333345554 1334433333332 22446788886654 44321 134
Q ss_pred HHHHHHcCCEEEEeCC
Q 020805 109 RIILRAFGAELVLTDP 124 (321)
Q Consensus 109 ~~~~~~~Ga~v~~~~~ 124 (321)
.+.++..+.++++++.
T Consensus 73 ~~~l~~~~~d~vV~D~ 88 (279)
T TIGR03590 73 INLLEEEKFDILIVDH 88 (279)
T ss_pred HHHHHhcCCCEEEEcC
Confidence 5667777888988886
No 229
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=54.98 E-value=84 Score=28.58 Aligned_cols=53 Identities=23% Similarity=0.276 Sum_probs=36.5
Q ss_pred CCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEE
Q 020805 64 GLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAEL 119 (321)
Q Consensus 64 g~~~~g~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v 119 (321)
..+.+|...+|. .+|..|.+++..|+.+|+..++++ ...+.+...++.+|+.+
T Consensus 163 ~~~~~~~~vlI~-g~g~vg~~~~~~a~~~g~~~v~~~--~~~~~~~~~~~~~g~~~ 215 (344)
T cd08284 163 AQVRPGDTVAVI-GCGPVGLCAVLSAQVLGAARVFAV--DPVPERLERAAALGAEP 215 (344)
T ss_pred cCCccCCEEEEE-CCcHHHHHHHHHHHHcCCceEEEE--cCCHHHHHHHHHhCCeE
Confidence 345556565555 578999999999999998434444 33456677778888764
No 230
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=54.84 E-value=88 Score=29.50 Aligned_cols=89 Identities=18% Similarity=0.236 Sum_probs=40.8
Q ss_pred eEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCC--hhHHHHHHHHHHHhCC-CeEEcCCC-CCCcchhhhhhchHHHHHh
Q 020805 95 RLIITMPASMSLERRIILRAFGAELVLTDPAKG--MKGAVQKAEEILAKTP-NAYMLQQF-ENPANPKIHYETTGPELWK 170 (321)
Q Consensus 95 ~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~--~~~~~~~a~~~~~~~~-~~~~~~~~-~~~~~~~~g~~~~~~Ei~~ 170 (321)
|..++.-.+.-..--+.++.+|-++.++.+... .....+...+..++.+ .....+.. .||.. -...-+.++++
T Consensus 4 p~~i~fG~g~l~~l~~~~~~~g~r~livt~~~~~~~~g~~~~v~~~L~~~~~~~~~~~~v~~~p~~---~~v~~~~~~~~ 80 (380)
T cd08185 4 PTKIVFGAGKLNELGEEALKPGKKALIVTGNGSSKKTGYLDRVIELLKQAGVEVVVFDKVEPNPTT---TTVMEGAALAR 80 (380)
T ss_pred CCeEEECcCHHHHHHHHHHhcCCeEEEEeCCCchhhccHHHHHHHHHHHcCCeEEEeCCccCCCCH---HHHHHHHHHHH
Confidence 445555555444444556667777776664322 1223334444434332 12222221 13322 11112223344
Q ss_pred hhCCCCCEEEEecCCchhH
Q 020805 171 GSGGRIDALVSGIGTGGTI 189 (321)
Q Consensus 171 ql~~~~d~vv~p~G~Gg~~ 189 (321)
+ .++| +|+++|+|+.+
T Consensus 81 ~--~~~D-~IiavGGGS~i 96 (380)
T cd08185 81 E--EGCD-FVVGLGGGSSM 96 (380)
T ss_pred H--cCCC-EEEEeCCccHH
Confidence 4 3578 67788887765
No 231
>PLN02918 pyridoxine (pyridoxamine) 5'-phosphate oxidase
Probab=54.82 E-value=94 Score=30.99 Aligned_cols=49 Identities=18% Similarity=0.177 Sum_probs=31.9
Q ss_pred eEEEeeCCChHH---HHHHHHHHHcCCeEEEEecCCCCHH----HHHHHHHcCCEE
Q 020805 71 SVLIEPTSGNTG---IGLAFMAAAKQYRLIITMPASMSLE----RRIILRAFGAEL 119 (321)
Q Consensus 71 ~~vv~~SsGN~g---~AlA~aa~~~G~~~~ivvp~~~~~~----~~~~~~~~Ga~v 119 (321)
+.+|.+..||.| ..+|......|++++|++|...... ..++++.+|..+
T Consensus 137 ~VlVlcGpGNNGGDGLVaAR~L~~~G~~V~V~~~~~~~~~~~~~~~~~~~~~gi~~ 192 (544)
T PLN02918 137 RVLAICGPGNNGGDGLVAARHLHHFGYKPFVCYPKRTAKPLYTGLVTQLESLSVPF 192 (544)
T ss_pred EEEEEECCCcCHHHHHHHHHHHHHCCCceEEEEcCCCCcHHHHHHHHHHHHcCCCe
Confidence 556777777655 4455556667999999998754332 345667777654
No 232
>PRK08303 short chain dehydrogenase; Provisional
Probab=54.65 E-value=1.1e+02 Score=27.83 Aligned_cols=71 Identities=15% Similarity=0.090 Sum_probs=43.8
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCC-----------CHHHHHHHHHcCCEEEEeCCC-CChhHHHHHHHHH
Q 020805 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM-----------SLERRIILRAFGAELVLTDPA-KGMKGAVQKAEEI 138 (321)
Q Consensus 71 ~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~-----------~~~~~~~~~~~Ga~v~~~~~~-~~~~~~~~~a~~~ 138 (321)
..+|+..++--|.++|..-...|.+++++-.... -....+.++..|.+++.+..+ .+.++..+...+.
T Consensus 10 ~~lITGgs~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~~~~ 89 (305)
T PRK08303 10 VALVAGATRGAGRGIAVELGAAGATVYVTGRSTRARRSEYDRPETIEETAELVTAAGGRGIAVQVDHLVPEQVRALVERI 89 (305)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEecccccccccccccchHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHH
Confidence 6677887788888888888889998777654321 112234566678776655433 2334455555555
Q ss_pred HHh
Q 020805 139 LAK 141 (321)
Q Consensus 139 ~~~ 141 (321)
.++
T Consensus 90 ~~~ 92 (305)
T PRK08303 90 DRE 92 (305)
T ss_pred HHH
Confidence 444
No 233
>PRK14031 glutamate dehydrogenase; Provisional
Probab=54.54 E-value=60 Score=31.50 Aligned_cols=52 Identities=10% Similarity=-0.096 Sum_probs=40.9
Q ss_pred hHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEec
Q 020805 50 DRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMP 101 (321)
Q Consensus 50 ~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp 101 (321)
-||..+.+..+.+..-....+.+|+.-..||-|..+|.....+|.+++++.+
T Consensus 208 g~Gv~~~~~~~~~~~g~~l~g~rVaVQGfGNVG~~aA~~L~e~GAkVVaVSD 259 (444)
T PRK14031 208 GYGNIYFLMEMLKTKGTDLKGKVCLVSGSGNVAQYTAEKVLELGGKVVTMSD 259 (444)
T ss_pred HHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEC
Confidence 4678888877765432344457888899999999999999999999998877
No 234
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=54.44 E-value=91 Score=26.96 Aligned_cols=55 Identities=15% Similarity=0.113 Sum_probs=37.0
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeCC
Q 020805 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTDP 124 (321)
Q Consensus 70 ~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~-~~~~~~~~~~Ga~v~~~~~ 124 (321)
...+|+..+|.-|.++|......|.+++++-..... ..-...++..|.++..+..
T Consensus 12 k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 67 (256)
T PRK06124 12 QVALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAGGAAEALAF 67 (256)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEc
Confidence 467888888999999999888889987776554211 1223345566766665543
No 235
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=54.36 E-value=74 Score=32.39 Aligned_cols=78 Identities=22% Similarity=0.201 Sum_probs=50.8
Q ss_pred CchhhHHHHHHHH-HHHHcCC------CCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCC---------C----
Q 020805 46 SSVKDRIGYSMIS-DAEAKGL------ITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM---------S---- 105 (321)
Q Consensus 46 GS~K~R~a~~~l~-~a~~~g~------~~~g~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~---------~---- 105 (321)
++.-+|.+.-.+. .+.+.|. ..+.++.|+.-.+|-.|.+.|+..++.|++++||-.... +
T Consensus 279 ~~v~i~~l~r~~~d~~~~~~~~~~~~~~~~~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~gip~~~l 358 (639)
T PRK12809 279 GAVSIGNLERYITDTALAMGWRPDVSKVVPRSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIPPFKL 358 (639)
T ss_pred CCcChhHHHHHHHHHHHHhCCCCCCCcccCCCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeeccCCcccC
Confidence 3555565544333 3444332 112235688899999999999999999999988854431 1
Q ss_pred -----HHHHHHHHHcCCEEEEeC
Q 020805 106 -----LERRIILRAFGAELVLTD 123 (321)
Q Consensus 106 -----~~~~~~~~~~Ga~v~~~~ 123 (321)
...++.++.+|.+++.-.
T Consensus 359 ~~~~~~~~~~~~~~~Gv~~~~~~ 381 (639)
T PRK12809 359 DKTVLSQRREIFTAMGIDFHLNC 381 (639)
T ss_pred CHHHHHHHHHHHHHCCeEEEcCC
Confidence 134667788898876543
No 236
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=54.32 E-value=1.3e+02 Score=26.10 Aligned_cols=55 Identities=15% Similarity=0.178 Sum_probs=38.7
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC--HHHHHHHHHcCCEEEEeCC
Q 020805 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS--LERRIILRAFGAELVLTDP 124 (321)
Q Consensus 70 ~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~--~~~~~~~~~~Ga~v~~~~~ 124 (321)
...+|+..+|.-|.++|......|.++++......+ ....+.++..|.++..+..
T Consensus 8 k~~lItGa~~gIG~~ia~~l~~~G~~vvi~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 64 (261)
T PRK08936 8 KVVVITGGSTGLGRAMAVRFGKEKAKVVINYRSDEEEANDVAEEIKKAGGEAIAVKG 64 (261)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcCCeEEEEEe
Confidence 367888888999999999999999987776554332 2223455666888765543
No 237
>cd01455 vWA_F11C1-5a_type Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=54.25 E-value=39 Score=28.71 Aligned_cols=35 Identities=20% Similarity=0.157 Sum_probs=26.1
Q ss_pred eEecchHHHHHHHHHHHh-cCCCCCCEEEEEecCCCC
Q 020805 268 FVGISSGGAAAAAIEIAK-RPENAGKLIVVCSQFACI 303 (321)
Q Consensus 268 ~~~pss~~a~aa~~~~~~-~~~~~~~~vv~i~tgg~~ 303 (321)
++++.|+-|+.-+++.++ .. ...++||+++|+|+-
T Consensus 88 ~ag~~TadAi~~av~rl~~~~-~a~~kvvILLTDG~n 123 (191)
T cd01455 88 WSGDHTVEATEFAIKELAAKE-DFDEAIVIVLSDANL 123 (191)
T ss_pred ccCccHHHHHHHHHHHHHhcC-cCCCcEEEEEeCCCc
Confidence 466788888888887775 43 356789999999753
No 238
>PRK12744 short chain dehydrogenase; Provisional
Probab=54.00 E-value=95 Score=26.93 Aligned_cols=70 Identities=21% Similarity=0.079 Sum_probs=42.8
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCC--CC---HHHHHHHHHcCCEEEEeCCCC-ChhHHHHHHHHHHH
Q 020805 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPAS--MS---LERRIILRAFGAELVLTDPAK-GMKGAVQKAEEILA 140 (321)
Q Consensus 71 ~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~--~~---~~~~~~~~~~Ga~v~~~~~~~-~~~~~~~~a~~~~~ 140 (321)
..+|+..+|.-|.++|..-...|.+++++.... .. ....+.++..+.++..+..+. +.++..+...+..+
T Consensus 10 ~vlItGa~~gIG~~~a~~l~~~G~~vv~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 85 (257)
T PRK12744 10 VVLIAGGAKNLGGLIARDLAAQGAKAVAIHYNSAASKADAEETVAAVKAAGAKAVAFQADLTTAAAVEKLFDDAKA 85 (257)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCcEEEEecCCccchHHHHHHHHHHHHhCCcEEEEecCcCCHHHHHHHHHHHHH
Confidence 678888888899999998888899977665322 11 122344556687776655432 23334444444433
No 239
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=53.91 E-value=1e+02 Score=26.39 Aligned_cols=56 Identities=14% Similarity=0.119 Sum_probs=38.7
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeCCC
Q 020805 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTDPA 125 (321)
Q Consensus 70 ~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~-~~~~~~~~~~Ga~v~~~~~~ 125 (321)
...+|+..+|.-|.+++......|.+++++.....+ ....+.++..+.++..+..+
T Consensus 7 ~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D 63 (251)
T PRK12826 7 RVALVTGAARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAGGKARARQVD 63 (251)
T ss_pred CEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECC
Confidence 367888889999999999988889987776554221 22334556677777666543
No 240
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=53.85 E-value=1.1e+02 Score=26.34 Aligned_cols=56 Identities=11% Similarity=0.116 Sum_probs=38.0
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC--HHHHHHHHHcCCEEEEeCCC
Q 020805 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS--LERRIILRAFGAELVLTDPA 125 (321)
Q Consensus 70 ~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~--~~~~~~~~~~Ga~v~~~~~~ 125 (321)
...+|+..+|--|.++|......|..+++....... +...+.++..|.++..+..+
T Consensus 7 ~~~lItG~s~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D 64 (247)
T PRK12935 7 KVAIVTGGAKGIGKAITVALAQEGAKVVINYNSSKEAAENLVNELGKEGHDVYAVQAD 64 (247)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCEEEEEcCCcHHHHHHHHHHHHhcCCeEEEEECC
Confidence 367888888999999999888889887755433211 12234556678888777654
No 241
>PRK05866 short chain dehydrogenase; Provisional
Probab=53.63 E-value=91 Score=27.99 Aligned_cols=71 Identities=8% Similarity=0.009 Sum_probs=42.5
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeCCCC-ChhHHHHHHHHHHHh
Q 020805 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTDPAK-GMKGAVQKAEEILAK 141 (321)
Q Consensus 71 ~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~-~~~~~~~~~~Ga~v~~~~~~~-~~~~~~~~a~~~~~~ 141 (321)
..+|+..+|.-|.++|......|.+++++...... ....+.+...|.++..+..+- +.++..+...+..++
T Consensus 42 ~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~ 114 (293)
T PRK05866 42 RILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVADRITRAGGDAMAVPCDLSDLDAVDALVADVEKR 114 (293)
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 56888888999999999988889988777554211 122234445576666554432 223333334444333
No 242
>PRK06194 hypothetical protein; Provisional
Probab=53.46 E-value=1.2e+02 Score=26.82 Aligned_cols=55 Identities=22% Similarity=0.218 Sum_probs=37.1
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeCCC
Q 020805 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTDPA 125 (321)
Q Consensus 71 ~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~-~~~~~~~~~~Ga~v~~~~~~ 125 (321)
..+|+..+|.-|.++|......|.+++++-..... ....+.+...|.++..+..+
T Consensus 8 ~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D 63 (287)
T PRK06194 8 VAVITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQGAEVLGVRTD 63 (287)
T ss_pred EEEEeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCCeEEEEECC
Confidence 67888888999999999888889987666432211 22233445557788766654
No 243
>PRK07890 short chain dehydrogenase; Provisional
Probab=53.31 E-value=96 Score=26.76 Aligned_cols=56 Identities=14% Similarity=0.133 Sum_probs=37.3
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeCCC
Q 020805 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTDPA 125 (321)
Q Consensus 70 ~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~-~~~~~~~~~~Ga~v~~~~~~ 125 (321)
+..+|+..+|.-|.++|......|.+++++-..... +.-...++..|.++..+..+
T Consensus 6 k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D 62 (258)
T PRK07890 6 KVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDLGRRALAVPTD 62 (258)
T ss_pred CEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEecC
Confidence 467888899999999999999999987766543211 11223344557766655543
No 244
>PRK07035 short chain dehydrogenase; Provisional
Probab=53.26 E-value=1.1e+02 Score=26.37 Aligned_cols=70 Identities=14% Similarity=0.019 Sum_probs=42.5
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeCCCC-ChhHHHHHHHHHHH
Q 020805 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTDPAK-GMKGAVQKAEEILA 140 (321)
Q Consensus 71 ~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~-~~~~~~~~~~Ga~v~~~~~~~-~~~~~~~~a~~~~~ 140 (321)
..+|+..+|.-|.+++......|.+++++-..... ....+.+...|.++..+..+. +.++..+...+..+
T Consensus 10 ~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 81 (252)
T PRK07035 10 IALVTGASRGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVAAGGKAEALACHIGEMEQIDALFAHIRE 81 (252)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHH
Confidence 67888888999999999998899987776543211 122334455676666554332 22333344444443
No 245
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=53.25 E-value=94 Score=23.25 Aligned_cols=35 Identities=20% Similarity=0.187 Sum_probs=23.1
Q ss_pred CCCEEEEecCCchhHHHHHHHHHhcCCCcEEEEEe
Q 020805 175 RIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIE 209 (321)
Q Consensus 175 ~~d~vv~p~G~Gg~~aGi~~~~k~~~~~~~vigv~ 209 (321)
+.+.+++..+.-..-.-++..+|+++|..++++.-
T Consensus 62 ~a~~vv~~~~~d~~n~~~~~~~r~~~~~~~ii~~~ 96 (116)
T PF02254_consen 62 KADAVVILTDDDEENLLIALLARELNPDIRIIARV 96 (116)
T ss_dssp CESEEEEESSSHHHHHHHHHHHHHHTTTSEEEEEE
T ss_pred ccCEEEEccCCHHHHHHHHHHHHHHCCCCeEEEEE
Confidence 45677777776555555666777777777776543
No 246
>PF11760 CbiG_N: Cobalamin synthesis G N-terminal; InterPro: IPR021744 Members of this family are involved in cobalamin synthesis. The gene encoded by P72862 from SWISSPROT has been designated cbiH but in fact represents a fusion between cbiH and cbiG. As other multi-functional proteins involved in cobalamin biosynthesis catalyse adjacent steps in the pathway, including CysG, CobL (CbiET), CobIJ and CobA-HemD, it is therefore possible that CbiG catalyses a reaction step adjacent to CbiH. In the anaerobic pathway such a step could be the formation of a gamma lactone, which is thought to help to mediate the anaerobic ring contraction process []. Within the cobalamin synthesis pathway CbiG catalyses the both the opening of the lactone ring and the extrusion of the two-carbon fragment of cobalt-precorrin-5A from C-20 and its associated methyl group (deacylation) to give cobalt-precorrin-5B. The N-terminal of the enzyme is conserved in this family, and the C-terminal and the mid-sections are conserved independently in other families, CbiG_C and CbiG_mid, although the distinct function of each region is unclear. ; PDB: 3EEQ_B.
Probab=53.11 E-value=32 Score=25.04 Aligned_cols=48 Identities=17% Similarity=0.224 Sum_probs=30.8
Q ss_pred HHHhhhCCCCCEEEEecCCchhHHHHHHHHHhcCCCcEEEEEecCCCC
Q 020805 167 ELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESP 214 (321)
Q Consensus 167 Ei~~ql~~~~d~vv~p~G~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~ 214 (321)
|.+++.....|.++.-...|..+--++-.++....++-|+.|+..+.-
T Consensus 3 ~~~~~~~~~~d~~I~i~A~GivvR~iap~l~dK~~DPaVvvvde~g~~ 50 (84)
T PF11760_consen 3 DLLRELFRRYDAIIFIMAAGIVVRAIAPLLKDKDTDPAVVVVDEDGRF 50 (84)
T ss_dssp --HHHHCCC-SEEEEES-HHHHHHHHHHH---TTT--EEEEE-TT--E
T ss_pred hHHHHHHcCCCeEEEEeCcHHHHHHhChhhcccCCCCCEEEEeCCCCE
Confidence 345555567899999999999999999999988889999999988874
No 247
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=53.05 E-value=86 Score=27.73 Aligned_cols=95 Identities=13% Similarity=0.086 Sum_probs=49.5
Q ss_pred HHHHHHHHHHc--CCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEE---cCCCCCCcc
Q 020805 82 GIGLAFMAAAK--QYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYM---LQQFENPAN 156 (321)
Q Consensus 82 g~AlA~aa~~~--G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~ 156 (321)
|..+.++++.+ |.+..-+-..+.-..-++.....|.+|.++++.. ....+.++.+.+++ +.-. -++|.++.
T Consensus 69 G~gvv~~~~~~~~~~~~~Rv~G~dl~~~ll~~~~~~~~~v~llG~~~--~v~~~a~~~l~~~y-~l~i~g~~~Gyf~~~- 144 (243)
T PRK03692 69 GISVVRSIRKKYPQAQVSRVAGADLWEALMARAGKEGTPVFLVGGKP--EVLAQTEAKLRTQW-NVNIVGSQDGYFTPE- 144 (243)
T ss_pred CHHHHHHHHHhcCCCCCCeeChHHHHHHHHHHHHhcCCeEEEECCCH--HHHHHHHHHHHHHh-CCEEEEEeCCCCCHH-
Confidence 35677777766 4331111111112233445567789999999642 33444455555555 3322 23333221
Q ss_pred hhhhhhchHHHHHhhhC-CCCCEEEEecCCch
Q 020805 157 PKIHYETTGPELWKGSG-GRIDALVSGIGTGG 187 (321)
Q Consensus 157 ~~~g~~~~~~Ei~~ql~-~~~d~vv~p~G~Gg 187 (321)
+ . .+|.+++. .++|.|+++.|.-=
T Consensus 145 --e-~----~~i~~~I~~s~~dil~VglG~Pk 169 (243)
T PRK03692 145 --Q-R----QALFERIHASGAKIVTVAMGSPK 169 (243)
T ss_pred --H-H----HHHHHHHHhcCCCEEEEECCCcH
Confidence 1 1 23444442 36999999999854
No 248
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=52.99 E-value=1.1e+02 Score=27.12 Aligned_cols=54 Identities=26% Similarity=0.369 Sum_probs=35.7
Q ss_pred CCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 020805 64 GLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 120 (321)
Q Consensus 64 g~~~~g~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~ 120 (321)
+.+.+|...+|...+|..|.++...|+..|.+.+.+.+. +.+.+.++.+|++-+
T Consensus 138 ~~~~~g~~vlV~ga~g~~g~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~~~ 191 (320)
T cd08243 138 LGLQPGDTLLIRGGTSSVGLAALKLAKALGATVTATTRS---PERAALLKELGADEV 191 (320)
T ss_pred cCCCCCCEEEEEcCCChHHHHHHHHHHHcCCEEEEEeCC---HHHHHHHHhcCCcEE
Confidence 335556565565556899999999999999885554333 355666677776433
No 249
>KOG1177 consensus Long chain fatty acid acyl-CoA ligase [Lipid transport and metabolism]
Probab=52.90 E-value=1.7e+02 Score=28.89 Aligned_cols=109 Identities=17% Similarity=0.115 Sum_probs=73.7
Q ss_pred eEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHH
Q 020805 34 RIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILR 113 (321)
Q Consensus 34 ~v~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~ 113 (321)
.+-++.|....|+|-=.-.+..+.+-.+..| +++|.+.-+.++..-+=.-..++|++.|+=.+-+=|...+.+..--++
T Consensus 68 a~Vf~~eg~R~Tf~~~~~ev~slAaGll~lG-L~kGDrVgvwgpN~~~w~l~~lA~A~AG~v~v~~NP~Yq~~elr~~L~ 146 (596)
T KOG1177|consen 68 AAVFDHEGIRLTFSEFVSEVESLAAGLLSLG-LKKGDRVGVWGPNSYEWVLCQLACARAGLVLVNLNPAYQSEELRYVLK 146 (596)
T ss_pred EEEEeeccchhhHHHHHHHHHHHHhhHHhhc-CCCCCEEEEecCChHHHHHHHHHHHHhceEEeccCcccccHHHHHHHh
Confidence 4557888887777544445555666666666 455645445555333446678899999998888888888888888899
Q ss_pred HcCCEEEEeCCCCC----hhHHHHHHHHHHHhCC
Q 020805 114 AFGAELVLTDPAKG----MKGAVQKAEEILAKTP 143 (321)
Q Consensus 114 ~~Ga~v~~~~~~~~----~~~~~~~a~~~~~~~~ 143 (321)
..|+.+.+.++... +.-..+.+-|+.+..+
T Consensus 147 k~~~k~l~~p~~~k~~ny~~~l~~icPEv~~~~~ 180 (596)
T KOG1177|consen 147 KVGCKALFAPPQFKTQNYYETLLEICPEVMRGDP 180 (596)
T ss_pred hcCeEEEEccchhhhchHHHHHHHhhHHhhcCCC
Confidence 99999999986421 2334455555555444
No 250
>PLN02527 aspartate carbamoyltransferase
Probab=52.85 E-value=87 Score=28.72 Aligned_cols=53 Identities=15% Similarity=0.069 Sum_probs=37.0
Q ss_pred eEEEeeCCC---hHHHHHHHHHHHc-CCeEEEEecCCC--CHHHHHHHHHcCCEEEEeC
Q 020805 71 SVLIEPTSG---NTGIGLAFMAAAK-QYRLIITMPASM--SLERRIILRAFGAELVLTD 123 (321)
Q Consensus 71 ~~vv~~SsG---N~g~AlA~aa~~~-G~~~~ivvp~~~--~~~~~~~~~~~Ga~v~~~~ 123 (321)
.+|+-...+ |.+.+++.+++++ |+.++++.|+.. +....+.++..|.++..+.
T Consensus 152 ~kva~vGD~~~~rv~~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~ 210 (306)
T PLN02527 152 IKVGLVGDLANGRTVRSLAYLLAKYEDVKIYFVAPDVVKMKDDIKDYLTSKGVEWEESS 210 (306)
T ss_pred CEEEEECCCCCChhHHHHHHHHHhcCCCEEEEECCCccCCCHHHHHHHHHcCCEEEEEc
Confidence 345544443 5789999887776 899999999863 4455556666788777665
No 251
>PRK05867 short chain dehydrogenase; Provisional
Probab=52.81 E-value=1e+02 Score=26.59 Aligned_cols=71 Identities=13% Similarity=0.045 Sum_probs=42.1
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeCCCC-ChhHHHHHHHHHHHh
Q 020805 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTDPAK-GMKGAVQKAEEILAK 141 (321)
Q Consensus 71 ~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~-~~~~~~~~~~Ga~v~~~~~~~-~~~~~~~~a~~~~~~ 141 (321)
..+|+..+|.-|.++|..-...|.+++++-..... +...+.++..|.++..+..+. +.++..+...+..++
T Consensus 11 ~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 83 (253)
T PRK05867 11 RALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSGGKVVPVCCDVSQHQQVTSMLDQVTAE 83 (253)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHH
Confidence 67888888889999999988889987665432211 122334555677776554332 233334444444433
No 252
>PRK07454 short chain dehydrogenase; Provisional
Probab=52.78 E-value=97 Score=26.48 Aligned_cols=70 Identities=17% Similarity=0.133 Sum_probs=42.4
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeCCCC-ChhHHHHHHHHHHH
Q 020805 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTDPAK-GMKGAVQKAEEILA 140 (321)
Q Consensus 71 ~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~-~~~~~~~~~~Ga~v~~~~~~~-~~~~~~~~a~~~~~ 140 (321)
..+|+.++|..|.++|......|.+++++...... ....+.++..+.++..+..+- +.++..+...+..+
T Consensus 8 ~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 79 (241)
T PRK07454 8 RALITGASSGIGKATALAFAKAGWDLALVARSQDALEALAAELRSTGVKAAAYSIDLSNPEAIAPGIAELLE 79 (241)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 56788888999999999999999987776543211 112233455666766554432 23333344444443
No 253
>PRK11891 aspartate carbamoyltransferase; Provisional
Probab=52.78 E-value=79 Score=30.52 Aligned_cols=53 Identities=15% Similarity=0.098 Sum_probs=38.1
Q ss_pred eEEEeeCC---ChHHHHHHHHHHHc-CCeEEEEecCCC--CHHHHHHHHHcCCEEEEeC
Q 020805 71 SVLIEPTS---GNTGIGLAFMAAAK-QYRLIITMPASM--SLERRIILRAFGAELVLTD 123 (321)
Q Consensus 71 ~~vv~~Ss---GN~g~AlA~aa~~~-G~~~~ivvp~~~--~~~~~~~~~~~Ga~v~~~~ 123 (321)
.+|+-... +|.+.+++.+++.+ |++++++.|+.. +...++.++..|..+..+.
T Consensus 242 ~kIa~vGD~~~~rv~~Sl~~~la~~~G~~v~l~~P~~~~~~~~~~~~~~~~G~~v~~~~ 300 (429)
T PRK11891 242 AHIALVGDLKYGRTVHSLVKLLALYRGLKFTLVSPPTLEMPAYIVEQISRNGHVIEQTD 300 (429)
T ss_pred CEEEEECcCCCChHHHHHHHHHHHhcCCEEEEECCCccccCHHHHHHHHhcCCeEEEEc
Confidence 34554444 58899999986654 999999999864 4455566677788887766
No 254
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=52.61 E-value=1.2e+02 Score=26.13 Aligned_cols=56 Identities=13% Similarity=0.165 Sum_probs=38.6
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCH-HHHHHHHHcCCEEEEeCCC
Q 020805 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSL-ERRIILRAFGAELVLTDPA 125 (321)
Q Consensus 70 ~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~-~~~~~~~~~Ga~v~~~~~~ 125 (321)
...+|+..+|..|.++|..-...|.+++++.....+. .....++..+.++..+..+
T Consensus 5 ~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D 61 (258)
T PRK12429 5 KVALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKAGGKAIGVAMD 61 (258)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcC
Confidence 3678888889999999999888899887776543322 2233455567777655543
No 255
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=52.58 E-value=78 Score=26.14 Aligned_cols=89 Identities=16% Similarity=0.168 Sum_probs=51.6
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEcCC
Q 020805 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQ 150 (321)
Q Consensus 71 ~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 150 (321)
+.++...-|+-|.++|..++.+|.+++|+ +..+.+..+....|-++.... + .+++ .+. ++.-
T Consensus 24 k~vvV~GYG~vG~g~A~~lr~~Ga~V~V~---e~DPi~alqA~~dGf~v~~~~------~-------a~~~-adi-~vta 85 (162)
T PF00670_consen 24 KRVVVIGYGKVGKGIARALRGLGARVTVT---EIDPIRALQAAMDGFEVMTLE------E-------ALRD-ADI-FVTA 85 (162)
T ss_dssp SEEEEE--SHHHHHHHHHHHHTT-EEEEE----SSHHHHHHHHHTT-EEE-HH------H-------HTTT--SE-EEE-
T ss_pred CEEEEeCCCcccHHHHHHHhhCCCEEEEE---ECChHHHHHhhhcCcEecCHH------H-------HHhh-CCE-EEEC
Confidence 56788899999999999999999888877 455666666666777764211 1 1122 233 3322
Q ss_pred CCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCc
Q 020805 151 FENPANPKIHYETTGPELWKGSGGRIDALVSGIGTG 186 (321)
Q Consensus 151 ~~~~~~~~~g~~~~~~Ei~~ql~~~~d~vv~p~G~G 186 (321)
-.+. ..+-.|.++|++ -+.|++.+|.-
T Consensus 86 TG~~-------~vi~~e~~~~mk--dgail~n~Gh~ 112 (162)
T PF00670_consen 86 TGNK-------DVITGEHFRQMK--DGAILANAGHF 112 (162)
T ss_dssp SSSS-------SSB-HHHHHHS---TTEEEEESSSS
T ss_pred CCCc-------cccCHHHHHHhc--CCeEEeccCcC
Confidence 1121 224567788873 47788877763
No 256
>PRK06701 short chain dehydrogenase; Provisional
Probab=52.25 E-value=1.6e+02 Score=26.29 Aligned_cols=55 Identities=16% Similarity=0.137 Sum_probs=39.1
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC--HHHHHHHHHcCCEEEEeCCC
Q 020805 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS--LERRIILRAFGAELVLTDPA 125 (321)
Q Consensus 71 ~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~--~~~~~~~~~~Ga~v~~~~~~ 125 (321)
..+|+..+|--|.++|......|.+++++...... ....+.++..|.++..+..+
T Consensus 48 ~iLItGasggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~D 104 (290)
T PRK06701 48 VALITGGDSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKEGVKCLLIPGD 104 (290)
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCeEEEEEcc
Confidence 67888888999999999988899998777554322 23344556678787666543
No 257
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=52.17 E-value=1.3e+02 Score=26.96 Aligned_cols=83 Identities=17% Similarity=0.105 Sum_probs=41.9
Q ss_pred hhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCh----HHH-HHHHHHHHcCCeEEEEe--cCCCCHHHHHHHHHcCCEEE
Q 020805 48 VKDRIGYSMISDAEAKGLITPGESVLIEPTSGN----TGI-GLAFMAAAKQYRLIITM--PASMSLERRIILRAFGAELV 120 (321)
Q Consensus 48 ~K~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN----~g~-AlA~aa~~~G~~~~ivv--p~~~~~~~~~~~~~~Ga~v~ 120 (321)
++....+.++...++.+.-. .++..+--| .|. .....|+..|++.+++. |...+....+.++.+|-+.+
T Consensus 76 ~t~~~~lel~~~~r~~~~~~----Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGlivpDLP~ee~~~~~~~~~~~gi~~I 151 (265)
T COG0159 76 VTLEDTLELVEEIRAKGVKV----PIVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLVPDLPPEESDELLKAAEKHGIDPI 151 (265)
T ss_pred CCHHHHHHHHHHHHhcCCCC----CEEEEEeccHHHHhhHHHHHHHHHHcCCCEEEeCCCChHHHHHHHHHHHHcCCcEE
Confidence 34455566666666554421 233333323 232 22335777777777764 33444455666677777766
Q ss_pred EeCCCCChhHHHHH
Q 020805 121 LTDPAKGMKGAVQK 134 (321)
Q Consensus 121 ~~~~~~~~~~~~~~ 134 (321)
+.-.+...+++.+.
T Consensus 152 ~lvaPtt~~~rl~~ 165 (265)
T COG0159 152 FLVAPTTPDERLKK 165 (265)
T ss_pred EEeCCCCCHHHHHH
Confidence 54333233344433
No 258
>PRK06500 short chain dehydrogenase; Provisional
Probab=52.02 E-value=1.4e+02 Score=25.46 Aligned_cols=52 Identities=17% Similarity=0.137 Sum_probs=35.8
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHH-HHHHHcCCEEEEeCC
Q 020805 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERR-IILRAFGAELVLTDP 124 (321)
Q Consensus 70 ~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~-~~~~~~Ga~v~~~~~ 124 (321)
...+|+..+|.-|.++|......|.+++++... ..+. +..+.+|.++..+..
T Consensus 7 k~vlItGasg~iG~~la~~l~~~g~~v~~~~r~---~~~~~~~~~~~~~~~~~~~~ 59 (249)
T PRK06500 7 KTALITGGTSGIGLETARQFLAEGARVAITGRD---PASLEAARAELGESALVIRA 59 (249)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEecCC---HHHHHHHHHHhCCceEEEEe
Confidence 367888888999999999998999987665432 2222 233456777765543
No 259
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=51.90 E-value=1.1e+02 Score=27.68 Aligned_cols=54 Identities=26% Similarity=0.297 Sum_probs=36.0
Q ss_pred CCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q 020805 64 GLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 121 (321)
Q Consensus 64 g~~~~g~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~ 121 (321)
..+.++...+|. ..|..|.+++..|+..|++.+++.+ +..+.+.++.+|++.++
T Consensus 158 ~~~~~~~~vlI~-g~g~iG~~~~~~a~~~G~~v~~~~~---~~~~~~~~~~~g~~~~~ 211 (330)
T cd08245 158 AGPRPGERVAVL-GIGGLGHLAVQYARAMGFETVAITR---SPDKRELARKLGADEVV 211 (330)
T ss_pred hCCCCCCEEEEE-CCCHHHHHHHHHHHHCCCEEEEEeC---CHHHHHHHHHhCCcEEe
Confidence 445666565665 5566899888889999988665543 34556666777765443
No 260
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=51.87 E-value=98 Score=27.39 Aligned_cols=33 Identities=27% Similarity=0.338 Sum_probs=21.9
Q ss_pred eEEEeeCCChHH---HHHHHHHHHcCCeEEEEecCC
Q 020805 71 SVLIEPTSGNTG---IGLAFMAAAKQYRLIITMPAS 103 (321)
Q Consensus 71 ~~vv~~SsGN~g---~AlA~aa~~~G~~~~ivvp~~ 103 (321)
+.+|.+..||.| .++|...+..|+++.+++++.
T Consensus 62 ~V~VlcG~GNNGGDGlv~AR~L~~~G~~V~v~~~~~ 97 (246)
T PLN03050 62 RVLLVCGPGNNGGDGLVAARHLAHFGYEVTVCYPKQ 97 (246)
T ss_pred eEEEEECCCCCchhHHHHHHHHHHCCCeEEEEEcCC
Confidence 556666666654 445555556799999998653
No 261
>PRK02610 histidinol-phosphate aminotransferase; Provisional
Probab=51.72 E-value=1.1e+02 Score=28.52 Aligned_cols=53 Identities=11% Similarity=0.009 Sum_probs=34.8
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCC
Q 020805 72 VLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 124 (321)
Q Consensus 72 ~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~ 124 (321)
.|+..+++..+..++..+....=+-.|++|.-+-..-...++.+|++++.++.
