Query 020809
Match_columns 321
No_of_seqs 147 out of 156
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 05:19:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020809.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020809hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11637 AmiB activator; Provi 99.3 1.7E-09 3.8E-14 108.0 26.3 154 39-192 48-253 (428)
2 COG3883 Uncharacterized protei 98.9 8.4E-07 1.8E-11 83.3 25.2 143 46-192 39-217 (265)
3 PRK11637 AmiB activator; Provi 98.6 4.8E-05 1E-09 76.2 27.2 83 41-124 43-125 (428)
4 COG4942 Membrane-bound metallo 98.6 3.4E-05 7.3E-10 76.8 24.2 79 124-202 162-240 (420)
5 COG3883 Uncharacterized protei 98.4 0.0002 4.4E-09 67.4 24.3 153 71-229 36-217 (265)
6 PRK09039 hypothetical protein; 98.3 0.00036 7.8E-09 68.4 24.3 82 3-96 23-104 (343)
7 PF12718 Tropomyosin_1: Tropom 98.3 0.00026 5.7E-09 61.1 20.3 60 42-101 4-63 (143)
8 PF12718 Tropomyosin_1: Tropom 98.1 0.0011 2.4E-08 57.2 20.3 54 47-100 2-55 (143)
9 TIGR02169 SMC_prok_A chromosom 98.1 0.0014 3E-08 72.4 25.2 41 42-82 291-331 (1164)
10 KOG0250 DNA repair protein RAD 98.0 0.0039 8.5E-08 68.0 26.8 102 140-251 390-491 (1074)
11 TIGR02168 SMC_prok_B chromosom 98.0 0.0016 3.4E-08 71.6 24.1 17 293-309 1031-1047(1179)
12 TIGR02168 SMC_prok_B chromosom 98.0 0.0017 3.8E-08 71.3 24.3 54 41-94 673-726 (1179)
13 PF00261 Tropomyosin: Tropomyo 98.0 0.0049 1.1E-07 57.2 23.2 46 44-89 35-80 (237)
14 COG1579 Zn-ribbon protein, pos 98.0 0.0072 1.6E-07 56.4 24.0 17 209-225 171-187 (239)
15 PF00261 Tropomyosin: Tropomyo 97.9 0.0014 3.1E-08 60.8 19.4 53 47-99 3-55 (237)
16 COG1196 Smc Chromosome segrega 97.8 0.033 7.2E-07 62.7 31.2 89 107-195 826-914 (1163)
17 PRK03918 chromosome segregatio 97.7 0.022 4.7E-07 61.7 27.3 38 151-188 666-703 (880)
18 COG1196 Smc Chromosome segrega 97.7 0.01 2.2E-07 66.8 25.2 28 285-312 1000-1027(1163)
19 PHA02562 46 endonuclease subun 97.7 0.0067 1.5E-07 62.3 20.7 25 165-189 358-382 (562)
20 COG4942 Membrane-bound metallo 97.7 0.025 5.4E-07 56.7 23.7 47 146-192 198-244 (420)
21 PF09726 Macoilin: Transmembra 97.6 0.015 3.3E-07 62.0 23.5 105 43-147 458-576 (697)
22 PRK02224 chromosome segregatio 97.6 0.022 4.7E-07 61.9 24.4 30 43-72 473-502 (880)
23 KOG0250 DNA repair protein RAD 97.6 0.033 7.2E-07 61.1 25.2 88 106-193 362-450 (1074)
24 PF07888 CALCOCO1: Calcium bin 97.6 0.053 1.2E-06 56.0 25.3 95 42-136 140-240 (546)
25 COG1579 Zn-ribbon protein, pos 97.6 0.024 5.3E-07 52.9 20.8 113 43-155 29-142 (239)
26 TIGR00606 rad50 rad50. This fa 97.5 0.18 3.9E-06 57.6 31.4 59 210-269 1048-1106(1311)
27 PRK09039 hypothetical protein; 97.5 0.06 1.3E-06 52.8 23.7 141 43-184 44-184 (343)
28 PRK04778 septation ring format 97.5 0.083 1.8E-06 55.1 26.1 124 118-241 350-475 (569)
29 PHA02562 46 endonuclease subun 97.4 0.05 1.1E-06 55.9 23.7 38 157-194 336-373 (562)
30 PRK03918 chromosome segregatio 97.4 0.04 8.6E-07 59.7 23.3 39 141-179 663-701 (880)
31 KOG0996 Structural maintenance 97.4 0.091 2E-06 58.2 25.4 167 55-226 408-591 (1293)
32 TIGR00606 rad50 rad50. This fa 97.4 0.12 2.5E-06 59.1 27.2 57 86-142 798-862 (1311)
33 KOG0994 Extracellular matrix g 97.3 0.16 3.4E-06 56.3 26.2 159 39-198 1543-1701(1758)
34 KOG0161 Myosin class II heavy 97.3 0.077 1.7E-06 62.0 24.5 57 125-181 1057-1113(1930)
35 PRK04863 mukB cell division pr 97.3 0.31 6.6E-06 56.3 29.0 38 44-81 292-329 (1486)
36 COG4372 Uncharacterized protei 97.2 0.13 2.9E-06 50.9 22.5 28 164-191 251-278 (499)
37 PF12128 DUF3584: Protein of u 97.1 0.28 6.1E-06 55.6 26.9 98 39-136 601-705 (1201)
38 PF04156 IncA: IncA protein; 97.1 0.15 3.3E-06 45.2 19.7 16 117-132 131-146 (191)
39 PF07888 CALCOCO1: Calcium bin 97.0 0.26 5.7E-06 51.1 23.2 50 50-99 141-190 (546)
40 TIGR01843 type_I_hlyD type I s 97.0 0.41 9E-06 46.9 27.6 27 39-65 75-101 (423)
41 PF05667 DUF812: Protein of un 96.9 0.2 4.4E-06 52.6 22.1 58 42-99 325-382 (594)
42 KOG0996 Structural maintenance 96.9 0.2 4.2E-06 55.6 22.2 48 50-97 375-422 (1293)
43 PRK01156 chromosome segregatio 96.9 0.45 9.8E-06 52.0 25.6 32 151-182 688-719 (895)
44 PF00038 Filament: Intermediat 96.9 0.12 2.6E-06 49.3 18.6 34 156-189 267-300 (312)
45 PRK04863 mukB cell division pr 96.9 0.41 8.8E-06 55.3 25.5 36 44-79 299-334 (1486)
46 PF08317 Spc7: Spc7 kinetochor 96.8 0.31 6.7E-06 47.4 21.1 54 125-178 211-264 (325)
47 KOG0933 Structural maintenance 96.8 1.1 2.5E-05 49.2 27.0 173 24-202 652-831 (1174)
48 PRK04778 septation ring format 96.8 0.26 5.6E-06 51.5 21.3 141 45-185 282-431 (569)
49 PF09726 Macoilin: Transmembra 96.8 0.54 1.2E-05 50.4 23.8 98 41-139 421-518 (697)
50 PF05667 DUF812: Protein of un 96.7 0.43 9.4E-06 50.2 22.5 58 44-101 320-377 (594)
51 KOG0964 Structural maintenance 96.7 1 2.3E-05 49.4 24.9 65 170-234 402-478 (1200)
52 PF12128 DUF3584: Protein of u 96.6 0.69 1.5E-05 52.5 24.7 96 43-139 598-701 (1201)
53 PF00038 Filament: Intermediat 96.6 0.7 1.5E-05 44.0 25.1 58 43-100 52-109 (312)
54 TIGR01843 type_I_hlyD type I s 96.6 0.85 1.8E-05 44.7 22.6 20 39-58 82-101 (423)
55 PF10174 Cast: RIM-binding pro 96.5 0.75 1.6E-05 49.8 22.8 32 57-88 341-372 (775)
56 PF08614 ATG16: Autophagy prot 96.5 0.076 1.6E-06 47.8 13.2 101 41-149 70-170 (194)
57 PRK11281 hypothetical protein; 96.4 0.6 1.3E-05 52.5 22.4 21 170-190 232-252 (1113)
58 PF10473 CENP-F_leu_zip: Leuci 96.4 0.54 1.2E-05 40.6 19.5 52 45-96 10-61 (140)
59 PF13851 GAS: Growth-arrest sp 96.4 0.74 1.6E-05 41.9 22.3 100 43-154 32-131 (201)
60 PF09304 Cortex-I_coil: Cortex 96.4 0.43 9.4E-06 39.2 15.7 55 108-162 50-104 (107)
61 PF15070 GOLGA2L5: Putative go 96.3 0.23 4.9E-06 52.5 17.6 124 49-172 19-143 (617)
62 COG1340 Uncharacterized archae 96.3 1.1 2.4E-05 43.2 23.7 58 40-97 43-100 (294)
63 PRK01156 chromosome segregatio 96.3 1.3 2.8E-05 48.5 23.9 61 39-99 160-223 (895)
64 PF09730 BicD: Microtubule-ass 96.3 1.4 3E-05 47.3 23.3 146 45-190 265-437 (717)
65 KOG1029 Endocytic adaptor prot 96.3 0.87 1.9E-05 48.9 21.1 62 41-102 440-501 (1118)
66 PF05701 WEMBL: Weak chloropla 96.3 1.6 3.6E-05 45.2 23.3 23 39-61 212-234 (522)
67 PF08317 Spc7: Spc7 kinetochor 96.3 0.91 2E-05 44.1 20.2 47 55-101 152-198 (325)
68 PF04156 IncA: IncA protein; 96.2 0.51 1.1E-05 41.9 17.1 19 72-90 101-119 (191)
69 KOG4674 Uncharacterized conser 96.2 1 2.3E-05 52.4 22.8 54 45-98 1236-1289(1822)
70 COG1340 Uncharacterized archae 96.1 1.4 3E-05 42.5 23.3 43 156-198 163-205 (294)
71 PF14662 CCDC155: Coiled-coil 96.1 1 2.2E-05 40.8 21.6 35 152-186 152-186 (193)
72 PF11932 DUF3450: Protein of u 96.1 0.075 1.6E-06 49.6 11.5 57 43-99 40-96 (251)
73 PF12795 MscS_porin: Mechanose 96.1 0.69 1.5E-05 42.9 17.7 133 37-169 77-210 (240)
74 KOG0933 Structural maintenance 96.1 3.1 6.7E-05 46.0 30.3 14 243-256 927-940 (1174)
75 PF07926 TPR_MLP1_2: TPR/MLP1/ 96.1 0.76 1.6E-05 38.9 19.8 52 112-166 69-120 (132)
76 COG4372 Uncharacterized protei 96.1 1.8 3.9E-05 43.1 27.8 33 120-152 183-215 (499)
77 PF08614 ATG16: Autophagy prot 96.0 0.18 3.9E-06 45.4 13.2 60 40-99 76-135 (194)
78 KOG0976 Rho/Rac1-interacting s 96.0 3.1 6.7E-05 45.1 27.4 19 236-254 414-432 (1265)
79 KOG1029 Endocytic adaptor prot 96.0 0.66 1.4E-05 49.8 18.5 56 45-100 409-464 (1118)
80 PF05701 WEMBL: Weak chloropla 96.0 1.5 3.3E-05 45.4 21.2 133 58-191 280-426 (522)
81 TIGR03007 pepcterm_ChnLen poly 95.9 2.3 5E-05 43.2 22.8 57 44-100 167-231 (498)
82 PF15619 Lebercilin: Ciliary p 95.9 1.3 2.8E-05 40.2 24.4 133 45-184 12-151 (194)
83 KOG0963 Transcription factor/C 95.9 1.8 3.9E-05 45.4 21.1 87 111-197 244-342 (629)
84 TIGR01005 eps_transp_fam exopo 95.9 1.5 3.4E-05 47.0 21.8 71 121-191 321-395 (754)
85 KOG0978 E3 ubiquitin ligase in 95.8 3.4 7.4E-05 44.2 25.0 101 121-224 543-643 (698)
86 TIGR03185 DNA_S_dndD DNA sulfu 95.8 3 6.4E-05 44.3 23.0 46 42-87 206-251 (650)
87 KOG0964 Structural maintenance 95.8 2.1 4.6E-05 47.1 21.5 72 125-196 420-498 (1200)
88 PF12329 TMF_DNA_bd: TATA elem 95.7 0.21 4.6E-06 38.3 10.5 65 64-129 3-67 (74)
89 PF15070 GOLGA2L5: Putative go 95.6 3.3 7.1E-05 43.9 22.2 93 42-139 84-183 (617)
90 KOG4643 Uncharacterized coiled 95.6 1.3 2.7E-05 48.8 19.2 141 39-179 171-329 (1195)
91 PF06160 EzrA: Septation ring 95.6 3.7 8E-05 42.9 24.2 166 121-298 349-528 (560)
92 PF06008 Laminin_I: Laminin Do 95.5 2.2 4.8E-05 40.0 22.0 144 47-193 19-167 (264)
93 PF12329 TMF_DNA_bd: TATA elem 95.4 0.25 5.5E-06 37.9 9.9 71 77-148 2-72 (74)
94 PF10473 CENP-F_leu_zip: Leuci 95.3 1.7 3.6E-05 37.6 20.2 99 81-180 18-116 (140)
95 TIGR03007 pepcterm_ChnLen poly 95.2 3.9 8.4E-05 41.6 21.0 57 40-96 170-234 (498)
96 PF05911 DUF869: Plant protein 95.2 3.6 7.9E-05 44.7 21.3 58 44-101 588-645 (769)
97 PF04111 APG6: Autophagy prote 95.2 0.61 1.3E-05 45.3 14.2 68 124-191 65-132 (314)
98 TIGR03185 DNA_S_dndD DNA sulfu 95.0 2.7 5.9E-05 44.5 19.8 74 59-133 391-466 (650)
99 KOG4673 Transcription factor T 95.0 6 0.00013 42.3 21.3 84 40-124 404-503 (961)
100 PF04111 APG6: Autophagy prote 95.0 0.73 1.6E-05 44.7 14.2 51 134-184 61-111 (314)
101 PF12795 MscS_porin: Mechanose 95.0 3 6.5E-05 38.6 22.3 25 167-191 187-211 (240)
102 KOG4674 Uncharacterized conser 95.0 6.9 0.00015 46.0 23.6 69 55-124 1232-1300(1822)
103 TIGR01000 bacteriocin_acc bact 95.0 4.7 0.0001 40.8 23.1 32 39-70 91-122 (457)
104 KOG0979 Structural maintenance 94.9 7.7 0.00017 43.0 26.3 110 36-146 172-292 (1072)
105 PF05622 HOOK: HOOK protein; 94.9 0.0071 1.5E-07 64.6 0.0 106 39-144 240-353 (713)
106 KOG0971 Microtubule-associated 94.9 6.9 0.00015 43.0 21.8 15 177-191 460-474 (1243)
107 PRK10929 putative mechanosensi 94.8 9 0.00019 43.4 23.8 29 108-136 207-235 (1109)
108 PF05911 DUF869: Plant protein 94.8 3.4 7.4E-05 44.9 19.8 78 117-194 639-716 (769)
109 PRK11281 hypothetical protein; 94.8 2.1 4.6E-05 48.3 18.7 18 41-58 90-107 (1113)
110 COG1382 GimC Prefoldin, chaper 94.8 2 4.4E-05 36.0 14.2 94 46-139 7-107 (119)
111 PRK10884 SH3 domain-containing 94.7 0.68 1.5E-05 42.4 12.4 22 51-72 92-113 (206)
112 PF11559 ADIP: Afadin- and alp 94.7 2.5 5.4E-05 36.2 16.8 95 41-136 34-128 (151)
113 TIGR01000 bacteriocin_acc bact 94.7 4.9 0.00011 40.7 19.8 26 39-64 98-123 (457)
114 KOG0977 Nuclear envelope prote 94.6 6.7 0.00014 41.0 22.5 87 42-136 96-182 (546)
115 KOG0976 Rho/Rac1-interacting s 94.6 6.3 0.00014 42.8 20.6 55 75-129 381-444 (1265)
116 KOG0995 Centromere-associated 94.6 6.7 0.00014 41.0 22.5 14 153-166 348-361 (581)
117 KOG0977 Nuclear envelope prote 94.6 5.6 0.00012 41.5 20.0 46 41-86 31-76 (546)
118 KOG0018 Structural maintenance 94.6 7 0.00015 43.6 21.5 34 256-289 981-1014(1141)
119 KOG0994 Extracellular matrix g 94.6 10 0.00022 42.9 23.5 52 151-202 1570-1621(1758)
120 PRK10884 SH3 domain-containing 94.6 0.96 2.1E-05 41.4 13.0 48 144-191 118-165 (206)
121 KOG0612 Rho-associated, coiled 94.5 10 0.00023 42.8 26.7 37 66-102 494-530 (1317)
122 PF04849 HAP1_N: HAP1 N-termin 94.5 5 0.00011 38.9 19.1 125 39-181 154-278 (306)
123 TIGR02977 phageshock_pspA phag 94.5 3.9 8.4E-05 37.5 23.2 46 42-87 28-73 (219)
124 KOG0018 Structural maintenance 94.5 10 0.00022 42.3 25.3 34 280-313 979-1012(1141)
125 PF04012 PspA_IM30: PspA/IM30 94.5 3.7 8.1E-05 37.3 21.7 47 42-88 27-73 (221)
126 KOG0612 Rho-associated, coiled 94.4 9.8 0.00021 43.0 22.2 84 66-150 465-549 (1317)
127 KOG0804 Cytoplasmic Zn-finger 94.4 4.4 9.6E-05 41.1 18.1 75 48-129 328-402 (493)
128 TIGR02680 conserved hypothetic 94.3 10 0.00023 43.8 23.3 21 46-66 231-251 (1353)
129 PRK09343 prefoldin subunit bet 94.3 2.8 6E-05 35.1 14.2 44 43-86 5-48 (121)
130 KOG0980 Actin-binding protein 94.2 10 0.00023 41.5 23.8 55 140-194 462-516 (980)
131 PF09304 Cortex-I_coil: Cortex 94.2 2.7 5.8E-05 34.6 14.3 69 108-176 8-76 (107)
132 PRK10698 phage shock protein P 94.2 4.6 0.0001 37.3 23.0 44 43-86 29-72 (222)
133 smart00787 Spc7 Spc7 kinetocho 94.2 6 0.00013 38.5 21.2 39 153-191 220-258 (312)
134 PF10186 Atg14: UV radiation r 94.1 5.1 0.00011 37.4 18.8 17 47-63 22-38 (302)
135 PF15450 DUF4631: Domain of un 94.0 8.6 0.00019 39.8 20.7 95 45-139 337-435 (531)
136 PF15619 Lebercilin: Ciliary p 94.0 4.7 0.0001 36.6 22.0 25 169-193 122-146 (194)
137 TIGR02680 conserved hypothetic 93.8 12 0.00026 43.3 22.6 24 39-62 231-254 (1353)
138 PF04849 HAP1_N: HAP1 N-termin 93.8 6.9 0.00015 38.0 21.6 61 36-99 158-218 (306)
139 PF15397 DUF4618: Domain of un 93.8 6.3 0.00014 37.4 21.9 39 158-196 186-224 (258)
140 TIGR03017 EpsF chain length de 93.8 8 0.00017 38.6 21.4 24 54-77 173-196 (444)
141 PF12325 TMF_TATA_bd: TATA ele 93.8 3.6 7.8E-05 34.6 15.6 16 47-62 18-33 (120)
142 PF04582 Reo_sigmaC: Reovirus 93.7 0.15 3.3E-06 49.5 6.2 44 107-150 110-153 (326)
143 PF10168 Nup88: Nuclear pore c 93.6 3.9 8.4E-05 44.2 17.2 12 109-120 607-618 (717)
144 KOG0978 E3 ubiquitin ligase in 93.6 5.1 0.00011 42.9 17.7 122 54-176 498-619 (698)
145 PF14362 DUF4407: Domain of un 93.6 6.7 0.00014 37.4 17.3 15 206-220 259-273 (301)
146 PRK03947 prefoldin subunit alp 93.4 3.9 8.4E-05 34.6 13.7 45 106-150 91-135 (140)
147 KOG0995 Centromere-associated 93.3 12 0.00026 39.2 32.0 28 72-99 293-320 (581)
148 PF04012 PspA_IM30: PspA/IM30 93.3 6.2 0.00013 35.8 18.5 52 48-99 26-77 (221)
149 KOG0980 Actin-binding protein 93.3 15 0.00033 40.3 28.3 31 228-258 613-645 (980)
150 PF06818 Fez1: Fez1; InterPro 93.3 6.5 0.00014 36.0 18.1 17 118-134 89-105 (202)
151 PF10186 Atg14: UV radiation r 93.3 7.1 0.00015 36.4 21.0 10 49-58 31-40 (302)
152 PRK10929 putative mechanosensi 93.2 18 0.0004 41.0 22.7 29 163-191 206-234 (1109)
153 PF04582 Reo_sigmaC: Reovirus 93.1 0.21 4.6E-06 48.6 6.2 42 143-184 111-152 (326)
154 PF12777 MT: Microtubule-bindi 93.1 9.4 0.0002 37.4 22.6 58 210-269 285-343 (344)
155 PF12325 TMF_TATA_bd: TATA ele 93.1 4.8 0.0001 33.8 15.7 34 65-98 22-55 (120)
156 PF01576 Myosin_tail_1: Myosin 93.0 0.028 6E-07 61.5 0.0 40 62-101 134-173 (859)
157 KOG1853 LIS1-interacting prote 92.8 9.1 0.0002 36.3 21.1 127 43-176 25-158 (333)
158 COG1842 PspA Phage shock prote 92.7 8.5 0.00018 35.7 22.1 37 43-79 29-65 (225)
159 PF05335 DUF745: Protein of un 92.6 7.7 0.00017 35.1 16.6 94 43-136 65-171 (188)
160 PF09730 BicD: Microtubule-ass 92.4 18 0.0004 39.1 20.9 61 41-101 30-90 (717)
161 PF14662 CCDC155: Coiled-coil 92.4 8.4 0.00018 35.0 25.5 51 106-156 78-128 (193)
162 COG2433 Uncharacterized conser 92.3 3.6 7.8E-05 43.2 14.0 29 118-146 476-504 (652)
163 COG1730 GIM5 Predicted prefold 92.3 7.1 0.00015 33.9 14.4 44 105-148 90-133 (145)
164 PF13514 AAA_27: AAA domain 92.3 24 0.00052 39.9 23.5 32 145-176 897-928 (1111)
165 PRK10803 tol-pal system protei 92.2 1.9 4E-05 40.8 11.2 51 51-101 39-89 (263)
166 KOG0946 ER-Golgi vesicle-tethe 92.2 21 0.00044 39.1 23.6 55 167-223 801-855 (970)
167 KOG1853 LIS1-interacting prote 92.2 8.2 0.00018 36.6 14.9 79 105-186 48-126 (333)
168 KOG0979 Structural maintenance 92.1 23 0.0005 39.4 20.3 37 65-101 180-216 (1072)
169 TIGR02338 gimC_beta prefoldin, 92.0 5.9 0.00013 32.3 13.0 34 49-82 7-40 (110)
170 KOG0963 Transcription factor/C 91.9 19 0.00042 38.0 20.0 57 89-145 169-225 (629)
171 PF07926 TPR_MLP1_2: TPR/MLP1/ 91.8 7 0.00015 32.9 19.7 22 159-180 99-120 (132)
172 PF13166 AAA_13: AAA domain 91.8 20 0.00043 38.1 19.6 18 228-245 565-582 (712)
173 TIGR03017 EpsF chain length de 91.7 15 0.00033 36.6 19.6 19 45-63 215-233 (444)
174 PF10481 CENP-F_N: Cenp-F N-te 91.5 13 0.00029 35.5 18.9 76 117-199 61-136 (307)
175 PF07106 TBPIP: Tat binding pr 91.4 1.7 3.6E-05 38.1 9.4 63 39-101 73-137 (169)
176 PF00769 ERM: Ezrin/radixin/mo 91.4 13 0.00027 34.9 18.6 115 58-187 4-118 (246)
177 PF14282 FlxA: FlxA-like prote 91.2 2.3 4.9E-05 34.8 9.3 58 42-99 16-77 (106)
178 KOG0971 Microtubule-associated 91.2 28 0.00061 38.6 27.3 39 62-100 399-437 (1243)
179 PF09403 FadA: Adhesion protei 91.1 8.7 0.00019 32.6 13.8 59 41-99 23-81 (126)
180 COG5185 HEC1 Protein involved 91.1 20 0.00044 36.8 17.8 51 49-99 268-321 (622)
181 cd00632 Prefoldin_beta Prefold 90.9 7.3 0.00016 31.4 13.1 19 46-64 7-25 (105)
182 PRK03947 prefoldin subunit alp 90.9 8.9 0.00019 32.4 13.8 39 44-82 5-43 (140)
183 PF13870 DUF4201: Domain of un 90.7 11 0.00024 33.1 22.4 29 202-230 131-159 (177)
184 cd00632 Prefoldin_beta Prefold 90.7 5.6 0.00012 32.1 11.1 37 50-86 4-40 (105)
185 PF04728 LPP: Lipoprotein leuc 90.7 2.5 5.4E-05 30.9 7.9 45 74-119 4-48 (56)
186 PF06160 EzrA: Septation ring 90.6 24 0.00053 36.9 27.8 38 246-283 351-390 (560)
187 COG2433 Uncharacterized conser 90.6 8.7 0.00019 40.5 14.7 80 106-185 426-508 (652)
188 PF03962 Mnd1: Mnd1 family; I 90.5 9.8 0.00021 34.2 13.6 62 70-133 66-127 (188)
189 PF07106 TBPIP: Tat binding pr 90.4 2.2 4.8E-05 37.3 9.1 28 72-99 78-105 (169)
190 PF06008 Laminin_I: Laminin Do 90.1 17 0.00036 34.1 23.2 31 161-191 181-211 (264)
191 PF05384 DegS: Sensor protein 89.9 13 0.00028 32.7 21.6 51 51-101 5-55 (159)
192 PRK15396 murein lipoprotein; P 89.8 2.8 6E-05 32.7 8.1 13 1-13 1-13 (78)
193 KOG4360 Uncharacterized coiled 89.7 28 0.0006 36.2 17.7 18 203-220 314-332 (596)
194 PF08172 CASP_C: CASP C termin 89.6 7.5 0.00016 36.6 12.4 54 107-160 84-137 (248)
195 PF02403 Seryl_tRNA_N: Seryl-t 89.5 4.2 9.1E-05 32.8 9.5 71 61-136 24-94 (108)
196 PF04102 SlyX: SlyX; InterPro 89.5 2.5 5.5E-05 31.8 7.6 51 142-192 2-52 (69)
197 PF10498 IFT57: Intra-flagella 89.5 17 0.00036 36.2 15.3 101 72-176 219-319 (359)
198 PF03148 Tektin: Tektin family 89.4 24 0.00053 35.1 17.3 54 66-120 251-304 (384)
199 KOG1899 LAR transmembrane tyro 89.4 18 0.00039 38.5 15.8 110 38-157 104-215 (861)
200 PRK04406 hypothetical protein; 89.3 4.3 9.4E-05 31.3 8.8 51 140-190 7-57 (75)
201 COG1842 PspA Phage shock prote 89.2 19 0.0004 33.5 20.0 47 55-101 27-73 (225)
202 PF02994 Transposase_22: L1 tr 89.2 1.5 3.3E-05 43.5 7.9 11 88-98 106-116 (370)
203 PF10481 CENP-F_N: Cenp-F N-te 89.2 21 0.00046 34.2 16.0 48 52-99 18-65 (307)
204 PF13166 AAA_13: AAA domain 89.1 34 0.00073 36.3 24.5 14 84-97 326-339 (712)
205 PRK09841 cryptic autophosphory 89.1 29 0.00062 37.5 18.1 47 141-191 343-389 (726)
206 PF05335 DUF745: Protein of un 89.0 17 0.00037 32.8 18.2 106 68-181 62-167 (188)
207 TIGR00634 recN DNA repair prot 88.9 32 0.0007 35.9 19.3 43 43-85 159-201 (563)
208 COG0419 SbcC ATPase involved i 88.9 42 0.00091 37.1 24.2 75 117-191 362-436 (908)
209 PRK02119 hypothetical protein; 88.8 2.9 6.3E-05 32.0 7.5 51 48-98 5-55 (73)
210 KOG4643 Uncharacterized coiled 88.8 45 0.00098 37.4 23.2 12 67-78 416-427 (1195)
211 PF06810 Phage_GP20: Phage min 88.8 9 0.0002 33.4 11.6 48 50-97 18-68 (155)
212 PRK04406 hypothetical protein; 88.8 3.6 7.9E-05 31.7 8.1 51 49-99 8-58 (75)
213 PF10368 YkyA: Putative cell-w 88.7 13 0.00029 33.9 13.1 70 109-178 119-191 (204)
214 PF08826 DMPK_coil: DMPK coile 88.7 8 0.00017 28.7 10.0 44 92-136 16-59 (61)
215 KOG4673 Transcription factor T 88.7 39 0.00084 36.5 23.8 45 57-101 465-509 (961)
216 PRK02119 hypothetical protein; 88.6 4.1 8.8E-05 31.2 8.2 52 140-191 5-56 (73)
217 KOG2129 Uncharacterized conser 88.5 30 0.00066 35.1 18.3 19 41-59 132-150 (552)
218 PRK02793 phi X174 lysis protei 88.5 4.4 9.6E-05 30.9 8.3 51 141-191 5-55 (72)
219 KOG1899 LAR transmembrane tyro 88.3 34 0.00074 36.5 16.9 83 45-128 132-214 (861)
220 PF04912 Dynamitin: Dynamitin 88.2 29 0.00063 34.5 18.6 18 44-61 208-225 (388)
221 PRK00295 hypothetical protein; 88.2 4.9 0.00011 30.3 8.3 50 142-191 3-52 (68)
222 PRK00736 hypothetical protein; 88.1 4.2 9E-05 30.7 7.9 50 142-191 3-52 (68)
223 PF07889 DUF1664: Protein of u 88.0 11 0.00023 32.0 11.1 56 42-100 47-102 (126)
224 PRK04325 hypothetical protein; 88.0 5.2 0.00011 30.7 8.4 51 141-191 6-56 (74)
225 PF04102 SlyX: SlyX; InterPro 87.7 3 6.6E-05 31.4 7.0 48 45-99 4-51 (69)
226 KOG0804 Cytoplasmic Zn-finger 87.6 36 0.00078 34.8 17.7 63 73-136 339-402 (493)
227 PRK04325 hypothetical protein; 87.5 4.1 8.8E-05 31.3 7.6 48 52-99 9-56 (74)
228 COG5185 HEC1 Protein involved 87.4 38 0.00083 35.0 21.6 15 85-99 293-307 (622)
229 PF10212 TTKRSYEDQ: Predicted 87.3 19 0.00041 37.4 14.4 21 142-162 485-505 (518)
230 KOG4809 Rab6 GTPase-interactin 87.2 42 0.0009 35.2 18.4 77 43-120 336-412 (654)
231 COG3206 GumC Uncharacterized p 87.2 30 0.00066 34.9 16.0 61 39-99 240-304 (458)
232 PF10267 Tmemb_cc2: Predicted 87.1 36 0.00078 34.3 16.1 41 124-164 277-318 (395)
233 PF14197 Cep57_CLD_2: Centroso 87.0 11 0.00025 28.5 9.8 23 111-133 42-64 (69)
234 PF05384 DegS: Sensor protein 87.0 21 0.00045 31.5 19.6 33 44-76 26-58 (159)
235 PF12072 DUF3552: Domain of un 86.6 24 0.00052 31.9 15.1 106 44-149 77-189 (201)
236 KOG2991 Splicing regulator [RN 86.4 31 0.00067 32.9 19.3 66 125-190 238-303 (330)
237 PF05010 TACC: Transforming ac 86.4 27 0.00058 32.1 23.7 34 167-200 156-189 (207)
238 PF10146 zf-C4H2: Zinc finger- 86.4 28 0.00062 32.4 16.0 36 163-198 65-100 (230)
239 PF00769 ERM: Ezrin/radixin/mo 86.2 30 0.00064 32.4 17.9 14 270-283 187-200 (246)
240 PF09755 DUF2046: Uncharacteri 86.0 36 0.00077 33.2 26.0 17 48-64 23-39 (310)
241 PRK00846 hypothetical protein; 86.0 7.4 0.00016 30.2 8.3 52 140-191 9-60 (77)
242 COG1729 Uncharacterized protei 85.9 3.9 8.4E-05 38.9 8.1 18 47-64 58-75 (262)
243 PF05010 TACC: Transforming ac 85.8 28 0.00062 31.9 23.8 32 106-137 87-118 (207)
244 PF14282 FlxA: FlxA-like prote 85.6 3.6 7.8E-05 33.6 6.9 20 52-71 19-38 (106)
245 PF13851 GAS: Growth-arrest sp 85.6 28 0.00061 31.6 22.0 38 121-158 91-128 (201)
246 PRK09841 cryptic autophosphory 85.3 44 0.00095 36.1 16.9 37 50-86 258-294 (726)
247 KOG0962 DNA repair protein RAD 85.3 76 0.0016 36.6 18.8 50 48-97 219-268 (1294)
248 PF05483 SCP-1: Synaptonemal c 85.2 59 0.0013 35.0 24.1 58 44-101 210-268 (786)
249 PRK11519 tyrosine kinase; Prov 85.2 59 0.0013 35.0 18.7 45 142-190 344-388 (719)
250 cd00584 Prefoldin_alpha Prefol 85.2 20 0.00044 29.6 11.7 42 105-146 83-124 (129)
251 KOG4360 Uncharacterized coiled 85.1 52 0.0011 34.3 20.0 14 47-60 161-174 (596)
252 PRK10476 multidrug resistance 85.0 38 0.00083 32.7 16.7 30 39-68 80-109 (346)
253 PF09789 DUF2353: Uncharacteri 85.0 41 0.00088 33.0 19.0 31 286-316 275-307 (319)
254 PF11570 E2R135: Coiled-coil r 84.9 24 0.00051 30.2 13.8 45 40-84 10-54 (136)
255 TIGR02338 gimC_beta prefoldin, 84.8 20 0.00043 29.2 12.6 28 48-75 13-40 (110)
256 PF10211 Ax_dynein_light: Axon 84.7 29 0.00064 31.2 13.5 18 78-95 132-149 (189)
257 TIGR02231 conserved hypothetic 84.7 15 0.00033 37.8 12.7 31 71-101 69-99 (525)
258 COG3206 GumC Uncharacterized p 84.7 48 0.001 33.5 19.3 143 44-191 238-392 (458)
259 PRK00846 hypothetical protein; 84.6 7.4 0.00016 30.2 7.8 50 50-99 11-60 (77)
260 PF15450 DUF4631: Domain of un 84.5 55 0.0012 34.1 19.5 92 113-204 380-473 (531)
261 PRK02793 phi X174 lysis protei 84.3 8.1 0.00017 29.5 7.8 48 44-98 7-54 (72)
262 PF05622 HOOK: HOOK protein; 84.3 0.31 6.7E-06 52.2 0.0 39 39-77 187-225 (713)
263 PF10267 Tmemb_cc2: Predicted 84.2 31 0.00066 34.8 14.0 47 125-171 271-318 (395)
264 PF06810 Phage_GP20: Phage min 83.9 9.9 0.00021 33.2 9.3 33 54-86 15-47 (155)
265 PRK10361 DNA recombination pro 83.9 56 0.0012 33.7 24.0 143 66-215 60-211 (475)
266 TIGR00293 prefoldin, archaeal 83.7 23 0.0005 29.2 11.6 41 105-145 82-122 (126)
267 PF05557 MAD: Mitotic checkpoi 83.7 1.4 3.1E-05 47.3 4.7 14 289-302 630-643 (722)
268 PF09755 DUF2046: Uncharacteri 83.5 46 0.001 32.4 24.5 37 41-77 23-59 (310)
269 PRK00295 hypothetical protein; 83.5 8.9 0.00019 28.9 7.7 48 44-98 4-51 (68)
270 COG1730 GIM5 Predicted prefold 83.5 29 0.00063 30.1 13.1 12 125-136 96-107 (145)
271 PHA03332 membrane glycoprotein 83.2 57 0.0012 36.8 16.2 22 219-242 1011-1032(1328)
272 PRK00736 hypothetical protein; 83.0 8.5 0.00018 29.0 7.4 48 44-98 4-51 (68)
273 PRK10780 periplasmic chaperone 82.8 31 0.00068 30.0 14.6 19 46-64 37-55 (165)
274 PF10146 zf-C4H2: Zinc finger- 82.5 42 0.00092 31.3 16.0 11 50-60 6-16 (230)
275 KOG0243 Kinesin-like protein [ 82.5 92 0.002 35.2 27.6 68 68-136 443-510 (1041)
276 PRK00409 recombination and DNA 82.4 51 0.0011 36.1 15.9 40 60-99 521-560 (782)
277 TIGR03545 conserved hypothetic 82.3 36 0.00079 35.8 14.2 14 227-240 298-311 (555)
278 PF10211 Ax_dynein_light: Axon 82.2 35 0.00075 30.7 12.4 21 79-99 126-146 (189)
279 PF06120 Phage_HK97_TLTM: Tail 82.1 52 0.0011 32.0 20.0 55 45-99 41-100 (301)
280 TIGR02231 conserved hypothetic 82.1 22 0.00047 36.7 12.5 28 72-99 77-104 (525)
281 PRK06975 bifunctional uroporph 81.9 78 0.0017 33.9 17.0 68 43-114 344-411 (656)
282 PF15066 CAGE1: Cancer-associa 81.8 67 0.0015 33.1 18.6 14 20-33 262-275 (527)
283 PF05266 DUF724: Protein of un 81.7 40 0.00087 30.5 13.7 37 63-99 107-143 (190)
284 TIGR01010 BexC_CtrB_KpsE polys 81.7 54 0.0012 31.9 15.3 20 172-191 278-297 (362)
285 KOG2264 Exostosin EXT1L [Signa 81.6 6.1 0.00013 41.4 8.0 13 207-219 209-221 (907)
286 PF09728 Taxilin: Myosin-like 81.3 55 0.0012 31.8 22.6 97 95-192 203-306 (309)
287 PRK11546 zraP zinc resistance 81.3 20 0.00043 31.1 10.0 20 117-136 90-109 (143)
288 KOG0288 WD40 repeat protein Ti 81.2 66 0.0014 32.7 17.6 50 45-94 13-62 (459)
289 PF09789 DUF2353: Uncharacteri 81.2 57 0.0012 31.9 21.3 70 124-193 141-224 (319)
290 COG2900 SlyX Uncharacterized p 81.2 15 0.00033 28.1 8.1 52 140-191 4-55 (72)
291 PRK13729 conjugal transfer pil 81.1 21 0.00046 36.7 11.6 12 120-131 108-119 (475)
292 TIGR02977 phageshock_pspA phag 81.0 44 0.00096 30.5 19.0 48 49-96 28-75 (219)
293 KOG3091 Nuclear pore complex, 80.9 73 0.0016 33.0 16.1 78 25-102 321-405 (508)
294 PF06005 DUF904: Protein of un 80.7 23 0.0005 27.1 11.3 25 75-99 6-30 (72)
295 KOG0244 Kinesin-like protein [ 80.6 70 0.0015 35.5 15.8 11 244-254 651-661 (913)
296 KOG1003 Actin filament-coating 80.5 46 0.001 30.4 23.8 57 43-99 9-65 (205)
297 PF06120 Phage_HK97_TLTM: Tail 80.5 59 0.0013 31.6 18.2 57 41-99 51-107 (301)
298 KOG4809 Rab6 GTPase-interactin 80.5 81 0.0017 33.2 24.4 45 39-83 237-281 (654)
299 PF02994 Transposase_22: L1 tr 80.4 5.7 0.00012 39.5 7.2 83 68-150 100-185 (370)
300 TIGR00414 serS seryl-tRNA synt 80.3 21 0.00044 36.1 11.3 68 65-136 29-96 (418)
301 PF10779 XhlA: Haemolysin XhlA 80.2 10 0.00022 28.5 7.1 44 49-92 3-46 (71)
302 PF05483 SCP-1: Synaptonemal c 80.2 92 0.002 33.7 23.3 11 259-269 677-687 (786)
303 PF14197 Cep57_CLD_2: Centroso 80.2 23 0.0005 26.8 9.1 59 43-101 3-61 (69)
304 PF11180 DUF2968: Protein of u 80.1 47 0.001 30.2 12.4 84 41-132 101-184 (192)
305 PF06818 Fez1: Fez1; InterPro 79.9 49 0.0011 30.3 20.1 12 125-136 89-100 (202)
306 PF15294 Leu_zip: Leucine zipp 79.8 60 0.0013 31.2 15.0 22 158-179 253-274 (278)
307 PRK10869 recombination and rep 79.6 84 0.0018 32.9 19.6 14 140-153 299-312 (553)
308 KOG4460 Nuclear pore complex, 79.5 88 0.0019 33.0 18.7 12 125-136 671-682 (741)
309 KOG4603 TBP-1 interacting prot 79.4 47 0.001 29.8 15.0 36 66-101 79-114 (201)
310 KOG2264 Exostosin EXT1L [Signa 79.3 20 0.00044 37.8 10.8 62 132-193 88-149 (907)
311 PF15294 Leu_zip: Leucine zipp 79.2 62 0.0013 31.1 20.9 71 121-191 130-209 (278)
312 TIGR03794 NHPM_micro_HlyD NHPM 79.2 72 0.0016 31.8 20.1 28 39-66 90-117 (421)
313 cd00890 Prefoldin Prefoldin is 79.1 33 0.00072 27.9 12.1 38 107-144 85-122 (129)
314 PRK11519 tyrosine kinase; Prov 78.9 1E+02 0.0022 33.3 17.4 25 59-83 267-291 (719)
315 PF10205 KLRAQ: Predicted coil 78.9 25 0.00055 28.8 9.2 44 43-86 10-53 (102)
316 PF15290 Syntaphilin: Golgi-lo 78.7 62 0.0013 31.2 13.1 41 46-86 62-102 (305)
317 PF07989 Microtub_assoc: Micro 78.6 28 0.00061 26.8 9.5 32 68-99 2-33 (75)
318 TIGR03752 conj_TIGR03752 integ 78.4 28 0.00061 35.8 11.5 24 72-95 58-81 (472)
319 PF05557 MAD: Mitotic checkpoi 78.3 1.2 2.6E-05 47.8 1.9 31 49-79 347-377 (722)
320 KOG3433 Protein involved in me 78.1 54 0.0012 29.8 14.0 31 107-137 114-144 (203)
321 TIGR03495 phage_LysB phage lys 78.1 44 0.00095 28.7 11.1 30 106-135 65-94 (135)
322 PRK10698 phage shock protein P 77.9 58 0.0013 30.0 18.8 142 49-197 28-184 (222)
323 COG4026 Uncharacterized protei 77.9 35 0.00075 31.9 10.9 12 125-136 144-155 (290)
324 PF10234 Cluap1: Clusterin-ass 77.8 67 0.0014 30.7 13.7 12 113-124 208-219 (267)
325 PF05103 DivIVA: DivIVA protei 77.7 1.7 3.6E-05 36.0 2.2 59 42-100 22-80 (131)
326 COG2900 SlyX Uncharacterized p 77.6 18 0.0004 27.7 7.6 53 49-101 5-57 (72)
327 KOG2685 Cystoskeletal protein 77.6 85 0.0018 31.8 14.7 28 72-99 284-311 (421)
328 PF03148 Tektin: Tektin family 77.4 81 0.0017 31.4 18.0 107 92-199 249-365 (384)
329 PF13870 DUF4201: Domain of un 77.2 50 0.0011 28.9 23.4 31 43-73 4-34 (177)
330 PF15456 Uds1: Up-regulated Du 76.9 44 0.00096 28.2 11.5 34 105-138 77-110 (124)
331 PF11471 Sugarporin_N: Maltopo 76.8 13 0.00028 27.5 6.4 28 42-69 29-56 (60)
332 PRK05431 seryl-tRNA synthetase 76.8 24 0.00052 35.7 10.6 67 65-136 27-93 (425)
333 KOG0243 Kinesin-like protein [ 76.7 1.4E+02 0.003 33.8 27.8 33 113-145 480-512 (1041)
334 PRK14011 prefoldin subunit alp 76.4 50 0.0011 28.6 12.4 30 107-136 86-115 (144)
335 PF06103 DUF948: Bacterial pro 76.3 34 0.00074 26.6 10.5 53 45-97 26-78 (90)
336 PF03938 OmpH: Outer membrane 76.1 47 0.001 28.1 12.9 25 108-132 79-103 (158)
337 KOG4603 TBP-1 interacting prot 76.0 60 0.0013 29.2 12.2 34 46-79 80-113 (201)
338 PF10212 TTKRSYEDQ: Predicted 75.7 62 0.0013 33.7 13.1 85 44-128 419-506 (518)
339 PF11559 ADIP: Afadin- and alp 75.7 50 0.0011 28.1 17.3 10 87-96 66-75 (151)
340 PF05008 V-SNARE: Vesicle tran 75.6 32 0.00069 25.9 9.7 74 47-133 5-78 (79)
341 KOG0982 Centrosomal protein Nu 75.5 1E+02 0.0022 31.6 19.9 86 111-196 299-384 (502)
342 PF10805 DUF2730: Protein of u 75.5 14 0.0003 30.2 7.0 54 42-95 39-94 (106)
343 TIGR02971 heterocyst_DevB ABC 74.8 79 0.0017 30.1 17.4 28 43-70 53-80 (327)
344 PF04728 LPP: Lipoprotein leuc 74.8 26 0.00057 25.6 7.4 23 72-94 16-38 (56)
345 PF05377 FlaC_arch: Flagella a 74.7 13 0.00027 27.1 5.7 17 75-91 16-32 (55)
346 PRK10803 tol-pal system protei 74.7 32 0.00069 32.5 10.2 52 44-95 39-90 (263)
347 PF05278 PEARLI-4: Arabidopsis 74.7 80 0.0017 30.2 12.8 39 125-163 223-261 (269)
348 PF13863 DUF4200: Domain of un 74.4 46 0.001 27.2 17.6 100 46-149 8-107 (126)
349 PF05529 Bap31: B-cell recepto 74.2 27 0.00058 31.1 9.2 14 47-60 127-140 (192)
350 PF01920 Prefoldin_2: Prefoldi 74.2 40 0.00087 26.4 12.2 29 113-141 66-94 (106)
351 PF04859 DUF641: Plant protein 74.2 12 0.00027 31.9 6.6 45 43-87 78-122 (131)
352 PRK15396 murein lipoprotein; P 74.1 21 0.00045 27.8 7.3 19 46-64 26-44 (78)
353 PRK13729 conjugal transfer pil 74.0 13 0.00028 38.2 7.8 51 46-96 70-120 (475)
354 PF09787 Golgin_A5: Golgin sub 73.8 1.2E+02 0.0025 31.5 17.5 144 39-182 275-430 (511)
355 PF08647 BRE1: BRE1 E3 ubiquit 73.7 44 0.00096 26.6 13.0 41 59-99 3-43 (96)
356 PRK00106 hypothetical protein; 73.6 1.2E+02 0.0027 31.8 23.1 7 10-16 10-16 (535)
357 PRK10920 putative uroporphyrin 73.6 31 0.00068 34.7 10.3 82 2-99 35-125 (390)
358 PRK09973 putative outer membra 73.6 19 0.00042 28.5 7.0 19 46-64 25-43 (85)
359 KOG0249 LAR-interacting protei 73.6 1.4E+02 0.0031 32.5 19.2 83 116-198 163-256 (916)
360 PF10458 Val_tRNA-synt_C: Valy 73.5 22 0.00049 26.3 7.2 18 116-133 46-63 (66)
361 PF09731 Mitofilin: Mitochondr 73.0 1.2E+02 0.0027 31.5 22.3 18 45-62 251-268 (582)
362 KOG1962 B-cell receptor-associ 72.6 49 0.0011 30.7 10.5 18 186-203 193-210 (216)
363 PF05700 BCAS2: Breast carcino 72.2 77 0.0017 29.1 11.9 63 39-101 98-164 (221)
364 TIGR02971 heterocyst_DevB ABC 72.2 91 0.002 29.6 20.4 20 42-61 59-78 (327)
365 PLN02678 seryl-tRNA synthetase 72.1 30 0.00065 35.4 10.0 67 65-136 32-98 (448)
366 PF11180 DUF2968: Protein of u 71.9 79 0.0017 28.8 12.2 14 75-88 83-96 (192)
367 KOG2685 Cystoskeletal protein 71.8 1.2E+02 0.0026 30.8 13.7 26 170-195 363-388 (421)
368 TIGR03319 YmdA_YtgF conserved 71.6 1.3E+02 0.0029 31.3 23.6 9 240-248 259-267 (514)
369 PRK04654 sec-independent trans 71.6 74 0.0016 29.4 11.3 19 1-19 4-22 (214)
370 COG4477 EzrA Negative regulato 71.4 1.4E+02 0.003 31.4 24.4 80 121-200 352-431 (570)
371 PF05377 FlaC_arch: Flagella a 71.1 15 0.00033 26.7 5.5 32 44-75 6-37 (55)
372 PRK15422 septal ring assembly 70.8 48 0.001 25.9 11.1 25 75-99 6-30 (79)
373 PF08581 Tup_N: Tup N-terminal 70.4 49 0.0011 25.8 12.4 73 121-196 2-74 (79)
374 PF07851 TMPIT: TMPIT-like pro 70.3 63 0.0014 31.8 11.3 44 94-138 4-47 (330)
375 PF01519 DUF16: Protein of unk 70.1 52 0.0011 27.0 8.9 7 44-50 25-31 (102)
376 PF13514 AAA_27: AAA domain 70.1 2E+02 0.0044 32.7 28.0 32 171-202 895-926 (1111)
377 TIGR01010 BexC_CtrB_KpsE polys 70.0 1.1E+02 0.0024 29.7 19.7 26 76-101 173-198 (362)
378 PF09738 DUF2051: Double stran 69.9 1.1E+02 0.0024 29.7 15.8 19 46-64 78-96 (302)
379 COG4477 EzrA Negative regulato 69.7 1.5E+02 0.0033 31.1 20.8 24 41-64 251-274 (570)
380 TIGR00998 8a0101 efflux pump m 69.3 1.1E+02 0.0023 29.2 17.7 59 39-97 74-132 (334)
381 KOG1962 B-cell receptor-associ 69.2 43 0.00092 31.0 9.3 29 148-176 169-197 (216)
382 TIGR00634 recN DNA repair prot 69.1 1.5E+02 0.0033 30.9 16.8 33 111-143 303-335 (563)
383 KOG0999 Microtubule-associated 68.6 1.6E+02 0.0036 31.1 22.2 56 44-99 7-69 (772)
384 PF10805 DUF2730: Protein of u 68.5 38 0.00082 27.6 8.1 51 46-96 36-88 (106)
385 PF11853 DUF3373: Protein of u 68.4 9 0.0002 39.5 5.3 19 46-64 32-50 (489)
386 PF07851 TMPIT: TMPIT-like pro 68.2 88 0.0019 30.8 11.8 58 44-101 3-60 (330)
387 PRK10476 multidrug resistance 67.6 1.2E+02 0.0026 29.2 16.2 29 49-77 83-111 (346)
388 KOG0244 Kinesin-like protein [ 67.5 2.1E+02 0.0046 32.0 16.3 96 41-136 470-568 (913)
389 PF03915 AIP3: Actin interacti 67.5 1.5E+02 0.0032 30.2 15.5 144 45-191 151-311 (424)
390 PF06785 UPF0242: Uncharacteri 67.5 1.4E+02 0.0029 29.7 17.5 129 61-189 80-218 (401)
391 PF06705 SF-assemblin: SF-asse 67.4 1.1E+02 0.0023 28.5 22.7 54 109-162 85-139 (247)
392 KOG2751 Beclin-like protein [S 67.1 1.5E+02 0.0033 30.2 14.2 72 120-191 180-251 (447)
393 cd00584 Prefoldin_alpha Prefol 67.0 71 0.0015 26.3 12.6 17 47-63 8-24 (129)
394 PF06785 UPF0242: Uncharacteri 67.0 1.4E+02 0.003 29.7 14.6 55 40-94 87-141 (401)
395 PRK00106 hypothetical protein; 66.9 1.7E+02 0.0037 30.7 24.5 13 280-292 272-284 (535)
396 PHA03332 membrane glycoprotein 66.6 2E+02 0.0042 32.9 14.9 32 46-77 885-916 (1328)
397 PRK10246 exonuclease subunit S 66.3 2.3E+02 0.0051 32.0 22.3 153 47-200 667-871 (1047)
398 PF14915 CCDC144C: CCDC144C pr 66.1 1.3E+02 0.0029 29.2 21.9 50 44-93 150-199 (305)
399 PRK00888 ftsB cell division pr 66.0 25 0.00054 28.7 6.5 10 1-10 1-10 (105)
400 PF12777 MT: Microtubule-bindi 65.9 1.4E+02 0.003 29.2 15.7 14 201-214 105-118 (344)
401 COG3879 Uncharacterized protei 65.6 47 0.001 31.4 9.0 30 42-71 54-83 (247)
402 PF14712 Snapin_Pallidin: Snap 65.6 62 0.0013 25.1 10.4 31 46-76 15-45 (92)
403 PRK09973 putative outer membra 65.6 67 0.0014 25.5 9.2 42 41-82 27-68 (85)
404 KOG4438 Centromere-associated 65.4 1.6E+02 0.0036 30.0 21.5 56 126-181 244-299 (446)
405 PF04375 HemX: HemX; InterPro 65.4 1.5E+02 0.0032 29.4 16.0 24 46-69 54-77 (372)
406 PRK01203 prefoldin subunit alp 65.4 87 0.0019 26.7 10.9 32 106-137 84-115 (130)
407 PF05531 NPV_P10: Nucleopolyhe 65.3 35 0.00076 26.4 6.7 13 87-99 18-30 (75)
408 KOG2077 JNK/SAPK-associated pr 65.2 2E+02 0.0042 30.7 15.1 98 80-185 329-426 (832)
409 KOG0288 WD40 repeat protein Ti 64.9 1.7E+02 0.0036 29.9 16.8 46 56-101 3-48 (459)
410 PRK01919 tatB sec-independent 64.4 59 0.0013 29.0 8.9 18 2-19 5-22 (169)
411 TIGR03319 YmdA_YtgF conserved 64.2 1.9E+02 0.0041 30.2 23.8 14 280-293 251-264 (514)
412 PF07246 Phlebovirus_NSM: Phle 63.6 1.4E+02 0.003 28.5 11.9 19 50-68 146-164 (264)
413 PF05791 Bacillus_HBL: Bacillu 63.4 1.1E+02 0.0024 27.2 13.6 31 154-184 145-175 (184)
414 COG3074 Uncharacterized protei 63.4 66 0.0014 24.7 10.3 24 76-99 7-30 (79)
415 TIGR03545 conserved hypothetic 63.3 1.3E+02 0.0028 31.8 12.7 8 114-121 196-203 (555)
416 PF08702 Fib_alpha: Fibrinogen 63.0 1E+02 0.0022 26.7 16.0 100 42-144 33-132 (146)
417 PF02388 FemAB: FemAB family; 62.8 44 0.00095 33.5 8.9 11 259-269 371-381 (406)
418 PRK04098 sec-independent trans 62.5 5.8 0.00013 34.9 2.3 19 1-19 4-22 (158)
419 PF10458 Val_tRNA-synt_C: Valy 62.3 53 0.0011 24.2 7.2 17 48-64 7-23 (66)
420 KOG2751 Beclin-like protein [S 62.0 1.9E+02 0.0041 29.5 15.0 71 121-191 195-265 (447)
421 PLN02320 seryl-tRNA synthetase 61.7 66 0.0014 33.5 10.1 58 39-98 68-125 (502)
422 KOG0239 Kinesin (KAR3 subfamil 61.6 2.4E+02 0.0052 30.5 20.1 11 210-220 322-332 (670)
423 PF05266 DUF724: Protein of un 61.1 1.3E+02 0.0028 27.2 13.6 53 139-191 126-178 (190)
424 PF03978 Borrelia_REV: Borreli 61.1 1.2E+02 0.0025 26.8 12.8 17 3-19 6-22 (160)
425 PF13747 DUF4164: Domain of un 61.0 82 0.0018 24.9 12.3 30 121-150 37-66 (89)
426 PF13863 DUF4200: Domain of un 60.7 91 0.002 25.4 17.4 49 108-156 59-107 (126)
427 COG3352 FlaC Putative archaeal 60.6 93 0.002 27.3 9.2 56 44-99 43-105 (157)
428 TIGR00998 8a0101 efflux pump m 60.6 1.5E+02 0.0033 28.0 17.1 47 48-94 76-122 (334)
429 PF05278 PEARLI-4: Arabidopsis 58.9 1.7E+02 0.0037 28.0 15.6 52 148-199 197-248 (269)
430 KOG3634 Troponin [Cytoskeleton 58.6 28 0.0006 34.2 6.3 65 152-216 238-303 (361)
431 PHA01750 hypothetical protein 58.5 17 0.00037 27.5 3.8 22 44-65 41-62 (75)
432 PF07058 Myosin_HC-like: Myosi 58.2 1.9E+02 0.0042 28.3 19.0 80 48-127 3-84 (351)
433 KOG3990 Uncharacterized conser 58.2 51 0.0011 31.4 7.7 16 47-62 227-242 (305)
434 PF05103 DivIVA: DivIVA protei 58.1 9.3 0.0002 31.5 2.7 31 70-100 22-52 (131)
435 PF04871 Uso1_p115_C: Uso1 / p 58.1 1.2E+02 0.0026 25.9 15.0 29 148-176 81-109 (136)
436 PRK15178 Vi polysaccharide exp 57.9 2.3E+02 0.0049 29.1 16.0 131 43-174 247-385 (434)
437 KOG1850 Myosin-like coiled-coi 57.6 2E+02 0.0044 28.4 21.7 78 125-202 245-322 (391)
438 PF09403 FadA: Adhesion protei 57.2 1.2E+02 0.0026 25.7 14.6 28 151-178 93-120 (126)
439 COG3524 KpsE Capsule polysacch 57.1 2E+02 0.0044 28.3 13.3 45 125-169 225-269 (372)
440 PF14992 TMCO5: TMCO5 family 57.1 1.9E+02 0.0041 27.9 17.6 10 308-317 261-270 (280)
441 PRK10361 DNA recombination pro 57.0 2.4E+02 0.0053 29.2 21.4 33 282-315 365-397 (475)
442 PF05529 Bap31: B-cell recepto 56.9 1.3E+02 0.0029 26.6 10.2 12 123-134 161-172 (192)
443 PF02403 Seryl_tRNA_N: Seryl-t 56.2 1E+02 0.0022 24.6 9.8 58 133-190 39-99 (108)
444 KOG1937 Uncharacterized conser 56.0 2.5E+02 0.0054 29.0 21.4 15 226-240 440-454 (521)
445 PRK14011 prefoldin subunit alp 56.0 1.4E+02 0.0029 25.9 14.0 26 125-150 90-115 (144)
446 PF12761 End3: Actin cytoskele 55.9 1.6E+02 0.0035 26.8 10.7 23 125-147 162-184 (195)
447 PF09738 DUF2051: Double stran 55.7 2E+02 0.0044 27.9 14.0 47 53-99 78-124 (302)
448 COG0172 SerS Seryl-tRNA synthe 54.9 1.4E+02 0.0031 30.4 11.0 36 62-97 25-60 (429)
449 PF00430 ATP-synt_B: ATP synth 54.9 1.1E+02 0.0025 24.7 13.5 22 43-64 35-56 (132)
450 PF14992 TMCO5: TMCO5 family 54.7 2.1E+02 0.0045 27.6 19.1 17 46-62 26-42 (280)
451 PF14988 DUF4515: Domain of un 54.7 1.7E+02 0.0037 26.7 18.9 95 84-178 15-109 (206)
452 PF06476 DUF1090: Protein of u 54.7 1.2E+02 0.0027 25.1 11.3 107 6-123 2-114 (115)
453 PF03961 DUF342: Protein of un 54.4 89 0.0019 31.6 9.6 28 163-190 380-407 (451)
454 COG5570 Uncharacterized small 54.4 52 0.0011 23.8 5.5 17 114-130 38-54 (57)
455 PRK13182 racA polar chromosome 54.1 1E+02 0.0022 27.5 8.8 56 45-100 85-145 (175)
456 PF13747 DUF4164: Domain of un 54.0 1.1E+02 0.0024 24.2 12.7 28 121-148 44-71 (89)
457 PF04799 Fzo_mitofusin: fzo-li 54.0 1.5E+02 0.0031 26.6 9.6 12 117-128 152-163 (171)
458 PF14193 DUF4315: Domain of un 53.8 46 0.001 26.2 5.8 27 125-151 3-29 (83)
459 KOG3091 Nuclear pore complex, 53.6 2.8E+02 0.0061 28.9 16.7 25 64-88 339-363 (508)
460 PRK05431 seryl-tRNA synthetase 53.4 95 0.0021 31.4 9.5 13 232-244 168-180 (425)
461 KOG2629 Peroxisomal membrane a 53.1 1.5E+02 0.0031 28.8 10.0 31 71-101 127-157 (300)
462 PRK11020 hypothetical protein; 53.0 1.4E+02 0.003 25.1 9.2 78 42-121 2-92 (118)
463 PRK00286 xseA exodeoxyribonucl 53.0 2.5E+02 0.0055 28.1 16.8 144 20-163 240-391 (438)
464 TIGR01554 major_cap_HK97 phage 52.6 80 0.0017 31.0 8.7 62 40-101 1-62 (378)
465 PRK03598 putative efflux pump 52.4 2.2E+02 0.0047 27.2 15.5 123 39-163 75-204 (331)
466 PF04065 Not3: Not1 N-terminal 52.3 1.2E+02 0.0026 28.4 9.3 75 43-133 127-207 (233)
467 PRK00888 ftsB cell division pr 51.8 82 0.0018 25.6 7.2 67 7-87 3-69 (105)
468 PF07798 DUF1640: Protein of u 51.7 1.7E+02 0.0037 25.8 15.8 106 41-149 47-154 (177)
469 PF14817 HAUS5: HAUS augmin-li 51.5 3.4E+02 0.0074 29.2 14.1 91 48-138 75-167 (632)
470 PRK10636 putative ABC transpor 51.4 1.3E+02 0.0029 31.9 10.7 91 108-198 548-638 (638)
471 PF07544 Med9: RNA polymerase 51.3 78 0.0017 24.6 6.8 61 36-96 19-82 (83)
472 KOG2391 Vacuolar sorting prote 50.9 2E+02 0.0044 28.5 10.8 72 104-178 213-284 (365)
473 PF03962 Mnd1: Mnd1 family; I 50.7 1.9E+02 0.0041 26.0 14.0 102 45-148 62-167 (188)
474 PF15290 Syntaphilin: Golgi-lo 50.7 2.4E+02 0.0053 27.3 13.5 93 82-189 63-155 (305)
475 PF12072 DUF3552: Domain of un 50.6 1.9E+02 0.0041 26.0 25.8 167 6-202 5-189 (201)
476 PF00901 Orbi_VP5: Orbivirus o 50.5 3.1E+02 0.0068 28.5 20.8 160 12-195 66-228 (508)
477 PF05791 Bacillus_HBL: Bacillu 50.5 1.5E+02 0.0032 26.4 9.3 80 108-190 102-181 (184)
478 smart00806 AIP3 Actin interact 50.3 3E+02 0.0064 28.2 21.3 195 16-212 125-344 (426)
479 PF05064 Nsp1_C: Nsp1-like C-t 50.3 12 0.00026 31.0 2.2 87 48-135 18-104 (116)
480 KOG2129 Uncharacterized conser 50.2 3E+02 0.0065 28.2 20.5 152 40-191 138-329 (552)
481 PRK10869 recombination and rep 50.0 3.3E+02 0.0071 28.6 16.0 132 59-191 247-378 (553)
482 PF02388 FemAB: FemAB family; 49.9 63 0.0014 32.3 7.6 56 42-101 239-294 (406)
483 KOG0998 Synaptic vesicle prote 49.8 48 0.001 36.7 7.2 136 41-177 459-594 (847)
484 KOG0998 Synaptic vesicle prote 49.6 54 0.0012 36.3 7.5 124 41-165 452-575 (847)
485 PF09787 Golgin_A5: Golgin sub 49.4 3.2E+02 0.0069 28.3 24.2 211 34-247 98-371 (511)
486 TIGR01554 major_cap_HK97 phage 49.2 97 0.0021 30.4 8.7 68 47-115 1-68 (378)
487 PF03961 DUF342: Protein of un 49.2 1.8E+02 0.0039 29.4 10.8 73 70-142 331-408 (451)
488 PF12709 Kinetocho_Slk19: Cent 49.0 1.4E+02 0.0029 23.9 11.5 74 69-142 4-82 (87)
489 PF00170 bZIP_1: bZIP transcri 48.9 83 0.0018 22.8 6.3 40 51-90 25-64 (64)
490 PF09766 FimP: Fms-interacting 48.8 2.8E+02 0.006 27.4 17.3 168 49-228 2-187 (355)
491 PRK00708 sec-independent trans 48.7 2.2E+02 0.0048 26.3 10.3 78 1-98 4-94 (209)
492 PF15066 CAGE1: Cancer-associa 48.7 3.3E+02 0.0072 28.3 21.7 154 43-196 367-527 (527)
493 PF04912 Dynamitin: Dynamitin 48.6 2.8E+02 0.0062 27.5 18.3 142 26-177 226-387 (388)
494 PF15456 Uds1: Up-regulated Du 48.5 1.7E+02 0.0036 24.7 12.2 79 116-195 22-111 (124)
495 PLN02320 seryl-tRNA synthetase 48.4 1.5E+02 0.0033 30.8 10.2 95 46-142 68-163 (502)
496 KOG0982 Centrosomal protein Nu 48.3 3.3E+02 0.007 28.0 17.2 147 69-216 293-447 (502)
497 PF02841 GBP_C: Guanylate-bind 48.1 2.5E+02 0.0054 26.7 14.8 108 62-171 186-297 (297)
498 PF11570 E2R135: Coiled-coil r 48.1 1.8E+02 0.0039 25.0 13.8 111 71-182 6-136 (136)
499 PF12761 End3: Actin cytoskele 48.1 1.2E+02 0.0025 27.8 8.2 97 39-136 97-194 (195)
500 cd07599 BAR_Rvs167p The Bin/Am 47.9 2.1E+02 0.0046 25.8 21.3 171 41-218 5-195 (216)
No 1
>PRK11637 AmiB activator; Provisional
Probab=99.29 E-value=1.7e-09 Score=108.05 Aligned_cols=154 Identities=15% Similarity=0.253 Sum_probs=96.2
Q ss_pred CCchHHHHHHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHH
Q 020809 39 DSSPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKK---ETLNAAEQVDKAH 115 (321)
Q Consensus 39 ~~~~l~~el~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~qk~---~~~~~eeq~~~~~ 115 (321)
....+++++++++.++..++++++++..+|..++.+|..++..|+.++.+|..++.+|+.++.+ .+.+++.+...+.
