RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 020805
(321 letters)
>1z7w_A Cysteine synthase; transferase; HET: PLP; 2.20A {Arabidopsis
thaliana} SCOP: c.79.1.1 PDB: 1z7y_A* 2isq_A*
Length = 322
Score = 580 bits (1497), Expect = 0.0
Identities = 242/291 (83%), Positives = 265/291 (91%)
Query: 6 SNIAKDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGL 65
S IAKDVTELIGNTPLVYLNN+ GCV R+AAKLEMMEPCSSVKDRIG+SMISDAE KGL
Sbjct: 3 SRIAKDVTELIGNTPLVYLNNVAEGCVGRVAAKLEMMEPCSSVKDRIGFSMISDAEKKGL 62
Query: 66 ITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPA 125
I PGESVLIEPTSGNTG+GLAF AAAK Y+LIITMPASMS ERRIIL AFG ELVLTDPA
Sbjct: 63 IKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPA 122
Query: 126 KGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGT 185
KGMKGA+ KAEEILAKTPN YMLQQFENPANPKIHYETTGPE+WKG+GG+ID VSGIGT
Sbjct: 123 KGMKGAIAKAEEILAKTPNGYMLQQFENPANPKIHYETTGPEIWKGTGGKIDGFVSGIGT 182
Query: 186 GGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGIGAGFVPGVLEVNIIDE 245
GGTITGAGK+LKE+N N+KLYG+EP ES +LSGGKPGPHKIQGIGAGF+P VL V++IDE
Sbjct: 183 GGTITGAGKYLKEQNANVKLYGVEPVESAILSGGKPGPHKIQGIGAGFIPSVLNVDLIDE 242
Query: 246 VVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVV 296
VVQVSSDE+I+ A+ LALKEGL VGISSG AAAAAI++A+RPENAGKL V
Sbjct: 243 VVQVSSDESIDMARQLALKEGLLVGISSGAAAAAAIKLAQRPENAGKLFVA 293
>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP
dependent enzyme, serine ACET transferase; HET: LLP;
1.68A {Leishmania donovani} PDB: 3t4p_A* 3spx_A* 4air_A*
Length = 334
Score = 577 bits (1489), Expect = 0.0
Identities = 150/293 (51%), Positives = 209/293 (71%), Gaps = 1/293 (0%)
Query: 4 ESSNIAKDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAK 63
+S N+A+ + +LIG TP +YLN + N A++ K+E P +SVKDR+G+++ AE +
Sbjct: 7 KSKNVAQSIDQLIGQTPALYLNKL-NNTKAKVVLKMECENPMASVKDRLGFAIYDKAEKE 65
Query: 64 GLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTD 123
G + PG+S+++E +SGNTG+ LA + A + Y++IITMP SMSLERR +LR FGAE++LT
Sbjct: 66 GKLIPGKSIVVESSSGNTGVSLAHLGAIRGYKVIITMPESMSLERRCLLRIFGAEVILTP 125
Query: 124 PAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGI 183
A GMKGAV A++I+A PNA + QF N IH ETTGPE+W+ + +D ++G+
Sbjct: 126 AALGMKGAVAMAKKIVAANPNAVLADQFATKYNALIHEETTGPEIWEQTNHNVDCFIAGV 185
Query: 184 GTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGIGAGFVPGVLEVNII 243
GTGGT+TG + LK+ + ++ +EPTESPVLSGGKPGPHKIQGIG GFVP VL+ ++I
Sbjct: 186 GTGGTLTGVARALKKMGSHARIVAVEPTESPVLSGGKPGPHKIQGIGPGFVPDVLDRSLI 245
Query: 244 DEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVV 296
DEV+ V+ D+AIETA L +G+F G S G AA++IA+RPE GK IV
Sbjct: 246 DEVLCVAGDDAIETALKLTRSDGVFCGFSGGANVYAALKIAERPEMEGKTIVT 298
>4aec_A Cysteine synthase, mitochondrial; lyase, cysteine synthesis,
assimilatory sulfate reduction, S plant inorganic sulfur
uptake; HET: PLP; 2.40A {Arabidopsis thaliana}
Length = 430
Score = 579 bits (1495), Expect = 0.0
Identities = 219/295 (74%), Positives = 260/295 (88%)
Query: 2 AVESSNIAKDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAE 61
+ NIA +V++LIG TP+VYLN+I GCVA IAAKLE+MEPC SVKDRIGYSM++DAE
Sbjct: 107 GPDGLNIADNVSQLIGKTPMVYLNSIAKGCVANIAAKLEIMEPCCSVKDRIGYSMVTDAE 166
Query: 62 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 121
KG I+PG+SVL+EPTSGNTGIGLAF+AA++ YRLI+TMPASMS+ERR++L+AFGAELVL
Sbjct: 167 QKGFISPGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERRVLLKAFGAELVL 226
Query: 122 TDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVS 181
TDPAKGM GAVQKAEEIL TP+AYMLQQF+NPANPKIHYETTGPE+W + G++D V+
Sbjct: 227 TDPAKGMTGAVQKAEEILKNTPDAYMLQQFDNPANPKIHYETTGPEIWDDTKGKVDIFVA 286
Query: 182 GIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGIGAGFVPGVLEVN 241
GIGTGGTITG G+F+KEKNP ++ G+EPTES +LSGGKPGPHKIQGIGAGF+P L+
Sbjct: 287 GIGTGGTITGVGRFIKEKNPKTQVIGVEPTESDILSGGKPGPHKIQGIGAGFIPKNLDQK 346
Query: 242 IIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVV 296
I+DEV+ +SS+EAIETAK LALKEGL VGISSG AAAAAI++AKRPENAGKLI V
Sbjct: 347 IMDEVIAISSEEAIETAKQLALKEGLMVGISSGAAAAAAIKVAKRPENAGKLIAV 401
>2q3b_A Cysteine synthase A; pyridoxal-5'-phosphate, sulphur metabolism,
cysteine biosynthesis, transferase; HET: LLP; 1.80A
{Mycobacterium tuberculosis} PDB: 2q3c_A* 2q3d_A* 3rr2_A
Length = 313
Score = 572 bits (1478), Expect = 0.0
Identities = 162/290 (55%), Positives = 219/290 (75%), Gaps = 1/290 (0%)
Query: 7 NIAKDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLI 66
+IA+D+T+LIG TPLV L + +G VA I AKLE P +SVKDRIG +M+ AE GLI
Sbjct: 5 SIAEDITQLIGRTPLVRLRRVTDGAVADIVAKLEFFNPANSVKDRIGVAMLQAAEQAGLI 64
Query: 67 TPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAK 126
P ++++EPTSGNTGI LA + AA+ YR ++TMP +MSLERR++LRA+GAEL+LT A
Sbjct: 65 KPD-TIILEPTSGNTGIALAMVCAARGYRCVLTMPETMSLERRMLLRAYGAELILTPGAD 123
Query: 127 GMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTG 186
GM GA+ KAEE+ ++ QQFENPANP IH TT E+W+ + G++D +V+G+GTG
Sbjct: 124 GMSGAIAKAEELAKTDQRYFVPQQFENPANPAIHRVTTAEEVWRDTDGKVDIVVAGVGTG 183
Query: 187 GTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGIGAGFVPGVLEVNIIDEV 246
GTITG + +KE+ P+ + +EP SPVLSGG+ GPH IQGIGAGFVP VL+ +++DE+
Sbjct: 184 GTITGVAQVIKERKPSARFVAVEPAASPVLSGGQKGPHPIQGIGAGFVPPVLDQDLVDEI 243
Query: 247 VQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVV 296
+ V +++A+ A+ LA +EGL VGISSG A AA+++A+RPENAGKLIVV
Sbjct: 244 ITVGNEDALNVARRLAREEGLLVGISSGAATVAALQVARRPENAGKLIVV 293
>1ve1_A O-acetylserine sulfhydrylase; PLP, transferase, riken structural
genomics/proteomics initi RSGI, structural genomics;
HET: PLP; 1.45A {Thermus thermophilus} SCOP: c.79.1.1
PDB: 2eco_A* 2ecq_A* 2efy_A*
Length = 304
Score = 547 bits (1413), Expect = 0.0
Identities = 147/286 (51%), Positives = 200/286 (69%), Gaps = 3/286 (1%)
Query: 12 VTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPG-E 70
V IG TP+V L +V +A + KLE + P S+KDR + MI DAE +G++ PG
Sbjct: 3 VEGAIGKTPVVRLAKVVEPDMAEVWVKLEGLNPGGSIKDRPAWYMIKDAEERGILRPGSG 62
Query: 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKG 130
V++EPTSGNTGIGLA +AA++ YRLI+TMPA MS ER+ +L+AFGAELVLTDP + M
Sbjct: 63 QVIVEPTSGNTGIGLAMIAASRGYRLILTMPAQMSEERKRVLKAFGAELVLTDPERRMLA 122
Query: 131 AVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTIT 190
A ++A L + A+M QF+NPAN + HYETTGPEL++ GRIDA V G GTGGTIT
Sbjct: 123 AREEALR-LKEELGAFMPDQFKNPANVRAHYETTGPELYEALEGRIDAFVYGSGTGGTIT 181
Query: 191 GAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGIGAGFVPGVLEVNIIDEVVQVS 250
G G++LKE+ P++K+ +EP S VLSGGK G H QG+G GF+P L+++++D V+QV
Sbjct: 182 GVGRYLKERIPHVKVIAVEPARSNVLSGGKMGQHGFQGMGPGFIPENLDLSLLDGVIQVW 241
Query: 251 SDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVV 296
++A A+ LA +EGLF+G+SSGG AA+++A R GK +
Sbjct: 242 EEDAFPLARRLAREEGLFLGMSSGGIVWAALQVA-RELGPGKRVAC 286
>1y7l_A O-acetylserine sulfhydrylase, O-acetylserine (thiol)-lyase; X-RAY
crystallography, sulfhydrylase; HET: LLP; 1.55A
{Haemophilus influenzae} SCOP: c.79.1.1 PDB: 3iqg_X*
3iqh_X* 3iqi_X* 1fcj_A* 1oas_A* 1d6s_A*
Length = 316
Score = 547 bits (1412), Expect = 0.0
Identities = 156/298 (52%), Positives = 203/298 (68%), Gaps = 11/298 (3%)
Query: 7 NIAKDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLI 66
I D + IGNTPLV L + G + K+E P SVK RIG +M+ AE G +
Sbjct: 2 AIYADNSYSIGNTPLVRLKHF--GHNGNVVVKIEGRNPSYSVKCRIGANMVWQAEKDGTL 59
Query: 67 TPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAK 126
T G +++ TSGNTGI LA++AAA+ Y++ +TMP +MSLER+ +L G LVLT+ AK