T Consensus 93 ~I~it~Ga~~al~~~~~~~~~~g~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~ 145 (374)
T PRK02610 93 NISVGNGSDELIRSLLIATCLGGEGSILVAEPTFSMYGILAQTLGIPVVRVGR 145 (374)
T ss_pred HEEEcCChHHHHHHHHHHHcCCCCCeEEEcCCChHHHHHHHHHcCCEEEEecC
Confidence 46666667777765555443332225666665555667788999999999874
No 262
>PLN02702 L-idonate 5-dehydrogenase
Probab=51.67 E-value=1.3e+02 Score=27.68 Aligned_cols=57 Identities=23% Similarity=0.307 Sum_probs=39.4
Q ss_pred HcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q 020805 62 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 121 (321)
Q Consensus 62 ~~g~~~~g~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~ 121 (321)
+...+.+|...+|. ..|..|.++...++.+|.+.++.+.. +..|.+.++.+|++...
T Consensus 175 ~~~~~~~g~~vlI~-g~g~vG~~~~~~a~~~G~~~v~~~~~--~~~~~~~~~~~g~~~~~ 231 (364)
T PLN02702 175 RRANIGPETNVLVM-GAGPIGLVTMLAARAFGAPRIVIVDV--DDERLSVAKQLGADEIV 231 (364)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEEECC--CHHHHHHHHHhCCCEEE
Confidence 34445666565555 57888888888899999876555543 36777777888876544
No 263
>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=51.64 E-value=1.4e+02 Score=28.54 Aligned_cols=71 Identities=13% Similarity=0.140 Sum_probs=44.8
Q ss_pred CCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHH
Q 020805 69 GESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILA 140 (321)
Q Consensus 69 g~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~ 140 (321)
+...+|+..+|.-|.++|......|.+++++-.....+...+....++.+.+.++-. +.++..+...+..+
T Consensus 210 g~~vlItGasggIG~~la~~l~~~Ga~vi~~~~~~~~~~l~~~~~~~~~~~~~~Dv~-~~~~~~~~~~~~~~ 280 (450)
T PRK08261 210 GKVALVTGAARGIGAAIAEVLARDGAHVVCLDVPAAGEALAAVANRVGGTALALDIT-APDAPARIAEHLAE 280 (450)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCccHHHHHHHHHHcCCeEEEEeCC-CHHHHHHHHHHHHH
Confidence 346788888899999999998899998777644333333334445677777777643 23333333444433
No 264
>PRK09257 aromatic amino acid aminotransferase; Provisional
Probab=51.61 E-value=2.1e+02 Score=26.83 Aligned_cols=82 Identities=10% Similarity=0.016 Sum_probs=46.2
Q ss_pred CCCCCCCchhhHHHHHHHHHHHHcCC--CCCCCe-EEEeeCCChHHHHHHHHHHH-cCCeEEEEecCCCCHHHHHHHHHc
Q 020805 40 EMMEPCSSVKDRIGYSMISDAEAKGL--ITPGES-VLIEPTSGNTGIGLAFMAAA-KQYRLIITMPASMSLERRIILRAF 115 (321)
Q Consensus 40 E~~~ptGS~K~R~a~~~l~~a~~~g~--~~~g~~-~vv~~SsGN~g~AlA~aa~~-~G~~~~ivvp~~~~~~~~~~~~~~ 115 (321)
.+..+.|....|-+..... .+.+. +.++ . .++..+++.+|..++..+-. ..=.-.|++|.-.-+.-...++.+
T Consensus 64 ~Y~~~~G~~~lR~aia~~~--~~~~~~~~~~~-~i~v~iT~Ga~~al~~~~~~l~~~~pGd~Vlv~~P~y~~~~~~~~~~ 140 (396)
T PRK09257 64 NYLPIEGLAAYRQAVQELL--FGADSPALAAG-RVATVQTPGGTGALRVGADFLKRAFPDAKVWVSDPTWPNHRAIFEAA 140 (396)
T ss_pred CcCCCCCCHHHHHHHHHHh--cCCCCcccccC-eEEEEecCCccHHHHHHHHHHHHhCCCCeEEECCCCcccHHHHHHHc
Confidence 3444567777776543322 22221 2332 2 13666777887777753222 122235666665545557788899
Q ss_pred CCEEEEeCC
Q 020805 116 GAELVLTDP 124 (321)
Q Consensus 116 Ga~v~~~~~ 124 (321)
|++++.++-
T Consensus 141 g~~~v~v~~ 149 (396)
T PRK09257 141 GLEVKTYPY 149 (396)
T ss_pred CCcEEEEec
Confidence 999998863
No 265
>PRK08192 aspartate carbamoyltransferase; Provisional
Probab=51.48 E-value=92 Score=29.03 Aligned_cols=54 Identities=15% Similarity=0.127 Sum_probs=40.2
Q ss_pred eEEEeeCC---ChHHHHHHHH-HHHcCCeEEEEecCCC--CHHHHHHHHHcCCEEEEeCC
Q 020805 71 SVLIEPTS---GNTGIGLAFM-AAAKQYRLIITMPASM--SLERRIILRAFGAELVLTDP 124 (321)
Q Consensus 71 ~~vv~~Ss---GN~g~AlA~a-a~~~G~~~~ivvp~~~--~~~~~~~~~~~Ga~v~~~~~ 124 (321)
.+|+-... +|.+.+++.+ ++.+|++++++.|+.. +...++.++..|.++..+..
T Consensus 160 ~kia~vGD~~~~rv~~Sl~~~l~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d 219 (338)
T PRK08192 160 MHIAMVGDLKFGRTVHSLSRLLCMYKNVSFTLVSPKELAMPDYVISDIENAGHKITITDQ 219 (338)
T ss_pred CEEEEECcCCCCchHHHHHHHHHHhcCCEEEEECCccccCCHHHHHHHHHcCCeEEEEcC
Confidence 44555555 6889999876 6677999999999864 55556677778988887763
No 266
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=51.35 E-value=1.5e+02 Score=25.38 Aligned_cols=55 Identities=22% Similarity=0.262 Sum_probs=35.7
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHH-HHHHHHcCCEEEEeCCC
Q 020805 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLER-RIILRAFGAELVLTDPA 125 (321)
Q Consensus 70 ~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~-~~~~~~~Ga~v~~~~~~ 125 (321)
+..+|+.++|.-|.+++......|.+++++......... ...++. +.++..+..+
T Consensus 6 ~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D 61 (251)
T PRK07231 6 KVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEAAERVAAEILA-GGRAIAVAAD 61 (251)
T ss_pred cEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc-CCeEEEEECC
Confidence 367888899999999999988899997666554322111 222232 5566555543
No 267
>PRK13376 pyrB bifunctional aspartate carbamoyltransferase catalytic subunit/aspartate carbamoyltransferase regulatory subunit; Provisional
Probab=51.29 E-value=80 Score=31.35 Aligned_cols=53 Identities=9% Similarity=-0.020 Sum_probs=41.7
Q ss_pred eEEEeeCC---ChHHHHHHHHHHHcC-CeEEEEecCCC--CHHHHHHHHHcCCEEEEeC
Q 020805 71 SVLIEPTS---GNTGIGLAFMAAAKQ-YRLIITMPASM--SLERRIILRAFGAELVLTD 123 (321)
Q Consensus 71 ~~vv~~Ss---GN~g~AlA~aa~~~G-~~~~ivvp~~~--~~~~~~~~~~~Ga~v~~~~ 123 (321)
.+|+-... +|.+.|++.+++++| ++++++.|+.. ++..++.++..|+.+..+.
T Consensus 175 lkVa~vGD~~~~rva~Sl~~~l~~~g~~~v~l~~P~~~~~p~~~~~~a~~~G~~v~i~~ 233 (525)
T PRK13376 175 IHIALVGDLLHGRTVHSKVNGLKIFKNVKVDLIAPEELAMPEHYVEKMKKNGFEVRIFS 233 (525)
T ss_pred CEEEEECCCCCCcHHHHHHHHHHhcCCcEEEEECCccccCCHHHHHHHHHcCCeEEEEc
Confidence 44555555 689999999999998 99999999864 5555677777899988776
No 268
>PRK08265 short chain dehydrogenase; Provisional
Probab=51.15 E-value=1.5e+02 Score=25.86 Aligned_cols=70 Identities=10% Similarity=0.073 Sum_probs=41.1
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCC-hhHHHHHHHHHHHh
Q 020805 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKG-MKGAVQKAEEILAK 141 (321)
Q Consensus 70 ~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~-~~~~~~~a~~~~~~ 141 (321)
...+|+..+|--|.++|......|.+++++-... ....+..+.++.++..+..+.. .++..+...+..++
T Consensus 7 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~--~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 77 (261)
T PRK08265 7 KVAIVTGGATLIGAAVARALVAAGARVAIVDIDA--DNGAAVAASLGERARFIATDITDDAAIERAVATVVAR 77 (261)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH--HHHHHHHHHhCCeeEEEEecCCCHHHHHHHHHHHHHH
Confidence 3678888888899999999888999776664322 1122233445766665543322 23333334444333
No 269
>PRK07791 short chain dehydrogenase; Provisional
Probab=50.98 E-value=1.3e+02 Score=26.74 Aligned_cols=72 Identities=18% Similarity=0.175 Sum_probs=44.2
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCC---------C-CHHHHHHHHHcCCEEEEeCCCC-ChhHHHHHHHHH
Q 020805 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPAS---------M-SLERRIILRAFGAELVLTDPAK-GMKGAVQKAEEI 138 (321)
Q Consensus 70 ~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~---------~-~~~~~~~~~~~Ga~v~~~~~~~-~~~~~~~~a~~~ 138 (321)
...+|+..++--|.++|......|.+++++-... . .....+.++..|.++..+..+- +.++..+...+.
T Consensus 7 k~~lITGas~GIG~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~~~~ 86 (286)
T PRK07791 7 RVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGGEAVANGDDIADWDGAANLVDAA 86 (286)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHHhcCCceEEEeCCCCCHHHHHHHHHHH
Confidence 3678888888888999998888999877764322 1 1122344556677776654332 334444555555
Q ss_pred HHh
Q 020805 139 LAK 141 (321)
Q Consensus 139 ~~~ 141 (321)
.++
T Consensus 87 ~~~ 89 (286)
T PRK07791 87 VET 89 (286)
T ss_pred HHh
Confidence 444
No 270
>cd05282 ETR_like 2-enoyl thioester reductase-like. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman
Probab=50.91 E-value=1.3e+02 Score=26.86 Aligned_cols=51 Identities=24% Similarity=0.296 Sum_probs=33.5
Q ss_pred CCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCC
Q 020805 64 GLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGA 117 (321)
Q Consensus 64 g~~~~g~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga 117 (321)
+.+.+|...+|...+|..|.+++..|+.+|.+.+++.+.. .+.+.++.+|+
T Consensus 134 ~~~~~~~~vlI~g~~~~vg~~~~~~a~~~g~~v~~~~~~~---~~~~~~~~~g~ 184 (323)
T cd05282 134 LKLPPGDWVIQNAANSAVGRMLIQLAKLLGFKTINVVRRD---EQVEELKALGA 184 (323)
T ss_pred ccCCCCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecCh---HHHHHHHhcCC
Confidence 4455665555555667888888888998888766554432 34555566665
No 271
>PRK09147 succinyldiaminopimelate transaminase; Provisional
Probab=50.90 E-value=2.2e+02 Score=26.74 Aligned_cols=79 Identities=10% Similarity=0.026 Sum_probs=42.2
Q ss_pred CCCchhhHHHHHHHHHHHHcCC--CCCCCeEEEeeCCChHHHHHHHHHHH-c-CCeEEEEecCCCCHHHHHHHHHcCCEE
Q 020805 44 PCSSVKDRIGYSMISDAEAKGL--ITPGESVLIEPTSGNTGIGLAFMAAA-K-QYRLIITMPASMSLERRIILRAFGAEL 119 (321)
Q Consensus 44 ptGS~K~R~a~~~l~~a~~~g~--~~~g~~~vv~~SsGN~g~AlA~aa~~-~-G~~~~ivvp~~~~~~~~~~~~~~Ga~v 119 (321)
+.|.-+.|-+....... ..|. +.+. ..|+..+++..+..++..+-. - |-.-.|++|.-.-..-...++.+|+++
T Consensus 64 ~~G~~~lr~~ia~~~~~-~~g~~~~~~~-~~i~it~G~~~al~~~~~~l~~~~~~gd~vlv~~P~y~~~~~~~~~~g~~~ 141 (396)
T PRK09147 64 TAGLPALREAIAAWLER-RYGLPALDPA-TQVLPVNGSREALFAFAQTVIDRDGPGPLVVCPNPFYQIYEGAALLAGAEP 141 (396)
T ss_pred CCCCHHHHHHHHHHHHH-HhCCCcCCcc-ceEEECCChHHHHHHHHHHHcCCCCCCCEEEEcCCCccchHHHHHhcCCEE
Confidence 45666677544322221 2242 3332 246666777777655544322 2 112345555433344455678899999
Q ss_pred EEeCC
Q 020805 120 VLTDP 124 (321)
Q Consensus 120 ~~~~~ 124 (321)
+.++-
T Consensus 142 ~~vp~ 146 (396)
T PRK09147 142 YFLNC 146 (396)
T ss_pred EEecc
Confidence 98874
No 272
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=50.78 E-value=1.3e+02 Score=26.06 Aligned_cols=70 Identities=19% Similarity=0.035 Sum_probs=41.3
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeCCCC-ChhHHHHHHHHHHH
Q 020805 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTDPAK-GMKGAVQKAEEILA 140 (321)
Q Consensus 71 ~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~-~~~~~~~~~~Ga~v~~~~~~~-~~~~~~~~a~~~~~ 140 (321)
..+|+..+|.-|.++|......|.+++++-..... ....+.++..+.++..+..+- +.+...+...+..+
T Consensus 11 ~~lItGas~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 82 (254)
T PRK08085 11 NILITGSAQGIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQEGIKAHAAPFNVTHKQEVEAAIEHIEK 82 (254)
T ss_pred EEEEECCCChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHH
Confidence 67888889999999999988889877665432111 112234455566666554332 22333333444433
No 273
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=50.73 E-value=1.1e+02 Score=26.10 Aligned_cols=56 Identities=11% Similarity=0.022 Sum_probs=37.5
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCH-HHHHHHHHcCCEEEEeCCC
Q 020805 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSL-ERRIILRAFGAELVLTDPA 125 (321)
Q Consensus 70 ~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~-~~~~~~~~~Ga~v~~~~~~ 125 (321)
...+|+..+|.-|.++|......|..++++....... ...+.++..+.++..+..+
T Consensus 4 ~~ilItGas~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~d 60 (250)
T TIGR03206 4 KTAIVTGGGGGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAKGGNAQAFACD 60 (250)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcCCcEEEEEcC
Confidence 3678888899999999999888899877665432111 1123345557677666544
No 274
>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family. This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc.
Probab=50.71 E-value=1.1e+02 Score=27.33 Aligned_cols=50 Identities=22% Similarity=0.380 Sum_probs=34.6
Q ss_pred CCCCC-eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE
Q 020805 66 ITPGE-SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAE 118 (321)
Q Consensus 66 ~~~g~-~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~ 118 (321)
+.+|. ..+|...+|..|.+++..|+.+|.+.+++... ..+.+.++.+|++
T Consensus 142 ~~~~~~~vlI~g~~g~vg~~~~~la~~~G~~vi~~~~~---~~~~~~~~~~g~~ 192 (323)
T TIGR02823 142 LTPEDGPVLVTGATGGVGSLAVAILSKLGYEVVASTGK---AEEEDYLKELGAS 192 (323)
T ss_pred CCCCCceEEEEcCCcHHHHHHHHHHHHcCCeEEEEeCC---HHHHHHHHhcCCc
Confidence 55665 55555556999999999999999886555433 3445666778874
No 275
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=50.58 E-value=1.5e+02 Score=25.54 Aligned_cols=70 Identities=20% Similarity=0.242 Sum_probs=43.2
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC--HHHHHHHHHcCCEEEEeCCCCC-hhHHHHHHHHHHH
Q 020805 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS--LERRIILRAFGAELVLTDPAKG-MKGAVQKAEEILA 140 (321)
Q Consensus 71 ~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~--~~~~~~~~~~Ga~v~~~~~~~~-~~~~~~~a~~~~~ 140 (321)
..+|+..+|.-|.++|..-...|.+++++.....+ ....+.++..+.++..+..+.. .++..+...+..+
T Consensus 4 ~vlItG~sg~iG~~la~~L~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 76 (256)
T PRK12745 4 VALVTGGRRGIGLGIARALAAAGFDLAINDRPDDEELAATQQELRALGVEVIFFPADVADLSAHEAMLDAAQA 76 (256)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEecCchhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHH
Confidence 46888888999999999988889987777544322 2234455556777766654322 2333333444433
No 276
>PRK06949 short chain dehydrogenase; Provisional
Probab=50.56 E-value=1e+02 Score=26.59 Aligned_cols=33 Identities=15% Similarity=0.221 Sum_probs=26.9
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecC
Q 020805 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPA 102 (321)
Q Consensus 70 ~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~ 102 (321)
...+|+..+|.-|.++|......|.+++++...
T Consensus 10 k~ilItGasg~IG~~~a~~l~~~G~~Vi~~~r~ 42 (258)
T PRK06949 10 KVALVTGASSGLGARFAQVLAQAGAKVVLASRR 42 (258)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 467888888999999999998899987666543
No 277
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=50.51 E-value=1.2e+02 Score=27.17 Aligned_cols=72 Identities=21% Similarity=0.251 Sum_probs=47.9
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHH--HHHHHHcCCEEEEeCCCCC-hhHHHHHHHHHHHh
Q 020805 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLER--RIILRAFGAELVLTDPAKG-MKGAVQKAEEILAK 141 (321)
Q Consensus 70 ~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~--~~~~~~~Ga~v~~~~~~~~-~~~~~~~a~~~~~~ 141 (321)
...|||..|+.-|.++|..-++.|.+++++-.....-.. .+.-+.+|.++...+-+.. .++..+...++..+
T Consensus 7 ~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~DLs~~~~~~~l~~~l~~~ 81 (265)
T COG0300 7 KTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELEDKTGVEVEVIPADLSDPEALERLEDELKER 81 (265)
T ss_pred cEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhhCceEEEEECcCCChhHHHHHHHHHHhc
Confidence 367899999999999999999999999999877532222 2233456777766664432 23444444455443
No 278
>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically
Probab=50.48 E-value=1.1e+02 Score=28.60 Aligned_cols=54 Identities=19% Similarity=0.288 Sum_probs=36.3
Q ss_pred HcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE
Q 020805 62 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAE 118 (321)
Q Consensus 62 ~~g~~~~g~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~ 118 (321)
+.+.+++|...+|. .+|.-|.+++..|+.+|.+-++++. ....+.+.++.+|++
T Consensus 184 ~~~~~~~g~~VlV~-G~g~vG~~~~~~a~~~G~~~Vi~~~--~~~~~~~~a~~lGa~ 237 (373)
T cd08299 184 NTAKVTPGSTCAVF-GLGGVGLSAIMGCKAAGASRIIAVD--INKDKFAKAKELGAT 237 (373)
T ss_pred hccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEc--CCHHHHHHHHHcCCc
Confidence 34556666555554 6788888988899999984334432 234667777888874
No 279
>PLN00175 aminotransferase family protein; Provisional
Probab=50.45 E-value=2.3e+02 Score=26.92 Aligned_cols=52 Identities=10% Similarity=-0.004 Sum_probs=32.5
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCC
Q 020805 72 VLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 124 (321)
Q Consensus 72 ~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~ 124 (321)
.|+..+++..+..++..+- ++-.-.|++++-.-..-...++.+|++++.++-
T Consensus 117 ~I~vt~G~~~al~~~~~~l-~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~ 168 (413)
T PLN00175 117 EVTVTSGCTEAIAATILGL-INPGDEVILFAPFYDSYEATLSMAGAKIKTVTL 168 (413)
T ss_pred CEEEeCCHHHHHHHHHHHh-CCCCCEEEEeCCCchhHHHHHHHcCCEEEEEEC
Confidence 3666666677766655543 333344555554444456678889999998864
No 280
>PRK07677 short chain dehydrogenase; Provisional
Probab=50.34 E-value=1.2e+02 Score=26.17 Aligned_cols=70 Identities=17% Similarity=0.164 Sum_probs=40.9
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeCCCC-ChhHHHHHHHHHHH
Q 020805 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTDPAK-GMKGAVQKAEEILA 140 (321)
Q Consensus 71 ~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~-~~~~~~~~~~Ga~v~~~~~~~-~~~~~~~~a~~~~~ 140 (321)
..+|+..+|.-|.++|......|..++++-..... ....+.++..+.+++.+..+. +.+...+...+..+
T Consensus 3 ~~lItG~s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 74 (252)
T PRK07677 3 VVIITGGSSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQFPGQVLTVQMDVRNPEDVQKMVEQIDE 74 (252)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHH
Confidence 56888888899999999988899976665433211 112233445566666554332 22333343444433
No 281
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=50.32 E-value=54 Score=27.35 Aligned_cols=31 Identities=19% Similarity=0.276 Sum_probs=24.8
Q ss_pred EEeeCCChHHHHHHHHHHHcCCeEEEEecCC
Q 020805 73 LIEPTSGNTGIGLAFMAAAKQYRLIITMPAS 103 (321)
Q Consensus 73 vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~ 103 (321)
|..-.+|..|.++|..+...|++++++-+..
T Consensus 2 V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 32 (180)
T PF02737_consen 2 VAVIGAGTMGRGIAALFARAGYEVTLYDRSP 32 (180)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEE-SSH
T ss_pred EEEEcCCHHHHHHHHHHHhCCCcEEEEECCh
Confidence 4445779999999999999999999996653
No 282
>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=50.31 E-value=1.2e+02 Score=26.94 Aligned_cols=51 Identities=27% Similarity=0.403 Sum_probs=36.0
Q ss_pred CCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE
Q 020805 64 GLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAE 118 (321)
Q Consensus 64 g~~~~g~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~ 118 (321)
+.+.+|...+|...+|..|.+++..|+..|++.+.+.+. .+.+.++.+|++
T Consensus 139 ~~~~~g~~vli~g~~g~~g~~~~~la~~~g~~v~~~~~~----~~~~~~~~~g~~ 189 (319)
T cd08267 139 GKVKPGQRVLINGASGGVGTFAVQIAKALGAHVTGVCST----RNAELVRSLGAD 189 (319)
T ss_pred cCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCH----HHHHHHHHcCCC
Confidence 335566565565566899999999999999986666532 556666777763
No 283
>PRK12828 short chain dehydrogenase; Provisional
Probab=50.27 E-value=1.4e+02 Score=25.12 Aligned_cols=55 Identities=18% Similarity=0.017 Sum_probs=38.5
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeCC
Q 020805 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTDP 124 (321)
Q Consensus 70 ~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~-~~~~~~~~~~Ga~v~~~~~ 124 (321)
...+|+.++|--|.++|......|.+++++.....+ ......+...+.+++.++-
T Consensus 8 k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~ 63 (239)
T PRK12828 8 KVVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLSQTLPGVPADALRIGGIDL 63 (239)
T ss_pred CEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHhHHHHHHHHhhcCceEEEeec
Confidence 367888889999999999888889997766654322 2233445566777776664
No 284
>PRK09414 glutamate dehydrogenase; Provisional
Probab=50.07 E-value=75 Score=30.83 Aligned_cols=52 Identities=10% Similarity=-0.125 Sum_probs=39.1
Q ss_pred hHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEec
Q 020805 50 DRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMP 101 (321)
Q Consensus 50 ~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp 101 (321)
-||..+.+..+.+.......+.+|+....||-|..+|.....+|.+++.+..
T Consensus 212 g~Gv~~~~~~~~~~~~~~l~g~rVaIqGfGnVG~~~A~~L~~~GakVVavsD 263 (445)
T PRK09414 212 GYGLVYFAEEMLKARGDSFEGKRVVVSGSGNVAIYAIEKAQQLGAKVVTCSD 263 (445)
T ss_pred cHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEc
Confidence 4678888877765433344457888899999999999998777877777654
No 285
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=49.97 E-value=1.1e+02 Score=26.31 Aligned_cols=55 Identities=13% Similarity=0.115 Sum_probs=37.9
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC--HHHHHHHHHcCCEEEEeCCC
Q 020805 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS--LERRIILRAFGAELVLTDPA 125 (321)
Q Consensus 71 ~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~--~~~~~~~~~~Ga~v~~~~~~ 125 (321)
..+|+.++|--|.++|......|.++++....... ......++..|.++..+..+
T Consensus 8 ~vlitGasg~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 64 (252)
T PRK06077 8 VVVVTGSGRGIGRAIAVRLAKEGSLVVVNAKKRAEEMNETLKMVKENGGEGIGVLAD 64 (252)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHHcCCeeEEEEec
Confidence 66888888889999999888899987765533221 22345566778777665543
No 286
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=49.95 E-value=1.3e+02 Score=26.14 Aligned_cols=56 Identities=16% Similarity=0.217 Sum_probs=36.7
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeCCC
Q 020805 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTDPA 125 (321)
Q Consensus 70 ~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~-~~~~~~~~~~Ga~v~~~~~~ 125 (321)
...+|+..+|--|.++|......|.+++++...... +...+.++..+.++..+..+
T Consensus 13 k~ilItGa~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~D 69 (259)
T PRK08213 13 KTALVTGGSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALGIDALWIAAD 69 (259)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 367888888889999998888889987665443211 11223445667777666544
No 287
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=49.95 E-value=1.3e+02 Score=32.34 Aligned_cols=33 Identities=9% Similarity=0.102 Sum_probs=29.1
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecC
Q 020805 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPA 102 (321)
Q Consensus 70 ~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~ 102 (321)
++.|+.-.+|-.|.++|+..++.|.++++|=..
T Consensus 383 gKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~ 415 (1028)
T PRK06567 383 NYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGL 415 (1028)
T ss_pred CCeEEEECcCHHHHHHHHHHHhCCCeEEEEccc
Confidence 357888999999999999999999999999543
No 288
>PRK10083 putative oxidoreductase; Provisional
Probab=49.94 E-value=1.7e+02 Score=26.46 Aligned_cols=57 Identities=19% Similarity=0.218 Sum_probs=38.5
Q ss_pred HHcCCCCCCCeEEEeeCCChHHHHHHHHHHH-cCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 020805 61 EAKGLITPGESVLIEPTSGNTGIGLAFMAAA-KQYRLIITMPASMSLERRIILRAFGAELV 120 (321)
Q Consensus 61 ~~~g~~~~g~~~vv~~SsGN~g~AlA~aa~~-~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~ 120 (321)
.+...+.+|...+| ..+|--|.+++..|+. +|.+.++.+.. .+.|.+.++.+|++-+
T Consensus 153 ~~~~~~~~g~~vlI-~g~g~vG~~~~~~a~~~~G~~~v~~~~~--~~~~~~~~~~~Ga~~~ 210 (339)
T PRK10083 153 TGRTGPTEQDVALI-YGAGPVGLTIVQVLKGVYNVKAVIVADR--IDERLALAKESGADWV 210 (339)
T ss_pred HHhcCCCCCCEEEE-ECCCHHHHHHHHHHHHhCCCCEEEEEcC--CHHHHHHHHHhCCcEE
Confidence 34455667755555 4478888887778885 59876665433 4677888888998544
No 289
>PRK06198 short chain dehydrogenase; Provisional
Probab=49.82 E-value=1.6e+02 Score=25.38 Aligned_cols=55 Identities=16% Similarity=0.167 Sum_probs=37.2
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCH--HHHHHHHHcCCEEEEeCCC
Q 020805 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSL--ERRIILRAFGAELVLTDPA 125 (321)
Q Consensus 71 ~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~--~~~~~~~~~Ga~v~~~~~~ 125 (321)
..+|+..+|.-|..+|......|.+.++++..+... .....++..|.++..+..+
T Consensus 8 ~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D 64 (260)
T PRK06198 8 VALVTGGTQGLGAAIARAFAERGAAGLVICGRNAEKGEAQAAELEALGAKAVFVQAD 64 (260)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 668888889999999999889999844444443221 2233556678888665543
No 290
>PRK05826 pyruvate kinase; Provisional
Probab=49.40 E-value=2.1e+02 Score=27.95 Aligned_cols=124 Identities=11% Similarity=0.073 Sum_probs=72.9
Q ss_pred HHHHHHHcCCeEEEE-----------ecCCCCHHHHHHHHHcCCEEEEeCCCC----ChhHHHHHHHHHHHhCCCeEEcC
Q 020805 85 LAFMAAAKQYRLIIT-----------MPASMSLERRIILRAFGAELVLTDPAK----GMKGAVQKAEEILAKTPNAYMLQ 149 (321)
Q Consensus 85 lA~aa~~~G~~~~iv-----------vp~~~~~~~~~~~~~~Ga~v~~~~~~~----~~~~~~~~a~~~~~~~~~~~~~~ 149 (321)
+...|++.|.++++- .|..+...-+...-..|++-+...++. ...++.+...+.+++.+..++..
T Consensus 264 Ii~~c~~~gKpvi~ATqmLeSM~~~p~PTRAEvsDVanav~dG~D~vmLS~ETA~G~yPveaV~~m~~I~~~aE~~~~~~ 343 (465)
T PRK05826 264 IIRKAREAGKPVITATQMLESMIENPRPTRAEVSDVANAVLDGTDAVMLSGETAAGKYPVEAVEAMARICKGAEKEFSIN 343 (465)
T ss_pred HHHHHHHcCCCEEEECHHHHHHhhCCCCchhhhhhHHHHHHcCCcEEEeccccccCcCHHHHHHHHHHHHHHHHhccchh
Confidence 445699999998874 455555555566666799988776431 12355555444444332211110
Q ss_pred ---CC-CCC-cchhhhhhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHHhcCCCcEEEEEecCCC
Q 020805 150 ---QF-ENP-ANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTES 213 (321)
Q Consensus 150 ---~~-~~~-~~~~~g~~~~~~Ei~~ql~~~~d~vv~p~G~Gg~~aGi~~~~k~~~~~~~vigv~~~~~ 213 (321)
.. ... ..........+.++.++++ +.+.||+..-+|.++--+++ ..|.+.|+++.+...
T Consensus 344 ~~~~~~~~~~~~~~~~ia~aa~~~a~~l~-~a~~Ivv~T~sG~ta~~isk----~RP~~pI~~~t~~~~ 407 (465)
T PRK05826 344 LSKHRLDRQFDRIDEAIAMSAMYAANHLK-GVKAIVALTESGRTARLISR----FRPGAPIFAVTRDEK 407 (465)
T ss_pred hhhhhccccccchHHHHHHHHHHHHHhcC-CCCEEEEECCCcHHHHHHHh----hCCCCCEEEEcCCHH
Confidence 00 000 0112234445557777772 26789999999988755444 469999999986543
No 291
>PRK07814 short chain dehydrogenase; Provisional
Probab=49.39 E-value=1.2e+02 Score=26.44 Aligned_cols=54 Identities=15% Similarity=0.150 Sum_probs=35.2
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeC
Q 020805 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTD 123 (321)
Q Consensus 70 ~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~-~~~~~~~~~~Ga~v~~~~ 123 (321)
+..+|+.++|--|.++|-.....|.+++++...... ....+.++..|.++....
T Consensus 11 ~~vlItGasggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~ 65 (263)
T PRK07814 11 QVAVVTGAGRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAAGRRAHVVA 65 (263)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEE
Confidence 367888888999999998888889987776543211 112233444566665544
No 292
>cd08244 MDR_enoyl_red Possible enoyl reductase. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr
Probab=49.34 E-value=1.8e+02 Score=25.99 Aligned_cols=53 Identities=26% Similarity=0.395 Sum_probs=33.0
Q ss_pred HcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCC
Q 020805 62 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGA 117 (321)
Q Consensus 62 ~~g~~~~g~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga 117 (321)
+...++++...+|...+|..|.+++..|+.+|.+.+.+.+ ...+.+.++.+|+
T Consensus 136 ~~~~~~~~~~vlI~g~~~~~g~~~~~la~~~g~~v~~~~~---~~~~~~~~~~~g~ 188 (324)
T cd08244 136 DLATLTPGDVVLVTAAAGGLGSLLVQLAKAAGATVVGAAG---GPAKTALVRALGA 188 (324)
T ss_pred HhcCCCCCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeC---CHHHHHHHHHcCC
Confidence 3445566656566556788888888888888887544422 2334445555665
No 293
>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional
Probab=49.30 E-value=56 Score=30.64 Aligned_cols=55 Identities=16% Similarity=0.131 Sum_probs=39.7
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCC
Q 020805 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPA 125 (321)
Q Consensus 71 ~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~ 125 (321)
+.++..++|..|..++..+...+-.-.|++|..+-..-...++..|+++++++.+
T Consensus 47 ~~~v~~~sgt~al~~~l~~~~~~~Gd~Viv~~~t~~~~~~~~~~~G~~~v~~d~d 101 (375)
T PRK11706 47 AKVLLTPSCTAALEMAALLLDIQPGDEVIMPSYTFVSTANAFVLRGAKIVFVDIR 101 (375)
T ss_pred CeEEEECCHHHHHHHHHHHhCCCCCCEEEECCCCcHHHHHHHHHcCCEEEEEecC
Confidence 4577778888876665544333334578888877777788889999999999753
No 294
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=49.30 E-value=1.6e+02 Score=29.20 Aligned_cols=104 Identities=25% Similarity=0.244 Sum_probs=67.8
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEcCC
Q 020805 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQ 150 (321)
Q Consensus 71 ~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 150 (321)
+++..-.-|+-|+++|..++.+|++++++=|.. +.. ....+|.+.. + . .++.++. +...++-
T Consensus 141 ktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~-~~~---~~~~~g~~~~--~----l-------~ell~~a-DiV~l~l 202 (526)
T PRK13581 141 KTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPYI-SPE---RAAQLGVELV--S----L-------DELLARA-DFITLHT 202 (526)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCC-Chh---HHHhcCCEEE--c----H-------HHHHhhC-CEEEEcc
Confidence 567777889999999999999999988886643 222 2234565432 1 1 2333443 5555443
Q ss_pred CCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhH--HHHHHHHHh
Q 020805 151 FENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTI--TGAGKFLKE 198 (321)
Q Consensus 151 ~~~~~~~~~g~~~~~~Ei~~ql~~~~d~vv~p~G~Gg~~--aGi~~~~k~ 198 (321)
-.++.. ...+..|.++++ +++.+++-+|.|+.+ ..+..+++.
T Consensus 203 P~t~~t----~~li~~~~l~~m--k~ga~lIN~aRG~~vde~aL~~aL~~ 246 (526)
T PRK13581 203 PLTPET----RGLIGAEELAKM--KPGVRIINCARGGIIDEAALAEALKS 246 (526)
T ss_pred CCChHh----hcCcCHHHHhcC--CCCeEEEECCCCceeCHHHHHHHHhc
Confidence 323222 234556888887 578999999999987 556666664
No 295
>PRK12831 putative oxidoreductase; Provisional
Probab=49.30 E-value=73 Score=30.97 Aligned_cols=53 Identities=17% Similarity=0.072 Sum_probs=40.3
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCC---C--CHHHHHHHHHcCCEEEEeC
Q 020805 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPAS---M--SLERRIILRAFGAELVLTD 123 (321)
Q Consensus 71 ~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~---~--~~~~~~~~~~~Ga~v~~~~ 123 (321)
+.|+.-.+||.|.-+|..+.++|.+++++.... . ....++.++..|.+++...
T Consensus 282 k~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~~~~m~a~~~e~~~a~~eGV~i~~~~ 339 (464)
T PRK12831 282 KKVAVVGGGNVAMDAARTALRLGAEVHIVYRRSEEELPARVEEVHHAKEEGVIFDLLT 339 (464)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCEEEEEeecCcccCCCCHHHHHHHHHcCCEEEecc
Confidence 468889999999999999999999988887643 1 2344456677888876544
No 296
>PLN02827 Alcohol dehydrogenase-like
Probab=49.23 E-value=1.4e+02 Score=28.02 Aligned_cols=55 Identities=24% Similarity=0.254 Sum_probs=37.3
Q ss_pred cCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 020805 63 KGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 120 (321)
Q Consensus 63 ~g~~~~g~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~ 120 (321)
.+.+.+|...+|. .+|--|.+++..|+.+|.+.++.+.. ++.|.+.++.+|++-+
T Consensus 188 ~~~~~~g~~VlV~-G~G~vG~~~iqlak~~G~~~vi~~~~--~~~~~~~a~~lGa~~~ 242 (378)
T PLN02827 188 VADVSKGSSVVIF-GLGTVGLSVAQGAKLRGASQIIGVDI--NPEKAEKAKTFGVTDF 242 (378)
T ss_pred hcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEECC--CHHHHHHHHHcCCcEE
Confidence 3456677555554 56888888888899999865544432 4567777888888543
No 297
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=49.09 E-value=81 Score=30.00 Aligned_cols=91 Identities=14% Similarity=0.055 Sum_probs=40.7
Q ss_pred cCCeEEEEecCCCCHHHHHHHHHcCCE-EEEeCCCCChh--HHHHHHHHHHHhCCCeEEc-C-CCCCCcchhhhhhchHH
Q 020805 92 KQYRLIITMPASMSLERRIILRAFGAE-LVLTDPAKGMK--GAVQKAEEILAKTPNAYML-Q-QFENPANPKIHYETTGP 166 (321)
Q Consensus 92 ~G~~~~ivvp~~~~~~~~~~~~~~Ga~-v~~~~~~~~~~--~~~~~a~~~~~~~~~~~~~-~-~~~~~~~~~~g~~~~~~ 166 (321)
+-.|..|+.-.+.-..--+.++.+|.+ +.++.+. +.. ...+...+..++.+-.+.+ + .-.||.. ....-+.