T Consensus 48 ~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~ 127 (428)
T PRK11637 48 QLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLA 127 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566677777777777777777777777777777777777777777777777777777777664 3455666666677
Q ss_pred HHHHH----------------------------HH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Q 020809 116 ARADE----------------------------LE-------KQIDNLKKESEKQQKEKEALEARAIEAEKKISDLS--- 157 (321)
Q Consensus 116 ~Rire----------------------------L~-------k~Ie~Lk~ele~~~~kk~~LEa~a~e~ekk~~el~--- 157 (321)
.|++. |+ ..|+.+.....++...+..++....+++..+.++.
T Consensus 128 ~rlra~Y~~g~~~~l~vLl~a~~~~~~~r~~~~l~~i~~~d~~~l~~l~~~~~~L~~~k~~le~~~~~l~~~~~e~~~~k 207 (428)
T PRK11637 128 AQLDAAFRQGEHTGLQLILSGEESQRGERILAYFGYLNQARQETIAELKQTREELAAQKAELEEKQSQQKTLLYEQQAQQ 207 (428)
T ss_pred HHHHHHHHcCCCcHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77776 11 12555555555555555555544444444444444
Q ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 158 -----------AKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAK 192 (321)
Q Consensus 158 -----------~~le~Lek~~~Eqk~~l~elE~~lq~~Eeei~kl~ 192 (321)
..+..|.....++...+.++++..+.++..|.+++
T Consensus 208 ~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l~~~~~~L~~~I~~l~ 253 (428)
T PRK11637 208 QKLEQARNERKKTLTGLESSLQKDQQQLSELRANESRLRDSIARAE 253 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555566666666666666666553
No 2
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.94 E-value=8.4e-07 Score=83.30 Aligned_cols=143 Identities=18% Similarity=0.268 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-----
Q 020809 46 ELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADE----- 120 (321)
Q Consensus 46 el~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~qk~~~~~~eeq~~~~~~Rire----- 120 (321)
+++++......++.+++.+..++.+...+++..+.++.....+|..|+.+|+.+ .....+|.+.+++|+|.
T Consensus 39 ~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~----~~~I~~r~~~l~~raRAmq~nG 114 (265)
T COG3883 39 KLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAEL----KENIVERQELLKKRARAMQVNG 114 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHcC
Confidence 333333333333333333333333333333333333333333344444444333 24556667788888888
Q ss_pred ------------------------HHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 121 ------------------------LEKQ-------IDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDE 169 (321)
Q Consensus 121 ------------------------L~k~-------Ie~Lk~ele~~~~kk~~LEa~a~e~ekk~~el~~~le~Lek~~~E 169 (321)
+..+ |+..+.+...+..+...++.....+.....++...+..|+..+.+
T Consensus 115 ~~t~Yidvil~SkSfsD~IsRvtAi~~iv~aDk~ile~qk~dk~~Le~kq~~l~~~~e~l~al~~e~e~~~~~L~~qk~e 194 (265)
T COG3883 115 TATSYIDVILNSKSFSDLISRVTAISVIVDADKKILEQQKEDKKSLEEKQAALEDKLETLVALQNELETQLNSLNSQKAE 194 (265)
T ss_pred ChhHHHHHHHccCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222 555555555555555666666666666777777777778888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 020809 170 QKSKIRKTERALKVAEEEMMRAK 192 (321)
Q Consensus 170 qk~~l~elE~~lq~~Eeei~kl~ 192 (321)
++..+..+......+..+...+.
T Consensus 195 ~~~l~~~~aa~~a~~~~e~a~l~ 217 (265)
T COG3883 195 KNALIAALAAKEASALGEKAALE 217 (265)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHH
Confidence 88888877777777777766664
No 3
>PRK11637 AmiB activator; Provisional
Probab=98.60 E-value=4.8e-05 Score=76.21 Aligned_cols=83 Identities=18% Similarity=0.238 Sum_probs=70.7
Q ss_pred chHHHHHHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 020809 41 SPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADE 120 (321)
Q Consensus 41 ~~l~~el~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~qk~~~~~~eeq~~~~~~Rire 120 (321)
++++.++++++.+|.++++.+.++..+++....+|+.++..|.....+|+.++.+|..++. ....++.++..++.++..
T Consensus 43 ~~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~-ei~~l~~eI~~~q~~l~~ 121 (428)
T PRK11637 43 SDNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNK-QIDELNASIAKLEQQQAA 121 (428)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 4579999999999999999999999999999999999999999999999999999988866 556777777777777777
Q ss_pred HHHH
Q 020809 121 LEKQ 124 (321)
Q Consensus 121 L~k~ 124 (321)
++..
T Consensus 122 ~~~~ 125 (428)
T PRK11637 122 QERL 125 (428)
T ss_pred HHHH
Confidence 5554
No 4
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=98.56 E-value=3.4e-05 Score=76.78 Aligned_cols=79 Identities=18% Similarity=0.285 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 020809 124 QIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSRSKEL 202 (321)
Q Consensus 124 ~Ie~Lk~ele~~~~kk~~LEa~a~e~ekk~~el~~~le~Lek~~~Eqk~~l~elE~~lq~~Eeei~kl~~ea~~~a~ql 202 (321)
.|+.|.+++..+..-...+++.+.++...+.+.......+.....|++..+.+++..+..-+..+..+......+.+.|
T Consensus 162 ~i~~l~~~~~~l~~~~~~iaaeq~~l~~~~~eq~~q~~kl~~~~~E~kk~~~~l~~~l~~~q~~l~eL~~~~~~L~~~I 240 (420)
T COG4942 162 RIDALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLKNEI 240 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3888888888888888888888888888888888888888888888888888888888777777777766666555544
No 5
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.42 E-value=0.0002 Score=67.40 Aligned_cols=153 Identities=19% Similarity=0.224 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 71 KDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAE 150 (321)
Q Consensus 71 kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~qk~~~~~~eeq~~~~~~RireL~k~Ie~Lk~ele~~~~kk~~LEa~a~e~e 150 (321)
.|..|..+++....++.+|.+|+++|++++. +..+.+++.+..+..+..|+.+|+.++..|.+++ ..|..|++.+.
T Consensus 36 ~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~-k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~---~~l~~raRAmq 111 (265)
T COG3883 36 QDSKLSELQKEKKNIQNEIESLDNQIEEIQS-KIDELQKEIDQSKAEIKKLQKEIAELKENIVERQ---ELLKKRARAMQ 111 (265)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 3444444455555555555555555555544 3344555555555666666677777777777777 77788888777
Q ss_pred ----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-------hh
Q 020809 151 ----------------------KKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSRS-------KE 201 (321)
Q Consensus 151 ----------------------kk~~el~~~le~Lek~~~Eqk~~l~elE~~lq~~Eeei~kl~~ea~~~a-------~q 201 (321)
.|+..++..++...++...++.+-..++.....+++.+..+..-..... .+
T Consensus 112 ~nG~~t~Yidvil~SkSfsD~IsRvtAi~~iv~aDk~ile~qk~dk~~Le~kq~~l~~~~e~l~al~~e~e~~~~~L~~q 191 (265)
T COG3883 112 VNGTATSYIDVILNSKSFSDLISRVTAISVIVDADKKILEQQKEDKKSLEEKQAALEDKLETLVALQNELETQLNSLNSQ 191 (265)
T ss_pred HcCChhHHHHHHHccCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4777788888888888888888888888888888888777744333332 22
Q ss_pred hhhhhccCchhHHHHHHHHHHHHHHhHH
Q 020809 202 LTEVHSAWLPPWLAVHLLQCQSLIETHW 229 (321)
Q Consensus 202 l~e~~g~~l~Pwla~~~~~~~~~~~~~~ 229 (321)
..+ ..-+.--++...+.....+....
T Consensus 192 k~e--~~~l~~~~aa~~a~~~~e~a~l~ 217 (265)
T COG3883 192 KAE--KNALIAALAAKEASALGEKAALE 217 (265)
T ss_pred HHH--HHHHHHHHHHHHHHhHHHHHHHH
Confidence 222 22444455555555555555444
No 6
>PRK09039 hypothetical protein; Validated
Probab=98.31 E-value=0.00036 Score=68.37 Aligned_cols=82 Identities=21% Similarity=0.257 Sum_probs=40.0
Q ss_pred hhHHHHHHHHHHHHhhhhhhcccCCCCCCcccccCCCCchHHHHHHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHH
Q 020809 3 ASKLVIFSLFFALILTAADVSIQGEDVPPLTASDAVDSSPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAI 82 (321)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~el~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i 82 (321)
.+-||++++|+++||..+..+-.. .....+.+|++++.+|.+|-..++--......++..|.++...+
T Consensus 23 ~~~ll~~~~f~l~~f~~~q~fLs~------------~i~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l 90 (343)
T PRK09039 23 LSTLLLVIMFLLTVFVVAQFFLSR------------EISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASL 90 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------------HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 456777777766677663332111 11223345555555555544444444444444555555555444
Q ss_pred HHHHHHHHHHHHHH
Q 020809 83 QDKSERIVSLQKEL 96 (321)
Q Consensus 83 ~e~~~~I~~Lq~eI 96 (321)
...+.....|++.+
T Consensus 91 ~~a~~~r~~Le~~~ 104 (343)
T PRK09039 91 SAAEAERSRLQALL 104 (343)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444433
No 7
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=98.29 E-value=0.00026 Score=61.09 Aligned_cols=60 Identities=23% Similarity=0.371 Sum_probs=43.7
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 42 PLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQK 101 (321)
Q Consensus 42 ~l~~el~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~qk 101 (321)
+++.+.+.+..+...++.++..++++...++..|..++..+..++.++..++..+...+.
T Consensus 4 ~lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~ 63 (143)
T PF12718_consen 4 ALKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKE 63 (143)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666777777777777777777777777777777777777777777777777776644
No 8
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=98.11 E-value=0.0011 Score=57.21 Aligned_cols=54 Identities=22% Similarity=0.322 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 47 LDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQ 100 (321)
Q Consensus 47 l~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~q 100 (321)
|+.|+..........+.+..+++.++....+++.+|..++..+..|+.+|+.++
T Consensus 2 m~~lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~ 55 (143)
T PF12718_consen 2 MQALKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLE 55 (143)
T ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555555555555555555555555555543
No 9
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.06 E-value=0.0014 Score=72.37 Aligned_cols=41 Identities=37% Similarity=0.513 Sum_probs=17.1
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHH
Q 020809 42 PLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAI 82 (321)
Q Consensus 42 ~l~~el~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i 82 (321)
.+..++..++.++..++..+.....++..+...+...+..+
T Consensus 291 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 331 (1164)
T TIGR02169 291 RVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEI 331 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444433333333333333
No 10
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=98.02 E-value=0.0039 Score=68.03 Aligned_cols=102 Identities=20% Similarity=0.250 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccCchhHHHHHHH
Q 020809 140 EALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSRSKELTEVHSAWLPPWLAVHLL 219 (321)
Q Consensus 140 ~~LEa~a~e~ekk~~el~~~le~Lek~~~Eqk~~l~elE~~lq~~Eeei~kl~~ea~~~a~ql~e~~g~~l~Pwla~~~~ 219 (321)
..+..++.+++.+++.++..++.++.........++++..+....+++....+.....+.+.|.. -..+..
T Consensus 390 ~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~---------~~~~l~ 460 (1074)
T KOG0250|consen 390 NELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIEN---------ISEELK 460 (1074)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH---------HHHHHH
Confidence 33334444444444444444444444444444444444443333333333333333333332321 112344
Q ss_pred HHHHHHHhHHHhhCcchHHHHHHHHHHHHHhh
Q 020809 220 QCQSLIETHWNAHGKPAMDVAIQKALEKKAQA 251 (321)
Q Consensus 220 ~~~~~~~~~~~~hg~p~~~~~~~~~~~k~~~~ 251 (321)
.+....++..+-.| |-|-.+++--...+.++
T Consensus 461 ~lk~~k~dkvs~FG-~~m~~lL~~I~r~~~~f 491 (1074)
T KOG0250|consen 461 DLKKTKTDKVSAFG-PNMPQLLRAIERRKRRF 491 (1074)
T ss_pred HHHhcccchhhhcc-hhhHHHHHHHHHHHhcC
Confidence 56666788999999 99988887655554443
No 11
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.00 E-value=0.0016 Score=71.61 Aligned_cols=17 Identities=24% Similarity=0.161 Sum_probs=7.2
Q ss_pred HHHHHhhhhhcCchhHH
Q 020809 293 IEACEATKTAVTPHIIR 309 (321)
Q Consensus 293 ~~~~~~~~~~~~ph~~k 309 (321)
...|+.+...+.-+|.+
T Consensus 1031 ~~~F~~v~~~f~~~F~~ 1047 (1179)
T TIGR02168 1031 RERFKDTFDQVNENFQR 1047 (1179)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444444433
No 12
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=97.99 E-value=0.0017 Score=71.30 Aligned_cols=54 Identities=20% Similarity=0.329 Sum_probs=25.1
Q ss_pred chHHHHHHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 41 SPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQK 94 (321)
Q Consensus 41 ~~l~~el~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~ 94 (321)
..+..++..++..+..++..+..+..++......+.++...+..+...+..+..
T Consensus 673 ~~l~~e~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~ 726 (1179)
T TIGR02168 673 LERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSR 726 (1179)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555444444444444444444443333333333
No 13
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=97.96 E-value=0.0049 Score=57.23 Aligned_cols=46 Identities=20% Similarity=0.353 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHH
Q 020809 44 KIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERI 89 (321)
Q Consensus 44 ~~el~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I 89 (321)
..++..++.+|..++..++.....|......+..+++...+.+...
T Consensus 35 E~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~ 80 (237)
T PF00261_consen 35 EAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERAR 80 (237)
T ss_dssp HHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555554444444444444444444444444443333
No 14
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=97.96 E-value=0.0072 Score=56.39 Aligned_cols=17 Identities=18% Similarity=-0.009 Sum_probs=12.4
Q ss_pred CchhHHHHHHHHHHHHH
Q 020809 209 WLPPWLAVHLLQCQSLI 225 (321)
Q Consensus 209 ~l~Pwla~~~~~~~~~~ 225 (321)
-++|-|...|.++....
T Consensus 171 ~l~~ell~~yeri~~~~ 187 (239)
T COG1579 171 KLDPELLSEYERIRKNK 187 (239)
T ss_pred hcCHHHHHHHHHHHhcC
Confidence 47888888888776544
No 15
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=97.95 E-value=0.0014 Score=60.75 Aligned_cols=53 Identities=25% Similarity=0.412 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 47 LDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSL 99 (321)
Q Consensus 47 l~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~ 99 (321)
|..++..+...+..+......|+........++..+..+...|..|+.+++.+
T Consensus 3 ~~~l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~ 55 (237)
T PF00261_consen 3 IQQLKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERA 55 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 44444455555555555555555555555555555555555555555555444
No 16
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=97.84 E-value=0.033 Score=62.71 Aligned_cols=89 Identities=25% Similarity=0.402 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 107 AAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEE 186 (321)
Q Consensus 107 ~eeq~~~~~~RireL~k~Ie~Lk~ele~~~~kk~~LEa~a~e~ekk~~el~~~le~Lek~~~Eqk~~l~elE~~lq~~Ee 186 (321)
+..++..+..++.+++..+..+...+.........+......+...+..++..+...+....+....++.++..+..+..
T Consensus 826 ~~~ei~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~ 905 (1163)
T COG1196 826 LEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKE 905 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444444555555555555555555555555555555555555
Q ss_pred HHHHHHHHH
Q 020809 187 EMMRAKFEA 195 (321)
Q Consensus 187 ei~kl~~ea 195 (321)
.+.++....
T Consensus 906 ~~~~~~~~~ 914 (1163)
T COG1196 906 EIEKLRERL 914 (1163)
T ss_pred HHHHHHHHH
Confidence 555554333
No 17
>PRK03918 chromosome segregation protein; Provisional
Probab=97.75 E-value=0.022 Score=61.72 Aligned_cols=38 Identities=21% Similarity=0.323 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 151 KKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEM 188 (321)
Q Consensus 151 kk~~el~~~le~Lek~~~Eqk~~l~elE~~lq~~Eeei 188 (321)
..+..++..+..+..........+..++..+..++..+
T Consensus 666 ~~~~~l~~~l~~l~~~~~~l~~~i~~l~~~i~~~~~~~ 703 (880)
T PRK03918 666 EEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEEL 703 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444443333
No 18
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=97.74 E-value=0.01 Score=66.76 Aligned_cols=28 Identities=11% Similarity=0.192 Sum_probs=12.8
Q ss_pred hHHHHhHhHHHHHhhhhhcCchhHHHHh
Q 020809 285 VQTLKTKTIEACEATKTAVTPHIIRVQE 312 (321)
Q Consensus 285 ~q~~~~~~~~~~~~~~~~~~ph~~k~~~ 312 (321)
+..+..+..+.+..+-+.|.=||..+=.
T Consensus 1000 i~~~d~~~~~~f~~~f~~In~~F~~if~ 1027 (1163)
T COG1196 1000 IEELDKEKRERFKETFDKINENFSEIFK 1027 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444433
No 19
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.66 E-value=0.0067 Score=62.29 Aligned_cols=25 Identities=16% Similarity=0.189 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 165 KINDEQKSKIRKTERALKVAEEEMM 189 (321)
Q Consensus 165 k~~~Eqk~~l~elE~~lq~~Eeei~ 189 (321)
......+..+..++......+.++.
T Consensus 358 ~~~~~l~~ei~~l~~~~~~~~~~l~ 382 (562)
T PHA02562 358 DKAKKVKAAIEELQAEFVDNAEELA 382 (562)
T ss_pred HHHHHHHHHHHHHHhhhhchHHHHH
Confidence 3333333334433333333333333
No 20
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=97.66 E-value=0.025 Score=56.70 Aligned_cols=47 Identities=11% Similarity=0.145 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 146 AIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAK 192 (321)
Q Consensus 146 a~e~ekk~~el~~~le~Lek~~~Eqk~~l~elE~~lq~~Eeei~kl~ 192 (321)
...+...+.+....+.+++......+..+.++......+...|.+++
T Consensus 198 ~~kl~~~~~E~kk~~~~l~~~l~~~q~~l~eL~~~~~~L~~~Ias~e 244 (420)
T COG4942 198 QAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLKNEIASAE 244 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 33334444555555555555555555555555555555555555554
No 21
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.65 E-value=0.015 Score=62.01 Aligned_cols=105 Identities=23% Similarity=0.364 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH--------------
Q 020809 43 LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAA-------------- 108 (321)
Q Consensus 43 l~~el~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~qk~~~~~~e-------------- 108 (321)
++.+|.+++.+-.+|++++..+++....=...|..+|+.+.+-...-..++.++..-++.+..+.+
T Consensus 458 lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~ 537 (697)
T PF09726_consen 458 LKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERRQRASLEKQLQEERKARKEEEEKAARALAQAQATRQ 537 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccchhccc
Confidence 344455555555555555555555555555555666666666666666666666555443211100
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 109 EQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAI 147 (321)
Q Consensus 109 eq~~~~~~RireL~k~Ie~Lk~ele~~~~kk~~LEa~a~ 147 (321)
+-.+..+.|.++|+.++..|+.++...+..+..+|....
T Consensus 538 e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~ 576 (697)
T PF09726_consen 538 ECAESCRQRRRQLESELKKLRRELKQKEEQIRELESELQ 576 (697)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222335556677777777777777666666666665553
No 22
>PRK02224 chromosome segregation protein; Provisional
Probab=97.59 E-value=0.022 Score=61.90 Aligned_cols=30 Identities=17% Similarity=0.426 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhhhcHH
Q 020809 43 LKIELDQLKSKIRSLESHIDEKTQELKGKD 72 (321)
Q Consensus 43 l~~el~qlk~ki~~Les~i~e~~~eLk~kd 72 (321)
+...++.+...+..++..++++..++..+.
T Consensus 473 ~~~~~~~~~~~~~~le~~l~~~~~~~e~l~ 502 (880)
T PRK02224 473 DRERVEELEAELEDLEEEVEEVEERLERAE 502 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555554444333
No 23
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=97.59 E-value=0.033 Score=61.06 Aligned_cols=88 Identities=24% Similarity=0.355 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 106 NAAEQVDKAHARADELEKQIDNLKKES-EKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVA 184 (321)
Q Consensus 106 ~~eeq~~~~~~RireL~k~Ie~Lk~el-e~~~~kk~~LEa~a~e~ekk~~el~~~le~Lek~~~Eqk~~l~elE~~lq~~ 184 (321)
+.+..+...+.+++.|+++|..++++. .....++.+.+.+...++..+..++..+..|.....+....+..-+.+.-.+
T Consensus 362 ~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i 441 (1074)
T KOG0250|consen 362 EIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHI 441 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 344455555556666666676666666 5555556666666666666666666666666666666666666666655555
Q ss_pred HHHHHHHHH
Q 020809 185 EEEMMRAKF 193 (321)
Q Consensus 185 Eeei~kl~~ 193 (321)
+.++..+..
T Consensus 442 ~~~i~~l~k 450 (1074)
T KOG0250|consen 442 EGEILQLRK 450 (1074)
T ss_pred HHHHHHHHH
Confidence 555555533
No 24
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.57 E-value=0.053 Score=56.05 Aligned_cols=95 Identities=22% Similarity=0.337 Sum_probs=55.9
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------hhHHHHHHHHHHH
Q 020809 42 PLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKK------ETLNAAEQVDKAH 115 (321)
Q Consensus 42 ~l~~el~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~qk~------~~~~~eeq~~~~~ 115 (321)
-++.+++.......+|......+.++...+...+..++..+.........|..+...+... ....+..+...+.
T Consensus 140 ~lQ~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~ 219 (546)
T PF07888_consen 140 LLQNQLEECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEAR 219 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666666666666666666666666666666666666666555555555554444332 2233445556666
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 020809 116 ARADELEKQIDNLKKESEKQQ 136 (321)
Q Consensus 116 ~RireL~k~Ie~Lk~ele~~~ 136 (321)
.||+.|+..|..+.....+..
T Consensus 220 ~ri~~LEedi~~l~qk~~E~e 240 (546)
T PF07888_consen 220 QRIRELEEDIKTLTQKEKEQE 240 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 677777777666665554333
No 25
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=97.56 E-value=0.024 Score=52.92 Aligned_cols=113 Identities=27% Similarity=0.401 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHH
Q 020809 43 LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKK-ETLNAAEQVDKAHARADEL 121 (321)
Q Consensus 43 l~~el~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~qk~-~~~~~eeq~~~~~~RireL 121 (321)
.+..+..++..+..+...+..+..++..++.++.+.+..|.+++.++..++..+...... ...+++-..+.++.|...|
T Consensus 29 ~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~l 108 (239)
T COG1579 29 IRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINSL 108 (239)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666666666666666666666666666666666666666666665333222 2344555555566666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 122 EKQIDNLKKESEKQQKEKEALEARAIEAEKKISD 155 (321)
Q Consensus 122 ~k~Ie~Lk~ele~~~~kk~~LEa~a~e~ekk~~e 155 (321)
+.+|..+...++....++..+..+....+..+.+
T Consensus 109 e~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e 142 (239)
T COG1579 109 EDELAELMEEIEKLEKEIEDLKERLERLEKNLAE 142 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6665555555555554444444444444443333
No 26
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.53 E-value=0.18 Score=57.61 Aligned_cols=59 Identities=10% Similarity=-0.064 Sum_probs=30.9
Q ss_pred chhHHHHHHHHHHHHHHhHHHhhCcchHHHHHHHHHHHHHhhccccchhHHhhhhhhhhh
Q 020809 210 LPPWLAVHLLQCQSLIETHWNAHGKPAMDVAIQKALEKKAQAGKWVQPHVETIKAKWIPA 269 (321)
Q Consensus 210 l~Pwla~~~~~~~~~~~~~~~~hg~p~~~~~~~~~~~k~~~~~~~~~ph~~~~~~k~~p~ 269 (321)
-.|-+...+..+....+.+...++...= .+-+.-..=..--..|-+|....+..+....
T Consensus 1048 ~~~~~~~e~~~l~~~~~~l~~~~a~l~g-~~k~le~qi~~l~~eL~e~~yk~a~~ryrka 1106 (1311)
T TIGR00606 1048 QVLQMKQEHQKLEENIDLIKRNHVLALG-RQKGYEKEIKHFKKELREPQFRDAEEKYREM 1106 (1311)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcchHHHHHHHHHHHH
Confidence 3477888888888877777766554221 1111111111122334456666666665544
No 27
>PRK09039 hypothetical protein; Validated
Probab=97.49 E-value=0.06 Score=52.82 Aligned_cols=141 Identities=24% Similarity=0.273 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 020809 43 LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELE 122 (321)
Q Consensus 43 l~~el~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~qk~~~~~~eeq~~~~~~RireL~ 122 (321)
+..++...+.++..|+++|.++..-+.--......++..+.++..++..++..-..++..- .........++.|+..|.
T Consensus 44 Ls~~i~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~-~~~~~~~~~~~~~~~~l~ 122 (343)
T PRK09039 44 LSREISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALL-AELAGAGAAAEGRAGELA 122 (343)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhhhcchHHHHHHHHH
Confidence 5666666677777777776666666655556666666666666666666655555554320 000011112333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 123 KQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVA 184 (321)
Q Consensus 123 k~Ie~Lk~ele~~~~kk~~LEa~a~e~ekk~~el~~~le~Lek~~~Eqk~~l~elE~~lq~~ 184 (321)
..+...+....+.+.+...|......+..++..++..++..+....+++.+|+.+...+..+
T Consensus 123 ~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a 184 (343)
T PRK09039 123 QELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVA 184 (343)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333344444444444444444444444444444433
No 28
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=97.48 E-value=0.083 Score=55.14 Aligned_cols=124 Identities=16% Similarity=0.189 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 020809 118 ADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATS 197 (321)
Q Consensus 118 ireL~k~Ie~Lk~ele~~~~kk~~LEa~a~e~ekk~~el~~~le~Lek~~~Eqk~~l~elE~~lq~~Eeei~kl~~ea~~ 197 (321)
++.+++++..+.+..................++..+.++...++.+++...+....+..+......+...+.++......
T Consensus 350 ~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ 429 (569)
T PRK04778 350 VRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHE 429 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555554444444444445566677777777888888888888888888888888888887777666665
Q ss_pred hhhhhhhhhccCchhHHHHHHHHHHHHHHhHHHhh--CcchHHHHH
Q 020809 198 RSKELTEVHSAWLPPWLAVHLLQCQSLIETHWNAH--GKPAMDVAI 241 (321)
Q Consensus 198 ~a~ql~e~~g~~l~Pwla~~~~~~~~~~~~~~~~h--g~p~~~~~~ 241 (321)
..+.+...+---+|..+-..+......+......- |..=|+.+.
T Consensus 430 ikr~l~k~~lpgip~~y~~~~~~~~~~i~~l~~~L~~g~VNm~ai~ 475 (569)
T PRK04778 430 IKRYLEKSNLPGLPEDYLEMFFEVSDEIEALAEELEEKPINMEAVN 475 (569)
T ss_pred HHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHH
Confidence 55545443312255555444444443333332221 554444443
No 29
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.44 E-value=0.05 Score=55.85 Aligned_cols=38 Identities=18% Similarity=0.126 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 157 SAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFE 194 (321)
Q Consensus 157 ~~~le~Lek~~~Eqk~~l~elE~~lq~~Eeei~kl~~e 194 (321)
...+..++....+....+..+......++.++.+++..
T Consensus 336 ~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~ 373 (562)
T PHA02562 336 SKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAE 373 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33333333344444444444444444444444444333
No 30
>PRK03918 chromosome segregation protein; Provisional
Probab=97.39 E-value=0.04 Score=59.72 Aligned_cols=39 Identities=28% Similarity=0.457 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 141 ALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTER 179 (321)
Q Consensus 141 ~LEa~a~e~ekk~~el~~~le~Lek~~~Eqk~~l~elE~ 179 (321)
.++.....++..+.++...+..++.........+..++.
T Consensus 663 ~l~~~~~~l~~~l~~l~~~~~~l~~~i~~l~~~i~~~~~ 701 (880)
T PRK03918 663 ELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKE 701 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444433
No 31
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.39 E-value=0.091 Score=58.15 Aligned_cols=167 Identities=21% Similarity=0.224 Sum_probs=75.8
Q ss_pred HHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 55 RSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKK---ETLNAAEQVDKAHARADELEKQIDNLKKE 131 (321)
Q Consensus 55 ~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~qk~---~~~~~eeq~~~~~~RireL~k~Ie~Lk~e 131 (321)
..+.+.+..+.++|.....++.++++....-+..|..++.+|+.++.. ....+++....++.+-..+...+..++++
T Consensus 408 K~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~~~~~e~~~~eke 487 (1293)
T KOG0996|consen 408 KRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELDEILDSLKQETEGIREEIEKLEKE 487 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Confidence 333344444444444444444444444444555666666666666443 22344555555555444444444444444
Q ss_pred HHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 020809 132 SEKQQKEK--------------EALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATS 197 (321)
Q Consensus 132 le~~~~kk--------------~~LEa~a~e~ekk~~el~~~le~Lek~~~Eqk~~l~elE~~lq~~Eeei~kl~~ea~~ 197 (321)
+..-..+. ..|..+.....+++.++...+..+.....+-+..+..+...+.....++.....+...
T Consensus 488 l~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~ 567 (1293)
T KOG0996|consen 488 LMPLLKQVNEARSELDVAESELDILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQELKEKEKELPK 567 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHH
Confidence 44333333 3333333333344444555555544445555555555444444444444443333222
Q ss_pred hhhhhhhhhccCchhHHHHHHHHHHHHHH
Q 020809 198 RSKELTEVHSAWLPPWLAVHLLQCQSLIE 226 (321)
Q Consensus 198 ~a~ql~e~~g~~l~Pwla~~~~~~~~~~~ 226 (321)
..+ +.+ -+-+.+...-.+..+..+
T Consensus 568 ~~~---e~~--~~~~~~~~~rqrveE~ks 591 (1293)
T KOG0996|consen 568 LRK---EER--NLKSQLNKLRQRVEEAKS 591 (1293)
T ss_pred HHH---HHH--HHHHHHHHHHHHHHHHHH
Confidence 211 111 244555555555555544
No 32
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.35 E-value=0.12 Score=59.09 Aligned_cols=57 Identities=12% Similarity=0.212 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHH--------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 86 SERIVSLQKELSSLQKK--------ETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEAL 142 (321)
Q Consensus 86 ~~~I~~Lq~eI~~~qk~--------~~~~~eeq~~~~~~RireL~k~Ie~Lk~ele~~~~kk~~L 142 (321)
..++..++.+|.++..+ ...+++..+...+..++.|...++.+..+.+..+.++..|
T Consensus 798 ~~ei~~l~~qie~l~~~l~~~~~~~s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~L 862 (1311)
T TIGR00606 798 QMELKDVERKIAQQAAKLQGSDLDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHL 862 (1311)
T ss_pred HHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555554433 1244566666666666666555555555555555444444
No 33
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=97.34 E-value=0.16 Score=56.27 Aligned_cols=159 Identities=21% Similarity=0.259 Sum_probs=113.8
Q ss_pred CCchHHHHHHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 020809 39 DSSPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARA 118 (321)
Q Consensus 39 ~~~~l~~el~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~qk~~~~~~eeq~~~~~~Ri 118 (321)
-+..|+++-...+++-..++...+.+..-|.+.|.....++.-|+.....|...+..|+..+.+ ....|.....+..|+
T Consensus 1543 ra~~L~s~A~~a~~~A~~v~~~ae~V~eaL~~Ad~Aq~~a~~ai~~a~~~~~~a~~~l~kv~~~-t~~aE~~~~~a~q~~ 1621 (1758)
T KOG0994|consen 1543 RAENLQSEAERARSRAEDVKGQAEDVVEALEEADVAQGEAQDAIQGADRDIRLAQQLLAKVQEE-TAAAEKLATSATQQL 1621 (1758)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 3456677777788888888889999999999999999999999999999999999999998774 466788888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 020809 119 DELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSR 198 (321)
Q Consensus 119 reL~k~Ie~Lk~ele~~~~kk~~LEa~a~e~ekk~~el~~~le~Lek~~~Eqk~~l~elE~~lq~~Eeei~kl~~ea~~~ 198 (321)
++|...++.|+.....+-......+.-+..+...-..++..++.+++..+.....+.+--.....+.+....+..++.++
T Consensus 1622 ~eL~~~~e~lk~~~~qns~~A~~a~~~a~sa~~~A~~a~q~~~~lq~~~~~~~~l~~~r~~g~~~ar~rAe~L~~eA~~L 1701 (1758)
T KOG0994|consen 1622 GELETRMEELKHKAAQNSAEAKQAEKTAGSAKEQALSAEQGLEILQKYYELVDRLLEKRMEGSQAARERAEQLRTEAEKL 1701 (1758)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHH
Confidence 99999999999888777766555555555555444455555555555555555555444444444444444444444433
No 34
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=97.27 E-value=0.077 Score=61.97 Aligned_cols=57 Identities=28% Similarity=0.410 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 125 IDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERAL 181 (321)
Q Consensus 125 Ie~Lk~ele~~~~kk~~LEa~a~e~ekk~~el~~~le~Lek~~~Eqk~~l~elE~~l 181 (321)
+..++..++.....+...+.....+..++.+.+..+..+++.+.+....|.++...+
T Consensus 1057 ~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~l 1113 (1930)
T KOG0161|consen 1057 IEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEEL 1113 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444445555555555555555555555555555555544443
No 35
>PRK04863 mukB cell division protein MukB; Provisional
Probab=97.26 E-value=0.31 Score=56.33 Aligned_cols=38 Identities=18% Similarity=0.222 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHH
Q 020809 44 KIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKA 81 (321)
Q Consensus 44 ~~el~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~ 81 (321)
+.+..+...++...+..+..+...+.++...+..++.+
T Consensus 292 r~rk~eA~kkLe~tE~nL~rI~diL~ELe~rL~kLEkQ 329 (1486)
T PRK04863 292 RRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQD 329 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444433333333333333333
No 36
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=97.25 E-value=0.13 Score=50.87 Aligned_cols=28 Identities=18% Similarity=0.240 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 164 QKINDEQKSKIRKTERALKVAEEEMMRA 191 (321)
Q Consensus 164 ek~~~Eqk~~l~elE~~lq~~Eeei~kl 191 (321)
.+...+++.+++.+|.+...+|.+..++
T Consensus 251 ~e~I~~re~~lq~lEt~q~~leqeva~l 278 (499)
T COG4372 251 AEQIRERERQLQRLETAQARLEQEVAQL 278 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444
No 37
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=97.13 E-value=0.28 Score=55.59 Aligned_cols=98 Identities=21% Similarity=0.350 Sum_probs=54.6
Q ss_pred CCchHHHHHHHHHHHHHHHHHhHHHHHHhhhcH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 020809 39 DSSPLKIELDQLKSKIRSLESHIDEKTQELKGK-------DEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQV 111 (321)
Q Consensus 39 ~~~~l~~el~qlk~ki~~Les~i~e~~~eLk~k-------d~~I~q~ek~i~e~~~~I~~Lq~eI~~~qk~~~~~~eeq~ 111 (321)
+-..++.+++.+...+..+....+++.+.|... ...+..++..+.....++..+.++-..++.+.....+++.
T Consensus 601 ~ee~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 680 (1201)
T PF12128_consen 601 SEEELRERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIEEAKEERK 680 (1201)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334566666666666655555555554444444 4444444444444455555555555555444445566666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 112 DKAHARADELEKQIDNLKKESEKQQ 136 (321)
Q Consensus 112 ~~~~~RireL~k~Ie~Lk~ele~~~ 136 (321)
...+.++..++..+..+..+++...
T Consensus 681 ~~~~~~l~~l~~~l~~~~~e~~~~~ 705 (1201)
T PF12128_consen 681 EQIEEQLNELEEELKQLKQELEELL 705 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666666555554
No 38
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=97.07 E-value=0.15 Score=45.24 Aligned_cols=16 Identities=44% Similarity=0.669 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 020809 117 RADELEKQIDNLKKES 132 (321)
Q Consensus 117 RireL~k~Ie~Lk~el 132 (321)
|+..++..+..+..+.
T Consensus 131 ~l~~l~~~~~~~~~e~ 146 (191)
T PF04156_consen 131 RLDSLDESIKELEKEI 146 (191)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 39
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.02 E-value=0.26 Score=51.07 Aligned_cols=50 Identities=16% Similarity=0.255 Sum_probs=21.8
Q ss_pred HHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 50 LKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSL 99 (321)
Q Consensus 50 lk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~ 99 (321)
++.++...+....++.+....+.....+++..+..++..+.....+...+
T Consensus 141 lQ~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L 190 (546)
T PF07888_consen 141 LQNQLEECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQL 190 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444444444444444444444333
No 40
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=96.99 E-value=0.41 Score=46.92 Aligned_cols=27 Identities=19% Similarity=0.388 Sum_probs=17.5
Q ss_pred CCchHHHHHHHHHHHHHHHHHhHHHHH
Q 020809 39 DSSPLKIELDQLKSKIRSLESHIDEKT 65 (321)
Q Consensus 39 ~~~~l~~el~qlk~ki~~Les~i~e~~ 65 (321)
+...+..++..++.++..++.....+.