Sbjct: 60 TKG-KEIVDATSGNTGIALAYVAAARGYKITLTMPETMSLERKRLLCGLGVNLVLTEGAK 118
Query: 127 GMKGAVQKAEEILAKTPNAY-MLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGT 185
GMKGA+ KAEEI+A P+ Y ML+QFENPANP+IH ETTGPE+WK + G++D +V+G+GT
Sbjct: 119 GMKGAIAKAEEIVASDPSRYVMLKQFENPANPQIHRETTGPEIWKDTDGKVDVVVAGVGT 178
Query: 186 GGTITGAGKFLK-EKNPNIKLYGIEPTESPVLSGG------KPGPHKIQGIGAGFVPGVL 238
GG+ITG + +K + I +EP ESPV+S KPGPHKIQGIGAGF+P L
Sbjct: 179 GGSITGISRAIKLDFGKQITSVAVEPVESPVISQTLAGEEVKPGPHKIQGIGAGFIPKNL 238
Query: 239 EVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVV 296
+++IID V V SD A+ TA+ L +EG+ GISSG A AAA +AK PE A KLIVV
Sbjct: 239 DLSIIDRVETVDSDTALATARRLMAEEGILAGISSGAAVAAADRLAKLPEFADKLIVV 296
>2pqm_A Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.86A {Entamoeba
histolytica} PDB: 3bm5_A*
Length = 343
Score = 547 bits (1411), Expect = 0.0
Identities = 124/301 (41%), Positives = 186/301 (61%), Gaps = 7/301 (2%)
Query: 1 MAVESSNIAKDVTELIGNTPLVYLNNIVNGCV----ARIAAKLEMMEPCSSVKDRIGYSM 56
++ I ++ E IG TPLV L+ + RI KLE P SSVKDR+G+++
Sbjct: 6 ISSPRKRIYHNILETIGGTPLVELHGVTEHPRIKKGTRILVKLEYFNPMSSVKDRVGFNI 65
Query: 57 ISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFG 116
+ A G + PG +IE TSGNTGI L A YR+ I MP++MS+ER++I++AFG
Sbjct: 66 VYQAIKDGRLKPG-MEIIESTSGNTGIALCQAGAVFGYRVNIAMPSTMSVERQMIMKAFG 124
Query: 117 AELVLTDPAKGMKGAVQKAEEILAKTPNAY-MLQQFENPANPKIHYETTGPELWKGSGGR 175
AEL+LT+ KGM GA+++ +++ + P Y + QF NP N H+ T E+W+ + G
Sbjct: 125 AELILTEGKKGMPGAIEEVNKMIKENPGKYFVANQFGNPDNTAAHH-YTANEIWEDTDGE 183
Query: 176 IDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGIGAGFVP 235
+D +VS +GT GT+ G + LKEK IK+ +EP ES VL G GPH IQGIGAGF+P
Sbjct: 184 VDIVVSAVGTSGTVIGVAEKLKEKKKGIKIIAVEPEESAVLEGKAKGPHGIQGIGAGFIP 243
Query: 236 GVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIV 295
+ + +DE++ + + +A + A+ + +G+ G+SSG A A ++ A++PEN GK IV
Sbjct: 244 DIYKKEFVDEIIPIKTQDAWKMARAVVKYDGIMCGMSSGAAILAGLKEAEKPENEGKTIV 303
Query: 296 V 296
+
Sbjct: 304 I 304
>2egu_A Cysteine synthase; O-acetylserine sulfhydrase, structural genomics,
NPPSFA, NAT project on protein structural and functional
analyses; 1.90A {Geobacillus kaustophilus}
Length = 308
Score = 540 bits (1394), Expect = 0.0
Identities = 162/291 (55%), Positives = 210/291 (72%), Gaps = 3/291 (1%)
Query: 6 SNIAKDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGL 65
+ +TELIG+TP V LN IV+ A + KLE M P SSVKDRI +MI AE G
Sbjct: 2 ARTVNSITELIGDTPAVKLNRIVDEDSADVYLKLEFMNPGSSVKDRIALAMIEAAEKAGK 61
Query: 66 ITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPA 125
+ PG ++EPTSGNTGIGLA +AAAK Y+ ++ MP +MSLERR +LRA+GAELVLT A
Sbjct: 62 LKPG-DTIVEPTSGNTGIGLAMVAAAKGYKAVLVMPDTMSLERRNLLRAYGAELVLTPGA 120
Query: 126 KGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGT 185
+GM+GA+ KAEE L + +M QQF+N ANP+IH TTG E+ + G ++DA V+G+GT
Sbjct: 121 QGMRGAIAKAEE-LVREHGYFMPQQFKNEANPEIHRLTTGKEIVEQMGDQLDAFVAGVGT 179
Query: 186 GGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGIGAGFVPGVLEVNIIDE 245
GGTITGAGK L+E PNIK+Y +EP +SPVLSGGKPGPHKIQGIGAGFVP +L+ +I D
Sbjct: 180 GGTITGAGKVLREAYPNIKIYAVEPADSPVLSGGKPGPHKIQGIGAGFVPDILDTSIYDG 239
Query: 246 VVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVV 296
V+ V+++EA A+ A +EG+ GISSG A AA+++AK GK ++
Sbjct: 240 VITVTTEEAFAAARRAAREEGILGGISSGAAIHAALKVAKE-LGKGKKVLA 289
>1o58_A O-acetylserine sulfhydrylase; TM0665, structural genomics, J
protein structure initiative, joint center for
structural G transferase; 1.80A {Thermotoga maritima}
SCOP: c.79.1.1 PDB: 3fca_A*
Length = 303
Score = 523 bits (1351), Expect = 0.0
Identities = 145/292 (49%), Positives = 197/292 (67%), Gaps = 9/292 (3%)
Query: 6 SNIAKDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGL 65
+ + LIG+TP+V L++I +RI KLE P SVKDR MI DAE +GL
Sbjct: 8 HHHHHMMERLIGSTPIVRLDSID----SRIFLKLEKNNPGGSVKDRPALFMILDAEKRGL 63
Query: 66 ITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPA 125
+ G ++EPTSGN GI +A + A + +R+I+TMP +MS+ERR +L+ GAELVLT
Sbjct: 64 LKNG---IVEPTSGNMGIAIAMIGAKRGHRVILTMPETMSVERRKVLKMLGAELVLTPGE 120
Query: 126 KGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGT 185
GMKGAV+KA E +++ A+ML QFENP N H TTGPE+ K +IDA V+G+GT
Sbjct: 121 LGMKGAVEKALE-ISRETGAHMLNQFENPYNVYSHQFTTGPEILKQMDYQIDAFVAGVGT 179
Query: 186 GGTITGAGKFLKEK-NPNIKLYGIEPTESPVLSGGKPGPHKIQGIGAGFVPGVLEVNIID 244
GGTI+G G+ LK +K+ +EP +SPVLSGG+PG H IQGIGAGFVP +L+ ++ID
Sbjct: 180 GGTISGVGRVLKGFFGNGVKIVAVEPAKSPVLSGGQPGKHAIQGIGAGFVPKILDRSVID 239
Query: 245 EVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVV 296
EV+ V +EA E A+ LA KEGL VGISSG AAA+++A++ +++ V
Sbjct: 240 EVITVEDEEAYEMARYLAKKEGLLVGISSGANVAAALKVAQKLGPDARVVTV 291
>3dwg_A Cysteine synthase B; sulfur carrier protein complex, beta-grAsp
fold, amino-acid biosynthesis; HET: PLP; 1.53A
{Mycobacterium tuberculosis} PDB: 3fgp_A* 3dki_A*
3dwi_A*
Length = 325
Score = 485 bits (1252), Expect = e-174
Identities = 111/299 (37%), Positives = 158/299 (52%), Gaps = 18/299 (6%)
Query: 7 NIAKDVTELIGNTPLVYLNNIV-------NGCVARIAAKLEMMEPCSSVKDRIGYSMISD 59
+ + +GNTPLV L + +G R+ AKLE P S+KDR MI
Sbjct: 4 TRYDSLLQALGNTPLVGLQRLSPRWDDGRDGPHVRLWAKLEDRNPTGSIKDRPAVRMIEQ 63
Query: 60 AEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAEL 119
AEA GL+ PG + ++EPTSGNTGI LA A K YRLI MP + S+ERR +L +GA++
Sbjct: 64 AEADGLLRPG-ATILEPTSGNTGISLAMAARLKGYRLICVMPENTSVERRQLLELYGAQI 122
Query: 120 VLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDAL 179
+ + G AV A+E+ A P+ ML Q+ NPAN HY TGPEL I
Sbjct: 123 IFSAAEGGSNTAVATAKELAATNPSWVMLYQYGNPANTDSHYCGTGPELLADL-PEITHF 181
Query: 180 VSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGIGAGFVPGVLE 239
V+G+GT GT+ G G+FL+E N+K+ EP G + ++ + GFVP + +
Sbjct: 182 VAGLGTTGTLMGTGRFLREHVANVKIVAAEPRYG-------EGVYALRNMDEGFVPELYD 234
Query: 240 VNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGK--LIVV 296
I+ V + +A+ + L EG+F GIS+G AA+ + AG+ I +
Sbjct: 235 PEILTARYSVGAVDAVRRTRELVHTEGIFAGISTGAVLHAALGVGAGALAAGERADIAL 293
>2v03_A Cysteine synthase B; pyridoxal phosphate, cysteine biosynthesis,
transferase, ENZ kinetics, enzymatic sythesis of novel
compounds; HET: LLP CIT; 1.33A {Escherichia coli} PDB:
2bhs_A* 2bht_A* 2jc3_A*
Length = 303
Score = 482 bits (1243), Expect = e-174
Identities = 122/286 (42%), Positives = 174/286 (60%), Gaps = 11/286 (3%)
Query: 11 DVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGE 70
+ + IGNTPLV L + + + KLE P SVKDR SMI +AE +G I PG
Sbjct: 3 TLEQTIGNTPLVKLQRMGPDNGSEVWLKLEGNNPAGSVKDRAALSMIVEAEKRGEIKPG- 61
Query: 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKG 130
VLIE TSGNTGI LA +AA K YR+ + MP +MS ERR +RA+GAEL+L +GM+G
Sbjct: 62 DVLIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTKEQGMEG 121
Query: 131 AVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTIT 190
A A E+ + +L QF NP NP HY TTGPE+W+ +GGRI VS +GT GTIT
Sbjct: 122 ARDLALEMANRGEG-KLLDQFNNPDNPYAHYTTTGPEIWQQTGGRITHFVSSMGTTGTIT 180
Query: 191 GAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGIGAGFVPGVLEVNIIDEVVQVS 250
G +F++E++ + + G++P E + G + P ++PG+ +++DEV+ +
Sbjct: 181 GVSRFMREQSKPVTIVGLQPEEGSSIPGIRRWPT-------EYLPGIFNASLVDEVLDIH 233
Query: 251 SDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVV 296
+A T + LA++EG+F G+SSGGA A A+ +A N ++V
Sbjct: 234 QRDAENTMRELAVREGIFCGVSSGGAVAGALRVAA--ANPDAVVVA 277
>1wkv_A Cysteine synthase; homodimer, open alpha/beta folding, transferase;