T Consensus 24 f~~P~~i~fG~g~~~~l~~~~~~~g~~~~lvv~~~-~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~P~~---~~v~~~~ 99 (395)
T PRK15454 24 FSVPPVTLCGPGAVSSCGQQAQTRGLKHLFVMADS-FLHQAGMTAGLTRSLAVKGIAMTLWPCPVGEPCI---TDVCAAV 99 (395)
T ss_pred eecCCeEEECcCHHHHHHHHHHhcCCCEEEEEcCc-chhhCccHHHHHHHHHHcCCeEEEECCCCCCcCH---HHHHHHH
Confidence 444555555554433334556777744 3444331 221 1123333333333112211 1 1113322 2222334
Q ss_pred HHHhhhCCCCCEEEEecCCchhH
Q 020805 167 ELWKGSGGRIDALVSGIGTGGTI 189 (321)
Q Consensus 167 Ei~~ql~~~~d~vv~p~G~Gg~~ 189 (321)
+++++. ++| +|+++|+|+.+
T Consensus 100 ~~~r~~--~~D-~IiavGGGS~i 119 (395)
T PRK15454 100 AQLRES--GCD-GVIAFGGGSVL 119 (395)
T ss_pred HHHHhc--CcC-EEEEeCChHHH
Confidence 455553 578 77889988876
No 298
>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo
Probab=48.96 E-value=1.1e+02 Score=27.57 Aligned_cols=38 Identities=32% Similarity=0.369 Sum_probs=28.1
Q ss_pred HcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEE
Q 020805 62 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIIT 99 (321)
Q Consensus 62 ~~g~~~~g~~~vv~~SsGN~g~AlA~aa~~~G~~~~iv 99 (321)
+...+++|...+|...+|..|.+++..|+..|.+.+++
T Consensus 156 ~~~~~~~g~~vlI~g~~g~vg~~~~~~a~~~G~~v~~~ 193 (325)
T cd08264 156 KTAGLGPGETVVVFGASGNTGIFAVQLAKMMGAEVIAV 193 (325)
T ss_pred HhcCCCCCCEEEEECCCchHHHHHHHHHHHcCCeEEEE
Confidence 33456667665665556999999999999999886555
No 299
>PRK05717 oxidoreductase; Validated
Probab=48.92 E-value=1.6e+02 Score=25.37 Aligned_cols=70 Identities=13% Similarity=0.212 Sum_probs=41.6
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCC-ChhHHHHHHHHHHHh
Q 020805 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAK-GMKGAVQKAEEILAK 141 (321)
Q Consensus 70 ~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~-~~~~~~~~a~~~~~~ 141 (321)
+..+|+..+|.-|.++|......|.+++++-... ....+..+..+.+++.+..+- +.++..+...++.++
T Consensus 11 k~vlItG~sg~IG~~~a~~l~~~g~~v~~~~~~~--~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 81 (255)
T PRK05717 11 RVALVTGAARGIGLGIAAWLIAEGWQVVLADLDR--ERGSKVAKALGENAWFIAMDVADEAQVAAGVAEVLGQ 81 (255)
T ss_pred CEEEEeCCcchHHHHHHHHHHHcCCEEEEEcCCH--HHHHHHHHHcCCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 4678888899999999999888898877663321 112223344566665554432 223333334444443
No 300
>PRK08264 short chain dehydrogenase; Validated
Probab=48.58 E-value=88 Score=26.65 Aligned_cols=49 Identities=12% Similarity=0.095 Sum_probs=33.6
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCC-eEEEEecCCCCHHHHHHHHHcCCEEEEeCC
Q 020805 70 ESVLIEPTSGNTGIGLAFMAAAKQY-RLIITMPASMSLERRIILRAFGAELVLTDP 124 (321)
Q Consensus 70 ~~~vv~~SsGN~g~AlA~aa~~~G~-~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~ 124 (321)
...+|+..+|.-|.++|......|. +++++..... +.+. .+.++..+..
T Consensus 7 ~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~~---~~~~---~~~~~~~~~~ 56 (238)
T PRK08264 7 KVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDPE---SVTD---LGPRVVPLQL 56 (238)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCcccEEEEecChh---hhhh---cCCceEEEEe
Confidence 3678888899999999999999998 7666654321 2221 5556655543
No 301
>PRK07904 short chain dehydrogenase; Provisional
Probab=48.57 E-value=1.6e+02 Score=25.62 Aligned_cols=53 Identities=13% Similarity=0.189 Sum_probs=33.5
Q ss_pred eEEEeeCCChHHHHHHHHHHHc-CCeEEEEecCCCC--HHHHHHHHHcCC-EEEEeC
Q 020805 71 SVLIEPTSGNTGIGLAFMAAAK-QYRLIITMPASMS--LERRIILRAFGA-ELVLTD 123 (321)
Q Consensus 71 ~~vv~~SsGN~g~AlA~aa~~~-G~~~~ivvp~~~~--~~~~~~~~~~Ga-~v~~~~ 123 (321)
..+|+..+|--|.++|...... |.+++++.....+ ....+.++..|. ++..+.
T Consensus 10 ~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~ 66 (253)
T PRK07904 10 TILLLGGTSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGASSVEVID 66 (253)
T ss_pred EEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCCCceEEEE
Confidence 5678888888888888886666 4888777554332 222345555554 555443
No 302
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=48.18 E-value=1.8e+02 Score=24.91 Aligned_cols=51 Identities=12% Similarity=0.072 Sum_probs=35.5
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCC
Q 020805 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 124 (321)
Q Consensus 71 ~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~ 124 (321)
+.++...+|.-|..-+......|-.++|+-|+-.+. ++.+...| +|.++.+
T Consensus 10 k~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~~--l~~l~~~~-~i~~~~~ 60 (205)
T TIGR01470 10 RAVLVVGGGDVALRKARLLLKAGAQLRVIAEELESE--LTLLAEQG-GITWLAR 60 (205)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCHH--HHHHHHcC-CEEEEeC
Confidence 457778999999998888888999999888875432 33333344 4555443
No 303
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=48.11 E-value=1.2e+02 Score=27.59 Aligned_cols=49 Identities=29% Similarity=0.348 Sum_probs=33.4
Q ss_pred CCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE
Q 020805 67 TPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAE 118 (321)
Q Consensus 67 ~~g~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~ 118 (321)
.+|...+|. .+|..|.+++..|+.+|.+.++++ ..+..|....+.+|++
T Consensus 162 ~~g~~vlV~-g~g~vg~~~~~la~~~G~~~v~~~--~~~~~~~~~~~~~g~~ 210 (341)
T cd05281 162 VSGKSVLIT-GCGPIGLMAIAVAKAAGASLVIAS--DPNPYRLELAKKMGAD 210 (341)
T ss_pred CCCCEEEEE-CCCHHHHHHHHHHHHcCCcEEEEE--CCCHHHHHHHHHhCcc
Confidence 455555664 458888888888999998544444 3355677777777764
No 304
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=48.01 E-value=2.1e+02 Score=26.48 Aligned_cols=55 Identities=22% Similarity=0.250 Sum_probs=36.6
Q ss_pred cCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 020805 63 KGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 120 (321)
Q Consensus 63 ~g~~~~g~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~ 120 (321)
...+++|...+|. .+|..|.+++..|+.+|.+.++.+.. ++.|.+.++.+|++.+
T Consensus 181 ~~~~~~g~~vlI~-g~g~vG~~~~~la~~~G~~~v~~~~~--~~~k~~~~~~~g~~~~ 235 (365)
T cd08278 181 VLKPRPGSSIAVF-GAGAVGLAAVMAAKIAGCTTIIAVDI--VDSRLELAKELGATHV 235 (365)
T ss_pred hcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEeC--CHHHHHHHHHcCCcEE
Confidence 3445666555555 56888888888899999864444433 3566777777887433
No 305
>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.
Probab=47.98 E-value=1.4e+02 Score=26.65 Aligned_cols=52 Identities=29% Similarity=0.425 Sum_probs=36.3
Q ss_pred CCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE
Q 020805 64 GLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAE 118 (321)
Q Consensus 64 g~~~~g~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~ 118 (321)
..+.++...+|...+|..|.+++..++..|.+.+++... ..+.+.++.+|.+
T Consensus 158 ~~~~~~~~vlI~ga~g~vG~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~~~~ 209 (332)
T cd08259 158 AGVKKGDTVLVTGAGGGVGIHAIQLAKALGARVIAVTRS---PEKLKILKELGAD 209 (332)
T ss_pred hCCCCCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEeCC---HHHHHHHHHcCCc
Confidence 456666666777777899999999999999887666432 3445555666653
No 306
>PRK06138 short chain dehydrogenase; Provisional
Probab=47.91 E-value=1.5e+02 Score=25.27 Aligned_cols=70 Identities=9% Similarity=0.065 Sum_probs=41.2
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeCCCC-ChhHHHHHHHHHHH
Q 020805 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTDPAK-GMKGAVQKAEEILA 140 (321)
Q Consensus 70 ~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~-~~~~~~~~~~Ga~v~~~~~~~-~~~~~~~~a~~~~~ 140 (321)
+..+|+..+|--|.++|......|.+++++...... ......++ .+.++..+..+. +.++..+...+..+
T Consensus 6 k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~i~~ 77 (252)
T PRK06138 6 RVAIVTGAGSGIGRATAKLFAREGARVVVADRDAEAAERVAAAIA-AGGRAFARQGDVGSAEAVEALVDFVAA 77 (252)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCCeEEEecCCHHHHHHHHHHHh-cCCeEEEEEcCCCCHHHHHHHHHHHHH
Confidence 367888888999999999888889887666543211 11222333 477666655432 23333344444433
No 307
>PRK06436 glycerate dehydrogenase; Provisional
Probab=47.90 E-value=1.6e+02 Score=26.99 Aligned_cols=101 Identities=13% Similarity=0.110 Sum_probs=63.4
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEcCC
Q 020805 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQ 150 (321)
Q Consensus 71 ~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 150 (321)
+++-.-.-|+-|+++|..++.+|++++++-+...+ .|.... .. + ..++.++. +...++-
T Consensus 123 ktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~~~---------~~~~~~-~~---~-------l~ell~~a-Div~~~l 181 (303)
T PRK06436 123 KSLGILGYGGIGRRVALLAKAFGMNIYAYTRSYVN---------DGISSI-YM---E-------PEDIMKKS-DFVLISL 181 (303)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcc---------cCcccc-cC---C-------HHHHHhhC-CEEEECC
Confidence 56777788999999999999999998888654211 122111 11 1 12344443 5555443
Q ss_pred CCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhH--HHHHHHHHh
Q 020805 151 FENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTI--TGAGKFLKE 198 (321)
Q Consensus 151 ~~~~~~~~~g~~~~~~Ei~~ql~~~~d~vv~p~G~Gg~~--aGi~~~~k~ 198 (321)
-.++. -+..+..+.++++ ++..+++-+|.|+.+ ..+..++++
T Consensus 182 p~t~~----T~~li~~~~l~~m--k~ga~lIN~sRG~~vd~~aL~~aL~~ 225 (303)
T PRK06436 182 PLTDE----TRGMINSKMLSLF--RKGLAIINVARADVVDKNDMLNFLRN 225 (303)
T ss_pred CCCch----hhcCcCHHHHhcC--CCCeEEEECCCccccCHHHHHHHHHc
Confidence 33332 2344567788887 468999999999987 445556653
No 308
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=47.76 E-value=2.1e+02 Score=25.81 Aligned_cols=52 Identities=31% Similarity=0.462 Sum_probs=34.0
Q ss_pred HcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCC
Q 020805 62 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGA 117 (321)
Q Consensus 62 ~~g~~~~g~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga 117 (321)
+...+.+|...+|. .+|..|.+++..|+.+|++++++.. +..+.+.++.+|+
T Consensus 153 ~~~~l~~g~~vLI~-g~g~vG~~a~~lA~~~g~~v~~~~~---s~~~~~~~~~~g~ 204 (337)
T cd08261 153 RRAGVTAGDTVLVV-GAGPIGLGVIQVAKARGARVIVVDI---DDERLEFARELGA 204 (337)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCeEEEECC---CHHHHHHHHHhCC
Confidence 34456666555555 4677788888888888888655532 3556666666664
No 309
>PRK06836 aspartate aminotransferase; Provisional
Probab=47.67 E-value=2.4e+02 Score=26.41 Aligned_cols=53 Identities=15% Similarity=0.161 Sum_probs=32.2
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCC
Q 020805 72 VLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPA 125 (321)
Q Consensus 72 ~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~ 125 (321)
.|+..++++.+..++..+- ..-.-.|+++.-.-..-...++.+|++++.++.+
T Consensus 98 ~i~~t~G~~~al~~~~~~l-~~~gd~Vli~~p~~~~~~~~~~~~g~~v~~v~~~ 150 (394)
T PRK06836 98 HIVMTCGAAGALNVALKAI-LNPGDEVIVFAPYFVEYRFYVDNHGGKLVVVPTD 150 (394)
T ss_pred cEEEeCChHHHHHHHHHHh-cCCCCEEEEcCCCCccHHHHHHHcCCEEEEEecC
Confidence 4666666677766554432 2223455556544344456678899999998753
No 310
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=47.60 E-value=1.9e+02 Score=25.06 Aligned_cols=32 Identities=25% Similarity=0.284 Sum_probs=26.7
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCeEEEEecCC
Q 020805 72 VLIEPTSGNTGIGLAFMAAAKQYRLIITMPAS 103 (321)
Q Consensus 72 ~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~ 103 (321)
.+.....||-|.++|..-.+.|++++|--...
T Consensus 3 ~~~i~GtGniG~alA~~~a~ag~eV~igs~r~ 34 (211)
T COG2085 3 IIAIIGTGNIGSALALRLAKAGHEVIIGSSRG 34 (211)
T ss_pred EEEEeccChHHHHHHHHHHhCCCeEEEecCCC
Confidence 45567889999999999999999988875554
No 311
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=47.56 E-value=1.8e+02 Score=24.88 Aligned_cols=51 Identities=31% Similarity=0.519 Sum_probs=33.1
Q ss_pred CCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE
Q 020805 64 GLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAE 118 (321)
Q Consensus 64 g~~~~g~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~ 118 (321)
..+.++...++...++ .|.+++..++..|.+.+++.+. +.+.+.++.+|++
T Consensus 130 ~~~~~~~~vli~g~~~-~G~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~ 180 (271)
T cd05188 130 GVLKPGDTVLVLGAGG-VGLLAAQLAKAAGARVIVTDRS---DEKLELAKELGAD 180 (271)
T ss_pred cCCCCCCEEEEECCCH-HHHHHHHHHHHcCCeEEEEcCC---HHHHHHHHHhCCc
Confidence 3335565656655555 9999999999999776665433 3555666666654
No 312
>PLN02342 ornithine carbamoyltransferase
Probab=47.54 E-value=1.1e+02 Score=28.77 Aligned_cols=59 Identities=17% Similarity=0.253 Sum_probs=40.2
Q ss_pred cCCCCCCCeEEEeeCC-ChHHHHHHHHHHHcCCeEEEEecCCC--CHHHHHHHHHcCC-EEEEeC
Q 020805 63 KGLITPGESVLIEPTS-GNTGIGLAFMAAAKQYRLIITMPASM--SLERRIILRAFGA-ELVLTD 123 (321)
Q Consensus 63 ~g~~~~g~~~vv~~Ss-GN~g~AlA~aa~~~G~~~~ivvp~~~--~~~~~~~~~~~Ga-~v~~~~ 123 (321)
.|.+. | .+|+-... .|.+.+++.+++++|++++++.|+.. +...++.++..|. ++..+.
T Consensus 189 ~G~l~-g-lkva~vGD~~nva~Sli~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~~ 251 (348)
T PLN02342 189 IGRLE-G-TKVVYVGDGNNIVHSWLLLAAVLPFHFVCACPKGYEPDAKTVEKARAAGISKIEITN 251 (348)
T ss_pred hCCcC-C-CEEEEECCCchhHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHhCCCcEEEEc
Confidence 45443 2 33443333 58889999999999999999999864 4445566666774 666554
No 313
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=47.35 E-value=1.7e+02 Score=25.91 Aligned_cols=70 Identities=20% Similarity=0.170 Sum_probs=38.7
Q ss_pred eEEEeeCCC--hHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHH-HHcCCEE-EEeCCCCChhHHHHHHHHHHHh
Q 020805 71 SVLIEPTSG--NTGIGLAFMAAAKQYRLIITMPASMSLERRIIL-RAFGAEL-VLTDPAKGMKGAVQKAEEILAK 141 (321)
Q Consensus 71 ~~vv~~SsG--N~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~-~~~Ga~v-~~~~~~~~~~~~~~~a~~~~~~ 141 (321)
..|||..++ .-|.++|......|.+++++-.......+++.+ +..|..+ +.++- .+.++..+...+..++
T Consensus 9 ~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~g~~~~~~~Dv-~d~~~v~~~~~~~~~~ 82 (271)
T PRK06505 9 RGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGEALGKRVKPLAESLGSDFVLPCDV-EDIASVDAVFEALEKK 82 (271)
T ss_pred EEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCchHHHHHHHHHHHhcCCceEEeCCC-CCHHHHHHHHHHHHHH
Confidence 567777665 688889988889999887764322122233333 3446433 22332 2334444445554443
No 314
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=47.23 E-value=1.5e+02 Score=25.35 Aligned_cols=55 Identities=15% Similarity=0.120 Sum_probs=37.2
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeCCC
Q 020805 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTDPA 125 (321)
Q Consensus 71 ~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~-~~~~~~~~~~Ga~v~~~~~~ 125 (321)
..+|+..+|.-|.++|......|.+++++-..... ....+.++..|.++..+..+
T Consensus 2 ~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D 57 (254)
T TIGR02415 2 VALVTGGAQGIGKGIAERLAKDGFAVAVADLNEETAKETAKEINQAGGKAVAYKLD 57 (254)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcC
Confidence 45788888999999999988999986666443211 12234556678777666543
No 315
>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family. Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized.
Probab=47.09 E-value=2e+02 Score=25.33 Aligned_cols=54 Identities=28% Similarity=0.327 Sum_probs=35.0
Q ss_pred HcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE
Q 020805 62 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAE 118 (321)
Q Consensus 62 ~~g~~~~g~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~ 118 (321)
+.+.+.++...+|...+|..|.+++..++..|.+.+++.+. +.+.+.++.+|++
T Consensus 133 ~~~~~~~~~~vlv~g~~~~~g~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~ 186 (325)
T TIGR02824 133 QRGGLKAGETVLIHGGASGIGTTAIQLAKAFGARVFTTAGS---DEKCAACEALGAD 186 (325)
T ss_pred HhcCCCCCCEEEEEcCcchHHHHHHHHHHHcCCEEEEEeCC---HHHHHHHHHcCCc
Confidence 34556667666666667888888888888888876554332 3344455566653
No 316
>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo
Probab=46.80 E-value=1.4e+02 Score=27.68 Aligned_cols=55 Identities=20% Similarity=0.252 Sum_probs=37.6
Q ss_pred HcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEE
Q 020805 62 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAEL 119 (321)
Q Consensus 62 ~~g~~~~g~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v 119 (321)
+...+.+|...+| ...|..|.+++..|+.+|...++++ +....|.+.++.+|+..
T Consensus 170 ~~~~~~~g~~vlI-~g~g~vg~~~~~~a~~~G~~~vi~~--~~~~~~~~~~~~~g~~~ 224 (375)
T cd08282 170 ELAGVQPGDTVAV-FGAGPVGLMAAYSAILRGASRVYVV--DHVPERLDLAESIGAIP 224 (375)
T ss_pred HhcCCCCCCEEEE-ECCCHHHHHHHHHHHHcCCCEEEEE--CCCHHHHHHHHHcCCeE
Confidence 3344556655555 5668889999999999997544443 33567788888888753
No 317
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=46.79 E-value=1.8e+02 Score=26.54 Aligned_cols=48 Identities=19% Similarity=0.169 Sum_probs=31.5
Q ss_pred CCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE
Q 020805 68 PGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAE 118 (321)
Q Consensus 68 ~g~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~ 118 (321)
++.. |+...+|..|.+++..|+.+|.+.++++. .+..+...++.+|++
T Consensus 175 ~~~~-vlI~g~g~vg~~~~~~a~~~G~~~v~~~~--~~~~~~~~~~~~g~~ 222 (350)
T cd08240 175 ADEP-VVIIGAGGLGLMALALLKALGPANIIVVD--IDEAKLEAAKAAGAD 222 (350)
T ss_pred CCCE-EEEECCcHHHHHHHHHHHHcCCCeEEEEe--CCHHHHHHHHHhCCc
Confidence 4434 44446788888888889999886544443 235666677777764
No 318
>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional
Probab=46.76 E-value=1.6e+02 Score=27.62 Aligned_cols=52 Identities=19% Similarity=0.211 Sum_probs=34.9
Q ss_pred EEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCC
Q 020805 73 LIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 124 (321)
Q Consensus 73 vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~ 124 (321)
++..++|..|..+|..+-..+-.-.|++|..+-......+..+|+++++++-
T Consensus 51 ~v~~~sgt~al~lal~al~~~~Gd~Viv~~~~~~~~~~~~~~~G~~~v~vd~ 102 (379)
T PRK11658 51 AIAVSSATAGMHITLMALGIGPGDEVITPSLTWVSTLNMIVLLGATPVMVDV 102 (379)
T ss_pred EEEECCHHHHHHHHHHHcCCCCCCEEEECCCcHHHHHHHHHHcCCEEEEEec
Confidence 5556777766665554432223346778876666667788889999999974
No 319
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=46.68 E-value=1.8e+02 Score=26.48 Aligned_cols=56 Identities=21% Similarity=0.258 Sum_probs=35.4
Q ss_pred HHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEE
Q 020805 61 EAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAEL 119 (321)
Q Consensus 61 ~~~g~~~~g~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v 119 (321)
.+.+.+.+|...+|. .+|..|.+++..|+.+|.+.++++.. ++.+...++.+|++-
T Consensus 155 ~~~~~~~~g~~vlI~-g~g~vG~~a~~lak~~G~~~v~~~~~--~~~~~~~~~~~g~~~ 210 (343)
T cd05285 155 CRRAGVRPGDTVLVF-GAGPIGLLTAAVAKAFGATKVVVTDI--DPSRLEFAKELGATH 210 (343)
T ss_pred HHhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCcEEEEECC--CHHHHHHHHHcCCcE
Confidence 355667777666665 45777888888888888873333322 245556666666643
No 320
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=46.65 E-value=2.6e+02 Score=29.08 Aligned_cols=97 Identities=19% Similarity=0.117 Sum_probs=0.0
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE-eCCCCChhHHHHHHHHHHHhCCCeEEc
Q 020805 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL-TDPAKGMKGAVQKAEEILAKTPNAYML 148 (321)
Q Consensus 70 ~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~ 148 (321)
+..|+.-.+|-.|.+.|..+++.|++++||=.... .|..+.. .+.-.-..+..+.-.+..++.+-.+..
T Consensus 431 ~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~----------~GG~l~~gip~~rlp~~~~~~~~~~l~~~gv~~~~ 500 (752)
T PRK12778 431 GKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHE----------IGGVLKYGIPEFRLPKKIVDVEIENLKKLGVKFET 500 (752)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCC----------CCCeeeecCCCCCCCHHHHHHHHHHHHHCCCEEEC
Q ss_pred CCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCc
Q 020805 149 QQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTG 186 (321)
Q Consensus 149 ~~~~~~~~~~~g~~~~~~Ei~~ql~~~~d~vv~p~G~G 186 (321)
+. ..+......++.++- +|+||+++|+.
T Consensus 501 ~~-------~v~~~v~~~~l~~~~---ydavvlAtGa~ 528 (752)
T PRK12778 501 DV-------IVGKTITIEELEEEG---FKGIFIASGAG 528 (752)
T ss_pred CC-------EECCcCCHHHHhhcC---CCEEEEeCCCC
No 321
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=46.56 E-value=1.4e+02 Score=25.57 Aligned_cols=54 Identities=13% Similarity=0.222 Sum_probs=36.4
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHH-HHHHHHcCCEEEEeCC
Q 020805 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLER-RIILRAFGAELVLTDP 124 (321)
Q Consensus 71 ~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~-~~~~~~~Ga~v~~~~~ 124 (321)
..+|+..+|--|.+++......|.+++++........+ ...++..+.++..+..
T Consensus 3 ~vlItGa~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 57 (255)
T TIGR01963 3 TALVTGAASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATDAGGSVIYLVA 57 (255)
T ss_pred EEEEcCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEC
Confidence 56888888999999999988889987777554322222 2233455677766554
No 322
>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=46.52 E-value=1.7e+02 Score=27.70 Aligned_cols=55 Identities=20% Similarity=0.189 Sum_probs=46.3
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCC
Q 020805 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPA 125 (321)
Q Consensus 71 ~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~ 125 (321)
+..+..+||-.+..+|+-+-..|=.-.|++|.-+-......+...||+.++++-+
T Consensus 50 k~ava~~sgT~AL~laL~al~ig~GDeVI~ps~TfvATan~i~~~Ga~PVFvDid 104 (374)
T COG0399 50 KYAVAVSSGTAALHLALLALAIGPGDEVIVPSFTFVATANAVLLVGAKPVFVDID 104 (374)
T ss_pred CeEEEecChHHHHHHHHHhcCCCCCCEEEecCCchHHHHHHHHHcCCeEEEEecC
Confidence 5678788888888888875557777789999999889999999999999999864
No 323
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=46.47 E-value=1.5e+02 Score=28.75 Aligned_cols=78 Identities=15% Similarity=0.186 Sum_probs=46.5
Q ss_pred EEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHH----HHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEc
Q 020805 73 LIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRI----ILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYML 148 (321)
Q Consensus 73 vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~----~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 148 (321)
.+..+||-.+..++..+- ++-.-.|++|...-..... .++.+|+++.+++...+.++ . ++....+....|+
T Consensus 79 av~~~SG~aAi~~al~al-l~~GD~VI~~~~~Y~~T~~~~~~~l~~~Gi~v~~vd~~~d~~~-l---~~~I~~~Tk~I~~ 153 (432)
T PRK06702 79 AVATASGQAAIMLAVLNI-CSSGDHLLCSSTVYGGTFNLFGVSLRKLGIDVTFFNPNLTADE-I---VALANDKTKLVYA 153 (432)
T ss_pred EEEECCHHHHHHHHHHHh-cCCCCEEEECCCchHHHHHHHHHHHHHCCCEEEEECCCCCHHH-H---HHhCCcCCeEEEE
Confidence 566788888888777653 4444567777765432233 26889999999986322222 2 2222233356676
Q ss_pred CCCCCCc
Q 020805 149 QQFENPA 155 (321)
Q Consensus 149 ~~~~~~~ 155 (321)
+...||.
T Consensus 154 e~pgnP~ 160 (432)
T PRK06702 154 ESLGNPA 160 (432)
T ss_pred EcCCCcc
Confidence 6666665
No 324
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=46.23 E-value=2.2e+02 Score=26.32 Aligned_cols=54 Identities=19% Similarity=0.273 Sum_probs=38.0
Q ss_pred HcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE
Q 020805 62 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAE 118 (321)
Q Consensus 62 ~~g~~~~g~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~ 118 (321)
+...+.+|...+|. .+|..|.+++..|+.+|.+.++.+.. ++.+.+.++.+|++
T Consensus 177 ~~~~~~~g~~vlI~-g~g~vG~~a~~~a~~~G~~~v~~~~~--~~~~~~~~~~~g~~ 230 (365)
T cd05279 177 NTAKVTPGSTCAVF-GLGGVGLSVIMGCKAAGASRIIAVDI--NKDKFEKAKQLGAT 230 (365)
T ss_pred hccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEeC--CHHHHHHHHHhCCC
Confidence 34456677665564 67899999999999999875555432 45667777888874
No 325
>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases. Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so
Probab=46.21 E-value=1.7e+02 Score=26.07 Aligned_cols=47 Identities=23% Similarity=0.289 Sum_probs=33.1
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 020805 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 120 (321)
Q Consensus 71 ~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~ 120 (321)
..+|...+|..|.+++..|+.+|.+.+++.+ ++.+.+.++.+|++-+
T Consensus 149 ~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~~~ 195 (325)
T cd05280 149 PVLVTGATGGVGSIAVAILAKLGYTVVALTG---KEEQADYLKSLGASEV 195 (325)
T ss_pred EEEEECCccHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHhcCCcEE
Confidence 4455555689999999999999998544433 3456777778887543
No 326
>PRK15481 transcriptional regulatory protein PtsJ; Provisional
Probab=46.15 E-value=2.7e+02 Score=26.49 Aligned_cols=51 Identities=12% Similarity=-0.038 Sum_probs=33.5
Q ss_pred EEEeeCCChHHHHHHHHHHH-cCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCC
Q 020805 72 VLIEPTSGNTGIGLAFMAAA-KQYRLIITMPASMSLERRIILRAFGAELVLTDP 124 (321)
Q Consensus 72 ~vv~~SsGN~g~AlA~aa~~-~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~ 124 (321)
.|+..+++..+..++..+-. -| =.|+++.-+-..-...++.+|++++.++-
T Consensus 143 ~Iiit~G~~~al~~~~~~l~~pg--d~Vlv~~P~y~~~~~~~~~~g~~~~~v~~ 194 (431)
T PRK15481 143 EIDLTSGAIDAIERLLCAHLLPG--DSVAVEDPCFLSSINMLRYAGFSASPVSV 194 (431)
T ss_pred eEEEecCcHHHHHHHHHHhCCCC--CEEEEeCCCcHHHHHHHHHcCCeEEeecc
Confidence 47777778887766655422 23 23455554445557788899999998875
No 327
>PRK10490 sensor protein KdpD; Provisional
Probab=46.12 E-value=3.1e+02 Score=29.30 Aligned_cols=107 Identities=9% Similarity=0.024 Sum_probs=61.7
Q ss_pred eEEEeeCCChHH----HHHHHHHHHcCCeEEEEecCC-----CCH-------HHHHHHHHcCCEEEEeCCCCChhHHHHH
Q 020805 71 SVLIEPTSGNTG----IGLAFMAAAKQYRLIITMPAS-----MSL-------ERRIILRAFGAELVLTDPAKGMKGAVQK 134 (321)
Q Consensus 71 ~~vv~~SsGN~g----~AlA~aa~~~G~~~~ivvp~~-----~~~-------~~~~~~~~~Ga~v~~~~~~~~~~~~~~~ 134 (321)
+.+|+-|++-++ +..+-.|.+++-+.+++.=+. .+. ..++..+.+||+++.+.+. +..+.
T Consensus 252 riLV~v~~~~~~~~lIr~~~rlA~~~~a~~~~l~V~~~~~~~~~~~~~~~l~~~~~lA~~lGa~~~~~~~~----dva~~ 327 (895)
T PRK10490 252 AILLCIGHNTGSEKLVRTAARLAARLGSVWHAVYVETPRLHRLPEKKRRAILSALRLAQELGAETATLSDP----AEEKA 327 (895)
T ss_pred eEEEEECCCcchHHHHHHHHHHHHhcCCCEEEEEEecCCcCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCC----CHHHH
Confidence 456666666555 334456777888877554221 111 2245668899999888763 23344
Q ss_pred HHHHHHhCC-CeEEcCCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecC
Q 020805 135 AEEILAKTP-NAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIG 184 (321)
Q Consensus 135 a~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~Ei~~ql~~~~d~vv~p~G 184 (321)
..+++++.+ ....+.+...+ .+ ...+.+...+++.. +++|..++|..
T Consensus 328 i~~~A~~~~vt~IViG~s~~~-~~-~~~~s~~~~l~r~~-~~idi~iv~~~ 375 (895)
T PRK10490 328 VLRYAREHNLGKIIIGRRASR-RW-WRRESFADRLARLG-PDLDLVIVALD 375 (895)
T ss_pred HHHHHHHhCCCEEEECCCCCC-CC-ccCCCHHHHHHHhC-CCCCEEEEeCC
Confidence 445666653 33444443222 12 22346777888887 57888888644
No 328
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=45.95 E-value=1.5e+02 Score=25.65 Aligned_cols=55 Identities=9% Similarity=0.088 Sum_probs=36.5
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCH-HHHHHHHHcCCEEEEeCC
Q 020805 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSL-ERRIILRAFGAELVLTDP 124 (321)
Q Consensus 70 ~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~-~~~~~~~~~Ga~v~~~~~ 124 (321)
...+|+..+|.-|.++|......|.+++++.+..... .-...++..|.++..+..
T Consensus 12 k~vlVtG~s~gIG~~la~~l~~~G~~vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~ 67 (255)
T PRK06113 12 KCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRC 67 (255)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEc
Confidence 3678888888999999998888999877765432211 112344556777665543
No 329
>PRK09072 short chain dehydrogenase; Provisional
Probab=45.93 E-value=1.4e+02 Score=25.92 Aligned_cols=33 Identities=33% Similarity=0.358 Sum_probs=27.0
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecC
Q 020805 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPA 102 (321)
Q Consensus 70 ~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~ 102 (321)
...+|+.++|-.|.++|......|.+++++...
T Consensus 6 ~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~ 38 (263)
T PRK09072 6 KRVLLTGASGGIGQALAEALAAAGARLLLVGRN 38 (263)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEECC
Confidence 367888888999999999988899987776543
No 330
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=45.80 E-value=1.3e+02 Score=27.59 Aligned_cols=46 Identities=22% Similarity=0.224 Sum_probs=33.9
Q ss_pred CChHHHHHHHHHHHcCCeEEEEecCCCC--HHHHHH-HHHcCCEEEEeC
Q 020805 78 SGNTGIGLAFMAAAKQYRLIITMPASMS--LERRII-LRAFGAELVLTD 123 (321)
Q Consensus 78 sGN~g~AlA~aa~~~G~~~~ivvp~~~~--~~~~~~-~~~~Ga~v~~~~ 123 (321)
.+|.+.+++.+++++|++++++.|+... ...++. .+..|.++....
T Consensus 161 ~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~g~~~~~~~ 209 (304)
T PRK00779 161 GNNVANSLLLAAALLGFDLRVATPKGYEPDPEIVEKIAKETGASIEVTH 209 (304)
T ss_pred CCccHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHcCCeEEEEc
Confidence 3789999999999999999999998632 233333 466788887665
No 331
>PRK06483 dihydromonapterin reductase; Provisional
Probab=45.62 E-value=1.9e+02 Score=24.57 Aligned_cols=67 Identities=21% Similarity=0.247 Sum_probs=43.8
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHH
Q 020805 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILA 140 (321)
Q Consensus 71 ~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~ 140 (321)
..+|+..+|--|.++|......|.+++++-.... ...+.++..|++.+.++-. +.++..+...+..+
T Consensus 4 ~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~--~~~~~~~~~~~~~~~~D~~-~~~~~~~~~~~~~~ 70 (236)
T PRK06483 4 PILITGAGQRIGLALAWHLLAQGQPVIVSYRTHY--PAIDGLRQAGAQCIQADFS-TNAGIMAFIDELKQ 70 (236)
T ss_pred eEEEECCCChHHHHHHHHHHHCCCeEEEEeCCch--hHHHHHHHcCCEEEEcCCC-CHHHHHHHHHHHHh
Confidence 5688888899999999998888998877654332 2345556678777666642 23344444444443
No 332
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=45.60 E-value=2e+02 Score=25.02 Aligned_cols=71 Identities=14% Similarity=0.074 Sum_probs=39.4
Q ss_pred eEEEeeCC--ChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHH-HHc-CCEEEEeCCCC-ChhHHHHHHHHHHHh
Q 020805 71 SVLIEPTS--GNTGIGLAFMAAAKQYRLIITMPASMSLERRIIL-RAF-GAELVLTDPAK-GMKGAVQKAEEILAK 141 (321)
Q Consensus 71 ~~vv~~Ss--GN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~-~~~-Ga~v~~~~~~~-~~~~~~~~a~~~~~~ 141 (321)
..+|+..+ +.-|.++|..-.+.|.++++.-.......+++.+ +.. |.++..+..+- +.++..+...+..++
T Consensus 9 ~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 84 (257)
T PRK08594 9 TYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADTLEGQESLLLPCDVTSDEEITACFETIKEE 84 (257)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHHHHHh
Confidence 55777754 6788999999888999877654322223334333 222 45555443322 233444445555444
No 333
>PRK07774 short chain dehydrogenase; Provisional
Probab=45.51 E-value=1.8e+02 Score=24.78 Aligned_cols=53 Identities=11% Similarity=0.096 Sum_probs=35.1
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCH-HHHHHHHHcCCEEEEeC
Q 020805 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSL-ERRIILRAFGAELVLTD 123 (321)
Q Consensus 71 ~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~-~~~~~~~~~Ga~v~~~~ 123 (321)
..+|+..+|--|.++|......|.+++++-...... ...+.++..+.++..+.