T Consensus 75 d~~~~~~~l~~l~~~~~~l~a~~~~l~ 101 (423)
T TIGR01843 75 DATDVEADAAELESQVLRLEAEVARLR 101 (423)
T ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 455567777777777776666555433
No 41
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=96.94 E-value=0.2 Score=52.65 Aligned_cols=58 Identities=28% Similarity=0.377 Sum_probs=39.5
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 42 PLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSL 99 (321)
Q Consensus 42 ~l~~el~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~ 99 (321)
.-.+++++++.++.++...+..+..+++.+...+.++..++.+.......++.++.-.
T Consensus 325 ~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~ 382 (594)
T PF05667_consen 325 EQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLK 382 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777777777777777777777777777777776666666666666543
No 42
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.92 E-value=0.2 Score=55.64 Aligned_cols=48 Identities=15% Similarity=0.383 Sum_probs=18.3
Q ss_pred HHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 50 LKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELS 97 (321)
Q Consensus 50 lk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~ 97 (321)
++.+...+.+.......+....+..=...+..+....++|..|..+|+
T Consensus 375 ~~e~~~~~kn~~~~~k~~~~~~e~~~vk~~E~lK~~~~k~kKleke~e 422 (1293)
T KOG0996|consen 375 IKERAKELKNKFESLKKKFQDLEREDVKREEKLKRLTSKIKKLEKEIE 422 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333344444444333333333333333333333333333
No 43
>PRK01156 chromosome segregation protein; Provisional
Probab=96.92 E-value=0.45 Score=52.02 Aligned_cols=32 Identities=16% Similarity=0.295 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 151 KKISDLSAKLEKLQKINDEQKSKIRKTERALK 182 (321)
Q Consensus 151 kk~~el~~~le~Lek~~~Eqk~~l~elE~~lq 182 (321)
..+..+...++.++....+...++..+...+.
T Consensus 688 ~~l~~l~~~~~~l~~~i~~l~~~~~~l~eel~ 719 (895)
T PRK01156 688 KALDDAKANRARLESTIEILRTRINELSDRIN 719 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 33333333333333333333333333333333
No 44
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=96.89 E-value=0.12 Score=49.30 Aligned_cols=34 Identities=15% Similarity=0.145 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 156 LSAKLEKLQKINDEQKSKIRKTERALKVAEEEMM 189 (321)
Q Consensus 156 l~~~le~Lek~~~Eqk~~l~elE~~lq~~Eeei~ 189 (321)
+...+..+......+-..++.+-.-.-.++.+|.
T Consensus 267 le~el~~l~~~~~~~~~ey~~Ll~~K~~Ld~EIa 300 (312)
T PF00038_consen 267 LEEELAELREEMARQLREYQELLDVKLALDAEIA 300 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 3333333333333344444444444444444443
No 45
>PRK04863 mukB cell division protein MukB; Provisional
Probab=96.88 E-value=0.41 Score=55.35 Aligned_cols=36 Identities=6% Similarity=0.098 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHH
Q 020809 44 KIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKE 79 (321)
Q Consensus 44 ~~el~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~e 79 (321)
..+|...+.++..+...+.++..++..+..++..+.
T Consensus 299 ~kkLe~tE~nL~rI~diL~ELe~rL~kLEkQaEkA~ 334 (1486)
T PRK04863 299 RRQLAAEQYRLVEMARELAELNEAESDLEQDYQAAS 334 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444443
No 46
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=96.83 E-value=0.31 Score=47.38 Aligned_cols=54 Identities=26% Similarity=0.439 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 125 IDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTE 178 (321)
Q Consensus 125 Ie~Lk~ele~~~~kk~~LEa~a~e~ekk~~el~~~le~Lek~~~Eqk~~l~elE 178 (321)
+..++.++.....++........+++.++..++..++.+...+.+....|.+++
T Consensus 211 L~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~ 264 (325)
T PF08317_consen 211 LEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAE 264 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444333333333333333444444444444444444444444444
No 47
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.81 E-value=1.1 Score=49.23 Aligned_cols=173 Identities=18% Similarity=0.248 Sum_probs=77.1
Q ss_pred ccCCCCCCc-ccc-cCCCCchH--HHHHHHHHHHHHHHHHhHHHHHHhhhcHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q 020809 24 IQGEDVPPL-TAS-DAVDSSPL--KIELDQLKSKIRSLESHIDEKTQELKGKDEVV---AQKEKAIQDKSERIVSLQKEL 96 (321)
Q Consensus 24 ~~~~~~~~~-~~~-~~~~~~~l--~~el~qlk~ki~~Les~i~e~~~eLk~kd~~I---~q~ek~i~e~~~~I~~Lq~eI 96 (321)
+|..||.+. +.+ +..+++.+ -+.+.+++.++...++.++.++.+|..+...- ..+.++++-+..+.+-+...+
T Consensus 652 GDV~dP~GtlTGGs~~~~a~~L~~l~~l~~~~~~~~~~q~el~~le~eL~~le~~~~kf~~l~~ql~l~~~~l~l~~~r~ 731 (1174)
T KOG0933|consen 652 GDVYDPSGTLTGGSRSKGADLLRQLQKLKQAQKELRAIQKELEALERELKSLEAQSQKFRDLKQQLELKLHELALLEKRL 731 (1174)
T ss_pred CceeCCCCcccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455554 332 33343322 23466666677777777777766666654432 223333333333333333333
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 97 SSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRK 176 (321)
Q Consensus 97 ~~~qk~~~~~~eeq~~~~~~RireL~k~Ie~Lk~ele~~~~kk~~LEa~a~e~ekk~~el~~~le~Lek~~~Eqk~~l~e 176 (321)
+.+.- ..+-+....+..++.+++.+|......+..-..+...+|....+... .....+.++++.....+..+++
T Consensus 732 ~~~e~---~~~~~~~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~---~re~rlkdl~keik~~k~~~e~ 805 (1174)
T KOG0933|consen 732 EQNEF---HKLLDDLKELLEEVEESEQQIKEKERALKKCEDKISTLEKKMKDAKA---NRERRLKDLEKEIKTAKQRAEE 805 (1174)
T ss_pred hcChH---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh---hhHhHHHHHHHHHHHHHHHHHH
Confidence 32211 22222233333333333333333333333333333333333333322 2344455555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhh
Q 020809 177 TERALKVAEEEMMRAKFEATSRSKEL 202 (321)
Q Consensus 177 lE~~lq~~Eeei~kl~~ea~~~a~ql 202 (321)
....+...+.+..+++.+.....+.+
T Consensus 806 ~~~~~ek~~~e~e~l~lE~e~l~~e~ 831 (1174)
T KOG0933|consen 806 SSKELEKRENEYERLQLEHEELEKEI 831 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555444333
No 48
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=96.76 E-value=0.26 Score=51.47 Aligned_cols=141 Identities=17% Similarity=0.229 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------hhHHHHHHHHHHH
Q 020809 45 IELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKK---------ETLNAAEQVDKAH 115 (321)
Q Consensus 45 ~el~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~qk~---------~~~~~eeq~~~~~ 115 (321)
..++.+..+|..|-..+..-..-.+..+..+..+...+.....+...|..+|+.++.. .-..++++...+.
T Consensus 282 ~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le 361 (569)
T PRK04778 282 EKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLE 361 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333334444444555555555555666666655443 0223333344444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 116 ARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAE 185 (321)
Q Consensus 116 ~RireL~k~Ie~Lk~ele~~~~kk~~LEa~a~e~ekk~~el~~~le~Lek~~~Eqk~~l~elE~~lq~~E 185 (321)
.++..+...+................+..+...++....++...+..+.+.-.+-+..+..+...+..+.
T Consensus 362 ~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ik 431 (569)
T PRK04778 362 KQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIK 431 (569)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444333332222222233333333344444444444444444444444444444444444444444333
No 49
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.75 E-value=0.54 Score=50.40 Aligned_cols=98 Identities=15% Similarity=0.254 Sum_probs=66.8
Q ss_pred chHHHHHHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 020809 41 SPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADE 120 (321)
Q Consensus 41 ~~l~~el~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~qk~~~~~~eeq~~~~~~Rire 120 (321)
.-++.++..++..+....+.=.++..+|..++..=..+..+|..+..+.+.|++++..+....+.|. ..+..+++|+++
T Consensus 421 ~rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DK-q~l~~LEkrL~e 499 (697)
T PF09726_consen 421 SRLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDK-QSLQQLEKRLAE 499 (697)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 3466777778888877777777777776666666566777777777888888888877766544442 335567777777
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 020809 121 LEKQIDNLKKESEKQQKEK 139 (321)
Q Consensus 121 L~k~Ie~Lk~ele~~~~kk 139 (321)
..+.=..+++++.+.+..+
T Consensus 500 E~~~R~~lEkQL~eErk~r 518 (697)
T PF09726_consen 500 ERRQRASLEKQLQEERKAR 518 (697)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7766666666665555433
No 50
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=96.72 E-value=0.43 Score=50.22 Aligned_cols=58 Identities=12% Similarity=0.263 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 44 KIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQK 101 (321)
Q Consensus 44 ~~el~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~qk 101 (321)
..+..+-...+.+|+.+++++..++..++.++..+...+..+..++.....+...++.
T Consensus 320 ~~~~~~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~ 377 (594)
T PF05667_consen 320 EDEQEEQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEE 377 (594)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666666666666666666666665555555555555555544433
No 51
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.67 E-value=1 Score=49.39 Aligned_cols=65 Identities=18% Similarity=0.212 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh-------hhhhcc---C--chhHHHHHHHHHHHHHHhHHHhhCc
Q 020809 170 QKSKIRKTERALKVAEEEMMRAKFEATSRSKEL-------TEVHSA---W--LPPWLAVHLLQCQSLIETHWNAHGK 234 (321)
Q Consensus 170 qk~~l~elE~~lq~~Eeei~kl~~ea~~~a~ql-------~e~~g~---~--l~Pwla~~~~~~~~~~~~~~~~hg~ 234 (321)
...-|+.+......++.++..++.+..++.+++ .+.+|. + ..-.+-..++-++..-..+|.+-.+
T Consensus 402 l~~~i~~~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~ 478 (1200)
T KOG0964|consen 402 LKRGINDTKEQENILQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWREEKK 478 (1200)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444455555555555555555555444333 111111 1 2334445566667777788877443
No 52
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=96.61 E-value=0.69 Score=52.53 Aligned_cols=96 Identities=15% Similarity=0.304 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH--
Q 020809 43 LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADE-- 120 (321)
Q Consensus 43 l~~el~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~qk~~~~~~eeq~~~~~~Rire-- 120 (321)
+...-++++.++..++..+........+++..|....+.++....++.....++...+.. ...+......++.++..
T Consensus 598 ~~~~ee~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ 676 (1201)
T PF12128_consen 598 YAASEEELRERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQD-LQRLKNEREQLKQEIEEAK 676 (1201)
T ss_pred hhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHH
Confidence 444455777778888888887777777777777777777777777777777766666442 22222222333333322
Q ss_pred ------HHHHHHHHHHHHHHHHHHH
Q 020809 121 ------LEKQIDNLKKESEKQQKEK 139 (321)
Q Consensus 121 ------L~k~Ie~Lk~ele~~~~kk 139 (321)
++..+..+..++.....++
T Consensus 677 ~~~~~~~~~~l~~l~~~l~~~~~e~ 701 (1201)
T PF12128_consen 677 EERKEQIEEQLNELEEELKQLKQEL 701 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444666666665555544
No 53
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=96.60 E-value=0.7 Score=44.03 Aligned_cols=58 Identities=21% Similarity=0.296 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 43 LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQ 100 (321)
Q Consensus 43 l~~el~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~q 100 (321)
+..++.+++..|..+......+.-++..+...++.....+.........++++|..+.
T Consensus 52 ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lr 109 (312)
T PF00038_consen 52 YEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLR 109 (312)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 4455555555555555555555555555555555544444444444444444444443
No 54
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=96.58 E-value=0.85 Score=44.72 Aligned_cols=20 Identities=20% Similarity=0.418 Sum_probs=10.9
Q ss_pred CCchHHHHHHHHHHHHHHHH
Q 020809 39 DSSPLKIELDQLKSKIRSLE 58 (321)
Q Consensus 39 ~~~~l~~el~qlk~ki~~Le 58 (321)
+...++.++..++.++..++
T Consensus 82 ~l~~l~~~~~~l~a~~~~l~ 101 (423)
T TIGR01843 82 DAAELESQVLRLEAEVARLR 101 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44555666665555554443
No 55
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=96.48 E-value=0.75 Score=49.83 Aligned_cols=32 Identities=22% Similarity=0.356 Sum_probs=11.7
Q ss_pred HHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHH
Q 020809 57 LESHIDEKTQELKGKDEVVAQKEKAIQDKSER 88 (321)
Q Consensus 57 Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~ 88 (321)
|++.++.+..++..+...|++.+..+..++..
T Consensus 341 Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE 372 (775)
T PF10174_consen 341 LQSDVEALRFRLEEKNSQLEKKQAQIEKLQEE 372 (775)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333
No 56
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=96.47 E-value=0.076 Score=47.81 Aligned_cols=101 Identities=24% Similarity=0.316 Sum_probs=26.3
Q ss_pred chHHHHHHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 020809 41 SPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADE 120 (321)
Q Consensus 41 ~~l~~el~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~qk~~~~~~eeq~~~~~~Rire 120 (321)
.++...+-.++..+.++.....+..++|..+...+..++..+......|..|..++..++. +..++++ .+++
T Consensus 70 ~~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~-~~~~l~~-------~l~e 141 (194)
T PF08614_consen 70 SSLEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEE-KIKDLEE-------ELKE 141 (194)
T ss_dssp --------------------------------------------HHHHHHHHHHHHHHHHH-HHHHHHH-------HHHH
T ss_pred cccccccccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHH-HHHHHHH-------HHHH
Confidence 3444555556666666666666666666666666666666666666666666666555533 1122222 4444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 121 LEKQIDNLKKESEKQQKEKEALEARAIEA 149 (321)
Q Consensus 121 L~k~Ie~Lk~ele~~~~kk~~LEa~a~e~ 149 (321)
+++.++.++.++...+-....+|.+...+
T Consensus 142 k~k~~e~l~DE~~~L~l~~~~~e~k~~~l 170 (194)
T PF08614_consen 142 KNKANEILQDELQALQLQLNMLEEKLRKL 170 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555444444444444433333
No 57
>PRK11281 hypothetical protein; Provisional
Probab=96.44 E-value=0.6 Score=52.50 Aligned_cols=21 Identities=19% Similarity=0.393 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 020809 170 QKSKIRKTERALKVAEEEMMR 190 (321)
Q Consensus 170 qk~~l~elE~~lq~~Eeei~k 190 (321)
....++.++...+.+++.+..
T Consensus 232 ~~~~~~~~~~~~~~lq~~in~ 252 (1113)
T PRK11281 232 LTARIQRLEHQLQLLQEAINS 252 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444443
No 58
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=96.42 E-value=0.54 Score=40.59 Aligned_cols=52 Identities=25% Similarity=0.288 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 45 IELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKEL 96 (321)
Q Consensus 45 ~el~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI 96 (321)
.+|...+++...|+..+..+..+|.........+..........|..|+.+|
T Consensus 10 ~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el 61 (140)
T PF10473_consen 10 EKLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEEL 61 (140)
T ss_pred HHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444443333333333333333333333333333
No 59
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=96.40 E-value=0.74 Score=41.91 Aligned_cols=100 Identities=28% Similarity=0.353 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 020809 43 LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELE 122 (321)
Q Consensus 43 l~~el~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~qk~~~~~~eeq~~~~~~RireL~ 122 (321)
+..++.+++.+....+..+.++..+.+.+.+-|..++.+..++..++...+..- .....++.|+..++
T Consensus 32 LKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK------------~~L~~~k~rl~~~e 99 (201)
T PF13851_consen 32 LKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDK------------QSLQNLKARLKELE 99 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHH
Confidence 344445555555555555555555555555555444444444444433322221 22334666888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 123 KQIDNLKKESEKQQKEKEALEARAIEAEKKIS 154 (321)
Q Consensus 123 k~Ie~Lk~ele~~~~kk~~LEa~a~e~ekk~~ 154 (321)
+++..|+-+-+....+...++..+.++..+..
T Consensus 100 k~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~ 131 (201)
T PF13851_consen 100 KELKDLKWEHEVLEQRFEKLEQERDELYRKFE 131 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888877777777777777776544
No 60
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=96.38 E-value=0.43 Score=39.21 Aligned_cols=55 Identities=29% Similarity=0.407 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 108 AEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEK 162 (321)
Q Consensus 108 eeq~~~~~~RireL~k~Ie~Lk~ele~~~~kk~~LEa~a~e~ekk~~el~~~le~ 162 (321)
..+......|+++|+..|..+...++..+.-+-.|+.+....++-.+.++-++..
T Consensus 50 ~~q~~s~~qr~~eLqaki~ea~~~le~eK~ak~~l~~r~~k~~~dka~lel~l~e 104 (107)
T PF09304_consen 50 QAQNASRNQRIAELQAKIDEARRNLEDEKQAKLELESRLLKAQKDKAILELKLAE 104 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHh
Confidence 3344455668888999999988888887766667888888877777766666554
No 61
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=96.34 E-value=0.23 Score=52.51 Aligned_cols=124 Identities=19% Similarity=0.357 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHHHHH
Q 020809 49 QLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKET-LNAAEQVDKAHARADELEKQIDN 127 (321)
Q Consensus 49 qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~qk~~~-~~~eeq~~~~~~RireL~k~Ie~ 127 (321)
.++.....++..+..++.++..+..+.......+.+++..|..|.+.+........ ..-.+.-..++.+++.|.++++.
T Consensus 19 ~lk~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~~~~pa~pse~E~~Lq~E~~~L~kElE~ 98 (617)
T PF15070_consen 19 QLKEESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPPPPEPPAGPSEVEQQLQAEAEHLRKELES 98 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccccccchHHHHHHHHHHHHHHHHHHH
Confidence 34555566777777888888888888888888888888888888877765432200 00001112344455555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 128 LKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKS 172 (321)
Q Consensus 128 Lk~ele~~~~kk~~LEa~a~e~ekk~~el~~~le~Lek~~~Eqk~ 172 (321)
|..++..+..+...|-....+.+.++.+++..+..+.....++..
T Consensus 99 L~~qlqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~k 143 (617)
T PF15070_consen 99 LEEQLQAQVENNEQLSRLNQEQEERLAELEEELERLQEQQEDRQK 143 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555544444333333333444444444444444443333333
No 62
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=96.33 E-value=1.1 Score=43.17 Aligned_cols=58 Identities=17% Similarity=0.264 Sum_probs=32.9
Q ss_pred CchHHHHHHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 40 SSPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELS 97 (321)
Q Consensus 40 ~~~l~~el~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~ 97 (321)
.+.++.+..++..++.++.++.++++.++.++...-++....++++-..+..+-..++
T Consensus 43 Rdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~~~l~e~~~ 100 (294)
T COG1340 43 RDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQELRKEYRELKEKRN 100 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445555566666666666666666666666665555555555555555444444444
No 63
>PRK01156 chromosome segregation protein; Provisional
Probab=96.31 E-value=1.3 Score=48.54 Aligned_cols=61 Identities=25% Similarity=0.319 Sum_probs=30.0
Q ss_pred CCchHHHHHHHHHHHHHHHHHhHHHH---HHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 39 DSSPLKIELDQLKSKIRSLESHIDEK---TQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSL 99 (321)
Q Consensus 39 ~~~~l~~el~qlk~ki~~Les~i~e~---~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~ 99 (321)
+...+..-.+.++..+..++..++.+ ...+......|...+..+.++...+..+..++..+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~ei~~le~~~~~l~~~e~eL~~~~~~i~el~~~~~~l~~~i~~~ 223 (895)
T PRK01156 160 EINSLERNYDKLKDVIDMLRAEISNIDYLEEKLKSSNLELENIKKQIADDEKSHSITLKEIERL 223 (895)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566555566666666555544333 23334444444444444444444444444444333
No 64
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=96.31 E-value=1.4 Score=47.34 Aligned_cols=146 Identities=20% Similarity=0.303 Sum_probs=104.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hh-HHHH------------
Q 020809 45 IELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKK---ET-LNAA------------ 108 (321)
Q Consensus 45 ~el~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~qk~---~~-~~~e------------ 108 (321)
.++..+++++.+.+.+...+...|.+....++..+..+.+....|..|-..++.+..- ++ ....
T Consensus 265 ~EiqKL~qQL~qve~EK~~L~~~L~e~Q~qLe~a~~als~q~eki~~L~e~l~aL~~l~~~ke~~~~~d~~~~~~s~~d~ 344 (717)
T PF09730_consen 265 SEIQKLKQQLLQVEREKSSLLSNLQESQKQLEHAQGALSEQQEKINRLTEQLDALRKLQEDKEQQSAEDSEKERDSHEDG 344 (717)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhhhhccccccccccc
Confidence 4678889999999999999999999999999999999999999999999998888661 10 0000
Q ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 109 -------EQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEA----EKKISDLSAKLEKLQKINDEQKSKIRKT 177 (321)
Q Consensus 109 -------eq~~~~~~RireL~k~Ie~Lk~ele~~~~kk~~LEa~a~e~----ekk~~el~~~le~Lek~~~Eqk~~l~el 177 (321)
.....++.+.+....++..|+.++...+.+...++.+.... ...+..+..++..+++...+-...+..+
T Consensus 345 ~~ye~Di~~~eiLe~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~~~~~ek~~~~~e~q~L~ekl~~lek~~re~qeri~~L 424 (717)
T PF09730_consen 345 DYYEVDINGLEILECKYKVAVSEVIQLKAELKALKSKYNELEERYKQEKDRLESEVQNLKEKLMSLEKSSREDQERISEL 424 (717)
T ss_pred chhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 01234566777777778888888888877776666655443 3455667777777777666666666666
Q ss_pred HHHHHHHHHHHHH
Q 020809 178 ERALKVAEEEMMR 190 (321)
Q Consensus 178 E~~lq~~Eeei~k 190 (321)
+.++..+-..-..
T Consensus 425 E~ELr~l~~~A~E 437 (717)
T PF09730_consen 425 EKELRALSKLAGE 437 (717)
T ss_pred HHHHHHHHHHHHh
Confidence 6666555444443
No 65
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.28 E-value=0.87 Score=48.88 Aligned_cols=62 Identities=21% Similarity=0.309 Sum_probs=40.5
Q ss_pred chHHHHHHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 41 SPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKK 102 (321)
Q Consensus 41 ~~l~~el~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~qk~ 102 (321)
..++.+++.|+.++.+|...+-++.-.|-.....|+...+.+.-.-++|.+|+.+|.+.|..
T Consensus 440 ~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~k 501 (1118)
T KOG1029|consen 440 KQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEK 501 (1118)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666666666666666666666666666667777777777776654
No 66
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=96.27 E-value=1.6 Score=45.17 Aligned_cols=23 Identities=17% Similarity=0.426 Sum_probs=10.6
Q ss_pred CCchHHHHHHHHHHHHHHHHHhH
Q 020809 39 DSSPLKIELDQLKSKIRSLESHI 61 (321)
Q Consensus 39 ~~~~l~~el~qlk~ki~~Les~i 61 (321)
++..+...+.+.+.++..|...+
T Consensus 212 ~~~~~~~~leeae~~l~~L~~e~ 234 (522)
T PF05701_consen 212 DAEEWEKELEEAEEELEELKEEL 234 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444555555554444444
No 67
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=96.25 E-value=0.91 Score=44.13 Aligned_cols=47 Identities=21% Similarity=0.360 Sum_probs=26.6
Q ss_pred HHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 55 RSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQK 101 (321)
Q Consensus 55 ~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~qk 101 (321)
..|+...+.+..+...+...+..+...+..+...-+.|..++..++.
T Consensus 152 ~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~ 198 (325)
T PF08317_consen 152 EGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQ 198 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555555555555566666655544
No 68
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=96.24 E-value=0.51 Score=41.88 Aligned_cols=19 Identities=16% Similarity=0.288 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 020809 72 DEVVAQKEKAIQDKSERIV 90 (321)
Q Consensus 72 d~~I~q~ek~i~e~~~~I~ 90 (321)
+..+...++.+........
T Consensus 101 ~~~~~~~~~~l~~~~~~~~ 119 (191)
T PF04156_consen 101 QERIQELESELEKLKEDLQ 119 (191)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 69
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=96.19 E-value=1 Score=52.44 Aligned_cols=54 Identities=20% Similarity=0.240 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 45 IELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSS 98 (321)
Q Consensus 45 ~el~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~ 98 (321)
.+++..-.++.++...++.++.++-.++..+.++...++.....+..|+.+.+.
T Consensus 1236 ee~~~~~~k~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~ 1289 (1822)
T KOG4674|consen 1236 EENEANLEKIQELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDR 1289 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444444444444444444444444333
No 70
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=96.14 E-value=1.4 Score=42.50 Aligned_cols=43 Identities=28% Similarity=0.317 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 020809 156 LSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSR 198 (321)
Q Consensus 156 l~~~le~Lek~~~Eqk~~l~elE~~lq~~Eeei~kl~~ea~~~ 198 (321)
+.+....+.....+....+..+-...+..-.+|.++..++...
T Consensus 163 l~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~ 205 (294)
T COG1340 163 LKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADEL 205 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444444444433333
No 71
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=96.12 E-value=1 Score=40.80 Aligned_cols=35 Identities=23% Similarity=0.253 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 152 KISDLSAKLEKLQKINDEQKSKIRKTERALKVAEE 186 (321)
Q Consensus 152 k~~el~~~le~Lek~~~Eqk~~l~elE~~lq~~Ee 186 (321)
.+.+.+...+.+.....++..-.+++......+|+
T Consensus 152 ~l~e~t~~i~eL~~~ieEy~~~teeLR~e~s~LEe 186 (193)
T PF14662_consen 152 ILSERTQQIEELKKTIEEYRSITEELRLEKSRLEE 186 (193)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444433333333
No 72
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=96.12 E-value=0.075 Score=49.64 Aligned_cols=57 Identities=14% Similarity=0.288 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 43 LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSL 99 (321)
Q Consensus 43 l~~el~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~ 99 (321)
.+.++++...+...|...+..+..++..+..+.++++..+...+.+|..|+.+|+..
T Consensus 40 sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~ 96 (251)
T PF11932_consen 40 SQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQI 96 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555555555555555555555555555444444
No 73
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=96.08 E-value=0.69 Score=42.88 Aligned_cols=133 Identities=17% Similarity=0.267 Sum_probs=98.4
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHH
Q 020809 37 AVDSSPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKE-TLNAAEQVDKAH 115 (321)
Q Consensus 37 ~~~~~~l~~el~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~qk~~-~~~~eeq~~~~~ 115 (321)
.-....+++.|.+....+..++..+...+..+.........+...|.+....+..+...+......+ ..-.+.+...+.
T Consensus 77 ~~s~~eLeq~l~~~~~~L~~~q~~l~~~~~~l~~~~~~p~~aq~~l~~~~~~l~ei~~~L~~~~~~~~~~l~~a~~~~l~ 156 (240)
T PF12795_consen 77 NLSLEELEQRLSQEQAQLQELQEQLQQENSQLIEIQTRPERAQQQLSEARQRLQEIRNQLQNLPPNGESPLSEAQRWLLQ 156 (240)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhccCCCCcchhhHHHHHHHH
Confidence 3477788888888888888888888888888888888888888888888888888888777653323 344566777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 116 ARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDE 169 (321)
Q Consensus 116 ~RireL~k~Ie~Lk~ele~~~~kk~~LEa~a~e~ekk~~el~~~le~Lek~~~E 169 (321)
++...|+.++.-++.++........-+..++.....++..+...+..|+.....
T Consensus 157 ae~~~l~~~~~~le~el~s~~~rq~L~~~qrdl~~~~~~~l~~~l~~Lq~~ln~ 210 (240)
T PF12795_consen 157 AELAALEAQIEMLEQELLSNNNRQELLQLQRDLLKARIQRLQQQLQALQNLLNQ 210 (240)
T ss_pred HHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777776666666666666666666666666666554443
No 74
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.07 E-value=3.1 Score=46.00 Aligned_cols=14 Identities=29% Similarity=0.612 Sum_probs=6.4
Q ss_pred HHHHHHHhhccccc
Q 020809 243 KALEKKAQAGKWVQ 256 (321)
Q Consensus 243 ~~~~k~~~~~~~~~ 256 (321)
+..++...=..|..
T Consensus 927 k~v~~l~~k~~wi~ 940 (1174)
T KOG0933|consen 927 KEVEKLLKKHEWIG 940 (1174)
T ss_pred HHHHHHHHhccchh
Confidence 33444444455554
No 75
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=96.07 E-value=0.76 Score=38.88 Aligned_cols=52 Identities=23% Similarity=0.403 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 112 DKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKI 166 (321)
Q Consensus 112 ~~~~~RireL~k~Ie~Lk~ele~~~~kk~~LEa~a~e~ekk~~el~~~le~Lek~ 166 (321)
..++..+..|+..++..+..+...+ ..++.+...+++.+.++...+++|...
T Consensus 69 ~~~~~~~~~l~~~~~~a~~~l~~~e---~sw~~qk~~le~e~~~~~~r~~dL~~Q 120 (132)
T PF07926_consen 69 QELQQEINELKAEAESAKAELEESE---ASWEEQKEQLEKELSELEQRIEDLNEQ 120 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444333333 444444555555555555555544443
No 76
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=96.05 E-value=1.8 Score=43.14 Aligned_cols=33 Identities=30% Similarity=0.419 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 120 ELEKQIDNLKKESEKQQKEKEALEARAIEAEKK 152 (321)
Q Consensus 120 eL~k~Ie~Lk~ele~~~~kk~~LEa~a~e~ekk 152 (321)
.|+.++.+|+..-+.+..+-..|-.+++.++.+
T Consensus 183 Qlk~~~~~L~~r~~~ieQ~~~~la~r~~a~q~r 215 (499)
T COG4372 183 QLKSQVLDLKLRSAQIEQEAQNLATRANAAQAR 215 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555544444444444455555544443
No 77
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=96.03 E-value=0.18 Score=45.36 Aligned_cols=60 Identities=20% Similarity=0.343 Sum_probs=11.2
Q ss_pred CchHHHHHHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 40 SSPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSL 99 (321)
Q Consensus 40 ~~~l~~el~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~ 99 (321)
...++.++.++.....++...+...+.++..++..+......|..+...+..|+.+|..+
T Consensus 76 ~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l 135 (194)
T PF08614_consen 76 LAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDL 135 (194)
T ss_dssp --------------------------------------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455555555555555555555555555555555555555555555555555444
No 78
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=95.97 E-value=3.1 Score=45.09 Aligned_cols=19 Identities=37% Similarity=0.372 Sum_probs=13.3
Q ss_pred hHHHHHHHHHHHHHhhccc
Q 020809 236 AMDVAIQKALEKKAQAGKW 254 (321)
Q Consensus 236 ~~~~~~~~~~~k~~~~~~~ 254 (321)
++.+-++.|.+|....++.
T Consensus 414 ~~kneL~~a~ekld~mgth 432 (1265)
T KOG0976|consen 414 AAKNELQEALEKLDLMGTH 432 (1265)
T ss_pred HHHHHHHHHHHHHHHHhHH
Confidence 3566788888887766654
No 79
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.97 E-value=0.66 Score=49.79 Aligned_cols=56 Identities=7% Similarity=0.125 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 45 IELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQ 100 (321)
Q Consensus 45 ~el~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~q 100 (321)
.+++--+.++.++..+...-...+--+.....+++.++..+..+++.|...|-+..
T Consensus 409 RqlewErar~qem~~Qk~reqe~iv~~nak~~ql~~eletLn~k~qqls~kl~Dvr 464 (1118)
T KOG1029|consen 409 RQLEWERARRQEMLNQKNREQEWIVYLNAKKKQLQQELETLNFKLQQLSGKLQDVR 464 (1118)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhe
Confidence 33444445556666665555555555666666666666666666666666555443
No 80
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=95.96 E-value=1.5 Score=45.45 Aligned_cols=133 Identities=22% Similarity=0.297 Sum_probs=55.6
Q ss_pred HHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Q 020809 58 ESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEK--- 134 (321)
Q Consensus 58 es~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~qk~~~~~~eeq~~~~~~RireL~k~Ie~Lk~ele~--- 134 (321)
...+..+..+|......|.....++..+...+..|.++|...+. ....+.++...+..-|..|+.++...+.+++.
T Consensus 280 ~~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~-el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~ 358 (522)
T PF05701_consen 280 QSSLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKE-ELERLKEREKEASSEVSSLEAELNKTRSELEAAKA 358 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHh
Confidence 33344444444444444444444444444444444444433322 22222333333333333344443333333322
Q ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 135 -----------QQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRA 191 (321)
Q Consensus 135 -----------~~~kk~~LEa~a~e~ekk~~el~~~le~Lek~~~Eqk~~l~elE~~lq~~Eeei~kl 191 (321)
+...++.+-.....+..........+..+.......+..+..++..+..+..++...
T Consensus 359 ~e~~~k~~~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~ke~eaa 426 (522)
T PF05701_consen 359 EEEKAKEAMSELPKALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKAAIKTAEERLEAALKEAEAA 426 (522)
T ss_pred hhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222223333333333334444444444444444555555555555555555555544
No 81
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=95.92 E-value=2.3 Score=43.25 Aligned_cols=57 Identities=9% Similarity=0.147 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHhh--------hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 44 KIELDQLKSKIRSLESHIDEKTQEL--------KGKDEVVAQKEKAIQDKSERIVSLQKELSSLQ 100 (321)
Q Consensus 44 ~~el~qlk~ki~~Les~i~e~~~eL--------k~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~q 100 (321)
+.++.+++.++.+.+..+.....+- ......|..++..+...+.++..++..++.++
T Consensus 167 ~~ql~~~~~~L~~ae~~l~~f~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~l~~~~a~~~~l~ 231 (498)
T TIGR03007 167 DEQIKTYEKKLEAAENRLKAFKQENGGILPDQEGDYYSEISEAQEELEAARLELNEAIAQRDALK 231 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666655555555432211 11233444444444444444444444444443
No 82
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=95.91 E-value=1.3 Score=40.22 Aligned_cols=133 Identities=17% Similarity=0.274 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhhhcHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 020809 45 IELDQLKSKIRSLESHIDEKTQELKGKDE-------VVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHAR 117 (321)
Q Consensus 45 ~el~qlk~ki~~Les~i~e~~~eLk~kd~-------~I~q~ek~i~e~~~~I~~Lq~eI~~~qk~~~~~~eeq~~~~~~R 117 (321)
-++.+++..+.+++..++++..+-+-+.. .|+..+..=++++.-|+.-.++|..++. ......++...+..+
T Consensus 12 ~ki~~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~-~LR~~q~~~r~~~~k 90 (194)
T PF15619_consen 12 HKIKELQNELAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRE-RLRKSQEQERELERK 90 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 35566666666666666666655544433 3444444446666667777777777744 444445555555556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 118 ADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVA 184 (321)
Q Consensus 118 ireL~k~Ie~Lk~ele~~~~kk~~LEa~a~e~ekk~~el~~~le~Lek~~~Eqk~~l~elE~~lq~~ 184 (321)
+++.+.+|..+..++..... |-...+ +. ...++...+..++....+....+..+++.+...
T Consensus 91 lk~~~~el~k~~~~l~~L~~----L~~dkn-L~-eReeL~~kL~~~~~~l~~~~~ki~~Lek~leL~ 151 (194)
T PF15619_consen 91 LKDKDEELLKTKDELKHLKK----LSEDKN-LA-EREELQRKLSQLEQKLQEKEKKIQELEKQLELE 151 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHcCC-ch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66555555544444443221 100000 00 124445555555555555555555555544333
No 83
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=95.91 E-value=1.8 Score=45.40 Aligned_cols=87 Identities=22% Similarity=0.312 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 111 VDKAHARADELEKQIDNLKKESEKQQKEK--------E----ALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTE 178 (321)
Q Consensus 111 ~~~~~~RireL~k~Ie~Lk~ele~~~~kk--------~----~LEa~a~e~ekk~~el~~~le~Lek~~~Eqk~~l~elE 178 (321)
.+.++.||+.|+++++.|..++...+... + .|-.+=+.+.....++......+.+.......+|..++
T Consensus 244 Le~aq~ri~~lE~e~e~L~~ql~~~N~~~~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e~~~~qI~~le 323 (629)
T KOG0963|consen 244 LEDAQQRIVFLEREVEQLREQLAKANSSKKLAKIDDIDALGSVLNQKDSEIAQLSNDIERLEASLVEEREKHKAQISALE 323 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678899999999999999988877554 1 22222233334444555555666677777888888888
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 020809 179 RALKVAEEEMMRAKFEATS 197 (321)
Q Consensus 179 ~~lq~~Eeei~kl~~ea~~ 197 (321)
+.+...-..+.++....+.
T Consensus 324 ~~l~~~~~~leel~~kL~~ 342 (629)
T KOG0963|consen 324 KELKAKISELEELKEKLNS 342 (629)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 8888877777777555543
No 84
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=95.89 E-value=1.5 Score=47.01 Aligned_cols=71 Identities=14% Similarity=0.193 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q 020809 121 LEKQIDNLKKESEKQQKEK-EALEARAIEAEKKISDLSAKLEKLQKIND---EQKSKIRKTERALKVAEEEMMRA 191 (321)
Q Consensus 121 L~k~Ie~Lk~ele~~~~kk-~~LEa~a~e~ekk~~el~~~le~Lek~~~---Eqk~~l~elE~~lq~~Eeei~kl 191 (321)
++.+|+.+++++....... ..+......+..+.+.++..+++++.... .....+..++++....+..+..+
T Consensus 321 l~~qi~~l~~~i~~e~~~~~~~~~~~~~~a~~~~~~L~~~l~~~~~~~~~~~~~~~e~~~L~Re~~~~~~~Y~~l 395 (754)
T TIGR01005 321 AKSSLADLDAQIRSELQKITKSLLMQADAAQARESQLVSDVNQLKAASAQAGEQQVDLDALQRDAAAKRQLYESY 395 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555554443322221 22333333333333344444444433332 23455555555555555555544
No 85
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=95.79 E-value=3.4 Score=44.22 Aligned_cols=101 Identities=24% Similarity=0.211 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 020809 121 LEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSRSK 200 (321)
Q Consensus 121 L~k~Ie~Lk~ele~~~~kk~~LEa~a~e~ekk~~el~~~le~Lek~~~Eqk~~l~elE~~lq~~Eeei~kl~~ea~~~a~ 200 (321)
+..++..+..-++..+.+..++...+..+...+...++.+++++....+-...+...-.....+++++.++........+
T Consensus 543 l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~k~ 622 (698)
T KOG0978|consen 543 LIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLERLKK 622 (698)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33334444444455555555555556666666666666667776666666677776766677777777777555544432
Q ss_pred hhhhhhccCchhHHHHHHHHHHHH
Q 020809 201 ELTEVHSAWLPPWLAVHLLQCQSL 224 (321)
Q Consensus 201 ql~e~~g~~l~Pwla~~~~~~~~~ 224 (321)
..+ |.-..|.|+.+...|...
T Consensus 623 ~~~---~~s~d~~L~EElk~yK~~ 643 (698)
T KOG0978|consen 623 EES---GASADEVLAEELKEYKEL 643 (698)
T ss_pred ccc---cccccHHHHHHHHHHHhc
Confidence 222 334567777777666654
No 86
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=95.77 E-value=3 Score=44.26 Aligned_cols=46 Identities=9% Similarity=0.297 Sum_probs=25.8
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHH
Q 020809 42 PLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSE 87 (321)
Q Consensus 42 ~l~~el~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~ 87 (321)
.+..++++++.++..++...+.+.+++..++..++.++..+.+++.
T Consensus 206 ~~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~ 251 (650)
T TIGR03185 206 SILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEK 251 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566666666555555555555555555555555554444
No 87
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.76 E-value=2.1 Score=47.14 Aligned_cols=72 Identities=24% Similarity=0.314 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 020809 125 IDNLKKESEKQQKEKEALEARAIEAEK-------KISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEAT 196 (321)
Q Consensus 125 Ie~Lk~ele~~~~kk~~LEa~a~e~ek-------k~~el~~~le~Lek~~~Eqk~~l~elE~~lq~~Eeei~kl~~ea~ 196 (321)
++.+..++.+...++.+++...++... ...++...++.+.....+.|+.-..+...+..+++.+.+.+....
T Consensus 420 ~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~l~~~i~~~~~dl~~~~~~L~ 498 (1200)
T KOG0964|consen 420 IEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWREEKKLRSLIANLEEDLSRAEKNLR 498 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444443332 334445556666666666777666666666666666666654444
No 88
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=95.71 E-value=0.21 Score=38.35 Aligned_cols=65 Identities=23% Similarity=0.364 Sum_probs=37.0
Q ss_pred HHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 64 KTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLK 129 (321)
Q Consensus 64 ~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~qk~~~~~~eeq~~~~~~RireL~k~Ie~Lk 129 (321)
+...|.++|..|+++..+-..++.+...+.+.|..+.. ...+.+..+..++.|+..+...++.|+
T Consensus 3 l~~~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~-~~~e~e~~~~~l~~~~~~~e~~~~~l~ 67 (74)
T PF12329_consen 3 LEKKLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRA-KIKELEKQIKELKKKLEELEKELESLE 67 (74)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777777777777777776666666666644 334444444444444444444444433
No 89
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=95.60 E-value=3.3 Score=43.94 Aligned_cols=93 Identities=24% Similarity=0.362 Sum_probs=40.0
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHhhh-------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 020809 42 PLKIELDQLKSKIRSLESHIDEKTQELK-------GKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKA 114 (321)
Q Consensus 42 ~l~~el~qlk~ki~~Les~i~e~~~eLk-------~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~qk~~~~~~eeq~~~~ 114 (321)
.++.++..|+..+..|..++.....+-. +.+..|.+++..+........+...-+..++..+ .-+..+
T Consensus 84 ~Lq~E~~~L~kElE~L~~qlqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk-----~t~SRA 158 (617)
T PF15070_consen 84 QLQAEAEHLRKELESLEEQLQAQVENNEQLSRLNQEQEERLAELEEELERLQEQQEDRQKLLEQLQSDK-----ATASRA 158 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc-----hHHHHH
Confidence 4555566666666666655544433333 3334444444444443333333222223332221 011222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 115 HARADELEKQIDNLKKESEKQQKEK 139 (321)
Q Consensus 115 ~~RireL~k~Ie~Lk~ele~~~~kk 139 (321)
-...++|+.++..++.--..+..++
T Consensus 159 lsQN~eLK~QL~Elq~~Fv~ltne~ 183 (617)
T PF15070_consen 159 LSQNRELKEQLAELQDAFVKLTNEN 183 (617)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHhh
Confidence 2333455555555555444444444
No 90
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=95.59 E-value=1.3 Score=48.85 Aligned_cols=141 Identities=25% Similarity=0.321 Sum_probs=70.1
Q ss_pred CCchHHHHHHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhHHHHHHH-----
Q 020809 39 DSSPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKK--ETLNAAEQV----- 111 (321)
Q Consensus 39 ~~~~l~~el~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~qk~--~~~~~eeq~----- 111 (321)
...++.-.+-+++.+|.-|+.++++....+..+..+|+.++.++..+..+|.....+-.+...- ....+-++.
T Consensus 171 ~~~hL~velAdle~kir~LrqElEEK~enll~lr~eLddleae~~klrqe~~e~l~ea~ra~~yrdeldalre~aer~d~ 250 (1195)
T KOG4643|consen 171 KNLHLEVELADLEKKIRTLRQELEEKFENLLRLRNELDDLEAEISKLRQEIEEFLDEAHRADRYRDELDALREQAERPDT 250 (1195)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhhhcCCC
Confidence 4556666677777777777777777666666666666655555555555555444433322111 111111111
Q ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 112 ---------DKAHARADELEKQIDNLKKESEKQQKEKEALEARA--IEAEKKISDLSAKLEKLQKINDEQKSKIRKTER 179 (321)
Q Consensus 112 ---------~~~~~RireL~k~Ie~Lk~ele~~~~kk~~LEa~a--~e~ekk~~el~~~le~Lek~~~Eqk~~l~elE~ 179 (321)
+-++.|+.+|+..=..|.++.+-.+..++.+.++- ...+..+=.++++++.|+....--+.++.++-.
T Consensus 251 ~ykerlmDs~fykdRveelkedN~vLleekeMLeeQLq~lrarse~~tleseiiqlkqkl~dm~~erdtdr~kteeL~e 329 (1195)
T KOG4643|consen 251 TYKERLMDSDFYKDRVEELKEDNRVLLEEKEMLEEQLQKLRARSEGATLESEIIQLKQKLDDMRSERDTDRHKTEELHE 329 (1195)
T ss_pred ccchhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 11344444444444444444444444444444333 334445555555555555555555555544443
No 91
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=95.56 E-value=3.7 Score=42.95 Aligned_cols=166 Identities=18% Similarity=0.235 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 020809 121 LEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSRSK 200 (321)
Q Consensus 121 L~k~Ie~Lk~ele~~~~kk~~LEa~a~e~ekk~~el~~~le~Lek~~~Eqk~~l~elE~~lq~~Eeei~kl~~ea~~~a~ 200 (321)
|+++|..+.+...........-..--..+...+.+....++.+++...+....++.+..+...+.+.+.++.......-+
T Consensus 349 l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR 428 (560)
T PF06160_consen 349 LEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKR 428 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444443333344455567777778888888888888888888888888888888888777776666
Q ss_pred hhhhhhccCchh----HHHHHHHHHHHHHHhHHHhhCcchHHHHHHHHHHHHHhhccccchhHHhhhhhhhhhhhhhHHH
Q 020809 201 ELTEVHSAWLPP----WLAVHLLQCQSLIETHWNAHGKPAMDVAIQKALEKKAQAGKWVQPHVETIKAKWIPAVKEQWVV 276 (321)
Q Consensus 201 ql~e~~g~~l~P----wla~~~~~~~~~~~~~~~~hg~p~~~~~~~~~~~k~~~~~~~~~ph~~~~~~k~~p~~~~~~~~ 276 (321)
.+...+---+|- .+..-...+..+...+ .+...=|+.+.+.... +...|+++..++.-.|..- .
T Consensus 429 ~lek~nLPGlp~~y~~~~~~~~~~i~~l~~~L--~~~pinm~~v~~~l~~--------a~~~v~~L~~~t~~li~~A--~ 496 (560)
T PF06160_consen 429 RLEKSNLPGLPEDYLDYFFDVSDEIEELSDEL--NQVPINMDEVNKQLEE--------AEDDVETLEEKTEELIDNA--T 496 (560)
T ss_pred HHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHH--hcCCcCHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHH--H
Confidence 554433111222 2222223333322221 1222334444333222 4556777777776653321 1
Q ss_pred HHh----------ccchhhHHHHhHhHHHHHh
Q 020809 277 FTT----------NVEPHVQTLKTKTIEACEA 298 (321)
Q Consensus 277 ~~~----------~~~p~~q~~~~~~~~~~~~ 298 (321)
+.+ .-.|-|...-+.+-.+|+.
T Consensus 497 L~E~~iQYaNRYR~~~~~v~~al~~Ae~~F~~ 528 (560)
T PF06160_consen 497 LAEQLIQYANRYRSDNPEVDEALTEAEDLFRN 528 (560)
T ss_pred HHHHHHHHHhcccCCCHHHHHHHHHHHHHHHh
Confidence 111 4566677777777666665
No 92
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=95.50 E-value=2.2 Score=40.03 Aligned_cols=144 Identities=19% Similarity=0.310 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 020809 47 LDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQID 126 (321)
Q Consensus 47 l~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~qk~~~~~~eeq~~~~~~RireL~k~Ie 126 (321)
+.-+...+..+..........+......++..++.+..+..++..|+.+....-. ....+....+....|+.+|...|.
T Consensus 19 ~~~l~~~~e~~~~~L~~~~~~~~~~~~~~~~~e~~l~~L~~d~~~L~~k~~~~~~-~~~~l~~~t~~t~~~a~~L~~~i~ 97 (264)
T PF06008_consen 19 PYKLLSSIEDLTNQLRSYRSKLNPQKQQLDPLEKELESLEQDVENLQEKATKVSR-KAQQLNNNTERTLQRAQDLEQFIQ 97 (264)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444555555554445555555666666666666666666666665533 345566667777778888888888
Q ss_pred HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 127 NLKKESEKQQKEKEALEA-----RAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKF 193 (321)
Q Consensus 127 ~Lk~ele~~~~kk~~LEa-----~a~e~ekk~~el~~~le~Lek~~~Eqk~~l~elE~~lq~~Eeei~kl~~ 193 (321)
.+...+..+-.+...+-. .-.++...+.++...+..|++.. -.......+.++..++.-+.+...
T Consensus 98 ~l~~~i~~l~~~~~~l~~~~~~~~~~~l~~~l~ea~~mL~emr~r~--f~~~~~~Ae~El~~A~~LL~~v~~ 167 (264)
T PF06008_consen 98 NLQDNIQELIEQVESLNENGDQLPSEDLQRALAEAQRMLEEMRKRD--FTPQRQNAEDELKEAEDLLSRVQK 167 (264)
T ss_pred HHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHHHHHHHHHHhcc--chhHHHHHHHHHHHHHHHHHHHHH
Confidence 888777777766644443 33444556666666666665542 444445555555555555555533
No 93
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=95.40 E-value=0.25 Score=37.92 Aligned_cols=71 Identities=39% Similarity=0.499 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 77 QKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIE 148 (321)
Q Consensus 77 q~ek~i~e~~~~I~~Lq~eI~~~qk~~~~~~eeq~~~~~~RireL~k~Ie~Lk~ele~~~~kk~~LEa~a~e 148 (321)
.+++.|.++..+|+.|..+-..+-+ .+......+-++.+.+.+++..+..+...++....+...|+.++..
T Consensus 2 sl~~~l~EKDe~Ia~L~eEGekLSk-~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l~~ 72 (74)
T PF12329_consen 2 SLEKKLAEKDEQIAQLMEEGEKLSK-KELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERLKR 72 (74)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3567888889999999988888854 6667777788888888888888888888888877777777666543
No 94
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=95.33 E-value=1.7 Score=37.56 Aligned_cols=99 Identities=17% Similarity=0.307 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 81 AIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKL 160 (321)
Q Consensus 81 ~i~e~~~~I~~Lq~eI~~~qk~~~~~~eeq~~~~~~RireL~k~Ie~Lk~ele~~~~kk~~LEa~a~e~ekk~~el~~~l 160 (321)
.-..+.+.|..|+.++...+. ....+....+..++-+..|+.+|..+-..+.....+...+-.....+.+.+...+.++
T Consensus 18 e~dsle~~v~~LEreLe~~q~-~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv 96 (140)
T PF10473_consen 18 EKDSLEDHVESLERELEMSQE-NKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKV 96 (140)
T ss_pred hHhhHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444433 1122233333334444444444444444444444444444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 020809 161 EKLQKINDEQKSKIRKTERA 180 (321)
Q Consensus 161 e~Lek~~~Eqk~~l~elE~~ 180 (321)
..|+.........|...+..