HET: PLP; 2.00A {Aeropyrum pernix} SCOP: c.79.1.1
Length = 389
Score = 456 bits (1175), Expect = e-162
Identities = 71/290 (24%), Positives = 130/290 (44%), Gaps = 17/290 (5%)
Query: 11 DVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCS-SVKDRIGYSMISDAEAKGLITPG 69
D E TPLV + R+ KLE P S SVKDR +IS + + G
Sbjct: 89 DFFERGKPTPLVRSR-LQLPNGVRVWLKLEWYNPFSLSVKDRPAVEIISRLSRR--VEKG 145
Query: 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMK 129
S++ + TS N G+ L+ +A YR + +P + +++ R GA++++ A
Sbjct: 146 -SLVADATSSNFGVALSAVARLYGYRARVYLPGAAEEFGKLLPRLLGAQVIVDPEAPSTV 204
Query: 130 GAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWK---GSGGRIDALVSGIGTG 186
+ + + +K + QF N AN + H T E++ G + + +GT
Sbjct: 205 HLLPRVMK-DSKNEGFVHVNQFYNDANFEAHMRGTAREIFVQSRRGGLALRGVAGSLGTS 263
Query: 187 GTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGIGAGFVPGVLEVNIIDEV 246
G ++ A +L+ +P+I+ ++P + + G I+ + G + + ++I +
Sbjct: 264 GHMSAAAFYLQSVDPSIRAVLVQPAQGDSIPG-------IRRVETGMLW-INMLDISYTL 315
Query: 247 VQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVV 296
+V+ +EA+E +A +GL +G S G A A + A + VV
Sbjct: 316 AEVTLEEAMEAVVEVARSDGLVIGPSGGAAVKALAKKAAEGDLEPGDYVV 365
>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase;
HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB:
3pc2_A* 3pc4_A*
Length = 527
Score = 453 bits (1167), Expect = e-159
Identities = 115/300 (38%), Positives = 172/300 (57%), Gaps = 12/300 (4%)
Query: 7 NIAKDVTELIGNTPLVYLNNIV--NGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKG 64
I ++ E+IG TPLV LNNI +G + AK E + P SVKDRIGY M+ DAE +G
Sbjct: 49 QITPNILEVIGCTPLVKLNNIPASDGIECEMYAKCEFLNPGGSVKDRIGYRMVQDAEEQG 108
Query: 65 LITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTD- 123
L+ PG +IEPTSGNTGIGLA A K Y+ II MP MS E+ LR GA+++ T
Sbjct: 109 LLKPG-YTIIEPTSGNTGIGLAMACAVKGYKCIIVMPEKMSNEKVSALRTLGAKIIRTPT 167
Query: 124 --PAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVS 181
+G + A+++ +TPN+ +L Q+ N NP HY+ T E+ ++D +V
Sbjct: 168 EAAYDSPEGLIYVAQQLQRETPNSIVLDQYRNAGNPLAHYDGTAAEILWQLDNKVDMIVV 227
Query: 182 GIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPV-----LSGGKPGPHKIQGIGAGFVPG 236
GT GTI+G G+ +KE+ P+ ++ G++P S + L+ ++++GIG F P
Sbjct: 228 SAGTAGTISGIGRKIKEQVPSCQIVGVDPYGSILARPAELNKTDVQFYEVEGIGYDFPPT 287
Query: 237 VLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVV 296
V + ++D ++ + ++ L +EGL G SSGGA AA+E A++ G+ VV
Sbjct: 288 VFDDTVVDVWTKIGDSDCFPMSRRLNAEEGLLCGGSSGGAMHAALEHARK-LKKGQRCVV 346
>1jbq_A B, cystathionine beta-synthase, serine sulfhydrase; fold type II of
PLP enzymes, lyase; HET: HEM PLP; 2.60A {Homo sapiens}
SCOP: c.79.1.1 PDB: 1m54_A*
Length = 435
Score = 445 bits (1146), Expect = e-157
Identities = 118/300 (39%), Positives = 174/300 (58%), Gaps = 12/300 (4%)
Query: 7 NIAKDVTELIGNTPLVYLNNIV--NGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKG 64
I D+ + IG+TP+V +N I G + AK E SVKDRI MI DAE G
Sbjct: 97 KILPDILKKIGDTPMVRINKIGKKFGLKCELLAKCEFFNAGGSVKDRISLRMIEDAERDG 156
Query: 65 LITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTD- 123
+ PG +IEPTSGNTGIGLA AA + YR II MP MS E+ +LRA GAE+V T
Sbjct: 157 TLKPG-DTIIEPTSGNTGIGLALAAAVRGYRCIIVMPEKMSSEKVDVLRALGAEIVRTPT 215
Query: 124 --PAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVS 181
+ V A + + PN+++L Q+ N +NP HY+TT E+ + G++D LV+
Sbjct: 216 NARFDSPESHVGVAWRLKNEIPNSHILDQYRNASNPLAHYDTTADEILQQCDGKLDMLVA 275
Query: 182 GIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPV-----LSGGKPGPHKIQGIGAGFVPG 236
+GTGGTITG + LKEK P ++ G++P S + L+ + ++++GIG F+P
Sbjct: 276 SVGTGGTITGIARKLKEKCPGCRIIGVDPEGSILAEPEELNQTEQTTYEVEGIGYDFIPT 335
Query: 237 VLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVV 296
VL+ ++D+ + + +EA A++L +EGL G S+G A A++ A+ + G+ VV
Sbjct: 336 VLDRTVVDKWFKSNDEEAFTFARMLIAQEGLLCGGSAGSTVAVAVKAAQELQ-EGQRCVV 394
>2d1f_A Threonine synthase; amino acid synthesis, pyridoxal-5'-phosphate,
PLP, lyase; HET: PLP; 2.50A {Mycobacterium tuberculosis}
Length = 360
Score = 88.5 bits (220), Expect = 4e-20
Identities = 67/300 (22%), Positives = 110/300 (36%), Gaps = 32/300 (10%)
Query: 17 GNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEP 76
G TPL+ N+ I K+E + P S KDR ++DA A G ++
Sbjct: 37 GGTPLIAATNLSKQTGCTIHLKVEGLNPTGSFKDRGMTMAVTDALAHGQ-----RAVLCA 91
Query: 77 TSGNTGIGLAFMAAAKQYRLIITMPAS-MSLERRIILRAFGAELVLTDPAKGMKGAVQKA 135
++GNT A AA + +P +++ + GA+++ D ++ A
Sbjct: 92 STGNTSASAAAYAARAGITCAVLIPQGKIAMGKLAQAVMHGAKIIQID--GNFDDCLELA 149
Query: 136 EEILAKTPNAYMLQQFENPANPKIH--YETTGPELWKGSGGRIDALVSGIGTGGTITGAG 193
++ A P ++ N NP +T E+ G D +G G IT
Sbjct: 150 RKMAADFPTISLV----NSVNPVRIEGQKTAAFEIVDVLGTAPDVHALPVGNAGNITAYW 205
Query: 194 KFLKE--------KNPNIKLYGIEPTESPVLSGGKPGPHK---IQGIGAGFVP-GVLEVN 241
K E K P ++ G + + L G+P H I G V
Sbjct: 206 KGYTEYHQLGLIDKLP--RMLGTQAAGAAPLVLGEPVSHPETIATAIRIGSPASWTSAVE 263
Query: 242 IIDE----VVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVC 297
+ + S +E + L+A EG+FV +S + A ++ A VVC
Sbjct: 264 AQQQSKGRFLAASDEEILAAYHLVARVEGVFVEPASAASIAGLLKAIDDGWVARGSTVVC 323
>2zsj_A Threonine synthase; PLP dependent enzyme, lyase; HET: PLP; 1.80A
{Aquifex aeolicus}
Length = 352
Score = 87.7 bits (218), Expect = 8e-20
Identities = 67/302 (22%), Positives = 108/302 (35%), Gaps = 35/302 (11%)
Query: 17 GNTPLVYLNNIVN--GCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLI 74
GNTPL+ +N+ G +I K E + P S KDR IS A G +I
Sbjct: 29 GNTPLIEADNLARAIGFKGKIYLKYEGLNPTGSFKDRGMTLAISKAVEAGK-----RAVI 83
Query: 75 EPTSGNTGIGLAFMAAAKQYRLIITMPASM-SLERRIILRAFGAELVLTDPAKGMKGAVQ 133
++GNT A AA R + +P ++ + +GA+++ G
Sbjct: 84 CASTGNTSASAAAYAARAGLRAYVLLPKGAVAIGKLSQAMIYGAKVLAIQ---GTFDDAL 140
Query: 134 KAEEILAKTPNAYMLQQFENPANPKIH--YETTGPELWKGSGGRIDALVSGIGTGGTITG 191
+ + ++ N NP +T E+ G D +G G IT
Sbjct: 141 NIVRKIGENFPVEIV----NSVNPYRIEGQKTAAFEICDTLGEAPDYHFIPVGNAGNITA 196
Query: 192 AGKFLKE--------KNPNIKLYGIEPTESPVLSGGKPGPHK---IQGIGAGFVP-GVLE 239
K K K P ++ G + + + G P + I G
Sbjct: 197 YWKGFKIYYEEGKITKLP--RMMGWQAEGAAPIVKGYPIKNPQTIATAIKIGNPYSWKSA 254
Query: 240 VNIIDE----VVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIV 295
+ E + VS E + KL+A EG+F +S + A I++ + G +V
Sbjct: 255 LKAAQESGGKIDAVSDSEILYAYKLIASTEGVFCEPASAASVAGLIKLVREGFFKGGEVV 314
Query: 296 VC 297
C
Sbjct: 315 TC 316
>3aey_A Threonine synthase; PLP, pyridoxal phosphate, lyase; 1.92A {Thermus
thermophilus} PDB: 1uin_A* 1uim_A* 3aex_A* 1v7c_A
Length = 351
Score = 86.2 bits (214), Expect = 2e-19
Identities = 65/302 (21%), Positives = 107/302 (35%), Gaps = 35/302 (11%)
Query: 17 GNTPLVYLNNIVNGCV--ARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLI 74
G+TPL+ L R+ AK E + P S KDR +S A G +
Sbjct: 27 GSTPLIPLKGPEEARKKGIRLYAKYEGLNPTGSFKDRGMTLAVSKAVEGGA-----QAVA 81
Query: 75 EPTSGNTGIGLAFMAAAKQYRLIITMPASM-SLERRIILRAFGAELVLTDPAKGMKGAVQ 133
++GNT A AA I+ +PA +L + GA +V + G
Sbjct: 82 CASTGNTAASAAAYAARAGILAIVVLPAGYVALGKVAQSLVHGARIVQVE---GNFDDAL 138
Query: 134 KAEEILAKTPNAYMLQQFENPANPKIH--YETTGPELWKGSGGRIDALVSGIGTGGTITG 191
+ + L + ++ N NP +T E+ G +G G IT
Sbjct: 139 RLTQKLTEAFPVALV----NSVNPHRLEGQKTLAFEVVDELGDAPHYHALPVGNAGNITA 194
Query: 192 AGKFLKE--------KNPNIKLYGIEPTESPVLSGGKP--GPHKI-QGIGAGFVP-GVLE 239
K + P ++ G + + L G+P P + I G
Sbjct: 195 HWMGYKAYHALGKAKRLP--RMLGFQAAGAAPLVLGRPVERPETLATAIRIGNPASWQGA 252
Query: 240 VNIIDE----VVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIV 295