T Consensus 8 ~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~ 61 (250)
T PRK07774 8 VAIVTGAAGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVADGGTAIAVQ 61 (250)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEE
Confidence 678888889999999999888999887775442221 11233444455655443
No 334
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=45.46 E-value=1.7e+02 Score=26.58 Aligned_cols=52 Identities=17% Similarity=0.135 Sum_probs=35.6
Q ss_pred CCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q 020805 66 ITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 121 (321)
Q Consensus 66 ~~~g~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~ 121 (321)
+++|...+|. ..|..|.+++..|+.+|++.+++.+. ..+.+.++.+|++-++
T Consensus 167 ~~~g~~vlV~-g~g~vG~~~~~~a~~~G~~v~~~~~~---~~~~~~~~~~g~~~vi 218 (337)
T cd05283 167 VGPGKRVGVV-GIGGLGHLAVKFAKALGAEVTAFSRS---PSKKEDALKLGADEFI 218 (337)
T ss_pred CCCCCEEEEE-CCcHHHHHHHHHHHHcCCeEEEEcCC---HHHHHHHHHcCCcEEe
Confidence 5666666664 46889999999999999875555332 3556666778865443
No 335
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=45.45 E-value=62 Score=30.99 Aligned_cols=91 Identities=18% Similarity=0.212 Sum_probs=54.3
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEcCC
Q 020805 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQ 150 (321)
Q Consensus 71 ~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 150 (321)
++|+....|+-|+.+|..++.+|.+++++ ..+ +.+.......|.++. . .++ ..+.. +.++...
T Consensus 196 k~VvViG~G~IG~~vA~~ak~~Ga~ViV~-d~d--p~r~~~A~~~G~~v~--~----lee-------al~~a-DVVItaT 258 (406)
T TIGR00936 196 KTVVVAGYGWCGKGIAMRARGMGARVIVT-EVD--PIRALEAAMDGFRVM--T----MEE-------AAKIG-DIFITAT 258 (406)
T ss_pred CEEEEECCCHHHHHHHHHHhhCcCEEEEE-eCC--hhhHHHHHhcCCEeC--C----HHH-------HHhcC-CEEEECC
Confidence 57888999999999999999999986554 222 234444555677553 1 111 11222 3333211
Q ss_pred CCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchh
Q 020805 151 FENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGT 188 (321)
Q Consensus 151 ~~~~~~~~~g~~~~~~Ei~~ql~~~~d~vv~p~G~Gg~ 188 (321)
. ....+..+.++.+ ++..+++-+|.+..
T Consensus 259 -G-------~~~vI~~~~~~~m--K~GailiN~G~~~~ 286 (406)
T TIGR00936 259 -G-------NKDVIRGEHFENM--KDGAIVANIGHFDV 286 (406)
T ss_pred -C-------CHHHHHHHHHhcC--CCCcEEEEECCCCc
Confidence 1 1223444566666 45678888887765
No 336
>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members. Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=45.44 E-value=2.3e+02 Score=25.43 Aligned_cols=52 Identities=29% Similarity=0.409 Sum_probs=35.3
Q ss_pred CCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE
Q 020805 64 GLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAE 118 (321)
Q Consensus 64 g~~~~g~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~ 118 (321)
+.+.+|...+|...+|-.|.+++..|+.+|.+.+++.. +..+.+.++.+|++
T Consensus 135 ~~~~~~~~vlI~ga~g~ig~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~ 186 (329)
T cd08250 135 GEMKSGETVLVTAAAGGTGQFAVQLAKLAGCHVIGTCS---SDEKAEFLKSLGCD 186 (329)
T ss_pred cCCCCCCEEEEEeCccHHHHHHHHHHHHcCCeEEEEeC---cHHHHHHHHHcCCc
Confidence 45666766666666788888888889988887555432 23455566667763
No 337
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=45.39 E-value=2.1e+02 Score=24.99 Aligned_cols=113 Identities=12% Similarity=0.007 Sum_probs=59.3
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHH----------------HcCCEEEEeCCCCChhHHHHH
Q 020805 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILR----------------AFGAELVLTDPAKGMKGAVQK 134 (321)
Q Consensus 71 ~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~----------------~~Ga~v~~~~~~~~~~~~~~~ 134 (321)
+.|+...+|.-|..=+..-...|-+++|+-|+-.+... .+. ..|+.+++...+ ..+..+.
T Consensus 26 ~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el~--~l~~~~~i~~~~r~~~~~dl~g~~LViaATd--D~~vN~~ 101 (223)
T PRK05562 26 IKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEFL--DLKKYGNLKLIKGNYDKEFIKDKHLIVIATD--DEKLNNK 101 (223)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHHH--HHHhCCCEEEEeCCCChHHhCCCcEEEECCC--CHHHHHH
Confidence 34666777877655555555678888888887654422 121 235555555432 1334444
Q ss_pred HHHHHHhCCCeEEcCCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHHh
Q 020805 135 AEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKE 198 (321)
Q Consensus 135 a~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~Ei~~ql~~~~d~vv~p~G~Gg~~aGi~~~~k~ 198 (321)
..+.+++...++. --++|.. + ..+.+-+. .-+-+.++++|||..-.+++.+|.
T Consensus 102 I~~~a~~~~~lvn--~vd~p~~---~-dFi~PAiv-----~rg~l~IaIST~G~sP~lar~lR~ 154 (223)
T PRK05562 102 IRKHCDRLYKLYI--DCSDYKK---G-LCIIPYQR-----STKNFVFALNTKGGSPKTSVFIGE 154 (223)
T ss_pred HHHHHHHcCCeEE--EcCCccc---C-eEEeeeEE-----ecCCEEEEEECCCcCcHHHHHHHH
Confidence 5555555422222 2223322 0 11111111 124478888888887777877775
No 338
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=45.33 E-value=1.4e+02 Score=27.38 Aligned_cols=112 Identities=18% Similarity=0.125 Sum_probs=72.7
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEcC
Q 020805 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQ 149 (321)
Q Consensus 70 ~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 149 (321)
+++|..-.-|+-|+++|..++.+|++++.+=|..... ..+.+ .+ + ..++.++. +...++
T Consensus 145 gktvGIiG~G~IG~~vA~~~~~fgm~V~~~d~~~~~~-------~~~~~--~~----~-------l~ell~~s-Dvv~lh 203 (311)
T PRK08410 145 GKKWGIIGLGTIGKRVAKIAQAFGAKVVYYSTSGKNK-------NEEYE--RV----S-------LEELLKTS-DIISIH 203 (311)
T ss_pred CCEEEEECCCHHHHHHHHHHhhcCCEEEEECCCcccc-------ccCce--ee----c-------HHHHhhcC-CEEEEe
Confidence 3567777889999999999999999988775532110 01111 11 1 22344443 555544
Q ss_pred CCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhH--HHHHHHHHhcCCCcEEEEEecC
Q 020805 150 QFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTI--TGAGKFLKEKNPNIKLYGIEPT 211 (321)
Q Consensus 150 ~~~~~~~~~~g~~~~~~Ei~~ql~~~~d~vv~p~G~Gg~~--aGi~~~~k~~~~~~~vigv~~~ 211 (321)
---++ +-..-+..|.++++ +++.+++-+|-|+.+ ..+..+++. ..+. .+.++.
T Consensus 204 ~Plt~----~T~~li~~~~~~~M--k~~a~lIN~aRG~vVDe~AL~~AL~~--g~i~-AaLDV~ 258 (311)
T PRK08410 204 APLNE----KTKNLIAYKELKLL--KDGAILINVGRGGIVNEKDLAKALDE--KDIY-AGLDVL 258 (311)
T ss_pred CCCCc----hhhcccCHHHHHhC--CCCeEEEECCCccccCHHHHHHHHHc--CCeE-EEEecC
Confidence 32222 23466788889998 589999999999998 677778774 3456 666643
No 339
>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B ....
Probab=45.26 E-value=80 Score=27.18 Aligned_cols=71 Identities=25% Similarity=0.284 Sum_probs=0.0
Q ss_pred HHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEcCCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCc
Q 020805 110 IILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTG 186 (321)
Q Consensus 110 ~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~Ei~~ql~~~~d~vv~p~G~G 186 (321)
+.+...|++|+.++. +.........++.++.+..++.-...++.. ...+..++.++.++.+|.+|..+|..
T Consensus 14 ~~l~~~Ga~V~~~~~--~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~----v~~~~~~~~~~~~g~iD~lV~~a~~~ 84 (241)
T PF13561_consen 14 RALAEEGANVILTDR--NEEKLADALEELAKEYGAEVIQCDLSDEES----VEALFDEAVERFGGRIDILVNNAGIS 84 (241)
T ss_dssp HHHHHTTEEEEEEES--SHHHHHHHHHHHHHHTTSEEEESCTTSHHH----HHHHHHHHHHHHCSSESEEEEEEESC
T ss_pred HHHHHCCCEEEEEeC--ChHHHHHHHHHHHHHcCCceEeecCcchHH----HHHHHHHHHhhcCCCeEEEEeccccc
No 340
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=45.24 E-value=1.3e+02 Score=28.52 Aligned_cols=89 Identities=15% Similarity=0.193 Sum_probs=41.7
Q ss_pred CeEEEEecCCCCHHHHHHHHHcCC-EEEEeCCCCCh--hHHHHHHHHHHHhCCCeE-EcCC-CCCCcchhhhhhchHHHH
Q 020805 94 YRLIITMPASMSLERRIILRAFGA-ELVLTDPAKGM--KGAVQKAEEILAKTPNAY-MLQQ-FENPANPKIHYETTGPEL 168 (321)
Q Consensus 94 ~~~~ivvp~~~~~~~~~~~~~~Ga-~v~~~~~~~~~--~~~~~~a~~~~~~~~~~~-~~~~-~~~~~~~~~g~~~~~~Ei 168 (321)
.|..|+.-.+.-..--+.++.+|. ++.++.+. +. ....+...+..++.+-.+ +.+. -.||.. -...-+.|+
T Consensus 8 ~p~~i~~G~g~~~~l~~~~~~~g~~~~livt~~-~~~~~g~~~~v~~~L~~~~i~~~~f~~v~~np~~---~~v~~~~~~ 83 (383)
T PRK09860 8 IPSVNVIGADSLTDAMNMMADYGFTRTLIVTDN-MLTKLGMAGDVQKALEERNIFSVIYDGTQPNPTT---ENVAAGLKL 83 (383)
T ss_pred cCCeEEECcCHHHHHHHHHHhcCCCEEEEEcCc-chhhCccHHHHHHHHHHcCCeEEEeCCCCCCcCH---HHHHHHHHH
Confidence 455555555544444456777784 55555432 11 122333444444332112 1111 113322 122233455
Q ss_pred HhhhCCCCCEEEEecCCchhH
Q 020805 169 WKGSGGRIDALVSGIGTGGTI 189 (321)
Q Consensus 169 ~~ql~~~~d~vv~p~G~Gg~~ 189 (321)
.++. ++| +|+++|+|+.+
T Consensus 84 ~~~~--~~D-~IiaiGGGS~i 101 (383)
T PRK09860 84 LKEN--NCD-SVISLGGGSPH 101 (383)
T ss_pred HHHc--CCC-EEEEeCCchHH
Confidence 5553 578 57788888766
No 341
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=45.09 E-value=1.9e+02 Score=25.08 Aligned_cols=69 Identities=16% Similarity=0.124 Sum_probs=41.2
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHH-HcCCEEEEeCCCC-ChhHHHHHHHHHHHh
Q 020805 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILR-AFGAELVLTDPAK-GMKGAVQKAEEILAK 141 (321)
Q Consensus 70 ~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~-~~Ga~v~~~~~~~-~~~~~~~~a~~~~~~ 141 (321)
...+|+..+|.-|.++|......|.+++++-.. ..+.+.+. .++.++..+..+- +.+...+...+..++
T Consensus 6 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~---~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 76 (262)
T TIGR03325 6 EVVLVTGGASGLGRAIVDRFVAEGARVAVLDKS---AAGLQELEAAHGDAVVGVEGDVRSLDDHKEAVARCVAA 76 (262)
T ss_pred cEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHhhcCCceEEEEeccCCHHHHHHHHHHHHHH
Confidence 367888888999999999999999987766322 23333333 3465665554332 223333444444433
No 342
>KOG1176 consensus Acyl-CoA synthetase [Lipid transport and metabolism]
Probab=45.06 E-value=2.2e+02 Score=28.49 Aligned_cols=60 Identities=20% Similarity=0.125 Sum_probs=47.5
Q ss_pred CCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCC
Q 020805 66 ITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPA 125 (321)
Q Consensus 66 ~~~g~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~ 125 (321)
++.|....+.+...-+-..++++|-..|....-+=|..++.+...+++...+++++++..
T Consensus 69 i~~gDvV~i~~pNs~~~~~~~la~~~~Ga~~~~~Np~~~~~ei~~~~~~s~~kiif~d~~ 128 (537)
T KOG1176|consen 69 IKKGDVVGILAPNTPEFVELALAVPMAGAVLNPLNPRLTASEIAKQLKDSKPKLIFVDED 128 (537)
T ss_pred CCCCCEEEEEcCCCHHHHHHHHHHHHcCccccccCcccCHHHHHHHHHhcCCeEEEEcCc
Confidence 344434344444455668888899999999999999989999999999999999999964
No 343
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=45.03 E-value=1.8e+02 Score=24.69 Aligned_cols=55 Identities=15% Similarity=0.213 Sum_probs=36.1
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCH--HHHHHHHHcCCEEEEeCCC
Q 020805 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSL--ERRIILRAFGAELVLTDPA 125 (321)
Q Consensus 71 ~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~--~~~~~~~~~Ga~v~~~~~~ 125 (321)
..+|+..+|.-|.++|......|.++++++..+... ...+.+...+.++..+..+
T Consensus 7 ~ilI~Gasg~iG~~la~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D 63 (247)
T PRK05565 7 VAIVTGASGGIGRAIAELLAKEGAKVVIAYDINEEAAQELLEEIKEEGGDAIAVKAD 63 (247)
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEECC
Confidence 568888889999999998888899877763333221 1223344456677666543
No 344
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=44.92 E-value=99 Score=23.31 Aligned_cols=93 Identities=23% Similarity=0.148 Sum_probs=52.6
Q ss_pred HHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCC--CCChhHHHHHHHHHHHhCCCeEEcCCCCCCcchhhh
Q 020805 83 IGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP--AKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIH 160 (321)
Q Consensus 83 ~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g 160 (321)
..+|.+.++.|+++.++=.......-.+.++.+..+++.+.. ...+....+.++...+..++...+ ..|
T Consensus 18 ~~la~~l~~~G~~v~~~d~~~~~~~l~~~~~~~~pd~V~iS~~~~~~~~~~~~l~~~~k~~~p~~~iv---------~GG 88 (121)
T PF02310_consen 18 LYLAAYLRKAGHEVDILDANVPPEELVEALRAERPDVVGISVSMTPNLPEAKRLARAIKERNPNIPIV---------VGG 88 (121)
T ss_dssp HHHHHHHHHTTBEEEEEESSB-HHHHHHHHHHTTCSEEEEEESSSTHHHHHHHHHHHHHTTCTTSEEE---------EEE
T ss_pred HHHHHHHHHCCCeEEEECCCCCHHHHHHHHhcCCCcEEEEEccCcCcHHHHHHHHHHHHhcCCCCEEE---------EEC
Confidence 456667788899888773333335556778888999987764 223444555555543333332221 233
Q ss_pred -hhchHHH-HHhhhCCCCCEEEEecCC
Q 020805 161 -YETTGPE-LWKGSGGRIDALVSGIGT 185 (321)
Q Consensus 161 -~~~~~~E-i~~ql~~~~d~vv~p~G~ 185 (321)
+.+..+| +++.. ..+|+++..=|-
T Consensus 89 ~~~t~~~~~~l~~~-~~~D~vv~GegE 114 (121)
T PF02310_consen 89 PHATADPEEILREY-PGIDYVVRGEGE 114 (121)
T ss_dssp SSSGHHHHHHHHHH-HTSEEEEEETTS
T ss_pred CchhcChHHHhccC-cCcceecCCChH
Confidence 2344444 44432 357888876654
No 345
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=44.92 E-value=89 Score=24.70 Aligned_cols=46 Identities=15% Similarity=0.094 Sum_probs=34.7
Q ss_pred EeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeC
Q 020805 74 IEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTD 123 (321)
Q Consensus 74 v~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~ 123 (321)
.....|+-|.-+|+.-++.|.+++++.... +.+.++..|-.+....
T Consensus 2 ~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~----~~~~~~~~g~~~~~~~ 47 (151)
T PF02558_consen 2 LIIGAGAIGSLYAARLAQAGHDVTLVSRSP----RLEAIKEQGLTITGPD 47 (151)
T ss_dssp EEESTSHHHHHHHHHHHHTTCEEEEEESHH----HHHHHHHHCEEEEETT
T ss_pred EEECcCHHHHHHHHHHHHCCCceEEEEccc----cHHhhhheeEEEEecc
Confidence 346789999999999888999988886544 4555777786665544
No 346
>PRK07985 oxidoreductase; Provisional
Probab=44.89 E-value=1.7e+02 Score=26.24 Aligned_cols=72 Identities=17% Similarity=0.092 Sum_probs=42.9
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC---HHHHHHHHHcCCEEEEeCCCC-ChhHHHHHHHHHHHh
Q 020805 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS---LERRIILRAFGAELVLTDPAK-GMKGAVQKAEEILAK 141 (321)
Q Consensus 70 ~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~---~~~~~~~~~~Ga~v~~~~~~~-~~~~~~~~a~~~~~~ 141 (321)
...+|+..+|.-|.++|......|.++++.-..... ....+.++..|.+++.+..+. +.++..+...+..+.
T Consensus 50 k~vlITGas~gIG~aia~~L~~~G~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 125 (294)
T PRK07985 50 RKALVTGGDSGIGRAAAIAYAREGADVAISYLPVEEEDAQDVKKIIEECGRKAVLLPGDLSDEKFARSLVHEAHKA 125 (294)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCCCEEEEecCCcchhhHHHHHHHHHHcCCeEEEEEccCCCHHHHHHHHHHHHHH
Confidence 367888888999999999988999988765432211 112223455677776554332 223333444444433
No 347
>PRK07832 short chain dehydrogenase; Provisional
Probab=44.86 E-value=2.1e+02 Score=24.97 Aligned_cols=31 Identities=19% Similarity=0.216 Sum_probs=24.4
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEec
Q 020805 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMP 101 (321)
Q Consensus 71 ~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp 101 (321)
..+|+..+|.-|.++|......|.+++++-.
T Consensus 2 ~vlItGas~giG~~la~~la~~G~~vv~~~r 32 (272)
T PRK07832 2 RCFVTGAASGIGRATALRLAAQGAELFLTDR 32 (272)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEeC
Confidence 3578888889999999988888988665543
No 348
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=44.81 E-value=99 Score=30.08 Aligned_cols=77 Identities=19% Similarity=0.070 Sum_probs=50.7
Q ss_pred CCchhhHHHHHHHHH-HHHcCC---C---CCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCC-------------
Q 020805 45 CSSVKDRIGYSMISD-AEAKGL---I---TPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM------------- 104 (321)
Q Consensus 45 tGS~K~R~a~~~l~~-a~~~g~---~---~~g~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~------------- 104 (321)
.++..+|...-.+.+ +.+.+. . .+....|+.-.+|..|.+.|..+++.|.++++|-....
T Consensus 111 ~~~v~i~~l~r~~~~~~~~~~~~~~~~~~~~~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~~gip~~~ 190 (471)
T PRK12810 111 FGPVTIKNIERYIIDKAFEEGWVKPDPPVKRTGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLRYGIPDFK 190 (471)
T ss_pred CCCccHHHHHHHHHHHHHHcCCCCCCCCcCCCCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceeeecCCccc
Confidence 346677766555543 233331 1 01124688889999999999999999999999864321
Q ss_pred -C----HHHHHHHHHcCCEEEE
Q 020805 105 -S----LERRIILRAFGAELVL 121 (321)
Q Consensus 105 -~----~~~~~~~~~~Ga~v~~ 121 (321)
+ ...++.++.+|.+++.
T Consensus 191 ~~~~~~~~~~~~~~~~gv~~~~ 212 (471)
T PRK12810 191 LEKEVIDRRIELMEAEGIEFRT 212 (471)
T ss_pred CCHHHHHHHHHHHHhCCcEEEe
Confidence 1 1245677889988864
No 349
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=44.80 E-value=1.3e+02 Score=28.62 Aligned_cols=32 Identities=16% Similarity=0.292 Sum_probs=16.7
Q ss_pred CCeEEEEecCCCCHHHHHHHHHcCCEEEEeCC
Q 020805 93 QYRLIITMPASMSLERRIILRAFGAELVLTDP 124 (321)
Q Consensus 93 G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~ 124 (321)
|=++.++.-..-...-.+.++.||++++.+..
T Consensus 80 gdkVLv~~nG~FG~R~~~ia~~~g~~v~~~~~ 111 (383)
T COG0075 80 GDKVLVVVNGKFGERFAEIAERYGAEVVVLEV 111 (383)
T ss_pred CCeEEEEeCChHHHHHHHHHHHhCCceEEEeC
Confidence 44555554444444445555666666655543
No 350
>PRK08017 oxidoreductase; Provisional
Probab=44.64 E-value=2e+02 Score=24.63 Aligned_cols=51 Identities=24% Similarity=0.308 Sum_probs=37.6
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCC
Q 020805 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 124 (321)
Q Consensus 71 ~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~ 124 (321)
..+|+..+|.-|.++|......|.+++++... ..+.+.++..|.+.+.++-
T Consensus 4 ~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~---~~~~~~~~~~~~~~~~~D~ 54 (256)
T PRK08017 4 SVLITGCSSGIGLEAALELKRRGYRVLAACRK---PDDVARMNSLGFTGILLDL 54 (256)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCC---HHHhHHHHhCCCeEEEeec
Confidence 46788888999999999988889987665433 3455566667887776664
No 351
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=44.55 E-value=2.2e+02 Score=24.96 Aligned_cols=53 Identities=32% Similarity=0.408 Sum_probs=34.0
Q ss_pred cCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE
Q 020805 63 KGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAE 118 (321)
Q Consensus 63 ~g~~~~g~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~ 118 (321)
.+.+.+|...+|...+|..|.+++..++.+|.+.+++. .+..+.+.++.+|++
T Consensus 131 ~~~~~~g~~vlI~g~~g~~g~~~~~~a~~~g~~v~~~~---~~~~~~~~~~~~g~~ 183 (320)
T cd05286 131 TYPVKPGDTVLVHAAAGGVGLLLTQWAKALGATVIGTV---SSEEKAELARAAGAD 183 (320)
T ss_pred hcCCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEc---CCHHHHHHHHHCCCC
Confidence 34455665655555578888888888888888755442 234555566666653
No 352
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=44.30 E-value=1.5e+02 Score=26.87 Aligned_cols=55 Identities=20% Similarity=0.224 Sum_probs=35.5
Q ss_pred HcCCCCCCCeEEEeeCCChHHHHHHHHHHH-cCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 020805 62 AKGLITPGESVLIEPTSGNTGIGLAFMAAA-KQYRLIITMPASMSLERRIILRAFGAELV 120 (321)
Q Consensus 62 ~~g~~~~g~~~vv~~SsGN~g~AlA~aa~~-~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~ 120 (321)
+...+++|...+|.. +|-.|.+++..|+. .|.+.+.+. .++.+.+.++.+|++.+
T Consensus 156 ~~~~~~~g~~vlV~g-~g~vG~~~~~la~~~~g~~v~~~~---~~~~~~~~~~~~g~~~v 211 (338)
T PRK09422 156 KVSGIKPGQWIAIYG-AGGLGNLALQYAKNVFNAKVIAVD---INDDKLALAKEVGADLT 211 (338)
T ss_pred HhcCCCCCCEEEEEC-CcHHHHHHHHHHHHhCCCeEEEEe---CChHHHHHHHHcCCcEE
Confidence 344466665655655 68888888888887 488755543 23456777777887544
No 353
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=44.23 E-value=1.1e+02 Score=28.74 Aligned_cols=90 Identities=19% Similarity=0.178 Sum_probs=42.0
Q ss_pred CCeEEEEecCCCCHHHHHHHHHcCC-EEEEeCCCCChh-HHHHHHHHHHHhCCCeE-EcCCC-CCCcchhhhhhchHHHH
Q 020805 93 QYRLIITMPASMSLERRIILRAFGA-ELVLTDPAKGMK-GAVQKAEEILAKTPNAY-MLQQF-ENPANPKIHYETTGPEL 168 (321)
Q Consensus 93 G~~~~ivvp~~~~~~~~~~~~~~Ga-~v~~~~~~~~~~-~~~~~a~~~~~~~~~~~-~~~~~-~~~~~~~~g~~~~~~Ei 168 (321)
-+|..|+.-.+.-..--+.++.+|. ++.++.+..... ...+...+..++.+-.+ ..+.. .||.. ....++
T Consensus 4 ~~p~~i~~G~g~l~~l~~~l~~~g~~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~f~~v~~~p~~------~~v~~~ 77 (377)
T cd08176 4 YLPPTNLFGAGAIKEIGDELKNLGFKKALIVTDKGLVKIGVVEKVTDVLDEAGIDYVIYDGVKPNPTI------TNVKDG 77 (377)
T ss_pred cCCCeEEECcCHHHHHHHHHHHhCCCeEEEECCchHhhcCcHHHHHHHHHHcCCeEEEeCCCCCCCCH------HHHHHH
Confidence 3456666665544444456677774 566665422111 23334444444332122 22111 12321 122334
Q ss_pred HhhhC-CCCCEEEEecCCchhH
Q 020805 169 WKGSG-GRIDALVSGIGTGGTI 189 (321)
Q Consensus 169 ~~ql~-~~~d~vv~p~G~Gg~~ 189 (321)
.++.. .++| +|+++|+|..+
T Consensus 78 ~~~~~~~~~D-~IIavGGGS~i 98 (377)
T cd08176 78 LAVFKKEGCD-FIISIGGGSPH 98 (377)
T ss_pred HHHHHhcCCC-EEEEeCCcHHH
Confidence 44332 3577 67788888764
No 354
>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1. Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=44.01 E-value=1.4e+02 Score=27.13 Aligned_cols=46 Identities=24% Similarity=0.283 Sum_probs=32.6
Q ss_pred CCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE
Q 020805 69 GESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAE 118 (321)
Q Consensus 69 g~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~ 118 (321)
|...+|...+|..|.+++..|+.+|++.+++... .+.+.++.+|.+
T Consensus 163 g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~----~~~~~~~~~g~~ 208 (350)
T cd08248 163 GKRVLILGGSGGVGTFAIQLLKAWGAHVTTTCST----DAIPLVKSLGAD 208 (350)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCc----chHHHHHHhCCc
Confidence 5565565557899999999999999986655432 356677777764
No 355
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=44.01 E-value=1.3e+02 Score=27.86 Aligned_cols=53 Identities=19% Similarity=0.124 Sum_probs=35.7
Q ss_pred eEEEeeCC--ChHHHHHHHHHHHcCCeEEEEecCCC--CHHHHH----HHHHcCCEEEEeC
Q 020805 71 SVLIEPTS--GNTGIGLAFMAAAKQYRLIITMPASM--SLERRI----ILRAFGAELVLTD 123 (321)
Q Consensus 71 ~~vv~~Ss--GN~g~AlA~aa~~~G~~~~ivvp~~~--~~~~~~----~~~~~Ga~v~~~~ 123 (321)
.+|+-... .|.+.|++.+++++|+.++++.|+.. +...+. ..+..|.++..+.
T Consensus 156 ~kia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 216 (332)
T PRK04284 156 IKFTYVGDGRNNVANALMQGAAIMGMDFHLVCPKELNPDDELLNKCKEIAAETGGKITITD 216 (332)
T ss_pred cEEEEecCCCcchHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEc
Confidence 34444444 48888999999999999999998853 223332 2345788887665
No 356
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=43.99 E-value=1.6e+02 Score=27.21 Aligned_cols=104 Identities=16% Similarity=0.166 Sum_probs=66.9
Q ss_pred eEEEeeCCChHHHHHHHHHH-HcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEcC
Q 020805 71 SVLIEPTSGNTGIGLAFMAA-AKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQ 149 (321)
Q Consensus 71 ~~vv~~SsGN~g~AlA~aa~-~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 149 (321)
++|..-.-|+-|+++|-.++ .+|++++.+-|.. +.. ....+|.+. ++ . .++.++. +...++
T Consensus 146 ktvGIiG~G~IG~~va~~l~~~fgm~V~~~~~~~-~~~---~~~~~~~~~--~~----l-------~ell~~s-Dvv~lh 207 (323)
T PRK15409 146 KTLGIVGMGRIGMALAQRAHFGFNMPILYNARRH-HKE---AEERFNARY--CD----L-------DTLLQES-DFVCII 207 (323)
T ss_pred CEEEEEcccHHHHHHHHHHHhcCCCEEEEECCCC-chh---hHHhcCcEe--cC----H-------HHHHHhC-CEEEEe
Confidence 56777788999999999987 7899877654432 221 123345432 11 2 2334443 555554
Q ss_pred CCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhH--HHHHHHHHh
Q 020805 150 QFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTI--TGAGKFLKE 198 (321)
Q Consensus 150 ~~~~~~~~~~g~~~~~~Ei~~ql~~~~d~vv~p~G~Gg~~--aGi~~~~k~ 198 (321)
---++. =..-+..|.++++ +++.+++-++-|+.+ ..+..+++.
T Consensus 208 ~plt~~----T~~li~~~~l~~m--k~ga~lIN~aRG~vVde~AL~~AL~~ 252 (323)
T PRK15409 208 LPLTDE----THHLFGAEQFAKM--KSSAIFINAGRGPVVDENALIAALQK 252 (323)
T ss_pred CCCChH----HhhccCHHHHhcC--CCCeEEEECCCccccCHHHHHHHHHc
Confidence 322332 2355677888888 579999999999997 667777764
No 357
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=43.97 E-value=2.4e+02 Score=25.24 Aligned_cols=28 Identities=18% Similarity=0.057 Sum_probs=11.1
Q ss_pred HHHHHcCCeEEEEecCCCCHHHHHHHHH
Q 020805 87 FMAAAKQYRLIITMPASMSLERRIILRA 114 (321)
Q Consensus 87 ~aa~~~G~~~~ivvp~~~~~~~~~~~~~ 114 (321)
-+|+..|++.+-+++.+++..+++.+..
T Consensus 134 ~~~~~~gl~~I~lv~p~t~~~Ri~~i~~ 161 (259)
T PF00290_consen 134 EAAKKHGLDLIPLVAPTTPEERIKKIAK 161 (259)
T ss_dssp HHHHHTT-EEEEEEETTS-HHHHHHHHH
T ss_pred HHHHHcCCeEEEEECCCCCHHHHHHHHH
Confidence 3344444444444444444444444333
No 358
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=43.96 E-value=2e+02 Score=24.70 Aligned_cols=67 Identities=16% Similarity=0.114 Sum_probs=40.1
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHH-HHcCCEEEEeCCCC-ChhHHHHHHHHHHH
Q 020805 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIIL-RAFGAELVLTDPAK-GMKGAVQKAEEILA 140 (321)
Q Consensus 71 ~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~-~~~Ga~v~~~~~~~-~~~~~~~~a~~~~~ 140 (321)
..+|+..+|..|.++|......|.+++++... ..+.+.+ ...+.++..+..+- +.++..+...+..+
T Consensus 2 ~vlItGasg~iG~~la~~l~~~G~~V~~~~r~---~~~~~~~~~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~ 70 (248)
T PRK10538 2 IVLVTGATAGFGECITRRFIQQGHKVIATGRR---QERLQELKDELGDNLYIAQLDVRNRAAIEEMLASLPA 70 (248)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEECC---HHHHHHHHHHhccceEEEEecCCCHHHHHHHHHHHHH
Confidence 45788889999999999998999987666432 2333332 33466665554332 22333344444433
No 359
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=43.93 E-value=2.4e+02 Score=25.25 Aligned_cols=52 Identities=25% Similarity=0.313 Sum_probs=33.4
Q ss_pred CCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHH-cCCE
Q 020805 64 GLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRA-FGAE 118 (321)
Q Consensus 64 g~~~~g~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~-~Ga~ 118 (321)
+.+.++...+|...+|-.|.+++..|+.+|.+.+++.+ ...+.+.++. +|++
T Consensus 141 ~~~~~~~~vlI~g~~g~ig~~~~~~a~~~G~~vi~~~~---~~~~~~~~~~~~g~~ 193 (329)
T cd05288 141 GKPKPGETVVVSAAAGAVGSVVGQIAKLLGARVVGIAG---SDEKCRWLVEELGFD 193 (329)
T ss_pred cCCCCCCEEEEecCcchHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHhhcCCc
Confidence 44556655555555688888888889988887555432 3345555555 7763
No 360
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=43.87 E-value=43 Score=34.14 Aligned_cols=51 Identities=22% Similarity=0.214 Sum_probs=38.6
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCC---------C---------HHHHHHHHHcCCEEEE
Q 020805 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM---------S---------LERRIILRAFGAELVL 121 (321)
Q Consensus 71 ~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~---------~---------~~~~~~~~~~Ga~v~~ 121 (321)
..|+.-.+|-.|++.|+..++.|++++||=.... + ...++.++.+|.+++.
T Consensus 328 ~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~ 396 (654)
T PRK12769 328 KRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFEL 396 (654)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEEC
Confidence 5688899999999999999999999888843321 1 1235567788887753
No 361
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=43.83 E-value=1.6e+02 Score=26.67 Aligned_cols=53 Identities=25% Similarity=0.231 Sum_probs=34.4
Q ss_pred cCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE
Q 020805 63 KGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAE 118 (321)
Q Consensus 63 ~g~~~~g~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~ 118 (321)
.+.+.+|...+|. .+|-.|.++...|+.+|...++.+ ..+..+.+.++.+|++
T Consensus 162 ~~~~~~~~~VlI~-g~g~vg~~~iqlak~~g~~~v~~~--~~~~~~~~~~~~~g~~ 214 (347)
T cd05278 162 LAGIKPGSTVAVI-GAGPVGLCAVAGARLLGAARIIAV--DSNPERLDLAKEAGAT 214 (347)
T ss_pred hcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEEE--eCCHHHHHHHHHhCCc
Confidence 3445666665664 457788888888999997444444 3345666777777753
No 362
>TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative. This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found.
Probab=43.83 E-value=2e+02 Score=24.43 Aligned_cols=53 Identities=19% Similarity=0.160 Sum_probs=36.5
Q ss_pred EEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC--HHHHHHHHHcCCEEEEeCCC
Q 020805 73 LIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS--LERRIILRAFGAELVLTDPA 125 (321)
Q Consensus 73 vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~--~~~~~~~~~~Ga~v~~~~~~ 125 (321)
+|+..+|.-|.++|......|.+++++.....+ ....+.++..+.++..+..+
T Consensus 2 lItGas~giG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D 56 (239)
T TIGR01831 2 LVTGASRGIGRAIANRLAADGFEICVHYHSGRSDAESVVSAIQAQGGNARLLQFD 56 (239)
T ss_pred EEeCCCchHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcCCeEEEEEcc
Confidence 677888889999999998999997666543322 22234556678777766543
No 363
>PRK09291 short chain dehydrogenase; Provisional
Probab=43.80 E-value=94 Score=26.82 Aligned_cols=53 Identities=19% Similarity=0.184 Sum_probs=35.8
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHH-HHHHHHcCCEEEEeC
Q 020805 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLER-RIILRAFGAELVLTD 123 (321)
Q Consensus 71 ~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~-~~~~~~~Ga~v~~~~ 123 (321)
..+|+..+|.-|.+++......|.+++++........+ .+.....|.++..+.
T Consensus 4 ~vlVtGasg~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 57 (257)
T PRK09291 4 TILITGAGSGFGREVALRLARKGHNVIAGVQIAPQVTALRAEAARRGLALRVEK 57 (257)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcceEEE
Confidence 56889999999999999999999998887654321111 223344565555444
No 364
>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.