T Consensus 97 ~eLE~~~~~~~~~l~~~E~e 116 (140)
T PF10473_consen 97 SELESLNSSLENLLQEKEQE 116 (140)
T ss_pred HHHHHHhHHHHHHHHHHHHH
Confidence 44444444444444444433
No 95
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=95.25 E-value=3.9 Score=41.61 Aligned_cols=57 Identities=9% Similarity=0.229 Sum_probs=27.0
Q ss_pred CchHHHHHHHHHHHHHHHHH--------hHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 40 SSPLKIELDQLKSKIRSLES--------HIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKEL 96 (321)
Q Consensus 40 ~~~l~~el~qlk~ki~~Les--------~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI 96 (321)
...++.++++.+.++..... .......++..++..+.+.+.++...+..+..++..+
T Consensus 170 l~~~~~~L~~ae~~l~~f~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~l~~~~a~~~~l~~~l 234 (498)
T TIGR03007 170 IKTYEKKLEAAENRLKAFKQENGGILPDQEGDYYSEISEAQEELEAARLELNEAIAQRDALKRQL 234 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555555555544432 1122344555555555555555555555555554433
No 96
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=95.22 E-value=3.6 Score=44.67 Aligned_cols=58 Identities=22% Similarity=0.362 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 44 KIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQK 101 (321)
Q Consensus 44 ~~el~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~qk 101 (321)
......+..++..+++....+...+......|......+.+.+..|..|+.++...++
T Consensus 588 ~~~~~el~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~ke 645 (769)
T PF05911_consen 588 TSEKKELEEELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKE 645 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666666666666666666666666666666666666666666666666543
No 97
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=95.18 E-value=0.61 Score=45.27 Aligned_cols=68 Identities=21% Similarity=0.231 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 124 QIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRA 191 (321)
Q Consensus 124 ~Ie~Lk~ele~~~~kk~~LEa~a~e~ekk~~el~~~le~Lek~~~Eqk~~l~elE~~lq~~Eeei~kl 191 (321)
++..|+.+.+.+..++..++.....++......-.....+.-...+.....+.+..........+.++
T Consensus 65 eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L 132 (314)
T PF04111_consen 65 ELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRL 132 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444455555555555555555666666666666665
No 98
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=95.05 E-value=2.7 Score=44.54 Aligned_cols=74 Identities=23% Similarity=0.370 Sum_probs=30.6
Q ss_pred HhHHHHHHhhhcHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 59 SHIDEKTQELKGKDEVVAQKEKAIQDK--SERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESE 133 (321)
Q Consensus 59 s~i~e~~~eLk~kd~~I~q~ek~i~e~--~~~I~~Lq~eI~~~qk~~~~~~eeq~~~~~~RireL~k~Ie~Lk~ele 133 (321)
+.+.....++..++.+|+.+...|... ...|..+..++..+++ ....+....+....++..+++.|+.+++++.
T Consensus 391 ~~~~~~~~~~~~~e~el~~l~~~l~~~~~~e~i~~l~e~l~~l~~-~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 466 (650)
T TIGR03185 391 DAKSQLLKELRELEEELAEVDKKISTIPSEEQIAQLLEELGEAQN-ELFRSEAEIEELLRQLETLKEAIEALRKTLD 466 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444332 2344444444444432 2223333333333344444444444444443
No 99
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=95.01 E-value=6 Score=42.27 Aligned_cols=84 Identities=18% Similarity=0.226 Sum_probs=41.2
Q ss_pred CchHHHHHHHHHHHHHHHHHhHHHHHH----------------hhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 020809 40 SSPLKIELDQLKSKIRSLESHIDEKTQ----------------ELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKE 103 (321)
Q Consensus 40 ~~~l~~el~qlk~ki~~Les~i~e~~~----------------eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~qk~~ 103 (321)
.+.+-+.+..+..|+..+-..-+.+.. +|.++|+.|+++..+=..+++++-.-.+-|..+.. +
T Consensus 404 ~~e~~QRva~lEkKvqa~~kERDalr~e~kslk~ela~~l~~DeLaEkdE~I~~lm~EGEkLSK~ql~qs~iIkKLRA-k 482 (961)
T KOG4673|consen 404 REEYHQRVATLEKKVQALTKERDALRREQKSLKKELAAALLKDELAEKDEIINQLMAEGEKLSKKQLAQSAIIKKLRA-K 482 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-H
Confidence 334445555555555444444444433 44555666666665555555555555555555544 2
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 020809 104 TLNAAEQVDKAHARADELEKQ 124 (321)
Q Consensus 104 ~~~~eeq~~~~~~RireL~k~ 124 (321)
.+..+.-..+.+..|..|..+
T Consensus 483 ~ke~etl~~K~ge~i~~L~sE 503 (961)
T KOG4673|consen 483 IKEAETLEEKKGELITKLQSE 503 (961)
T ss_pred hhhhhHHHHHhhhHHHHHHHH
Confidence 233333333444444444444
No 100
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=95.00 E-value=0.73 Score=44.74 Aligned_cols=51 Identities=22% Similarity=0.261 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 134 KQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVA 184 (321)
Q Consensus 134 ~~~~kk~~LEa~a~e~ekk~~el~~~le~Lek~~~Eqk~~l~elE~~lq~~ 184 (321)
....++..||....++...+..+......+.....+.+.....+...+-..
T Consensus 61 ~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~ 111 (314)
T PF04111_consen 61 ELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEF 111 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333344444433334444444433333333
No 101
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=95.00 E-value=3 Score=38.63 Aligned_cols=25 Identities=16% Similarity=0.314 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 167 NDEQKSKIRKTERALKVAEEEMMRA 191 (321)
Q Consensus 167 ~~Eqk~~l~elE~~lq~~Eeei~kl 191 (321)
.+.....++.++..+..++..+...
T Consensus 187 rdl~~~~~~~l~~~l~~Lq~~ln~~ 211 (240)
T PF12795_consen 187 RDLLKARIQRLQQQLQALQNLLNQK 211 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444445555555555555544
No 102
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=94.99 E-value=6.9 Score=46.05 Aligned_cols=69 Identities=13% Similarity=0.204 Sum_probs=40.7
Q ss_pred HHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 020809 55 RSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQ 124 (321)
Q Consensus 55 ~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~qk~~~~~~eeq~~~~~~RireL~k~ 124 (321)
..|....+.....+.++...|+.++..+..++..+..|..+|....+ ...-++...+.-+.|..+|-..
T Consensus 1232 ~~LRee~~~~~~k~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~a-el~~l~~e~~~wK~R~q~L~~k 1300 (1822)
T KOG4674|consen 1232 KVLREENEANLEKIQELRDKIEKLNFELAPLQNELKELKAELQEKVA-ELKKLEEENDRWKQRNQDLLEK 1300 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555566666666666666666666666666665544 3355566666777777774443
No 103
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=94.97 E-value=4.7 Score=40.81 Aligned_cols=32 Identities=9% Similarity=0.110 Sum_probs=21.5
Q ss_pred CCchHHHHHHHHHHHHHHHHHhHHHHHHhhhc
Q 020809 39 DSSPLKIELDQLKSKIRSLESHIDEKTQELKG 70 (321)
Q Consensus 39 ~~~~l~~el~qlk~ki~~Les~i~e~~~eLk~ 70 (321)
+...+..+++.++.++..++.++..+..+++.
T Consensus 91 d~~~~~~~~~~~~~~~~~~~~~~~rL~a~~~~ 122 (457)
T TIGR01000 91 DNGNEENQKQLLEQQLDNLKDQKKSLDTLKQS 122 (457)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566777777777777777776666555543
No 104
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.92 E-value=7.7 Score=43.01 Aligned_cols=110 Identities=25% Similarity=0.337 Sum_probs=65.4
Q ss_pred cCCCCchHHHHHHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------hh
Q 020809 36 DAVDSSPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKK-----------ET 104 (321)
Q Consensus 36 ~~~~~~~l~~el~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~qk~-----------~~ 104 (321)
++.++...-.+|-+++..-.+|+...+.-...|+.+...++.+.+..+.... -....+.|+.+.++ .-
T Consensus 172 g~~~ll~~h~eL~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~~re-r~~~~~~Ie~l~~k~~~v~y~~~~~ey 250 (1072)
T KOG0979|consen 172 GAEELLQYHIELMDLREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDVERVRE-RERKKSKIELLEKKKKWVEYKKHDREY 250 (1072)
T ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhccccchHhhhHHH
Confidence 4445556667788888888888888888877777777777777777755543 34456777777554 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 105 LNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARA 146 (321)
Q Consensus 105 ~~~eeq~~~~~~RireL~k~Ie~Lk~ele~~~~kk~~LEa~a 146 (321)
..+-.-.+.+++.+|.|.+.+..+...++.++..+.++.++-
T Consensus 251 ~~~k~~~~r~k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~ 292 (1072)
T KOG0979|consen 251 NAYKQAKDRAKKELRKLEKEIKPIEDKKEELESEKKETRSKI 292 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHH
Confidence 223334455555566666654444444444433333333333
No 105
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=94.91 E-value=0.0071 Score=64.62 Aligned_cols=106 Identities=20% Similarity=0.363 Sum_probs=0.0
Q ss_pred CCchHHHHHHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH--hhHHHHHHHHH
Q 020809 39 DSSPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKS---ERIVSLQKELSSLQKK--ETLNAAEQVDK 113 (321)
Q Consensus 39 ~~~~l~~el~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~---~~I~~Lq~eI~~~qk~--~~~~~eeq~~~ 113 (321)
....++.++++++.++..++...++...++..++..|..+++...++. .....|..+++.+..+ +-..++..++.
T Consensus 240 ~~~~l~~ql~~L~~el~~~e~~~~d~~~~~e~le~ei~~L~q~~~eL~~~A~~a~~LrDElD~lR~~a~r~~klE~~ve~ 319 (713)
T PF05622_consen 240 ELADLRAQLRRLREELERLEEQRDDLKIELEELEKEIDELRQENEELQAEAREARALRDELDELREKADRADKLENEVEK 319 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 445566677777777766666666666666666666666665555544 5566666777776543 33446667777
Q ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 114 AHARADE---LEKQIDNLKKESEKQQKEKEALEA 144 (321)
Q Consensus 114 ~~~Rire---L~k~Ie~Lk~ele~~~~kk~~LEa 144 (321)
+++|+.+ |+++|..|+.+....-..+..||.
T Consensus 320 YKkKLed~~~lk~qvk~Lee~N~~l~e~~~~LEe 353 (713)
T PF05622_consen 320 YKKKLEDLEDLKRQVKELEEDNAVLLETKAMLEE 353 (713)
T ss_dssp ----------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777 444455555544433333333333
No 106
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=94.89 E-value=6.9 Score=43.04 Aligned_cols=15 Identities=27% Similarity=0.259 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHH
Q 020809 177 TERALKVAEEEMMRA 191 (321)
Q Consensus 177 lE~~lq~~Eeei~kl 191 (321)
+|.....+++.+..+
T Consensus 460 lEekVklLeetv~dl 474 (1243)
T KOG0971|consen 460 LEEKVKLLEETVGDL 474 (1243)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444444443
No 107
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=94.85 E-value=9 Score=43.40 Aligned_cols=29 Identities=17% Similarity=0.335 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 108 AEQVDKAHARADELEKQIDNLKKESEKQQ 136 (321)
Q Consensus 108 eeq~~~~~~RireL~k~Ie~Lk~ele~~~ 136 (321)
..+.+.++.++..++..++.|+..+...+
T Consensus 207 ~~q~dl~~~~~~~l~~~~~~Lq~~in~kR 235 (1109)
T PRK10929 207 RLRSELAKKRSQQLDAYLQALRNQLNSQR 235 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444445555555555554444
No 108
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=94.82 E-value=3.4 Score=44.88 Aligned_cols=78 Identities=19% Similarity=0.255 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 117 RADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFE 194 (321)
Q Consensus 117 RireL~k~Ie~Lk~ele~~~~kk~~LEa~a~e~ekk~~el~~~le~Lek~~~Eqk~~l~elE~~lq~~Eeei~kl~~e 194 (321)
.+..+++-=..+..++...+.....++.+...++..+..+..++..|+.....-+..-.++...-..++.++.+...+
T Consensus 639 eL~~~keS~s~~E~ql~~~~e~~e~le~~~~~~e~E~~~l~~Ki~~Le~Ele~er~~~~e~~~kc~~Le~el~r~~~~ 716 (769)
T PF05911_consen 639 ELESAKESNSLAETQLKAMKESYESLETRLKDLEAEAEELQSKISSLEEELEKERALSEELEAKCRELEEELERMKKE 716 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhhcc
Confidence 333333333344445555555556677777777777777777777777777776666666676677777777766433
No 109
>PRK11281 hypothetical protein; Provisional
Probab=94.76 E-value=2.1 Score=48.26 Aligned_cols=18 Identities=17% Similarity=0.335 Sum_probs=7.9
Q ss_pred chHHHHHHHHHHHHHHHH
Q 020809 41 SPLKIELDQLKSKIRSLE 58 (321)
Q Consensus 41 ~~l~~el~qlk~ki~~Le 58 (321)
.+..+++.+++.++..+.
T Consensus 90 ~~Ap~~l~~a~~~Le~Lk 107 (1113)
T PRK11281 90 AQAPAKLRQAQAELEALK 107 (1113)
T ss_pred HHhHHHHHHHHHHHHHhh
Confidence 333444444444444433
No 110
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=94.75 E-value=2 Score=36.03 Aligned_cols=94 Identities=17% Similarity=0.216 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHH--HhhHHHHHHHHHHHHHH
Q 020809 46 ELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSE-----RIVSLQKELSSLQK--KETLNAAEQVDKAHARA 118 (321)
Q Consensus 46 el~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~-----~I~~Lq~eI~~~qk--~~~~~~eeq~~~~~~Ri 118 (321)
++.+.=.+..+|+++++.+..+...++..|.+.++-+++++. .|...-+.+-.-.. +...+++++.+-++.||
T Consensus 7 ~~q~~l~q~QqLq~ql~~~~~qk~~le~qL~E~~~al~Ele~l~eD~~vYk~VG~llvk~~k~~~~~eL~er~E~Le~ri 86 (119)
T COG1382 7 EVQAQLAQLQQLQQQLQKVILQKQQLEAQLKEIEKALEELEKLDEDAPVYKKVGNLLVKVSKEEAVDELEERKETLELRI 86 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHhhhHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 444445555666666666666666677777777666666652 44444444322221 13455666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 020809 119 DELEKQIDNLKKESEKQQKEK 139 (321)
Q Consensus 119 reL~k~Ie~Lk~ele~~~~kk 139 (321)
..|+++.+.++..+++.+..+
T Consensus 87 ~tLekQe~~l~e~l~eLq~~i 107 (119)
T COG1382 87 KTLEKQEEKLQERLEELQSEI 107 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666444
No 111
>PRK10884 SH3 domain-containing protein; Provisional
Probab=94.71 E-value=0.68 Score=42.40 Aligned_cols=22 Identities=23% Similarity=0.502 Sum_probs=8.9
Q ss_pred HHHHHHHHHhHHHHHHhhhcHH
Q 020809 51 KSKIRSLESHIDEKTQELKGKD 72 (321)
Q Consensus 51 k~ki~~Les~i~e~~~eLk~kd 72 (321)
+.++..++.+++++..++.+.+
T Consensus 92 ~~rlp~le~el~~l~~~l~~~~ 113 (206)
T PRK10884 92 RTRVPDLENQVKTLTDKLNNID 113 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444433333333
No 112
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=94.68 E-value=2.5 Score=36.24 Aligned_cols=95 Identities=12% Similarity=0.205 Sum_probs=62.6
Q ss_pred chHHHHHHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 020809 41 SPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADE 120 (321)
Q Consensus 41 ~~l~~el~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~qk~~~~~~eeq~~~~~~Rire 120 (321)
..+-+=+..|=.....--...+.++..+..++..+..++..+..+..++..++.++...+. ....+..+...+...++.
T Consensus 34 ~~vin~i~~Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~-~~~~l~~~~~~~~~~~k~ 112 (151)
T PF11559_consen 34 VRVINCIYDLLQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEE-KERQLQKQLKSLEAKLKQ 112 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 3344455666666666666777777777777888888887777777777777777776654 445555555555555665
Q ss_pred HHHHHHHHHHHHHHHH
Q 020809 121 LEKQIDNLKKESEKQQ 136 (321)
Q Consensus 121 L~k~Ie~Lk~ele~~~ 136 (321)
.+.++..++..+...+
T Consensus 113 ~kee~~klk~~~~~~~ 128 (151)
T PF11559_consen 113 EKEELQKLKNQLQQRK 128 (151)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6666666665555555
No 113
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=94.67 E-value=4.9 Score=40.66 Aligned_cols=26 Identities=27% Similarity=0.367 Sum_probs=19.4
Q ss_pred CCchHHHHHHHHHHHHHHHHHhHHHH
Q 020809 39 DSSPLKIELDQLKSKIRSLESHIDEK 64 (321)
Q Consensus 39 ~~~~l~~el~qlk~ki~~Les~i~e~ 64 (321)
+...++.++..++.++..|+..++.+
T Consensus 98 ~~~~~~~~~~~~~~~~~rL~a~~~~~ 123 (457)
T TIGR01000 98 QKQLLEQQLDNLKDQKKSLDTLKQSI 123 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677888888888888887766543
No 114
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=94.64 E-value=6.7 Score=40.97 Aligned_cols=87 Identities=21% Similarity=0.288 Sum_probs=38.7
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 020809 42 PLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADEL 121 (321)
Q Consensus 42 ~l~~el~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~qk~~~~~~eeq~~~~~~RireL 121 (321)
..+.-+++.......++..+..+..+++++.......++....-..++.....-| .+++.....++.|++.|
T Consensus 96 ~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l--------~~leAe~~~~krr~~~l 167 (546)
T KOG0977|consen 96 TARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRL--------SELEAEINTLKRRIKAL 167 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhh--------hhhhhHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444433333333333333333333 33444455555566665
Q ss_pred HHHHHHHHHHHHHHH
Q 020809 122 EKQIDNLKKESEKQQ 136 (321)
Q Consensus 122 ~k~Ie~Lk~ele~~~ 136 (321)
+.++..|+++...+.
T Consensus 168 e~e~~~Lk~en~rl~ 182 (546)
T KOG0977|consen 168 EDELKRLKAENSRLR 182 (546)
T ss_pred HHHHHHHHHHhhhhH
Confidence 555555555554444
No 115
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=94.64 E-value=6.3 Score=42.83 Aligned_cols=55 Identities=20% Similarity=0.259 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---------hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 75 VAQKEKAIQDKSERIVSLQKELSSLQKK---------ETLNAAEQVDKAHARADELEKQIDNLK 129 (321)
Q Consensus 75 I~q~ek~i~e~~~~I~~Lq~eI~~~qk~---------~~~~~eeq~~~~~~RireL~k~Ie~Lk 129 (321)
+..+-....+++.+|+.+.+.|..+..- ......++.+.+++...++..++..++
T Consensus 381 lqsL~~l~aerqeQidelKn~if~~e~~~~dhe~~kneL~~a~ekld~mgthl~mad~Q~s~fk 444 (1265)
T KOG0976|consen 381 LQSLLELQAERQEQIDELKNHIFRLEQGKKDHEAAKNELQEALEKLDLMGTHLSMADYQLSNFK 444 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhHH
Confidence 3333333444445555555555544331 134456666666666666666644443
No 116
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=94.64 E-value=6.7 Score=40.96 Aligned_cols=14 Identities=21% Similarity=0.562 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHHH
Q 020809 153 ISDLSAKLEKLQKI 166 (321)
Q Consensus 153 ~~el~~~le~Lek~ 166 (321)
+...+..++.+.+.
T Consensus 348 l~~i~~~~d~l~k~ 361 (581)
T KOG0995|consen 348 LNKIQSELDRLSKE 361 (581)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 117
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=94.63 E-value=5.6 Score=41.52 Aligned_cols=46 Identities=13% Similarity=0.176 Sum_probs=21.7
Q ss_pred chHHHHHHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHH
Q 020809 41 SPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKS 86 (321)
Q Consensus 41 ~~l~~el~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~ 86 (321)
..++---.+=+..|.+|.+.+...-..++.++.+=..++.+|+.+.
T Consensus 31 s~ir~sR~rEK~El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr 76 (546)
T KOG0977|consen 31 SPIRDSREREKKELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLR 76 (546)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344333444455555555555554444444444444444444443
No 118
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=94.63 E-value=7 Score=43.58 Aligned_cols=34 Identities=12% Similarity=0.141 Sum_probs=15.5
Q ss_pred chhHHhhhhhhhhhhhhhHHHHHhccchhhHHHH
Q 020809 256 QPHVETIKAKWIPAVKEQWVVFTTNVEPHVQTLK 289 (321)
Q Consensus 256 ~ph~~~~~~k~~p~~~~~~~~~~~~~~p~~q~~~ 289 (321)
.--+.+||++=-..+-+-+..|-.++||-|..++
T Consensus 981 k~~F~~VK~~R~~~F~~~F~~va~~Id~IYK~Lt 1014 (1141)
T KOG0018|consen 981 KNAFNKVKKKRYERFMACFEHVADNIDRIYKELT 1014 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344444444444444444444444555444444
No 119
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=94.59 E-value=10 Score=42.86 Aligned_cols=52 Identities=21% Similarity=0.222 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 020809 151 KKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSRSKEL 202 (321)
Q Consensus 151 kk~~el~~~le~Lek~~~Eqk~~l~elE~~lq~~Eeei~kl~~ea~~~a~ql 202 (321)
.-+++.....-..++.+.+-...++..+..+..+++++...+.-++..+.++
T Consensus 1570 eaL~~Ad~Aq~~a~~ai~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~ 1621 (1758)
T KOG0994|consen 1570 EALEEADVAQGEAQDAIQGADRDIRLAQQLLAKVQEETAAAEKLATSATQQL 1621 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444444444444444455555555555554444444444444
No 120
>PRK10884 SH3 domain-containing protein; Provisional
Probab=94.56 E-value=0.96 Score=41.43 Aligned_cols=48 Identities=15% Similarity=0.279 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 144 ARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRA 191 (321)
Q Consensus 144 a~a~e~ekk~~el~~~le~Lek~~~Eqk~~l~elE~~lq~~Eeei~kl 191 (321)
.+..+++.++...+.....|+..+++...++..+......++.++..+
T Consensus 118 ~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~ 165 (206)
T PRK10884 118 QRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDK 165 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444544444444444444444
No 121
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=94.55 E-value=10 Score=42.83 Aligned_cols=37 Identities=27% Similarity=0.338 Sum_probs=21.1
Q ss_pred HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 66 QELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKK 102 (321)
Q Consensus 66 ~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~qk~ 102 (321)
.+++..++.+.+.+..++.++..+..++.+++.+++.
T Consensus 494 ~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~ 530 (1317)
T KOG0612|consen 494 HEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKK 530 (1317)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555566666666666666666555443
No 122
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=94.51 E-value=5 Score=38.94 Aligned_cols=125 Identities=23% Similarity=0.303 Sum_probs=56.9
Q ss_pred CCchHHHHHHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 020809 39 DSSPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARA 118 (321)
Q Consensus 39 ~~~~l~~el~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~qk~~~~~~eeq~~~~~~Ri 118 (321)
....-..+++.++.|+..|+..-..+-.+...+.......+ .+=..|-. +--++...++..|
T Consensus 154 ~~~~~~~~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~E-------ekEqqLv~-----------dcv~QL~~An~qi 215 (306)
T PF04849_consen 154 LSSQKCIQLEALQEKLKSLEEENEQLRSEASQLKTETDTYE-------EKEQQLVL-----------DCVKQLSEANQQI 215 (306)
T ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcc-------HHHHHHHH-----------HHHHHhhhcchhH
Confidence 33344456677777777776654444333333332222221 11111111 1122334445555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 119 DELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERAL 181 (321)
Q Consensus 119 reL~k~Ie~Lk~ele~~~~kk~~LEa~a~e~ekk~~el~~~le~Lek~~~Eqk~~l~elE~~l 181 (321)
..|..+|.....+...+..++..|-++.-+++.+...+....+.+......-+..-+.+...+
T Consensus 216 a~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL 278 (306)
T PF04849_consen 216 ASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAEL 278 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555555555555555444444444444443333333333333333
No 123
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=94.46 E-value=3.9 Score=37.48 Aligned_cols=46 Identities=11% Similarity=0.234 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHH
Q 020809 42 PLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSE 87 (321)
Q Consensus 42 ~l~~el~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~ 87 (321)
.+++=+.+++..+......+......-+.....+++.+..+...+.
T Consensus 28 ~l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~ 73 (219)
T TIGR02977 28 MIRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQE 73 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555566555555555555544444444444444444444433
No 124
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=94.46 E-value=10 Score=42.35 Aligned_cols=34 Identities=21% Similarity=0.166 Sum_probs=22.3
Q ss_pred ccchhhHHHHhHhHHHHHhhhhhcCchhHHHHhh
Q 020809 280 NVEPHVQTLKTKTIEACEATKTAVTPHIIRVQEV 313 (321)
Q Consensus 280 ~~~p~~q~~~~~~~~~~~~~~~~~~ph~~k~~~~ 313 (321)
.+.--|..|+++=.+.|..|-++|+-|++.+=..
T Consensus 979 ~ak~~F~~VK~~R~~~F~~~F~~va~~Id~IYK~ 1012 (1141)
T KOG0018|consen 979 KAKNAFNKVKKKRYERFMACFEHVADNIDRIYKE 1012 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566677777777777777777777765443
No 125
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=94.46 E-value=3.7 Score=37.27 Aligned_cols=47 Identities=9% Similarity=0.185 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHH
Q 020809 42 PLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSER 88 (321)
Q Consensus 42 ~l~~el~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~ 88 (321)
-+++-|.+++..+..++..+..+...-+.+...+++.+..+...+.+
T Consensus 27 ~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~ 73 (221)
T PF04012_consen 27 MLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQ 73 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666655555555555555555555444444444
No 126
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=94.41 E-value=9.8 Score=43.04 Aligned_cols=84 Identities=15% Similarity=0.215 Sum_probs=44.9
Q ss_pred HhhhcHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 66 QELKGKDEVVAQKEKAIQDKS-ERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEA 144 (321)
Q Consensus 66 ~eLk~kd~~I~q~ek~i~e~~-~~I~~Lq~eI~~~qk~~~~~~eeq~~~~~~RireL~k~Ie~Lk~ele~~~~kk~~LEa 144 (321)
...+++++.|.++.....+++ .++.-+|.++...+. .-...+++...+..++++++++++.+++...........+.+
T Consensus 465 ~~~keL~e~i~~lk~~~~el~~~q~~l~q~~~ke~~e-k~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~~~~~kv~~ 543 (1317)
T KOG0612|consen 465 EMDKELEETIEKLKSEESELQREQKALLQHEQKEVEE-KLSEEEAKKRKLEALVRQLEEELEDAQKKNDNAADSLEKVNS 543 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 445555555555555555555 355555555555533 334455566666666777666666665555555444444444
Q ss_pred HHHHHH
Q 020809 145 RAIEAE 150 (321)
Q Consensus 145 ~a~e~e 150 (321)
.++.++
T Consensus 544 ~rk~le 549 (1317)
T KOG0612|consen 544 LRKQLE 549 (1317)
T ss_pred HHHHHH
Confidence 444444
No 127
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=94.41 E-value=4.4 Score=41.13 Aligned_cols=75 Identities=17% Similarity=0.219 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 48 DQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDN 127 (321)
Q Consensus 48 ~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~qk~~~~~~eeq~~~~~~RireL~k~Ie~ 127 (321)
.+++++..-.++.+.++++ .++.......+.+..+...|..+.+.+++ ..+..+.+...++.++..+.+++..
T Consensus 328 sqleSqr~y~e~~~~e~~q------sqlen~k~~~e~~~~e~~~l~~~~~~~e~-~kk~~e~k~~q~q~k~~k~~kel~~ 400 (493)
T KOG0804|consen 328 SQLESQRKYYEQIMSEYEQ------SQLENQKQYYELLITEADSLKQESSDLEA-EKKIVERKLQQLQTKLKKCQKELKE 400 (493)
T ss_pred hhhhHHHHHHHHHHHHHHH------HHHHhHHHHHHHHHHHHHhhhhhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555556666666655 23333333333333444444444444433 2244455555555555555555555
Q ss_pred HH
Q 020809 128 LK 129 (321)
Q Consensus 128 Lk 129 (321)
++
T Consensus 401 ~~ 402 (493)
T KOG0804|consen 401 ER 402 (493)
T ss_pred HH
Confidence 44
No 128
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=94.30 E-value=10 Score=43.80 Aligned_cols=21 Identities=19% Similarity=0.346 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHhHHHHHH
Q 020809 46 ELDQLKSKIRSLESHIDEKTQ 66 (321)
Q Consensus 46 el~qlk~ki~~Les~i~e~~~ 66 (321)
++++++.++..++..+..+..
T Consensus 231 ~~~~~~~~le~l~~~~~~l~~ 251 (1353)
T TIGR02680 231 QLDEYRDELERLEALERALRN 251 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555544433
No 129
>PRK09343 prefoldin subunit beta; Provisional
Probab=94.27 E-value=2.8 Score=35.07 Aligned_cols=44 Identities=14% Similarity=0.234 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHH
Q 020809 43 LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKS 86 (321)
Q Consensus 43 l~~el~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~ 86 (321)
+..++.+.-.+...++.++..+..++..++..+.+++.-+.+++
T Consensus 5 ~~~~~q~~~~~~q~lq~~l~~~~~q~~~le~q~~e~~~~~~EL~ 48 (121)
T PRK09343 5 IPPEVQAQLAQLQQLQQQLERLLQQKSQIDLELREINKALEELE 48 (121)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555566666666665555555665555555554443
No 130
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=94.22 E-value=10 Score=41.48 Aligned_cols=55 Identities=9% Similarity=0.171 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 140 EALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFE 194 (321)
Q Consensus 140 ~~LEa~a~e~ekk~~el~~~le~Lek~~~Eqk~~l~elE~~lq~~Eeei~kl~~e 194 (321)
.+.+.....+...+.++......++..-+++...+..+++++..+..++.+++..
T Consensus 462 ~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~ 516 (980)
T KOG0980|consen 462 DDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQRT 516 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444444444444444445555555555555555555555443
No 131
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=94.21 E-value=2.7 Score=34.64 Aligned_cols=69 Identities=16% Similarity=0.273 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 108 AEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRK 176 (321)
Q Consensus 108 eeq~~~~~~RireL~k~Ie~Lk~ele~~~~kk~~LEa~a~e~ekk~~el~~~le~Lek~~~Eqk~~l~e 176 (321)
+.+.+....|+..|+..|+..+........++..|++..+.+......++..+..|+..+.+-.+.++.
T Consensus 8 ~as~~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~ 76 (107)
T PF09304_consen 8 EASQNELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLED 76 (107)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555555555555544444444444444444444444444444444444444444433
No 132
>PRK10698 phage shock protein PspA; Provisional
Probab=94.17 E-value=4.6 Score=37.25 Aligned_cols=44 Identities=11% Similarity=0.163 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHH
Q 020809 43 LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKS 86 (321)
Q Consensus 43 l~~el~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~ 86 (321)
+++=+.+++..+.++...+..+...-+.....+++++..+...+
T Consensus 29 l~q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e 72 (222)
T PRK10698 29 VRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQ 72 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556666666555555554444444555554444444443
No 133
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=94.15 E-value=6 Score=38.48 Aligned_cols=39 Identities=28% Similarity=0.218 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 153 ISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRA 191 (321)
Q Consensus 153 ~~el~~~le~Lek~~~Eqk~~l~elE~~lq~~Eeei~kl 191 (321)
+......+++++....+....|+........+..+|..+
T Consensus 220 i~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~a 258 (312)
T smart00787 220 IMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEA 258 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444444444444444444444
No 134
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=94.10 E-value=5.1 Score=37.43 Aligned_cols=17 Identities=29% Similarity=0.503 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHhHHH
Q 020809 47 LDQLKSKIRSLESHIDE 63 (321)
Q Consensus 47 l~qlk~ki~~Les~i~e 63 (321)
+..++..+..+....+.
T Consensus 22 L~~~~~~l~~~~~~~~~ 38 (302)
T PF10186_consen 22 LLELRSELQQLKEENEE 38 (302)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444333333
No 135
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=94.03 E-value=8.6 Score=39.79 Aligned_cols=95 Identities=21% Similarity=0.269 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 020809 45 IELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAI----QDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADE 120 (321)
Q Consensus 45 ~el~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i----~e~~~~I~~Lq~eI~~~qk~~~~~~eeq~~~~~~Rire 120 (321)
..++-++.+.+-++..+......|+.++..|..+...+ ..+...|..+.+++.+...+....+..=...+.+.+++
T Consensus 337 ~~ld~LqEksqile~sv~~l~~~lkDLd~~~~aLs~rld~qEqtL~~rL~e~~~e~~~~~r~~lekl~~~q~e~~~~l~~ 416 (531)
T PF15450_consen 337 SELDLLQEKSQILEDSVAELMRQLKDLDDHILALSWRLDLQEQTLNLRLSEAKNEWESDERKSLEKLDQWQNEMEKHLKE 416 (531)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666677777777766665543 23334444455555544444445555555666667777
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 020809 121 LEKQIDNLKKESEKQQKEK 139 (321)
Q Consensus 121 L~k~Ie~Lk~ele~~~~kk 139 (321)
+..-|+.|..+|+.+..+.
T Consensus 417 v~eKVd~LpqqI~~vs~Kc 435 (531)
T PF15450_consen 417 VQEKVDSLPQQIEEVSDKC 435 (531)
T ss_pred HHHHHHhhhHHHHHHHHHH
Confidence 7777777777777777555
No 136
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=93.98 E-value=4.7 Score=36.59 Aligned_cols=25 Identities=20% Similarity=0.292 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 169 EQKSKIRKTERALKVAEEEMMRAKF 193 (321)
Q Consensus 169 Eqk~~l~elE~~lq~~Eeei~kl~~ 193 (321)
+....+..++..++..+..+..+..
T Consensus 122 eL~~kL~~~~~~l~~~~~ki~~Lek 146 (194)
T PF15619_consen 122 ELQRKLSQLEQKLQEKEKKIQELEK 146 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555544433
No 137
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=93.83 E-value=12 Score=43.34 Aligned_cols=24 Identities=21% Similarity=0.358 Sum_probs=15.2
Q ss_pred CCchHHHHHHHHHHHHHHHHHhHH
Q 020809 39 DSSPLKIELDQLKSKIRSLESHID 62 (321)
Q Consensus 39 ~~~~l~~el~qlk~ki~~Les~i~ 62 (321)
..+.++.+++.++..+..|+.-..
T Consensus 231 ~~~~~~~~le~l~~~~~~l~~i~~ 254 (1353)
T TIGR02680 231 QLDEYRDELERLEALERALRNFLQ 254 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666677777777666655444
No 138
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=93.81 E-value=6.9 Score=37.98 Aligned_cols=61 Identities=16% Similarity=0.259 Sum_probs=38.3
Q ss_pred cCCCCchHHHHHHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 36 DAVDSSPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSL 99 (321)
Q Consensus 36 ~~~~~~~l~~el~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~ 99 (321)
.....+.++.++..++..-..|.++...+..+-...+++= +..|.+--.++.....+|..+
T Consensus 158 ~~~~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekE---qqLv~dcv~QL~~An~qia~L 218 (306)
T PF04849_consen 158 KCIQLEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKE---QQLVLDCVKQLSEANQQIASL 218 (306)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHH---HHHHHHHHHHhhhcchhHHHH
Confidence 4447788899999888888888888887776666555542 223333444444444444444
No 139
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=93.78 E-value=6.3 Score=37.39 Aligned_cols=39 Identities=15% Similarity=0.129 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 020809 158 AKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEAT 196 (321)
Q Consensus 158 ~~le~Lek~~~Eqk~~l~elE~~lq~~Eeei~kl~~ea~ 196 (321)
.....|.+....+...|++++.....+..++..+.....
T Consensus 186 ~~N~~m~kei~~~re~i~el~e~I~~L~~eV~~L~~~~~ 224 (258)
T PF15397_consen 186 LENQVMQKEIVQFREEIDELEEEIPQLRAEVEQLQAQAQ 224 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344455666666666666666666666666665544443
No 140
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=93.78 E-value=8 Score=38.60 Aligned_cols=24 Identities=8% Similarity=0.076 Sum_probs=10.0
Q ss_pred HHHHHHhHHHHHHhhhcHHHHHHH
Q 020809 54 IRSLESHIDEKTQELKGKDEVVAQ 77 (321)
Q Consensus 54 i~~Les~i~e~~~eLk~kd~~I~q 77 (321)
+.-++.++.++.+++...+..+..
T Consensus 173 ~~fl~~ql~~~~~~l~~ae~~l~~ 196 (444)
T TIGR03017 173 ALWFVQQIAALREDLARAQSKLSA 196 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444333
No 141
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=93.78 E-value=3.6 Score=34.58 Aligned_cols=16 Identities=31% Similarity=0.696 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHhHH
Q 020809 47 LDQLKSKIRSLESHID 62 (321)
Q Consensus 47 l~qlk~ki~~Les~i~ 62 (321)
++.+.+.|..+++++.
T Consensus 18 ve~L~s~lr~~E~E~~ 33 (120)
T PF12325_consen 18 VERLQSQLRRLEGELA 33 (120)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444433333
No 142
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=93.66 E-value=0.15 Score=49.55 Aligned_cols=44 Identities=20% Similarity=0.311 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 107 AAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAE 150 (321)
Q Consensus 107 ~eeq~~~~~~RireL~k~Ie~Lk~ele~~~~kk~~LEa~a~e~e 150 (321)
....+..++..+..+.-.|..|+..+-.+--.+..|+.|.+.+|
T Consensus 110 h~ssIS~Lqs~v~~lsTdvsNLksdVSt~aL~ItdLe~RV~~LE 153 (326)
T PF04582_consen 110 HSSSISDLQSSVSALSTDVSNLKSDVSTQALNITDLESRVKALE 153 (326)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHhhhhhhhhhhhhhhhhhhhcchHhhHHHHHHHHh
Confidence 34444455555555666666666666555555555555555544
No 143
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=93.62 E-value=3.9 Score=44.18 Aligned_cols=12 Identities=25% Similarity=0.434 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHH
Q 020809 109 EQVDKAHARADE 120 (321)
Q Consensus 109 eq~~~~~~Rire 120 (321)
++.+.+.+|+..
T Consensus 607 d~Qe~L~~R~~~ 618 (717)
T PF10168_consen 607 DKQEKLMKRVDR 618 (717)
T ss_pred HHHHHHHHHHHH
Confidence 333344444443
No 144
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=93.61 E-value=5.1 Score=42.93 Aligned_cols=122 Identities=19% Similarity=0.217 Sum_probs=54.4
Q ss_pred HHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 54 IRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESE 133 (321)
Q Consensus 54 i~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~qk~~~~~~eeq~~~~~~RireL~k~Ie~Lk~ele 133 (321)
...|....+.+..++..+....+.....|..++.+...+++....+-+ ....+.......++.+-++...++.|+-..+
T Consensus 498 ~k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq~~~lt~~~~~l~~-el~~~~~~le~~kk~~~e~~~~~~~Lq~~~e 576 (698)
T KOG0978|consen 498 HKLLREEKSKLEEQILTLKASVDKLELKIGKLEEQERGLTSNESKLIK-ELTTLTQSLEMLKKKAQEAKQSLEDLQIELE 576 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444444444422 2223333333444444444444444544444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 134 KQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRK 176 (321)
Q Consensus 134 ~~~~kk~~LEa~a~e~ekk~~el~~~le~Lek~~~Eqk~~l~e 176 (321)
....+...++..-++....+.....+...++.......+.+..
T Consensus 577 k~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~ 619 (698)
T KOG0978|consen 577 KSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLER 619 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444444444444443
No 145
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=93.56 E-value=6.7 Score=37.40 Aligned_cols=15 Identities=27% Similarity=0.231 Sum_probs=7.6
Q ss_pred hccCchhHHHHHHHH
Q 020809 206 HSAWLPPWLAVHLLQ 220 (321)
Q Consensus 206 ~g~~l~Pwla~~~~~ 220 (321)
++.|+|.|+-.=.-.
T Consensus 259 ~~~~~~~~~i~llfi 273 (301)
T PF14362_consen 259 PSALLASLFIFLLFI 273 (301)
T ss_pred CcHHHHHHHHHHHHH
Confidence 355666665544333
No 146
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=93.35 E-value=3.9 Score=34.60 Aligned_cols=45 Identities=20% Similarity=0.320 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 106 NAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAE 150 (321)
Q Consensus 106 ~~eeq~~~~~~RireL~k~Ie~Lk~ele~~~~kk~~LEa~a~e~e 150 (321)
..++-...+++|+..|++.++.+..++...+.....+......+.
T Consensus 91 ~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~ 135 (140)
T PRK03947 91 DLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQ 135 (140)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777777778888888877777777777766655555444443
No 147
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=93.35 E-value=12 Score=39.19 Aligned_cols=28 Identities=32% Similarity=0.423 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 72 DEVVAQKEKAIQDKSERIVSLQKELSSL 99 (321)
Q Consensus 72 d~~I~q~ek~i~e~~~~I~~Lq~eI~~~ 99 (321)
+..|..+..+|.+++.+|..|+.+++++
T Consensus 293 ~~~l~~l~~Eie~kEeE~e~lq~~~d~L 320 (581)
T KOG0995|consen 293 EKKLEMLKSEIEEKEEEIEKLQKENDEL 320 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444
No 148
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=93.30 E-value=6.2 Score=35.83 Aligned_cols=52 Identities=17% Similarity=0.230 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 48 DQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSL 99 (321)
Q Consensus 48 ~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~ 99 (321)
..++.-|.+++..+......+...-..-..++..+.+....+..++......
T Consensus 26 ~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~A 77 (221)
T PF04012_consen 26 KMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELA 77 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666666666666666555555556666666666666555555444
No 149
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=93.28 E-value=15 Score=40.28 Aligned_cols=31 Identities=16% Similarity=0.214 Sum_probs=19.0
Q ss_pred HHHhhCcc-hHHHHHHHHHHHHHhhcc-ccchh
Q 020809 228 HWNAHGKP-AMDVAIQKALEKKAQAGK-WVQPH 258 (321)
Q Consensus 228 ~~~~hg~p-~~~~~~~~~~~k~~~~~~-~~~ph 258 (321)
||+--+-| .+=+....+|.-..++.+ |..|-
T Consensus 613 ~~~~~~~p~~Llst~~~~s~n~~~~e~~~~~yl 645 (980)
T KOG0980|consen 613 HWRCLTSPDFLLSTAENASVNATQFETSFNNYL 645 (980)
T ss_pred ccCcCCCHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 44433333 556677778887777776 65543
No 150
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=93.28 E-value=6.5 Score=35.99 Aligned_cols=17 Identities=24% Similarity=0.384 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 020809 118 ADELEKQIDNLKKESEK 134 (321)
Q Consensus 118 ireL~k~Ie~Lk~ele~ 134 (321)
+..|+.++..|+..+..
T Consensus 89 l~~le~El~~Lr~~l~~ 105 (202)
T PF06818_consen 89 LGQLEAELAELREELAC 105 (202)
T ss_pred hhhhHHHHHHHHHHHHh
Confidence 33344444444443333
No 151
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=93.26 E-value=7.1 Score=36.42 Aligned_cols=10 Identities=40% Similarity=0.451 Sum_probs=3.5
Q ss_pred HHHHHHHHHH
Q 020809 49 QLKSKIRSLE 58 (321)
Q Consensus 49 qlk~ki~~Le 58 (321)
+++.....+.
T Consensus 31 ~~~~~~~~l~ 40 (302)
T PF10186_consen 31 QLKEENEELR 40 (302)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 152
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=93.22 E-value=18 Score=41.02 Aligned_cols=29 Identities=7% Similarity=0.115 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 163 LQKINDEQKSKIRKTERALKVAEEEMMRA 191 (321)
Q Consensus 163 Lek~~~Eqk~~l~elE~~lq~~Eeei~kl 191 (321)
.+...+....+++.++...+.+++.+...
T Consensus 206 ~~~q~dl~~~~~~~l~~~~~~Lq~~in~k 234 (1109)
T PRK10929 206 ARLRSELAKKRSQQLDAYLQALRNQLNSQ 234 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444455555555555555555543
No 153
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=93.11 E-value=0.21 Score=48.61 Aligned_cols=42 Identities=19% Similarity=0.222 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 143 EARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVA 184 (321)
Q Consensus 143 Ea~a~e~ekk~~el~~~le~Lek~~~Eqk~~l~elE~~lq~~ 184 (321)
......+...+..+...+..|...+.-+.-.|-.++...+.+
T Consensus 111 ~ssIS~Lqs~v~~lsTdvsNLksdVSt~aL~ItdLe~RV~~L 152 (326)
T PF04582_consen 111 SSSISDLQSSVSALSTDVSNLKSDVSTQALNITDLESRVKAL 152 (326)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHhhhhhhhhhhhhhhhhhhhcchHhhHHHHHHHH
Confidence 333333444444444444455555555555555555444433
No 154
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=93.11 E-value=9.4 Score=37.37 Aligned_cols=58 Identities=16% Similarity=0.093 Sum_probs=33.4
Q ss_pred chhHHHHHHHHHHHHHHhHHHhhCcchHHHHHHHHHHHHHhhccccchhHHhhh-hhhhhh
Q 020809 210 LPPWLAVHLLQCQSLIETHWNAHGKPAMDVAIQKALEKKAQAGKWVQPHVETIK-AKWIPA 269 (321)
Q Consensus 210 l~Pwla~~~~~~~~~~~~~~~~hg~p~~~~~~~~~~~k~~~~~~~~~ph~~~~~-~k~~p~ 269 (321)
|..-|..+..||......+-..+.-.+-+.++--|.- +-+.=|-.+|=+.+- ..|+||
T Consensus 285 Li~~L~~E~~RW~~~~~~l~~~~~~l~GD~llaaa~i--sY~G~f~~~~R~~l~~~~W~~~ 343 (344)
T PF12777_consen 285 LISGLSGEKERWSEQIEELEEQLKNLVGDSLLAAAFI--SYLGPFTPEYRQELLKKMWKPY 343 (344)
T ss_dssp HHHCCHHHHHCCHCHHHHHHHHHHHHHHHHHHHHHHH--HCCCCTSHHHHHHHHHHH----
T ss_pred HHhhhcchhhhHHHHHHHHHHHhcccHHHHHHHHHHH--HHcCCCCHHHHHHHHHHhcccc
Confidence 5555777888888888888888888888888755443 223333333333332 235554
No 155
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=93.06 E-value=4.8 Score=33.84 Aligned_cols=34 Identities=12% Similarity=0.184 Sum_probs=14.1
Q ss_pred HHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 65 TQELKGKDEVVAQKEKAIQDKSERIVSLQKELSS 98 (321)
Q Consensus 65 ~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~ 98 (321)
...|+.++.++..++.++..++.+-+.+..+|-.
T Consensus 22 ~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~ 55 (120)
T PF12325_consen 22 QSQLRRLEGELASLQEELARLEAERDELREEIVK 55 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444444444433
No 156
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=93.03 E-value=0.028 Score=61.48 Aligned_cols=40 Identities=30% Similarity=0.312 Sum_probs=0.0
Q ss_pred HHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 62 DEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQK 101 (321)
Q Consensus 62 ~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~qk 101 (321)
.+++.+|..+...-..+++.-..+...+..|.+.++.+++
T Consensus 134 ~eL~eqle~lqk~k~~lEK~k~~l~~e~~dL~~~l~~~~k 173 (859)
T PF01576_consen 134 AELNEQLEQLQKQKAKLEKEKSQLEAELDDLQAQLDSLQK 173 (859)
T ss_dssp ----------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3333333333333344444444444444444444444443
No 157
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=92.76 E-value=9.1 Score=36.31 Aligned_cols=127 Identities=17% Similarity=0.190 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 020809 43 LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELE 122 (321)
Q Consensus 43 l~~el~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~qk~~~~~~eeq~~~~~~RireL~ 122 (321)
+.+.-.+++..+.+.+....++..+ ++.+++++++...++....+.|.-+...++ ...+.+...+...+..|+
T Consensus 25 ykq~f~~~reEl~EFQegSrE~Eae---lesqL~q~etrnrdl~t~nqrl~~E~e~~K----ek~e~q~~q~y~q~s~Le 97 (333)
T KOG1853|consen 25 YKQHFLQMREELNEFQEGSREIEAE---LESQLDQLETRNRDLETRNQRLTTEQERNK----EKQEDQRVQFYQQESQLE 97 (333)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 4556677788888888777777654 477888899999888888888888887773 334555556666677777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 123 KQIDNLKKESEKQQKEKEALEARAIEAEK-------KISDLSAKLEKLQKINDEQKSKIRK 176 (321)
Q Consensus 123 k~Ie~Lk~ele~~~~kk~~LEa~a~e~ek-------k~~el~~~le~Lek~~~Eqk~~l~e 176 (321)
+.+....+..+.++..+.+||..-.+++. .++.+.+.+++....++-.+..|++
T Consensus 98 ddlsqt~aikeql~kyiReLEQaNDdLErakRati~sleDfeqrLnqAIErnAfLESELdE 158 (333)
T KOG1853|consen 98 DDLSQTHAIKEQLRKYIRELEQANDDLERAKRATIYSLEDFEQRLNQAIERNAFLESELDE 158 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 77777777777777777666666555553 3444555555544444444444443
No 158
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=92.66 E-value=8.5 Score=35.74 Aligned_cols=37 Identities=8% Similarity=0.210 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHH
Q 020809 43 LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKE 79 (321)
Q Consensus 43 l~~el~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~e 79 (321)
+++-|.++++.+..+...+..+...-+....++++++
T Consensus 29 l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~ 65 (225)
T COG1842 29 LEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQ 65 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444333333333333333
No 159
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=92.61 E-value=7.7 Score=35.10 Aligned_cols=94 Identities=21% Similarity=0.371 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------hhHHHHHH--
Q 020809 43 LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKK----------ETLNAAEQ-- 110 (321)
Q Consensus 43 l~~el~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~qk~----------~~~~~eeq-- 110 (321)
-++-+++|+..+.+.+..+.+....|..-...+............++..|..-+...+.. ...++.++
T Consensus 65 Kq~iveqLe~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q~~~L~~~l~~a~~nl~~a~~~a~~AQ~el~eK~q 144 (188)
T PF05335_consen 65 KQQIVEQLEQEVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQLETLKAALKAAQANLANAEQVAEGAQQELAEKTQ 144 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445567777777777777777777776666666666555555555555555554444332 22333333
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 111 -VDKAHARADELEKQIDNLKKESEKQQ 136 (321)
Q Consensus 111 -~~~~~~RireL~k~Ie~Lk~ele~~~ 136 (321)
++.++.|+..|.+++...+.+.+..+
T Consensus 145 LLeaAk~Rve~L~~QL~~Ar~D~~~tk 171 (188)
T PF05335_consen 145 LLEAAKRRVEELQRQLQAARADYEKTK 171 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555444
No 160
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=92.44 E-value=18 Score=39.06 Aligned_cols=61 Identities=13% Similarity=0.191 Sum_probs=38.3
Q ss_pred chHHHHHHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 41 SPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQK 101 (321)
Q Consensus 41 ~~l~~el~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~qk 101 (321)
+.+..+|.+++..+.++...++....+...+......+......++.+...|..+|...+.
T Consensus 30 ~~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~ 90 (717)
T PF09730_consen 30 AYLQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKF 90 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666666666666666666666666666666666666666666533
No 161
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=92.36 E-value=8.4 Score=34.96 Aligned_cols=51 Identities=29% Similarity=0.278 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 106 NAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDL 156 (321)
Q Consensus 106 ~~eeq~~~~~~RireL~k~Ie~Lk~ele~~~~kk~~LEa~a~e~ekk~~el 156 (321)
.+++....+-++.+.++++...|-..++..+.+...+-.....+.++..++
T Consensus 78 ~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL 128 (193)
T PF14662_consen 78 SLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKEL 128 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHH
Confidence 344444444444444444433333333333333333333333333333333
No 162
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=92.29 E-value=3.6 Score=43.24 Aligned_cols=29 Identities=31% Similarity=0.487 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 118 ADELEKQIDNLKKESEKQQKEKEALEARA 146 (321)
Q Consensus 118 ireL~k~Ie~Lk~ele~~~~kk~~LEa~a 146 (321)
++.+...|+.|...+.........|+.+.