V +E + V+ +E + + LA +EG+F +S A A ++ + + V
Sbjct: 253 VRAKEESGGVIEAVTDEEILFAYRYLAREEGIFCEPASAAAMAGVFKLLREGRLEPESTV 312
Query: 296 VC 297
V
Sbjct: 313 VL 314
>1e5x_A Threonine synthase; threonine biosynthesis, PLP enzyme,
S-adenosyl-methionine, allostery; 2.25A {Arabidopsis
thaliana} SCOP: c.79.1.1 PDB: 2c2b_A* 2c2g_A*
Length = 486
Score = 84.8 bits (210), Expect = 2e-18
Identities = 51/311 (16%), Positives = 102/311 (32%), Gaps = 40/311 (12%)
Query: 17 GNTPLVYLNNIVN--GCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLI 74
GN+ L + + + K + S KD ++S + +
Sbjct: 129 GNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVG 188
Query: 75 EPTSGNTGIGLAFMAAAKQYRLIITMPA-SMSLERRIILRAFGAELVLTDPAKGMKGAVQ 133
++G+T L+ A+ I+ +PA +S+ + + A GA ++ D
Sbjct: 189 CASTGDTSAALSAYCASAGIPSIVFLPANKISMAQLVQPIANGAFVLSID---TDFDGCM 245
Query: 134 KAEEILAKTPNAYMLQQFENPANPKIH--YETTGPELWKGSGGRI-DALVSGIGTGGTIT 190
K + Y+ N N +T E+ + ++ D ++ G G I
Sbjct: 246 KLIREITAELPIYLA----NSLNSLRLEGQKTAAIEILQQFDWQVPDWVIVPGGNLGNIY 301
Query: 191 GAGKFLK--------EKNPNIKLYGIEPTE-SPVLSGGKPGPHKIQ----------GIGA 231
K K ++ P ++ + +P+ K G + I
Sbjct: 302 AFYKGFKXCQELGLVDRIP--RMVCAQAANANPLYLHYKSGWKDFKPMTASTTFASAIQI 359
Query: 232 GF-VPGVLEVNIIDE----VVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKR 286
G V V + + V + ++E + A A G+F+ +G A A ++ +
Sbjct: 360 GDPVSIDRAVYALKKCNGIVEEA-TEEELMDAMAQADSTGMFICPHTGVALTALFKLRNQ 418
Query: 287 PENAGKLIVVC 297
A V
Sbjct: 419 GVIAPTDRTVV 429
>4d9i_A Diaminopropionate ammonia-lyase; fold type II PLP-dependent enzyme,
tryptophan synthase beta like PLP-dependent enzymes
superfamily; HET: IT1; 2.00A {Escherichia coli} PDB:
4d9g_A* 4d9n_A* 4d9k_A* 4d9m_A*
Length = 398
Score = 80.2 bits (198), Expect = 4e-17
Identities = 56/304 (18%), Positives = 94/304 (30%), Gaps = 45/304 (14%)
Query: 19 TPLVYLNNIVNGC-VARIAAKLEMM--------------EPCSSVKDRIGYSM-ISDAEA 62
TPL L+++ N V +I K E + ++ + E
Sbjct: 45 TPLCALDDLANLFGVKKILVKDESKRFGLNAFXMLGGAYAIAQLLCEKYHLDIETLSFEH 104
Query: 63 KGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLT 122
+ T GN G G+A+ A +I MP + ER + GAE ++T
Sbjct: 105 LKNAIGEKMTFATTTDGNHGRGVAWAAQQLGQNAVIYMPKGSAQERVDAILNLGAECIVT 164
Query: 123 DPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIH------YETTGPELW---KGSG 173
D V+ + A+ ++Q KI Y T E + G
Sbjct: 165 DMNYDD--TVRLTMQ-HAQQHGWEVVQDTAWEGYTKIPTWIMQGYATLADEAVEQMREMG 221
Query: 174 GRIDALVSGIGTGGTITGAGKFLKE--KNPNIKLYGIEPTESPV----LSGGKPGPHKIQ 227
++ G G G +L + N+ +EP ++ G
Sbjct: 222 VTPTHVLLQAGVGAMAGGVLGYLVDVYSPQNLHSIIVEPDKADCIYRSGVKGDIVNVGGD 281
Query: 228 ------GIGAGFVPGVLEVNII----DEVVQVSSDEAIETAKLLALKEGLFVGISSGGAA 277
G+ G P L I+ + + A ++L G I SG +
Sbjct: 282 MATIMAGLACG-EPNPLGWEILRNCATQFISCQDSVAALGMRVLGNPYGNDPRIISGESG 340
Query: 278 AAAI 281
A +
Sbjct: 341 AVGL 344
>3ss7_X D-serine dehydratase; type II fold, ALFA,beta-elimination, P
5'-phosphate, lyase; HET: PLP; 1.55A {Escherichia coli}
PDB: 3ss9_X* 3r0x_A* 3r0z_A
Length = 442
Score = 79.8 bits (197), Expect = 8e-17
Identities = 52/284 (18%), Positives = 93/284 (32%), Gaps = 34/284 (11%)
Query: 32 VARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAA 91
V A KL + ++ D YS + E K + + ++GN G+ + M+A
Sbjct: 126 VLAHAEKLALEAGLLTLDD--DYSKLLSPEFKQFF--SQYSIAVGSTGNLGLSIGIMSAR 181
Query: 92 KQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQF 151
+++ + M A ++ LR+ G +V + + AV++ + PN +
Sbjct: 182 IGFKVTVHMSADARAWKKAKLRSHGVTVVEYE--QDYGVAVEEGRKAAQSDPNCF-FIDD 238
Query: 152 ENPANPKIHYETTGPEL--------WKGSGGRIDALVSGIGTGGTITGAGKFLKEK-NPN 202
EN + Y G L + G GG G LK +
Sbjct: 239 ENSRTLFLGYSVAGQRLKAQFAQQGRIVDADNPLFVYLPCGVGGGPGGVAFGLKLAFGDH 298
Query: 203 IKLYGIEPTESPV----LSGGKPGPHKIQGIGAGFV----------PGVLEVNII----D 244
+ + EPT SP + G +Q IG + + D
Sbjct: 299 VHCFFAEPTHSPCMLLGVHTGLHDQISVQDIGIDNLTAADGLAVGRASGFVGRAMERLLD 358
Query: 245 EVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPE 288
+S + LA +EG+ + S+ A +
Sbjct: 359 GFYTLSDQTMYDMLGWLAQEEGIRLEPSALAGMAGPQRVCASVS 402
>1p5j_A L-serine dehydratase; lyase; HET: PLP; 2.50A {Homo sapiens} SCOP:
c.79.1.1 PDB: 1pwh_A* 1pwe_A*
Length = 372
Score = 75.0 bits (185), Expect = 2e-15
Identities = 54/330 (16%), Positives = 108/330 (32%), Gaps = 60/330 (18%)
Query: 6 SNIAKDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMI---SDAEA 62
S L TP+ + + K++ +P S K R +
Sbjct: 34 SEFMMSGEPLHVKTPIRDSMALSKMAGTSVYLKMDSAQPSGSFKIRGIGHFCKRWAKQGC 93
Query: 63 KGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLT 122
+ ++GN G+ A+ A I +P + L+ GA +
Sbjct: 94 AHFVCS--------SAGNAGMAAAYAARQLGVPATIVVPGTTPALTIERLKNEGATCKVV 145
Query: 123 ----DPAKGMKGAVQKAEEILAKTPNAYMLQQFENP------ANPKIHYETTGPELWKGS 172
D A + A+ + P + F++P A + EL +
Sbjct: 146 GELLDEAF------ELAKALAKNNPGWVYIPPFDDPLIWEGHA-------SIVKELKETL 192
Query: 173 GGRIDALVSGIGTGGTITGAGKFLKE-KNPNIKLYGIEPTESPV----LSGGK----PGP 223
+ A+ +G GG + G + L+E ++ + +E + + GK P
Sbjct: 193 WEKPGAIALSVGGGGLLCGVVQGLQECGWGDVPVIAMETFGAHSFHAATTAGKLVSLPKI 252
Query: 224 HKI-QGIGAGFVPGVLEVNII----DEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAA 278
+ + +G G + + +S EA+ + E + V + GAA
Sbjct: 253 TSVAKALGVK-TVGSQALKLFQEHPIFSEVISDQEAVAAIEKFVDDEKILVE-PACGAAL 310
Query: 279 AAIE--IAKRPENAGK--------LIVVCS 298
AA+ + ++ + G +++VC
Sbjct: 311 AAVYSHVIQKLQLEGNLRTPLPSLVVIVCG 340
>1ve5_A Threonine deaminase; riken structural genomics/Pro initiative,
RSGI, structural genomics, lyase; HET: PLP; 2.15A
{Thermus thermophilus} SCOP: c.79.1.1
Length = 311
Score = 69.8 bits (172), Expect = 8e-14
Identities = 68/321 (21%), Positives = 116/321 (36%), Gaps = 59/321 (18%)
Query: 9 AKDVTELIGNTPLVY---LNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAE-AKG 64
+ + TPL+ L+ ++ R+ K E ++ S K R S E KG
Sbjct: 11 FRRIAPYTHRTPLLTSRLLDGLLG---KRLLLKAEHLQKTGSFKARGALSKALALENPKG 67
Query: 65 LITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 124
L+ +SGN G+A+ A + ++ MP S ++ RA+GAE+V
Sbjct: 68 LLAV--------SSGNHAQGVAYAAQVLGVKALVVMPEDASPYKKACARAYGAEVVDRGV 119
Query: 125 AKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIH-YE---------TTGPELW---KG 171
K + A + +T A IH ++ T G EL
Sbjct: 120 T--AKNREEVARALQEETGYAL------------IHPFDDPLVIAGQGTAGLELLAQAGR 165
Query: 172 SGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPV----LSGGKPGPHKIQ 227
G A+++ +G GG + G +K +P + G+EP + L G+ +
Sbjct: 166 MGVFPGAVLAPVGGGGLLAGLATAVKALSPTTLVLGVEPEAADDAKRSLEAGRILRLEAP 225
Query: 228 ------GIGAGFVPGVLEVNII----DEVVQVSSDEAIETAKLLALKEGLFVGISSGGAA 277
G+ G I+ D ++ VS + +E +LL + V GA
Sbjct: 226 PRTRADGVRTL-SLGERTFPILRERVDGILTVSEEALLEAERLLFTRTKQVV--EPTGAL 282
Query: 278 AAAIEIAKRPENAGKLIVVCS 298
A + L ++ S
Sbjct: 283 PLAAVLEHGARLPQTLALLLS 303
>1v71_A Serine racemase, hypothetical protein C320.14 in chromosome III;
dimer, PLP, isomerase; HET: PLP; 1.70A
{Schizosaccharomyces pombe} SCOP: c.79.1.1 PDB: 1wtc_A*
2zpu_A* 2zr8_A*
Length = 323
Score = 68.7 bits (169), Expect = 2e-13
Identities = 61/314 (19%), Positives = 112/314 (35%), Gaps = 60/314 (19%)
Query: 16 IGNTPLVY---LNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMI---SDAE-AKGLITP 68
TP++ +N A + K E + + K R + + ++A+ G++T
Sbjct: 24 ANKTPVLTSSTVNKEFV---AEVFFKCENFQKMGAFKFRGALNALSQLNEAQRKAGVLTF 80
Query: 69 GESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGM 128
+SGN +A A I MP + + +G ++++ D
Sbjct: 81 --------SSGNHAQAIALSAKILGIPAKIIMPLDAPEAKVAATKGYGGQVIMYDRY--K 130
Query: 129 KGAVQKAEEILAKTPNAYMLQQFENPANPKIH-YE---------TTGPELWKGSGGRIDA 178