Probab=43.72 E-value=1.9e+02 Score=26.09 Aligned_cols=48 Identities=23% Similarity=0.201 Sum_probs=30.5
Q ss_pred CCeEEEeeCCChHHHHHHHHHHHc-CCeEEEEecCCCCHHHHHHHHHcCCEE
Q 020805 69 GESVLIEPTSGNTGIGLAFMAAAK-QYRLIITMPASMSLERRIILRAFGAEL 119 (321)
Q Consensus 69 g~~~vv~~SsGN~g~AlA~aa~~~-G~~~~ivvp~~~~~~~~~~~~~~Ga~v 119 (321)
|...+|...+|..|.+++..|+.+ |++.+.+... ..+.+.++.+|++-
T Consensus 149 g~~vlV~ga~g~vg~~~~~~ak~~~G~~vi~~~~~---~~~~~~l~~~g~~~ 197 (336)
T TIGR02817 149 KRALLIIGGAGGVGSILIQLARQLTGLTVIATASR---PESQEWVLELGAHH 197 (336)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHhCCCEEEEEcCc---HHHHHHHHHcCCCE
Confidence 545555555678888888788876 8776555332 34556666677643
No 365
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=43.68 E-value=1.4e+02 Score=25.83 Aligned_cols=31 Identities=13% Similarity=0.127 Sum_probs=24.1
Q ss_pred eEEEeeCC--ChHHHHHHHHHHHcCCeEEEEec
Q 020805 71 SVLIEPTS--GNTGIGLAFMAAAKQYRLIITMP 101 (321)
Q Consensus 71 ~~vv~~Ss--GN~g~AlA~aa~~~G~~~~ivvp 101 (321)
..+|+..+ +.-|.++|....+.|.++++.-.
T Consensus 9 ~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r 41 (252)
T PRK06079 9 KIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQ 41 (252)
T ss_pred EEEEeCCCCCCchHHHHHHHHHHCCCEEEEecC
Confidence 56777766 57899999999899998776643
No 366
>cd08249 enoyl_reductase_like enoyl_reductase_like. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de
Probab=43.62 E-value=1.5e+02 Score=27.12 Aligned_cols=48 Identities=25% Similarity=0.342 Sum_probs=34.6
Q ss_pred CCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE
Q 020805 67 TPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAE 118 (321)
Q Consensus 67 ~~g~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~ 118 (321)
.++...+|...+|..|.+++..|+.+|++.+.+. . ..|.+.++.+|++
T Consensus 153 ~~~~~vlI~ga~g~vg~~~~~~a~~~G~~v~~~~-~---~~~~~~~~~~g~~ 200 (339)
T cd08249 153 SKGKPVLIWGGSSSVGTLAIQLAKLAGYKVITTA-S---PKNFDLVKSLGAD 200 (339)
T ss_pred CCCCEEEEEcChhHHHHHHHHHHHHcCCeEEEEE-C---cccHHHHHhcCCC
Confidence 4555656655668899999999999999766554 2 2566677778874
No 367
>PRK04148 hypothetical protein; Provisional
Probab=43.56 E-value=1.1e+02 Score=24.29 Aligned_cols=50 Identities=12% Similarity=0.139 Sum_probs=38.6
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCC
Q 020805 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 124 (321)
Q Consensus 71 ~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~ 124 (321)
..+++-..| +|.++|..-+..|.+++.+ +.++..++.++..+.+++..+-
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~G~~ViaI---Di~~~aV~~a~~~~~~~v~dDl 67 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKESGFDVIVI---DINEKAVEKAKKLGLNAFVDDL 67 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHCCCEEEEE---ECCHHHHHHHHHhCCeEEECcC
Confidence 457777778 8888888877899888877 5666678888888888876663
No 368
>CHL00194 ycf39 Ycf39; Provisional
Probab=43.53 E-value=99 Score=28.06 Aligned_cols=50 Identities=26% Similarity=0.373 Sum_probs=34.8
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeC
Q 020805 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTD 123 (321)
Q Consensus 71 ~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~ 123 (321)
+.+|+..+|.-|..++......|.+++++..... +...+...|.+++..+
T Consensus 2 kIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~---~~~~l~~~~v~~v~~D 51 (317)
T CHL00194 2 SLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLR---KASFLKEWGAELVYGD 51 (317)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChH---HhhhHhhcCCEEEECC
Confidence 4578889999999999998889999888876532 2222333455554443
No 369
>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=43.36 E-value=1.5e+02 Score=25.68 Aligned_cols=71 Identities=10% Similarity=0.046 Sum_probs=42.0
Q ss_pred eEEEeeCC--ChHHHHHHHHHHHcCCeEEEEec----CCC----CH----HHHHHHHHcCCEEEEeCCCC-ChhHHHHHH
Q 020805 71 SVLIEPTS--GNTGIGLAFMAAAKQYRLIITMP----ASM----SL----ERRIILRAFGAELVLTDPAK-GMKGAVQKA 135 (321)
Q Consensus 71 ~~vv~~Ss--GN~g~AlA~aa~~~G~~~~ivvp----~~~----~~----~~~~~~~~~Ga~v~~~~~~~-~~~~~~~~a 135 (321)
..+|+..+ +.-|.++|......|.++++... ... .. ...+.++..|.+++.+..+- +.++..+..
T Consensus 8 ~vlVtGas~~~giG~~~a~~l~~~G~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~i~~~~ 87 (256)
T PRK12859 8 VAVVTGVSRLDGIGAAICKELAEAGADIFFTYWTAYDKEMPWGVDQDEQIQLQEELLKNGVKVSSMELDLTQNDAPKELL 87 (256)
T ss_pred EEEEECCCCCCChHHHHHHHHHHCCCeEEEEecccccccccccccHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHH
Confidence 56777665 47889999998899998776521 110 11 22345677898887665432 233344444
Q ss_pred HHHHHh
Q 020805 136 EEILAK 141 (321)
Q Consensus 136 ~~~~~~ 141 (321)
.+..++
T Consensus 88 ~~~~~~ 93 (256)
T PRK12859 88 NKVTEQ 93 (256)
T ss_pred HHHHHH
Confidence 444443
No 370
>PRK07576 short chain dehydrogenase; Provisional
Probab=43.33 E-value=1.9e+02 Score=25.27 Aligned_cols=55 Identities=13% Similarity=0.094 Sum_probs=36.0
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeCC
Q 020805 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTDP 124 (321)
Q Consensus 70 ~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~-~~~~~~~~~~Ga~v~~~~~ 124 (321)
...+|+..+|.-|.++|......|..++++-..... ....+.+...+.+++.+..
T Consensus 10 k~ilItGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 65 (264)
T PRK07576 10 KNVVVVGGTSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAGPEGLGVSA 65 (264)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEEC
Confidence 367888888999999999888889987666543211 1122345556666655543
No 371
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=43.17 E-value=1.4e+02 Score=25.58 Aligned_cols=54 Identities=26% Similarity=0.262 Sum_probs=36.7
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC--HHHHHHHHHcCCEEEEeCC
Q 020805 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS--LERRIILRAFGAELVLTDP 124 (321)
Q Consensus 71 ~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~--~~~~~~~~~~Ga~v~~~~~ 124 (321)
..+|+..+|.-|.++|..-.+.|..+++....+.. ......++..+.++..+..
T Consensus 4 ~ilItGas~giG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 59 (248)
T PRK06947 4 VVLITGASRGIGRATAVLAAARGWSVGINYARDAAAAEETADAVRAAGGRACVVAG 59 (248)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEe
Confidence 56788888999999999988889887665433321 1223455667777776654
No 372
>PLN02928 oxidoreductase family protein
Probab=43.15 E-value=1.7e+02 Score=27.23 Aligned_cols=117 Identities=17% Similarity=0.081 Sum_probs=67.0
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE-eCCCCChhHHHHHHHHHHHhCCCeEEc
Q 020805 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL-TDPAKGMKGAVQKAEEILAKTPNAYML 148 (321)
Q Consensus 70 ~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~ 148 (321)
++++..-.-|+-|+.+|..++.+|++++++=|....... ..+...-..+.. +.....+. -..++.++. +...+
T Consensus 159 gktvGIiG~G~IG~~vA~~l~afG~~V~~~dr~~~~~~~-~~~~~~~~~~~~~~~~~~~~~----~L~ell~~a-DiVvl 232 (347)
T PLN02928 159 GKTVFILGYGAIGIELAKRLRPFGVKLLATRRSWTSEPE-DGLLIPNGDVDDLVDEKGGHE----DIYEFAGEA-DIVVL 232 (347)
T ss_pred CCEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCChhhh-hhhccccccccccccccCccc----CHHHHHhhC-CEEEE
Confidence 356777888999999999999999998887553211111 100000000000 00000011 123444444 55544
Q ss_pred CCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhH--HHHHHHHHh
Q 020805 149 QQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTI--TGAGKFLKE 198 (321)
Q Consensus 149 ~~~~~~~~~~~g~~~~~~Ei~~ql~~~~d~vv~p~G~Gg~~--aGi~~~~k~ 198 (321)
+--.++ .-..-+..|.++++ +++.+++-+|-|+.+ ..+..+++.
T Consensus 233 ~lPlt~----~T~~li~~~~l~~M--k~ga~lINvaRG~lVde~AL~~AL~~ 278 (347)
T PLN02928 233 CCTLTK----ETAGIVNDEFLSSM--KKGALLVNIARGGLLDYDAVLAALES 278 (347)
T ss_pred CCCCCh----HhhcccCHHHHhcC--CCCeEEEECCCccccCHHHHHHHHHc
Confidence 332222 22455667888888 578999999999988 666677764
No 373
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=43.04 E-value=1e+02 Score=30.06 Aligned_cols=51 Identities=22% Similarity=0.246 Sum_probs=38.5
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCC---------C---------HHHHHHHHHcCCEEEE
Q 020805 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM---------S---------LERRIILRAFGAELVL 121 (321)
Q Consensus 71 ~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~---------~---------~~~~~~~~~~Ga~v~~ 121 (321)
..|+.-.+|-.|.+.|..+++.|.+++++-.... + ....+.++.+|.+++.
T Consensus 142 ~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~ 210 (467)
T TIGR01318 142 KRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHL 210 (467)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEEC
Confidence 5688899999999999999999999888743321 1 1345677888888753
No 374
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=42.83 E-value=1.4e+02 Score=25.93 Aligned_cols=31 Identities=26% Similarity=0.336 Sum_probs=25.6
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEec
Q 020805 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMP 101 (321)
Q Consensus 71 ~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp 101 (321)
+.+|+.++|.-|.++|......|.++++.-.
T Consensus 2 ~vlItGas~gIG~aia~~l~~~G~~V~~~~r 32 (259)
T PRK08340 2 NVLVTASSRGIGFNVARELLKKGARVVISSR 32 (259)
T ss_pred eEEEEcCCcHHHHHHHHHHHHcCCEEEEEeC
Confidence 4588889999999999999899998666543
No 375
>PRK05650 short chain dehydrogenase; Provisional
Probab=42.70 E-value=1.9e+02 Score=25.26 Aligned_cols=55 Identities=20% Similarity=0.210 Sum_probs=37.6
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeCCC
Q 020805 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTDPA 125 (321)
Q Consensus 71 ~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~-~~~~~~~~~~Ga~v~~~~~~ 125 (321)
..+|+..+|.-|.++|......|.+++++...... +.....++..|.++..+..+
T Consensus 2 ~vlVtGasggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D 57 (270)
T PRK05650 2 RVMITGAASGLGRAIALRWAREGWRLALADVNEEGGEETLKLLREAGGDGFYQRCD 57 (270)
T ss_pred EEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcc
Confidence 35788888999999999988889987776544322 22233456667777666543
No 376
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=42.65 E-value=1.4e+02 Score=28.14 Aligned_cols=90 Identities=21% Similarity=0.265 Sum_probs=41.3
Q ss_pred CeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChh--HHHHHHHHHHHhCCCeE-EcCCC-CCCcchhhhhhchHHHHH
Q 020805 94 YRLIITMPASMSLERRIILRAFGAELVLTDPAKGMK--GAVQKAEEILAKTPNAY-MLQQF-ENPANPKIHYETTGPELW 169 (321)
Q Consensus 94 ~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~--~~~~~a~~~~~~~~~~~-~~~~~-~~~~~~~~g~~~~~~Ei~ 169 (321)
.|..|+.-.+.-..--+.++.+|.++.++.+...+. ...+...+..++.+-.+ ..... .||.. ....-+.+.+
T Consensus 6 ~p~~i~~G~g~~~~l~~~~~~~~~r~livt~~~~~~~~~~~~~v~~~L~~~g~~~~~~~~v~~~p~~---~~v~~~~~~~ 82 (382)
T cd08187 6 NPTKIIFGKGTESELGKELKKYGKKVLLVYGGGSIKKNGLYDRVIASLKEAGIEVVELGGVEPNPRL---ETVREGIELC 82 (382)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCEEEEEeCCcHHHhcCcHHHHHHHHHHcCCeEEEECCccCCCCH---HHHHHHHHHH
Confidence 455555555554444456677777887665432222 12233333334331112 12111 12221 1112223334
Q ss_pred hhhCCCCCEEEEecCCchhH
Q 020805 170 KGSGGRIDALVSGIGTGGTI 189 (321)
Q Consensus 170 ~ql~~~~d~vv~p~G~Gg~~ 189 (321)
++ .++| +|+++|+|+.+
T Consensus 83 ~~--~~~D-~IIaiGGGS~i 99 (382)
T cd08187 83 KE--EKVD-FILAVGGGSVI 99 (382)
T ss_pred HH--cCCC-EEEEeCChHHH
Confidence 44 3578 57788887765
No 377
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=42.53 E-value=84 Score=29.50 Aligned_cols=49 Identities=20% Similarity=0.181 Sum_probs=29.1
Q ss_pred CCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEE
Q 020805 68 PGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAEL 119 (321)
Q Consensus 68 ~g~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v 119 (321)
+|.. |+...+|.-|.+++..|+.+|.+.+++.+. +..+.+.++.+|++.
T Consensus 178 ~g~~-VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~--~~~~~~~a~~lGa~~ 226 (375)
T PLN02178 178 SGKR-LGVNGLGGLGHIAVKIGKAFGLRVTVISRS--SEKEREAIDRLGADS 226 (375)
T ss_pred CCCE-EEEEcccHHHHHHHHHHHHcCCeEEEEeCC--hHHhHHHHHhCCCcE
Confidence 4434 444456778888777888888764444222 233355666777754
No 378
>PRK10537 voltage-gated potassium channel; Provisional
Probab=42.48 E-value=3.1e+02 Score=26.14 Aligned_cols=95 Identities=13% Similarity=0.060 Sum_probs=56.8
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEcCC
Q 020805 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQ 150 (321)
Q Consensus 71 ~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 150 (321)
.+++.+..|+.|..++-.-+..|.+++++.++. .+.....|.+++.-
T Consensus 241 ~HvII~G~g~lg~~v~~~L~~~g~~vvVId~d~-----~~~~~~~g~~vI~G---------------------------- 287 (393)
T PRK10537 241 DHFIICGHSPLAINTYLGLRQRGQAVTVIVPLG-----LEHRLPDDADLIPG---------------------------- 287 (393)
T ss_pred CeEEEECCChHHHHHHHHHHHCCCCEEEEECch-----hhhhccCCCcEEEe----------------------------
Confidence 568888889999998887777888888887541 11111122222111
Q ss_pred CCCCcchhhhhhchHHHHHhhhC-CCCCEEEEecCCchhHHHHHHHHHhcCCCcEEEEEe
Q 020805 151 FENPANPKIHYETTGPELWKGSG-GRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIE 209 (321)
Q Consensus 151 ~~~~~~~~~g~~~~~~Ei~~ql~-~~~d~vv~p~G~Gg~~aGi~~~~k~~~~~~~vigv~ 209 (321)
|+.. .|.+++.+ .+.+.+++....-..-.-+....|+.+|+.++++..
T Consensus 288 --D~td---------~e~L~~AgI~~A~aVI~~t~dD~~Nl~ivL~ar~l~p~~kIIa~v 336 (393)
T PRK10537 288 --DSSD---------SAVLKKAGAARARAILALRDNDADNAFVVLAAKEMSSDVKTVAAV 336 (393)
T ss_pred --CCCC---------HHHHHhcCcccCCEEEEcCCChHHHHHHHHHHHHhCCCCcEEEEE
Confidence 2211 23344432 245677776666544445666778888888887755
No 379
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=42.45 E-value=2.1e+02 Score=24.22 Aligned_cols=115 Identities=17% Similarity=0.093 Sum_probs=64.2
Q ss_pred HhhhCCCCCEEEEecCCchhHHHHHHHHHhcCCCcEEEEEecCCCCcc--C-----CCCCCCcccccccCCCCccc--cc
Q 020805 169 WKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVL--S-----GGKPGPHKIQGIGAGFVPGV--LE 239 (321)
Q Consensus 169 ~~ql~~~~d~vv~p~G~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~--~-----~g~~~~~~~~gl~~~~~~~~--~~ 239 (321)
+..|...++-++.=+|.|+-.-++-.+ ..+|..||++++-.....- . -+.++-..++|-++...+.. .+
T Consensus 27 ls~L~~~~g~~l~DIGaGtGsi~iE~a--~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~d 104 (187)
T COG2242 27 LSKLRPRPGDRLWDIGAGTGSITIEWA--LAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLPSPD 104 (187)
T ss_pred HHhhCCCCCCEEEEeCCCccHHHHHHH--HhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCCC
Confidence 445666677677666666555555554 5689999999996554211 0 01222233444433322211 11
Q ss_pred ccccCEEEEeCHHHHHHHHHHHHHhcCCeEec-chHHHHHHHHHHHhcC
Q 020805 240 VNIIDEVVQVSSDEAIETAKLLALKEGLFVGI-SSGGAAAAAIEIAKRP 287 (321)
Q Consensus 240 ~~~~d~~~~V~d~e~~~a~~~l~~~~Gi~~~p-ss~~a~aa~~~~~~~~ 287 (321)
.-.+... .+.+++++++.+..+.-|.++-- .+=-.++.+++..++.
T Consensus 105 aiFIGGg--~~i~~ile~~~~~l~~ggrlV~naitlE~~~~a~~~~~~~ 151 (187)
T COG2242 105 AIFIGGG--GNIEEILEAAWERLKPGGRLVANAITLETLAKALEALEQL 151 (187)
T ss_pred EEEECCC--CCHHHHHHHHHHHcCcCCeEEEEeecHHHHHHHHHHHHHc
Confidence 1122233 78889999999888876654433 4555555565655543
No 380
>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR). Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts
Probab=42.41 E-value=2.4e+02 Score=24.81 Aligned_cols=52 Identities=29% Similarity=0.337 Sum_probs=33.8
Q ss_pred CCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE
Q 020805 64 GLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAE 118 (321)
Q Consensus 64 g~~~~g~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~ 118 (321)
+.+.+|...+|...+|..|.+++..++..|.+.++..+. ..+.+.++.+|++
T Consensus 140 ~~~~~g~~vlI~g~~~~~g~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~ 191 (325)
T cd08253 140 AGAKAGETVLVHGGSGAVGHAAVQLARWAGARVIATASS---AEGAELVRQAGAD 191 (325)
T ss_pred hCCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeCC---HHHHHHHHHcCCC
Confidence 445566566666667888888888888888875555332 3445555556653
No 381
>PRK06101 short chain dehydrogenase; Provisional
Probab=42.23 E-value=2.1e+02 Score=24.45 Aligned_cols=49 Identities=20% Similarity=0.153 Sum_probs=33.5
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEe
Q 020805 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLT 122 (321)
Q Consensus 71 ~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~ 122 (321)
..+|+..+|.-|.++|..-...|.+++++... ..+.+.+...+.++..+
T Consensus 3 ~vlItGas~giG~~la~~L~~~G~~V~~~~r~---~~~~~~~~~~~~~~~~~ 51 (240)
T PRK06101 3 AVLITGATSGIGKQLALDYAKQGWQVIACGRN---QSVLDELHTQSANIFTL 51 (240)
T ss_pred EEEEEcCCcHHHHHHHHHHHhCCCEEEEEECC---HHHHHHHHHhcCCCeEE
Confidence 46888888999999998888889997776442 34455554444444433
No 382
>cd06268 PBP1_ABC_transporter_LIVBP_like Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC
Probab=42.15 E-value=2.3e+02 Score=24.45 Aligned_cols=149 Identities=17% Similarity=0.145 Sum_probs=76.7
Q ss_pred HHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCC---------------C-----HHHHHHHH
Q 020805 54 YSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM---------------S-----LERRIILR 113 (321)
Q Consensus 54 ~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~---------------~-----~~~~~~~~ 113 (321)
...+..+.+++. ..++...+.....+++-.+...|+|.+.+..... + ..-.+.+.
T Consensus 56 ~~~~~~l~~~~v-----~~iig~~~~~~~~~~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (298)
T cd06268 56 AAAARELVDDGV-----DAVIGPLSSGVALAAAPVAEEAGVPLISPGATSPALTGKGNPYVFRTAPSDAQQAAALADYLA 130 (298)
T ss_pred HHHHHHHHhCCc-----eEEEcCCcchhHHhhHHHHHhCCCcEEccCCCCcccccCCCceEEEcccCcHHHHHHHHHHHH
Confidence 344555555555 5566555445556777788899999876532210 0 11133455
Q ss_pred HcC--CEEEEeCCCCChh-HHHHHHHHHHHhCCCeEEcCCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhHH
Q 020805 114 AFG--AELVLTDPAKGMK-GAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTIT 190 (321)
Q Consensus 114 ~~G--a~v~~~~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~Ei~~ql~~~~d~vv~p~G~Gg~~a 190 (321)
..| .+|..+..+..+. +..+..++..++.+.........+.. ..-......+|.+ .++|.|++. +.+....
T Consensus 131 ~~~~~~~i~~v~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~--~~~~~~~~~~l~~---~~~~~vi~~-~~~~~~~ 204 (298)
T cd06268 131 EKGKVKKVAIIYDDYAYGRGLAAAFREALKKLGGEVVAEETYPPG--ATDFSPLIAKLKA---AGPDAVFLA-GYGGDAA 204 (298)
T ss_pred HhcCCCEEEEEEcCCchhHHHHHHHHHHHHHcCCEEEEEeccCCC--CccHHHHHHHHHh---cCCCEEEEc-cccchHH
Confidence 554 5776665433222 23333344444442121111111111 0112222223322 357877665 4557778
Q ss_pred HHHHHHHhcCCCcEEEEEecCCC
Q 020805 191 GAGKFLKEKNPNIKLYGIEPTES 213 (321)
Q Consensus 191 Gi~~~~k~~~~~~~vigv~~~~~ 213 (321)
++.+.+++.+.++++++......
T Consensus 205 ~~~~~~~~~g~~~~~~~~~~~~~ 227 (298)
T cd06268 205 LFLKQAREAGLKVPIVGGDGAAA 227 (298)
T ss_pred HHHHHHHHcCCCCcEEecCccCC
Confidence 88899988877788887765443
No 383
>cd08251 polyketide_synthase polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde a
Probab=42.06 E-value=2.4e+02 Score=24.64 Aligned_cols=54 Identities=24% Similarity=0.369 Sum_probs=37.0
Q ss_pred HcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE
Q 020805 62 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAE 118 (321)
Q Consensus 62 ~~g~~~~g~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~ 118 (321)
+.+.+.+|...++...+|..|.+++..++.+|++.+++.+. ..+.+.++.+|++
T Consensus 114 ~~~~~~~g~~vli~~~~~~~g~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~ 167 (303)
T cd08251 114 ARAGLAKGEHILIQTATGGTGLMAVQLARLKGAEIYATASS---DDKLEYLKQLGVP 167 (303)
T ss_pred HhcCCCCCCEEEEecCCcHHHHHHHHHHHHcCCEEEEEcCC---HHHHHHHHHcCCC
Confidence 35566777565665667888889888999999885555333 3456666777764
No 384
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=42.06 E-value=1.8e+02 Score=26.69 Aligned_cols=45 Identities=16% Similarity=0.187 Sum_probs=32.5
Q ss_pred ChHHHHHHHHHHHcCCeEEEEecCCC--CHHHHHH----HHHcCCEEEEeC
Q 020805 79 GNTGIGLAFMAAAKQYRLIITMPASM--SLERRII----LRAFGAELVLTD 123 (321)
Q Consensus 79 GN~g~AlA~aa~~~G~~~~ivvp~~~--~~~~~~~----~~~~Ga~v~~~~ 123 (321)
+|...+++.+++++|+.++++.|+.. +....+. .+..|+++....
T Consensus 158 ~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 208 (304)
T TIGR00658 158 NNVCNSLMLAGAKLGMDVVVATPEGYEPDADIVKKAQEIAKENGGSVELTH 208 (304)
T ss_pred CchHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEc
Confidence 68889999999999999999988853 2333333 345788877665
No 385
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=41.95 E-value=99 Score=23.71 Aligned_cols=50 Identities=16% Similarity=0.055 Sum_probs=29.7
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 020805 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 120 (321)
Q Consensus 71 ~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~ 120 (321)
+.++.+..-.+...+--.|..+|++.+++.|....+.-++.++..|.+++
T Consensus 57 Dlavv~~~~~~~~~~v~~~~~~g~~~v~~~~g~~~~~~~~~a~~~gi~vi 106 (116)
T PF13380_consen 57 DLAVVCVPPDKVPEIVDEAAALGVKAVWLQPGAESEELIEAAREAGIRVI 106 (116)
T ss_dssp SEEEE-S-HHHHHHHHHHHHHHT-SEEEE-TTS--HHHHHHHHHTT-EEE
T ss_pred CEEEEEcCHHHHHHHHHHHHHcCCCEEEEEcchHHHHHHHHHHHcCCEEE
Confidence 44555555556666666677778888888888767777777777777654
No 386
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=41.78 E-value=2.4e+02 Score=27.48 Aligned_cols=29 Identities=10% Similarity=0.029 Sum_probs=26.9
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEE
Q 020805 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIIT 99 (321)
Q Consensus 71 ~~vv~~SsGN~g~AlA~aa~~~G~~~~iv 99 (321)
..|....+|..|.+.|+--++.|..++||
T Consensus 124 ~~VaviGaGPAGl~~a~~L~~~G~~Vtv~ 152 (457)
T COG0493 124 KKVAVIGAGPAGLAAADDLSRAGHDVTVF 152 (457)
T ss_pred CEEEEECCCchHhhhHHHHHhCCCeEEEe
Confidence 56888899999999999999999999997
No 387
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=41.70 E-value=1.9e+02 Score=28.65 Aligned_cols=105 Identities=24% Similarity=0.260 Sum_probs=67.9
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEcCC
Q 020805 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQ 150 (321)
Q Consensus 71 ~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 150 (321)
++|..-.-|+-|.++|..++.+|++++.+=|.. +..+ ...+|.+. ++ +. .++.++. +...++-
T Consensus 139 ktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~-~~~~---~~~~g~~~--~~---~l-------~ell~~a-DvV~l~l 201 (525)
T TIGR01327 139 KTLGVIGLGRIGSIVAKRAKAFGMKVLAYDPYI-SPER---AEQLGVEL--VD---DL-------DELLARA-DFITVHT 201 (525)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCC-ChhH---HHhcCCEE--cC---CH-------HHHHhhC-CEEEEcc
Confidence 567777889999999999999999988886542 2222 23455432 22 11 2344443 5555444
Q ss_pred CCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhH--HHHHHHHHh
Q 020805 151 FENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTI--TGAGKFLKE 198 (321)
Q Consensus 151 ~~~~~~~~~g~~~~~~Ei~~ql~~~~d~vv~p~G~Gg~~--aGi~~~~k~ 198 (321)
..++.. ...+..+.++++ +++.+++-++.|+.+ ..+..+++.
T Consensus 202 Plt~~T----~~li~~~~l~~m--k~ga~lIN~aRG~~vde~aL~~aL~~ 245 (525)
T TIGR01327 202 PLTPET----RGLIGAEELAKM--KKGVIIVNCARGGIIDEAALYEALEE 245 (525)
T ss_pred CCChhh----ccCcCHHHHhcC--CCCeEEEEcCCCceeCHHHHHHHHHc
Confidence 333322 234456778887 578999999999987 566667764
No 388
>PRK05957 aspartate aminotransferase; Provisional
Probab=41.68 E-value=1.7e+02 Score=27.38 Aligned_cols=54 Identities=11% Similarity=0.151 Sum_probs=30.1
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCC
Q 020805 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPA 125 (321)
Q Consensus 71 ~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~ 125 (321)
..++..++++.+..++..+- +.=.-.|+++.-.-......++..|.+++.++.+
T Consensus 90 ~~i~~t~G~~~~l~~~~~~~-~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~ 143 (389)
T PRK05957 90 QAIVVTAGSNMAFMNAILAI-TDPGDEIILNTPYYFNHEMAITMAGCQPILVPTD 143 (389)
T ss_pred CeEEEeCChHHHHHHHHHHh-cCCCCEEEEeCCCCcCHHHHHHhcCCEEEEeecC
Confidence 34776777777765554432 2222234444322122234567899999988754
No 389
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=41.62 E-value=1.5e+02 Score=27.50 Aligned_cols=53 Identities=19% Similarity=0.221 Sum_probs=35.9
Q ss_pred eEEEeeCC--ChHHHHHHHHHHHcCCeEEEEecCCCC--HHHHH----HHHHcCCEEEEeC
Q 020805 71 SVLIEPTS--GNTGIGLAFMAAAKQYRLIITMPASMS--LERRI----ILRAFGAELVLTD 123 (321)
Q Consensus 71 ~~vv~~Ss--GN~g~AlA~aa~~~G~~~~ivvp~~~~--~~~~~----~~~~~Ga~v~~~~ 123 (321)
.+|.-... -|.+.++..+++++|++++++.|+... ...++ ..+..|+++....
T Consensus 157 l~va~vGD~~~~v~~S~~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 217 (334)
T PRK12562 157 MTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEASLVAECSALAQKHGGKITLTE 217 (334)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCEEEEECCcccCCcHHHHHHHHHHHHHcCCeEEEEc
Confidence 34444444 378899999999999999999998632 22232 2355688877665
No 390
>TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit. This model represents the alpha subunit, or the N-terminal region, of sulfopyruvate decarboxylase, an enzyme of coenzyme M biosynthesis. Coenzyme M is found almost exclusively in the methanogenic archaea. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=41.56 E-value=1.9e+02 Score=23.50 Aligned_cols=29 Identities=24% Similarity=0.201 Sum_probs=19.9
Q ss_pred EEEeeCC--ChHHHHHHHHHHHcCCeEEEEe
Q 020805 72 VLIEPTS--GNTGIGLAFMAAAKQYRLIITM 100 (321)
Q Consensus 72 ~vv~~Ss--GN~g~AlA~aa~~~G~~~~ivv 100 (321)
.++..++ ||...+++-+....++|+++++
T Consensus 61 ~v~~~~sG~gn~~~~l~~a~~~~~~Pvl~i~ 91 (157)
T TIGR03845 61 AILMQSSGLGNSINALASLNKTYGIPLPILA 91 (157)
T ss_pred EEEEeCCcHHHHHHHHHHHHHcCCCCEEEEE
Confidence 3454555 5666666555558899999999
No 391
>PRK07062 short chain dehydrogenase; Provisional
Probab=41.52 E-value=2.3e+02 Score=24.60 Aligned_cols=33 Identities=9% Similarity=0.055 Sum_probs=27.1
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecC
Q 020805 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPA 102 (321)
Q Consensus 70 ~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~ 102 (321)
...+|+..+|.-|.++|......|.+++++...
T Consensus 9 k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~ 41 (265)
T PRK07062 9 RVAVVTGGSSGIGLATVELLLEAGASVAICGRD 41 (265)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCC
Confidence 367888888999999999998999987766554
No 392
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=41.50 E-value=57 Score=26.61 Aligned_cols=47 Identities=19% Similarity=0.188 Sum_probs=36.3
Q ss_pred EEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCC
Q 020805 73 LIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 124 (321)
Q Consensus 73 vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~ 124 (321)
+|+..+|+.|..++-.....|.+++++++...+... ..+.+++..+-
T Consensus 2 ~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~-----~~~~~~~~~d~ 48 (183)
T PF13460_consen 2 LVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED-----SPGVEIIQGDL 48 (183)
T ss_dssp EEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH-----CTTEEEEESCT
T ss_pred EEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc-----ccccccceeee
Confidence 567788999999999999999999999988654333 45666655553
No 393
>TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase. This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis.
Probab=41.48 E-value=1.9e+02 Score=24.35 Aligned_cols=53 Identities=25% Similarity=0.223 Sum_probs=36.0
Q ss_pred EEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC--HHHHHHHHHcCCEEEEeCCC
Q 020805 73 LIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS--LERRIILRAFGAELVLTDPA 125 (321)
Q Consensus 73 vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~--~~~~~~~~~~Ga~v~~~~~~ 125 (321)
+|+.++|-.|..+|......|.+++++.....+ ......++..|+++..+..+
T Consensus 2 lItG~~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D 56 (239)
T TIGR01830 2 LVTGASRGIGRAIALKLAKEGAKVIITYRSSEEGAEEVVEELKAYGVKALGVVCD 56 (239)
T ss_pred EEECCCcHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHhcCCceEEEEec
Confidence 677888889999998888889987666544311 12334566778777665543
No 394
>cd08272 MDR6 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=41.45 E-value=2.2e+02 Score=25.19 Aligned_cols=54 Identities=28% Similarity=0.399 Sum_probs=36.6
Q ss_pred HcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEE
Q 020805 62 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAEL 119 (321)
Q Consensus 62 ~~g~~~~g~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v 119 (321)
+.+.+.+|...+|...+|..|.+++..++..|++++++.+ + .+.+.++.+|++-
T Consensus 138 ~~~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~---~-~~~~~~~~~g~~~ 191 (326)
T cd08272 138 DRAAVQAGQTVLIHGGAGGVGHVAVQLAKAAGARVYATAS---S-EKAAFARSLGADP 191 (326)
T ss_pred HhcCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEec---h-HHHHHHHHcCCCE
Confidence 4455666656566555788999999999999988665543 2 4555556677643
No 395
>PRK06841 short chain dehydrogenase; Provisional
Probab=41.37 E-value=2.2e+02 Score=24.45 Aligned_cols=33 Identities=18% Similarity=0.200 Sum_probs=26.3
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecC
Q 020805 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPA 102 (321)
Q Consensus 70 ~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~ 102 (321)
...+|+..+|--|.++|......|.+++++...
T Consensus 16 k~vlItGas~~IG~~la~~l~~~G~~Vi~~~r~ 48 (255)
T PRK06841 16 KVAVVTGGASGIGHAIAELFAAKGARVALLDRS 48 (255)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 367888888999999999988899987666543
No 396
>PRK08251 short chain dehydrogenase; Provisional
Probab=41.09 E-value=2.2e+02 Score=24.35 Aligned_cols=70 Identities=23% Similarity=0.201 Sum_probs=39.7
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHH-HHHHHHc--CCEEEEeCCCCC-hhHHHHHHHHHHH
Q 020805 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLER-RIILRAF--GAELVLTDPAKG-MKGAVQKAEEILA 140 (321)
Q Consensus 71 ~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~-~~~~~~~--Ga~v~~~~~~~~-~~~~~~~a~~~~~ 140 (321)
..+|+..+|.-|.++|..-...|.++++.......... ...+... +.++..+..+.. .++..+...+..+
T Consensus 4 ~vlItGas~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 77 (248)
T PRK08251 4 KILITGASSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFRD 77 (248)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHHH
Confidence 56888888999999999888889876666443211111 1222222 667766654332 2333343444433
No 397
>PRK02255 putrescine carbamoyltransferase; Provisional
Probab=41.07 E-value=1.7e+02 Score=27.28 Aligned_cols=45 Identities=20% Similarity=0.279 Sum_probs=31.7
Q ss_pred ChHHHHHHHHHHHcCCeEEEEecCCC--CHHHHHHHH----HcCCEEEEeC
Q 020805 79 GNTGIGLAFMAAAKQYRLIITMPASM--SLERRIILR----AFGAELVLTD 123 (321)
Q Consensus 79 GN~g~AlA~aa~~~G~~~~ivvp~~~--~~~~~~~~~----~~Ga~v~~~~ 123 (321)
.|.+.+++.+++++|+.++++.|+.. +...++.++ ..|.++..+.