T Consensus 476 i~~~~~~I~~L~~~L~e~~~~ve~L~~~l 504 (652)
T COG2433 476 IRARDRRIERLEKELEEKKKRVEELERKL 504 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444333
No 163
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=92.29 E-value=7.1 Score=33.92 Aligned_cols=44 Identities=30% Similarity=0.392 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 105 LNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIE 148 (321)
Q Consensus 105 ~~~eeq~~~~~~RireL~k~Ie~Lk~ele~~~~kk~~LEa~a~e 148 (321)
.+.++-++.+++|+.+|++.++.+...+...-.....++..+..
T Consensus 90 ~~~~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~ 133 (145)
T COG1730 90 KSADEAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQ 133 (145)
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556566666666666666655555555555444444444333
No 164
>PF13514 AAA_27: AAA domain
Probab=92.25 E-value=24 Score=39.94 Aligned_cols=32 Identities=25% Similarity=0.391 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 145 RAIEAEKKISDLSAKLEKLQKINDEQKSKIRK 176 (321)
Q Consensus 145 ~a~e~ekk~~el~~~le~Lek~~~Eqk~~l~e 176 (321)
....++..+..++..+..+.......+..+..
T Consensus 897 ~l~~l~~~l~~l~~~~~~l~~~~~~~~~~l~~ 928 (1111)
T PF13514_consen 897 ELEELEEELEELEEELEELQEERAELEQELEA 928 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333444444444433333333333
No 165
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=92.23 E-value=1.9 Score=40.81 Aligned_cols=51 Identities=16% Similarity=0.235 Sum_probs=30.2
Q ss_pred HHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 51 KSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQK 101 (321)
Q Consensus 51 k~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~qk 101 (321)
+.++..|+..+...++-+-++...|+.++.+|.++..+|..++.+|+.++.
T Consensus 39 ~~r~~~le~~~~~~~~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~ 89 (263)
T PRK10803 39 EDRVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVE 89 (263)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 455566666666655555555666666666666666666666666655533
No 166
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.20 E-value=21 Score=39.06 Aligned_cols=55 Identities=13% Similarity=0.125 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccCchhHHHHHHHHHHH
Q 020809 167 NDEQKSKIRKTERALKVAEEEMMRAKFEATSRSKELTEVHSAWLPPWLAVHLLQCQS 223 (321)
Q Consensus 167 ~~Eqk~~l~elE~~lq~~Eeei~kl~~ea~~~a~ql~e~~g~~l~Pwla~~~~~~~~ 223 (321)
..+....++.+.......++++..+-....+.+..+..-| -.-|-+++...+...
T Consensus 801 l~e~~~~l~~~q~e~~~~keq~~t~~~~tsa~a~~le~m~--~~~~~la~e~~~ieq 855 (970)
T KOG0946|consen 801 LSEESTRLQELQSELTQLKEQIQTLLERTSAAADSLESMG--STEKNLANELKLIEQ 855 (970)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhh--ccccchhhHHHHHHH
Confidence 4444444555555555555555544333333443333322 234555555544443
No 167
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=92.15 E-value=8.2 Score=36.59 Aligned_cols=79 Identities=24% Similarity=0.341 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 105 LNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVA 184 (321)
Q Consensus 105 ~~~eeq~~~~~~RireL~k~Ie~Lk~ele~~~~kk~~LEa~a~e~ekk~~el~~~le~Lek~~~Eqk~~l~elE~~lq~~ 184 (321)
..++.+.+.++.|.|+|......|.-+.+.++ +.++.....--..+..+..-+.++..+..++..-|.+++++-+.+
T Consensus 48 aelesqL~q~etrnrdl~t~nqrl~~E~e~~K---ek~e~q~~q~y~q~s~Leddlsqt~aikeql~kyiReLEQaNDdL 124 (333)
T KOG1853|consen 48 AELESQLDQLETRNRDLETRNQRLTTEQERNK---EKQEDQRVQFYQQESQLEDDLSQTHAIKEQLRKYIRELEQANDDL 124 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence 34555666666677777776666666666655 444555555555555666666666666666666666666665555
Q ss_pred HH
Q 020809 185 EE 186 (321)
Q Consensus 185 Ee 186 (321)
|.
T Consensus 125 Er 126 (333)
T KOG1853|consen 125 ER 126 (333)
T ss_pred HH
Confidence 43
No 168
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=92.09 E-value=23 Score=39.45 Aligned_cols=37 Identities=27% Similarity=0.346 Sum_probs=21.8
Q ss_pred HHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 65 TQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQK 101 (321)
Q Consensus 65 ~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~qk 101 (321)
-.+|.++...-.+++.........|..|..+|+.+.+
T Consensus 180 h~eL~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~k 216 (1072)
T KOG0979|consen 180 HIELMDLREDEKSLEDKLTTKTEKLNRLEDEIDKLEK 216 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3445555555666666666666666666666665544
No 169
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=92.00 E-value=5.9 Score=32.35 Aligned_cols=34 Identities=12% Similarity=0.277 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHH
Q 020809 49 QLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAI 82 (321)
Q Consensus 49 qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i 82 (321)
++-.+.+.++.++..+..++..++..+.+.+.-+
T Consensus 7 ~~~~~~q~~q~~~~~l~~q~~~le~~~~E~~~v~ 40 (110)
T TIGR02338 7 NQLAQLQQLQQQLQAVATQKQQVEAQLKEAEKAL 40 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444333
No 170
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=91.88 E-value=19 Score=38.03 Aligned_cols=57 Identities=19% Similarity=0.258 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 89 IVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEAR 145 (321)
Q Consensus 89 I~~Lq~eI~~~qk~~~~~~eeq~~~~~~RireL~k~Ie~Lk~ele~~~~kk~~LEa~ 145 (321)
+..++.......++.+..+.+..+..+.+++.+++-|..++..++....+...+++.
T Consensus 169 a~~~e~~~~q~~~e~e~~L~~~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~ 225 (629)
T KOG0963|consen 169 ANETEEKLEQEWAEREAGLKDEEQNLQEQLEELEKKISSLQSAIEDTQNELFDLKSK 225 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHh
Confidence 445555555555556666777777777777777777777777777666665555544
No 171
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=91.84 E-value=7 Score=32.94 Aligned_cols=22 Identities=23% Similarity=0.289 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 020809 159 KLEKLQKINDEQKSKIRKTERA 180 (321)
Q Consensus 159 ~le~Lek~~~Eqk~~l~elE~~ 180 (321)
....+++.+.+.+..++++...
T Consensus 99 qk~~le~e~~~~~~r~~dL~~Q 120 (132)
T PF07926_consen 99 QKEQLEKELSELEQRIEDLNEQ 120 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444433
No 172
>PF13166 AAA_13: AAA domain
Probab=91.77 E-value=20 Score=38.12 Aligned_cols=18 Identities=6% Similarity=-0.324 Sum_probs=10.4
Q ss_pred HHHhhCcchHHHHHHHHH
Q 020809 228 HWNAHGKPAMDVAIQKAL 245 (321)
Q Consensus 228 ~~~~hg~p~~~~~~~~~~ 245 (321)
+.-.|.-+.|..+.....
T Consensus 565 iIlTHn~~F~~~l~~~~~ 582 (712)
T PF13166_consen 565 IILTHNLYFFKELKKWFE 582 (712)
T ss_pred EEEeCcHHHHHHHHHHhh
Confidence 444566666666655544
No 173
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=91.69 E-value=15 Score=36.56 Aligned_cols=19 Identities=11% Similarity=0.382 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHhHHH
Q 020809 45 IELDQLKSKIRSLESHIDE 63 (321)
Q Consensus 45 ~el~qlk~ki~~Les~i~e 63 (321)
.++++++.++...+.+..+
T Consensus 215 ~~l~~l~~~l~~~~~~~~~ 233 (444)
T TIGR03017 215 ARLNELSAQLVAAQAQVMD 233 (444)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4555555555555544433
No 174
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=91.51 E-value=13 Score=35.51 Aligned_cols=76 Identities=22% Similarity=0.272 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 020809 117 RADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEAT 196 (321)
Q Consensus 117 RireL~k~Ie~Lk~ele~~~~kk~~LEa~a~e~ekk~~el~~~le~Lek~~~Eqk~~l~elE~~lq~~Eeei~kl~~ea~ 196 (321)
.+..|+++...|-...+........|...+..-+..+.-++ .....-+.+|+.++..+.....++.+.+..+.
T Consensus 61 e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lE-------gQl~s~Kkqie~Leqelkr~KsELErsQ~~~~ 133 (307)
T PF10481_consen 61 EYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLE-------GQLNSCKKQIEKLEQELKRCKSELERSQQAAS 133 (307)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34445555555555555554444555555555444444444 44444556888888888888888888877766
Q ss_pred hhh
Q 020809 197 SRS 199 (321)
Q Consensus 197 ~~a 199 (321)
...
T Consensus 134 ~~~ 136 (307)
T PF10481_consen 134 SGD 136 (307)
T ss_pred cCC
Confidence 443
No 175
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=91.45 E-value=1.7 Score=38.11 Aligned_cols=63 Identities=19% Similarity=0.349 Sum_probs=38.6
Q ss_pred CCchHHHHHHHHHHHHHHHHHhHHHHHHhhhcHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 39 DSSPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVV--AQKEKAIQDKSERIVSLQKELSSLQK 101 (321)
Q Consensus 39 ~~~~l~~el~qlk~ki~~Les~i~e~~~eLk~kd~~I--~q~ek~i~e~~~~I~~Lq~eI~~~qk 101 (321)
+...+..++.+++.++.+++.....+..+|..+...+ .++...|..++.+|..+++.+..++.
T Consensus 73 el~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 73 ELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455566666666666666666666666666665554 44555666666666666666665544
No 176
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=91.38 E-value=13 Score=34.94 Aligned_cols=115 Identities=23% Similarity=0.393 Sum_probs=54.0
Q ss_pred HHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 58 ESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQK 137 (321)
Q Consensus 58 es~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~qk~~~~~~eeq~~~~~~RireL~k~Ie~Lk~ele~~~~ 137 (321)
+....++...|....+.....+..+.+....+..|..+....+. ....+..+..++...+..|..+......
T Consensus 4 Er~k~Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aee--------ea~~Le~k~~eaee~~~rL~~~~~~~~e 75 (246)
T PF00769_consen 4 EREKQELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEE--------EAEELEQKRQEAEEEKQRLEEEAEMQEE 75 (246)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHH-------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555666666666666666666666665544432 2334445666666666666666666665
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 138 EKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEE 187 (321)
Q Consensus 138 kk~~LEa~a~e~ekk~~el~~~le~Lek~~~Eqk~~l~elE~~lq~~Eee 187 (321)
.+..|+.+..+.+..+.. |..........-..+...+..+...
T Consensus 76 Ek~~Le~e~~e~~~~i~~-------l~ee~~~ke~Ea~~lq~el~~ar~~ 118 (246)
T PF00769_consen 76 EKEQLEQELREAEAEIAR-------LEEESERKEEEAEELQEELEEARED 118 (246)
T ss_dssp -----HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555544444 4444444444444444444333333
No 177
>PF14282 FlxA: FlxA-like protein
Probab=91.19 E-value=2.3 Score=34.78 Aligned_cols=58 Identities=21% Similarity=0.357 Sum_probs=38.3
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHh----hhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 42 PLKIELDQLKSKIRSLESHIDEKTQE----LKGKDEVVAQKEKAIQDKSERIVSLQKELSSL 99 (321)
Q Consensus 42 ~l~~el~qlk~ki~~Les~i~e~~~e----Lk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~ 99 (321)
+....+..|+.+|..|+.++.++... -+.+...+..++..|..++.+|..++.+...-
T Consensus 16 ~~~~~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~~~~ 77 (106)
T PF14282_consen 16 SSDSQIEQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQQAEQ 77 (106)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34788999999999999999888772 23455555555555555555555555554333
No 178
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=91.18 E-value=28 Score=38.58 Aligned_cols=39 Identities=13% Similarity=0.240 Sum_probs=20.4
Q ss_pred HHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 62 DEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQ 100 (321)
Q Consensus 62 ~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~q 100 (321)
....+++..+..++.++...-+.++.+++.+++.|..++
T Consensus 399 qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlk 437 (1243)
T KOG0971|consen 399 QKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLK 437 (1243)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555555555555555555553
No 179
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=91.11 E-value=8.7 Score=32.59 Aligned_cols=59 Identities=19% Similarity=0.248 Sum_probs=35.9
Q ss_pred chHHHHHHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 41 SPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSL 99 (321)
Q Consensus 41 ~~l~~el~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~ 99 (321)
.++..+++.+..+...|...=+...++.+...+.+...=....++...|...-..|...
T Consensus 23 ~~v~~~l~~LEae~q~L~~kE~~r~~~~k~~ae~a~~~L~~~~~~~~~i~e~~~kl~~~ 81 (126)
T PF09403_consen 23 ASVESELNQLEAEYQQLEQKEEARYNEEKQEAEAAEAELAELKELYAEIEEKIEKLKQD 81 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Confidence 34667888888888888888777766666655544444444444444444444444333
No 180
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=91.09 E-value=20 Score=36.84 Aligned_cols=51 Identities=6% Similarity=0.138 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHhHHHHHHhhh---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 49 QLKSKIRSLESHIDEKTQELK---GKDEVVAQKEKAIQDKSERIVSLQKELSSL 99 (321)
Q Consensus 49 qlk~ki~~Les~i~e~~~eLk---~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~ 99 (321)
.+...|..|+++-+.+-..|. ..+..|..+...-..+.+..+.+++-....
T Consensus 268 ~i~~~i~~lk~~n~~l~e~i~ea~k~s~~i~~l~ek~r~l~~D~nk~~~~~~~m 321 (622)
T COG5185 268 IINTDIANLKTQNDNLYEKIQEAMKISQKIKTLREKWRALKSDSNKYENYVNAM 321 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 333444444444333333322 234444444444555555555555555444
No 181
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=90.95 E-value=7.3 Score=31.43 Aligned_cols=19 Identities=16% Similarity=0.307 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHhHHHH
Q 020809 46 ELDQLKSKIRSLESHIDEK 64 (321)
Q Consensus 46 el~qlk~ki~~Les~i~e~ 64 (321)
++++++.++..+.+++..+
T Consensus 7 ~~q~l~~~~~~l~~~~~~l 25 (105)
T cd00632 7 QLQQLQQQLQAYIVQRQKV 25 (105)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444333
No 182
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=90.93 E-value=8.9 Score=32.39 Aligned_cols=39 Identities=21% Similarity=0.408 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHH
Q 020809 44 KIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAI 82 (321)
Q Consensus 44 ~~el~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i 82 (321)
+.+++++......++..++.+...+..+...|.+...-+
T Consensus 5 ~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~ 43 (140)
T PRK03947 5 EQELEELAAQLQALQAQIEALQQQLEELQASINELDTAK 43 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666655555555555555444444
No 183
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=90.68 E-value=11 Score=33.12 Aligned_cols=29 Identities=14% Similarity=0.002 Sum_probs=21.3
Q ss_pred hhhhhccCchhHHHHHHHHHHHHHHhHHH
Q 020809 202 LTEVHSAWLPPWLAVHLLQCQSLIETHWN 230 (321)
Q Consensus 202 l~e~~g~~l~Pwla~~~~~~~~~~~~~~~ 230 (321)
+...||.+--|-|--.|..+......+..
T Consensus 131 l~~~~~~~~~P~ll~Dy~~~~~~~~~l~~ 159 (177)
T PF13870_consen 131 LRQQGGLLGVPALLRDYDKTKEEVEELRK 159 (177)
T ss_pred HHHhcCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 44567888889998888888877665543
No 184
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=90.68 E-value=5.6 Score=32.13 Aligned_cols=37 Identities=8% Similarity=0.232 Sum_probs=21.4
Q ss_pred HHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHH
Q 020809 50 LKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKS 86 (321)
Q Consensus 50 lk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~ 86 (321)
+-.+.+.++..+..+..++..++..+.+...-+.++.
T Consensus 4 ~~~~~q~l~~~~~~l~~~~~~l~~~~~E~~~v~~EL~ 40 (105)
T cd00632 4 QLAQLQQLQQQLQAYIVQRQKVEAQLNENKKALEELE 40 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666666666666655555554444
No 185
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=90.67 E-value=2.5 Score=30.90 Aligned_cols=45 Identities=20% Similarity=0.339 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 020809 74 VVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARAD 119 (321)
Q Consensus 74 ~I~q~ek~i~e~~~~I~~Lq~eI~~~qk~~~~~~eeq~~~~~~Rir 119 (321)
+|+++...+..+..+|+.|.++|..++.+ -....+....++.||.
T Consensus 4 kid~Ls~dVq~L~~kvdqLs~dv~~lr~~-v~~ak~EAaRAN~RlD 48 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKVDQLSSDVNALRAD-VQAAKEEAARANQRLD 48 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 34444444444445555555555444332 1222333445555554
No 186
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=90.63 E-value=24 Score=36.92 Aligned_cols=38 Identities=16% Similarity=0.224 Sum_probs=24.3
Q ss_pred HHHHhhccccchhHHhhhhhhhhh--hhhhHHHHHhccch
Q 020809 246 EKKAQAGKWVQPHVETIKAKWIPA--VKEQWVVFTTNVEP 283 (321)
Q Consensus 246 ~k~~~~~~~~~ph~~~~~~k~~p~--~~~~~~~~~~~~~p 283 (321)
.......+....-.+.+..+-+|| +.+.|..+...++.
T Consensus 351 ~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ 390 (560)
T PF06160_consen 351 KQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEE 390 (560)
T ss_pred HHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHH
Confidence 445566677777777888888886 55555555444433
No 187
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=90.57 E-value=8.7 Score=40.48 Aligned_cols=80 Identities=25% Similarity=0.432 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 106 NAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAI---EAEKKISDLSAKLEKLQKINDEQKSKIRKTERALK 182 (321)
Q Consensus 106 ~~eeq~~~~~~RireL~k~Ie~Lk~ele~~~~kk~~LEa~a~---e~ekk~~el~~~le~Lek~~~Eqk~~l~elE~~lq 182 (321)
.+++....++.+++.|+..|+.++++++..+.+...+..+.. -....+..+...++.|+....+....+++|++.+.
T Consensus 426 ~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~ 505 (652)
T COG2433 426 KLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLA 505 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444433322222211 11124445556666666666666666666666665
Q ss_pred HHH
Q 020809 183 VAE 185 (321)
Q Consensus 183 ~~E 185 (321)
.+.
T Consensus 506 ~l~ 508 (652)
T COG2433 506 ELR 508 (652)
T ss_pred HHH
Confidence 554
No 188
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=90.52 E-value=9.8 Score=34.23 Aligned_cols=62 Identities=23% Similarity=0.395 Sum_probs=33.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 70 GKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESE 133 (321)
Q Consensus 70 ~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~qk~~~~~~eeq~~~~~~RireL~k~Ie~Lk~ele 133 (321)
.+...++.+++.+..+...|..|+..|....... .+- ..+..+-.++.+|+.++..|+++++
T Consensus 66 ~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r-~~~-~eR~~~l~~l~~l~~~~~~l~~el~ 127 (188)
T PF03962_consen 66 KRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGR-EES-EEREELLEELEELKKELKELKKELE 127 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccc-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555666666666666666666663322 111 2233344455666666666666665
No 189
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=90.37 E-value=2.2 Score=37.33 Aligned_cols=28 Identities=25% Similarity=0.423 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 72 DEVVAQKEKAIQDKSERIVSLQKELSSL 99 (321)
Q Consensus 72 d~~I~q~ek~i~e~~~~I~~Lq~eI~~~ 99 (321)
|.+|.+++.++.++...+..|.+++..+
T Consensus 78 d~ei~~L~~el~~l~~~~k~l~~eL~~L 105 (169)
T PF07106_consen 78 DAEIKELREELAELKKEVKSLEAELASL 105 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444
No 190
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=90.05 E-value=17 Score=34.11 Aligned_cols=31 Identities=16% Similarity=0.233 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 161 EKLQKINDEQKSKIRKTERALKVAEEEMMRA 191 (321)
Q Consensus 161 e~Lek~~~Eqk~~l~elE~~lq~~Eeei~kl 191 (321)
..+.....++..+++.+...+..+.....+.
T Consensus 181 ~~i~~~L~~~~~kL~Dl~~~l~eA~~~~~ea 211 (264)
T PF06008_consen 181 EAIRDDLNDYNAKLQDLRDLLNEAQNKTREA 211 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444445555555555554444444433
No 191
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=89.95 E-value=13 Score=32.75 Aligned_cols=51 Identities=18% Similarity=0.276 Sum_probs=30.0
Q ss_pred HHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 51 KSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQK 101 (321)
Q Consensus 51 k~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~qk 101 (321)
+.-|..+++.++++..--.....+...+.+++.++..++...-.+++.++.
T Consensus 5 ~~ti~~ie~sK~qIf~I~E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~ 55 (159)
T PF05384_consen 5 KKTIDTIESSKEQIFEIAEQARQEYERLRKELEEVKEEVSEVIEEVDKLEK 55 (159)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666665555555666666666666666666666555555543
No 192
>PRK15396 murein lipoprotein; Provisional
Probab=89.82 E-value=2.8 Score=32.70 Aligned_cols=13 Identities=31% Similarity=0.488 Sum_probs=7.1
Q ss_pred CchhHHHHHHHHH
Q 020809 1 MAASKLVIFSLFF 13 (321)
Q Consensus 1 ~~~~~~~~~~~~~ 13 (321)
|...+|++.++.+
T Consensus 1 m~~~kl~l~av~l 13 (78)
T PRK15396 1 MNRTKLVLGAVIL 13 (78)
T ss_pred CchhHHHHHHHHH
Confidence 5555666654443
No 193
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=89.75 E-value=28 Score=36.20 Aligned_cols=18 Identities=17% Similarity=0.135 Sum_probs=8.4
Q ss_pred hhhhcc-CchhHHHHHHHH
Q 020809 203 TEVHSA-WLPPWLAVHLLQ 220 (321)
Q Consensus 203 ~e~~g~-~l~Pwla~~~~~ 220 (321)
...||. |-+--++++...
T Consensus 314 ~~~~~~~fp~~~~aae~i~ 332 (596)
T KOG4360|consen 314 ALSHGHHFPQLSLAAEKIE 332 (596)
T ss_pred HHHhhhhCChhhHHHHHHH
Confidence 345564 444445555333
No 194
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=89.57 E-value=7.5 Score=36.63 Aligned_cols=54 Identities=24% Similarity=0.309 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 107 AAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKL 160 (321)
Q Consensus 107 ~eeq~~~~~~RireL~k~Ie~Lk~ele~~~~kk~~LEa~a~e~ekk~~el~~~l 160 (321)
.-.|++.++.|+.+|+.++.....++...+.+...|.++--.+-.++.-+++--
T Consensus 84 VtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylqSY~ 137 (248)
T PF08172_consen 84 VTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYLQSYN 137 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Confidence 567888889999999988888888888888777777777666666666655544
No 195
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=89.52 E-value=4.2 Score=32.75 Aligned_cols=71 Identities=20% Similarity=0.328 Sum_probs=44.8
Q ss_pred HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 61 IDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQ 136 (321)
Q Consensus 61 i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~qk~~~~~~eeq~~~~~~RireL~k~Ie~Lk~ele~~~ 136 (321)
......+|..+|.+-.++...++.+..+.+.+..+|......+ +..+.+..+++.|+.+|..+..++....
T Consensus 24 ~~~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~-----~~~~~l~~e~~~lk~~i~~le~~~~~~e 94 (108)
T PF02403_consen 24 DEEDVDEIIELDQERRELQQELEELRAERNELSKEIGKLKKAG-----EDAEELKAEVKELKEEIKELEEQLKELE 94 (108)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTT-----CCTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCc-----ccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455677778888888888888888888888888887775433 2223344455555555555554444444
No 196
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=89.47 E-value=2.5 Score=31.82 Aligned_cols=51 Identities=27% Similarity=0.400 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 142 LEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAK 192 (321)
Q Consensus 142 LEa~a~e~ekk~~el~~~le~Lek~~~Eqk~~l~elE~~lq~~Eeei~kl~ 192 (321)
++.+..+++.++.-+...++.|.+.+.+|+..|+.+++.+..+...+..+.
T Consensus 2 le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 577788888888888899999999999999999999998888877777663
No 197
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=89.46 E-value=17 Score=36.16 Aligned_cols=101 Identities=15% Similarity=0.275 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 72 DEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEK 151 (321)
Q Consensus 72 d~~I~q~ek~i~e~~~~I~~Lq~eI~~~qk~~~~~~eeq~~~~~~RireL~k~Ie~Lk~ele~~~~kk~~LEa~a~e~ek 151 (321)
..-+++..+....++.....+...++.+.. ++....++...|=.-|+.+++.+-.+-.....+..+...+.+.+..
T Consensus 219 R~hleqm~~~~~~I~~~~~~~~~~L~kl~~----~i~~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~ 294 (359)
T PF10498_consen 219 RSHLEQMKQHKKSIESALPETKSQLDKLQQ----DISKTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASE 294 (359)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344444444444444444444444444432 3333344445555556666666666666666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 152 KISDLSAKLEKLQKINDEQKSKIRK 176 (321)
Q Consensus 152 k~~el~~~le~Lek~~~Eqk~~l~e 176 (321)
-+.++...+..+.....+.+..+++
T Consensus 295 ~V~~~t~~L~~IseeLe~vK~emee 319 (359)
T PF10498_consen 295 GVSERTRELAEISEELEQVKQEMEE 319 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666665555555555555555544
No 198
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=89.42 E-value=24 Score=35.12 Aligned_cols=54 Identities=15% Similarity=0.291 Sum_probs=29.9
Q ss_pred HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 020809 66 QELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADE 120 (321)
Q Consensus 66 ~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~qk~~~~~~eeq~~~~~~Rire 120 (321)
+.|.+......+++..+.....+|..++..|..+++ ...+.+.-.-.+..|+..
T Consensus 251 ~Ri~et~~ak~~Le~ql~~~~~ei~~~e~~i~~L~~-ai~~k~~~lkvaqTRL~~ 304 (384)
T PF03148_consen 251 KRIHETQEAKNELEWQLKKTLQEIAEMEKNIEDLEK-AIRDKEGPLKVAQTRLEN 304 (384)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-HHHHHHhhHHHHHHHHhh
Confidence 334444555555556666666666666666666644 444444555555566555
No 199
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=89.38 E-value=18 Score=38.47 Aligned_cols=110 Identities=18% Similarity=0.265 Sum_probs=63.9
Q ss_pred CCCchHHHHHHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhHHHHHHHHHHH
Q 020809 38 VDSSPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKK--ETLNAAEQVDKAH 115 (321)
Q Consensus 38 ~~~~~l~~el~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~qk~--~~~~~eeq~~~~~ 115 (321)
.+-..++-.|..|......|.=+.+-++.++..--++|..+|.-|.+...+++..+.-+ |.+ ....+|.|.-.+-
T Consensus 104 ~~~~~yQerLaRLe~dkesL~LQvsvLteqVeaQgEKIrDLE~cie~kr~kLnatEEmL---QqellsrtsLETqKlDLm 180 (861)
T KOG1899|consen 104 PEYPEYQERLARLEMDKESLQLQVSVLTEQVEAQGEKIRDLETCIEEKRNKLNATEEML---QQELLSRTSLETQKLDLM 180 (861)
T ss_pred CcchHHHHHHHHHhcchhhheehHHHHHHHHHHhhhhHHHHHHHHHHHHhhhchHHHHH---HHHHHhhhhHHHHHhHHH
Confidence 35556777777777777777777777777777777788888888877777766555433 222 2234454444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 116 ARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLS 157 (321)
Q Consensus 116 ~RireL~k~Ie~Lk~ele~~~~kk~~LEa~a~e~ekk~~el~ 157 (321)
+.|.+|+-.+..++++. .+.|.+.+..+..+.+++
T Consensus 181 aevSeLKLkltalEkeq-------~e~E~K~R~se~l~qevn 215 (861)
T KOG1899|consen 181 AEVSELKLKLTALEKEQ-------NETEKKLRLSENLMQEVN 215 (861)
T ss_pred HHHHHhHHHHHHHHHHh-------hhHHHHHHhHHHHHHHHH
Confidence 45554444444443333 334444444444444444
No 200
>PRK04406 hypothetical protein; Provisional
Probab=89.31 E-value=4.3 Score=31.26 Aligned_cols=51 Identities=22% Similarity=0.241 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 140 EALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMR 190 (321)
Q Consensus 140 ~~LEa~a~e~ekk~~el~~~le~Lek~~~Eqk~~l~elE~~lq~~Eeei~k 190 (321)
..+++|..++|.++.-....++.|.+.+.+|+..|+.+.+.++.+-..+..
T Consensus 7 ~~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~ 57 (75)
T PRK04406 7 EQLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKN 57 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 457888888888888999999999999999999999999887777555443
No 201
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=89.22 E-value=19 Score=33.50 Aligned_cols=47 Identities=19% Similarity=0.241 Sum_probs=20.9
Q ss_pred HHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 55 RSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQK 101 (321)
Q Consensus 55 ~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~qk 101 (321)
.-|+.-|.+...++......+.+.-..-..++.+++.++..+...+.
T Consensus 27 ~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~ 73 (225)
T COG1842 27 KMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEE 73 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444444444444433
No 202
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=89.20 E-value=1.5 Score=43.49 Aligned_cols=11 Identities=45% Similarity=0.709 Sum_probs=0.0
Q ss_pred HHHHHHHHHHH
Q 020809 88 RIVSLQKELSS 98 (321)
Q Consensus 88 ~I~~Lq~eI~~ 98 (321)
.+..+..+|..
T Consensus 106 ~~~elkkEie~ 116 (370)
T PF02994_consen 106 RIKELKKEIEN 116 (370)
T ss_dssp -----------
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 203
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=89.19 E-value=21 Score=34.17 Aligned_cols=48 Identities=25% Similarity=0.388 Sum_probs=24.3
Q ss_pred HHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 52 SKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSL 99 (321)
Q Consensus 52 ~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~ 99 (321)
.+|.+|+++.+.+.++-..+.-.|+.++.-+..-..+...-.+++..+
T Consensus 18 qKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~L 65 (307)
T PF10481_consen 18 QKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSAL 65 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 456666666666655555555555555544444444433333333333
No 204
>PF13166 AAA_13: AAA domain
Probab=89.10 E-value=34 Score=36.34 Aligned_cols=14 Identities=29% Similarity=0.430 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHH
Q 020809 84 DKSERIVSLQKELS 97 (321)
Q Consensus 84 e~~~~I~~Lq~eI~ 97 (321)
++...+..+...|+
T Consensus 326 ~~~~~~~~l~~~l~ 339 (712)
T PF13166_consen 326 ELKSAIEALKEELE 339 (712)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333443333
No 205
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=89.08 E-value=29 Score=37.47 Aligned_cols=47 Identities=11% Similarity=0.232 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 141 ALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRA 191 (321)
Q Consensus 141 ~LEa~a~e~ekk~~el~~~le~Lek~~~Eqk~~l~elE~~lq~~Eeei~kl 191 (321)
.|..+.+.++.+++.++..+..+-. .+..+..++++.+..+..+..+
T Consensus 343 ~l~~~~~~L~~~~~~l~~~~~~~p~----~e~~~~~L~R~~~~~~~lY~~l 389 (726)
T PRK09841 343 ALLEKRQTLEQERKRLNKRVSAMPS----TQQEVLRLSRDVEAGRAVYLQL 389 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444443332 3444445555555555544443
No 206
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=88.99 E-value=17 Score=32.84 Aligned_cols=106 Identities=19% Similarity=0.282 Sum_probs=46.0
Q ss_pred hhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 68 LKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAI 147 (321)
Q Consensus 68 Lk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~qk~~~~~~eeq~~~~~~RireL~k~Ie~Lk~ele~~~~kk~~LEa~a~ 147 (321)
|.++...+++++.++.+-+.-+......|..++. .-..... -......++..|+.-+..-+......+.-..
T Consensus 62 L~GKq~iveqLe~ev~EAe~vV~ee~~sL~~aq~-na~aA~~-------aa~~A~~q~~~L~~~l~~a~~nl~~a~~~a~ 133 (188)
T PF05335_consen 62 LAGKQQIVEQLEQEVREAEAVVQEEKASLQQAQA-NAQAAQR-------AAQQAQQQLETLKAALKAAQANLANAEQVAE 133 (188)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555554444444444433 1122222 2222333344444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 148 EAEKKISDLSAKLEKLQKINDEQKSKIRKTERAL 181 (321)
Q Consensus 148 e~ekk~~el~~~le~Lek~~~Eqk~~l~elE~~l 181 (321)
.+...+.+-...++......+....++.....++
T Consensus 134 ~AQ~el~eK~qLLeaAk~Rve~L~~QL~~Ar~D~ 167 (188)
T PF05335_consen 134 GAQQELAEKTQLLEAAKRRVEELQRQLQAARADY 167 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444445444444444444444444333
No 207
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=88.93 E-value=32 Score=35.88 Aligned_cols=43 Identities=5% Similarity=0.017 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHH
Q 020809 43 LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDK 85 (321)
Q Consensus 43 l~~el~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~ 85 (321)
+..+..++..+...+...+.+...+.......++.++-.+.++
T Consensus 159 ~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~EL 201 (563)
T TIGR00634 159 KVKAYRELYQAWLKARQQLKDRQQKEQELAQRLDFLQFQLEEL 201 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444333334444444443333333
No 208
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=88.86 E-value=42 Score=37.12 Aligned_cols=75 Identities=33% Similarity=0.484 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 117 RADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRA 191 (321)
Q Consensus 117 RireL~k~Ie~Lk~ele~~~~kk~~LEa~a~e~ekk~~el~~~le~Lek~~~Eqk~~l~elE~~lq~~Eeei~kl 191 (321)
|.+.+...++.+...+...-.....+.........+.......+..+.....+....+..+...+......+..+
T Consensus 362 ~~~~l~~~~~~l~~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~~ 436 (908)
T COG0419 362 RLKELEERLEELEKELEKALERLKQLEEAIQELKEELAELSAALEEIQEELEELEKELEELERELEELEEEIKKL 436 (908)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444442222222233333333333333344444444444444444444444444444444433
No 209
>PRK02119 hypothetical protein; Provisional
Probab=88.82 E-value=2.9 Score=32.02 Aligned_cols=51 Identities=16% Similarity=0.268 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 48 DQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSS 98 (321)
Q Consensus 48 ~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~ 98 (321)
..+..+|.+||..+.=...-|.+++..+..-++.|..+..++..|...+..
T Consensus 5 ~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~ 55 (73)
T PRK02119 5 QNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKD 55 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444444444444444555555555555555555555444443
No 210
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=88.79 E-value=45 Score=37.38 Aligned_cols=12 Identities=17% Similarity=0.047 Sum_probs=4.3
Q ss_pred hhhcHHHHHHHH
Q 020809 67 ELKGKDEVVAQK 78 (321)
Q Consensus 67 eLk~kd~~I~q~ 78 (321)
++..+.+.|.+.
T Consensus 416 k~e~Leeri~ql 427 (1195)
T KOG4643|consen 416 KHEILEERINQL 427 (1195)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 211
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=88.76 E-value=9 Score=33.45 Aligned_cols=48 Identities=21% Similarity=0.278 Sum_probs=25.9
Q ss_pred HHHHHHHHHHhHHHHHHhhhcHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q 020809 50 LKSKIRSLESHIDEKTQELKGKDEVVAQKEK---AIQDKSERIVSLQKELS 97 (321)
Q Consensus 50 lk~ki~~Les~i~e~~~eLk~kd~~I~q~ek---~i~e~~~~I~~Lq~eI~ 97 (321)
.+.+...++.+.+.+..+|...+..|..+.+ .+.+++.+|..|+....
T Consensus 18 ~K~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~ 68 (155)
T PF06810_consen 18 PKAKVDKVKEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNK 68 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 4444445555555555555555555555554 55555555555555554
No 212
>PRK04406 hypothetical protein; Provisional
Probab=88.76 E-value=3.6 Score=31.68 Aligned_cols=51 Identities=16% Similarity=0.335 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 49 QLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSL 99 (321)
Q Consensus 49 qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~ 99 (321)
.+..+|.+||..+.=...-|.+++..+.+-++.|..+..++..|...+.+.
T Consensus 8 ~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~ 58 (75)
T PRK04406 8 QLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNM 58 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344444445444444444444445555555555555555555555444443
No 213
>PF10368 YkyA: Putative cell-wall binding lipoprotein; InterPro: IPR019454 The YkyA family of proteins contain a lipoprotein signal and a hydrolase domain. They are similar to cell wall binding proteins and might also be recognisable by a host immune defence system. It is thus likely that they function in pathways important for pathogenicity []. ; PDB: 2AP3_A.
Probab=88.74 E-value=13 Score=33.86 Aligned_cols=70 Identities=17% Similarity=0.231 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 109 EQVDKAHARADELEKQIDNLKKESEKQQKEKEAL---EARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTE 178 (321)
Q Consensus 109 eq~~~~~~RireL~k~Ie~Lk~ele~~~~kk~~L---Ea~a~e~ekk~~el~~~le~Lek~~~Eqk~~l~elE 178 (321)
+-...++.|-.........+.+-+...+.==..| +.....+..++..+|.....+.+..........+-.
T Consensus 119 ~l~~~~~~ry~~~~~l~~~Y~~~l~~ekely~~L~~~d~~~~~l~~ki~~iN~~y~~~~~~~~~fn~~t~~yN 191 (204)
T PF10368_consen 119 ELNEAMKKRYKSYDKLYKAYKKALELEKELYEMLKDKDTTQKQLDEKIKAINQSYKEVNKQKEKFNEYTKKYN 191 (204)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTT--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444455555555555555554333111111 122334444555555555555554444444444433
No 214
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=88.74 E-value=8 Score=28.70 Aligned_cols=44 Identities=34% Similarity=0.546 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 92 LQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQ 136 (321)
Q Consensus 92 Lq~eI~~~qk~~~~~~eeq~~~~~~RireL~k~Ie~Lk~ele~~~ 136 (321)
++.++..++. .....+.+...+..|.++|..+|+.|+.+++..+
T Consensus 16 ~~eEL~kvk~-~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 16 IQEELTKVKS-ANLAFESKLQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4445544422 4466677777788888888888888888887765
No 215
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=88.67 E-value=39 Score=36.46 Aligned_cols=45 Identities=22% Similarity=0.218 Sum_probs=28.9
Q ss_pred HHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 57 LESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQK 101 (321)
Q Consensus 57 Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~qk 101 (321)
|-.++-..+..|+.+..++.+.++....+-..|..|+++...++.
T Consensus 465 LSK~ql~qs~iIkKLRAk~ke~etl~~K~ge~i~~L~sE~~~lk~ 509 (961)
T KOG4673|consen 465 LSKKQLAQSAIIKKLRAKIKEAETLEEKKGELITKLQSEENKLKS 509 (961)
T ss_pred hHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHH
Confidence 333344444556677777777777777777777778777766643
No 216
>PRK02119 hypothetical protein; Provisional
Probab=88.64 E-value=4.1 Score=31.20 Aligned_cols=52 Identities=29% Similarity=0.260 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 140 EALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRA 191 (321)
Q Consensus 140 ~~LEa~a~e~ekk~~el~~~le~Lek~~~Eqk~~l~elE~~lq~~Eeei~kl 191 (321)
..+++|..++|.++.-....++.|.+.+.+|+..|+.+.+.+..+-..+..+
T Consensus 5 ~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~ 56 (73)
T PRK02119 5 QNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDM 56 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4578888888888899999999999999999999999998877775555443
No 217
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=88.52 E-value=30 Score=35.08 Aligned_cols=19 Identities=37% Similarity=0.531 Sum_probs=10.1
Q ss_pred chHHHHHHHHHHHHHHHHH
Q 020809 41 SPLKIELDQLKSKIRSLES 59 (321)
Q Consensus 41 ~~l~~el~qlk~ki~~Les 59 (321)
..+-.++++|+.+.-.||.
T Consensus 132 n~Lsrkl~qLr~ek~~lEq 150 (552)
T KOG2129|consen 132 NPLSRKLKQLRHEKLPLEQ 150 (552)
T ss_pred CchhHHHHHHHhhhccHHH
Confidence 3455566677655444433
No 218
>PRK02793 phi X174 lysis protein; Provisional
Probab=88.45 E-value=4.4 Score=30.90 Aligned_cols=51 Identities=22% Similarity=0.308 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 141 ALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRA 191 (321)
Q Consensus 141 ~LEa~a~e~ekk~~el~~~le~Lek~~~Eqk~~l~elE~~lq~~Eeei~kl 191 (321)
.+++|..++|.++.-....++.|.+.+.+|+..|+.+.+.+..+-..+..+
T Consensus 5 ~~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~ 55 (72)
T PRK02793 5 SLEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKAS 55 (72)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 477888888889999999999999999999999999998877776655543
No 219
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=88.29 E-value=34 Score=36.46 Aligned_cols=83 Identities=19% Similarity=0.285 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 020809 45 IELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQ 124 (321)
Q Consensus 45 ~el~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~qk~~~~~~eeq~~~~~~RireL~k~ 124 (321)
-+......||.+||.-|.+-...|...++.+.+.=-.+..++.+--+|..+|.+++- +...+|......+++.|.-+..
T Consensus 132 eqVeaQgEKIrDLE~cie~kr~kLnatEEmLQqellsrtsLETqKlDLmaevSeLKL-kltalEkeq~e~E~K~R~se~l 210 (861)
T KOG1899|consen 132 EQVEAQGEKIRDLETCIEEKRNKLNATEEMLQQELLSRTSLETQKLDLMAEVSELKL-KLTALEKEQNETEKKLRLSENL 210 (861)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhhhchHHHHHHHHHHhhhhHHHHHhHHHHHHHHhHH-HHHHHHHHhhhHHHHHHhHHHH
Confidence 344555666666777776666666666666655544455556666666666666633 3344554444555555554444
Q ss_pred HHHH
Q 020809 125 IDNL 128 (321)
Q Consensus 125 Ie~L 128 (321)
++.+
T Consensus 211 ~qev 214 (861)
T KOG1899|consen 211 MQEV 214 (861)
T ss_pred HHHH
Confidence 4443
No 220
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=88.25 E-value=29 Score=34.50 Aligned_cols=18 Identities=22% Similarity=0.348 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHhH
Q 020809 44 KIELDQLKSKIRSLESHI 61 (321)
Q Consensus 44 ~~el~qlk~ki~~Les~i 61 (321)
-..+-++..+|..||+.+
T Consensus 208 la~~a~LE~RL~~LE~~l 225 (388)
T PF04912_consen 208 LARAADLEKRLARLESAL 225 (388)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 345566666666666544
No 221
>PRK00295 hypothetical protein; Provisional
Probab=88.17 E-value=4.9 Score=30.30 Aligned_cols=50 Identities=18% Similarity=0.191 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 142 LEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRA 191 (321)
Q Consensus 142 LEa~a~e~ekk~~el~~~le~Lek~~~Eqk~~l~elE~~lq~~Eeei~kl 191 (321)
++++..++|.++.-....++.|.+.+.+|+..|+.+.+.+..+-..+..+
T Consensus 3 ~e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~ 52 (68)
T PRK00295 3 LEERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEM 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56777788888888888899999999999999999998877776655554
No 222
>PRK00736 hypothetical protein; Provisional
Probab=88.09 E-value=4.2 Score=30.68 Aligned_cols=50 Identities=20% Similarity=0.299 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 142 LEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRA 191 (321)
Q Consensus 142 LEa~a~e~ekk~~el~~~le~Lek~~~Eqk~~l~elE~~lq~~Eeei~kl 191 (321)
++.+..++|.++......++.|.+.+.+|+..|+.+.+.+..+-+.+...
T Consensus 3 ~e~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~ 52 (68)
T PRK00736 3 AEERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSL 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56677788888888888999999999999999999998877776665443
No 223
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=87.96 E-value=11 Score=32.04 Aligned_cols=56 Identities=13% Similarity=0.309 Sum_probs=37.5
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 42 PLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQ 100 (321)
Q Consensus 42 ~l~~el~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~q 100 (321)
++-++|+++-.. |.+....++++|+.+|.+|++.....+.+.+++..+...++...
T Consensus 47 ~v~kql~~vs~~---l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~ 102 (126)
T PF07889_consen 47 SVSKQLEQVSES---LSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIG 102 (126)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 445566555544 44555566677888888888887777777777777777666663
No 224
>PRK04325 hypothetical protein; Provisional
Probab=87.95 E-value=5.2 Score=30.69 Aligned_cols=51 Identities=18% Similarity=0.221 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 141 ALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRA 191 (321)
Q Consensus 141 ~LEa~a~e~ekk~~el~~~le~Lek~~~Eqk~~l~elE~~lq~~Eeei~kl 191 (321)
.++.+..++|.++.-....++.|.+.+.+|+..|+.+.+.+..+-..+..+
T Consensus 6 ~~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~ 56 (74)
T PRK04325 6 EMEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDA 56 (74)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467777788888888888899999999999999999998877775555443
No 225
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=87.71 E-value=3 Score=31.39 Aligned_cols=48 Identities=23% Similarity=0.414 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 45 IELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSL 99 (321)
Q Consensus 45 ~el~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~ 99 (321)
..|.+|+.++.-.+..++++ +..+..-+..|..+..++..|...|.+.
T Consensus 4 ~Ri~~LE~~la~qe~~ie~L-------n~~v~~Qq~~I~~L~~~l~~L~~rl~~~ 51 (69)
T PF04102_consen 4 ERIEELEIKLAFQEDTIEEL-------NDVVTEQQRQIDRLQRQLRLLRERLREL 51 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444444444444 4444444444444444444444444443
No 226
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=87.60 E-value=36 Score=34.83 Aligned_cols=63 Identities=14% Similarity=0.308 Sum_probs=30.1
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 73 EVVAQKEK-AIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQ 136 (321)
Q Consensus 73 ~~I~q~ek-~i~e~~~~I~~Lq~eI~~~qk~~~~~~eeq~~~~~~RireL~k~Ie~Lk~ele~~~ 136 (321)
..+.+.++ +++........+-.+.++++. .+.+++........|+..|+..+.++.+++...+
T Consensus 339 ~~~~e~~qsqlen~k~~~e~~~~e~~~l~~-~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~ 402 (493)
T KOG0804|consen 339 QIMSEYEQSQLENQKQYYELLITEADSLKQ-ESSDLEAEKKIVERKLQQLQTKLKKCQKELKEER 402 (493)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhhhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333 444444444444444444433 3444555555555555555555555555554444
No 227
>PRK04325 hypothetical protein; Provisional
Probab=87.50 E-value=4.1 Score=31.26 Aligned_cols=48 Identities=15% Similarity=0.281 Sum_probs=23.4
Q ss_pred HHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 52 SKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSL 99 (321)
Q Consensus 52 ~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~ 99 (321)
.+|.+||..+.=...-|..++..|.+-++.|..+..++..|..++.+.
T Consensus 9 ~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~ 56 (74)
T PRK04325 9 DRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDA 56 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444434444445555555555555555555555555444
No 228
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=87.42 E-value=38 Score=34.95 Aligned_cols=15 Identities=27% Similarity=0.454 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHH
Q 020809 85 KSERIVSLQKELSSL 99 (321)
Q Consensus 85 ~~~~I~~Lq~eI~~~ 99 (321)
++..|..|...-..+
T Consensus 293 ~s~~i~~l~ek~r~l 307 (622)
T COG5185 293 ISQKIKTLREKWRAL 307 (622)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444433333
No 229
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=87.26 E-value=19 Score=37.37 Aligned_cols=21 Identities=14% Similarity=0.291 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 020809 142 LEARAIEAEKKISDLSAKLEK 162 (321)
Q Consensus 142 LEa~a~e~ekk~~el~~~le~ 162 (321)
.|...+.+-..+..+|.++..
T Consensus 485 YE~QLs~MSEHLasmNeqL~~ 505 (518)
T PF10212_consen 485 YEEQLSMMSEHLASMNEQLAK 505 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 230
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.25 E-value=42 Score=35.22 Aligned_cols=77 Identities=26% Similarity=0.335 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 020809 43 LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADE 120 (321)
Q Consensus 43 l~~el~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~qk~~~~~~eeq~~~~~~Rire 120 (321)
.+.+...|..+|+.++....+....+..+.+...++-.-+..+.+.+.+++--|++- ++.-.+.+.+.-+++.+..+
T Consensus 336 ~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEqk-kEec~kme~qLkkAh~~~dd 412 (654)
T KOG4809|consen 336 FRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQK-KEECSKMEAQLKKAHNIEDD 412 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHH-HHHHHHHHHHHHHHHHhhHh
Confidence 333344444444444443333333333333333333333333333333333322222 22233344444444444443
No 231
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=87.18 E-value=30 Score=34.94 Aligned_cols=61 Identities=18% Similarity=0.265 Sum_probs=31.9
Q ss_pred CCchHHHHHHHHHHHHHHHHHhHHHHHHhhhcHH---HHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 020809 39 DSSPLKIELDQLKSKIRSLESHIDEKTQELKGKD---EVVAQKEK-AIQDKSERIVSLQKELSSL 99 (321)
Q Consensus 39 ~~~~l~~el~qlk~ki~~Les~i~e~~~eLk~kd---~~I~q~ek-~i~e~~~~I~~Lq~eI~~~ 99 (321)
...+++.++...+.+....+.......+.+.... ........ .|+.+..++..+...|...
T Consensus 240 ~~~~ln~ql~~~~~~~~~~~a~l~~~~~~~~~~~~~~~~~~~~~s~~i~~Lr~~~~~~~~~~~~l 304 (458)
T COG3206 240 QLSALNTQLQSARARLAQAEARLASLLQLLPLGREAAALREVLESPTIQDLRQQYAQVRQQIADL 304 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHhccHHHHHHHHHHHHHHHHHHHH
Confidence 4445566666666666666665555555554444 22222222 2555555555555555555
No 232
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=87.12 E-value=36 Score=34.32 Aligned_cols=41 Identities=22% Similarity=0.245 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 124 QIDNLKKESEKQQKEK-EALEARAIEAEKKISDLSAKLEKLQ 164 (321)
Q Consensus 124 ~Ie~Lk~ele~~~~kk-~~LEa~a~e~ekk~~el~~~le~Le 164 (321)
+|..|+.++..+..+. -....|++++.+-++..+..+..|+
T Consensus 277 Ei~~LKqeLa~~EEK~~Yqs~eRaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 277 EIYNLKQELASMEEKMAYQSYERARDIWEVMESCQTRISKLE 318 (395)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3666666666666544 3445666666666666666666666
No 233
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=87.02 E-value=11 Score=28.49 Aligned_cols=23 Identities=26% Similarity=0.419 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 020809 111 VDKAHARADELEKQIDNLKKESE 133 (321)
Q Consensus 111 ~~~~~~RireL~k~Ie~Lk~ele 133 (321)
.+.+-.++.+|+.+++.|+++++
T Consensus 42 l~~a~~e~~~Lk~E~e~L~~el~ 64 (69)
T PF14197_consen 42 LGDAYEENNKLKEENEALRKELE 64 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444433
No 234
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=87.00 E-value=21 Score=31.48 Aligned_cols=33 Identities=12% Similarity=0.328 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHhhhcHHHHHH
Q 020809 44 KIELDQLKSKIRSLESHIDEKTQELKGKDEVVA 76 (321)
Q Consensus 44 ~~el~qlk~ki~~Les~i~e~~~eLk~kd~~I~ 76 (321)
+++.+.++..+.++...+..+-.+.+.+...-.