+ A+EI + I Y+ T EL++ G +DA
Sbjct: 131 DDREKMAKEISEREGLTI------------IPPYDHPHVLAGQGTAAKELFE-EVGPLDA 177
Query: 179 LVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPV----LSGGKPGPHKIQ-----GI 229
L +G GG ++G+ + PN ++YG+EP G G
Sbjct: 178 LFVCLGGGGLLSGSALAARHFAPNCEVYGVEPEAGNDGQQSFRKGSIVHIDTPKTIADGA 237
Query: 230 GAGFVPGVLEVNII----DEVVQVSSDEAIETAKLLALKEGLFV-GISSGGAAAAAIEIA 284
G +II D+++ VS +E I+ K A + + V +G + AA
Sbjct: 238 QTQ-HLGNYTFSIIKEKVDDILTVSDEELIDCLKFYAARMKIVVEP--TGCLSFAAARAM 294
Query: 285 KRPENAGKLIVVCS 298
K ++ ++ S
Sbjct: 295 KEKLKNKRIGIIIS 308
>2rkb_A Serine dehydratase-like; PLP bound enzyme, enzyme found in human
cells, lyase, pyridoxal phosphate; HET: PLP; 2.80A {Homo
sapiens}
Length = 318
Score = 68.7 bits (169), Expect = 2e-13
Identities = 66/320 (20%), Positives = 107/320 (33%), Gaps = 53/320 (16%)
Query: 15 LIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMI---SDAEAKGLITPGES 71
TPL+ + + K E ++P S K R + + L+
Sbjct: 4 FHVVTPLLESWALSQVAGMPVFLKCENVQPSGSFKIRGIGHFCQEMAKKGCRHLVCS--- 60
Query: 72 VLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLT----DPAKG 127
+ GN GI A+ A I +P S SL+ L+ GAE+ LT D A
Sbjct: 61 -----SGGNAGIAAAYAARKLGIPATIVLPESTSLQVVQRLQGEGAEVQLTGKVWDEAN- 114
Query: 128 MKGAVQKAEEILAKTPNAYMLQQFENP------ANPKIHYETTGPELWKGSGGRIDALV- 180
+A+E LAK + F++P A + EL ALV
Sbjct: 115 -----LRAQE-LAKRDGWENVPPFDHPLIWKGHA-------SLVQELKAVLRTPPGALVL 161
Query: 181 SGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPV----LSGGKPGPHKI-----QGIGA 231
+ G G L+ ++ + +E + ++ GK + +GA
Sbjct: 162 AVGGGGLLAGVVAGLLEVGWQHVPIIAMETHGAHCFNAAITAGKLVTLPDITSVAKSLGA 221
Query: 232 GFVPGVLEVNII----DEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIE--IAK 285
+ + V EA+ + L E + V + GAA AAI + +
Sbjct: 222 K-TVAARALECMQVCKIHSEVVEDTEAVSAVQQLLDDERMLVE-PACGAALAAIYSGLLR 279
Query: 286 RPENAGKLIVVCSQFACITS 305
R + G L + I
Sbjct: 280 RLQAEGCLPPSLTSVVVIVC 299
>1tdj_A Biosynthetic threonine deaminase; allostery, cooperative, tetramer,
regulation, pyridoxal PHOS isoleucine biosynthesis; HET:
PLP; 2.80A {Escherichia coli} SCOP: c.79.1.1 d.58.18.2
d.58.18.2
Length = 514
Score = 67.3 bits (165), Expect = 1e-12
Identities = 73/323 (22%), Positives = 118/323 (36%), Gaps = 61/323 (18%)
Query: 12 VTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMI---SDAE-AKGLIT 67
V E TPL + + + I K E +P S K R Y+M+ ++ + A G+IT
Sbjct: 25 VYEAAQVTPLQKMEKLSSRLDNVILVKREDRQPVHSFKLRGAYAMMAGLTEEQKAHGVIT 84
Query: 68 PGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLT----D 123
++GN G+AF +A + +I MP + + + +R FG E++L D
Sbjct: 85 A--------SAGNHAQGVAFSSARLGVKALIVMPTATADIKVDAVRGFGGEVLLHGANFD 136
Query: 124 PAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYE------TTGPELWKGSGGRID 177
AK KA E L++ + F++P T EL + +D
Sbjct: 137 EAK------AKAIE-LSQQQGFTWVPPFDHP-------MVIAGQGTLALELLQ-QDAHLD 181
Query: 178 ALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPV----LSGGKPGPHKIQGIGAGF 233
+ +G GG G +K+ P IK+ +E +S L G P + +G F
Sbjct: 182 RVFVPVGGGGLAAGVAVLIKQLMPQIKVIAVEAEDSACLKAALDAGH--PVDLPRVGL-F 238
Query: 234 V-------PGVLEVNII----DEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIE 282
G + D+++ V SD K L S A A +
Sbjct: 239 AEGVAVKRIGDETFRLCQEYLDDIITVDSDAICAAMKDLFEDVRAVAEPSGALALAGMKK 298
Query: 283 IAKRPENAGKLIVVCSQFACITS 305
G+ + I S
Sbjct: 299 YIALHNIRGERLA------HILS 315
>3iau_A Threonine deaminase; pyridoxal phosphate, amino-acid biosynthesis,
defensive PROT jasmonic acid pathway, jasmonic
acid,structural genomics; HET: LLP 15P; 2.35A {Solanum
lycopersicum}
Length = 366
Score = 66.1 bits (162), Expect = 2e-12
Identities = 72/323 (22%), Positives = 113/323 (34%), Gaps = 61/323 (18%)
Query: 12 VTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMI---SDAE-AKGLIT 67
V ++ +PL + + K E + S K R Y+M+ S E KG+IT
Sbjct: 54 VYDVAIESPLELAEKLSDRLGVNFYIKREDKQRVFSFKLRGAYNMMSNLSREELDKGVIT 113
Query: 68 PGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLT----D 123
++GN G+A I MP + + +RA G ++VL D
Sbjct: 114 A--------SAGNHAQGVALAGQRLNCVAKIVMPTTTPQIKIDAVRALGGDVVLYGKTFD 165
Query: 124 PAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYE------TTGPELWKGSGGRID 177
A+ A E L++ + F++P T G E+ + I
Sbjct: 166 EAQ------THALE-LSEKDGLKYIPPFDDP-------GVIKGQGTIGTEINR-QLKDIH 210
Query: 178 ALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPV----LSGGKPGPHKIQGIGAGF 233
A+ +G GG I G F K+ PN K+ G+EP + L G F
Sbjct: 211 AVFIPVGGGGLIAGVATFFKQIAPNTKIIGVEPYGAASMTLSLHEGHRVKLSNVDT---F 267
Query: 234 VPGV---------LEV--NIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIE 282
GV +ID +V V++D K + + + S A A A
Sbjct: 268 ADGVAVALVGEYTFAKCQELIDGMVLVANDGISAAIKDVYDEGRNILETSGAVAIAGAAA 327
Query: 283 IAKRPENAGKLIVVCSQFACITS 305
+ + + IV I S
Sbjct: 328 YCEFYKIKNENIV------AIAS 344
>3l6b_A Serine racemase; pyridoxal phosphate, PLP, isomerase; HET: PLP;
1.50A {Homo sapiens} PDB: 3l6r_A* 3hmk_A* 3l6c_A*
Length = 346
Score = 65.7 bits (161), Expect = 3e-12
Identities = 62/309 (20%), Positives = 121/309 (39%), Gaps = 55/309 (17%)
Query: 19 TPLVY---LNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMIS-------DAEAKGLITP 68
TP++ LN + + K E+ + S K R + + + + K ++T
Sbjct: 26 TPVLTSSILNQLTG---RNLFFKCELFQKTGSFKIRGALNAVRSLVPDALERKPKAVVTH 82
Query: 69 GESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGM 128
+SGN G L + A + I +P + +++ ++A+GA +V +P+
Sbjct: 83 --------SSGNHGQALTYAAKLEGIPAYIVVPQTAPDCKKLAIQAYGASIVYCEPS--D 132
Query: 129 KGAVQKAEEILAKTPNAYMLQQFENPANPKIHYE------TTGPELWKGSGGRIDALVSG 182
+ A+ + +T M+ + P T E+ +DALV
Sbjct: 133 ESRENVAKRVTEET-EGIMVHPNQEP-------AVIAGQGTIALEVLNQVPL-VDALVVP 183
Query: 183 IGTGGTITGAGKFLKEKNPNIKLYGIEPTESPV----LSGGKPGPHKIQ------GIGAG 232
+G GG + G +K P++K+Y EP+ + GK P+ G+ +
Sbjct: 184 VGGGGMLAGIAITVKALKPSVKVYAAEPSNADDCYQSKLKGKLMPNLYPPETIADGVKSS 243
Query: 233 FVPGVLEVNII----DEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPE 288
G+ II D++ V+ DE +L+ + L + ++G AA + +
Sbjct: 244 --IGLNTWPIIRDLVDDIFTVTEDEIKCATQLVWERMKLLIEPTAGVGVAAVLSQHFQTV 301
Query: 289 NA-GKLIVV 296
+ K I +
Sbjct: 302 SPEVKNICI 310
>2gn0_A Threonine dehydratase catabolic; TDCB, biodegradative threonine
deaminase, PLP, threonine DEH L-threonine metabolism;
HET: LLP; 1.70A {Salmonella typhimurium} PDB: 2gn1_A*
2gn2_A*
Length = 342
Score = 64.5 bits (158), Expect = 6e-12
Identities = 65/315 (20%), Positives = 114/315 (36%), Gaps = 46/315 (14%)
Query: 9 AKDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMI---SDAE-AKG 64
K + I T + N C I K E M+ S K R ++ + ++AE KG
Sbjct: 31 KKRLAGKIYKTGMPRSNYFSERCKGEIFLKFENMQRTGSFKIRGAFNKLSSLTEAEKRKG 90
Query: 65 LITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 124
++ ++GN G++ A + MP + + AE+VL
Sbjct: 91 VVAC--------SAGNHAQGVSLSCAMLGIDGKVVMPKGAPKSKVAATCDYSAEVVLHG- 141
Query: 125 AKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYE------TTGPELWKGSGGRIDA 178
+ K E + +T + ++ + T G E+ + +D
Sbjct: 142 -DNFNDTIAKVSE-IVETEGRIFIPPYD-------DPKVIAGQGTIGLEIME-DLYDVDN 191
Query: 179 LVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPV----LSGGKP----GPHKI-QGI 229
++ IG GG I G +K NP IK+ G++ G+ + G
Sbjct: 192 VIVPIGGGGLIAGIAIAIKSINPTIKVIGVQAENVHGMAASYYTGEITTHRTTGTLADGC 251
Query: 230 GAGFVPGVLEVNII----DEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAK 285
PG L I+ D++V VS DE I + + ++ + +G A AA+ K