T Consensus 164 ~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 214 (338)
T PRK02255 164 TQVCVSLMFIATKMGMDFVHFGPKGYQLPEEHLAIAEENCEVSGGSVLVTD 214 (338)
T ss_pred chHHHHHHHHHHhCCCEEEEECCCccccCHHHHHHHHHHHHhcCCeEEEEc
Confidence 57888888888888988888888853 333343333 4677777665
No 398
>PRK07324 transaminase; Validated
Probab=41.02 E-value=1.9e+02 Score=26.93 Aligned_cols=52 Identities=12% Similarity=-0.033 Sum_probs=31.4
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCC
Q 020805 72 VLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 124 (321)
Q Consensus 72 ~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~ 124 (321)
.|+..+++..+..++..+- ++-.-.|+++.-.-..-...++.+|++++.++-
T Consensus 82 ~vi~t~G~~~al~~~~~~l-~~~gd~Vl~~~P~y~~~~~~~~~~g~~v~~v~~ 133 (373)
T PRK07324 82 NILQTNGATGANFLVLYAL-VEPGDHVISVYPTYQQLYDIPESLGAEVDYWQL 133 (373)
T ss_pred hEEEcCChHHHHHHHHHHh-CCCCCEEEEcCCCchhHHHHHHHcCCEEEEEec
Confidence 3666666667666665543 333234555543333445677889999998874
No 399
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=40.75 E-value=2.7e+02 Score=27.07 Aligned_cols=51 Identities=10% Similarity=0.047 Sum_probs=33.8
Q ss_pred EEeeCCChHHHHHHHHHHHcCCe-EEEEecCCCCHHHHHHHHHcCCEEEEeCCC
Q 020805 73 LIEPTSGNTGIGLAFMAAAKQYR-LIITMPASMSLERRIILRAFGAELVLTDPA 125 (321)
Q Consensus 73 vv~~SsGN~g~AlA~aa~~~G~~-~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~ 125 (321)
|+..++ ++ .|+-..++.+-=+ -+|++..-+-..-+..++.+|++++.++.+
T Consensus 158 IiiT~G-~q-~al~l~~~~l~~pGd~v~vE~PtY~~~~~~~~~~g~~~~~vp~d 209 (459)
T COG1167 158 IVITSG-AQ-QALDLLLRLLLDPGDTVLVEDPTYPGALQALEALGARVIPVPVD 209 (459)
T ss_pred EEEeCC-HH-HHHHHHHHHhCCCCCEEEEcCCCcHHHHHHHHHcCCcEEecCCC
Confidence 454443 44 3555566555434 566666656667788999999999998864
No 400
>PRK14807 histidinol-phosphate aminotransferase; Provisional
Probab=40.69 E-value=1.9e+02 Score=26.55 Aligned_cols=53 Identities=11% Similarity=0.033 Sum_probs=31.4
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCC
Q 020805 72 VLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPA 125 (321)
Q Consensus 72 ~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~ 125 (321)
.|+..+++..+..++..+- .+-.-.|+++.-.-..-....+..|++++.++.+
T Consensus 78 ~i~it~G~~~~l~~~~~~l-~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~ 130 (351)
T PRK14807 78 NIFVGNGSDEIIHLIMLAF-INKGDVVIYPHPSFAMYSVYSKIAGAVEIPVKLK 130 (351)
T ss_pred cEEEecCHHHHHHHHHHHh-cCCCCEEEEeCCChHHHHHHHHHcCCeEEEeecC
Confidence 4665665566655554432 2323445555544344555678899999988753
No 401
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=40.50 E-value=1.4e+02 Score=28.10 Aligned_cols=32 Identities=6% Similarity=-0.117 Sum_probs=17.9
Q ss_pred CCeEEEEecCCCCHHHHHHHHHcCC-EEEEeCC
Q 020805 93 QYRLIITMPASMSLERRIILRAFGA-ELVLTDP 124 (321)
Q Consensus 93 G~~~~ivvp~~~~~~~~~~~~~~Ga-~v~~~~~ 124 (321)
-+|..|+.-.+.-..--+.++.+|. ++.++.+
T Consensus 5 ~~p~~i~fG~g~l~~l~~~l~~~g~~r~lvvt~ 37 (379)
T TIGR02638 5 ILNETSYFGAGAIEDIVDEVKRRGFKKALVVTD 37 (379)
T ss_pred cCCCeEEECcCHHHHHHHHHHhcCCCEEEEEcC
Confidence 3455666655554444456677774 5555543
No 402
>PLN02477 glutamate dehydrogenase
Probab=40.50 E-value=1.3e+02 Score=28.89 Aligned_cols=52 Identities=15% Similarity=0.047 Sum_probs=38.4
Q ss_pred hHHHHHHHHHHHHc-CCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecC
Q 020805 50 DRIGYSMISDAEAK-GLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPA 102 (321)
Q Consensus 50 ~R~a~~~l~~a~~~-g~~~~g~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~ 102 (321)
-||..+.+..+.+. |. ...+.+|+.-..||-|..+|......|.+++.+...
T Consensus 186 g~Gv~~~~~~~~~~~g~-~l~g~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD~ 238 (410)
T PLN02477 186 GRGVVFATEALLAEHGK-SIAGQTFVIQGFGNVGSWAAQLIHEKGGKIVAVSDI 238 (410)
T ss_pred hHHHHHHHHHHHHHcCC-CccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECC
Confidence 46777877777653 43 334467888889999999999998888877766543
No 403
>PRK04870 histidinol-phosphate aminotransferase; Provisional
Probab=40.45 E-value=2e+02 Score=26.38 Aligned_cols=53 Identities=15% Similarity=0.081 Sum_probs=33.1
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCC
Q 020805 72 VLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPA 125 (321)
Q Consensus 72 ~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~ 125 (321)
.|+..+++..+..++..+- .+-.-.|++|.-.-..-....+.+|++++.++-+
T Consensus 83 ~I~~t~G~~~~i~~~~~~~-~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~i~~~ 135 (356)
T PRK04870 83 DVLLGNGSDELIQLLALAC-AKPGATVLAPEPGFVMYRMSAKLAGLEFVGVPLT 135 (356)
T ss_pred cEEEcCCHHHHHHHHHHHh-cCCCCEEEECCCCHHHHHHHHHHcCCEEEEecCC
Confidence 3665666666665554432 2323456666655555566788999999998753
No 404
>PRK07775 short chain dehydrogenase; Provisional
Probab=40.43 E-value=2.4e+02 Score=24.74 Aligned_cols=55 Identities=22% Similarity=0.142 Sum_probs=36.6
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCH-HHHHHHHHcCCEEEEeCCC
Q 020805 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSL-ERRIILRAFGAELVLTDPA 125 (321)
Q Consensus 71 ~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~-~~~~~~~~~Ga~v~~~~~~ 125 (321)
..+|+..+|.-|.++|......|.+++++....... .-...++..|.++..+..+
T Consensus 12 ~vlVtGa~g~iG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D 67 (274)
T PRK07775 12 PALVAGASSGIGAATAIELAAAGFPVALGARRVEKCEELVDKIRADGGEAVAFPLD 67 (274)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECC
Confidence 567888889999999998888899876665432111 1123455668887765543
No 405
>PF09837 DUF2064: Uncharacterized protein conserved in bacteria (DUF2064); InterPro: IPR018641 This entry contains proteins that have no known function. ; PDB: 3CGX_A.
Probab=40.41 E-value=1.7e+02 Score=22.66 Aligned_cols=98 Identities=13% Similarity=0.071 Sum_probs=49.2
Q ss_pred HHHHHHHcCCeEEEEecCCCCHHHHHH-HHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEcCCCCCCcchhhhhhc
Q 020805 85 LAFMAAAKQYRLIITMPASMSLERRII-LRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYET 163 (321)
Q Consensus 85 lA~aa~~~G~~~~ivvp~~~~~~~~~~-~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 163 (321)
|+...+..+.+..|+............ ....+.+++.=.+ .++.+++..+.+.+.+.-....+-..|-|.....
T Consensus 2 l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~Q~g-~dLG~Rm~~a~~~~~~g~~~vvliGsD~P~l~~~---- 76 (122)
T PF09837_consen 2 LAALAQADGADVVLAYTPDGDHAAFRQLWLPSGFSFFPQQG-GDLGERMANAFQQAARGYEPVVLIGSDCPDLTPD---- 76 (122)
T ss_dssp ------TSSSEEEEEE----TTHHHHHHHH-TTSEEEE--S-SSHHHHHHHHHHHHHTT-SEEEEE-SS-TT--HH----
T ss_pred ccccccCCCcCEEEEEcCCccHHHHhccccCCCCEEeecCC-CCHHHHHHHHHHHHHcCCCcEEEEcCCCCCCCHH----
Confidence 345567778888888766544443333 5556666665544 4677888777666633334566666666665322
Q ss_pred hHHHHHhhhCCCCCEEEEecCCchh
Q 020805 164 TGPELWKGSGGRIDALVSGIGTGGT 188 (321)
Q Consensus 164 ~~~Ei~~ql~~~~d~vv~p~G~Gg~ 188 (321)
.-.+.++.+ ...|.|+.|+--||-
T Consensus 77 ~l~~A~~~L-~~~d~VlgPa~DGGy 100 (122)
T PF09837_consen 77 DLEQAFEAL-QRHDVVLGPAEDGGY 100 (122)
T ss_dssp HHHHHHHHT-TT-SEEEEEBTTSSE
T ss_pred HHHHHHHHh-ccCCEEEeeccCCCE
Confidence 223344555 345999999988773
No 406
>PRK05854 short chain dehydrogenase; Provisional
Probab=40.32 E-value=1.9e+02 Score=26.18 Aligned_cols=72 Identities=19% Similarity=0.216 Sum_probs=41.4
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCH-HHHHHHHHc--CCEEEEeCCC-CChhHHHHHHHHHHHhC
Q 020805 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSL-ERRIILRAF--GAELVLTDPA-KGMKGAVQKAEEILAKT 142 (321)
Q Consensus 71 ~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~-~~~~~~~~~--Ga~v~~~~~~-~~~~~~~~~a~~~~~~~ 142 (321)
..+||..++--|.++|..-.+.|.+++++....... ..++.++.. +.++.++..+ .+.++..+.+.++.++.
T Consensus 16 ~~lITGas~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~~ 91 (313)
T PRK05854 16 RAVVTGASDGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAEG 91 (313)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHhC
Confidence 667888878888888888888898877765432211 112233322 3455544322 24455556666655543
No 407
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=40.17 E-value=2.4e+02 Score=26.66 Aligned_cols=15 Identities=33% Similarity=0.669 Sum_probs=11.0
Q ss_pred CCCCEEEEecCCchhH
Q 020805 174 GRIDALVSGIGTGGTI 189 (321)
Q Consensus 174 ~~~d~vv~p~G~Gg~~ 189 (321)
.++| +|+++|+|..+
T Consensus 78 ~~~D-~IIaiGGGS~i 92 (386)
T cd08191 78 AGPD-VIIGLGGGSCI 92 (386)
T ss_pred cCCC-EEEEeCCchHH
Confidence 3577 57888888766
No 408
>PLN02306 hydroxypyruvate reductase
Probab=40.12 E-value=2.1e+02 Score=27.15 Aligned_cols=120 Identities=18% Similarity=0.155 Sum_probs=69.7
Q ss_pred CeEEEeeCCChHHHHHHHHHH-HcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCC-ChhHHHHHHHHHHHhCCCeEE
Q 020805 70 ESVLIEPTSGNTGIGLAFMAA-AKQYRLIITMPASMSLERRIILRAFGAELVLTDPAK-GMKGAVQKAEEILAKTPNAYM 147 (321)
Q Consensus 70 ~~~vv~~SsGN~g~AlA~aa~-~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~-~~~~~~~~a~~~~~~~~~~~~ 147 (321)
+++|..-.-|+-|+++|..+. .+|++++.+=|.. +.........+|..+...+... .+. ...-..++.++. +...
T Consensus 165 gktvGIiG~G~IG~~vA~~l~~~fGm~V~~~d~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~L~ell~~s-DiV~ 241 (386)
T PLN02306 165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ-STRLEKFVTAYGQFLKANGEQPVTWK-RASSMEEVLREA-DVIS 241 (386)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCC-chhhhhhhhhhccccccccccccccc-ccCCHHHHHhhC-CEEE
Confidence 356777888999999999974 8999887775432 2221222234443322111100 000 000123344444 5555
Q ss_pred cCCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhH--HHHHHHHHh
Q 020805 148 LQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTI--TGAGKFLKE 198 (321)
Q Consensus 148 ~~~~~~~~~~~~g~~~~~~Ei~~ql~~~~d~vv~p~G~Gg~~--aGi~~~~k~ 198 (321)
++---++ .-+.-+..|.+++| +++.+++-+|-|+++ ..+..+++.
T Consensus 242 lh~Plt~----~T~~lin~~~l~~M--K~ga~lIN~aRG~lVDe~AL~~AL~s 288 (386)
T PLN02306 242 LHPVLDK----TTYHLINKERLALM--KKEAVLVNASRGPVIDEVALVEHLKA 288 (386)
T ss_pred EeCCCCh----hhhhhcCHHHHHhC--CCCeEEEECCCccccCHHHHHHHHHh
Confidence 5332222 33556777888998 579999999999998 566677764
No 409
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=40.09 E-value=62 Score=25.59 Aligned_cols=34 Identities=26% Similarity=0.412 Sum_probs=21.3
Q ss_pred CCCCeEEEeeCCChHH--HHHHHHHHHcCCeEEEEe
Q 020805 67 TPGESVLIEPTSGNTG--IGLAFMAAAKQYRLIITM 100 (321)
Q Consensus 67 ~~g~~~vv~~SsGN~g--~AlA~aa~~~G~~~~ivv 100 (321)
+||.--|+.++|||+. ...+..|+..|++++.+.
T Consensus 102 ~~gDvli~iS~SG~s~~vi~a~~~Ak~~G~~vIalT 137 (138)
T PF13580_consen 102 RPGDVLIVISNSGNSPNVIEAAEEAKERGMKVIALT 137 (138)
T ss_dssp -TT-EEEEEESSS-SHHHHHHHHHHHHTT-EEEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEe
Confidence 4553555566678876 455666999999999875
No 410
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=40.09 E-value=2.4e+02 Score=24.88 Aligned_cols=49 Identities=29% Similarity=0.271 Sum_probs=36.0
Q ss_pred CCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEE
Q 020805 68 PGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAEL 119 (321)
Q Consensus 68 ~g~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v 119 (321)
+|...++...+|..|.+++..|+.+|.+.+...+ ...+.+.++.+|+..
T Consensus 132 ~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~~ 180 (305)
T cd08270 132 LGRRVLVTGASGGVGRFAVQLAALAGAHVVAVVG---SPARAEGLRELGAAE 180 (305)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCcE
Confidence 3556666666689999999999999998555432 356777888888863
No 411
>PRK07574 formate dehydrogenase; Provisional
Probab=40.08 E-value=2.3e+02 Score=26.98 Aligned_cols=106 Identities=8% Similarity=0.105 Sum_probs=66.4
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEcCC
Q 020805 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQ 150 (321)
Q Consensus 71 ~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 150 (321)
++|..-.-|+-|+++|..++.+|++++.+=+...+.. ..+.+|.+ ... +. .++.++. +...++-
T Consensus 193 ktVGIvG~G~IG~~vA~~l~~fG~~V~~~dr~~~~~~---~~~~~g~~--~~~---~l-------~ell~~a-DvV~l~l 256 (385)
T PRK07574 193 MTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHRLPEE---VEQELGLT--YHV---SF-------DSLVSVC-DVVTIHC 256 (385)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCchh---hHhhcCce--ecC---CH-------HHHhhcC-CEEEEcC
Confidence 4577778899999999999999999888755432222 22334532 111 11 2333443 5555443
Q ss_pred CCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhH--HHHHHHHHh
Q 020805 151 FENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTI--TGAGKFLKE 198 (321)
Q Consensus 151 ~~~~~~~~~g~~~~~~Ei~~ql~~~~d~vv~p~G~Gg~~--aGi~~~~k~ 198 (321)
-.++.. ..-+..|.++++ ++..+++-++.|+.+ ..+..+++.
T Consensus 257 Plt~~T----~~li~~~~l~~m--k~ga~lIN~aRG~iVDe~AL~~AL~s 300 (385)
T PRK07574 257 PLHPET----EHLFDADVLSRM--KRGSYLVNTARGKIVDRDAVVRALES 300 (385)
T ss_pred CCCHHH----HHHhCHHHHhcC--CCCcEEEECCCCchhhHHHHHHHHHh
Confidence 323322 234567888888 568899999999987 555566654
No 412
>PRK13984 putative oxidoreductase; Provisional
Probab=39.99 E-value=1.1e+02 Score=30.86 Aligned_cols=51 Identities=20% Similarity=0.285 Sum_probs=38.4
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCC--------------C----HHHHHHHHHcCCEEEE
Q 020805 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM--------------S----LERRIILRAFGAELVL 121 (321)
Q Consensus 71 ~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~--------------~----~~~~~~~~~~Ga~v~~ 121 (321)
..|+...+|..|.+.|...++.|++++|+=.... + ....+.++.+|.+++.
T Consensus 284 ~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~~~i~~~~~~~~~~~~~~~~~~~~gv~~~~ 352 (604)
T PRK13984 284 KKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMRYGIPSYRLPDEALDKDIAFIEALGVKIHL 352 (604)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEeecCCcccCCHHHHHHHHHHHHHCCcEEEC
Confidence 4567777999999999999999999998843321 1 2345678889988753
No 413
>PRK09242 tropinone reductase; Provisional
Probab=39.96 E-value=2.2e+02 Score=24.52 Aligned_cols=56 Identities=18% Similarity=0.094 Sum_probs=35.9
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHH-HHHHHHHc--CCEEEEeCCC
Q 020805 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLE-RRIILRAF--GAELVLTDPA 125 (321)
Q Consensus 70 ~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~-~~~~~~~~--Ga~v~~~~~~ 125 (321)
+..+|+..+|.-|.++|......|.+++++........ ..+.++.. +.++..+..+
T Consensus 10 k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D 68 (257)
T PRK09242 10 QTALITGASKGIGLAIAREFLGLGADVLIVARDADALAQARDELAEEFPEREVHGLAAD 68 (257)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECC
Confidence 36688888899999999998889998766654321111 12233333 6677666543
No 414
>COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=39.95 E-value=86 Score=28.95 Aligned_cols=94 Identities=17% Similarity=0.285 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCe----EEEEecCCCCHHHHHHHHHcCCEEEEeCCCC
Q 020805 51 RIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYR----LIITMPASMSLERRIILRAFGAELVLTDPAK 126 (321)
Q Consensus 51 R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~AlA~aa~~~G~~----~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~ 126 (321)
+-.+....+..+.+.-.+.+ .+++..+=|++-|+|++|....-. .++|+|.+ +.+....
T Consensus 60 ~~~f~v~eql~e~~~~~~~~-illEP~gRnTApAIA~aa~~~~~~~~d~~~lVlpsD----------------H~I~d~~ 122 (333)
T COG0836 60 KYRFIVKEQLPEIDIENAAG-IILEPEGRNTAPAIALAALSATAEGGDALVLVLPSD----------------HVIADEE 122 (333)
T ss_pred HHHHHHHHHHhhhhhccccc-eEeccCCCCcHHHHHHHHHHHHHhCCCcEEEEecCc----------------ceeccHH
Q ss_pred ChhHHHHHHHHHHHhCCCeEEcCCCCCCcchhhhhhch
Q 020805 127 GMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETT 164 (321)
Q Consensus 127 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 164 (321)
.|.++.+.+.+++++ + +.+.-+--|..|..||+.|
T Consensus 123 af~~av~~A~~~A~~--g-~lVTfGI~Pt~PeTGYGYI 157 (333)
T COG0836 123 AFLNAVKKAEKAAEE--G-GIVTFGIPPTRPETGYGYI 157 (333)
T ss_pred HHHHHHHHHHHHHHc--C-CEEEEecCCCCCccCccee
No 415
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=39.95 E-value=48 Score=22.71 Aligned_cols=28 Identities=21% Similarity=0.373 Sum_probs=22.7
Q ss_pred CCChHHHHHHHHHHHcCCeEEEEecCCC
Q 020805 77 TSGNTGIGLAFMAAAKQYRLIITMPASM 104 (321)
Q Consensus 77 SsGN~g~AlA~aa~~~G~~~~ivvp~~~ 104 (321)
.+|-.|.+.|+..++.|.+++|+=..+.
T Consensus 3 GaG~sGl~aA~~L~~~g~~v~v~E~~~~ 30 (68)
T PF13450_consen 3 GAGISGLAAAYYLAKAGYRVTVFEKNDR 30 (68)
T ss_dssp S-SHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred eeCHHHHHHHHHHHHCCCcEEEEecCcc
Confidence 5788999999999999999998865543
No 416
>cd08290 ETR 2-enoyl thioester reductase (ETR). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f
Probab=39.89 E-value=1.8e+02 Score=26.29 Aligned_cols=58 Identities=22% Similarity=0.245 Sum_probs=36.4
Q ss_pred CCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCC-CHHHHHHHHHcCCEEEE
Q 020805 64 GLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM-SLERRIILRAFGAELVL 121 (321)
Q Consensus 64 g~~~~g~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~-~~~~~~~~~~~Ga~v~~ 121 (321)
+.+.+|...+|...+|..|.+++..|+.+|.+++++..... -..+.+.++.+|++-++
T Consensus 142 ~~~~~g~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~~~g~~~~~ 200 (341)
T cd08290 142 VKLQPGDWVIQNGANSAVGQAVIQLAKLLGIKTINVVRDRPDLEELKERLKALGADHVL 200 (341)
T ss_pred cccCCCCEEEEccchhHHHHHHHHHHHHcCCeEEEEEcCCCcchhHHHHHHhcCCCEEE
Confidence 34556645444445588888888899999988766655321 12445556667775443
No 417
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=39.85 E-value=1.6e+02 Score=27.36 Aligned_cols=52 Identities=17% Similarity=0.194 Sum_probs=30.8
Q ss_pred CCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 020805 66 ITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 120 (321)
Q Consensus 66 ~~~g~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~ 120 (321)
+.+|.. |+...+|.-|.+++..|+.+|.+.+++.... ..+.+..+.+|++-+
T Consensus 181 ~~~g~~-VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~--~~~~~~~~~~Ga~~v 232 (360)
T PLN02586 181 TEPGKH-LGVAGLGGLGHVAVKIGKAFGLKVTVISSSS--NKEDEAINRLGADSF 232 (360)
T ss_pred cCCCCE-EEEECCCHHHHHHHHHHHHCCCEEEEEeCCc--chhhhHHHhCCCcEE
Confidence 445544 4445668888888888888888754443222 233445566777543
No 418
>PLN03139 formate dehydrogenase; Provisional
Probab=39.83 E-value=2.3e+02 Score=26.98 Aligned_cols=106 Identities=13% Similarity=0.154 Sum_probs=65.6
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEcCC
Q 020805 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQ 150 (321)
Q Consensus 71 ~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 150 (321)
++|-.-.-|+.|+++|..++.+|++++++=+...+.. ..+..|++. +. +. .++.++- +...++-
T Consensus 200 ktVGIVG~G~IG~~vA~~L~afG~~V~~~d~~~~~~~---~~~~~g~~~--~~---~l-------~ell~~s-DvV~l~l 263 (386)
T PLN03139 200 KTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDPE---LEKETGAKF--EE---DL-------DAMLPKC-DVVVINT 263 (386)
T ss_pred CEEEEEeecHHHHHHHHHHHHCCCEEEEECCCCcchh---hHhhcCcee--cC---CH-------HHHHhhC-CEEEEeC
Confidence 5677778899999999999999999877644322222 223345431 11 11 2333433 5555443
Q ss_pred CCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhH--HHHHHHHHh
Q 020805 151 FENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTI--TGAGKFLKE 198 (321)
Q Consensus 151 ~~~~~~~~~g~~~~~~Ei~~ql~~~~d~vv~p~G~Gg~~--aGi~~~~k~ 198 (321)
|.. ..-..-+..|+++++ +++.+++-+|.|+.+ ..+..+++.
T Consensus 264 ---Plt-~~T~~li~~~~l~~m--k~ga~lIN~aRG~iVDe~AL~~AL~s 307 (386)
T PLN03139 264 ---PLT-EKTRGMFNKERIAKM--KKGVLIVNNARGAIMDTQAVADACSS 307 (386)
T ss_pred ---CCC-HHHHHHhCHHHHhhC--CCCeEEEECCCCchhhHHHHHHHHHc
Confidence 222 122334567888888 478999999999988 555566654
No 419
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=39.65 E-value=2.1e+02 Score=23.44 Aligned_cols=75 Identities=17% Similarity=0.281 Sum_probs=49.7
Q ss_pred CCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecC---------CCCHHHHHHHHH
Q 020805 44 PCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPA---------SMSLERRIILRA 114 (321)
Q Consensus 44 ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~---------~~~~~~~~~~~~ 114 (321)
|.--+-++.....+.+|.+.|- ..-||.+|+|-++.-++-+... .+++++|.-. ..+++..+.++.
T Consensus 7 pG~eNT~~tle~a~erA~elgi----k~~vVAS~tG~tA~k~lemveg-~lkvVvVthh~Gf~e~g~~e~~~E~~~~L~e 81 (186)
T COG1751 7 PGKENTDETLEIAVERAKELGI----KHIVVASSTGYTALKALEMVEG-DLKVVVVTHHAGFEEKGTQEMDEEVRKELKE 81 (186)
T ss_pred CcccchHHHHHHHHHHHHhcCc----ceEEEEecccHHHHHHHHhccc-CceEEEEEeecccccCCceecCHHHHHHHHH
Confidence 4446678888888899988875 2445555668887654444322 2788877642 235677788888
Q ss_pred cCCEEEEeC
Q 020805 115 FGAELVLTD 123 (321)
Q Consensus 115 ~Ga~v~~~~ 123 (321)
.|++|..-.
T Consensus 82 rGa~v~~~s 90 (186)
T COG1751 82 RGAKVLTQS 90 (186)
T ss_pred cCceeeeeh
Confidence 999987554
No 420
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=39.58 E-value=44 Score=30.29 Aligned_cols=31 Identities=16% Similarity=0.127 Sum_probs=25.8
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCeEEEEecC
Q 020805 72 VLIEPTSGNTGIGLAFMAAAKQYRLIITMPA 102 (321)
Q Consensus 72 ~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~ 102 (321)
.|+...+|-.|.++|.+.++.|++++||=..
T Consensus 3 dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~ 33 (356)
T PF01494_consen 3 DVAIVGAGPAGLAAALALARAGIDVTIIERR 33 (356)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTCEEEEEESS
T ss_pred eEEEECCCHHHHHHHHHHHhcccccccchhc
Confidence 4777899999999999999999999998654
No 421
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=39.53 E-value=89 Score=28.35 Aligned_cols=72 Identities=22% Similarity=0.242 Sum_probs=49.1
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHH-HHHHHcCCE--EEEeCCCC-ChhHHHHHHHHHHHhC
Q 020805 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERR-IILRAFGAE--LVLTDPAK-GMKGAVQKAEEILAKT 142 (321)
Q Consensus 71 ~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~-~~~~~~Ga~--v~~~~~~~-~~~~~~~~a~~~~~~~ 142 (321)
..+||..|+--|.++|+.-.+.|.+.++++.......++ +.++..++. ++....+- +.+++.+...+..++.
T Consensus 14 vVvITGASsGIG~~lA~~la~~G~~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~~~~~~f 89 (282)
T KOG1205|consen 14 VVLITGASSGIGEALAYELAKRGAKLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVEWAIRHF 89 (282)
T ss_pred EEEEeCCCcHHHHHHHHHHHhCCCceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHHHHHHHhc
Confidence 678888777789999999999999999999887666666 667666653 44444332 2344555544444443
No 422
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=39.49 E-value=2e+02 Score=26.04 Aligned_cols=49 Identities=22% Similarity=0.250 Sum_probs=32.4
Q ss_pred CCCCCeEEEeeCCChHHHHHHHHHHHcC-CeEEEEecCCCCHHHHHHHHHcCCE
Q 020805 66 ITPGESVLIEPTSGNTGIGLAFMAAAKQ-YRLIITMPASMSLERRIILRAFGAE 118 (321)
Q Consensus 66 ~~~g~~~vv~~SsGN~g~AlA~aa~~~G-~~~~ivvp~~~~~~~~~~~~~~Ga~ 118 (321)
+.++...+|.. +|..|.+++..|+.+| .+.+++.. ++.+.+.++.+|++
T Consensus 165 ~~~~~~vlI~g-~~~vg~~~~~~a~~~g~~~v~~~~~---~~~~~~~~~~~g~~ 214 (340)
T cd05284 165 LDPGSTVVVIG-VGGLGHIAVQILRALTPATVIAVDR---SEEALKLAERLGAD 214 (340)
T ss_pred CCCCCEEEEEc-CcHHHHHHHHHHHHhCCCcEEEEeC---CHHHHHHHHHhCCc
Confidence 44555555555 6668899888999988 66655432 34566677777763
No 423
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=39.42 E-value=44 Score=26.64 Aligned_cols=32 Identities=25% Similarity=0.314 Sum_probs=26.4
Q ss_pred EEeeCCChHHHHHHHHHHHcCCeEEEEecCCC
Q 020805 73 LIEPTSGNTGIGLAFMAAAKQYRLIITMPASM 104 (321)
Q Consensus 73 vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~ 104 (321)
++...+|.-+.+++..++.+|++++++=|...
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e 32 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRPE 32 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-CC
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCcc
Confidence 45678899999999999999999999988743
No 424
>PLN02583 cinnamoyl-CoA reductase
Probab=39.38 E-value=2.2e+02 Score=25.53 Aligned_cols=33 Identities=21% Similarity=0.252 Sum_probs=28.7
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecC
Q 020805 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPA 102 (321)
Q Consensus 70 ~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~ 102 (321)
...+|+..+|--|.+++......|.+++++.+.
T Consensus 7 k~vlVTGatG~IG~~lv~~Ll~~G~~V~~~~R~ 39 (297)
T PLN02583 7 KSVCVMDASGYVGFWLVKRLLSRGYTVHAAVQK 39 (297)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEEEEEcC
Confidence 367888889999999999999999999888764
No 425
>PRK06720 hypothetical protein; Provisional
Probab=39.37 E-value=2.2e+02 Score=23.42 Aligned_cols=30 Identities=17% Similarity=0.208 Sum_probs=22.3
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEe
Q 020805 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITM 100 (321)
Q Consensus 71 ~~vv~~SsGN~g~AlA~aa~~~G~~~~ivv 100 (321)
..+|+..++--|.++|......|.+++++-
T Consensus 18 ~~lVTGa~~GIG~aia~~l~~~G~~V~l~~ 47 (169)
T PRK06720 18 VAIVTGGGIGIGRNTALLLAKQGAKVIVTD 47 (169)
T ss_pred EEEEecCCChHHHHHHHHHHHCCCEEEEEE
Confidence 567777777788888888777887765553
No 426
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=39.37 E-value=1.7e+02 Score=26.48 Aligned_cols=33 Identities=9% Similarity=0.118 Sum_probs=23.6
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCC
Q 020805 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPAS 103 (321)
Q Consensus 71 ~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~ 103 (321)
++++.-.+|-.++|++++....|++-+.++..+
T Consensus 125 k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt 157 (288)
T PRK12749 125 KTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRR 157 (288)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 345556667778999998888898666555544
No 427
>PRK05166 histidinol-phosphate aminotransferase; Provisional
Probab=39.37 E-value=1.9e+02 Score=26.94 Aligned_cols=53 Identities=9% Similarity=-0.107 Sum_probs=30.8
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCC
Q 020805 72 VLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPA 125 (321)
Q Consensus 72 ~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~ 125 (321)
.|+..+++..+..++..+- ..=.-.|+++.-.-..-...++.+|.+++.++.+
T Consensus 90 ~i~~t~G~~~~l~~~~~~~-~~~gd~vli~~P~y~~~~~~~~~~g~~~~~v~~~ 142 (371)
T PRK05166 90 RIILGNGSEDLIAVICRAV-LRPGDRVVTLYPSFPLHEDYPTMMGARVERVTVT 142 (371)
T ss_pred HEEEcCCHHHHHHHHHHHh-cCCCCEEEEcCCChHHHHHHHHHcCCeEEEeecC
Confidence 3665566666655444332 2222345555444344566778899999988753
No 428
>PRK12747 short chain dehydrogenase; Provisional
Probab=39.36 E-value=1.7e+02 Score=25.14 Aligned_cols=54 Identities=15% Similarity=0.073 Sum_probs=35.6
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCC--CHHHHHHHHHcCCEEEEeC
Q 020805 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM--SLERRIILRAFGAELVLTD 123 (321)
Q Consensus 70 ~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~--~~~~~~~~~~~Ga~v~~~~ 123 (321)
...+|+..+|--|.++|......|.++++...... .......++..|.++..+.
T Consensus 5 k~~lItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 60 (252)
T PRK12747 5 KVALVTGASRGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEIQSNGGSAFSIG 60 (252)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHHHhcCCceEEEe
Confidence 36788888899999999999999988776532221 1122334555566665544
No 429
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=39.36 E-value=1.6e+02 Score=27.36 Aligned_cols=53 Identities=21% Similarity=0.206 Sum_probs=37.1
Q ss_pred eEEEeeCCC--hHHHHHHHHHHHcCCeEEEEecCCC--CHHHHHH----HHHcCCEEEEeC
Q 020805 71 SVLIEPTSG--NTGIGLAFMAAAKQYRLIITMPASM--SLERRII----LRAFGAELVLTD 123 (321)
Q Consensus 71 ~~vv~~SsG--N~g~AlA~aa~~~G~~~~ivvp~~~--~~~~~~~----~~~~Ga~v~~~~ 123 (321)
.+|+-...+ |.+.+++.+++++|++++++.|+.. ++..++. .+..|.++..+.
T Consensus 156 ~~va~vGd~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 216 (331)
T PRK02102 156 LKLAYVGDGRNNMANSLMVGGAKLGMDVRICAPKELWPEEELVALAREIAKETGAKITITE 216 (331)
T ss_pred CEEEEECCCcccHHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHHHHHcCCeEEEEc
Confidence 445544554 8899999999999999999999863 3333322 345788887766
No 430
>TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase. This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041).
Probab=39.31 E-value=90 Score=29.38 Aligned_cols=55 Identities=16% Similarity=0.107 Sum_probs=36.3
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCC
Q 020805 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPA 125 (321)
Q Consensus 71 ~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~ 125 (321)
..++..++|..+..++..+-..+=.-.|++|..+-......+...|+++++++-+
T Consensus 47 ~~~v~~~sgt~aL~~~l~al~~~pGd~Viv~~~t~~~~~~~~~~~G~~~v~vd~d 101 (376)
T TIGR02379 47 KKALLTPSCTAALEMAALLLDIQPGDEVIMPSYTFVSTANAFVLRGAKIVFVDIR 101 (376)
T ss_pred CeEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCCcHHHHHHHHHcCCEEEEEecC
Confidence 4466667676665555443222223467778776666677788899999999854
No 431
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=39.30 E-value=56 Score=27.22 Aligned_cols=41 Identities=29% Similarity=0.386 Sum_probs=29.5
Q ss_pred chHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHHhcCCCcEEEEEe
Q 020805 163 TTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIE 209 (321)
Q Consensus 163 ~~~~Ei~~ql~~~~d~vv~p~G~Gg~~aGi~~~~k~~~~~~~vigv~ 209 (321)
..+.++.++ +-.||.|+.-.|=|.++ .+|+.+|++++++=.
T Consensus 55 ~a~~~L~~~-Gf~PDvI~~H~GWGe~L-----flkdv~P~a~li~Y~ 95 (171)
T PF12000_consen 55 RAARQLRAQ-GFVPDVIIAHPGWGETL-----FLKDVFPDAPLIGYF 95 (171)
T ss_pred HHHHHHHHc-CCCCCEEEEcCCcchhh-----hHHHhCCCCcEEEEE
Confidence 333444444 45699888888877764 899999999998843
No 432
>PLN02253 xanthoxin dehydrogenase
Probab=39.30 E-value=1.8e+02 Score=25.55 Aligned_cols=31 Identities=10% Similarity=0.067 Sum_probs=26.2
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEec
Q 020805 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMP 101 (321)
Q Consensus 71 ~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp 101 (321)
..+|+..+|.-|.++|......|.+++++-.
T Consensus 20 ~~lItGas~gIG~~la~~l~~~G~~v~~~~~ 50 (280)
T PLN02253 20 VALVTGGATGIGESIVRLFHKHGAKVCIVDL 50 (280)
T ss_pred EEEEECCCchHHHHHHHHHHHcCCEEEEEeC
Confidence 6788889999999999998889998777643
No 433
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=39.29 E-value=1.5e+02 Score=27.92 Aligned_cols=14 Identities=29% Similarity=0.432 Sum_probs=10.9
Q ss_pred CCCEEEEecCCchhH
Q 020805 175 RIDALVSGIGTGGTI 189 (321)
Q Consensus 175 ~~d~vv~p~G~Gg~~ 189 (321)
++| +|+++|+|..+
T Consensus 87 ~~D-~IIaiGGGS~i 100 (382)
T PRK10624 87 GAD-YLIAIGGGSPQ 100 (382)
T ss_pred CCC-EEEEeCChHHH
Confidence 578 67889988776
No 434
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=39.23 E-value=1.2e+02 Score=32.75 Aligned_cols=51 Identities=12% Similarity=0.161 Sum_probs=39.1
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCC--------------CH----HHHHHHHHcCCEEEE
Q 020805 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM--------------SL----ERRIILRAFGAELVL 121 (321)
Q Consensus 71 ~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~--------------~~----~~~~~~~~~Ga~v~~ 121 (321)
+.|+.-.+|..|.+.|+..++.|++++||=.... +. ..++.++.+|.+++.