T Consensus 26 R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er 58 (159)
T PF05384_consen 26 RQEYERLRKELEEVKEEVSEVIEEVDKLEKRER 58 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444333333333333
No 235
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=86.65 E-value=24 Score=31.87 Aligned_cols=106 Identities=21% Similarity=0.369 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH--H
Q 020809 44 KIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADE--L 121 (321)
Q Consensus 44 ~~el~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~qk~~~~~~eeq~~~~~~Rire--L 121 (321)
+.++..+..++..-+..++.....|......|...+..|......+.....+++.+.......++.-.+-...-++. |
T Consensus 77 ~~el~~~E~rl~~rE~~L~~~~~~L~~~e~~l~~~~~~l~~~~~~l~~~~~e~~~~~~~~~~~Le~iAglT~eEAk~~Ll 156 (201)
T PF12072_consen 77 RKELQRLEKRLQQREEQLDRRLEQLEKREEELEKKEEELEQRKEELEEREEELEELIEEQQQELEEIAGLTAEEAKEILL 156 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHH-----HHHHHHHHHH
Q 020809 122 EKQIDNLKKESEKQQKEK-----EALEARAIEA 149 (321)
Q Consensus 122 ~k~Ie~Lk~ele~~~~kk-----~~LEa~a~e~ 149 (321)
+..-+.++.+....-.+. ...+.+++.+
T Consensus 157 ~~le~e~~~e~a~~ir~~eeeak~~A~~~Ar~I 189 (201)
T PF12072_consen 157 EKLEEEARREAAALIRRIEEEAKEEADKKARRI 189 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 236
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=86.43 E-value=31 Score=32.90 Aligned_cols=66 Identities=18% Similarity=0.246 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 125 IDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMR 190 (321)
Q Consensus 125 Ie~Lk~ele~~~~kk~~LEa~a~e~ekk~~el~~~le~Lek~~~Eqk~~l~elE~~lq~~Eeei~k 190 (321)
|..|..++.-++...++|.+...++.+-+.++..-++-++..+-=...+|.+.++.++.++.....
T Consensus 238 ia~Le~eLAmQKs~seElkssq~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~Iq~l~k~~~q 303 (330)
T KOG2991|consen 238 IAELEIELAMQKSQSEELKSSQEELYDFMEELDEDVEGMQSTILILQQKLKETRKEIQRLKKGLEQ 303 (330)
T ss_pred HHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778888888888777888888888888777777777777776666666666666555555444433
No 237
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=86.40 E-value=27 Score=32.12 Aligned_cols=34 Identities=12% Similarity=0.192 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 020809 167 NDEQKSKIRKTERALKVAEEEMMRAKFEATSRSK 200 (321)
Q Consensus 167 ~~Eqk~~l~elE~~lq~~Eeei~kl~~ea~~~a~ 200 (321)
.......+..+...+...+..+..++.....+.+
T Consensus 156 ~~~~~~e~~aLqa~lkk~e~~~~SLe~~LeQK~k 189 (207)
T PF05010_consen 156 RSKHQAELLALQASLKKEEMKVQSLEESLEQKTK 189 (207)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444555555555555555444444433
No 238
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=86.35 E-value=28 Score=32.41 Aligned_cols=36 Identities=22% Similarity=0.176 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 020809 163 LQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSR 198 (321)
Q Consensus 163 Lek~~~Eqk~~l~elE~~lq~~Eeei~kl~~ea~~~ 198 (321)
|+.+..+.+..............+++..+..+.+.+
T Consensus 65 lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~ 100 (230)
T PF10146_consen 65 LENIIKQAESERNKRQEKIQRLYEEYKPLKDEINEL 100 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333334444444444444433
No 239
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=86.17 E-value=30 Score=32.44 Aligned_cols=14 Identities=21% Similarity=0.359 Sum_probs=6.7
Q ss_pred hhhhHHHHHhccch
Q 020809 270 VKEQWVVFTTNVEP 283 (321)
Q Consensus 270 ~~~~~~~~~~~~~p 283 (321)
+..++..++.-+++
T Consensus 187 lq~QL~~L~~EL~~ 200 (246)
T PF00769_consen 187 LQEQLKELKSELEQ 200 (246)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH
Confidence 44455555544443
No 240
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=86.01 E-value=36 Score=33.21 Aligned_cols=17 Identities=29% Similarity=0.407 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHhHHHH
Q 020809 48 DQLKSKIRSLESHIDEK 64 (321)
Q Consensus 48 ~qlk~ki~~Les~i~e~ 64 (321)
+++...+..|+++-..+
T Consensus 23 ~~l~~~~~sL~qen~~L 39 (310)
T PF09755_consen 23 EQLRKRIESLQQENRVL 39 (310)
T ss_pred HHHHHHHHHHHHHhHHH
Confidence 44444444444443333
No 241
>PRK00846 hypothetical protein; Provisional
Probab=85.96 E-value=7.4 Score=30.24 Aligned_cols=52 Identities=21% Similarity=0.276 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 140 EALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRA 191 (321)
Q Consensus 140 ~~LEa~a~e~ekk~~el~~~le~Lek~~~Eqk~~l~elE~~lq~~Eeei~kl 191 (321)
..+++|..++|.++.-....++.|.+.+..|+..|+.+.+.+..+-+.+..+
T Consensus 9 ~~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~ 60 (77)
T PRK00846 9 QALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKV 60 (77)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5678888888888888888999999999999999999998877776666554
No 242
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.86 E-value=3.9 Score=38.89 Aligned_cols=18 Identities=39% Similarity=0.671 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHhHHHH
Q 020809 47 LDQLKSKIRSLESHIDEK 64 (321)
Q Consensus 47 l~qlk~ki~~Les~i~e~ 64 (321)
+.+++++|..|+..++++
T Consensus 58 ~~~l~~Ql~~l~g~i~~L 75 (262)
T COG1729 58 LTQLEQQLRQLQGKIEEL 75 (262)
T ss_pred cHHHHHHHHHHHhhHHHH
Confidence 444444444444444443
No 243
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=85.82 E-value=28 Score=31.92 Aligned_cols=32 Identities=22% Similarity=0.352 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 106 NAAEQVDKAHARADELEKQIDNLKKESEKQQK 137 (321)
Q Consensus 106 ~~eeq~~~~~~RireL~k~Ie~Lk~ele~~~~ 137 (321)
.++.....+..|..-++..|+.++..=+..+.
T Consensus 87 s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk 118 (207)
T PF05010_consen 87 SLEKSFSDLHKRYEKQKEVIEGYKKNEETLKK 118 (207)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 34444444444555455555555444444443
No 244
>PF14282 FlxA: FlxA-like protein
Probab=85.61 E-value=3.6 Score=33.60 Aligned_cols=20 Identities=25% Similarity=0.424 Sum_probs=7.9
Q ss_pred HHHHHHHHhHHHHHHhhhcH
Q 020809 52 SKIRSLESHIDEKTQELKGK 71 (321)
Q Consensus 52 ~ki~~Les~i~e~~~eLk~k 71 (321)
..|..|+.+|..+.++|..+
T Consensus 19 ~~I~~L~~Qi~~Lq~ql~~l 38 (106)
T PF14282_consen 19 SQIEQLQKQIKQLQEQLQEL 38 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444443333333
No 245
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=85.60 E-value=28 Score=31.63 Aligned_cols=38 Identities=29% Similarity=0.371 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 121 LEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSA 158 (321)
Q Consensus 121 L~k~Ie~Lk~ele~~~~kk~~LEa~a~e~ekk~~el~~ 158 (321)
++..+..+..++...+-+-+.|+.+-..++....++..
T Consensus 91 ~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~ 128 (201)
T PF13851_consen 91 LKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYR 128 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444333
No 246
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=85.34 E-value=44 Score=36.07 Aligned_cols=37 Identities=8% Similarity=0.064 Sum_probs=17.8
Q ss_pred HHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHH
Q 020809 50 LKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKS 86 (321)
Q Consensus 50 lk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~ 86 (321)
++.+.....+.++=+.+++..+..+++..|..+++..
T Consensus 258 l~~k~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr 294 (726)
T PRK09841 258 IARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYR 294 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444455555555555555555555444443
No 247
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=85.26 E-value=76 Score=36.61 Aligned_cols=50 Identities=20% Similarity=0.315 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 48 DQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELS 97 (321)
Q Consensus 48 ~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~ 97 (321)
..++..|.+.+..++....+..+.+..+...++.|.++...+..++..+.
T Consensus 219 e~~~l~i~~~~~ki~~~ke~v~e~e~e~~~~~~~i~ei~~~~~el~k~~~ 268 (1294)
T KOG0962|consen 219 EVLRLNIHSGQRKIEKSKEEVSELENELGPIEAKIEEIEKSLKELEKLLK 268 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555556655555555566665555555555554444444433
No 248
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=85.24 E-value=59 Score=35.04 Aligned_cols=58 Identities=22% Similarity=0.336 Sum_probs=28.6
Q ss_pred HHHHH-HHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 44 KIELD-QLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQK 101 (321)
Q Consensus 44 ~~el~-qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~qk 101 (321)
++++. .++.....++.--++...++..++.++.-++..+.+++..|..|...+..++.
T Consensus 210 r~EM~fKlKE~~~k~~~leeey~~E~n~kEkqvs~L~~q~~eKen~~kdl~~~l~es~~ 268 (786)
T PF05483_consen 210 RQEMHFKLKEDYEKFEDLEEEYKKEVNDKEKQVSLLQTQLKEKENKIKDLLLLLQESQD 268 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHH
Confidence 34443 34443444444444444555555555555555555555555555555554443
No 249
>PRK11519 tyrosine kinase; Provisional
Probab=85.21 E-value=59 Score=35.04 Aligned_cols=45 Identities=16% Similarity=0.299 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 142 LEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMR 190 (321)
Q Consensus 142 LEa~a~e~ekk~~el~~~le~Lek~~~Eqk~~l~elE~~lq~~Eeei~k 190 (321)
+..+.+.++.+++.++..+..+-. .+..+..++++.+..+..+..
T Consensus 344 l~~~~~~L~~~~~~l~~~~~~lp~----~e~~~~~L~Re~~~~~~lY~~ 388 (719)
T PRK11519 344 LLEKRKALEDEKAKLNGRVTAMPK----TQQEIVRLTRDVESGQQVYMQ 388 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccH----HHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444333 233444444444444444433
No 250
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=85.19 E-value=20 Score=29.65 Aligned_cols=42 Identities=31% Similarity=0.423 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 105 LNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARA 146 (321)
Q Consensus 105 ~~~eeq~~~~~~RireL~k~Ie~Lk~ele~~~~kk~~LEa~a 146 (321)
...++-...++.|+..|++.++.+.+++...+.....++...
T Consensus 83 ~~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~~~~~~~~l 124 (129)
T cd00584 83 KDLEEAIEFLDKKIEELTKQIEKLQKELAKLKDQINTLEAEL 124 (129)
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555667777777777777777777777776665555443
No 251
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=85.06 E-value=52 Score=34.26 Aligned_cols=14 Identities=36% Similarity=0.703 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHh
Q 020809 47 LDQLKSKIRSLESH 60 (321)
Q Consensus 47 l~qlk~ki~~Les~ 60 (321)
++.|+.++..++++
T Consensus 161 ~EaL~ekLk~~~ee 174 (596)
T KOG4360|consen 161 LEALQEKLKPLEEE 174 (596)
T ss_pred HHHHHhhcCChHHH
Confidence 44445554444443
No 252
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=85.05 E-value=38 Score=32.71 Aligned_cols=30 Identities=13% Similarity=0.345 Sum_probs=18.6
Q ss_pred CCchHHHHHHHHHHHHHHHHHhHHHHHHhh
Q 020809 39 DSSPLKIELDQLKSKIRSLESHIDEKTQEL 68 (321)
Q Consensus 39 ~~~~l~~el~qlk~ki~~Les~i~e~~~eL 68 (321)
+...++.++++++.++...+..++.....+
T Consensus 80 d~~~~~~~l~~a~a~l~~a~a~l~~~~~~~ 109 (346)
T PRK10476 80 DPRPYELTVAQAQADLALADAQIMTTQRSV 109 (346)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566677777777777666666554333
No 253
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=85.00 E-value=41 Score=32.98 Aligned_cols=31 Identities=16% Similarity=0.208 Sum_probs=14.5
Q ss_pred HHHHhHhHHHHHhh--hhhcCchhHHHHhhhcc
Q 020809 286 QTLKTKTIEACEAT--KTAVTPHIIRVQEVVDP 316 (321)
Q Consensus 286 q~~~~~~~~~~~~~--~~~~~ph~~k~~~~~~p 316 (321)
..++..+.-..+.+ +..+--|--+.+.+++-
T Consensus 275 sdLksl~~aLle~indK~~al~Hqr~tNkILg~ 307 (319)
T PF09789_consen 275 SDLKSLATALLETINDKNLALQHQRKTNKILGN 307 (319)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 33344444333333 23344566666666543
No 254
>PF11570 E2R135: Coiled-coil receptor-binding R-domain of colicin E2; InterPro: IPR024566 Bacteriocins are protein antibiotics that kill bacteria closely related to the producing species. Colicins are a subgroup of bacteriocins that are produced by and target Escherichia coli. The lethal action of most colicins is exerted either by formation of a pore in the cytoplasmic membrane of the target cell, or by an enzymatic nuclease digestion mechanism. Most colicins are able to translocate the outer membrane by a two-receptor system, where one receptor is used for the initial binding and the second for translocation. The initial binding is to cell surface receptors such as the porins OmpF, FepA, BtuB, Cir and FhuA. The presence of specific periplasmic proteins, such as TolA, TolB, TolC, or TonB, are required for translocation across the membrane []. Colicins are composed of domains with distinct functional roles. In general they contain a central R (receptor) domain that mediates receptor binding, an N-terminal T (translocation) domain that mediates translocation of the protein from the outer membrane receptor to the colicin's target within the cell, and a C-terminal C (catalytic) domain that performs the catalytic cleavage []. This entry represents the central R domain found in colicin-E2 and other colicins.; PDB: 2YSU_B 1UJW_B 2B5U_C 1JCH_A.
Probab=84.87 E-value=24 Score=30.17 Aligned_cols=45 Identities=24% Similarity=0.392 Sum_probs=29.9
Q ss_pred CchHHHHHHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHH
Q 020809 40 SSPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQD 84 (321)
Q Consensus 40 ~~~l~~el~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e 84 (321)
.+..+++|++....|+.+.+.+.....-+.+....++++.+.+.+
T Consensus 10 y~~a~aeL~~a~~~I~~~q~r~a~a~~~~~~r~seldqA~~~~~e 54 (136)
T PF11570_consen 10 YEAARAELDQADEDIATLQERQASAEQALNGRRSELDQANKKVKE 54 (136)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 344566777777777777777777666666666666666665555
No 255
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=84.85 E-value=20 Score=29.22 Aligned_cols=28 Identities=14% Similarity=0.391 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHhHHHHHHhhhcHHHHH
Q 020809 48 DQLKSKIRSLESHIDEKTQELKGKDEVV 75 (321)
Q Consensus 48 ~qlk~ki~~Les~i~e~~~eLk~kd~~I 75 (321)
++++.++..+.+++..+..++.+...-+
T Consensus 13 q~~q~~~~~l~~q~~~le~~~~E~~~v~ 40 (110)
T TIGR02338 13 QQLQQQLQAVATQKQQVEAQLKEAEKAL 40 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333
No 256
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=84.75 E-value=29 Score=31.16 Aligned_cols=18 Identities=11% Similarity=0.281 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 020809 78 KEKAIQDKSERIVSLQKE 95 (321)
Q Consensus 78 ~ek~i~e~~~~I~~Lq~e 95 (321)
++.++.++..++..+...
T Consensus 132 L~~e~~~L~~~~~~l~~~ 149 (189)
T PF10211_consen 132 LEEEKEELEKQVQELKNK 149 (189)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 257
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=84.74 E-value=15 Score=37.80 Aligned_cols=31 Identities=19% Similarity=0.276 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 71 KDEVVAQKEKAIQDKSERIVSLQKELSSLQK 101 (321)
Q Consensus 71 kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~qk 101 (321)
.+..+.+++.+|..++.++..++.+++.++.
T Consensus 69 ~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~ 99 (525)
T TIGR02231 69 DPERLAELRKQIRELEAELRDLEDRGDALKA 99 (525)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666777776666666666666666555533
No 258
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=84.69 E-value=48 Score=33.53 Aligned_cols=143 Identities=17% Similarity=0.293 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHH---HHHHHHHHH-HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 020809 44 KIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKE---KAIQDKSER-IVSLQKELSSLQKKETLNAAEQVDKAHARAD 119 (321)
Q Consensus 44 ~~el~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~e---k~i~e~~~~-I~~Lq~eI~~~qk~~~~~~eeq~~~~~~Rir 119 (321)
.+++..++.++.............+......+..-. .......+. |..|..+...+.. ...++........-++.
T Consensus 238 ~~~~~~ln~ql~~~~~~~~~~~a~l~~~~~~~~~~~~~~~~~~~~~s~~i~~Lr~~~~~~~~-~~~~l~~~~~~~~p~~~ 316 (458)
T COG3206 238 EQQLSALNTQLQSARARLAQAEARLASLLQLLPLGREAAALREVLESPTIQDLRQQYAQVRQ-QIADLSTELGAKHPQLV 316 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHhccHHHHHHHHHHHHHHH-HHHHHHHhhcccChHHH
Confidence 555666666666666666666666555555555443 222333333 5666666555533 22334443434444444
Q ss_pred HHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 120 ELEKQIDNLKKESEKQQKEK--------EALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRA 191 (321)
Q Consensus 120 eL~k~Ie~Lk~ele~~~~kk--------~~LEa~a~e~ekk~~el~~~le~Lek~~~Eqk~~l~elE~~lq~~Eeei~kl 191 (321)
.++.++..+...+...-... ..++.+.+.+++.+..++..+..+-.. ...+.+++++.+.....+..+
T Consensus 317 ~~~~q~~~~~~~~~~e~~~~~~~~~~~~~~l~~~~~~L~~~~~~l~~~~~~~~~~----~~~l~~L~Re~~~~r~~ye~l 392 (458)
T COG3206 317 ALEAQLAELRQQIAAELRQILASLPNELALLEQQEAALEKELAQLKGRLSKLPKL----QVQLRELEREAEAARSLYETL 392 (458)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHhhchHh----hhHHHHHHHHHHHHHHHHHHH
Confidence 46666555555554333222 334444444444444444444444443 344444454444444444444
No 259
>PRK00846 hypothetical protein; Provisional
Probab=84.62 E-value=7.4 Score=30.25 Aligned_cols=50 Identities=22% Similarity=0.301 Sum_probs=26.2
Q ss_pred HHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 50 LKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSL 99 (321)
Q Consensus 50 lk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~ 99 (321)
+..+|.+||..+.=...-|.+++..+...+..|..+..++..|...+.+.
T Consensus 11 le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~ 60 (77)
T PRK00846 11 LEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKV 60 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44445555555544444444445555555555555555555555555444
No 260
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=84.54 E-value=55 Score=34.09 Aligned_cols=92 Identities=18% Similarity=0.208 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 020809 113 KAHARADELEKQ-IDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRK-TERALKVAEEEMMR 190 (321)
Q Consensus 113 ~~~~RireL~k~-Ie~Lk~ele~~~~kk~~LEa~a~e~ekk~~el~~~le~Lek~~~Eqk~~l~e-lE~~lq~~Eeei~k 190 (321)
.++.|+.++..+ ....++.++.+..=..+++....++..++..+-..++.+.....-.+.+++. +-...+.-+.++..
T Consensus 380 tL~~rL~e~~~e~~~~~r~~lekl~~~q~e~~~~l~~v~eKVd~LpqqI~~vs~Kc~~~Ksd~d~kIdtE~k~R~~eV~~ 459 (531)
T PF15450_consen 380 TLNLRLSEAKNEWESDERKSLEKLDQWQNEMEKHLKEVQEKVDSLPQQIEEVSDKCDLHKSDSDTKIDTEGKAREREVGA 459 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHH
Confidence 444455555444 3333344444443335555555555555555555555555544444444433 22233444445555
Q ss_pred HHHHHhhhhhhhhh
Q 020809 191 AKFEATSRSKELTE 204 (321)
Q Consensus 191 l~~ea~~~a~ql~e 204 (321)
+..+.+++...+-.
T Consensus 460 vRqELa~lLssvQ~ 473 (531)
T PF15450_consen 460 VRQELATLLSSVQL 473 (531)
T ss_pred HHHHHHHHHHHHHH
Confidence 55555555544433
No 261
>PRK02793 phi X174 lysis protein; Provisional
Probab=84.26 E-value=8.1 Score=29.46 Aligned_cols=48 Identities=21% Similarity=0.313 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 44 KIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSS 98 (321)
Q Consensus 44 ~~el~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~ 98 (321)
+..|.+|+.++.-.+..|+++ +..+.+-++.|..+..++..|..++.+
T Consensus 7 e~Ri~~LE~~lafQe~tIe~L-------n~~v~~Qq~~I~~L~~~l~~L~~rl~~ 54 (72)
T PRK02793 7 EARLAELESRLAFQEITIEEL-------NVTVTAHEMEMAKLRDHLRLLTEKLKA 54 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444444444444 444444444444444444444444443
No 262
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=84.26 E-value=0.31 Score=52.23 Aligned_cols=39 Identities=18% Similarity=0.245 Sum_probs=0.0
Q ss_pred CCchHHHHHHHHHHHHHHHHHhHHHHHHhhhcHHHHHHH
Q 020809 39 DSSPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQ 77 (321)
Q Consensus 39 ~~~~l~~el~qlk~ki~~Les~i~e~~~eLk~kd~~I~q 77 (321)
+.+.+.+...++..++..|....+.+..+...+...+++
T Consensus 187 e~d~l~q~~~el~~~i~~L~~e~~~L~~e~~~l~~~~~~ 225 (713)
T PF05622_consen 187 ERDELAQRCHELEKQISDLQEEKESLQSENEELQERLSQ 225 (713)
T ss_dssp ---------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhhcccCC
Confidence 344455555555555555555544444444444333333
No 263
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=84.18 E-value=31 Score=34.80 Aligned_cols=47 Identities=13% Similarity=0.106 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 020809 125 IDNLKKESEKQQKEKEALEARAIEA-EKKISDLSAKLEKLQKINDEQK 171 (321)
Q Consensus 125 Ie~Lk~ele~~~~kk~~LEa~a~e~-ekk~~el~~~le~Lek~~~Eqk 171 (321)
++.-++++...+.+++..|.+..-. ..+..++...++..+..+...+
T Consensus 271 ~elHq~Ei~~LKqeLa~~EEK~~Yqs~eRaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 271 TELHQNEIYNLKQELASMEEKMAYQSYERARDIWEVMESCQTRISKLE 318 (395)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 4445555666665555555544432 2344455555555554444444
No 264
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=83.92 E-value=9.9 Score=33.22 Aligned_cols=33 Identities=18% Similarity=0.314 Sum_probs=12.8
Q ss_pred HHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHH
Q 020809 54 IRSLESHIDEKTQELKGKDEVVAQKEKAIQDKS 86 (321)
Q Consensus 54 i~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~ 86 (321)
+....+..+....+++.+..+|....+.|..+.
T Consensus 15 i~~~K~~~~~~~~e~~~~k~ql~~~d~~i~~Lk 47 (155)
T PF06810_consen 15 IEAPKAKVDKVKEERDNLKTQLKEADKQIKDLK 47 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444443333333333333333333333
No 265
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=83.91 E-value=56 Score=33.74 Aligned_cols=143 Identities=10% Similarity=0.177 Sum_probs=60.6
Q ss_pred HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Q 020809 66 QELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEK------ 139 (321)
Q Consensus 66 ~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~qk~~~~~~eeq~~~~~~RireL~k~Ie~Lk~ele~~~~kk------ 139 (321)
.++..+...+......+..+......++..++..+. ..+++...+..--..|..+-+.|-.++=+.+.+.
T Consensus 60 ~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~le~~~~----~~~ek~~~l~~~~~~L~~~F~~LA~~ile~k~~~f~~~~~ 135 (475)
T PRK10361 60 AECELLNNEVRSLQSINTSLEADLREVTTRMEAAQQ----HADDKIRQMINSEQRLSEQFENLANRIFEHSNRRVDEQNR 135 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444455554444445555555544444332 1222222222222224444444444443333332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh---hhhccCchhHHH
Q 020809 140 EALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSRSKELT---EVHSAWLPPWLA 215 (321)
Q Consensus 140 ~~LEa~a~e~ekk~~el~~~le~Lek~~~Eqk~~l~elE~~lq~~Eeei~kl~~ea~~~a~ql~---e~~g~~l~Pwla 215 (321)
..|+.-..=+...+.....+++++.+........|.. .+..+.+.-.++..++..+++-|. .+.|.|----|.
T Consensus 136 ~~l~~ll~Pl~e~l~~f~~~v~~~~~~~~~~~~~L~~---qi~~L~~~n~~i~~ea~nLt~ALkgd~K~rG~WGE~qLe 211 (475)
T PRK10361 136 QSLNSLLSPLREQLDGFRRQVQDSFGKEAQERHTLAH---EIRNLQQLNAQMAQEAINLTRALKGDNKTQGNWGEVVLT 211 (475)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHcCCCCcCcchHHHHHH
Confidence 3333334444455555555555555544444333333 333333333444445555554441 233666444443
No 266
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=83.72 E-value=23 Score=29.15 Aligned_cols=41 Identities=27% Similarity=0.400 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 105 LNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEAR 145 (321)
Q Consensus 105 ~~~eeq~~~~~~RireL~k~Ie~Lk~ele~~~~kk~~LEa~ 145 (321)
...++-...++.|+..|++.++.+...+...+.....+...
T Consensus 82 ~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i~~~ 122 (126)
T TIGR00293 82 KDAEEAIEFLKKRIEELEKAIEKLQEALAELASRAQQLEQE 122 (126)
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777788888887777777777777666555443
No 267
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=83.66 E-value=1.4 Score=47.26 Aligned_cols=14 Identities=36% Similarity=0.237 Sum_probs=7.7
Q ss_pred HhHhHHHHHhhhhh
Q 020809 289 KTKTIEACEATKTA 302 (321)
Q Consensus 289 ~~~~~~~~~~~~~~ 302 (321)
+.+|.+|-++|...
T Consensus 630 ~~ks~eFr~av~~l 643 (722)
T PF05557_consen 630 KAKSQEFREAVYSL 643 (722)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45566666555443
No 268
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=83.50 E-value=46 Score=32.44 Aligned_cols=37 Identities=16% Similarity=0.259 Sum_probs=21.8
Q ss_pred chHHHHHHHHHHHHHHHHHhHHHHHHhhhcHHHHHHH
Q 020809 41 SPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQ 77 (321)
Q Consensus 41 ~~l~~el~qlk~ki~~Les~i~e~~~eLk~kd~~I~q 77 (321)
..+...+..++++-..|....+-.....+.+...+..
T Consensus 23 ~~l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~ 59 (310)
T PF09755_consen 23 EQLRKRIESLQQENRVLKRELETEKARCKHLQEENRA 59 (310)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666667777776666666666554444444444443
No 269
>PRK00295 hypothetical protein; Provisional
Probab=83.50 E-value=8.9 Score=28.88 Aligned_cols=48 Identities=15% Similarity=0.277 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 44 KIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSS 98 (321)
Q Consensus 44 ~~el~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~ 98 (321)
+..+.+|+.++.-.+..|+++ +..+.+-++.|..+..++..|...+.+
T Consensus 4 e~Ri~~LE~kla~qE~tie~L-------n~~v~~Qq~~I~~L~~ql~~L~~rl~~ 51 (68)
T PRK00295 4 EERVTELESRQAFQDDTIQAL-------NDVLVEQQRVIERLQLQMAALIKRQEE 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555554 444444444444444444444444433
No 270
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=83.46 E-value=29 Score=30.12 Aligned_cols=12 Identities=42% Similarity=0.487 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHH
Q 020809 125 IDNLKKESEKQQ 136 (321)
Q Consensus 125 Ie~Lk~ele~~~ 136 (321)
|+.|++.++++.
T Consensus 96 ie~l~k~~~~l~ 107 (145)
T COG1730 96 IEFLKKRIEELE 107 (145)
T ss_pred HHHHHHHHHHHH
Confidence 444444333333
No 271
>PHA03332 membrane glycoprotein; Provisional
Probab=83.24 E-value=57 Score=36.84 Aligned_cols=22 Identities=18% Similarity=0.173 Sum_probs=13.2
Q ss_pred HHHHHHHHhHHHhhCcchHHHHHH
Q 020809 219 LQCQSLIETHWNAHGKPAMDVAIQ 242 (321)
Q Consensus 219 ~~~~~~~~~~~~~hg~p~~~~~~~ 242 (321)
..+++..+++- .|=|.=+.+++
T Consensus 1011 TCl~Sl~aG~L--~GCP~~~pfl~ 1032 (1328)
T PHA03332 1011 TCLKSLLAGTL--AGCPTDAPFLR 1032 (1328)
T ss_pred HHHHHhhcccc--cCCCCCChhhh
Confidence 35555555543 67777766664
No 272
>PRK00736 hypothetical protein; Provisional
Probab=82.99 E-value=8.5 Score=28.99 Aligned_cols=48 Identities=19% Similarity=0.340 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 44 KIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSS 98 (321)
Q Consensus 44 ~~el~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~ 98 (321)
+..|.+|+.++.-.+..|+++ +..+.+-++.|..+..++..|..++.+
T Consensus 4 e~Ri~~LE~klafqe~tie~L-------n~~v~~Qq~~i~~L~~ql~~L~~rl~~ 51 (68)
T PRK00736 4 EERLTELEIRVAEQEKTIEEL-------SDQLAEQWKTVEQMRKKLDALTERFLS 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555 444444444444444444444444433
No 273
>PRK10780 periplasmic chaperone; Provisional
Probab=82.79 E-value=31 Score=30.00 Aligned_cols=19 Identities=16% Similarity=0.274 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHhHHHH
Q 020809 46 ELDQLKSKIRSLESHIDEK 64 (321)
Q Consensus 46 el~qlk~ki~~Les~i~e~ 64 (321)
+..+.+.-...|+...+..
T Consensus 37 ~~p~~k~~~~~le~~~~~~ 55 (165)
T PRK10780 37 QVPQRTGVSKQLENEFKGR 55 (165)
T ss_pred HCHHHHHHHHHHHHHHHHH
Confidence 3333333334444444443
No 274
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=82.52 E-value=42 Score=31.27 Aligned_cols=11 Identities=27% Similarity=0.389 Sum_probs=4.1
Q ss_pred HHHHHHHHHHh
Q 020809 50 LKSKIRSLESH 60 (321)
Q Consensus 50 lk~ki~~Les~ 60 (321)
++.+..+++..
T Consensus 6 ir~K~~~lek~ 16 (230)
T PF10146_consen 6 IRNKTLELEKL 16 (230)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 275
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=82.51 E-value=92 Score=35.16 Aligned_cols=68 Identities=15% Similarity=0.222 Sum_probs=27.9
Q ss_pred hhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 68 LKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQ 136 (321)
Q Consensus 68 Lk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~qk~~~~~~eeq~~~~~~RireL~k~Ie~Lk~ele~~~ 136 (321)
.+.....|.+++.+++.+..+|..++........ --..+.++.+.++.++..-..++..++.++.+.+
T Consensus 443 ~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~-~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~ 510 (1041)
T KOG0243|consen 443 KKEMAEQIEELEEELENLEKQLKDLTELYMNQLE-IKELLKEEKEKLKSKLQNKNKELESLKEELQQAK 510 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444443321111 1133444444444444444444444444443333
No 276
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=82.39 E-value=51 Score=36.09 Aligned_cols=40 Identities=10% Similarity=0.120 Sum_probs=15.0
Q ss_pred hHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 60 HIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSL 99 (321)
Q Consensus 60 ~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~ 99 (321)
-++.++++....+....+++....+.+.....++.+.+.+
T Consensus 521 li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l 560 (782)
T PRK00409 521 LIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKL 560 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333333333
No 277
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=82.28 E-value=36 Score=35.77 Aligned_cols=14 Identities=7% Similarity=0.368 Sum_probs=8.6
Q ss_pred hHHHhhCcchHHHH
Q 020809 227 THWNAHGKPAMDVA 240 (321)
Q Consensus 227 ~~~~~hg~p~~~~~ 240 (321)
-.|-..+.|++...
T Consensus 298 ~~~y~~~~p~i~~~ 311 (555)
T TIGR03545 298 LKYYDQAEPLLNKS 311 (555)
T ss_pred HHHHHHHhHhhccc
Confidence 35666666666665
No 278
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=82.17 E-value=35 Score=30.72 Aligned_cols=21 Identities=29% Similarity=0.450 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 020809 79 EKAIQDKSERIVSLQKELSSL 99 (321)
Q Consensus 79 ek~i~e~~~~I~~Lq~eI~~~ 99 (321)
+..|..++.++..|..++..+
T Consensus 126 ~~~i~~L~~e~~~L~~~~~~l 146 (189)
T PF10211_consen 126 EEEIEELEEEKEELEKQVQEL 146 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 279
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=82.11 E-value=52 Score=32.00 Aligned_cols=55 Identities=25% Similarity=0.364 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhhhc-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 45 IELDQLKSKIRSLESHIDEKTQELKG-----KDEVVAQKEKAIQDKSERIVSLQKELSSL 99 (321)
Q Consensus 45 ~el~qlk~ki~~Les~i~e~~~eLk~-----kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~ 99 (321)
++.++.+..--+.-+.++++...+++ +...|+.+...|.+....|..++.+|+++
T Consensus 41 Q~~EQAr~~A~~fA~~ld~~~~kl~~Ms~~ql~~~~~k~~~si~~q~~~i~~l~~~i~~l 100 (301)
T PF06120_consen 41 QNAEQARQEAIEFADSLDELKEKLKEMSSTQLRANIAKAEESIAAQKRAIEDLQKKIDSL 100 (301)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444332 33444444444444444444444444444
No 280
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=82.05 E-value=22 Score=36.71 Aligned_cols=28 Identities=18% Similarity=0.184 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 72 DEVVAQKEKAIQDKSERIVSLQKELSSL 99 (321)
Q Consensus 72 d~~I~q~ek~i~e~~~~I~~Lq~eI~~~ 99 (321)
+.+|.+++.++...+.+++.++..+.-+
T Consensus 77 ~~~l~~l~~~~~~~~~~~~~~~~~~~~l 104 (525)
T TIGR02231 77 RKQIRELEAELRDLEDRGDALKALAKFL 104 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333334444444444333
No 281
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=81.95 E-value=78 Score=33.93 Aligned_cols=68 Identities=18% Similarity=0.258 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 020809 43 LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKA 114 (321)
Q Consensus 43 l~~el~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~qk~~~~~~eeq~~~~ 114 (321)
.++++..++.++..+..+.+....+.+. .+.+.+..+.+.+.++..|+.++..++. ....++..+..+
T Consensus 344 ~~q~~~~~~~~l~~~~~~~~~~~~e~~~---~~~~~~~~~~~~~~~l~~le~~l~~~~~-~~~~L~~~~~~l 411 (656)
T PRK06975 344 LNRKVDRLDQELVQRQQANDAQTAELRV---KTEQAQASVHQLDSQFAQLDGKLADAQS-AQQALEQQYQDL 411 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 4567778888887777777777666633 3455666667777777777777766654 444555555444
No 282
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=81.76 E-value=67 Score=33.08 Aligned_cols=14 Identities=21% Similarity=0.688 Sum_probs=8.1
Q ss_pred hhhcccCCCCCCcc
Q 020809 20 ADVSIQGEDVPPLT 33 (321)
Q Consensus 20 ~~~~~~~~~~~~~~ 33 (321)
-++.++|.+.|..+
T Consensus 262 kev~~e~~e~p~~~ 275 (527)
T PF15066_consen 262 KEVTVEGVESPEIA 275 (527)
T ss_pred hhcchhcccCcccc
Confidence 34556666666653
No 283
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=81.67 E-value=40 Score=30.46 Aligned_cols=37 Identities=19% Similarity=0.298 Sum_probs=18.2
Q ss_pred HHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 63 EKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSL 99 (321)
Q Consensus 63 e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~ 99 (321)
....+.+.++..|.+...+...++..|..|+..|-.+
T Consensus 107 ~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el 143 (190)
T PF05266_consen 107 KLLEERKKLEKKIEEKEAELKELESEIKELEMKILEL 143 (190)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 4444444555555555444444455555555555444
No 284
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=81.66 E-value=54 Score=31.94 Aligned_cols=20 Identities=10% Similarity=0.172 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 020809 172 SKIRKTERALKVAEEEMMRA 191 (321)
Q Consensus 172 ~~l~elE~~lq~~Eeei~kl 191 (321)
..+..++++...++..+..+
T Consensus 278 ~~~~~L~re~~~a~~~y~~~ 297 (362)
T TIGR01010 278 ADYQRLVLQNELAQQQLKAA 297 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444433
No 285
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=81.61 E-value=6.1 Score=41.40 Aligned_cols=13 Identities=15% Similarity=0.197 Sum_probs=8.1
Q ss_pred ccCchhHHHHHHH
Q 020809 207 SAWLPPWLAVHLL 219 (321)
Q Consensus 207 g~~l~Pwla~~~~ 219 (321)
|..+-|||-.-.-
T Consensus 209 G~~~d~~lk~~fq 221 (907)
T KOG2264|consen 209 GQSEDEWLKQVFQ 221 (907)
T ss_pred ccchHHHHHHHHH
Confidence 5667777765443
No 286
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=81.30 E-value=55 Score=31.77 Aligned_cols=97 Identities=16% Similarity=0.236 Sum_probs=66.1
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 95 ELSSLQKKETLNAAEQVDKAHARADELEKQ-------IDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKIN 167 (321)
Q Consensus 95 eI~~~qk~~~~~~eeq~~~~~~RireL~k~-------Ie~Lk~ele~~~~kk~~LEa~a~e~ekk~~el~~~le~Lek~~ 167 (321)
.+..+.. .+..+..+.+.+..+-.+++.- ...++.+++....+...||........+-...+..+-.|-...
T Consensus 203 ~~~~~~~-~E~~Lr~QL~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer 281 (309)
T PF09728_consen 203 QVQTLKE-TEKELREQLNLYSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEER 281 (309)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 4444422 4556666666666666664443 6777788888888888888888888888888888887777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 168 DEQKSKIRKTERALKVAEEEMMRAK 192 (321)
Q Consensus 168 ~Eqk~~l~elE~~lq~~Eeei~kl~ 192 (321)
......+..+......++.-...++
T Consensus 282 ~~~~~~~~~~~~k~~kLe~LcRaLQ 306 (309)
T PF09728_consen 282 QKLEKELEKLKKKIEKLEKLCRALQ 306 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7777777777776666655544443
No 287
>PRK11546 zraP zinc resistance protein; Provisional
Probab=81.30 E-value=20 Score=31.08 Aligned_cols=20 Identities=15% Similarity=0.499 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 020809 117 RADELEKQIDNLKKESEKQQ 136 (321)
Q Consensus 117 RireL~k~Ie~Lk~ele~~~ 136 (321)
+|+.|.++|..|+..+.+++
T Consensus 90 kI~aL~kEI~~Lr~kL~e~r 109 (143)
T PRK11546 90 KINAVAKEMENLRQSLDELR 109 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443
No 288
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=81.25 E-value=66 Score=32.65 Aligned_cols=50 Identities=16% Similarity=0.124 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 45 IELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQK 94 (321)
Q Consensus 45 ~el~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~ 94 (321)
+.+-+++.++++-++..+.+..++..+..+-...-..+..++..|+.|+.
T Consensus 13 qr~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~ 62 (459)
T KOG0288|consen 13 QRLIDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQE 62 (459)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555544444444444444333333333333333333
No 289
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=81.23 E-value=57 Score=31.95 Aligned_cols=70 Identities=20% Similarity=0.238 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 124 QIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLE--------------KLQKINDEQKSKIRKTERALKVAEEEMM 189 (321)
Q Consensus 124 ~Ie~Lk~ele~~~~kk~~LEa~a~e~ekk~~el~~~le--------------~Lek~~~Eqk~~l~elE~~lq~~Eeei~ 189 (321)
.+..|+.++...-.+++++...+..-..+...+|..+. .+--.+.-+..+|..++.+..-+..-+.
T Consensus 141 q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL~erl~q~qeE~~l~k~~i~ 220 (319)
T PF09789_consen 141 QIEQLERDLQSLLDEKEELVTERDAYKCKAHRLNHELNYILNGDENRIVDIDALIMENRYLKERLKQLQEEKELLKQTIN 220 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444443 3333334445555555555555555555
Q ss_pred HHHH
Q 020809 190 RAKF 193 (321)
Q Consensus 190 kl~~ 193 (321)
+...
T Consensus 221 KYK~ 224 (319)
T PF09789_consen 221 KYKS 224 (319)
T ss_pred HHHH
Confidence 5433
No 290
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=81.23 E-value=15 Score=28.14 Aligned_cols=52 Identities=29% Similarity=0.332 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 140 EALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRA 191 (321)
Q Consensus 140 ~~LEa~a~e~ekk~~el~~~le~Lek~~~Eqk~~l~elE~~lq~~Eeei~kl 191 (321)
..+|+|..++|-+++.....++.|.....+|+..++++...+..+-+.+..+
T Consensus 4 ~~lE~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr~L~~kl~~~ 55 (72)
T COG2900 4 MELEARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLRLLTEKLKDL 55 (72)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3577888888888888888888888888899988888888777775555544
No 291
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=81.12 E-value=21 Score=36.72 Aligned_cols=12 Identities=17% Similarity=0.277 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q 020809 120 ELEKQIDNLKKE 131 (321)
Q Consensus 120 eL~k~Ie~Lk~e 131 (321)
+|+.++..|+.+
T Consensus 108 eLEaE~~~Lk~Q 119 (475)
T PRK13729 108 KLGQDNAALAEQ 119 (475)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 292
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=80.96 E-value=44 Score=30.49 Aligned_cols=48 Identities=10% Similarity=0.118 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 49 QLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKEL 96 (321)
Q Consensus 49 qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI 96 (321)
.++.-|.+++..+.+....+...-..-..++..+.+....+...+...
T Consensus 28 ~l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A 75 (219)
T TIGR02977 28 MIRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKA 75 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444444444443
No 293
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=80.92 E-value=73 Score=32.98 Aligned_cols=78 Identities=15% Similarity=0.195 Sum_probs=41.4
Q ss_pred cCCCCCCcccccCCCCchHHHHHH-------HHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 25 QGEDVPPLTASDAVDSSPLKIELD-------QLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELS 97 (321)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~l~~el~-------qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~ 97 (321)
|..+++-....-..+-.+|++.++ +-+-.|+.+.+.+.++.+.=-.--.+|.+....+-+++..|-.+--.+.
T Consensus 321 dnp~s~kliPVpvvGF~dL~~R~K~Q~q~~~~~r~ri~~i~e~v~eLqk~~ad~~~KI~~~k~r~~~Ls~RiLRv~ikqe 400 (508)
T KOG3091|consen 321 DNPPSNKLIPVPVVGFEDLRQRLKVQDQEVKQHRIRINAIGERVTELQKHHADAVAKIEEAKNRHVELSHRILRVMIKQE 400 (508)
T ss_pred cCCCcccccceeccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 443333324444555555555443 3333444444444444433333345666777777777777777766666
Q ss_pred HHHHH
Q 020809 98 SLQKK 102 (321)
Q Consensus 98 ~~qk~ 102 (321)
-+.+.
T Consensus 401 ilr~~ 405 (508)
T KOG3091|consen 401 ILRKR 405 (508)
T ss_pred HHhcc
Confidence 66554
No 294
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=80.68 E-value=23 Score=27.05 Aligned_cols=25 Identities=40% Similarity=0.384 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 75 VAQKEKAIQDKSERIVSLQKELSSL 99 (321)
Q Consensus 75 I~q~ek~i~e~~~~I~~Lq~eI~~~ 99 (321)
+++++..|...-..|..|+.+|+.+
T Consensus 6 l~~LE~ki~~aveti~~Lq~e~eeL 30 (72)
T PF06005_consen 6 LEQLEEKIQQAVETIALLQMENEEL 30 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444445555555555444
No 295
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=80.60 E-value=70 Score=35.50 Aligned_cols=11 Identities=27% Similarity=0.244 Sum_probs=5.0
Q ss_pred HHHHHHhhccc
Q 020809 244 ALEKKAQAGKW 254 (321)
Q Consensus 244 ~~~k~~~~~~~ 254 (321)
-++-++.+.||
T Consensus 651 kt~eas~~~kr 661 (913)
T KOG0244|consen 651 KTEEASAANKR 661 (913)
T ss_pred HHHHHHHHHHH
Confidence 33444445555
No 296
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=80.53 E-value=46 Score=30.42 Aligned_cols=57 Identities=12% Similarity=0.293 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 43 LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSL 99 (321)
Q Consensus 43 l~~el~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~ 99 (321)
++..+..++......+.......+.|.+....-++.+.-+..++..-.++...++..
T Consensus 9 lnrri~~leeele~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~~ 65 (205)
T KOG1003|consen 9 LNRRIQLLEEELDRAQERLATALQKLEEAEQAADESERGMKVIENRAQKLEEKMEAQ 65 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHHHHH
Confidence 333333333333333333333333333333333333444444444444444444444
No 297
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=80.52 E-value=59 Score=31.62 Aligned_cols=57 Identities=25% Similarity=0.435 Sum_probs=31.0
Q ss_pred chHHHHHHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 41 SPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSL 99 (321)
Q Consensus 41 ~~l~~el~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~ 99 (321)
-.+...|++++.++..+-. -++...+......|.+....|.++.++|..|+..|...
T Consensus 51 ~~fA~~ld~~~~kl~~Ms~--~ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y 107 (301)
T PF06120_consen 51 IEFADSLDELKEKLKEMSS--TQLRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKNY 107 (301)
T ss_pred HHHHHhhHHHHHHHHhcCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777777654422 12333444445555555555566666666666666443
No 298
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.50 E-value=81 Score=33.19 Aligned_cols=45 Identities=27% Similarity=0.234 Sum_probs=34.4
Q ss_pred CCchHHHHHHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHH
Q 020809 39 DSSPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQ 83 (321)
Q Consensus 39 ~~~~l~~el~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~ 83 (321)
+......++.-+++.+.+.+..|+...+.|+.+|+.|.++.-.+.
T Consensus 237 e~~~~~~e~~llr~t~~~~e~riEtqkqtl~ardesIkkLlEmLq 281 (654)
T KOG4809|consen 237 ELLTTKEEQFLLRSTDPSGEQRIETQKQTLDARDESIKKLLEMLQ 281 (654)
T ss_pred HhhhHHHHHHHHHhcCchHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 555666677778888888888888888888888888887765544
No 299
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=80.40 E-value=5.7 Score=39.46 Aligned_cols=83 Identities=20% Similarity=0.331 Sum_probs=19.4
Q ss_pred hhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 68 LKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKET---LNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEA 144 (321)
Q Consensus 68 Lk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~qk~~~---~~~eeq~~~~~~RireL~k~Ie~Lk~ele~~~~kk~~LEa 144 (321)
+.++...+.++.+++..+...+.....+|....+... ..+..+++.++.||.+|+..++.+...+......+..++.
T Consensus 100 l~el~~~~~elkkEie~IKk~q~e~~~~i~~~~~~~~~~~~~l~~Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~ 179 (370)
T PF02994_consen 100 LNELKKRIKELKKEIENIKKNQSEMKLEIENLKKKLENIDESLNSRIDELEERISELEDRIEEIEQAIKELEKRIKKLED 179 (370)
T ss_dssp ------------------H-------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3344444444455555554444444445544432110 1233444444444444444444444444444433344444
Q ss_pred HHHHHH
Q 020809 145 RAIEAE 150 (321)
Q Consensus 145 ~a~e~e 150 (321)
+..+++
T Consensus 180 kl~DlE 185 (370)
T PF02994_consen 180 KLDDLE 185 (370)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 300
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=80.25 E-value=21 Score=36.09 Aligned_cols=68 Identities=12% Similarity=0.240 Sum_probs=39.3
Q ss_pred HHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 65 TQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQ 136 (321)
Q Consensus 65 ~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~qk~~~~~~eeq~~~~~~RireL~k~Ie~Lk~ele~~~ 136 (321)
..+|-.+|.+-.++..+++.+..+.+.+..+|....+.+. + ..+.+..+++.|+.+|..+.+++....
T Consensus 29 vd~i~~ld~~~r~~~~~~~~l~~erN~~sk~i~~~~~~~~-~---~~~~l~~~~~~l~~~~~~~~~~~~~~~ 96 (418)
T TIGR00414 29 LEKLIALDDERKKLLSEIEELQAKRNELSKQIGKAKGQKK-D---KIEEIKKELKELKEELTELSAALKALE 96 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-c---hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777788888888887777777777765422121 0 023344455555554444444444443
No 301
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=80.23 E-value=10 Score=28.54 Aligned_cols=44 Identities=18% Similarity=0.413 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHH
Q 020809 49 QLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSL 92 (321)
Q Consensus 49 qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~L 92 (321)
+++.++...+..+++..+.++.++...+..+..+..+..+|..+
T Consensus 3 ~i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I 46 (71)
T PF10779_consen 3 DIKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKI 46 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555444444444444444444444443433333
No 302
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=80.22 E-value=92 Score=33.66 Aligned_cols=11 Identities=36% Similarity=0.090 Sum_probs=4.2
Q ss_pred HHhhhhhhhhh
Q 020809 259 VETIKAKWIPA 269 (321)
Q Consensus 259 ~~~~~~k~~p~ 269 (321)
|+.++.-...+
T Consensus 677 veK~k~~a~EA 687 (786)
T PF05483_consen 677 VEKAKLTADEA 687 (786)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 303
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=80.20 E-value=23 Score=26.79 Aligned_cols=59 Identities=24% Similarity=0.269 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 43 LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQK 101 (321)
Q Consensus 43 l~~el~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~qk 101 (321)
++..+..|+.++..+..+++.....++.+..+=+.....+...-..+..|..+++.+++
T Consensus 3 Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~ 61 (69)
T PF14197_consen 3 LEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRK 61 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555555555566666666666666666643
No 304
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=80.11 E-value=47 Score=30.22 Aligned_cols=84 Identities=18% Similarity=0.231 Sum_probs=38.7
Q ss_pred chHHHHHHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 020809 41 SPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADE 120 (321)
Q Consensus 41 ~~l~~el~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~qk~~~~~~eeq~~~~~~Rire 120 (321)
++.+..--.|+.+...++..|..-..++..+...|+-....-......-.....+. ..++.+...+..+++.
T Consensus 101 A~~eirR~~LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea--------~aL~~e~~aaqaQL~~ 172 (192)
T PF11180_consen 101 ADVEIRRAQLEAQKAQLERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEA--------QALEAERRAAQAQLRQ 172 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHH
Confidence 33334444455555555555555544444444444444333333333333333333 3344444455556666
Q ss_pred HHHHHHHHHHHH
Q 020809 121 LEKQIDNLKKES 132 (321)
Q Consensus 121 L~k~Ie~Lk~el 132 (321)
|..+|..|+.+.
T Consensus 173 lQ~qv~~Lq~q~ 184 (192)
T PF11180_consen 173 LQRQVRQLQRQA 184 (192)
T ss_pred HHHHHHHHHHHh
Confidence 666666555543
No 305
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=79.91 E-value=49 Score=30.34 Aligned_cols=12 Identities=17% Similarity=0.307 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q 020809 125 IDNLKKESEKQQ 136 (321)
Q Consensus 125 Ie~Lk~ele~~~ 136 (321)
|..+..++...+
T Consensus 89 l~~le~El~~Lr 100 (202)
T PF06818_consen 89 LGQLEAELAELR 100 (202)
T ss_pred hhhhHHHHHHHH
Confidence 333333333333
No 306
>PF15294 Leu_zip: Leucine zipper
Probab=79.77 E-value=60 Score=31.23 Aligned_cols=22 Identities=14% Similarity=0.374 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 020809 158 AKLEKLQKINDEQKSKIRKTER 179 (321)
Q Consensus 158 ~~le~Lek~~~Eqk~~l~elE~ 179 (321)
.....|..+....+.+|.++.+
T Consensus 253 ~ay~NMk~~ltkKn~QiKeLRk 274 (278)
T PF15294_consen 253 AAYRNMKEILTKKNEQIKELRK 274 (278)
T ss_pred HHHHHhHHHHHhccHHHHHHHH
Confidence 3334444444444444444443
No 307
>PRK10869 recombination and repair protein; Provisional
Probab=79.65 E-value=84 Score=32.90 Aligned_cols=14 Identities=21% Similarity=0.112 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHH
Q 020809 140 EALEARAIEAEKKI 153 (321)
Q Consensus 140 ~~LEa~a~e~ekk~ 153 (321)
+.++.|...+....