Sbjct: 252 -DVSRPGNLTYEIVRELVDDIVLVSEDE-IRNSMIALIQRNKVITEGAGALACAALLSGK 309
Query: 286 RPENA--GKLIVVCS 298
+ K + + S
Sbjct: 310 LDSHIQNRKTVSIIS 324
>4d9b_A D-cysteine desulfhydrase; fold type II PLP-dependent enzyme or
tryptophan synthase BET like family, PLP dependent
enzyme, lyase; HET: PMP; 1.67A {Salmonella typhimurium}
PDB: 4d96_A* 4d9c_A* 4d9e_A* 4d9f_A* 4d97_A* 4d8w_A*
4d8u_A* 4d8t_A* 4d92_A* 4d99_A*
Length = 342
Score = 44.3 bits (104), Expect = 3e-05
Identities = 61/293 (20%), Positives = 113/293 (38%), Gaps = 31/293 (10%)
Query: 17 GNTPLVYLNNIVNGCVARIAAKLEMMEPCSS--VKDRIGYSMISDAEAKG---LITPGES 71
TPL YL + + I K + + P + K R +++DA +G LIT G
Sbjct: 31 APTPLEYLPRLSDYLGREIYIKRDDVTPIAMGGNKLRKLEFLVADALREGADTLITAGAI 90
Query: 72 VLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLE--------RRIILRAFGAELVLTD 123
N A +AA + + + R++L F ++ + D
Sbjct: 91 ------QSNHVRQTAAVAAKLGLHCVALLENPIGTTAENYLTNGNRLLLDLFNTQIEMCD 144
Query: 124 PAKGM-KGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWK--GSGGRIDALV 180
A I A+ Y++ + A + Y + E+ + + ++V
Sbjct: 145 ALTDPDAQLQTLATRIEAQGFRPYVIPVGGSSALGAMGYVESALEIAQQCEEVVGLSSVV 204
Query: 181 SGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGIGAGFVPGV--L 238
G+ GT G L+ P+++L G+ + S + KP +Q AG +
Sbjct: 205 VASGSAGTHAGLAVGLEHLMPDVELIGVTVSRSV--AEQKPKVIALQQAIAGQLALTATA 262
Query: 239 EVNIIDEVVQ----VSSDEAIETAKLLALKEGLFVG-ISSGGAAAAAIEIAKR 286
++++ D+ V +D +E KLLA EG+ + + +G A A I+ +
Sbjct: 263 DIHLWDDYFAPGYGVPNDAGMEAVKLLASLEGVLLDPVYTGKAMAGLIDGISQ 315
>1tzj_A ACC deaminase, 1-aminocyclopropane-1-carboxylate deaminase;
substrate, PLP, crystal, complex, hydrolase; HET: PLP;
1.99A {Pseudomonas SP} SCOP: c.79.1.1 PDB: 1rqx_A*
1tz2_A* 1tyz_A* 1tzk_A* 1tzm_A*
Length = 338
Score = 42.9 bits (101), Expect = 6e-05
Identities = 25/180 (13%), Positives = 52/180 (28%), Gaps = 23/180 (12%)
Query: 135 AEEILAKTPNAYML-QQFENPANPKIHY---ETTGPELWKGSGGRIDALVSGIGTGGTIT 190
E + A Y + + + + G + D +V TG T
Sbjct: 145 LESVRAAGGKPYAIPAGCSDHPLGGLGFVGFAEEVRAQEAELGFKFDYVVVCSVTGSTQA 204
Query: 191 GAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGI--------GAGFVPGVLEVNI 242
G ++ G+ + +I I G +V +
Sbjct: 205 GMVVGFAADGRADRVIGV-----DASAKPAQTREQITRIARQTAEKVGLERDIMRADVVL 259
Query: 243 IDEVVQ----VSSDEAIETAKLLALKEGLFVG-ISSGGAAAAAIEIAKRPE-NAGKLIVV 296
+ + ++ +E +L A EG+ + G + IE+ + E G ++
Sbjct: 260 DERFAGPEYGLPNEGTLEAIRLCARTEGMLTDPVYEGKSMHGMIEMVRNGEFPEGSRVLY 319
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.9 bits (87), Expect = 0.004
Identities = 36/255 (14%), Positives = 67/255 (26%), Gaps = 112/255 (43%)
Query: 93 QYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAE--EILAKTPN----AY 146
QY+ I+ + AF D K + K E I+ + +
Sbjct: 17 QYKDIL----------SVFEDAFVDNFDCKDVQDMPKSILSKEEIDHII-MSKDAVSGTL 65
Query: 147 ML------------QQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGK 194
L Q+F +I+Y+ + L+S I T
Sbjct: 66 RLFWTLLSKQEEMVQKFVEEVL-RINYK------F---------LMSPIKTE-------- 101
Query: 195 FLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEA 254
++ + ++Y + + + F V+ + +++
Sbjct: 102 -QRQPSMMTRMY--IEQRDRLYNDNQV-----------FAK--YNVSRLQPYLKL----- 140
Query: 255 IETAKLLALKEGLFVGISS-GGAAAAAIEIAKRPENAGKLIVVCSQFACITSDSWLIAIT 313
LL L+ V I G+ GK +W+
Sbjct: 141 --RQALLELRPAKNVLIDGVLGS--------------GK--------------TWVALDV 170
Query: 314 CMS------FSF-IF 321
C+S F IF
Sbjct: 171 CLSYKVQCKMDFKIF 185
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.7 bits (87), Expect = 0.005
Identities = 43/208 (20%), Positives = 67/208 (32%), Gaps = 70/208 (33%)
Query: 60 AEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLE------RRIILR 113
A+ G TPGE L G TG + A I + S E R+ I
Sbjct: 253 AKLLGF-TPGE--LRSYLKGATGHSQGLVTAV-----AIA--ETDSWESFFVSVRKAITV 302
Query: 114 AF--GAELVLTDPAKGMK-GAVQKAEEILAKTPNAYML-------QQFE------N---P 154
F G P + ++ + E P + ML +Q + N P
Sbjct: 303 LFFIGVRCYEAYPNTSLPPSILEDSLENNEGVP-SPMLSISNLTQEQVQDYVNKTNSHLP 361
Query: 155 ANPKIHYETTGPELWKGSGGRIDALVSG----IGTG--GTITGAGKFL-KEKNPNIKLYG 207
A ++ I +LV+G + +G ++ G L K K P+ G
Sbjct: 362 AGKQVE---------------I-SLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPS----G 401
Query: 208 IEPTESPVLSGGKPGPHKIQGIGAGFVP 235
++ + P S K F+P
Sbjct: 402 LDQSRIP-FSERKL------KFSNRFLP 422
Score = 34.6 bits (79), Expect = 0.043
Identities = 49/283 (17%), Positives = 84/283 (29%), Gaps = 90/283 (31%)
Query: 1 MAVE---SSNIAKDV----------------TELIGNTP--LVYLNNIVNGCVAR---IA 36
M ++ +S A+DV +++ N P L G R A
Sbjct: 1631 MGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSA 1690
Query: 37 AKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRL 96
E + ++I + + + E L+ T T L M A +
Sbjct: 1691 MIFETIVDGKLKTEKIFKEI--NEHSTSYTFRSEKGLLSATQ-FTQPALTLMEKA-AFED 1746
Query: 97 I-----ITMPASM---SL-ERRIILRAFGAELV-------LTDPAK-----G--MKGAVQ 133
+ I A+ SL E + A L + + G M+ AV
Sbjct: 1747 LKSKGLIPADATFAGHSLGE-------YAA-LASLADVMSIESLVEVVFYRGMTMQVAVP 1798
Query: 134 KAEE------ILAKTPNAYMLQQFENPANPKI---HYETTGPELW------KGS----GG 174
+ E ++A P + F A + + TG + + G
Sbjct: 1799 RDELGRSNYGMIAINPGR-VAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAG 1857
Query: 175 RIDALVSGIGTGGTITGAGKFLKEKN-PNIKL---YGIEPTES 213
+ AL T+T F+K + I+L +E E
Sbjct: 1858 DLRAL-------DTVTNVLNFIKLQKIDIIELQKSLSLEEVEG 1893
Score = 31.2 bits (70), Expect = 0.51
Identities = 51/327 (15%), Positives = 88/327 (26%), Gaps = 125/327 (38%)
Query: 43 EPCSSVK--DR-IGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQY----- 94
EP + + + +GY +S + + VL L Y
Sbjct: 53 EPTTPAELVGKFLGY--VSSLVEPSKVGQFDQVL----------NLCLTEFENCYLEGND 100
Query: 95 ------RLIITMPASMSLERRIILRAFGAELVLTDP-AKGMKGA-VQKAEEILAK----- 141
+L+ ++ + +I A ++ P K A + E A+
Sbjct: 101 IHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIF 160
Query: 142 ----TPNAYM--LQQFENPANPKIHYETTGP---ELWKGSGGRIDALVSGIGTGGTITGA 192
+ Y L+ Y+T +L K S + L+ +
Sbjct: 161 GGQGNTDDYFEELRDL---------YQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQ 211
Query: 193 G----KFLKEKNPNIKLYGIEPTE-----SPVLSGGKPGPHKIQGIGAGFVPGVLEVNII 243
G ++L+ NP+ P + P+ S P IG
Sbjct: 212 GLNILEWLE--NPSNT-----PDKDYLLSIPI-SC----P----LIG------------- 242
Query: 244 DEVVQVSSDEAIETAKLLALKEGLFVGISSGGA-------AAAAIEIAKRPENAGKLIVV 296
V+Q++ TAKLL G G A AI
Sbjct: 243 --VIQLAHYVV--TAKLLGFTPGELRSYLKGATGHSQGLVTAVAIA-------------- 284
Query: 297 CSQFACITSDSW----LIAITCMSFSF 319
+DSW + ++ F
Sbjct: 285 -------ETDSWESFFVSVRKAITVLF 304
Score = 30.4 bits (68), Expect = 1.1
Identities = 34/178 (19%), Positives = 53/178 (29%), Gaps = 71/178 (39%)
Query: 192 AGKFLKEKNPNIKLYGI--------EPTESPVLSGGKPGPHKIQGIGAGFVPGVLEVN-- 241
A K+ YG P + GG+ G + I + + E
Sbjct: 1649 ADNHFKDT------YGFSILDIVINNPVNLTIHFGGEKG----KRIRENYSAMIFETIVD 1698
Query: 242 -------IIDEVVQVSS------DE-----------AI---ETAKLLALKE-GL------ 267
I E+ + S+ ++ A+ E A LK GL
Sbjct: 1699 GKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADAT 1758
Query: 268 FVGISSG--GAAAA---------AIEI-AKRPENAGKLI-VVCSQFACITSDSWLIAI 312
F G S G A A+ +E+ R G + V + S+ +IAI
Sbjct: 1759 FAGHSLGEYAALASLADVMSIESLVEVVFYR----GMTMQVAVPRDELGRSNYGMIAI 1812
>1qop_B Tryptophan synthase beta chain; lyase, carbon-oxygen lyase,
tryptophan biosynthesis, pyridoxal phosphate; HET: IPL
PLP; 1.4A {Salmonella typhimurium} SCOP: c.79.1.1 PDB:
1k7e_B* 1k7f_B* 1kfb_B* 1k3u_B* 1tjp_B* 1wbj_B* 2cli_B*
2clk_B* 2cll_B* 2j9x_B* 3cep_B* 1kfc_B* 1k8x_B* 1kfj_B*
1kfk_B* 2rh9_B* 2rhg_B* 2j9y_B* 1cw2_B* 1a5s_B* ...