T Consensus 540 KkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~~IP~~Rlp~evL~~die~l~~~GVe~~~ 608 (1019)
T PRK09853 540 KKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKNIIPQFRIPAELIQHDIEFVKAHGVKFEF 608 (1019)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceeeecccccccHHHHHHHHHHHHHcCCEEEe
Confidence 5688899999999999999999999999864321 21 224567888988764
No 435
>PRK05839 hypothetical protein; Provisional
Probab=39.19 E-value=3.2e+02 Score=25.39 Aligned_cols=79 Identities=10% Similarity=-0.101 Sum_probs=42.0
Q ss_pred CCCCchhhHHHHHHHHHHHHcCC-CCCCCeEEEeeCCChHHHHHHHHHHHc-CCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 020805 43 EPCSSVKDRIGYSMISDAEAKGL-ITPGESVLIEPTSGNTGIGLAFMAAAK-QYRLIITMPASMSLERRIILRAFGAELV 120 (321)
Q Consensus 43 ~ptGS~K~R~a~~~l~~a~~~g~-~~~g~~~vv~~SsGN~g~AlA~aa~~~-G~~~~ivvp~~~~~~~~~~~~~~Ga~v~ 120 (321)
.+.|....|-+..-... .+.|. +.+ ..|+..+++..+..++..+-.. +-.-.|++|.-.-..-...++.+|++++
T Consensus 58 ~~~G~~~lr~aia~~l~-~~~g~~~~~--~~I~it~G~~~al~~~~~~~~~~~~gd~vlv~~P~y~~~~~~~~~~g~~v~ 134 (374)
T PRK05839 58 KSAGEESLREAQRGFFK-RRFKIELKE--NELIPTFGTREVLFNFPQFVLFDKQNPTIAYPNPFYQIYEGAAIASRAKVL 134 (374)
T ss_pred CCCCCHHHHHHHHHHHH-HHhCCCCCc--ceEEEecCcHHHHHHHHHHHhcCCCCCEEEECCCCchhhHHHHHhcCCEEE
Confidence 34576677765432221 12232 344 3466566666655444333322 2224555555444444556788999999
Q ss_pred EeCC
Q 020805 121 LTDP 124 (321)
Q Consensus 121 ~~~~ 124 (321)
.++.
T Consensus 135 ~v~~ 138 (374)
T PRK05839 135 LMPL 138 (374)
T ss_pred Eeec
Confidence 8875
No 436
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=39.12 E-value=2.6e+02 Score=24.22 Aligned_cols=50 Identities=14% Similarity=0.091 Sum_probs=31.1
Q ss_pred EeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCC
Q 020805 74 IEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 124 (321)
Q Consensus 74 v~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~ 124 (321)
|+.++--...++...++.++ ++.|=.-.-.++...++....||+.++.+.
T Consensus 44 ITl~sp~a~e~I~~l~~~~p-~~lIGAGTVL~~~q~~~a~~aGa~fiVsP~ 93 (211)
T COG0800 44 ITLRTPAALEAIRALAKEFP-EALIGAGTVLNPEQARQAIAAGAQFIVSPG 93 (211)
T ss_pred EecCCCCHHHHHHHHHHhCc-ccEEccccccCHHHHHHHHHcCCCEEECCC
Confidence 34455555666666666666 444433333466677777777888877775
No 437
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=39.05 E-value=2.5e+02 Score=24.31 Aligned_cols=69 Identities=14% Similarity=0.195 Sum_probs=41.0
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHH-HHcCCEEEEeCCCC-ChhHHHHHHHHHHHh
Q 020805 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIIL-RAFGAELVLTDPAK-GMKGAVQKAEEILAK 141 (321)
Q Consensus 70 ~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~-~~~Ga~v~~~~~~~-~~~~~~~~a~~~~~~ 141 (321)
...+|+..+|--|.++|......|.+++++-.. ..+.+.+ +.++.++..+..+. +.++..+...+..++
T Consensus 7 k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~---~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 77 (263)
T PRK06200 7 QVALITGGGSGIGRALVERFLAEGARVAVLERS---AEKLASLRQRFGDHVLVVEGDVTSYADNQRAVDQTVDA 77 (263)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHHHhCCcceEEEccCCCHHHHHHHHHHHHHh
Confidence 367888888889999999988999987665432 2333333 33455555444322 233444444444443
No 438
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=38.95 E-value=1.3e+02 Score=28.57 Aligned_cols=50 Identities=20% Similarity=0.167 Sum_probs=32.4
Q ss_pred CCCCCCCeEEEeeCCChHHHHHHHHHHHcCC--eEEEEecCCCCHHHHHHHHHc
Q 020805 64 GLITPGESVLIEPTSGNTGIGLAFMAAAKQY--RLIITMPASMSLERRIILRAF 115 (321)
Q Consensus 64 g~~~~g~~~vv~~SsGN~g~AlA~aa~~~G~--~~~ivvp~~~~~~~~~~~~~~ 115 (321)
..+++|.+.+|...+|--|..++..|+.+|. ..++++ +.++.|++.++.+
T Consensus 171 ~~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~--~~~~~r~~~a~~~ 222 (410)
T cd08238 171 MGIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVT--DVNDERLARAQRL 222 (410)
T ss_pred cCCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEE--cCCHHHHHHHHHh
Confidence 4456765656655578899888888888875 223332 3345677777765
No 439
>PRK06487 glycerate dehydrogenase; Provisional
Probab=38.81 E-value=2.7e+02 Score=25.50 Aligned_cols=99 Identities=19% Similarity=0.189 Sum_probs=66.0
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEcCC
Q 020805 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQ 150 (321)
Q Consensus 71 ~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 150 (321)
++|....-|+-|+++|..++.+|++++.+-+... .. ..+ .+ + ..++.++. +...++-
T Consensus 149 ktvgIiG~G~IG~~vA~~l~~fgm~V~~~~~~~~-~~--------~~~--~~----~-------l~ell~~s-Div~l~l 205 (317)
T PRK06487 149 KTLGLLGHGELGGAVARLAEAFGMRVLIGQLPGR-PA--------RPD--RL----P-------LDELLPQV-DALTLHC 205 (317)
T ss_pred CEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCC-cc--------ccc--cc----C-------HHHHHHhC-CEEEECC
Confidence 5677788899999999999999999887754311 10 000 00 1 23344444 5555433
Q ss_pred CCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhH--HHHHHHHHh
Q 020805 151 FENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTI--TGAGKFLKE 198 (321)
Q Consensus 151 ~~~~~~~~~g~~~~~~Ei~~ql~~~~d~vv~p~G~Gg~~--aGi~~~~k~ 198 (321)
|.+ ..-+.-+..|.++++ +++.+++-+|-|+.+ ..+..++++
T Consensus 206 ---Plt-~~T~~li~~~~~~~m--k~ga~lIN~aRG~vVde~AL~~AL~~ 249 (317)
T PRK06487 206 ---PLT-EHTRHLIGARELALM--KPGALLINTARGGLVDEQALADALRS 249 (317)
T ss_pred ---CCC-hHHhcCcCHHHHhcC--CCCeEEEECCCccccCHHHHHHHHHc
Confidence 222 223566778889998 579999999999997 677777774
No 440
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=38.76 E-value=2.2e+02 Score=24.23 Aligned_cols=114 Identities=11% Similarity=0.119 Sum_probs=61.1
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHH---------------HcCCEEEEeCCCCChhHHHHHH
Q 020805 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILR---------------AFGAELVLTDPAKGMKGAVQKA 135 (321)
Q Consensus 71 ~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~---------------~~Ga~v~~~~~~~~~~~~~~~a 135 (321)
+.++..++|..|...|..-...|.+.+|+-|+-.+.. .+... .-++.+++...+ .++.....
T Consensus 11 k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~~~~l-~~l~~~~~i~~~~~~~~~~~l~~adlViaaT~--d~elN~~i 87 (202)
T PRK06718 11 KRVVIVGGGKVAGRRAITLLKYGAHIVVISPELTENL-VKLVEEGKIRWKQKEFEPSDIVDAFLVIAATN--DPRVNEQV 87 (202)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCHHH-HHHHhCCCEEEEecCCChhhcCCceEEEEcCC--CHHHHHHH
Confidence 4577788899998888887788888888876543321 11111 124444444322 12333334
Q ss_pred HHHHHhCCCeEEcCCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHHhc
Q 020805 136 EEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEK 199 (321)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~Ei~~ql~~~~d~vv~p~G~Gg~~aGi~~~~k~~ 199 (321)
.+.+++. . +++--++|.. + ..+.+-+.+ -+-+.+++.|+|..-.+++.+|..
T Consensus 88 ~~~a~~~-~--lvn~~d~~~~---~-~f~~Pa~~~-----~g~l~iaIsT~G~sP~la~~lr~~ 139 (202)
T PRK06718 88 KEDLPEN-A--LFNVITDAES---G-NVVFPSALH-----RGKLTISVSTDGASPKLAKKIRDE 139 (202)
T ss_pred HHHHHhC-C--cEEECCCCcc---C-eEEEeeEEE-----cCCeEEEEECCCCChHHHHHHHHH
Confidence 4444332 2 2333333332 1 111111111 244888888888888888888753
No 441
>PRK08912 hypothetical protein; Provisional
Probab=38.60 E-value=3.3e+02 Score=25.34 Aligned_cols=79 Identities=11% Similarity=0.074 Sum_probs=44.1
Q ss_pred CCCCchhhHHHHHHHHHHHHcCC-CCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q 020805 43 EPCSSVKDRIGYSMISDAEAKGL-ITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 121 (321)
Q Consensus 43 ~ptGS~K~R~a~~~l~~a~~~g~-~~~g~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~ 121 (321)
.+.|....|-+...... ...|. ..+. ..|+..+++..+..++..+-. +-.-.|+++.-.-..-...++.+|++++.
T Consensus 61 ~~~G~~~lr~~ia~~~~-~~~g~~~~~~-~~i~~t~G~~~al~~~~~~~~-~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~ 137 (387)
T PRK08912 61 PMMGLPELRQAVAAHYA-RFQGLDLDPE-TEVMVTSGATEALAAALLALV-EPGDEVVLFQPLYDAYLPLIRRAGGVPRL 137 (387)
T ss_pred CCCCcHHHHHHHHHHHH-HHhCCCCCCc-ccEEEeCCcHHHHHHHHHHhc-CCCCEEEEeCCCchhhHHHHHHcCCEEEE
Confidence 34566666654432221 12232 2332 146767777887766655432 22235555654444445677899999988
Q ss_pred eCC
Q 020805 122 TDP 124 (321)
Q Consensus 122 ~~~ 124 (321)
++-
T Consensus 138 ~~~ 140 (387)
T PRK08912 138 VRL 140 (387)
T ss_pred Eec
Confidence 764
No 442
>smart00822 PKS_KR This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group.
Probab=38.59 E-value=1.9e+02 Score=22.60 Aligned_cols=54 Identities=24% Similarity=0.266 Sum_probs=32.6
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEe-cCCCCHHH----HHHHHHcCCEEEEeCC
Q 020805 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITM-PASMSLER----RIILRAFGAELVLTDP 124 (321)
Q Consensus 71 ~~vv~~SsGN~g~AlA~aa~~~G~~~~ivv-p~~~~~~~----~~~~~~~Ga~v~~~~~ 124 (321)
..+|+..+|..|.+++......|...++++ ....+... ++.++..|.++..+..
T Consensus 2 ~~li~Ga~~~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 60 (180)
T smart00822 2 TYLITGGLGGLGLELARWLAERGARHLVLLSRSGPDAPGAAELLAELEALGAEVTVVAC 60 (180)
T ss_pred EEEEEcCCChHHHHHHHHHHHhhCCeEEEEeCCCCCCccHHHHHHHHHhcCCeEEEEEC
Confidence 347777788899999888888887544443 32222111 2455556666655543
No 443
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=38.56 E-value=2.1e+02 Score=26.20 Aligned_cols=104 Identities=13% Similarity=0.016 Sum_probs=64.4
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEcCC
Q 020805 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQ 150 (321)
Q Consensus 71 ~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 150 (321)
++|..-.-|+-|+.+|..++.+|++++++-+..... -+.+. +... + ...++.++. +...++-
T Consensus 137 ~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~~--------~~~~~--~~~~---~----~l~e~l~~a-Dvvv~~l 198 (312)
T PRK15469 137 FTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSW--------PGVQS--FAGR---E----ELSAFLSQT-RVLINLL 198 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCC--------CCcee--eccc---c----cHHHHHhcC-CEEEECC
Confidence 567777889999999999999999998885532111 02111 1111 1 122333443 4444333
Q ss_pred CCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhH--HHHHHHHHh
Q 020805 151 FENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTI--TGAGKFLKE 198 (321)
Q Consensus 151 ~~~~~~~~~g~~~~~~Ei~~ql~~~~d~vv~p~G~Gg~~--aGi~~~~k~ 198 (321)
-.++ .-...+..+.++++ +++.+++-+|-|+.+ ..+..++++
T Consensus 199 Plt~----~T~~li~~~~l~~m--k~ga~lIN~aRG~vVde~aL~~aL~~ 242 (312)
T PRK15469 199 PNTP----ETVGIINQQLLEQL--PDGAYLLNLARGVHVVEDDLLAALDS 242 (312)
T ss_pred CCCH----HHHHHhHHHHHhcC--CCCcEEEECCCccccCHHHHHHHHhc
Confidence 2222 22344567788888 468899999999987 566667764
No 444
>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et
Probab=38.56 E-value=2.5e+02 Score=24.47 Aligned_cols=50 Identities=34% Similarity=0.466 Sum_probs=34.6
Q ss_pred CCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCC
Q 020805 64 GLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGA 117 (321)
Q Consensus 64 g~~~~g~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga 117 (321)
+.+.+|...+|...+|..|.+++..++..|++.+++.+.. +.+.++.+|+
T Consensus 140 ~~~~~~~~vlv~g~~g~~g~~~~~~a~~~g~~v~~~~~~~----~~~~~~~~g~ 189 (309)
T cd05289 140 GGLKAGQTVLIHGAAGGVGSFAVQLAKARGARVIATASAA----NADFLRSLGA 189 (309)
T ss_pred cCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEecch----hHHHHHHcCC
Confidence 4456665555555568999999999999999876665422 4555566775
No 445
>PRK08068 transaminase; Reviewed
Probab=38.53 E-value=3.3e+02 Score=25.37 Aligned_cols=77 Identities=9% Similarity=-0.083 Sum_probs=41.7
Q ss_pred CCchhhHHHHHHHHHHHHcCC-CCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeC
Q 020805 45 CSSVKDRIGYSMISDAEAKGL-ITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTD 123 (321)
Q Consensus 45 tGS~K~R~a~~~l~~a~~~g~-~~~g~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~ 123 (321)
.|.-..|-+....... +.|. +.++ ..|+..+++..+..++..+ ..+-.-.|++|.-+-..-...++.+|++++.++
T Consensus 70 ~g~~~lr~aia~~~~~-~~g~~~~~~-~~i~it~G~~~~l~~~~~~-~~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~i~ 146 (389)
T PRK08068 70 RGYPFLKEAAADFYKR-EYGVTLDPE-TEVAILFGGKAGLVELPQC-LMNPGDTILVPDPGYPDYLSGVALARAQFETMP 146 (389)
T ss_pred CCCHHHHHHHHHHHHH-HhCCCCCCC-ccEEEcCCcHHHHHHHHHH-hCCCCCEEEEcCCCCcchHHHHHhcCCEEEEee
Confidence 5555566544332221 2242 3332 1366666667766654332 233334566666444444556788999999887
Q ss_pred C
Q 020805 124 P 124 (321)
Q Consensus 124 ~ 124 (321)
-
T Consensus 147 ~ 147 (389)
T PRK08068 147 L 147 (389)
T ss_pred c
Confidence 5
No 446
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=38.38 E-value=1.3e+02 Score=28.96 Aligned_cols=53 Identities=19% Similarity=0.081 Sum_probs=39.7
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCC-eEEEEecCC-----CCHHHHHHHHHcCCEEEEeC
Q 020805 71 SVLIEPTSGNTGIGLAFMAAAKQY-RLIITMPAS-----MSLERRIILRAFGAELVLTD 123 (321)
Q Consensus 71 ~~vv~~SsGN~g~AlA~aa~~~G~-~~~ivvp~~-----~~~~~~~~~~~~Ga~v~~~~ 123 (321)
+.|+...+||.|.-+|..+.++|. +++++.+.. ......+.++..|.+++.-.
T Consensus 274 ~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~~~~~~~~~~~~~~~~~GV~i~~~~ 332 (457)
T PRK11749 274 KRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGREEMPASEEEVEHAKEEGVEFEWLA 332 (457)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHHHHHHHCCCEEEecC
Confidence 457778899999999999999998 788876542 13445667788888876543
No 447
>cd01011 nicotinamidase Nicotinamidase/pyrazinamidase (PZase). Nicotinamidase, a ubiquitous enzyme in prokaryotes, converts nicotinamide to nicotinic acid (niacin) and ammonia, which in turn can be recycled to make nicotinamide adenine dinucleotide (NAD). The same enzyme is also called pyrazinamidase, because in converts the tuberculosis drug pyrazinamide (PZA) into its active form pyrazinoic acid (POA).
Probab=38.29 E-value=1.8e+02 Score=24.43 Aligned_cols=61 Identities=13% Similarity=0.098 Sum_probs=39.4
Q ss_pred HHHHHHHcCCCCCCCeEEEeeCCChHH-HHHHHHHHHcCCeEEEEecCCCC------HHHHHHHHHcCCEEE
Q 020805 56 MISDAEAKGLITPGESVLIEPTSGNTG-IGLAFMAAAKQYRLIITMPASMS------LERRIILRAFGAELV 120 (321)
Q Consensus 56 ~l~~a~~~g~~~~g~~~vv~~SsGN~g-~AlA~aa~~~G~~~~ivvp~~~~------~~~~~~~~~~Ga~v~ 120 (321)
+.....++|. ...+++.-..|++ .+.|..+...|++++++.....+ ..-++.|+..|++|+
T Consensus 129 L~~~L~~~~i----~~lii~G~~t~~CV~~T~~~a~~~g~~v~v~~Da~~~~~~~~~~~al~~~~~~G~~i~ 196 (196)
T cd01011 129 LAEYLRERGI----DRVDVVGLATDYCVKATALDALKAGFEVRVLEDACRAVDPETIERAIEEMKEAGVVLV 196 (196)
T ss_pred HHHHHHHCCC----CEEEEEEecccHHHHHHHHHHHHCCCEEEEeccccCCCCHHHHHHHHHHHHHccCEEC
Confidence 3344445565 2556666667888 46677788899998888765332 233666777788763
No 448
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=38.28 E-value=95 Score=29.95 Aligned_cols=46 Identities=20% Similarity=0.165 Sum_probs=32.5
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEE
Q 020805 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAEL 119 (321)
Q Consensus 71 ~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v 119 (321)
++++....|+-|..+|..++.+|.+++++ .. .+.+.......|.++
T Consensus 213 k~VlViG~G~IG~~vA~~lr~~Ga~ViV~-d~--dp~ra~~A~~~G~~v 258 (425)
T PRK05476 213 KVVVVAGYGDVGKGCAQRLRGLGARVIVT-EV--DPICALQAAMDGFRV 258 (425)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEE-cC--CchhhHHHHhcCCEe
Confidence 56888889999999999999999975554 22 233444444557664
No 449
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=38.18 E-value=3.1e+02 Score=24.87 Aligned_cols=51 Identities=25% Similarity=0.391 Sum_probs=33.3
Q ss_pred cCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCC
Q 020805 63 KGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGA 117 (321)
Q Consensus 63 ~g~~~~g~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga 117 (321)
...+.++...+|.. .|..|.++...|+.+|++.+++... ..+.+.++.+|+
T Consensus 160 ~~~~~~~~~vlV~g-~g~vg~~~~~~a~~~G~~vi~~~~~---~~~~~~~~~~g~ 210 (345)
T cd08260 160 QARVKPGEWVAVHG-CGGVGLSAVMIASALGARVIAVDID---DDKLELARELGA 210 (345)
T ss_pred ccCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCeEEEEeCC---HHHHHHHHHhCC
Confidence 34455565555655 6888888888888888876555332 345566666776
No 450
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=38.12 E-value=1.3e+02 Score=24.37 Aligned_cols=44 Identities=27% Similarity=0.228 Sum_probs=33.2
Q ss_pred EEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEE
Q 020805 73 LIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAEL 119 (321)
Q Consensus 73 vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v 119 (321)
|-.-.-|+.|.++|......|++++++ +..+.+.+.+...|+++
T Consensus 4 Ig~IGlG~mG~~~a~~L~~~g~~v~~~---d~~~~~~~~~~~~g~~~ 47 (163)
T PF03446_consen 4 IGFIGLGNMGSAMARNLAKAGYEVTVY---DRSPEKAEALAEAGAEV 47 (163)
T ss_dssp EEEE--SHHHHHHHHHHHHTTTEEEEE---ESSHHHHHHHHHTTEEE
T ss_pred EEEEchHHHHHHHHHHHHhcCCeEEee---ccchhhhhhhHHhhhhh
Confidence 444567999999999999999999887 35567888888777443
No 451
>PRK12827 short chain dehydrogenase; Provisional
Probab=38.08 E-value=2.5e+02 Score=23.80 Aligned_cols=56 Identities=23% Similarity=0.159 Sum_probs=37.8
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCC-CHHH----HHHHHHcCCEEEEeCCC
Q 020805 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM-SLER----RIILRAFGAELVLTDPA 125 (321)
Q Consensus 70 ~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~-~~~~----~~~~~~~Ga~v~~~~~~ 125 (321)
+..+|+..+|--|.++|......|.+++++..... ...+ ...+...|.++..+..+
T Consensus 7 ~~ilItGasg~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 67 (249)
T PRK12827 7 RRVLITGGSGGLGRAIAVRLAADGADVIVLDIHPMRGRAEADAVAAGIEAAGGKALGLAFD 67 (249)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCeEEEEcCcccccHHHHHHHHHHHHhcCCcEEEEEcc
Confidence 36788888899999999988889998777654221 1222 23455667777666543
No 452
>PRK07326 short chain dehydrogenase; Provisional
Probab=38.02 E-value=2.4e+02 Score=23.81 Aligned_cols=32 Identities=28% Similarity=0.332 Sum_probs=26.5
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEec
Q 020805 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMP 101 (321)
Q Consensus 70 ~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp 101 (321)
...+|+..+|.-|.++|......|.+++++..
T Consensus 7 ~~ilItGatg~iG~~la~~l~~~g~~V~~~~r 38 (237)
T PRK07326 7 KVALITGGSKGIGFAIAEALLAEGYKVAITAR 38 (237)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCCCEEEEeeC
Confidence 36788888999999999998888999777654
No 453
>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=37.99 E-value=2.6e+02 Score=25.31 Aligned_cols=54 Identities=30% Similarity=0.418 Sum_probs=36.8
Q ss_pred HcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE
Q 020805 62 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAE 118 (321)
Q Consensus 62 ~~g~~~~g~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~ 118 (321)
+.+.+.+|...+|. .+|-.|.+++..++.+|.+.++.+.. ++.+.+.++.+|++
T Consensus 155 ~~~~~~~g~~VlI~-g~g~vg~~~~~la~~~G~~~v~~~~~--~~~~~~~~~~~g~~ 208 (341)
T cd08262 155 RRARLTPGEVALVI-GCGPIGLAVIAALKARGVGPIVASDF--SPERRALALAMGAD 208 (341)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCcEEEEECC--CHHHHHHHHHcCCc
Confidence 44556666555555 45888888888899999876555433 45777777778874
No 454
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=37.95 E-value=2.4e+02 Score=25.63 Aligned_cols=51 Identities=24% Similarity=0.468 Sum_probs=34.1
Q ss_pred CCCCCCCeEEEeeCCChHHHHHHHHHHHcC-CeEEEEecCCCCHHHHHHHHHcCCE
Q 020805 64 GLITPGESVLIEPTSGNTGIGLAFMAAAKQ-YRLIITMPASMSLERRIILRAFGAE 118 (321)
Q Consensus 64 g~~~~g~~~vv~~SsGN~g~AlA~aa~~~G-~~~~ivvp~~~~~~~~~~~~~~Ga~ 118 (321)
..+++|...+|. .+|..|.+++..|+.+| .++++ + +.+..|...++.+|++
T Consensus 162 ~~~~~g~~vlI~-g~g~~g~~~~~~a~~~G~~~v~~-~--~~~~~~~~~~~~~g~~ 213 (345)
T cd08286 162 GKVKPGDTVAIV-GAGPVGLAALLTAQLYSPSKIIM-V--DLDDNRLEVAKKLGAT 213 (345)
T ss_pred cCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEE-E--cCCHHHHHHHHHhCCC
Confidence 345566566664 56899999888999999 55433 3 3345666777777763
No 455
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=37.74 E-value=2.7e+02 Score=24.01 Aligned_cols=69 Identities=13% Similarity=0.080 Sum_probs=43.5
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHh
Q 020805 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAK 141 (321)
Q Consensus 70 ~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~ 141 (321)
+..+|+..+|--|.++|......|.++++..... +.+.+.++..+...+.++-. +.++..+...+..++
T Consensus 8 k~~lItGas~gIG~~~a~~l~~~G~~v~~~~~~~--~~~~~~l~~~~~~~~~~Dl~-~~~~~~~~~~~~~~~ 76 (255)
T PRK06463 8 KVALITGGTRGIGRAIAEAFLREGAKVAVLYNSA--ENEAKELREKGVFTIKCDVG-NRDQVKKSKEVVEKE 76 (255)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCc--HHHHHHHHhCCCeEEEecCC-CHHHHHHHHHHHHHH
Confidence 3678888889999999999888998876654333 34445555556666655543 334444444444443
No 456
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=37.74 E-value=1.9e+02 Score=26.95 Aligned_cols=22 Identities=32% Similarity=0.382 Sum_probs=13.6
Q ss_pred HHHhhhC-CCCCEEEEecCCchhH
Q 020805 167 ELWKGSG-GRIDALVSGIGTGGTI 189 (321)
Q Consensus 167 Ei~~ql~-~~~d~vv~p~G~Gg~~ 189 (321)
++.+++. .++| +|+++|+|..+
T Consensus 74 ~~~~~~~~~~~D-~IIavGGGSvi 96 (357)
T cd08181 74 EAVEIAKKFNAD-FVIGIGGGSPL 96 (357)
T ss_pred HHHHHHHhcCCC-EEEEeCCchHH
Confidence 4444432 2567 67788888766
No 457
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=37.66 E-value=3.4e+02 Score=25.15 Aligned_cols=105 Identities=18% Similarity=0.134 Sum_probs=68.3
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEcCC
Q 020805 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQ 150 (321)
Q Consensus 71 ~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 150 (321)
+++-.-..|+=|+++|..++-+|++...+-+... +...+. .+++- ++ ..++.++. +...++-
T Consensus 147 ktvGIiG~GrIG~avA~r~~~Fgm~v~y~~~~~~-~~~~~~---~~~~y--~~-----------l~ell~~s-Dii~l~~ 208 (324)
T COG1052 147 KTLGIIGLGRIGQAVARRLKGFGMKVLYYDRSPN-PEAEKE---LGARY--VD-----------LDELLAES-DIISLHC 208 (324)
T ss_pred CEEEEECCCHHHHHHHHHHhcCCCEEEEECCCCC-hHHHhh---cCcee--cc-----------HHHHHHhC-CEEEEeC
Confidence 4566667789999999998888887777765543 222221 22221 11 23455554 5554433
Q ss_pred CCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhH--HHHHHHHHhc
Q 020805 151 FENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTI--TGAGKFLKEK 199 (321)
Q Consensus 151 ~~~~~~~~~g~~~~~~Ei~~ql~~~~d~vv~p~G~Gg~~--aGi~~~~k~~ 199 (321)
-.++ .=+..+..|.++++ ++.++++-+|-|+++ .++..++++.
T Consensus 209 Plt~----~T~hLin~~~l~~m--k~ga~lVNtaRG~~VDe~ALi~AL~~g 253 (324)
T COG1052 209 PLTP----ETRHLINAEELAKM--KPGAILVNTARGGLVDEQALIDALKSG 253 (324)
T ss_pred CCCh----HHhhhcCHHHHHhC--CCCeEEEECCCccccCHHHHHHHHHhC
Confidence 2222 23566788889998 578999999999997 7788888863
No 458
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=37.53 E-value=3.9e+02 Score=25.87 Aligned_cols=122 Identities=11% Similarity=0.030 Sum_probs=57.6
Q ss_pred HHHHHHHHHcCCeEEEEecCC--CCHHHHHHHHHcCCEEEEeCCC-CChhHHHHHHHHHHHhCCCeEEcCCCCCCcc---
Q 020805 83 IGLAFMAAAKQYRLIITMPAS--MSLERRIILRAFGAELVLTDPA-KGMKGAVQKAEEILAKTPNAYMLQQFENPAN--- 156 (321)
Q Consensus 83 ~AlA~aa~~~G~~~~ivvp~~--~~~~~~~~~~~~Ga~v~~~~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--- 156 (321)
.+++.+.++.|+++..|-|.. ..+.. .....|....-.+.- .+.+...+...+++++. +...+..-.....
T Consensus 22 ~~L~~~L~~~G~~V~~fK~Gpd~~d~~~--~~~~~g~~~~~ld~~~~~~~~v~~~~~~~~~~~-D~vlVEGagGl~~g~~ 98 (451)
T PRK01077 22 LGLMRALRRRGLRVQPFKVGPDYIDPAY--HTAATGRPSRNLDSWMMGEELVRALFARAAQGA-DIAVIEGVMGLFDGAG 98 (451)
T ss_pred HHHHHHHHhCCCCcceeecCCCcccHHH--HHHHhCCCcccCCceeCCHHHHHHHHHHhcccC-CEEEEECCCccccCCc
Confidence 344455677788888887742 12221 123344432222211 11223333334443333 4444432211111
Q ss_pred hhhhhhchHHHHHhhhCCCCCEEEEecCC-chhHHHHHHHHHhcCCCcEEEEEe
Q 020805 157 PKIHYETTGPELWKGSGGRIDALVSGIGT-GGTITGAGKFLKEKNPNIKLYGIE 209 (321)
Q Consensus 157 ~~~g~~~~~~Ei~~ql~~~~d~vv~p~G~-Gg~~aGi~~~~k~~~~~~~vigv~ 209 (321)
+... .....+|.+.+ .-|-.+|+.... +.+++.+..++....++.++.||=
T Consensus 99 ~~~~-~~s~adiA~~l-~~pviLV~~~~~~~~~~a~l~~~~~~~~~~i~i~GvI 150 (451)
T PRK01077 99 SDPD-EGSTADIAKLL-GAPVVLVVDASGMAQSAAALVLGFATFDPDVRIAGVI 150 (451)
T ss_pred cCCC-CCCHHHHHHHh-CCCEEEEECCchHHHHHHHHHHHHHHhCCCCCEEEEE
Confidence 0000 12345888888 334445554443 567777888877766666666664
No 459
>PRK05868 hypothetical protein; Validated
Probab=37.37 E-value=52 Score=30.83 Aligned_cols=30 Identities=10% Similarity=0.232 Sum_probs=26.5
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCeEEEEec
Q 020805 72 VLIEPTSGNTGIGLAFMAAAKQYRLIITMP 101 (321)
Q Consensus 72 ~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp 101 (321)
.|+...+|-.|.++|.+.++.|++++|+=.
T Consensus 3 ~V~IvGgG~aGl~~A~~L~~~G~~v~viE~ 32 (372)
T PRK05868 3 TVVVSGASVAGTAAAYWLGRHGYSVTMVER 32 (372)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCCEEEEcC
Confidence 477789999999999999999999999843
No 460
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=37.36 E-value=2.5e+02 Score=23.64 Aligned_cols=55 Identities=13% Similarity=0.137 Sum_probs=38.2
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCH--HHHHHHHHcCCEEEEeCCC
Q 020805 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSL--ERRIILRAFGAELVLTDPA 125 (321)
Q Consensus 71 ~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~--~~~~~~~~~Ga~v~~~~~~ 125 (321)
+.+|+..+|.-|.+++......|...+++....... ...+.++..+.++..+..+
T Consensus 8 ~vlItGasg~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 64 (249)
T PRK12825 8 VALVTGAARGLGRAIALRLARAGADVVVHYRSDEEAAEELVEAVEALGRRAQAVQAD 64 (249)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHHHhcCCceEEEECC
Confidence 678888899999999999889999877766554322 1223445567677666543
No 461
>PRK07063 short chain dehydrogenase; Provisional
Probab=37.34 E-value=2.7e+02 Score=24.06 Aligned_cols=71 Identities=8% Similarity=0.027 Sum_probs=40.5
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHH--cCCEEEEeCCCC-ChhHHHHHHHHHHHh
Q 020805 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRA--FGAELVLTDPAK-GMKGAVQKAEEILAK 141 (321)
Q Consensus 71 ~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~-~~~~~~~~~--~Ga~v~~~~~~~-~~~~~~~~a~~~~~~ 141 (321)
..+|+.++|--|.++|..-...|.+++++-..... ....+.++. .+.++..+..+. +.++..+...+..++
T Consensus 9 ~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 83 (260)
T PRK07063 9 VALVTGAAQGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEA 83 (260)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHH
Confidence 67888888888999998888889987666443211 111223333 466665554332 223344444444443
No 462
>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn). AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein
Probab=37.27 E-value=2.6e+02 Score=25.40 Aligned_cols=53 Identities=19% Similarity=0.172 Sum_probs=34.1
Q ss_pred EEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCC
Q 020805 73 LIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPA 125 (321)
Q Consensus 73 vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~ 125 (321)
++..++|..+.-++..+-..+-.-.|++|...-......++..|++++.++-+
T Consensus 36 ~~~~~sgt~al~~~l~~l~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~ 88 (352)
T cd00616 36 AVAVSSGTAALHLALRALGIGPGDEVIVPSFTFVATANAILLLGATPVFVDID 88 (352)
T ss_pred EEEECCHHHHHHHHHHHcCCCCCCEEEeCCcchHHHHHHHHHcCCeEEEEecC
Confidence 44456666655444443322333567788877677777888899999988743
No 463
>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=37.13 E-value=2.6e+02 Score=23.80 Aligned_cols=51 Identities=18% Similarity=0.247 Sum_probs=34.1
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHH-HHHHHcCCEEEEeC
Q 020805 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERR-IILRAFGAELVLTD 123 (321)
Q Consensus 71 ~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~-~~~~~~Ga~v~~~~ 123 (321)
..+|+.++|.-|.++|..-...|.++++...... .+. .....++.++..+.
T Consensus 7 ~ilItGas~gIG~~la~~l~~~G~~vv~~~~~~~--~~~~~~~~~~~~~~~~~~ 58 (253)
T PRK08642 7 TVLVTGGSRGLGAAIARAFAREGARVVVNYHQSE--DAAEALADELGDRAIALQ 58 (253)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCeEEEEcCCCH--HHHHHHHHHhCCceEEEE
Confidence 6788889999999999998888988776554332 222 22333455555444
No 464
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=37.05 E-value=2.7e+02 Score=23.93 Aligned_cols=69 Identities=12% Similarity=0.100 Sum_probs=40.7
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCC-ChhHHHHHHHHHHHh
Q 020805 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAK-GMKGAVQKAEEILAK 141 (321)
Q Consensus 71 ~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~-~~~~~~~~a~~~~~~ 141 (321)
..+|+.++|--|.++|......|.+++++..... ...+..+..+.++..+..+- +.++..+...++.++
T Consensus 8 ~vlItGas~~iG~~ia~~l~~~G~~v~~~~r~~~--~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 77 (257)
T PRK07067 8 VALLTGAASGIGEAVAERYLAEGARVVIADIKPA--RARLAALEIGPAAIAVSLDVTRQDSIDRIVAAAVER 77 (257)
T ss_pred EEEEeCCCchHHHHHHHHHHHcCCEEEEEcCCHH--HHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 6788888899999999998889998777644322 11222333455555544332 233344444444333
No 465
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=37.00 E-value=3.1e+02 Score=24.58 Aligned_cols=54 Identities=24% Similarity=0.271 Sum_probs=35.0
Q ss_pred HcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE
Q 020805 62 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAE 118 (321)
Q Consensus 62 ~~g~~~~g~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~ 118 (321)
+...+.+|...+|. .+|..|.+++..|+.+|++.++++.. +..+...++.+|+.
T Consensus 153 ~~~~~~~g~~vlI~-g~g~vg~~~~~la~~~G~~~v~~~~~--~~~~~~~~~~~g~~ 206 (334)
T cd08234 153 DLLGIKPGDSVLVF-GAGPIGLLLAQLLKLNGASRVTVAEP--NEEKLELAKKLGAT 206 (334)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCcEEEEECC--CHHHHHHHHHhCCe
Confidence 34455666555555 56888889888999999884443322 34556666777765
No 466
>PLN03049 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=36.93 E-value=2.7e+02 Score=27.23 Aligned_cols=49 Identities=20% Similarity=0.156 Sum_probs=29.5
Q ss_pred eEEEeeCCChHH---HHHHHHHHHcCCeEEEEecCCCC-H---HHHHHHHHcCCEE
Q 020805 71 SVLIEPTSGNTG---IGLAFMAAAKQYRLIITMPASMS-L---ERRIILRAFGAEL 119 (321)
Q Consensus 71 ~~vv~~SsGN~g---~AlA~aa~~~G~~~~ivvp~~~~-~---~~~~~~~~~Ga~v 119 (321)
+.+|.+..||.| ..+|......|+++.|+++.... . ...++++.+|..+
T Consensus 61 ~VlVlcG~GNNGGDGlv~AR~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~g~~~ 116 (462)
T PLN03049 61 RVLALCGPGNNGGDGLVAARHLHHFGYKPSICYPKRTDKPLYNGLVTQLESLSVPF 116 (462)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHCCCceEEEEECCCCCHHHHHHHHHHHHcCCce
Confidence 556667777655 44555566679999999876432 1 1234455555443
No 467
>PRK06847 hypothetical protein; Provisional
Probab=36.88 E-value=52 Score=30.49 Aligned_cols=31 Identities=10% Similarity=0.034 Sum_probs=27.2
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEec
Q 020805 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMP 101 (321)
Q Consensus 71 ~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp 101 (321)
..|+...+|-.|.++|...++.|++++|+=.