T Consensus 299 ~~ie~Rl~~l~~L~ 312 (553)
T PRK10869 299 AELEQRLSKQISLA 312 (553)
T ss_pred HHHHHHHHHHHHHH
Confidence 44555555444433
No 308
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=79.54 E-value=88 Score=33.04 Aligned_cols=12 Identities=17% Similarity=0.219 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHH
Q 020809 125 IDNLKKESEKQQ 136 (321)
Q Consensus 125 Ie~Lk~ele~~~ 136 (321)
++.|.+-+|..+
T Consensus 671 ~~~L~~~iET~~ 682 (741)
T KOG4460|consen 671 LRHLGNAIETVT 682 (741)
T ss_pred HHHHHHHHHHHH
Confidence 344444444333
No 309
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=79.37 E-value=47 Score=29.83 Aligned_cols=36 Identities=17% Similarity=0.235 Sum_probs=23.1
Q ss_pred HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 66 QELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQK 101 (321)
Q Consensus 66 ~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~qk 101 (321)
.++..+|..|..++..++.+...+...+++|.++..
T Consensus 79 eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s 114 (201)
T KOG4603|consen 79 EELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSS 114 (201)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666666666666666666654
No 310
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=79.29 E-value=20 Score=37.75 Aligned_cols=62 Identities=15% Similarity=0.273 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 132 SEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKF 193 (321)
Q Consensus 132 le~~~~kk~~LEa~a~e~ekk~~el~~~le~Lek~~~Eqk~~l~elE~~lq~~Eeei~kl~~ 193 (321)
++....++.+||.++.++...++++|.+++.+.+.....+..+..++-...+++..+.++..
T Consensus 88 ~~sVs~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~ 149 (907)
T KOG2264|consen 88 LASVSLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELRE 149 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHh
Confidence 33444455666777777777777777777777766666666666666666666666655533
No 311
>PF15294 Leu_zip: Leucine zipper
Probab=79.19 E-value=62 Score=31.11 Aligned_cols=71 Identities=32% Similarity=0.461 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHH
Q 020809 121 LEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKS---------KIRKTERALKVAEEEMMRA 191 (321)
Q Consensus 121 L~k~Ie~Lk~ele~~~~kk~~LEa~a~e~ekk~~el~~~le~Lek~~~Eqk~---------~l~elE~~lq~~Eeei~kl 191 (321)
|+++|.+|+.+.+..+.+...++.++..+-.....++..+..++.....++. ++..++.....+..++.+.
T Consensus 130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~~~~~k~~~~~~~q~l~dLE~k~a~lK~e~ek~ 209 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQDEQGDQKGKKDLSFKAQDLSDLENKMAALKSELEKA 209 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccchhhHHHHHHHHHHHHHHH
Confidence 7888999999999999999999998888888888899999998886665554 3344555554444444443
No 312
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=79.16 E-value=72 Score=31.80 Aligned_cols=28 Identities=18% Similarity=0.283 Sum_probs=19.8
Q ss_pred CCchHHHHHHHHHHHHHHHHHhHHHHHH
Q 020809 39 DSSPLKIELDQLKSKIRSLESHIDEKTQ 66 (321)
Q Consensus 39 ~~~~l~~el~qlk~ki~~Les~i~e~~~ 66 (321)
+...+..++.+++..+..++.+++.+..
T Consensus 90 ~~~~~~~~~~~~~~~l~~~~~q~~~l~~ 117 (421)
T TIGR03794 90 FQPELRERLQESYQKLTQLQEQLEEVRN 117 (421)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667777888888888777776654
No 313
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=79.12 E-value=33 Score=27.93 Aligned_cols=38 Identities=34% Similarity=0.461 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 107 AAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEA 144 (321)
Q Consensus 107 ~eeq~~~~~~RireL~k~Ie~Lk~ele~~~~kk~~LEa 144 (321)
.++-...++.|+..|++.++.+.+.+.....+...+..
T Consensus 85 ~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~ 122 (129)
T cd00890 85 LEEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQE 122 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555555555555555555544444443
No 314
>PRK11519 tyrosine kinase; Provisional
Probab=78.90 E-value=1e+02 Score=33.32 Aligned_cols=25 Identities=12% Similarity=0.100 Sum_probs=9.6
Q ss_pred HhHHHHHHhhhcHHHHHHHHHHHHH
Q 020809 59 SHIDEKTQELKGKDEVVAQKEKAIQ 83 (321)
Q Consensus 59 s~i~e~~~eLk~kd~~I~q~ek~i~ 83 (321)
+.++=+.+++..+..+++..+..++
T Consensus 267 ~a~~fL~~ql~~l~~~L~~aE~~l~ 291 (719)
T PRK11519 267 KSLAFLAQQLPEVRSRLDVAENKLN 291 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333433333333
No 315
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=78.88 E-value=25 Score=28.76 Aligned_cols=44 Identities=18% Similarity=0.245 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHH
Q 020809 43 LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKS 86 (321)
Q Consensus 43 l~~el~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~ 86 (321)
++.+..-|+.-+-+-+..-.++..+|+.++..|...+.++..+.
T Consensus 10 LraQ~~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~ 53 (102)
T PF10205_consen 10 LRAQNQVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLT 53 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444455555555555555555555544444433
No 316
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=78.73 E-value=62 Score=31.21 Aligned_cols=41 Identities=17% Similarity=0.311 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHH
Q 020809 46 ELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKS 86 (321)
Q Consensus 46 el~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~ 86 (321)
=|+|.+=-|..|..++.+....|.+.|.+|+++..++..+.
T Consensus 62 PLQQKEV~iRHLkakLkes~~~l~dRetEI~eLksQL~RMr 102 (305)
T PF15290_consen 62 PLQQKEVCIRHLKAKLKESENRLHDRETEIDELKSQLARMR 102 (305)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 35666666777777666666666666666555555554443
No 317
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=78.55 E-value=28 Score=26.76 Aligned_cols=32 Identities=25% Similarity=0.326 Sum_probs=24.9
Q ss_pred hhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 68 LKGKDEVVAQKEKAIQDKSERIVSLQKELSSL 99 (321)
Q Consensus 68 Lk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~ 99 (321)
+++.+..|+.+.++--.+.-.|.-|+..+...
T Consensus 2 lrEqe~~i~~L~KENF~LKLrI~fLee~l~~~ 33 (75)
T PF07989_consen 2 LREQEEQIDKLKKENFNLKLRIYFLEERLQKL 33 (75)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhc
Confidence 45667888888888888888888888887643
No 318
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=78.42 E-value=28 Score=35.78 Aligned_cols=24 Identities=13% Similarity=0.264 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 72 DEVVAQKEKAIQDKSERIVSLQKE 95 (321)
Q Consensus 72 d~~I~q~ek~i~e~~~~I~~Lq~e 95 (321)
.+.|..+-..+.++..++..|..+
T Consensus 58 ~DTlrTlva~~k~~r~~~~~l~~~ 81 (472)
T TIGR03752 58 ADTLRTLVAEVKELRKRLAKLISE 81 (472)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444443
No 319
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=78.27 E-value=1.2 Score=47.80 Aligned_cols=31 Identities=26% Similarity=0.348 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhHHHHHHhhhcHHHHHHHHH
Q 020809 49 QLKSKIRSLESHIDEKTQELKGKDEVVAQKE 79 (321)
Q Consensus 49 qlk~ki~~Les~i~e~~~eLk~kd~~I~q~e 79 (321)
+++..-..|..++..+..++..++..|..++
T Consensus 347 ~lq~~~~~L~ek~g~~~~~~~~l~~~~~~Le 377 (722)
T PF05557_consen 347 QLQQENASLTEKLGSLQSELRELEEEIQELE 377 (722)
T ss_dssp -------------------------------
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333
No 320
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=78.09 E-value=54 Score=29.75 Aligned_cols=31 Identities=26% Similarity=0.393 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 107 AAEQVDKAHARADELEKQIDNLKKESEKQQK 137 (321)
Q Consensus 107 ~eeq~~~~~~RireL~k~Ie~Lk~ele~~~~ 137 (321)
-+++.+.+......|.++++.++.++...+.
T Consensus 114 tEer~~el~kklnslkk~~e~lr~el~k~~e 144 (203)
T KOG3433|consen 114 TEERTDELTKKLNSLKKILESLRWELAKIQE 144 (203)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444444444444444445555555554443
No 321
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=78.08 E-value=44 Score=28.72 Aligned_cols=30 Identities=30% Similarity=0.423 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 106 NAAEQVDKAHARADELEKQIDNLKKESEKQ 135 (321)
Q Consensus 106 ~~eeq~~~~~~RireL~k~Ie~Lk~ele~~ 135 (321)
.+......+...+..=++.|+.|+.+.+..
T Consensus 65 ~Lr~~~~~~~~~l~~re~~i~rL~~ENe~l 94 (135)
T TIGR03495 65 QLRQQLAQARALLAQREQRIERLKRENEDL 94 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCHHH
Confidence 333333333333333444455555544443
No 322
>PRK10698 phage shock protein PspA; Provisional
Probab=77.89 E-value=58 Score=30.02 Aligned_cols=142 Identities=18% Similarity=0.194 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hhHHHHHH----HHHHHHH
Q 020809 49 QLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKK-------ETLNAAEQ----VDKAHAR 117 (321)
Q Consensus 49 qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~qk~-------~~~~~eeq----~~~~~~R 117 (321)
.++.=|.+++..+.++ ...+...-..-..++.++..++..+...+.. +..++-.. ...+..+
T Consensus 28 ~l~q~i~em~~~l~~~-------r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~EdLAr~AL~~K~~~~~~ 100 (222)
T PRK10698 28 LVRLMIQEMEDTLVEV-------RSTSARALAEKKQLTRRIEQAEAQQVEWQEKAELALRKEKEDLARAALIEKQKLTDL 100 (222)
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 3334444444444444 4445554444445555555555555554443 22222211 1112233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Q 020809 118 ADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQK----SKIRKTERALKVAEEEMMRAKF 193 (321)
Q Consensus 118 ireL~k~Ie~Lk~ele~~~~kk~~LEa~a~e~ekk~~el~~~le~Lek~~~Eqk----~~l~elE~~lq~~Eeei~kl~~ 193 (321)
+..|+.+++.....++..+.....|+.+..++..+...+-......+....-.. ......-..+...|+.+.+++.
T Consensus 101 ~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~~~~~~~~~~~~~~a~~~f~rmE~ki~~~Ea 180 (222)
T PRK10698 101 IATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASSSRDVRRQLDSGKLDEAMARFESFERRIDQMEA 180 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444333333333322222111111 1122333455556667777666
Q ss_pred HHhh
Q 020809 194 EATS 197 (321)
Q Consensus 194 ea~~ 197 (321)
++..
T Consensus 181 ~aea 184 (222)
T PRK10698 181 EAES 184 (222)
T ss_pred HHhH
Confidence 6654
No 323
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=77.89 E-value=35 Score=31.95 Aligned_cols=12 Identities=33% Similarity=0.567 Sum_probs=4.4
Q ss_pred HHHHHHHHHHHH
Q 020809 125 IDNLKKESEKQQ 136 (321)
Q Consensus 125 Ie~Lk~ele~~~ 136 (321)
++.+.++.+...
T Consensus 144 l~E~~~EkeeL~ 155 (290)
T COG4026 144 LEELQKEKEELL 155 (290)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 324
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=77.84 E-value=67 Score=30.71 Aligned_cols=12 Identities=17% Similarity=0.338 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHH
Q 020809 113 KAHARADELEKQ 124 (321)
Q Consensus 113 ~~~~RireL~k~ 124 (321)
...+|+..|+..
T Consensus 208 R~qKRL~sLq~v 219 (267)
T PF10234_consen 208 RNQKRLQSLQSV 219 (267)
T ss_pred HHHHHHHHHHhc
Confidence 344555555544
No 325
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=77.65 E-value=1.7 Score=36.02 Aligned_cols=59 Identities=12% Similarity=0.203 Sum_probs=20.6
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 42 PLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQ 100 (321)
Q Consensus 42 ~l~~el~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~q 100 (321)
.+..=|+.+...+..|..++.++..++..+...|.........+...+...+...+.+.
T Consensus 22 eVD~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l~~aq~~a~~~~ 80 (131)
T PF05103_consen 22 EVDDFLDELAEELERLQRENAELKEEIEELQAQLEELREEEESLQRALIQAQETADEIK 80 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCT--------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhhhhhhHHHHH
Confidence 34455666666666666666666666666666666665555555555555554444443
No 326
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=77.64 E-value=18 Score=27.71 Aligned_cols=53 Identities=21% Similarity=0.350 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 49 QLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQK 101 (321)
Q Consensus 49 qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~qk 101 (321)
.++.+|.+||..+.--.+-|.+++..+.+.+..+..+..++..|-+++.+.+.
T Consensus 5 ~lE~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr~L~~kl~~~~~ 57 (72)
T COG2900 5 ELEARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLRLLTEKLKDLQP 57 (72)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 45666777777777766666677777777777777777777777666655543
No 327
>KOG2685 consensus Cystoskeletal protein Tektin [Cytoskeleton]
Probab=77.59 E-value=85 Score=31.81 Aligned_cols=28 Identities=14% Similarity=0.248 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 72 DEVVAQKEKAIQDKSERIVSLQKELSSL 99 (321)
Q Consensus 72 d~~I~q~ek~i~e~~~~I~~Lq~eI~~~ 99 (321)
...-++++..+...-.+|...++.|..+
T Consensus 284 qdar~kL~~ql~k~leEi~~~e~~I~~l 311 (421)
T KOG2685|consen 284 QDARNKLEWQLAKTLEEIADAENNIEAL 311 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 3333333333333444444444444444
No 328
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=77.39 E-value=81 Score=31.44 Aligned_cols=107 Identities=18% Similarity=0.248 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHH
Q 020809 92 LQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAE----------KKISDLSAKLE 161 (321)
Q Consensus 92 Lq~eI~~~qk~~~~~~eeq~~~~~~RireL~k~Ie~Lk~ele~~~~kk~~LEa~a~e~e----------kk~~el~~~le 161 (321)
|...|..++. ....++-+..+....|.++++.|+.|+..+.....-....+.|...-. .=...|...+.
T Consensus 249 l~~Ri~et~~-ak~~Le~ql~~~~~ei~~~e~~i~~L~~ai~~k~~~lkvaqTRL~~R~~RP~vElcrD~~q~~L~~Ev~ 327 (384)
T PF03148_consen 249 LRKRIHETQE-AKNELEWQLKKTLQEIAEMEKNIEDLEKAIRDKEGPLKVAQTRLENRTQRPNVELCRDPPQYGLIEEVK 327 (384)
T ss_pred HHHHHHHHHH-HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHhcCCchHHHHhhHHHHHHHHHH
Confidence 4455555533 445566666666666777777777777666665544433333332221 01122333445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 020809 162 KLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSRS 199 (321)
Q Consensus 162 ~Lek~~~Eqk~~l~elE~~lq~~Eeei~kl~~ea~~~a 199 (321)
.+.........+|...+..+..+..-..+++.+..-+.
T Consensus 328 ~l~~~i~~L~~~L~~a~~~l~~L~~~~~~Le~di~~K~ 365 (384)
T PF03148_consen 328 ELRESIEALQEKLDEAEASLQKLERTRLRLEEDIAVKN 365 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555556666666666666666666655555443
No 329
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=77.19 E-value=50 Score=28.95 Aligned_cols=31 Identities=23% Similarity=0.395 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhhhcHHH
Q 020809 43 LKIELDQLKSKIRSLESHIDEKTQELKGKDE 73 (321)
Q Consensus 43 l~~el~qlk~ki~~Les~i~e~~~eLk~kd~ 73 (321)
.+.+++.++.+...+..++..+..+|..+++
T Consensus 4 k~~~i~~~Rl~~~~lk~~l~k~~~ql~~ke~ 34 (177)
T PF13870_consen 4 KRNEISKLRLKNITLKHQLAKLEEQLRQKEE 34 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777777777777666666654
No 330
>PF15456 Uds1: Up-regulated During Septation
Probab=76.94 E-value=44 Score=28.18 Aligned_cols=34 Identities=18% Similarity=0.380 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 105 LNAAEQVDKAHARADELEKQIDNLKKESEKQQKE 138 (321)
Q Consensus 105 ~~~eeq~~~~~~RireL~k~Ie~Lk~ele~~~~k 138 (321)
...++....+..++.++..++..+.+.+...+.+
T Consensus 77 ~~~eeel~~~~rk~ee~~~eL~~le~R~~~~~~r 110 (124)
T PF15456_consen 77 LKAEEELAESDRKCEELAQELWKLENRLAEVRQR 110 (124)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555566666666666666665555555533
No 331
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=76.81 E-value=13 Score=27.45 Aligned_cols=28 Identities=14% Similarity=0.294 Sum_probs=16.6
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHhhh
Q 020809 42 PLKIELDQLKSKIRSLESHIDEKTQELK 69 (321)
Q Consensus 42 ~l~~el~qlk~ki~~Les~i~e~~~eLk 69 (321)
++++.|..|+.++++.+........+++
T Consensus 29 tiEqRLa~LE~rL~~ae~ra~~ae~~~~ 56 (60)
T PF11471_consen 29 TIEQRLAALEQRLQAAEQRAQAAEARAK 56 (60)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666666666666666655544443
No 332
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=76.78 E-value=24 Score=35.67 Aligned_cols=67 Identities=21% Similarity=0.301 Sum_probs=38.7
Q ss_pred HHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 65 TQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQ 136 (321)
Q Consensus 65 ~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~qk~~~~~~eeq~~~~~~RireL~k~Ie~Lk~ele~~~ 136 (321)
..+|-.+|.+..++..+++.+..+.+.+..+|....+.+. ..+.+..+++.|+++|..+++++..++
T Consensus 27 vd~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~-----~~~~l~~~~~~l~~~~~~~~~~~~~~~ 93 (425)
T PRK05431 27 VDELLELDEERRELQTELEELQAERNALSKEIGQAKRKGE-----DAEALIAEVKELKEEIKALEAELDELE 93 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-----cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777888888888888888888888887765433221 122344444444444444444444433
No 333
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=76.67 E-value=1.4e+02 Score=33.80 Aligned_cols=33 Identities=21% Similarity=0.294 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 113 KAHARADELEKQIDNLKKESEKQQKEKEALEAR 145 (321)
Q Consensus 113 ~~~~RireL~k~Ie~Lk~ele~~~~kk~~LEa~ 145 (321)
.++.+.+.+++.+..--.+++..+.+...+...
T Consensus 480 ~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~ 512 (1041)
T KOG0243|consen 480 LLKEEKEKLKSKLQNKNKELESLKEELQQAKAT 512 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444333333333
No 334
>PRK14011 prefoldin subunit alpha; Provisional
Probab=76.38 E-value=50 Score=28.55 Aligned_cols=30 Identities=20% Similarity=0.288 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 107 AAEQVDKAHARADELEKQIDNLKKESEKQQ 136 (321)
Q Consensus 107 ~eeq~~~~~~RireL~k~Ie~Lk~ele~~~ 136 (321)
.++-.+.++.|+..|++..+.+...+++.+
T Consensus 86 ~~eA~~~~~~ri~~l~~~~~~l~~~i~~~~ 115 (144)
T PRK14011 86 VSEVIEDFKKSVEELDKTKKEGNKKIEELN 115 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444455555555544444444444444
No 335
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=76.32 E-value=34 Score=26.56 Aligned_cols=53 Identities=17% Similarity=0.298 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 45 IELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELS 97 (321)
Q Consensus 45 ~el~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~ 97 (321)
.-+++++.-+..++.+++.+..++...-...+..-..++.+...++.+-..+.
T Consensus 26 ~~l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~k~~~v~~~~~~v~ 78 (90)
T PF06103_consen 26 KTLDEVNKTIDTLQEQVDPITKEINDLLHNTNELLEDVNEKLEKVDPVFEAVA 78 (90)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 44555566666666666665555555555555555444444444444444433
No 336
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=76.11 E-value=47 Score=28.13 Aligned_cols=25 Identities=8% Similarity=0.213 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 108 AEQVDKAHARADELEKQIDNLKKES 132 (321)
Q Consensus 108 eeq~~~~~~RireL~k~Ie~Lk~el 132 (321)
+.+...+..+..+|+.....+..++
T Consensus 79 ~~~~~~l~~~~~~l~~~~~~~~~~l 103 (158)
T PF03938_consen 79 QKRQQELQQKEQELQQFQQQAQQQL 103 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444333
No 337
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=75.96 E-value=60 Score=29.19 Aligned_cols=34 Identities=21% Similarity=0.235 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHH
Q 020809 46 ELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKE 79 (321)
Q Consensus 46 el~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~e 79 (321)
++..|..+|..|+.+..++.+.....+.+|..+.
T Consensus 80 el~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~ 113 (201)
T KOG4603|consen 80 ELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELS 113 (201)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444433
No 338
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=75.69 E-value=62 Score=33.72 Aligned_cols=85 Identities=16% Similarity=0.222 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHHHHHH
Q 020809 44 KIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKK---ETLNAAEQVDKAHARADE 120 (321)
Q Consensus 44 ~~el~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~qk~---~~~~~eeq~~~~~~Rire 120 (321)
..++++|-.++....++.--.-.+-..+-..++..++....+..++..+...|..+|.+ ....++.|++.+-..+-.
T Consensus 419 ~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr~NYE~QLs~MSEHLas 498 (518)
T PF10212_consen 419 MSRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDELETTRRNYEEQLSMMSEHLAS 498 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 33444444444444444443333444444444444444444444444444444444322 113444444444444333
Q ss_pred HHHHHHHH
Q 020809 121 LEKQIDNL 128 (321)
Q Consensus 121 L~k~Ie~L 128 (321)
|++.+..-
T Consensus 499 mNeqL~~Q 506 (518)
T PF10212_consen 499 MNEQLAKQ 506 (518)
T ss_pred HHHHHHHH
Confidence 33333333
No 339
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=75.67 E-value=50 Score=28.14 Aligned_cols=10 Identities=30% Similarity=0.461 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 020809 87 ERIVSLQKEL 96 (321)
Q Consensus 87 ~~I~~Lq~eI 96 (321)
.++..|++.+
T Consensus 66 ~d~~~l~~~~ 75 (151)
T PF11559_consen 66 SDIERLQNDV 75 (151)
T ss_pred hHHHHHHHHH
Confidence 3333333333
No 340
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=75.62 E-value=32 Score=25.89 Aligned_cols=74 Identities=16% Similarity=0.340 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 020809 47 LDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQID 126 (321)
Q Consensus 47 l~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~qk~~~~~~eeq~~~~~~RireL~k~Ie 126 (321)
.+++..++..+...-. .++...|..++..|.+...-|..++-++..+-. .....++.|++..+..+.
T Consensus 5 ~~~i~~~l~~~~~~~~------~~r~~~i~~~e~~l~ea~~~l~qMe~E~~~~p~-------s~r~~~~~kl~~yr~~l~ 71 (79)
T PF05008_consen 5 TAEIKSKLERIKNLSG------EQRKSLIREIERDLDEAEELLKQMELEVRSLPP-------SERNQYKSKLRSYRSELK 71 (79)
T ss_dssp HHHHHHHHHHGGGS-C------HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-H-------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccCh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH-------HHHHHHHHHHHHHHHHHH
Confidence 3445555555542221 244555555555555555666666665554421 223456678888888777
Q ss_pred HHHHHHH
Q 020809 127 NLKKESE 133 (321)
Q Consensus 127 ~Lk~ele 133 (321)
.|+.+++
T Consensus 72 ~lk~~l~ 78 (79)
T PF05008_consen 72 KLKKELK 78 (79)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 7777664
No 341
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=75.54 E-value=1e+02 Score=31.58 Aligned_cols=86 Identities=14% Similarity=0.173 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 111 VDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMR 190 (321)
Q Consensus 111 ~~~~~~RireL~k~Ie~Lk~ele~~~~kk~~LEa~a~e~ekk~~el~~~le~Lek~~~Eqk~~l~elE~~lq~~Eeei~k 190 (321)
.+.++.|++.|..+...|...+...+.....|.........++..+.-.+-..++....+...|...+++...+++-|..
T Consensus 299 ~Enlqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~~eq~l~~rm~d~Lrrfq~ekeatqELiee 378 (502)
T KOG0982|consen 299 KENLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLICEQKLRVRMNDILRRFQEEKEATQELIEE 378 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 34555566666666666666666666666666666656666666666666666666666666666666666666666666
Q ss_pred HHHHHh
Q 020809 191 AKFEAT 196 (321)
Q Consensus 191 l~~ea~ 196 (321)
+..+..
T Consensus 379 lrkele 384 (502)
T KOG0982|consen 379 LRKELE 384 (502)
T ss_pred HHHHHH
Confidence 644443
No 342
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=75.50 E-value=14 Score=30.19 Aligned_cols=54 Identities=15% Similarity=0.332 Sum_probs=26.8
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHH--HHhhhcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 42 PLKIELDQLKSKIRSLESHIDEK--TQELKGKDEVVAQKEKAIQDKSERIVSLQKE 95 (321)
Q Consensus 42 ~l~~el~qlk~ki~~Les~i~e~--~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~e 95 (321)
.+...++....++..+|+.++.+ .+++..+...|.+...++..++.+|..+...
T Consensus 39 ~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~ 94 (106)
T PF10805_consen 39 KLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQ 94 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 34444455555555555555555 4555555555555555554444444444333
No 343
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=74.79 E-value=79 Score=30.06 Aligned_cols=28 Identities=14% Similarity=0.228 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhhhc
Q 020809 43 LKIELDQLKSKIRSLESHIDEKTQELKG 70 (321)
Q Consensus 43 l~~el~qlk~ki~~Les~i~e~~~eLk~ 70 (321)
....+.+++.++...+..++.....+..
T Consensus 53 ~~~~~~~a~a~l~~a~a~~~~~~~~~~~ 80 (327)
T TIGR02971 53 RTAELDVARTQLDEAKARLAQVRAGAKK 80 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccH
Confidence 3456666777776666666555444433
No 344
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=74.79 E-value=26 Score=25.59 Aligned_cols=23 Identities=9% Similarity=0.140 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 020809 72 DEVVAQKEKAIQDKSERIVSLQK 94 (321)
Q Consensus 72 d~~I~q~ek~i~e~~~~I~~Lq~ 94 (321)
..+++++..++..+...+...+.
T Consensus 16 ~~kvdqLs~dv~~lr~~v~~ak~ 38 (56)
T PF04728_consen 16 NSKVDQLSSDVNALRADVQAAKE 38 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444333333344333333
No 345
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=74.70 E-value=13 Score=27.15 Aligned_cols=17 Identities=18% Similarity=0.235 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 020809 75 VAQKEKAIQDKSERIVS 91 (321)
Q Consensus 75 I~q~ek~i~e~~~~I~~ 91 (321)
|+..++++.+++..|..
T Consensus 16 i~tvk~en~~i~~~ve~ 32 (55)
T PF05377_consen 16 INTVKKENEEISESVEK 32 (55)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 346
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=74.69 E-value=32 Score=32.48 Aligned_cols=52 Identities=12% Similarity=0.151 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 44 KIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKE 95 (321)
Q Consensus 44 ~~el~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~e 95 (321)
+..+..+...+..-....-++.++|..+..+|+.+...|++...+|..++.+
T Consensus 39 ~~r~~~le~~~~~~~~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~r 90 (263)
T PRK10803 39 EDRVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVER 90 (263)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3444444444443333333444444444444444444444444444444443
No 347
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=74.68 E-value=80 Score=30.22 Aligned_cols=39 Identities=21% Similarity=0.354 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 125 IDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKL 163 (321)
Q Consensus 125 Ie~Lk~ele~~~~kk~~LEa~a~e~ekk~~el~~~le~L 163 (321)
+..++..+.+.+.+...|+.+...+.+.+.-+.+++...
T Consensus 223 ~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV~kf 261 (269)
T PF05278_consen 223 VKEIKERITEMKGRLGELEMESTRLSKTIKSIKSKVEKF 261 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444445555555556666666666666666655543
No 348
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=74.37 E-value=46 Score=27.19 Aligned_cols=100 Identities=21% Similarity=0.327 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 020809 46 ELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQI 125 (321)
Q Consensus 46 el~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~qk~~~~~~eeq~~~~~~RireL~k~I 125 (321)
++...+..+..-...+......+......|...+..|.+--. ....-|..+.. +...+..+.+............|
T Consensus 8 e~~~~~~~l~~kr~e~~~~~~~~~~~e~~L~~~e~~l~~~~~---~f~~flken~~-k~~rA~k~a~~e~k~~~~k~~ei 83 (126)
T PF13863_consen 8 EMFLVQLALDTKREEIERREEQLKQREEELEKKEQELEEDVI---KFDKFLKENEA-KRERAEKRAEEEKKKKEEKEAEI 83 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444443333222 23333333322 22223333333333333345555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 126 DNLKKESEKQQKEKEALEARAIEA 149 (321)
Q Consensus 126 e~Lk~ele~~~~kk~~LEa~a~e~ 149 (321)
..|..++..++..+..++......
T Consensus 84 ~~l~~~l~~l~~~~~k~e~~l~~~ 107 (126)
T PF13863_consen 84 KKLKAELEELKSEISKLEEKLEEY 107 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566655555555555555444433
No 349
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=74.25 E-value=27 Score=31.06 Aligned_cols=14 Identities=29% Similarity=0.503 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHh
Q 020809 47 LDQLKSKIRSLESH 60 (321)
Q Consensus 47 l~qlk~ki~~Les~ 60 (321)
+..++.+...+..+
T Consensus 127 l~~~~~~~~~~~kq 140 (192)
T PF05529_consen 127 LIKLEEKLEALKKQ 140 (192)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 350
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=74.22 E-value=40 Score=26.41 Aligned_cols=29 Identities=28% Similarity=0.423 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 113 KAHARADELEKQIDNLKKESEKQQKEKEA 141 (321)
Q Consensus 113 ~~~~RireL~k~Ie~Lk~ele~~~~kk~~ 141 (321)
.++.++..++..|..+...+.....+...
T Consensus 66 ~L~~~~~~~~~~i~~l~~~~~~l~~~l~~ 94 (106)
T PF01920_consen 66 ELEERIEKLEKEIKKLEKQLKYLEKKLKE 94 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444433333
No 351
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=74.20 E-value=12 Score=31.87 Aligned_cols=45 Identities=20% Similarity=0.358 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHH
Q 020809 43 LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSE 87 (321)
Q Consensus 43 l~~el~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~ 87 (321)
+..++++.++.+...+..+..+..+++.+|.+|..+...+.+...
T Consensus 78 l~a~~~e~qsli~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~ 122 (131)
T PF04859_consen 78 LAAEIQEQQSLIKTYEIVVKKLEAELRAKDSEIDRLREKLDELNR 122 (131)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555555555554444444433
No 352
>PRK15396 murein lipoprotein; Provisional
Probab=74.07 E-value=21 Score=27.81 Aligned_cols=19 Identities=32% Similarity=0.672 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHhHHHH
Q 020809 46 ELDQLKSKIRSLESHIDEK 64 (321)
Q Consensus 46 el~qlk~ki~~Les~i~e~ 64 (321)
+++++.++++.|.++++.+
T Consensus 26 kvd~LssqV~~L~~kvdql 44 (78)
T PRK15396 26 KIDQLSSDVQTLNAKVDQL 44 (78)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 5555555555544444433
No 353
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=73.99 E-value=13 Score=38.17 Aligned_cols=51 Identities=10% Similarity=0.226 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 46 ELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKEL 96 (321)
Q Consensus 46 el~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI 96 (321)
.+.+.+.+..+||.+++.+.+++..........+..|++++.++..|+.++
T Consensus 70 ALteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 70 ATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 355555555556555555544444444444444555555555555554444
No 354
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=73.76 E-value=1.2e+02 Score=31.50 Aligned_cols=144 Identities=20% Similarity=0.267 Sum_probs=0.0
Q ss_pred CCchHHHHHHHHHHHHHHHHHhHHHHHHhhhcHHHHHHH----HHHHHHHHHHHHHHH---HHHHHHHHHH---hhHHHH
Q 020809 39 DSSPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQ----KEKAIQDKSERIVSL---QKELSSLQKK---ETLNAA 108 (321)
Q Consensus 39 ~~~~l~~el~qlk~ki~~Les~i~e~~~eLk~kd~~I~q----~ek~i~e~~~~I~~L---q~eI~~~qk~---~~~~~e 108 (321)
++..++.+.+.++..+..|+.+++.+.-++...+..... .+......+..+..+ +.++.....+ -..+..
T Consensus 275 el~~l~~E~~~~~ee~~~l~~Qi~~l~~e~~d~e~~~~~~~~~~~~~~~~~~~~~~~~~~~e~e~~l~~~el~~~~ee~~ 354 (511)
T PF09787_consen 275 ELEELKQERDHLQEEIQLLERQIEQLRAELQDLEAQLEGEQESFREQPQELSQQLEPELTTEAELRLYYQELYHYREELS 354 (511)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 109 EQVDKAHARADELEKQIDNLKKESEKQQ--KEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALK 182 (321)
Q Consensus 109 eq~~~~~~RireL~k~Ie~Lk~ele~~~--~kk~~LEa~a~e~ekk~~el~~~le~Lek~~~Eqk~~l~elE~~lq 182 (321)
.+..-+..|+.+-..+|..++..+...- .-..++|.+...+-..+=.-+..++.+...+.-...+++.++..++
T Consensus 355 ~~~s~~~~k~~~ke~E~q~lr~~l~~~~~~s~~~elE~rl~~lt~~Li~KQ~~lE~l~~ek~al~lqlErl~~~l~ 430 (511)
T PF09787_consen 355 RQKSPLQLKLKEKESEIQKLRNQLSARASSSSWNELESRLTQLTESLIQKQTQLESLGSEKNALRLQLERLETQLK 430 (511)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHhccCCcHhHHHHHhhccHHHHHHHHHHHHHHhhhhhccccHHHHHHHHH
No 355
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=73.72 E-value=44 Score=26.65 Aligned_cols=41 Identities=17% Similarity=0.178 Sum_probs=21.4
Q ss_pred HhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 59 SHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSL 99 (321)
Q Consensus 59 s~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~ 99 (321)
+++..+++..+.....+......+..++..+..|..+++..
T Consensus 3 ~EL~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~ka 43 (96)
T PF08647_consen 3 TELVSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKA 43 (96)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555555555555544333
No 356
>PRK00106 hypothetical protein; Provisional
Probab=73.62 E-value=1.2e+02 Score=31.76 Aligned_cols=7 Identities=29% Similarity=0.553 Sum_probs=3.0
Q ss_pred HHHHHHH
Q 020809 10 SLFFALI 16 (321)
Q Consensus 10 ~~~~~~~ 16 (321)
..|.+|+
T Consensus 10 ~~~~~~~ 16 (535)
T PRK00106 10 SALIGLV 16 (535)
T ss_pred HHHHHHH
Confidence 3444443
No 357
>PRK10920 putative uroporphyrinogen III C-methyltransferase; Provisional
Probab=73.60 E-value=31 Score=34.67 Aligned_cols=82 Identities=16% Similarity=0.209 Sum_probs=0.0
Q ss_pred chhHHHHHHHHHHHHhhh-----hhhcccCCCCCCcccccCCCCchHHHHHHHHHHHHHHHHHh----HHHHHHhhhcHH
Q 020809 2 AASKLVIFSLFFALILTA-----ADVSIQGEDVPPLTASDAVDSSPLKIELDQLKSKIRSLESH----IDEKTQELKGKD 72 (321)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~el~qlk~ki~~Les~----i~e~~~eLk~kd 72 (321)
+-..|.++++++++.+|+ +.. ......+++..+..++..+... +..+...+...+
T Consensus 35 ~g~~l~~~aili~la~g~g~y~~~~q----------------q~~~~~~~~~~L~~ql~~~~~~~~~~~~~l~~~~~~~~ 98 (390)
T PRK10920 35 TGLVLSAVAIAIALAAGAGLYYHGKQ----------------QAQNQTATNDALANQLTALQKAQESQKQELEGILKQQA 98 (390)
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 73 EVVAQKEKAIQDKSERIVSLQKELSSL 99 (321)
Q Consensus 73 ~~I~q~ek~i~e~~~~I~~Lq~eI~~~ 99 (321)
..+.+++..+..+..++..|+..+..+
T Consensus 99 ~~l~~~e~~~~~l~~q~~~Lq~~~~~l 125 (390)
T PRK10920 99 KALDQANRQQAALAKQLDELQQKVATI 125 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
No 358
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=73.59 E-value=19 Score=28.48 Aligned_cols=19 Identities=26% Similarity=0.513 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHhHHHH
Q 020809 46 ELDQLKSKIRSLESHIDEK 64 (321)
Q Consensus 46 el~qlk~ki~~Les~i~e~ 64 (321)
+++++.++++.|.++++.+
T Consensus 25 kvdqLss~V~~L~~kvdql 43 (85)
T PRK09973 25 KVNQLASNVQTLNAKIARL 43 (85)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 5555555555554444444
No 359
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=73.58 E-value=1.4e+02 Score=32.49 Aligned_cols=83 Identities=13% Similarity=0.196 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 116 ARADELEKQIDNLKKESEKQQKEK-----------EALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVA 184 (321)
Q Consensus 116 ~RireL~k~Ie~Lk~ele~~~~kk-----------~~LEa~a~e~ekk~~el~~~le~Lek~~~Eqk~~l~elE~~lq~~ 184 (321)
.|++-|..+++.+-.++...+... ...+.+....-++....-...+.|..+....+.++.++.++.+.+
T Consensus 163 er~~kl~~~~qe~naeL~rarqreemneeh~~rlsdtvdErlqlhlkermaAle~kn~L~~e~~s~kk~l~~~~~~k~rl 242 (916)
T KOG0249|consen 163 ERTRKLEEQLEELNAELQRARQREKMNEEHNKRLSDTVDERLQLHLKERMAALEDKNRLEQELESVKKQLEEMRHDKDKL 242 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555544443322 122233333334444444555666666666777777777777776
Q ss_pred HHHHHHHHHHHhhh
Q 020809 185 EEEMMRAKFEATSR 198 (321)
Q Consensus 185 Eeei~kl~~ea~~~ 198 (321)
...+..+..+...+
T Consensus 243 ~~d~E~Lr~e~~qL 256 (916)
T KOG0249|consen 243 RTDIEDLRGELDQL 256 (916)
T ss_pred hhhHHHHHHHHHHH
Confidence 66666665444433
No 360
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=73.52 E-value=22 Score=26.26 Aligned_cols=18 Identities=28% Similarity=0.602 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 020809 116 ARADELEKQIDNLKKESE 133 (321)
Q Consensus 116 ~RireL~k~Ie~Lk~ele 133 (321)
.++.++..+++.+...++
T Consensus 46 ~kl~~~~~~~~~l~~~l~ 63 (66)
T PF10458_consen 46 EKLEELEEELEKLEEALE 63 (66)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444443
No 361
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=73.02 E-value=1.2e+02 Score=31.50 Aligned_cols=18 Identities=17% Similarity=0.326 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHhHH
Q 020809 45 IELDQLKSKIRSLESHID 62 (321)
Q Consensus 45 ~el~qlk~ki~~Les~i~ 62 (321)
.-+..+..++..|...+.
T Consensus 251 ~~i~~a~~~i~~L~~~l~ 268 (582)
T PF09731_consen 251 SLIAHAKERIDALQKELA 268 (582)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444444333
No 362
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=72.65 E-value=49 Score=30.66 Aligned_cols=18 Identities=17% Similarity=0.135 Sum_probs=8.1
Q ss_pred HHHHHHHHHHhhhhhhhh
Q 020809 186 EEMMRAKFEATSRSKELT 203 (321)
Q Consensus 186 eei~kl~~ea~~~a~ql~ 203 (321)
.+++++-.+.+.+.+++.
T Consensus 193 ~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 193 DEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred cHHHHHHHHHHHHHHHHh
Confidence 344444444444444443
No 363
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=72.23 E-value=77 Score=29.06 Aligned_cols=63 Identities=14% Similarity=0.192 Sum_probs=30.5
Q ss_pred CCchHHHHHHHHHHHHHHHHHhHHHHH--Hhh--hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 39 DSSPLKIELDQLKSKIRSLESHIDEKT--QEL--KGKDEVVAQKEKAIQDKSERIVSLQKELSSLQK 101 (321)
Q Consensus 39 ~~~~l~~el~qlk~ki~~Les~i~e~~--~eL--k~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~qk 101 (321)
+..+.+.-++.....+..+...+..+. .+- ..=-.....++..+..++..+..+..+|+.+..
T Consensus 98 d~~~w~~al~na~a~lehq~~R~~NLeLl~~~g~naW~~~n~~Le~~~~~le~~l~~~k~~ie~vN~ 164 (221)
T PF05700_consen 98 DVEAWKEALDNAYAQLEHQRLRLENLELLSKYGENAWLIHNEQLEAMLKRLEKELAKLKKEIEEVNR 164 (221)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555556666666655555554321 000 001123445555555555555555555555543
No 364
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=72.21 E-value=91 Score=29.63 Aligned_cols=20 Identities=15% Similarity=0.343 Sum_probs=10.6
Q ss_pred hHHHHHHHHHHHHHHHHHhH
Q 020809 42 PLKIELDQLKSKIRSLESHI 61 (321)
Q Consensus 42 ~l~~el~qlk~ki~~Les~i 61 (321)
..+.++..++.++..+...+
T Consensus 59 ~a~a~l~~a~a~~~~~~~~~ 78 (327)
T TIGR02971 59 VARTQLDEAKARLAQVRAGA 78 (327)
T ss_pred HHHHHHHHHHHHHHHHhccc
Confidence 34455655665555555443
No 365
>PLN02678 seryl-tRNA synthetase
Probab=72.06 E-value=30 Score=35.39 Aligned_cols=67 Identities=21% Similarity=0.294 Sum_probs=39.4
Q ss_pred HHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 65 TQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQ 136 (321)
Q Consensus 65 ~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~qk~~~~~~eeq~~~~~~RireL~k~Ie~Lk~ele~~~ 136 (321)
..+|-.+|.+-.++..+++.+..+++.+..+|......+ +....+.++++.|+++|..+..++....
T Consensus 32 id~il~ld~~~r~l~~~~e~lr~erN~~sk~I~~~k~~~-----~~~~~l~~~~~~Lk~ei~~le~~~~~~~ 98 (448)
T PLN02678 32 VDEVIALDKEWRQRQFELDSLRKEFNKLNKEVAKLKIAK-----EDATELIAETKELKKEITEKEAEVQEAK 98 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC-----CcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777777777788888888888777777776542211 1122344445555555554444444444
No 366
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=71.88 E-value=79 Score=28.76 Aligned_cols=14 Identities=21% Similarity=0.252 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHH
Q 020809 75 VAQKEKAIQDKSER 88 (321)
Q Consensus 75 I~q~ek~i~e~~~~ 88 (321)
...+|........+
T Consensus 83 ~~~AE~~Y~~F~~Q 96 (192)
T PF11180_consen 83 EARAEAIYRDFAQQ 96 (192)
T ss_pred hhhHHHHHHHHHHH
Confidence 34444444444433
No 367
>KOG2685 consensus Cystoskeletal protein Tektin [Cytoskeleton]
Probab=71.80 E-value=1.2e+02 Score=30.83 Aligned_cols=26 Identities=23% Similarity=0.282 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 170 QKSKIRKTERALKVAEEEMMRAKFEA 195 (321)
Q Consensus 170 qk~~l~elE~~lq~~Eeei~kl~~ea 195 (321)
.+.+|++.+..++.+..--.+++.+.
T Consensus 363 L~~kL~eA~~~l~~L~~~~~rLe~di 388 (421)
T KOG2685|consen 363 LKEKLDEAEDSLKLLVNHRARLERDI 388 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333344443333
No 368
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=71.62 E-value=1.3e+02 Score=31.26 Aligned_cols=9 Identities=44% Similarity=0.357 Sum_probs=3.6
Q ss_pred HHHHHHHHH
Q 020809 240 AIQKALEKK 248 (321)
Q Consensus 240 ~~~~~~~k~ 248 (321)
+.+.++++.
T Consensus 259 ia~~~l~~l 267 (514)
T TIGR03319 259 IARMALEKL 267 (514)
T ss_pred HHHHHHHHH
Confidence 334444443
No 369
>PRK04654 sec-independent translocase; Provisional
Probab=71.58 E-value=74 Score=29.39 Aligned_cols=19 Identities=11% Similarity=0.354 Sum_probs=14.1
Q ss_pred CchhHHHHHHHHHHHHhhh
Q 020809 1 MAASKLVIFSLFFALILTA 19 (321)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~ 19 (321)
++++-|++++++++||||.
T Consensus 4 IG~~ELLlI~VVALlV~GP 22 (214)
T PRK04654 4 IGVGELTLIAVVALVVLGP 22 (214)
T ss_pred ccHHHHHHHHHHHHHhcCc
Confidence 3677788877777778886
No 370
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=71.40 E-value=1.4e+02 Score=31.39 Aligned_cols=80 Identities=15% Similarity=0.231 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 020809 121 LEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSRSK 200 (321)
Q Consensus 121 L~k~Ie~Lk~ele~~~~kk~~LEa~a~e~ekk~~el~~~le~Lek~~~Eqk~~l~elE~~lq~~Eeei~kl~~ea~~~a~ 200 (321)
+++.|..+...+..+......-+..-..++..++.....+..+++........+..++++.-.+.+.+.++.....+.-+
T Consensus 352 ~e~eL~el~~~~~~i~~~~~~~~~~yS~lq~~l~~~~~~l~~i~~~q~~~~e~L~~LrkdEl~Are~l~~~~~~l~eikR 431 (570)
T COG4477 352 FEKELKELESVLDEILENIEAQEVAYSELQDNLEEIEKALTDIEDEQEKVQEHLTSLRKDELEARENLERLKSKLHEIKR 431 (570)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555566667777778888888888888888888888888888888888888666555543
No 371
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=71.09 E-value=15 Score=26.70 Aligned_cols=32 Identities=22% Similarity=0.361 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHhhhcHHHHH
Q 020809 44 KIELDQLKSKIRSLESHIDEKTQELKGKDEVV 75 (321)
Q Consensus 44 ~~el~qlk~ki~~Les~i~e~~~eLk~kd~~I 75 (321)
++++..+...+..++++.+++...+..+++.+
T Consensus 6 En~~~~~~~~i~tvk~en~~i~~~ve~i~env 37 (55)
T PF05377_consen 6 ENELPRIESSINTVKKENEEISESVEKIEENV 37 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444433333333333
No 372
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=70.85 E-value=48 Score=25.88 Aligned_cols=25 Identities=28% Similarity=0.365 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 75 VAQKEKAIQDKSERIVSLQKELSSL 99 (321)
Q Consensus 75 I~q~ek~i~e~~~~I~~Lq~eI~~~ 99 (321)
+++++..|+..-+.|.-|+-+|+.+
T Consensus 6 leqLE~KIqqAvdtI~LLqmEieEL 30 (79)
T PRK15422 6 FEKLEAKVQQAIDTITLLQMEIEEL 30 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666667777777777666
No 373
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=70.38 E-value=49 Score=25.76 Aligned_cols=73 Identities=23% Similarity=0.314 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 020809 121 LEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEAT 196 (321)
Q Consensus 121 L~k~Ie~Lk~ele~~~~kk~~LEa~a~e~ekk~~el~~~le~Lek~~~Eqk~~l~elE~~lq~~Eeei~kl~~ea~ 196 (321)
|+..++.++.+.+.+......+.....+.+.++....+.++.+...+-+.+..-..+. +..|++|.++..+..
T Consensus 2 l~elLd~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK---~~YEeEI~rLr~eLe 74 (79)
T PF08581_consen 2 LNELLDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMK---QQYEEEIARLRRELE 74 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 3455777777777777666666666666666555544445544444444444333333 456777777765554
No 374
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=70.25 E-value=63 Score=31.82 Aligned_cols=44 Identities=27% Similarity=0.276 Sum_probs=20.1
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 94 KELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKE 138 (321)
Q Consensus 94 ~eI~~~qk~~~~~~eeq~~~~~~RireL~k~Ie~Lk~ele~~~~k 138 (321)
.+.+++++ .-+++++.-.....+++++.+..+.-...+..++.+
T Consensus 4 eEW~eL~~-efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~Qkkr 47 (330)
T PF07851_consen 4 EEWEELQK-EFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKR 47 (330)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445543 223444444445555555544444444444444433
No 375
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=70.12 E-value=52 Score=26.97 Aligned_cols=7 Identities=29% Similarity=0.596 Sum_probs=3.1
Q ss_pred HHHHHHH
Q 020809 44 KIELDQL 50 (321)
Q Consensus 44 ~~el~ql 50 (321)
+.++++.
T Consensus 25 ~kef~ef 31 (102)
T PF01519_consen 25 HKEFDEF 31 (102)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3445533
No 376
>PF13514 AAA_27: AAA domain
Probab=70.06 E-value=2e+02 Score=32.68 Aligned_cols=32 Identities=25% Similarity=0.335 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 020809 171 KSKIRKTERALKVAEEEMMRAKFEATSRSKEL 202 (321)
Q Consensus 171 k~~l~elE~~lq~~Eeei~kl~~ea~~~a~ql 202 (321)
...+..++..+..++.++..+..+......++
T Consensus 895 ~~~l~~l~~~l~~l~~~~~~l~~~~~~~~~~l 926 (1111)
T PF13514_consen 895 EAELEELEEELEELEEELEELQEERAELEQEL 926 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444443333333333
No 377
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=70.03 E-value=1.1e+02 Score=29.74 Aligned_cols=26 Identities=23% Similarity=0.322 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 76 AQKEKAIQDKSERIVSLQKELSSLQK 101 (321)
Q Consensus 76 ~q~ek~i~e~~~~I~~Lq~eI~~~qk 101 (321)
.-++.++.....++...+..+...+.
T Consensus 173 ~fl~~ql~~~~~~l~~ae~~l~~fr~ 198 (362)
T TIGR01010 173 AFAENEVKEAEQRLNATKAELLKYQI 198 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444
No 378
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=69.85 E-value=1.1e+02 Score=29.68 Aligned_cols=19 Identities=21% Similarity=0.370 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHhHHHH
Q 020809 46 ELDQLKSKIRSLESHIDEK 64 (321)
Q Consensus 46 el~qlk~ki~~Les~i~e~ 64 (321)
-+.+++..+.+++.+-...
T Consensus 78 s~r~lk~~l~evEekyrkA 96 (302)
T PF09738_consen 78 SLRDLKDSLAEVEEKYRKA 96 (302)
T ss_pred cHHHHHHHHHHHHHHHHHH
Confidence 3445555555555444433
No 379
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=69.70 E-value=1.5e+02 Score=31.13 Aligned_cols=24 Identities=13% Similarity=0.224 Sum_probs=15.3
Q ss_pred chHHHHHHHHHHHHHHHHHhHHHH
Q 020809 41 SPLKIELDQLKSKIRSLESHIDEK 64 (321)
Q Consensus 41 ~~l~~el~qlk~ki~~Les~i~e~ 64 (321)
.++.++++.++.++....+.+..+
T Consensus 251 ~~id~~~~~L~~~l~~~~~~l~~L 274 (570)
T COG4477 251 VNIDSRLERLKEQLVENSELLTQL 274 (570)
T ss_pred ccHHHHHHHHHHHHHHHHhHHHHh
Confidence 456677777777776666555543
No 380
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=69.34 E-value=1.1e+02 Score=29.16 Aligned_cols=59 Identities=10% Similarity=0.227 Sum_probs=31.4
Q ss_pred CCchHHHHHHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 39 DSSPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELS 97 (321)
Q Consensus 39 ~~~~l~~el~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~ 97 (321)
+...++.++++++.++..++.++..+...+......|...+..+.....++...+.+++
T Consensus 74 d~~~~~~~l~~a~a~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~a~~~l~~a~~~~~ 132 (334)
T TIGR00998 74 DPTNAELALAKAEANLAALVRQTKQLEITVQQLQAKVESLKIKLEQAREKLLQAELDLR 132 (334)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 55566666777777777666666665554444444444444444444443333333333
No 381
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=69.17 E-value=43 Score=31.04 Aligned_cols=29 Identities=17% Similarity=0.360 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 148 EAEKKISDLSAKLEKLQKINDEQKSKIRK 176 (321)
Q Consensus 148 e~ekk~~el~~~le~Lek~~~Eqk~~l~e 176 (321)
+..+.++.++.....|.+..+.....++.