Length = 396
Score = 36.7 bits (86), Expect = 0.008
Identities = 16/53 (30%), Positives = 28/53 (52%)
Query: 245 EVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVC 297
+ V ++ DEA+E K L EG+ + S A A A+++ + +L+VV
Sbjct: 322 DYVSITDDEALEAFKTLCRHEGIIPALESSHALAHALKMMREQPEKEQLLVVN 374
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.2 bits (77), Expect = 0.021
Identities = 7/22 (31%), Positives = 12/22 (54%), Gaps = 2/22 (9%)
Query: 196 LKEKNPNIKLYGIEPTESPVLS 217
LK+ ++KLY +P L+
Sbjct: 22 LKKLQASLKLY--ADDSAPALA 41
>1x1q_A Tryptophan synthase beta chain; structural genomics, riken
structural genomics/proteomics initiative, RSGI, NPPSFA;
2.50A {Thermus thermophilus}
Length = 418
Score = 34.5 bits (80), Expect = 0.035
Identities = 38/160 (23%), Positives = 59/160 (36%), Gaps = 40/160 (25%)
Query: 174 GRI-DALVSGIGTGGTITGA-GKFLKEKNPNIKLYGIEP----TESP----VLSGGKPG- 222
GR+ DAL++ +G G G F KL G+E + + GK G
Sbjct: 243 GRLPDALIAAVGGGSNAIGLFAPFAYLPEGRPKLIGVEAAGEGLSTGRHAASIGAGKRGV 302
Query: 223 ------------------PHKIQGIGAGF-VPGV------LEVNIIDEVVQVSSDEAIET 257
H + AG PGV + E V+ +EA+E
Sbjct: 303 LHGSYMYLLYDHDGQITPAHSVS---AGLDYPGVGPEHSYYADAGVAEYASVTDEEALEG 359
Query: 258 AKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVC 297
KLLA EG+ + S A A A ++ + +++V+
Sbjct: 360 FKLLARLEGIIPALESAHAIAYAAKVVPE-MDKDQVVVIN 398
>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase,
cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A
{Streptomyces SP} PDB: 4a10_A
Length = 447
Score = 34.4 bits (79), Expect = 0.040
Identities = 28/144 (19%), Positives = 48/144 (33%), Gaps = 13/144 (9%)
Query: 54 YSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILR 113
Y M+ + + G+ VLI SG G + S ++ +R
Sbjct: 207 YRMLVS-DRGAQMKQGDIVLIWGASGGLGSYAIQFVKNGGGIPVAV---VSSAQKEAAVR 262
Query: 114 AFGAELVLTDPAKGMKGAVQK-AEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGS 172
A G +LV+ G+ + ++ L + P I +E TG + S
Sbjct: 263 ALGCDLVINRAELGITDDIADDPRRVVETGRKLAKLVVEKAGREPDIVFEHTGRVTFGLS 322
Query: 173 ------GGRIDALVSGIGTGGTIT 190
GG + + G +G T
Sbjct: 323 VIVARRGGTV--VTCGSSSGYLHT 344
>1v8z_A Tryptophan synthase beta chain 1; beta+alpha, riken structural
genomics/proteomics initiative, structural genomics,
lyase; HET: PLP; 2.21A {Pyrococcus furiosus} SCOP:
c.79.1.1 PDB: 1wdw_B*
Length = 388
Score = 33.7 bits (78), Expect = 0.068
Identities = 39/160 (24%), Positives = 65/160 (40%), Gaps = 42/160 (26%)
Query: 174 GRI-DALVSGIGTGGTITGA-GKFLKEKNPNIKLYGIEP----TESP----VLSGGKPG- 222
G++ D +V+ +G G G F+ + +KL G+E ES L+ G+ G
Sbjct: 216 GQLPDVIVACVGGGSNAMGIFYPFVND--KKVKLVGVEAGGKGLESGKHSASLNAGQVGV 273
Query: 223 ------------------PHKIQGIGAGF-VPGV------LEVNIIDEVVQVSSDEAIET 257
H I G PGV L+ E V V+ +EA++
Sbjct: 274 FHGMLSYFLQDEEGQIKPTHSIA---PGLDYPGVGPEHAYLKKIQRAEYVTVTDEEALKA 330
Query: 258 AKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVC 297
L+ EG+ + S A A A+++AK + ++I+V
Sbjct: 331 FHELSRTEGIIPALESAHAVAYAMKLAKEM-SRDEIIIVN 369
>2o2e_A Tryptophan synthase beta chain; amino-acid biosynthesis, tryptophan
biosynthesis, structural genomics; 2.20A {Mycobacterium
tuberculosis} PDB: 2o2j_A
Length = 422
Score = 33.4 bits (77), Expect = 0.098
Identities = 41/160 (25%), Positives = 61/160 (38%), Gaps = 42/160 (26%)
Query: 174 GRI-DALVSGIGTGGTITGA-GKFLKEKNPNIKLYGIEP----TESP----VLSGGKPG- 222
GR+ DA+V+ +G G G FL + P ++L G E E+ + G PG
Sbjct: 247 GRLPDAVVACVGGGSNAIGIFHAFLDD--PGVRLVGFEAAGDGVETGRHAATFTAGSPGA 304
Query: 223 ------------------PHKIQGIGAGF-VPGV------LEVNIIDEVVQVSSDEAIET 257
H I AG PGV L+ + ++ EA++
Sbjct: 305 FHGSFSYLLQDEDGQTIESHSIS---AGLDYPGVGPEHAWLKEAGRVDYRPITDSEAMDA 361
Query: 258 AKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVC 297
LL EG+ I S A A A+++ G +IVV
Sbjct: 362 FGLLCRMEGIIPAIESAHAVAGALKLGVE-LGRGAVIVVN 400
>1f2d_A 1-aminocyclopropane-1-carboxylate deaminase; carbon-carbon L open
twisted alpha/beta, lyase; HET: PLP; 2.00A {Williopsis
saturnus} SCOP: c.79.1.1 PDB: 1j0e_A* 1j0d_A* 1j0c_A*
Length = 341
Score = 32.4 bits (73), Expect = 0.20
Identities = 39/309 (12%), Positives = 81/309 (26%), Gaps = 52/309 (16%)
Query: 17 GNTPLVYLNNIVN--GCVARIAAK-LEMMEPC--SSVKDRIGYSMISDAEAKGLITPGES 71
G +P+ LN + G + AK + K R ++ D +
Sbjct: 14 GPSPISNLNRLSQHLGSKVNVYAKREDCNSGLAFGGNKLRKLEYIVPDIVEGDY-----T 68
Query: 72 VLIEPTSGNTGIGLAFMAAAKQYRL------------------IITMPASMSLERRIILR 113
L+ + A A + + ++ L R +
Sbjct: 69 HLVSIGGRQSNQTRMVAALAAKLGKKCVLIQEDWVPIPEAEKDVYNRVGNIELSR---IM 125
Query: 114 AFGAELVLTDPAKGMKGAVQK-AEEILAKTPNAYMLQQ-FENPANPKIHYETTGPEL--- 168
++ GM+ + +E+ Y + + + E+
Sbjct: 126 GADVRVIEDGFDIGMRKSFANALQELEDAGHKPYPIPAGCSEHKYGGLGFVGFADEVINQ 185
Query: 169 WKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQG 228
G + D +V TG T G + + + I + +
Sbjct: 186 EVELGIKFDKIVVCCVTGSTTAGILAGMAQYGRQDDVIAI-----DASFTSEKTKEQTLR 240
Query: 229 I------GAGFVPGVLEVNIIDEVVQ----VSSDEAIETAKLLALKEGLFV-GISSGGAA 277
I G + + V ++ IE + A +EG+ + G +
Sbjct: 241 IANNTAKLIGVEHEFKDFTLDTRFAYPCYGVPNEGTIEAIRTCAEQEGVLTDPVYEGKSM 300
Query: 278 AAAIEIAKR 286
I + K
Sbjct: 301 QGLIALIKE 309
>3krt_A Crotonyl COA reductase; structural genomics, protein structure
initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces
coelicolor} PDB: 3hzz_A
Length = 456
Score = 30.9 bits (70), Expect = 0.60
Identities = 30/146 (20%), Positives = 51/146 (34%), Gaps = 17/146 (11%)
Query: 54 YSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQY--RLIITMPASMSLERRII 111
Y + G+ G++VLI SG G+G A I S ++ I
Sbjct: 215 YRQLVSRNGAGM-KQGDNVLIWGASG--GLGSYATQFALAGGANPICV---VSSPQKAEI 268
Query: 112 LRAFGAELVLTDPAKGMKGAVQKAEEILAKTPN-AYMLQQFENPANPKIHYETTGPELWK 170
RA GAE ++ A+G + + + + +++ + I +E G E +
Sbjct: 269 CRAMGAEAIIDRNAEGYRFWKDENTQDPKEWKRFGKRIRELTGGEDIDIVFEHPGRETFG 328
Query: 171 GS------GGRIDALVSGIGTGGTIT 190
S GG I +G
Sbjct: 329 ASVFVTRKGGTI--TTCASTSGYMHE 352
>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific]
1,mitochondrial; oxidoreductase, thioester reduction,
fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2
c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A
Length = 364
Score = 30.4 bits (69), Expect = 0.67
Identities = 14/79 (17%), Positives = 29/79 (36%), Gaps = 4/79 (5%)
Query: 66 ITPGESVLIEPTSGNTGIGLAF--MAAAKQYRLI-ITMPASMSLERRIILRAFGAELVLT 122
+TPG+ I+ G + +G + + I + E L+ GA V+T
Sbjct: 164 LTPGKDWFIQ-NGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGATQVIT 222
Query: 123 DPAKGMKGAVQKAEEILAK 141
+ + +E + +
Sbjct: 223 EDQNNSREFGPTIKEWIKQ 241
>2ocg_A Valacyclovir hydrolase; alpha beta hydrolase fold; 1.75A {Homo
sapiens} PDB: 2oci_A* 2ock_A 2ocl_A
Length = 254
Score = 29.9 bits (68), Expect = 0.90
Identities = 9/31 (29%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 268 FVGISSGGAAAAAIEIAKRPENAGKLIVVCS 298
+G S GG A AK P K+++ +
Sbjct: 98 LLGWSDGGITALIA-AAKYPSYIHKMVIWGA 127
>1wiw_A Glucose-6-phosphate isomerase like protein; riken structural
genomics/proteomics initiative, RSGI, structural
genomics; 2.00A {Thermus thermophilus} SCOP: c.80.1.1
Length = 290
Score = 29.6 bits (66), Expect = 1.1
Identities = 11/68 (16%), Positives = 20/68 (29%), Gaps = 5/68 (7%)
Query: 210 PTESPVLSGGKPGPHKIQGIGAGFVPGVLEV--NIIDEVVQVSSDEAIETAKLLALKEGL 267
PV PGPH G G G +L + +E + + + +
Sbjct: 25 VGTGPVPGEAYPGPHAALGYGEGQFAALLSGLPDWGEEGTLFLLEGGYDLGEAAGMA--- 81
Query: 268 FVGISSGG 275
+ +
Sbjct: 82 LLAETGRA 89
>1wom_A RSBQ, sigma factor SIGB regulation protein RSBQ; alpha/beta
hydrolase, signaling protein; 2.50A {Bacillus subtilis}
PDB: 1wpr_A*
Length = 271
Score = 29.5 bits (67), Expect = 1.3
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 261 LALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVCS 298
L LKE +FVG S G I +RPE L++V
Sbjct: 87 LDLKETVFVGHSVGALIGMLASI-RRPELFSHLVMVGP 123
>2qmq_A Protein NDRG2, protein NDR2; alpha/beta-hydrolases fold, NDR
family, developmental protei differentiation,
neurogenesis, phosphorylation; HET: 2PE; 1.70A {Mus
musculus} PDB: 2xmq_A 2xmr_A 2xms_A
Length = 286
Score = 29.0 bits (64), Expect = 2.3
Identities = 8/59 (13%), Positives = 18/59 (30%), Gaps = 1/59 (1%)
Query: 251 SDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVCSQFACITSDSWL 309
+D + L + VG+ +G + P+ L+++ W
Sbjct: 98 ADMIPCILQYLNFSTIIGVGVGAGAYILSRY-ALNHPDTVEGLVLINIDPNAKGWMDWA 155
>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural
genomics, NPPSFA, natio project on protein structural
and functional analyses; 2.30A {Thermus thermophilus}
Length = 343
Score = 28.7 bits (65), Expect = 2.8
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 7/60 (11%)
Query: 63 KGLITPGESVLIEPTSGNTGIGLAFMAAAKQY--RLIITMPASMSLERRIILRAFGAELV 120