T Consensus 5 ~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~ 35 (375)
T PRK06847 5 KKVLIVGGGIGGLSAAIALRRAGIAVDLVEI 35 (375)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCEEEEec
Confidence 3478889999999999999999999988843
No 468
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=36.82 E-value=1.3e+02 Score=26.63 Aligned_cols=52 Identities=15% Similarity=-0.041 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHc-CCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecC
Q 020805 51 RIGYSMISDAEAK-GLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPA 102 (321)
Q Consensus 51 R~a~~~l~~a~~~-g~~~~g~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~ 102 (321)
+|..+.+..+.+. +.-...+.+++.-..||-|..+|..-...|.+++.+...
T Consensus 12 ~GV~~~~~~~~~~~~~~~l~g~~v~IqGfG~VG~~~a~~l~~~Ga~vv~vsD~ 64 (244)
T PF00208_consen 12 YGVAYAIEAALEHLGGDSLEGKRVAIQGFGNVGSHAARFLAELGAKVVAVSDS 64 (244)
T ss_dssp HHHHHHHHHHHHHTTCHSSTTCEEEEEESSHHHHHHHHHHHHTTEEEEEEEES
T ss_pred HHHHHHHHHHHHHcCCCCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecC
Confidence 4667777776655 432233467888888999999999999999888888643
No 469
>PRK09730 putative NAD(P)-binding oxidoreductase; Provisional
Probab=36.81 E-value=2.6e+02 Score=23.67 Aligned_cols=55 Identities=15% Similarity=0.227 Sum_probs=37.1
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC--HHHHHHHHHcCCEEEEeCCC
Q 020805 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS--LERRIILRAFGAELVLTDPA 125 (321)
Q Consensus 71 ~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~--~~~~~~~~~~Ga~v~~~~~~ 125 (321)
..+|+..+|.-|.+++......|..++++...+.. ......++.+|.++..+..+
T Consensus 3 ~~lItGa~g~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 59 (247)
T PRK09730 3 IALVTGGSRGIGRATALLLAQEGYTVAVNYQQNLHAAQEVVNLITQAGGKAFVLQAD 59 (247)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhCCCeEEEEEcc
Confidence 45788888999999999988899987765544322 12233456667777665543
No 470
>PF02887 PK_C: Pyruvate kinase, alpha/beta domain; InterPro: IPR015795 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the 3-layer alpha/beta/alpha sandwich domain. This domain has a similar topology to the archaeal hypothetical protein, MTH1675 from Methanobacterium thermoautotrophicum.; PDB: 3QTG_B 1VP8_A 1T57_C 3N25_A 1AQF_C 2G50_B 1F3X_G 1A5U_F 1A49_E 1F3W_C ....
Probab=36.74 E-value=99 Score=23.58 Aligned_cols=44 Identities=23% Similarity=0.356 Sum_probs=31.9
Q ss_pred hHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHHhcCCCcEEEEEecCCC
Q 020805 164 TGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTES 213 (321)
Q Consensus 164 ~~~Ei~~ql~~~~d~vv~p~G~Gg~~aGi~~~~k~~~~~~~vigv~~~~~ 213 (321)
.+.++.+++ +...|++..-+|.+.- .+....|.+.|+++.+...
T Consensus 7 aa~~~A~~~--~ak~Ivv~T~sG~ta~----~isk~RP~~pIiavt~~~~ 50 (117)
T PF02887_consen 7 AAVELAEDL--NAKAIVVFTESGRTAR----LISKYRPKVPIIAVTPNES 50 (117)
T ss_dssp HHHHHHHHH--TESEEEEE-SSSHHHH----HHHHT-TSSEEEEEESSHH
T ss_pred HHHHHHHhc--CCCEEEEECCCchHHH----HHHhhCCCCeEEEEcCcHH
Confidence 345777777 3789999999998864 4445569999999996654
No 471
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=36.72 E-value=3.1e+02 Score=24.51 Aligned_cols=54 Identities=28% Similarity=0.376 Sum_probs=35.7
Q ss_pred cCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 020805 63 KGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 120 (321)
Q Consensus 63 ~g~~~~g~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~ 120 (321)
.+.+.++...++. .+|..|.+++..|+.+|.+++++.+ ++.+.+.++.+|++-+
T Consensus 160 ~~~~~~~~~vli~-g~g~vG~~~~~la~~~G~~V~~~~~---s~~~~~~~~~~g~~~~ 213 (338)
T cd08254 160 AGEVKPGETVLVI-GLGGLGLNAVQIAKAMGAAVIAVDI---KEEKLELAKELGADEV 213 (338)
T ss_pred ccCCCCCCEEEEE-CCcHHHHHHHHHHHHcCCEEEEEcC---CHHHHHHHHHhCCCEE
Confidence 3445666565664 5678888989999999988544422 3456666777776443
No 472
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=36.68 E-value=3.4e+02 Score=24.95 Aligned_cols=53 Identities=25% Similarity=0.344 Sum_probs=33.7
Q ss_pred cCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE
Q 020805 63 KGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAE 118 (321)
Q Consensus 63 ~g~~~~g~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~ 118 (321)
...+.++...+|. ..|..|.+++..|+.+|.+.++++.. +..+.+.++.+|+.
T Consensus 177 ~~~~~~g~~vLI~-g~g~vG~a~i~lak~~G~~~Vi~~~~--~~~~~~~~~~~g~~ 229 (363)
T cd08279 177 TARVRPGDTVAVI-GCGGVGLNAIQGARIAGASRIIAVDP--VPEKLELARRFGAT 229 (363)
T ss_pred ccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCcEEEEcC--CHHHHHHHHHhCCe
Confidence 3445666565665 56888888888899888863333322 34455566677763
No 473
>TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families.
Probab=36.60 E-value=2e+02 Score=24.31 Aligned_cols=55 Identities=15% Similarity=0.149 Sum_probs=35.8
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCH--HHHHHHHHcCCEEEEeCCC
Q 020805 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSL--ERRIILRAFGAELVLTDPA 125 (321)
Q Consensus 71 ~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~--~~~~~~~~~Ga~v~~~~~~ 125 (321)
..+|+..+|.-|..+|......|...+++...+.+. ...+.+...+.++..+..+
T Consensus 2 ~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D 58 (242)
T TIGR01829 2 IALVTGGMGGIGTAICQRLAKDGYRVAANCGPNEERAEAWLQEQGALGFDFRVVEGD 58 (242)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhhCCceEEEEec
Confidence 457888889999999999889999877765532211 1122344456666655543
No 474
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=36.44 E-value=2.1e+02 Score=22.39 Aligned_cols=48 Identities=15% Similarity=0.213 Sum_probs=27.4
Q ss_pred HHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHH
Q 020805 83 IGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQ 133 (321)
Q Consensus 83 ~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~ 133 (321)
..+|-.....|.+.+|+- ...+.-...++..|-+|+..++ .+.+++..
T Consensus 55 ~~~a~~l~~~gvdvvi~~--~iG~~a~~~l~~~GIkv~~~~~-~~V~e~i~ 102 (121)
T COG1433 55 IRIAELLVDEGVDVVIAS--NIGPNAYNALKAAGIKVYVAPG-GTVEEAIK 102 (121)
T ss_pred HHHHHHHHHcCCCEEEEC--ccCHHHHHHHHHcCcEEEecCC-CCHHHHHH
Confidence 444555555555555542 2334446677888888887776 34444443
No 475
>PRK08339 short chain dehydrogenase; Provisional
Probab=36.36 E-value=2.3e+02 Score=24.82 Aligned_cols=31 Identities=19% Similarity=0.222 Sum_probs=25.9
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEec
Q 020805 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMP 101 (321)
Q Consensus 71 ~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp 101 (321)
..+|+.++|--|.++|......|.+++++-.
T Consensus 10 ~~lItGas~gIG~aia~~l~~~G~~V~~~~r 40 (263)
T PRK08339 10 LAFTTASSKGIGFGVARVLARAGADVILLSR 40 (263)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCEEEEEeC
Confidence 6688888889999999999999998776644
No 476
>smart00460 TGc Transglutaminase/protease-like homologues. Transglutaminases are enzymes that establish covalent links between proteins. A subset of transglutaminase homologues appear to catalyse the reverse reaction, the hydrolysis of peptide bonds. Proteins with this domain are both extracellular and intracellular, and it is likely that the eukaryotic intracellular proteins are involved in signalling events.
Probab=36.27 E-value=48 Score=22.14 Aligned_cols=26 Identities=8% Similarity=-0.058 Sum_probs=21.8
Q ss_pred eCCChHHHHHHHHHHHcCCeEEEEec
Q 020805 76 PTSGNTGIGLAFMAAAKQYRLIITMP 101 (321)
Q Consensus 76 ~SsGN~g~AlA~aa~~~G~~~~ivvp 101 (321)
......+..++..++..|||+.++.-
T Consensus 7 G~C~~~a~l~~~llr~~GIpar~v~g 32 (68)
T smart00460 7 GTCGEFAALFVALLRSLGIPARVVSG 32 (68)
T ss_pred eeeHHHHHHHHHHHHHCCCCeEEEee
Confidence 34567888999999999999999864
No 477
>PRK09126 hypothetical protein; Provisional
Probab=36.24 E-value=48 Score=31.00 Aligned_cols=29 Identities=14% Similarity=0.256 Sum_probs=26.3
Q ss_pred EEeeCCChHHHHHHHHHHHcCCeEEEEec
Q 020805 73 LIEPTSGNTGIGLAFMAAAKQYRLIITMP 101 (321)
Q Consensus 73 vv~~SsGN~g~AlA~aa~~~G~~~~ivvp 101 (321)
|+...+|-.|.++|.+.++.|++++|+=.
T Consensus 6 viIvGgG~aGl~~A~~L~~~G~~v~v~E~ 34 (392)
T PRK09126 6 IVVVGAGPAGLSFARSLAGSGLKVTLIER 34 (392)
T ss_pred EEEECcCHHHHHHHHHHHhCCCcEEEEeC
Confidence 77789999999999999999999999854
No 478
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=36.22 E-value=2.9e+02 Score=23.95 Aligned_cols=72 Identities=10% Similarity=0.059 Sum_probs=42.5
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCH--HHHHHHH-HcCCEEEEeCCCC-ChhHHHHHHHHHHHh
Q 020805 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSL--ERRIILR-AFGAELVLTDPAK-GMKGAVQKAEEILAK 141 (321)
Q Consensus 70 ~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~--~~~~~~~-~~Ga~v~~~~~~~-~~~~~~~~a~~~~~~ 141 (321)
...+|+..++.-|.++|......|.+++++...+.+. ...+.++ ..|.++..+..+- +.++..+...+..++
T Consensus 9 k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 84 (260)
T PRK08416 9 KTLVISGGTRGIGKAIVYEFAQSGVNIAFTYNSNVEEANKIAEDLEQKYGIKAKAYPLNILEPETYKELFKKIDED 84 (260)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHh
Confidence 3678888888889999999889999876664433211 1122232 3466666555432 334444555555444
No 479
>PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated
Probab=36.12 E-value=1.4e+02 Score=28.59 Aligned_cols=44 Identities=11% Similarity=0.112 Sum_probs=33.8
Q ss_pred hHHHHHHHHHHHcCCeEEEEecCCC--CHHHHHH----HHHcCCEEEEeC
Q 020805 80 NTGIGLAFMAAAKQYRLIITMPASM--SLERRII----LRAFGAELVLTD 123 (321)
Q Consensus 80 N~g~AlA~aa~~~G~~~~ivvp~~~--~~~~~~~----~~~~Ga~v~~~~ 123 (321)
|.+.+++.++.++|++++++.|+.. .+..++. .+..|+.+..+.
T Consensus 205 ~Va~Sl~~~~~~lG~~v~~~~P~~~~~~~~i~~~a~~~~~~~G~~i~~~~ 254 (395)
T PRK07200 205 SVPQGIIGLMTRFGMDVTLAHPEGYDLMPEVVEVAKKNAKASGGSFRQVN 254 (395)
T ss_pred hHHHHHHHHHHHcCCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEEEEc
Confidence 6789999999999999999999853 3443333 466788887765
No 480
>PRK14805 ornithine carbamoyltransferase; Provisional
Probab=36.11 E-value=1.3e+02 Score=27.60 Aligned_cols=45 Identities=22% Similarity=0.213 Sum_probs=29.1
Q ss_pred ChHHHHHHHHHHHcCCeEEEEecCCC-C-HHHHH----HHHHcCCEEEEeC
Q 020805 79 GNTGIGLAFMAAAKQYRLIITMPASM-S-LERRI----ILRAFGAELVLTD 123 (321)
Q Consensus 79 GN~g~AlA~aa~~~G~~~~ivvp~~~-~-~~~~~----~~~~~Ga~v~~~~ 123 (321)
.|.+.+++.+++++|++++++.|+.. + ...++ ..+..|+++..++
T Consensus 157 ~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~~~~ 207 (302)
T PRK14805 157 NNVTHSLMYGAAILGATMTVICPPGHFPDGQIVAEAQELAAKSGGKLVLTS 207 (302)
T ss_pred CccHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCEEEEEc
Confidence 46668888888888888888888753 2 22221 2355677776655
No 481
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=36.07 E-value=48 Score=31.80 Aligned_cols=32 Identities=16% Similarity=0.298 Sum_probs=24.6
Q ss_pred EEeeCCChHHHHHHHHHHHcCCeEEEEecCCC
Q 020805 73 LIEPTSGNTGIGLAFMAAAKQYRLIITMPASM 104 (321)
Q Consensus 73 vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~ 104 (321)
||...+|-.|.+.|.+|++.|.++.++=+...
T Consensus 2 VVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~ 33 (428)
T PF12831_consen 2 VVVVGGGPAGVAAAIAAARAGAKVLLIEKGGF 33 (428)
T ss_dssp EEEE--SHHHHHHHHHHHHTTS-EEEE-SSSS
T ss_pred EEEECccHHHHHHHHHHHHCCCEEEEEECCcc
Confidence 67789999999999999999999999976653
No 482
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=35.92 E-value=3.6e+02 Score=25.57 Aligned_cols=98 Identities=20% Similarity=0.232 Sum_probs=45.5
Q ss_pred CeEEEEecCCCCHHHHHHHHHcCC-EEEEe-CCCCChhHHHHHHHHHHHhCCCeEEcCCCCCCcchhhhhhchHHHHHhh
Q 020805 94 YRLIITMPASMSLERRIILRAFGA-ELVLT-DPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKG 171 (321)
Q Consensus 94 ~~~~ivvp~~~~~~~~~~~~~~Ga-~v~~~-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~Ei~~q 171 (321)
++..|+.-.+.-..-.+.+..+|. ++.++ ++........+...+..++..-.+.+...-.| +|-.....-+.|.+++
T Consensus 6 ~p~~i~fG~g~l~~l~~~~~~~g~~r~liVTd~~~~~~g~~~~v~~~L~~~~i~~~if~~v~p-~P~~~~v~~~~~~~~~ 84 (377)
T COG1454 6 LPTEILFGRGSLKELGEEVKRLGAKRALIVTDRGLAKLGLLDKVLDSLDAAGIEYEVFDEVEP-EPTIETVEAGAEVARE 84 (377)
T ss_pred cCceEEecCChHHHHHHHHHhcCCCceEEEECCccccchhHHHHHHHHHhcCCeEEEecCCCC-CCCHHHHHHHHHHHHh
Confidence 344555555555555556666663 33333 32211112223333333333212322221112 2233445566777777
Q ss_pred hCCCCCEEEEecCCchhHHHHHHHH
Q 020805 172 SGGRIDALVSGIGTGGTITGAGKFL 196 (321)
Q Consensus 172 l~~~~d~vv~p~G~Gg~~aGi~~~~ 196 (321)
. ++| .|+++|+|+.+ -++++.
T Consensus 85 ~--~~D-~iIalGGGS~~-D~AK~i 105 (377)
T COG1454 85 F--GPD-TIIALGGGSVI-DAAKAI 105 (377)
T ss_pred c--CCC-EEEEeCCccHH-HHHHHH
Confidence 5 588 56788887765 334433
No 483
>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
Probab=35.85 E-value=2.6e+02 Score=23.88 Aligned_cols=34 Identities=15% Similarity=0.116 Sum_probs=27.9
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCC
Q 020805 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPAS 103 (321)
Q Consensus 70 ~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~ 103 (321)
...+|+..+|.-|.++|......|.+++++....
T Consensus 9 k~vlItGas~~iG~~la~~l~~~G~~v~~~~~~~ 42 (252)
T PRK08220 9 KTVWVTGAAQGIGYAVALAFVEAGAKVIGFDQAF 42 (252)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEecch
Confidence 3678888889999999999888999988886543
No 484
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=35.63 E-value=1.2e+02 Score=28.11 Aligned_cols=52 Identities=19% Similarity=0.238 Sum_probs=33.4
Q ss_pred EEEeeCCC--hHHHHHHHHHHHcCCeEEEEecCCC--CHHHHH----HHHHcCCEEEEeC
Q 020805 72 VLIEPTSG--NTGIGLAFMAAAKQYRLIITMPASM--SLERRI----ILRAFGAELVLTD 123 (321)
Q Consensus 72 ~vv~~SsG--N~g~AlA~aa~~~G~~~~ivvp~~~--~~~~~~----~~~~~Ga~v~~~~ 123 (321)
+|.-...+ |.+.|++.+++++|++++++.|+.. +...++ ..+..|+++....
T Consensus 158 ~ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g~~~~~~~ 217 (334)
T PRK01713 158 SYVYIGDARNNMGNSLLLIGAKLGMDVRICAPKALLPEASLVEMCEKFAKESGARITVTD 217 (334)
T ss_pred EEEEECCCccCHHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEc
Confidence 34444443 6788888888888999888888753 222222 2344688877665
No 485
>PRK07856 short chain dehydrogenase; Provisional
Probab=35.43 E-value=2.3e+02 Score=24.32 Aligned_cols=33 Identities=18% Similarity=0.191 Sum_probs=26.8
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecC
Q 020805 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPA 102 (321)
Q Consensus 70 ~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~ 102 (321)
...+|+..+|--|.++|......|.+++++...
T Consensus 7 k~~lItGas~gIG~~la~~l~~~g~~v~~~~r~ 39 (252)
T PRK07856 7 RVVLVTGGTRGIGAGIARAFLAAGATVVVCGRR 39 (252)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 367888888999999999988889987777543
No 486
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=35.40 E-value=1.5e+02 Score=28.79 Aligned_cols=51 Identities=20% Similarity=0.140 Sum_probs=37.0
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCC--CHHHHHHHHHcCCEEEE
Q 020805 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM--SLERRIILRAFGAELVL 121 (321)
Q Consensus 71 ~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~--~~~~~~~~~~~Ga~v~~ 121 (321)
+.++....|..|+++|.+.+..|.+++++=.... .....+.++..|.+++.
T Consensus 17 ~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~ 69 (480)
T PRK01438 17 LRVVVAGLGVSGFAAADALLELGARVTVVDDGDDERHRALAAILEALGATVRL 69 (480)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcCCEEEE
Confidence 4567778899999999999999999877643332 12334567888988754
No 487
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=35.34 E-value=1.2e+02 Score=27.60 Aligned_cols=73 Identities=12% Similarity=0.031 Sum_probs=41.9
Q ss_pred CCCC-ceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecC
Q 020805 29 NGCV-ARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPA 102 (321)
Q Consensus 29 ~~~g-~~v~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~ 102 (321)
+..| ++-.++.++-.-.|-+.|=..+.........+...+| +.++...+|-.++|++++....|.+-+.|+..
T Consensus 85 ~~iGAVNTl~~~~~g~l~G~NTD~~G~~~~L~~~~~~~~~~~-~~vlilGAGGAarAv~~aL~~~g~~~i~V~NR 158 (283)
T COG0169 85 RLIGAVNTLVREDDGKLRGYNTDGIGFLRALKEFGLPVDVTG-KRVLILGAGGAARAVAFALAEAGAKRITVVNR 158 (283)
T ss_pred HHhCCceEEEEccCCEEEEEcCCHHHHHHHHHhcCCCcccCC-CEEEEECCcHHHHHHHHHHHHcCCCEEEEEeC
Confidence 4455 4555455445566777775444332222111122223 45777788889999999999999754444443
No 488
>PRK05693 short chain dehydrogenase; Provisional
Probab=35.31 E-value=3e+02 Score=23.97 Aligned_cols=66 Identities=30% Similarity=0.183 Sum_probs=42.8
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHH
Q 020805 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILA 140 (321)
Q Consensus 71 ~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~ 140 (321)
..+|+..+|--|.++|......|.+++++... ..+.+.+...+.+.+.++-. +.++..+...+..+
T Consensus 3 ~vlItGasggiG~~la~~l~~~G~~V~~~~r~---~~~~~~~~~~~~~~~~~Dl~-~~~~~~~~~~~~~~ 68 (274)
T PRK05693 3 VVLITGCSSGIGRALADAFKAAGYEVWATARK---AEDVEALAAAGFTAVQLDVN-DGAALARLAEELEA 68 (274)
T ss_pred EEEEecCCChHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHHCCCeEEEeeCC-CHHHHHHHHHHHHH
Confidence 45788888899999999988899987776543 34455566667776666643 23333444444433
No 489
>PRK07023 short chain dehydrogenase; Provisional
Probab=35.29 E-value=2.2e+02 Score=24.27 Aligned_cols=50 Identities=14% Similarity=0.086 Sum_probs=35.2
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCC
Q 020805 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 124 (321)
Q Consensus 71 ~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~ 124 (321)
..+|+..+|.-|.++|......|.+++++.....+. .....|.++..+..
T Consensus 3 ~vlItGasggiG~~ia~~l~~~G~~v~~~~r~~~~~----~~~~~~~~~~~~~~ 52 (243)
T PRK07023 3 RAIVTGHSRGLGAALAEQLLQPGIAVLGVARSRHPS----LAAAAGERLAEVEL 52 (243)
T ss_pred eEEEecCCcchHHHHHHHHHhCCCEEEEEecCcchh----hhhccCCeEEEEEe
Confidence 458888999999999999888899987775443221 13445767765554
No 490
>PRK07366 succinyldiaminopimelate transaminase; Validated
Probab=35.24 E-value=3.7e+02 Score=24.98 Aligned_cols=110 Identities=9% Similarity=0.002 Sum_probs=51.6
Q ss_pred CCCchhhHHHHHHHHHHHHcCC-CCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEe
Q 020805 44 PCSSVKDRIGYSMISDAEAKGL-ITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLT 122 (321)
Q Consensus 44 ptGS~K~R~a~~~l~~a~~~g~-~~~g~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~ 122 (321)
+.|....|-+..-... ...|. +.+. ..|+..+++..+..++..+- ..-.=.|+++.-+-..-...++.+|++++.+
T Consensus 67 ~~G~~~lr~aia~~~~-~~~g~~~~~~-~~I~it~Gs~~al~~~~~~l-~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v 143 (388)
T PRK07366 67 FHGTLDFREAAAQWYE-QRFGLAVDPE-TEVLPLIGSQEGTAHLPLAV-LNPGDFALLLDPGYPSHAGGVYLAGGQIYPM 143 (388)
T ss_pred CCCCHHHHHHHHHHHH-HhhCCcCCCc-CeEEECCCcHHHHHHHHHHh-CCCCCEEEEcCCCCcchHHHHHhcCCEEEEE
Confidence 4566666654332211 12242 3332 13666666777666554432 1211234444433233356678899999988
Q ss_pred CCCC--ChhHHHHHHHHHHHhCCCeEEcCCCCCCcc
Q 020805 123 DPAK--GMKGAVQKAEEILAKTPNAYMLQQFENPAN 156 (321)
Q Consensus 123 ~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 156 (321)
+-+. .+....+...+........++++...||..
T Consensus 144 ~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~p~NPTG 179 (388)
T PRK07366 144 PLRAENDFLPVFADIPTEVLAQARLMVLSYPHNPTT 179 (388)
T ss_pred ECCCccCCCCCHHHHHHhhcccceEEEEeCCCCCCC
Confidence 6431 121111112222222235677765556543
No 491
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=35.22 E-value=3.6e+02 Score=24.85 Aligned_cols=33 Identities=24% Similarity=0.217 Sum_probs=28.1
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCC
Q 020805 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPAS 103 (321)
Q Consensus 71 ~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~ 103 (321)
++|..-.+|..|.+.|..+...|++++++=+..
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~ 40 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAP 40 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 346667889999999999999999999996653
No 492
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=35.10 E-value=3e+02 Score=23.79 Aligned_cols=108 Identities=14% Similarity=0.111 Sum_probs=55.5
Q ss_pred HHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCH---HHHHHHHHcCC-EEEEeCCCCChhHH
Q 020805 56 MISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSL---ERRIILRAFGA-ELVLTDPAKGMKGA 131 (321)
Q Consensus 56 ~l~~a~~~g~~~~g~~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~---~~~~~~~~~Ga-~v~~~~~~~~~~~~ 131 (321)
++....+.=.+++| ..|.+-.+| .|...|..|+..| .|+.=+..+. .-.+.++.+|- +|.+..++..
T Consensus 60 ~vA~m~~~L~~~~g-~~VLEIGtG-sGY~aAvla~l~~---~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~---- 130 (209)
T COG2518 60 MVARMLQLLELKPG-DRVLEIGTG-SGYQAAVLARLVG---RVVSIERIEELAEQARRNLETLGYENVTVRHGDGS---- 130 (209)
T ss_pred HHHHHHHHhCCCCC-CeEEEECCC-chHHHHHHHHHhC---eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcc----
Confidence 33333333335566 457777666 3567788888888 4444443322 12334777887 5655554321
Q ss_pred HHHHHHHHHhCCCeEEcCCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCC
Q 020805 132 VQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGT 185 (321)
Q Consensus 132 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~Ei~~ql~~~~d~vv~p~G~ 185 (321)
.||---.|||--.. .++-.++=.-+++||. .--.+|+|+|+
T Consensus 131 -----------~G~~~~aPyD~I~V-taaa~~vP~~Ll~QL~-~gGrlv~PvG~ 171 (209)
T COG2518 131 -----------KGWPEEAPYDRIIV-TAAAPEVPEALLDQLK-PGGRLVIPVGS 171 (209)
T ss_pred -----------cCCCCCCCcCEEEE-eeccCCCCHHHHHhcc-cCCEEEEEEcc
Confidence 12222233332111 1233344445688984 23568888884
No 493
>PLN02494 adenosylhomocysteinase
Probab=35.08 E-value=1.1e+02 Score=29.88 Aligned_cols=90 Identities=17% Similarity=0.215 Sum_probs=55.4
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEcCC
Q 020805 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQ 150 (321)
Q Consensus 71 ~~vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 150 (321)
++++....|+-|+++|..++.+|.+++++ . ..+.+.......|.++. + .++ ..+.. +.++...
T Consensus 255 KtVvViGyG~IGr~vA~~aka~Ga~VIV~-e--~dp~r~~eA~~~G~~vv--~----leE-------al~~A-DVVI~tT 317 (477)
T PLN02494 255 KVAVICGYGDVGKGCAAAMKAAGARVIVT-E--IDPICALQALMEGYQVL--T----LED-------VVSEA-DIFVTTT 317 (477)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEE-e--CCchhhHHHHhcCCeec--c----HHH-------HHhhC-CEEEECC
Confidence 67888999999999999999999985554 2 22333334455677753 1 122 22222 4444311
Q ss_pred CCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCch
Q 020805 151 FENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGG 187 (321)
Q Consensus 151 ~~~~~~~~~g~~~~~~Ei~~ql~~~~d~vv~p~G~Gg 187 (321)
.+ ...+..+.++++ ++..+++-+|..+
T Consensus 318 -Gt-------~~vI~~e~L~~M--K~GAiLiNvGr~~ 344 (477)
T PLN02494 318 -GN-------KDIIMVDHMRKM--KNNAIVCNIGHFD 344 (477)
T ss_pred -CC-------ccchHHHHHhcC--CCCCEEEEcCCCC
Confidence 11 123446777777 4688898888854
No 494
>PRK06753 hypothetical protein; Provisional
Probab=35.05 E-value=58 Score=30.20 Aligned_cols=30 Identities=10% Similarity=0.051 Sum_probs=26.4
Q ss_pred EEeeCCChHHHHHHHHHHHcCCeEEEEecC
Q 020805 73 LIEPTSGNTGIGLAFMAAAKQYRLIITMPA 102 (321)
Q Consensus 73 vv~~SsGN~g~AlA~aa~~~G~~~~ivvp~ 102 (321)
|+...+|-.|.++|.+.++.|++++|+=..
T Consensus 3 V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~ 32 (373)
T PRK06753 3 IAIIGAGIGGLTAAALLQEQGHEVKVFEKN 32 (373)
T ss_pred EEEECCCHHHHHHHHHHHhCCCcEEEEecC
Confidence 677899999999999999999999888533
No 495
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=35.01 E-value=2.8e+02 Score=24.07 Aligned_cols=51 Identities=25% Similarity=0.235 Sum_probs=34.4
Q ss_pred HcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCe-EEEEecCCCCHHHHHHHHHcC
Q 020805 62 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYR-LIITMPASMSLERRIILRAFG 116 (321)
Q Consensus 62 ~~g~~~~g~~~vv~~SsGN~g~AlA~aa~~~G~~-~~ivvp~~~~~~~~~~~~~~G 116 (321)
+.+.+.+|...+|. ..|..|.++...|+.+|.+ ++++ ..+..+.+.++.+|
T Consensus 91 ~~~~~~~g~~vlI~-g~g~vg~~~i~~a~~~g~~~vi~~---~~~~~~~~~~~~~g 142 (277)
T cd08255 91 RDAEPRLGERVAVV-GLGLVGLLAAQLAKAAGAREVVGV---DPDAARRELAEALG 142 (277)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCcEEEE---CCCHHHHHHHHHcC
Confidence 34556666565555 5688888988899999988 4443 23445666777777
No 496
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=34.86 E-value=1.7e+02 Score=27.04 Aligned_cols=53 Identities=15% Similarity=0.046 Sum_probs=38.9
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCe-EEEEecCC-----CCHHHHHHHHHcCCEEEEeC
Q 020805 71 SVLIEPTSGNTGIGLAFMAAAKQYR-LIITMPAS-----MSLERRIILRAFGAELVLTD 123 (321)
Q Consensus 71 ~~vv~~SsGN~g~AlA~aa~~~G~~-~~ivvp~~-----~~~~~~~~~~~~Ga~v~~~~ 123 (321)
+.++...+|+.|.-+|......|.+ ++++.+.. .....++.++..|.+++.-.
T Consensus 173 ~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~~~~~~~~~~~~~~l~~~gi~i~~~~ 231 (352)
T PRK12770 173 KKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRTINEAPAGKYEIERLIARGVEFLELV 231 (352)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecchhhCCCCHHHHHHHHHcCCEEeecc
Confidence 4688889999999999887888997 88886542 12344566788888876543
No 497
>TIGR03801 asp_4_decarbox aspartate 4-decarboxylase. This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1).
Probab=34.84 E-value=4.7e+02 Score=26.01 Aligned_cols=82 Identities=12% Similarity=0.038 Sum_probs=41.3
Q ss_pred CCCCchhhHHHHHHHHHHHHc-CCCCCCC-eEEEeeCCChHHHHHHHHHH----Hc--CCeEEEEecCCCCHHHHHHHHH
Q 020805 43 EPCSSVKDRIGYSMISDAEAK-GLITPGE-SVLIEPTSGNTGIGLAFMAA----AK--QYRLIITMPASMSLERRIILRA 114 (321)
Q Consensus 43 ~ptGS~K~R~a~~~l~~a~~~-g~~~~g~-~~vv~~SsGN~g~AlA~aa~----~~--G~~~~ivvp~~~~~~~~~~~~~ 114 (321)
.|.|....|-+...-....+. +...+.. ..|+..+++..|..++..+- .+ |=++.+..|.-.+-...-.+..
T Consensus 126 ~p~g~~~~~e~iv~~y~~~~~~~~~~~~~~~~V~it~Gat~al~~~~~~l~~~~ll~pGD~Vlv~~P~y~~y~~~~~l~~ 205 (521)
T TIGR03801 126 VPDRMLPHSEKIVHQYLIQEMCGNKPPPGEFDLFAVEGGTAAMCYIFDSLKANELLKKGDKIALMTPIFTPYLEIPELPR 205 (521)
T ss_pred CCCCCHHHHHHHHHHHHHhhccCCCCCCCcCeEEEeCCHHHHHHHHHHHHhHhhcCCCCCEEEEeCCCcHHHHHHHHHhc
Confidence 467777766543321111221 2222221 15887888888887776541 22 3333333344333333333455
Q ss_pred cCCEEEEeCC
Q 020805 115 FGAELVLTDP 124 (321)
Q Consensus 115 ~Ga~v~~~~~ 124 (321)
+|.+++.++.
T Consensus 206 ~g~~vv~i~~ 215 (521)
T TIGR03801 206 YDFEVVRIKA 215 (521)
T ss_pred CCcEEEEeec
Confidence 6888887764
No 498
>PRK12831 putative oxidoreductase; Provisional
Probab=34.78 E-value=1.1e+02 Score=29.82 Aligned_cols=30 Identities=23% Similarity=0.115 Sum_probs=27.0
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEe
Q 020805 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITM 100 (321)
Q Consensus 71 ~~vv~~SsGN~g~AlA~aa~~~G~~~~ivv 100 (321)
..|+.-.+|-.|.+.|+..++.|++++||=
T Consensus 141 ~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e 170 (464)
T PRK12831 141 KKVAVIGSGPAGLTCAGDLAKMGYDVTIFE 170 (464)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEe
Confidence 468888999999999999999999998884
No 499
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=34.60 E-value=97 Score=30.38 Aligned_cols=53 Identities=17% Similarity=0.219 Sum_probs=36.0
Q ss_pred CCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHH
Q 020805 77 TSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEI 138 (321)
Q Consensus 77 SsGN~g~AlA~aa~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~ 138 (321)
|||-+|.++|.++...|.+++++.-..... .-.|.+++.+.. .++..+...+.
T Consensus 280 SSGkmG~alA~aa~~~GA~VtlI~Gp~~~~------~p~~v~~i~V~t---a~eM~~av~~~ 332 (475)
T PRK13982 280 SSGKQGFAIAAAAAAAGAEVTLISGPVDLA------DPQGVKVIHVES---ARQMLAAVEAA 332 (475)
T ss_pred CchHHHHHHHHHHHHCCCcEEEEeCCcCCC------CCCCceEEEecC---HHHHHHHHHhh
Confidence 789999999999999999999997332110 125667777764 23444444443
No 500
>PRK06108 aspartate aminotransferase; Provisional
Probab=34.59 E-value=3.7e+02 Score=24.77 Aligned_cols=76 Identities=14% Similarity=0.058 Sum_probs=42.0
Q ss_pred CCCchhhHHHHHHHHHHHHcC-CCCCCCeEEEeeCCChHHHHHHHHHHH-cCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q 020805 44 PCSSVKDRIGYSMISDAEAKG-LITPGESVLIEPTSGNTGIGLAFMAAA-KQYRLIITMPASMSLERRIILRAFGAELVL 121 (321)
Q Consensus 44 ptGS~K~R~a~~~l~~a~~~g-~~~~g~~~vv~~SsGN~g~AlA~aa~~-~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~ 121 (321)
+.|.-..|-+....... ..| .+.+ ..++..+++..+..++..+-. .|= .|+++.-.-..-...++.+|++++.
T Consensus 60 ~~G~~~lr~~la~~~~~-~~~~~~~~--~~i~~t~g~~~al~~~~~~l~~~gd--~vl~~~p~y~~~~~~~~~~g~~~~~ 134 (382)
T PRK06108 60 NLGIPELREALARYVSR-LHGVATPP--ERIAVTSSGVQALMLAAQALVGPGD--EVVAVTPLWPNLVAAPKILGARVVC 134 (382)
T ss_pred CCCCHHHHHHHHHHHHH-HhCCCcCc--ceEEEeCChHHHHHHHHHHhcCCCC--EEEEeCCCccchHHHHHHCCCEEEE
Confidence 45666666554332221 123 2333 346767778887776665432 232 3444443323334567889999998
Q ss_pred eCC
Q 020805 122 TDP 124 (321)
Q Consensus 122 ~~~ 124 (321)
++.
T Consensus 135 v~~ 137 (382)
T PRK06108 135 VPL 137 (382)
T ss_pred eeC
Confidence 875
Done!