K + PG+ VL+ G+ +A + AK + R+I T + S ++ +A GA+
Sbjct: 161 KLGVRPGDDVLVMAAGS--GVSVAAIQIAKLFGARVIAT---AGSEDKLRRAKALGADET 215
>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33;
1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A*
3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*
Length = 276
Score = 28.1 bits (63), Expect = 3.4
Identities = 19/75 (25%), Positives = 29/75 (38%), Gaps = 26/75 (34%)
Query: 77 TSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLT--DPAKGMKGAVQK 134
T GN GIGL A + + R F ++VLT D +G AV
Sbjct: 10 TGGNKGIGL---AIVRD-----------------LCRLFSGDVVLTARDVTRGQA-AV-- 46
Query: 135 AEEILAKTPNAYMLQ 149
+++ A+ + Q
Sbjct: 47 -QQLQAEGLSPRFHQ 60
>2cmg_A Spermidine synthase; transferase, putrescine
aminopropyltransferase, spermidine biosynthesis,
polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori}
PDB: 2cmh_A
Length = 262
Score = 27.8 bits (62), Expect = 4.6
Identities = 11/73 (15%), Positives = 22/73 (30%), Gaps = 17/73 (23%)
Query: 242 IIDEVVQVSSDEAI--ETAKLLAL------KEGLFVGISSGGAAAAAIEIAKRPENA--- 290
+++ + + I E + KE L V G A ++ K +
Sbjct: 44 MLNRQLLFKNFLHIESELLAHMGGCTKKELKEVLIVD---GFDLELAHQLFKYDTHIDFV 100
Query: 291 ---GKLIVVCSQF 300
K++ F
Sbjct: 101 QADEKILDSFISF 113
>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics,
PSI, protein STRU initiative; 2.66A {Mycobacterium
tuberculosis} SCOP: c.2.1.1
Length = 198
Score = 27.5 bits (62), Expect = 4.7
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 66 ITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAE 118
++PGE VLI +G G+G+A ++ AK I A S +R +L G E
Sbjct: 36 LSPGERVLIHSATG--GVGMAAVSIAKMIGARIYTTAG-SDAKREMLSRLGVE 85
>3r0v_A Alpha/beta hydrolase fold protein; structural genomics,
PSI-biology, protein structure initiati alpha/beta
hydrolase; HET: MSE; 1.38A {Sphaerobacter thermophilus}
Length = 262
Score = 27.7 bits (62), Expect = 4.7
Identities = 11/55 (20%), Positives = 18/55 (32%), Gaps = 7/55 (12%)
Query: 260 LLALKEGL-----FVGISSGGAAAAAIEIAKRPENAGKLIVVCSQFACITSDSWL 309
L A+ + G+SSG + A +L V +A S +
Sbjct: 78 LAAIIDAAGGAAFVFGMSSGAGLSL--LAAASGLPITRLAVFEPPYAVDDSRPPV 130
>2r11_A Carboxylesterase NP; 2632844, putative hydrolase, structural
genomics, joint center for structural genomics, JCSG;
HET: MSE PGE; 1.96A {Bacillus subtilis}
Length = 306
Score = 27.7 bits (62), Expect = 4.8
Identities = 6/31 (19%), Positives = 12/31 (38%), Gaps = 1/31 (3%)
Query: 268 FVGISSGGAAAAAIEIAKRPENAGKLIVVCS 298
+G+S GG + + PE ++
Sbjct: 138 MIGLSLGGLHTMNFLL-RMPERVKSAAILSP 167
>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase,
oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A
{Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*
Length = 366
Score = 27.8 bits (62), Expect = 5.2
Identities = 11/91 (12%), Positives = 25/91 (27%), Gaps = 14/91 (15%)
Query: 32 VARIAAKLEMMEPCSSV-----KDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLA 86
+ I + +P + + + + VL+ G IG+
Sbjct: 142 IEDIGI---LAQPLADIEKSIEEILEVQKRVPVWTCDDGTLNCRKVLV---VGTGPIGVL 195
Query: 87 FMAAAKQY---RLIITMPASMSLERRIILRA 114
F + Y + +E+ +I
Sbjct: 196 FTLLFRTYGLEVWMANRREPTEVEQTVIEET 226
>1wd5_A Hypothetical protein TT1426; structural genomics, riken structural
genomics/proteomics initiative, RSGI, unknown function;
HET: MES; 2.00A {Thermus thermophilus} SCOP: c.61.1.1
Length = 208
Score = 27.2 bits (60), Expect = 5.3
Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 174 GRIDALV-SGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESP 214
GR LV G+ TG ++ A + ++ P ++ P SP
Sbjct: 120 GRDVVLVDDGVATGASMEAALSVVFQEGPR-RVVVAVPVASP 160
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like
fold, helix-turn-helix, transcription/DNA complex; 2.65A
{Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A
2phg_A 1vol_A*
Length = 207
Score = 27.3 bits (60), Expect = 6.2
Identities = 8/42 (19%), Positives = 16/42 (38%), Gaps = 3/42 (7%)
Query: 251 SDEAIETAKLL---ALKEGLFVGISSGGAAAAAIEIAKRPEN 289
++ L ++ G ++ A+A + IA R E
Sbjct: 22 PRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEG 63
>3qvm_A OLEI00960; structural genomics, PSI-biology, midwest center for
structu genomics, MCSG, alpha-beta hydrolase fold,
hydrolase; 2.00A {Oleispira antarctica}
Length = 282
Score = 27.2 bits (61), Expect = 6.2
Identities = 6/38 (15%), Positives = 11/38 (28%), Gaps = 1/38 (2%)
Query: 261 LALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVCS 298
L L +G S A + + ++C
Sbjct: 95 LDLVNVSIIGHSVSSIIAGIAST-HVGDRISDITMICP 131
>3c5v_A PME-1, protein phosphatase methylesterase 1; demethylase, PP2A,
alternative splicing, hydrolase, phosphoprotein, serine
esterase; 2.00A {Homo sapiens} PDB: 3c5w_P
Length = 316
Score = 27.5 bits (61), Expect = 6.7
Identities = 8/45 (17%), Positives = 15/45 (33%)
Query: 253 EAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVC 297
+E + +G S GGA A + + L ++
Sbjct: 99 NVVEAMYGDLPPPIMLIGHSMGGAIAVHTASSNLVPSLLGLCMID 143
>1hkh_A Gamma lactamase; hydrolase, alpha/beta hydrolase, CO-factor free
haloperoxidase,; 1.73A {Microbacterium} SCOP: c.69.1.12
PDB: 1hl7_A*
Length = 279
Score = 27.4 bits (61), Expect = 6.8
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 261 LALKEGLFVGISSGGAAAAAIEIAK-RPENAGKLIVVCS 298
L L++ + VG S G A +A+ E KL + S
Sbjct: 87 LDLRDVVLVGFSMGTGELAR-YVARYGHERVAKLAFLAS 124
>3uog_A Alcohol dehydrogenase; structural genomics, protein structure
initiative, PSI-biolo YORK structural genomics research
consortium; 2.20A {Sinorhizobium meliloti 1021}
Length = 363
Score = 27.2 bits (61), Expect = 7.1
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 8/60 (13%)
Query: 63 KGLITPGESVLIEPTSGNTGIGLAFMAAAKQY--RLIITMPASMSLERRIILRAFGAELV 120
KG + G+ V+++ T G+ L + AK +I+T S S E+ A GA+
Sbjct: 184 KGHLRAGDRVVVQGTG---GVALFGLQIAKATGAEVIVT---SSSREKLDRAFALGADHG 237
>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate
aminotransferase; HET: PGU; 1.67A {Thermus thermophilus}
PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*
Length = 397
Score = 27.2 bits (61), Expect = 7.2
Identities = 13/78 (16%), Positives = 22/78 (28%), Gaps = 30/78 (38%)
Query: 62 AKGLITPGESVLIE-PT-------------------SGNTGI---GLAFMAAAKQYRLII 98
K + G VL+E P+ +G G L + ++ R +
Sbjct: 108 GKVFLDEGSPVLLEAPSYMGAIQAFRLQGPRFLTVPAGEEGPDLDALEEVLKRERPRFLY 167
Query: 99 TMP-------ASMSLERR 109
+P L R
Sbjct: 168 LIPSFQNPTGGLTPLPAR 185
>3fob_A Bromoperoxidase; structural genomics, IDP00046, bacillus ANT
peroxidase, oxidoreductase; 1.74A {Bacillus anthracis
str}
Length = 281
Score = 27.0 bits (60), Expect = 7.8
Identities = 9/38 (23%), Positives = 14/38 (36%)
Query: 261 LALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVCS 298
L L+ VG S GG A + K++ +
Sbjct: 91 LELQNVTLVGFSMGGGEVARYISTYGTDRIEKVVFAGA 128
>1a8q_A Bromoperoxidase A1; haloperoxidase, oxidoreductase; 1.75A
{Streptomyces aureofaciens} SCOP: c.69.1.12
Length = 274
Score = 26.9 bits (60), Expect = 8.3
Identities = 7/38 (18%), Positives = 13/38 (34%)
Query: 261 LALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVCS 298
L L++ V S GG A +++ +
Sbjct: 83 LDLRDVTLVAHSMGGGELARYVGRHGTGRLRSAVLLSA 120
>2cnd_A NADH-dependent nitrate reductase; nitrate assimilating enzyme,
oxidoreductase, nitrogenous acceptor; HET: FAD; 2.50A
{Zea mays} SCOP: b.43.4.2 c.25.1.1 PDB: 1cnf_A* 1cne_A*
Length = 270
Score = 27.1 bits (60), Expect = 8.4
Identities = 9/30 (30%), Positives = 11/30 (36%), Gaps = 4/30 (13%)
Query: 152 ENPANPKIHY----ETTGPELWKGSGGRID 177
E P K+ Y E WK S G +
Sbjct: 193 EYPDRLKVWYVIDQVKRPEEGWKYSVGFVT 222
>3hss_A Putative bromoperoxidase; alpha beta hydrolase, oxidoreductase,
hydrolase; 1.90A {Mycobacterium tuberculosis} PDB:
3e3a_A 3hys_A 3hzo_A
Length = 293
Score = 26.9 bits (60), Expect = 9.5
Identities = 8/49 (16%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
Query: 261 LALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVCSQFACITSDSWL 309
L + VG+S G A + + PE +++ ++ + +
Sbjct: 107 LDIAPARVVGVSMGAFIAQEL-MVVAPELVSSAVLMATRGRLDRARQFF 154
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.134 0.383
Gapped
Lambda K H
0.267 0.0713 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,042,143
Number of extensions: 330177
Number of successful extensions: 1091
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1015
Number of HSP's successfully gapped: 92
Length of query: 321
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 227
Effective length of database: 4,077,219
Effective search space: 925528713
Effective search space used: 925528713
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (25.8 bits)