T Consensus 169 ~~~~~Le~~~~~~~al~Kq~e~~~~Eydr 197 (216)
T KOG1962|consen 169 KKQKKLEKAQKKVDALKKQSEGLQDEYDR 197 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccHHHH
Confidence 33333333344444444433333333333
No 382
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=69.08 E-value=1.5e+02 Score=30.91 Aligned_cols=33 Identities=9% Similarity=0.183 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 111 VDKAHARADELEKQIDNLKKESEKQQKEKEALE 143 (321)
Q Consensus 111 ~~~~~~RireL~k~Ie~Lk~ele~~~~kk~~LE 143 (321)
.+..+.|+..++....++..+++++......++
T Consensus 303 L~ele~RL~~l~~LkrKyg~s~e~l~~~~~~l~ 335 (563)
T TIGR00634 303 LNEIEERLAQIKRLKRKYGASVEEVLEYAEKIK 335 (563)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 333444444444443333333333333333333
No 383
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.61 E-value=1.6e+02 Score=31.13 Aligned_cols=56 Identities=16% Similarity=0.261 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHhhhcHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 44 KIELDQLKSKIRSLESHIDEKTQELKGKD-------EVVAQKEKAIQDKSERIVSLQKELSSL 99 (321)
Q Consensus 44 ~~el~qlk~ki~~Les~i~e~~~eLk~kd-------~~I~q~ek~i~e~~~~I~~Lq~eI~~~ 99 (321)
.++++.++..|..|....++.+.++-... ++=..+++...+++..++.+..+|+.+
T Consensus 7 eq~ve~lr~eierLT~el~q~t~e~~qaAeyGL~lLeeK~~Lkqq~eEleaeyd~~R~Eldqt 69 (772)
T KOG0999|consen 7 EQEVEKLRQEIERLTEELEQTTEEKIQAAEYGLELLEEKEDLKQQLEELEAEYDLARTELDQT 69 (772)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666666666666665554433211 111234455555555555555555555
No 384
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=68.52 E-value=38 Score=27.56 Aligned_cols=51 Identities=10% Similarity=0.255 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhhhcH--HHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 46 ELDQLKSKIRSLESHIDEKTQELKGK--DEVVAQKEKAIQDKSERIVSLQKEL 96 (321)
Q Consensus 46 el~qlk~ki~~Les~i~e~~~eLk~k--d~~I~q~ek~i~e~~~~I~~Lq~eI 96 (321)
.++.+..++......++.+..+++.+ ...+..++..|.+++.++..+...|
T Consensus 36 ~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l 88 (106)
T PF10805_consen 36 DIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARL 88 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 45555555554444444444444444 3334444433333333333333333
No 385
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=68.37 E-value=9 Score=39.51 Aligned_cols=19 Identities=21% Similarity=0.520 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHhHHHH
Q 020809 46 ELDQLKSKIRSLESHIDEK 64 (321)
Q Consensus 46 el~qlk~ki~~Les~i~e~ 64 (321)
+|++|++++++|+.+++++
T Consensus 32 kie~L~kql~~Lk~q~~~l 50 (489)
T PF11853_consen 32 KIEALKKQLEELKAQQDDL 50 (489)
T ss_pred HHHHHHHHHHHHHHhhccc
Confidence 5555555555555555533
No 386
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=68.19 E-value=88 Score=30.84 Aligned_cols=58 Identities=19% Similarity=0.312 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 44 KIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQK 101 (321)
Q Consensus 44 ~~el~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~qk 101 (321)
..+.+++...-.+|+..-....+.+.+...-.+..-+.|..-...+..|...+...++
T Consensus 3 ~eEW~eL~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~sLk~~~~ 60 (330)
T PF07851_consen 3 EEEWEELQKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELKKSLKRCKK 60 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3455666666666666666666666666666666666655555555555555555533
No 387
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=67.64 E-value=1.2e+02 Score=29.22 Aligned_cols=29 Identities=3% Similarity=0.095 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHhHHHHHHhhhcHHHHHHH
Q 020809 49 QLKSKIRSLESHIDEKTQELKGKDEVVAQ 77 (321)
Q Consensus 49 qlk~ki~~Les~i~e~~~eLk~kd~~I~q 77 (321)
+.+..+.+++..+.....++......+..
T Consensus 83 ~~~~~l~~a~a~l~~a~a~l~~~~~~~~~ 111 (346)
T PRK10476 83 PYELTVAQAQADLALADAQIMTTQRSVDA 111 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666655555544444333
No 388
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=67.54 E-value=2.1e+02 Score=31.95 Aligned_cols=96 Identities=25% Similarity=0.216 Sum_probs=53.5
Q ss_pred chHHHHHHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-h--HHHHHHHHHHHHH
Q 020809 41 SPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKE-T--LNAAEQVDKAHAR 117 (321)
Q Consensus 41 ~~l~~el~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~qk~~-~--~~~eeq~~~~~~R 117 (321)
..+..++.++..++...+........+.......-.+.+.....+..++..++.+.+.+-++. . .-.....+....+
T Consensus 470 ~~ls~el~el~k~l~~Ke~l~rr~~~~~~~~~~~~~~~e~~~~~le~e~~~le~E~~~l~~el~~~~~~~~kl~eer~qk 549 (913)
T KOG0244|consen 470 GSLSGELSELEKRLAEKEPLTRRKAYEKAEKSKAKEQYESDSGTLEAEKSPLESERSRLRNELNVFNRLAAKLGEERVQK 549 (913)
T ss_pred hhhhHHHHHHHhhhccccHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHhcccccccHHHHHHHHhhhHHHHHhhhHHHHH
Confidence 335556666666666666666666655555555555555555555555555555555554431 0 0122233344456
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 020809 118 ADELEKQIDNLKKESEKQQ 136 (321)
Q Consensus 118 ireL~k~Ie~Lk~ele~~~ 136 (321)
+.+|+.++..|+.-+..+.
T Consensus 550 lk~le~q~s~lkk~l~~~~ 568 (913)
T KOG0244|consen 550 LKSLETQISLLKKKLSSQR 568 (913)
T ss_pred HHHHHHHHHHHHHhhHHHH
Confidence 6667777777766665554
No 389
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=67.48 E-value=1.5e+02 Score=30.23 Aligned_cols=144 Identities=19% Similarity=0.259 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 020809 45 IELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQ 124 (321)
Q Consensus 45 ~el~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~qk~~~~~~eeq~~~~~~RireL~k~ 124 (321)
.++..++..+..|.+.-..-..++...=..|...-+.+....-....-.+...-. . +...+....+.+-.||.+|+..
T Consensus 151 ~Ev~~LRreLavLRQl~~~~~~~~~~~i~~i~~ki~~~k~~s~~~~~~~~R~~~~-~-~k~~L~~~sd~Ll~kVdDLQD~ 228 (424)
T PF03915_consen 151 KEVQSLRRELAVLRQLYSEFQSEVKESISSIREKIKKVKSASTNASGDSNRAYME-S-GKKKLSEESDRLLTKVDDLQDL 228 (424)
T ss_dssp -------------------------------------------------HHHHHH-H-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHH-H-HHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 125 IDNLKKESEKQQKEK-----EALEARAIEAEKKISDLSAKL------------EKLQKINDEQKSKIRKTERALKVAEEE 187 (321)
Q Consensus 125 Ie~Lk~ele~~~~kk-----~~LEa~a~e~ekk~~el~~~l------------e~Lek~~~Eqk~~l~elE~~lq~~Eee 187 (321)
|+.|+.+.-.+.-+- ..+-.....+.+.+..+..-+ ..|+.+..||+-.-.+ +.-...+.+.
T Consensus 229 VE~LRkDV~~RgvRp~~~qle~v~kdi~~a~~~L~~m~~~i~~~kp~WkKiWE~EL~~V~eEQqfL~~Q-edL~~DL~eD 307 (424)
T PF03915_consen 229 VEDLRKDVVQRGVRPSPKQLETVAKDISRASKELKKMKEYIKTEKPIWKKIWESELQKVCEEQQFLKLQ-EDLLSDLKED 307 (424)
T ss_dssp HHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q ss_pred HHHH
Q 020809 188 MMRA 191 (321)
Q Consensus 188 i~kl 191 (321)
+.++
T Consensus 308 l~k~ 311 (424)
T PF03915_consen 308 LKKA 311 (424)
T ss_dssp HHHH
T ss_pred HHHH
No 390
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=67.46 E-value=1.4e+02 Score=29.72 Aligned_cols=129 Identities=18% Similarity=0.250 Sum_probs=67.5
Q ss_pred HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 61 IDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKK------ETLNAAEQVDKAHARADELEKQIDNLKKESEK 134 (321)
Q Consensus 61 i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~qk~------~~~~~eeq~~~~~~RireL~k~Ie~Lk~ele~ 134 (321)
+-+.+.-|+..-+.+.+-+.+..++..+-++|.+++-..+.- ....+|.-+-.+..+-..|+-+++.+..+..+
T Consensus 80 ~~e~~eglr~i~es~~e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~E 159 (401)
T PF06785_consen 80 ITEKDEGLRKIRESVEERQQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGE 159 (401)
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhH
Confidence 344445566666667777777777776666666666554321 23445555555555555577777777777655
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 135 QQKEKEALEARAIEAEKKISDLSAK----LEKLQKINDEQKSKIRKTERALKVAEEEMM 189 (321)
Q Consensus 135 ~~~kk~~LEa~a~e~ekk~~el~~~----le~Lek~~~Eqk~~l~elE~~lq~~Eeei~ 189 (321)
...+...|-..+.++-....+++.. ...-.......+..|.+++..-+.+--++.
T Consensus 160 keeesq~LnrELaE~layqq~L~~eyQatf~eq~~ml~kRQ~yI~~LEsKVqDLm~Eir 218 (401)
T PF06785_consen 160 KEEESQTLNRELAEALAYQQELNDEYQATFVEQHSMLDKRQAYIGKLESKVQDLMYEIR 218 (401)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555544444443333333322 222233333444455555555444433333
No 391
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=67.44 E-value=1.1e+02 Score=28.46 Aligned_cols=54 Identities=22% Similarity=0.475 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 020809 109 EQVDKAHARADELEKQIDNLKKESEKQQKEK-EALEARAIEAEKKISDLSAKLEK 162 (321)
Q Consensus 109 eq~~~~~~RireL~k~Ie~Lk~ele~~~~kk-~~LEa~a~e~ekk~~el~~~le~ 162 (321)
.+.+.+..++..|...+..|...+...+.+. ..++.....+...+.++...++.
T Consensus 85 ~~~~~~~~~l~~L~~ri~~L~~~i~ee~~~r~~~ie~~~~~l~~~l~~l~~~~~~ 139 (247)
T PF06705_consen 85 EKQEQLQSRLDSLNDRIEALEEEIQEEKEERPQDIEELNQELVRELNELQEAFEN 139 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444445555555554444444333 33444445555544444444443
No 392
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=67.12 E-value=1.5e+02 Score=30.21 Aligned_cols=72 Identities=26% Similarity=0.381 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 120 ELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRA 191 (321)
Q Consensus 120 eL~k~Ie~Lk~ele~~~~kk~~LEa~a~e~ekk~~el~~~le~Lek~~~Eqk~~l~elE~~lq~~Eeei~kl 191 (321)
++..+.+.++.+=+.+-+.+..++.+..++...+.+++.+...+.....++|+.........-..+.++..+
T Consensus 180 ~~~~e~~~l~~eE~~L~q~lk~le~~~~~l~~~l~e~~~~~~~~~e~~~~~~~ey~~~~~q~~~~~del~Sl 251 (447)
T KOG2751|consen 180 DLLKELKNLKEEEERLLQQLEELEKEEAELDHQLKELEFKAERLNEEEDQYWREYNNFQRQLIEHQDELDSL 251 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHH
Confidence 355555566655556666666677777777777777777777777777777777766555554444444433
No 393
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=67.04 E-value=71 Score=26.32 Aligned_cols=17 Identities=24% Similarity=0.473 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHhHHH
Q 020809 47 LDQLKSKIRSLESHIDE 63 (321)
Q Consensus 47 l~qlk~ki~~Les~i~e 63 (321)
+++++..+..+..+++.
T Consensus 8 ~~~l~~~i~~l~~~~~~ 24 (129)
T cd00584 8 LQVLQQEIEELQQELAR 24 (129)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 394
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=66.98 E-value=1.4e+02 Score=29.65 Aligned_cols=55 Identities=16% Similarity=0.186 Sum_probs=25.8
Q ss_pred CchHHHHHHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 40 SSPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQK 94 (321)
Q Consensus 40 ~~~l~~el~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~ 94 (321)
+-.+..-+++-+..-.+|+++-+.+..+|--..+-+......++.++.-|..+..
T Consensus 87 lr~i~es~~e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~E 141 (401)
T PF06785_consen 87 LRKIRESVEERQQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLRE 141 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 3334444444455555555555555555544444444444444444444444333
No 395
>PRK00106 hypothetical protein; Provisional
Probab=66.92 E-value=1.7e+02 Score=30.72 Aligned_cols=13 Identities=15% Similarity=0.291 Sum_probs=5.7
Q ss_pred ccchhhHHHHhHh
Q 020809 280 NVEPHVQTLKTKT 292 (321)
Q Consensus 280 ~~~p~~q~~~~~~ 292 (321)
+.+|+=-.+.+.+
T Consensus 272 ~fdpvRReiAr~~ 284 (535)
T PRK00106 272 GFDPIRREIARMT 284 (535)
T ss_pred CCChHHHHHHHHH
Confidence 3344444444444
No 396
>PHA03332 membrane glycoprotein; Provisional
Probab=66.60 E-value=2e+02 Score=32.87 Aligned_cols=32 Identities=16% Similarity=0.248 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhhhcHHHHHHH
Q 020809 46 ELDQLKSKIRSLESHIDEKTQELKGKDEVVAQ 77 (321)
Q Consensus 46 el~qlk~ki~~Les~i~e~~~eLk~kd~~I~q 77 (321)
++=+.-..|+.+.+.|...+..+..+.+.+.+
T Consensus 885 ~llqnaaaia~mksaIg~tNaAV~~lsDai~k 916 (1328)
T PHA03332 885 QLLQATAATAEMASKIGGLNARVDKTSDVITK 916 (1328)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555444444444443333
No 397
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=66.30 E-value=2.3e+02 Score=32.04 Aligned_cols=153 Identities=15% Similarity=0.216 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHH---hHHHHHHhhhcHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 020809 47 LDQLKSKIRSLES---HIDEKTQELKGKDEVVAQK--------------EKAIQDKSERIVSLQKELSSLQKKETLNAAE 109 (321)
Q Consensus 47 l~qlk~ki~~Les---~i~e~~~eLk~kd~~I~q~--------------ek~i~e~~~~I~~Lq~eI~~~qk~~~~~~ee 109 (321)
++.+......++. .+..+..++......+... +..+......+..+++.+..+.. .......
T Consensus 667 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~ 745 (1047)
T PRK10246 667 LATRQQEAQSWQQRQNELTALQNRIQQLTPLLETLPQSDDLPHSEETVALDNWRQVHEQCLSLHSQLQTLQQ-QDVLEAQ 745 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Q ss_pred HHHHHHHHHHH-------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHH
Q 020809 110 QVDKAHARADE-------------------------LEKQIDNLKKESEKQQKEKEALEARAIE----------AEKKIS 154 (321)
Q Consensus 110 q~~~~~~Rire-------------------------L~k~Ie~Lk~ele~~~~kk~~LEa~a~e----------~ekk~~ 154 (321)
....+...+.. |...|..+...+.........++..... ...-+.
T Consensus 746 ~~~~~~~~~~~~L~~~~f~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 825 (1047)
T PRK10246 746 RLQKAQAQFDTALQASVFDDQQAFLAALLDEETLTQLEQLKQNLENQRQQAQTLVTQTAQALAQHQQHRPDGLDLTVTVE 825 (1047)
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 020809 155 DLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSRSK 200 (321)
Q Consensus 155 el~~~le~Lek~~~Eqk~~l~elE~~lq~~Eeei~kl~~ea~~~a~ 200 (321)
++...+..++.........+..+...+...+.-..++..-...+..
T Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 871 (1047)
T PRK10246 826 QIQQELAQLAQQLRENTTRQGEIRQQLKQDADNRQQQQALMQQIAQ 871 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 398
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=66.14 E-value=1.3e+02 Score=29.18 Aligned_cols=50 Identities=18% Similarity=0.308 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 44 KIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQ 93 (321)
Q Consensus 44 ~~el~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq 93 (321)
.++|...+++.+.|+...-....-|+++...+...+..+...+.++..++
T Consensus 150 sQqLskaesK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e 199 (305)
T PF14915_consen 150 SQQLSKAESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEIE 199 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555544444444444444444444444443333
No 399
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=65.98 E-value=25 Score=28.69 Aligned_cols=10 Identities=20% Similarity=0.408 Sum_probs=4.1
Q ss_pred CchhHHHHHH
Q 020809 1 MAASKLVIFS 10 (321)
Q Consensus 1 ~~~~~~~~~~ 10 (321)
|++.-+++++
T Consensus 1 m~~~~~vll~ 10 (105)
T PRK00888 1 MRLLTLLLLA 10 (105)
T ss_pred CcHHHHHHHH
Confidence 4444344333
No 400
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=65.85 E-value=1.4e+02 Score=29.21 Aligned_cols=14 Identities=29% Similarity=0.416 Sum_probs=4.9
Q ss_pred hhhhhhccCchhHH
Q 020809 201 ELTEVHSAWLPPWL 214 (321)
Q Consensus 201 ql~e~~g~~l~Pwl 214 (321)
.|.+..+-=-||-+
T Consensus 105 di~Eiks~~~PP~~ 118 (344)
T PF12777_consen 105 DISEIKSYANPPEA 118 (344)
T ss_dssp HHHHHHHSSS--HH
T ss_pred HHHHHHhhCCCcHH
Confidence 34443333345554
No 401
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=65.64 E-value=47 Score=31.38 Aligned_cols=30 Identities=23% Similarity=0.419 Sum_probs=14.8
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHhhhcH
Q 020809 42 PLKIELDQLKSKIRSLESHIDEKTQELKGK 71 (321)
Q Consensus 42 ~l~~el~qlk~ki~~Les~i~e~~~eLk~k 71 (321)
.+..++..++.+...|.+++...++.++..
T Consensus 54 ~L~~e~~s~Q~~~~~L~~ev~~~~~~~~s~ 83 (247)
T COG3879 54 DLVKELRSLQKKVNTLAAEVEDLENKLDSV 83 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555444433333
No 402
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=65.61 E-value=62 Score=25.10 Aligned_cols=31 Identities=23% Similarity=0.422 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhhhcHHHHHH
Q 020809 46 ELDQLKSKIRSLESHIDEKTQELKGKDEVVA 76 (321)
Q Consensus 46 el~qlk~ki~~Les~i~e~~~eLk~kd~~I~ 76 (321)
.+++++.++.++......+...|.....++.
T Consensus 15 ~l~~~~~~l~el~~sQ~~L~~~i~~~~~~L~ 45 (92)
T PF14712_consen 15 DLDRLDQQLQELRQSQEELLQQIDRLNEKLK 45 (92)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555444444444443
No 403
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=65.61 E-value=67 Score=25.49 Aligned_cols=42 Identities=14% Similarity=0.260 Sum_probs=22.3
Q ss_pred chHHHHHHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHH
Q 020809 41 SPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAI 82 (321)
Q Consensus 41 ~~l~~el~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i 82 (321)
+.+.++++.+++++.++.+.+......+..-.++-+.+...|
T Consensus 27 dqLss~V~~L~~kvdql~~dv~~a~aaa~aAk~EA~RAN~Ri 68 (85)
T PRK09973 27 NQLASNVQTLNAKIARLEQDMKALRPQIYAAKSEANRANTRL 68 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445556666666666666666655544444444444444443
No 404
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=65.44 E-value=1.6e+02 Score=29.96 Aligned_cols=56 Identities=23% Similarity=0.281 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 126 DNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERAL 181 (321)
Q Consensus 126 e~Lk~ele~~~~kk~~LEa~a~e~ekk~~el~~~le~Lek~~~Eqk~~l~elE~~l 181 (321)
++|+.-+++.+--+....+...+++.+..-+..+++.++-+..+...-+..+....
T Consensus 244 eKL~~~leemk~~l~k~k~~~~~l~~K~~iL~ekv~~~qti~~e~~~~lk~i~~~~ 299 (446)
T KOG4438|consen 244 EKLKEALEEMKDLLQKEKSAMVELQEKAKILEEKVTNLQTIEKELKALLKKISSDG 299 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHhh
Confidence 34444444444444444444445555555566666666666666665555555444
No 405
>PF04375 HemX: HemX; InterPro: IPR007470 The majority of proteins in this family are annotated as uroporphyrin-III C-methyltransferase (2.1.1.107 from EC) []; however, there is no direct evidence to support this annotation for these proteins, which come from mainly pathogenic Gram-negative organisms. There is some evidence to suggest that the proteins are membrane anchored as they have a predicted N-terminal signal peptide and transmembrane domain and may be involved in haem transport [].
Probab=65.43 E-value=1.5e+02 Score=29.42 Aligned_cols=24 Identities=25% Similarity=0.583 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhhh
Q 020809 46 ELDQLKSKIRSLESHIDEKTQELK 69 (321)
Q Consensus 46 el~qlk~ki~~Les~i~e~~~eLk 69 (321)
+...++.++..|+.++....+.+.
T Consensus 54 q~~~~~~~~~~L~~ql~~~~~~~~ 77 (372)
T PF04375_consen 54 QLQQLQQQLQALQQQLQQLQQQLE 77 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444444444444444433333
No 406
>PRK01203 prefoldin subunit alpha; Provisional
Probab=65.37 E-value=87 Score=26.74 Aligned_cols=32 Identities=9% Similarity=0.316 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 106 NAAEQVDKAHARADELEKQIDNLKKESEKQQK 137 (321)
Q Consensus 106 ~~eeq~~~~~~RireL~k~Ie~Lk~ele~~~~ 137 (321)
..+++++.+++++.+|+..|....+.++.+..
T Consensus 84 ~~e~kie~L~~~ie~Le~~i~~K~~~l~~i~~ 115 (130)
T PRK01203 84 ERERTIERLKENLEDLKDSIQKLNDQRKTLVD 115 (130)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555554444444443
No 407
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=65.27 E-value=35 Score=26.41 Aligned_cols=13 Identities=23% Similarity=0.565 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHH
Q 020809 87 ERIVSLQKELSSL 99 (321)
Q Consensus 87 ~~I~~Lq~eI~~~ 99 (321)
.++..|+..++.+
T Consensus 18 ~KVdaLq~~V~~l 30 (75)
T PF05531_consen 18 DKVDALQTQVDDL 30 (75)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 408
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=65.22 E-value=2e+02 Score=30.74 Aligned_cols=98 Identities=15% Similarity=0.229 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 80 KAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAK 159 (321)
Q Consensus 80 k~i~e~~~~I~~Lq~eI~~~qk~~~~~~eeq~~~~~~RireL~k~Ie~Lk~ele~~~~kk~~LEa~a~e~ekk~~el~~~ 159 (321)
....++..+-..|..++...+. . ..+++.||++|+.+|..++.+...-+++-...|..--=+..+...-...
T Consensus 329 akVDeL~~E~~vLrgElea~kq-a-------k~Klee~i~elEEElk~~k~ea~~ar~~~~~~e~ddiPmAqRkRFTRvE 400 (832)
T KOG2077|consen 329 AKVDELTCEKDVLRGELEAVKQ-A-------KLKLEEKIRELEEELKKAKAEAEDARQKAKDDEDDDIPMAQRKRFTRVE 400 (832)
T ss_pred HHHHhhccHHHHHhhHHHHHHH-H-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHhhhHHHH
Confidence 3444444555556666655533 2 2345559999999999988888777655433333222222333333344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 160 LEKLQKINDEQKSKIRKTERALKVAE 185 (321)
Q Consensus 160 le~Lek~~~Eqk~~l~elE~~lq~~E 185 (321)
+...-=...+++-+|-+|+.+..=.|
T Consensus 401 MaRVLMeRNqYKErLMELqEavrWTE 426 (832)
T KOG2077|consen 401 MARVLMERNQYKERLMELQEAVRWTE 426 (832)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhHHH
Confidence 44444445667777877777665554
No 409
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=64.91 E-value=1.7e+02 Score=29.86 Aligned_cols=46 Identities=30% Similarity=0.290 Sum_probs=31.5
Q ss_pred HHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 56 SLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQK 101 (321)
Q Consensus 56 ~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~qk 101 (321)
.+-+...+..+.+-.++.+|++.++....++.+...+..+-....+
T Consensus 3 ~~~s~~s~~dqr~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a 48 (459)
T KOG0288|consen 3 PLYSQKSENDQRLIDLNTELAQCEKAQSRLSAQLVILRAESRAIKA 48 (459)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666667777788888888887777777777666655533
No 410
>PRK01919 tatB sec-independent translocase; Provisional
Probab=64.39 E-value=59 Score=28.99 Aligned_cols=18 Identities=17% Similarity=0.340 Sum_probs=13.4
Q ss_pred chhHHHHHHHHHHHHhhh
Q 020809 2 AASKLVIFSLFFALILTA 19 (321)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~ 19 (321)
+++-|+++++++++|+|.
T Consensus 5 G~~ElliI~VVALiV~GP 22 (169)
T PRK01919 5 GLSKLALIGVVALVVIGP 22 (169)
T ss_pred cHHHHHHHHHHHHheeCc
Confidence 677888877776667876
No 411
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=64.21 E-value=1.9e+02 Score=30.18 Aligned_cols=14 Identities=7% Similarity=0.297 Sum_probs=6.8
Q ss_pred ccchhhHHHHhHhH
Q 020809 280 NVEPHVQTLKTKTI 293 (321)
Q Consensus 280 ~~~p~~q~~~~~~~ 293 (321)
+.+|+=-.+.+.+.
T Consensus 251 ~fdp~rreia~~~l 264 (514)
T TIGR03319 251 GFDPVRREIARMAL 264 (514)
T ss_pred CCchHHHHHHHHHH
Confidence 44555555544444
No 412
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=63.56 E-value=1.4e+02 Score=28.51 Aligned_cols=19 Identities=42% Similarity=0.441 Sum_probs=7.8
Q ss_pred HHHHHHHHHHhHHHHHHhh
Q 020809 50 LKSKIRSLESHIDEKTQEL 68 (321)
Q Consensus 50 lk~ki~~Les~i~e~~~eL 68 (321)
+.....+....|....++.
T Consensus 146 ~~~~~~ekd~~i~~~~~~~ 164 (264)
T PF07246_consen 146 LKKEAEEKDQLIKEKTQER 164 (264)
T ss_pred HHHHHHHHHHHHHHHhhch
Confidence 4444444444444433333
No 413
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=63.42 E-value=1.1e+02 Score=27.23 Aligned_cols=31 Identities=16% Similarity=0.336 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 154 SDLSAKLEKLQKINDEQKSKIRKTERALKVA 184 (321)
Q Consensus 154 ~el~~~le~Lek~~~Eqk~~l~elE~~lq~~ 184 (321)
..+......+.....-....|.+++..+..+
T Consensus 145 ~~l~~~~~~l~~~l~~~~g~I~~L~~~I~~~ 175 (184)
T PF05791_consen 145 RNLKTDVDELQSILAGENGDIPQLQKQIENL 175 (184)
T ss_dssp HHHHHHHHHHHHHHHHTT--HHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHhcccCCHHHHHHHHHHH
Confidence 3334444444444444444444444443333
No 414
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=63.36 E-value=66 Score=24.67 Aligned_cols=24 Identities=29% Similarity=0.379 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 76 AQKEKAIQDKSERIVSLQKELSSL 99 (321)
Q Consensus 76 ~q~ek~i~e~~~~I~~Lq~eI~~~ 99 (321)
++++..|..--+.|.-|+-+|+.+
T Consensus 7 ekLE~KiqqAvdTI~LLQmEieEL 30 (79)
T COG3074 7 EKLEAKVQQAIDTITLLQMEIEEL 30 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444445666666666666
No 415
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=63.28 E-value=1.3e+02 Score=31.78 Aligned_cols=8 Identities=13% Similarity=0.293 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 020809 114 AHARADEL 121 (321)
Q Consensus 114 ~~~RireL 121 (321)
++.|+.+|
T Consensus 196 yk~~v~~i 203 (555)
T TIGR03545 196 YKKRLEAI 203 (555)
T ss_pred HHHHHHHH
Confidence 33344433
No 416
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=63.01 E-value=1e+02 Score=26.66 Aligned_cols=100 Identities=8% Similarity=0.170 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 020809 42 PLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADEL 121 (321)
Q Consensus 42 ~l~~el~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~qk~~~~~~eeq~~~~~~RireL 121 (321)
.+...|++|+..+.+++..-.+...-++.....+...+.....-..-+.....++...- .-.++.....--.+|+.|
T Consensus 33 ~v~~~i~~L~~~L~~~~n~t~~~~~~v~~i~~~~~~~q~~~~~n~~i~~~~s~~l~~~~---~~~~e~~i~~~~~~I~~L 109 (146)
T PF08702_consen 33 DVDKDIQELENLLDQISNSTSEAFEYVKNIKDSLRPRQKQAKPNDNIYNQYSKSLRKMI---IYILETKIINQPSNIRVL 109 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccccccCCcccHHHHHHHHHHHHH---HHHHHHHHhhhHhHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 020809 122 EKQIDNLKKESEKQQKEKEALEA 144 (321)
Q Consensus 122 ~k~Ie~Lk~ele~~~~kk~~LEa 144 (321)
+..|+.....+...+..+..++.
T Consensus 110 q~~~~~~~~ki~~Le~~i~~~~~ 132 (146)
T PF08702_consen 110 QNILRSNRQKIQRLEQDIDQQER 132 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
No 417
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=62.81 E-value=44 Score=33.46 Aligned_cols=11 Identities=9% Similarity=-0.022 Sum_probs=4.4
Q ss_pred HHhhhhhhhhh
Q 020809 259 VETIKAKWIPA 269 (321)
Q Consensus 259 ~~~~~~k~~p~ 269 (321)
|-.||+.+.|.
T Consensus 371 l~~FK~~F~g~ 381 (406)
T PF02388_consen 371 LYKFKKGFGGQ 381 (406)
T ss_dssp HHHHHHCCT-C
T ss_pred HHHHhhcCCCc
Confidence 33444444443
No 418
>PRK04098 sec-independent translocase; Provisional
Probab=62.50 E-value=5.8 Score=34.95 Aligned_cols=19 Identities=11% Similarity=0.235 Sum_probs=14.0
Q ss_pred CchhHHHHHHHHHHHHhhh
Q 020809 1 MAASKLVIFSLFFALILTA 19 (321)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~ 19 (321)
|+++-|++++++++++||+
T Consensus 4 iG~~EllvI~vVaLlvfGP 22 (158)
T PRK04098 4 MGFFEILVILVVAIIFLGP 22 (158)
T ss_pred CcHHHHHHHHHHHHhhcCc
Confidence 4677777777776678887
No 419
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=62.29 E-value=53 Score=24.24 Aligned_cols=17 Identities=24% Similarity=0.532 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHhHHHH
Q 020809 48 DQLKSKIRSLESHIDEK 64 (321)
Q Consensus 48 ~qlk~ki~~Les~i~e~ 64 (321)
..+..++..++..++.+
T Consensus 7 ~rL~Kel~kl~~~i~~~ 23 (66)
T PF10458_consen 7 ERLEKELEKLEKEIERL 23 (66)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 420
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=62.01 E-value=1.9e+02 Score=29.55 Aligned_cols=71 Identities=15% Similarity=0.252 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 121 LEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRA 191 (321)
Q Consensus 121 L~k~Ie~Lk~ele~~~~kk~~LEa~a~e~ekk~~el~~~le~Lek~~~Eqk~~l~elE~~lq~~Eeei~kl 191 (321)
|-.++..+.++-.+..-.+.+++.++.++..+...+-..........-+.+..++.++......+.++.++
T Consensus 195 L~q~lk~le~~~~~l~~~l~e~~~~~~~~~e~~~~~~~ey~~~~~q~~~~~del~Sle~q~~~s~~qldkL 265 (447)
T KOG2751|consen 195 LLQQLEELEKEEAELDHQLKELEFKAERLNEEEDQYWREYNNFQRQLIEHQDELDSLEAQIEYSQAQLDKL 265 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHH
Confidence 33345555555555555556666666666666666666666666666666666777776666666666655
No 421
>PLN02320 seryl-tRNA synthetase
Probab=61.67 E-value=66 Score=33.46 Aligned_cols=58 Identities=10% Similarity=0.091 Sum_probs=37.3
Q ss_pred CCchHHHHHHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 39 DSSPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSS 98 (321)
Q Consensus 39 ~~~~l~~el~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~ 98 (321)
|..-++.+.+..+..+..-....+ ..+|-.+|....++..+++.+..+.+.+-++|..
T Consensus 68 D~k~ir~n~~~v~~~l~~R~~~~~--vd~l~~ld~~~r~~~~~~~~lr~ern~~sk~i~~ 125 (502)
T PLN02320 68 DFKWIRDNKEAVAINIRNRNSNAN--LELVLELYENMLALQKEVERLRAERNAVANKMKG 125 (502)
T ss_pred CHHHHHhCHHHHHHHHHhcCCCcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 555666666666666554332222 4667777777777777777777777777777754
No 422
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=61.60 E-value=2.4e+02 Score=30.52 Aligned_cols=11 Identities=18% Similarity=0.283 Sum_probs=5.3
Q ss_pred chhHHHHHHHH
Q 020809 210 LPPWLAVHLLQ 220 (321)
Q Consensus 210 l~Pwla~~~~~ 220 (321)
.-|++......
T Consensus 322 vRP~~~~e~~~ 332 (670)
T KOG0239|consen 322 VRPLLPSEKQR 332 (670)
T ss_pred ecCCCcccccc
Confidence 44555544443
No 423
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=61.13 E-value=1.3e+02 Score=27.23 Aligned_cols=53 Identities=25% Similarity=0.334 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 139 KEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRA 191 (321)
Q Consensus 139 k~~LEa~a~e~ekk~~el~~~le~Lek~~~Eqk~~l~elE~~lq~~Eeei~kl 191 (321)
...++....+++.++.+++.....+...+..-...|..++.....+.+.+...
T Consensus 126 ~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~ 178 (190)
T PF05266_consen 126 LKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENA 178 (190)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555555555555555555554444
No 424
>PF03978 Borrelia_REV: Borrelia burgdorferi REV protein; InterPro: IPR007126 This family consists of several REV proteins from Borrelia burgdorferi (Lyme disease spirochete) and Borrelia garinii. The function of REV is unknown although it has been shown that the gene is induced during the ingesting of host blood suggesting a role in the metabolic activation of borreliae to adapt to physiological stimuli [].
Probab=61.10 E-value=1.2e+02 Score=26.80 Aligned_cols=17 Identities=29% Similarity=0.483 Sum_probs=11.9
Q ss_pred hhHHHHHHHHHHHHhhh
Q 020809 3 ASKLVIFSLFFALILTA 19 (321)
Q Consensus 3 ~~~~~~~~~~~~~~~~~ 19 (321)
|.+||+++++|++.|.+
T Consensus 6 i~klff~~~lfvmaCka 22 (160)
T PF03978_consen 6 IVKLFFISMLFVMACKA 22 (160)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 67888888776665544
No 425
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=60.96 E-value=82 Score=24.93 Aligned_cols=30 Identities=33% Similarity=0.454 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 121 LEKQIDNLKKESEKQQKEKEALEARAIEAE 150 (321)
Q Consensus 121 L~k~Ie~Lk~ele~~~~kk~~LEa~a~e~e 150 (321)
++..|..|..+......++...+++...++
T Consensus 37 ~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le 66 (89)
T PF13747_consen 37 LEEEIQRLDADRSRLAQELDQAEARANRLE 66 (89)
T ss_pred HHHHHHHHHhhHHHHHHHHHhHHHHHHHHH
Confidence 333344444444444433333344333333
No 426
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=60.66 E-value=91 Score=25.40 Aligned_cols=49 Identities=24% Similarity=0.359 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 108 AEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDL 156 (321)
Q Consensus 108 eeq~~~~~~RireL~k~Ie~Lk~ele~~~~kk~~LEa~a~e~ekk~~el 156 (321)
+.+...+..++..=.+.......++......+..|.+....++..+..+
T Consensus 59 ~~k~~rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l~~~ 107 (126)
T PF13863_consen 59 EAKRERAEKRAEEEKKKKEEKEAEIKKLKAELEELKSEISKLEEKLEEY 107 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444444444444433333
No 427
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=60.64 E-value=93 Score=27.34 Aligned_cols=56 Identities=14% Similarity=0.320 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHh-------HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 44 KIELDQLKSKIRSLESH-------IDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSL 99 (321)
Q Consensus 44 ~~el~qlk~ki~~Les~-------i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~ 99 (321)
..+|++........+.. +....+.+...+++|..+++.|..+...+.-+-+++.-.
T Consensus 43 ne~id~imer~~~ieNdlg~~~~~~~g~kk~~~~~~eelerLe~~iKdl~~lye~Vs~d~Npf 105 (157)
T COG3352 43 NEVIDAIMERMTDIENDLGKVKIEIEGQKKQLQDIKEELERLEENIKDLVSLYELVSRDFNPF 105 (157)
T ss_pred hHHHHHHHHHHHHHHhhcccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 34455444444444443 334555555555555555555555555555555555444
No 428
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=60.59 E-value=1.5e+02 Score=28.00 Aligned_cols=47 Identities=9% Similarity=0.131 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 48 DQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQK 94 (321)
Q Consensus 48 ~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~ 94 (321)
.+++.++...+..+.....++...+..+.+.+..+...+.++...+.
T Consensus 76 ~~~~~~l~~a~a~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~a~~ 122 (334)
T TIGR00998 76 TNAELALAKAEANLAALVRQTKQLEITVQQLQAKVESLKIKLEQARE 122 (334)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666655555555444444444444333333333333
No 429
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=58.93 E-value=1.7e+02 Score=28.01 Aligned_cols=52 Identities=15% Similarity=0.277 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 020809 148 EAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSRS 199 (321)
Q Consensus 148 e~ekk~~el~~~le~Lek~~~Eqk~~l~elE~~lq~~Eeei~kl~~ea~~~a 199 (321)
....++......++.+.....+.+..+.++......+-..+.+++.++..+.
T Consensus 197 ~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~ 248 (269)
T PF05278_consen 197 EKDRKLELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLS 248 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444555555555555555555555555555555555443
No 430
>KOG3634 consensus Troponin [Cytoskeleton]
Probab=58.65 E-value=28 Score=34.24 Aligned_cols=65 Identities=22% Similarity=0.369 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-hhhhhhccCchhHHHH
Q 020809 152 KISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSRSK-ELTEVHSAWLPPWLAV 216 (321)
Q Consensus 152 k~~el~~~le~Lek~~~Eqk~~l~elE~~lq~~Eeei~kl~~ea~~~a~-ql~e~~g~~l~Pwla~ 216 (321)
++.+|.+.+=.|+..+=........-+.+++.+-+.+....+.+..+.. --..+||.|-|||+-+
T Consensus 238 KiKELhqrI~kLE~EKyDLekR~eRQeYDlkeL~eRqrq~~r~~~~k~g~d~~~v~g~~~p~k~~~ 303 (361)
T KOG3634|consen 238 KIKELHQRICKLETEKYDLEKRHERQEYDLKELNERQRQVQRNSALKKGLDPEEVTGRWKPPKVQI 303 (361)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHhhhccHHHHHHHHHHHHHHHHhhcCCChhhhcCCCCCceeeh
Confidence 4444444444444443333333333333334443333333332222211 1256789999999865
No 431
>PHA01750 hypothetical protein
Probab=58.46 E-value=17 Score=27.48 Aligned_cols=22 Identities=41% Similarity=0.551 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHH
Q 020809 44 KIELDQLKSKIRSLESHIDEKT 65 (321)
Q Consensus 44 ~~el~qlk~ki~~Les~i~e~~ 65 (321)
+++++.++.+|+++.-.++++.
T Consensus 41 ~~ELdNL~~ei~~~kikqDnl~ 62 (75)
T PHA01750 41 NSELDNLKTEIEELKIKQDELS 62 (75)
T ss_pred HHHHHHHHHHHHHHHHhHHHHH
Confidence 3444444444444444444433
No 432
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=58.22 E-value=1.9e+02 Score=28.34 Aligned_cols=80 Identities=19% Similarity=0.221 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHHHHH
Q 020809 48 DQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKK--ETLNAAEQVDKAHARADELEKQI 125 (321)
Q Consensus 48 ~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~qk~--~~~~~eeq~~~~~~RireL~k~I 125 (321)
++++.+=.+|..+|+.--.+-+.+|..-.+.-.+++.++..|..|+.-|-..=.. .-.+++.+...++..-+.|++++
T Consensus 3 dd~QN~N~EL~kQiEIcqEENkiLdK~hRQKV~EVEKLsqTi~ELEEaiLagGaaaNavrdYqrq~~elneEkrtLeREL 82 (351)
T PF07058_consen 3 DDVQNQNQELMKQIEICQEENKILDKMHRQKVLEVEKLSQTIRELEEAILAGGAAANAVRDYQRQVQELNEEKRTLEREL 82 (351)
T ss_pred hhhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666666666666666667766777777777777777777666433111 33455555555555555555554
Q ss_pred HH
Q 020809 126 DN 127 (321)
Q Consensus 126 e~ 127 (321)
..
T Consensus 83 AR 84 (351)
T PF07058_consen 83 AR 84 (351)
T ss_pred HH
Confidence 43
No 433
>KOG3990 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.21 E-value=51 Score=31.36 Aligned_cols=16 Identities=25% Similarity=0.493 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHhHH
Q 020809 47 LDQLKSKIRSLESHID 62 (321)
Q Consensus 47 l~qlk~ki~~Les~i~ 62 (321)
+..|+.+|..|+..+.
T Consensus 227 i~~lkeeia~Lkk~L~ 242 (305)
T KOG3990|consen 227 IQKLKEEIARLKKLLH 242 (305)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3344444444443333
No 434
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=58.12 E-value=9.3 Score=31.48 Aligned_cols=31 Identities=16% Similarity=0.304 Sum_probs=18.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 70 GKDEVVAQKEKAIQDKSERIVSLQKELSSLQ 100 (321)
Q Consensus 70 ~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~q 100 (321)
+.|..|+.+...+..+..++..|..++..++
T Consensus 22 eVD~fl~~l~~~~~~l~~e~~~L~~~~~~l~ 52 (131)
T PF05103_consen 22 EVDDFLDELAEELERLQRENAELKEEIEELQ 52 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466666666666666666666666665553
No 435
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=58.11 E-value=1.2e+02 Score=25.88 Aligned_cols=29 Identities=24% Similarity=0.444 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 148 EAEKKISDLSAKLEKLQKINDEQKSKIRK 176 (321)
Q Consensus 148 e~ekk~~el~~~le~Lek~~~Eqk~~l~e 176 (321)
.+++.+..|--.+.++...+..++.+|..
T Consensus 81 ~~q~EldDLL~ll~Dle~K~~kyk~rLk~ 109 (136)
T PF04871_consen 81 EAQSELDDLLVLLGDLEEKRKKYKERLKE 109 (136)
T ss_pred hhhhhHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 33444444445555555555555554443
No 436
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=57.92 E-value=2.3e+02 Score=29.07 Aligned_cols=131 Identities=13% Similarity=0.136 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHh--hhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 020809 43 LKIELDQLKSKIRSLESHIDEKTQE--LKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADE 120 (321)
Q Consensus 43 l~~el~qlk~ki~~Les~i~e~~~e--Lk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~qk~~~~~~eeq~~~~~~Rire 120 (321)
.+.+++..+.++......+...-++ +-.-.......-+.|..++.++..++.+++.+.. ....-.-++..++.||..
T Consensus 247 Ae~ev~~Ae~rl~~Ar~aL~~fRn~~gvlDP~~~a~~~~~lI~~Le~qLa~~~aeL~~L~~-~~~p~sPqV~~l~~rI~a 325 (434)
T PRK15178 247 LENDVKSAQENLGAARLELLKIQHIQKDIDPKETITAIYQLIAGFETQLAEAKAEYAQLMV-NGLDQNPLIPRLSAKIKV 325 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCCCCchhHHHHHHHH
Q ss_pred HHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 121 LEKQIDNLKKESE------KQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKI 174 (321)
Q Consensus 121 L~k~Ie~Lk~ele------~~~~kk~~LEa~a~e~ekk~~el~~~le~Lek~~~Eqk~~l 174 (321)
|+++|+..+..+- .......+.+...-+.+=-...+.+.+..++....+-.+++
T Consensus 326 Le~QIa~er~kl~~~~g~~~la~~laeYe~L~le~efAe~~y~sAlaaLE~AR~EA~RQ~ 385 (434)
T PRK15178 326 LEKQIGEQRNRLSNKLGSQGSSESLSLFEDLRLQSEIAKARWESALQTLQQGKLQALRER 385 (434)
T ss_pred HHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
No 437
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=57.59 E-value=2e+02 Score=28.40 Aligned_cols=78 Identities=17% Similarity=0.189 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 020809 125 IDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSRSKEL 202 (321)
Q Consensus 125 Ie~Lk~ele~~~~kk~~LEa~a~e~ekk~~el~~~le~Lek~~~Eqk~~l~elE~~lq~~Eeei~kl~~ea~~~a~ql 202 (321)
-..++.+++....++..+|...-.-..+-...|..+-+|...+..+...+..+...++.++.-...++.+-+.+...+
T Consensus 245 F~~fK~E~ekmtKk~kklEKE~l~wr~K~e~aNk~vL~la~ekt~~~k~~~~lq~kiq~LekLcRALq~ernel~~~~ 322 (391)
T KOG1850|consen 245 FTKFKQEMEKMTKKIKKLEKETLIWRTKWENANKAVLQLAEEKTVRDKEYETLQKKIQRLEKLCRALQTERNELNKKL 322 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 667788888888888888877777777888899999999999999999999999999999888888877777665433
No 438
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=57.22 E-value=1.2e+02 Score=25.70 Aligned_cols=28 Identities=29% Similarity=0.265 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 151 KKISDLSAKLEKLQKINDEQKSKIRKTE 178 (321)
Q Consensus 151 kk~~el~~~le~Lek~~~Eqk~~l~elE 178 (321)
..+..+...+..|++...+++..|+..+
T Consensus 93 ~llk~y~~~~~~L~k~I~~~e~iI~~fe 120 (126)
T PF09403_consen 93 ELLKKYKDLLNKLDKEIAEQEQIIDNFE 120 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555556665555555555554
No 439
>COG3524 KpsE Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=57.15 E-value=2e+02 Score=28.28 Aligned_cols=45 Identities=20% Similarity=0.240 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 125 IDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDE 169 (321)
Q Consensus 125 Ie~Lk~ele~~~~kk~~LEa~a~e~ekk~~el~~~le~Lek~~~E 169 (321)
|..|+.++-.++.++..+.+-.+....++-.+....+.+++....
T Consensus 225 vs~Le~eL~~iqaqL~tvks~m~~~nPqi~~LkarieSlrkql~q 269 (372)
T COG3524 225 VSKLEDELIVIQAQLDTVKSVMNPENPQIPGLKARIESLRKQLLQ 269 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHH
Confidence 445555555555444444333333333333444444444443333
No 440
>PF14992 TMCO5: TMCO5 family
Probab=57.08 E-value=1.9e+02 Score=27.90 Aligned_cols=10 Identities=30% Similarity=0.663 Sum_probs=5.1
Q ss_pred HHHHhhhccc
Q 020809 308 IRVQEVVDPY 317 (321)
Q Consensus 308 ~k~~~~~~py 317 (321)
-+.+.++.|+
T Consensus 261 w~LR~~l~Pf 270 (280)
T PF14992_consen 261 WRLREFLFPF 270 (280)
T ss_pred HHHHHHHhhh
Confidence 3455555554
No 441
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=56.96 E-value=2.4e+02 Score=29.18 Aligned_cols=33 Identities=9% Similarity=0.204 Sum_probs=21.1
Q ss_pred chhhHHHHhHhHHHHHhhhhhcCchhHHHHhhhc
Q 020809 282 EPHVQTLKTKTIEACEATKTAVTPHIIRVQEVVD 315 (321)
Q Consensus 282 ~p~~q~~~~~~~~~~~~~~~~~~ph~~k~~~~~~ 315 (321)
.-..+.+...+...|+....++ -||.++-..++
T Consensus 365 ~~na~eIa~~a~~Lydkl~~f~-~~~~klG~~L~ 397 (475)
T PRK10361 365 SRNAQQIADRASKLYDKMRLFV-DDMSAIGQSLD 397 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 3445667888888888866554 46666655443
No 442
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=56.90 E-value=1.3e+02 Score=26.58 Aligned_cols=12 Identities=58% Similarity=0.808 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q 020809 123 KQIDNLKKESEK 134 (321)
Q Consensus 123 k~Ie~Lk~ele~ 134 (321)
.+|+.+++++++
T Consensus 161 ~ei~~lk~el~~ 172 (192)
T PF05529_consen 161 EEIEKLKKELEK 172 (192)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 443
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=56.22 E-value=1e+02 Score=24.56 Aligned_cols=58 Identities=34% Similarity=0.383 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 133 EKQQKEKEALEARAIEAEKKISDLSA---KLEKLQKINDEQKSKIRKTERALKVAEEEMMR 190 (321)
Q Consensus 133 e~~~~kk~~LEa~a~e~ekk~~el~~---~le~Lek~~~Eqk~~l~elE~~lq~~Eeei~k 190 (321)
.....+.+.|.++++.+.+.+..+.. ..+.+.....+.+..+..++..+..++.++..
T Consensus 39 r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~ 99 (108)
T PF02403_consen 39 RELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEELNE 99 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444444333 23334444444444455555554444444443
No 444
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.01 E-value=2.5e+02 Score=29.00 Aligned_cols=15 Identities=13% Similarity=0.200 Sum_probs=6.6
Q ss_pred HhHHHhhCcchHHHH
Q 020809 226 ETHWNAHGKPAMDVA 240 (321)
Q Consensus 226 ~~~~~~hg~p~~~~~ 240 (321)
+..-.-|..-|++.|
T Consensus 440 sakhddhvR~aykll 454 (521)
T KOG1937|consen 440 SAKHDDHVRLAYKLL 454 (521)
T ss_pred HhccCHHHHHHHHHH
Confidence 333344444444444
No 445
>PRK14011 prefoldin subunit alpha; Provisional
Probab=55.97 E-value=1.4e+02 Score=25.90 Aligned_cols=26 Identities=27% Similarity=0.344 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 125 IDNLKKESEKQQKEKEALEARAIEAE 150 (321)
Q Consensus 125 Ie~Lk~ele~~~~kk~~LEa~a~e~e 150 (321)
++-+++.++.++.....|.....+..
T Consensus 90 ~~~~~~ri~~l~~~~~~l~~~i~~~~ 115 (144)
T PRK14011 90 IEDFKKSVEELDKTKKEGNKKIEELN 115 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444443333333333333
No 446
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=55.85 E-value=1.6e+02 Score=26.82 Aligned_cols=23 Identities=9% Similarity=0.346 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 020809 125 IDNLKKESEKQQKEKEALEARAI 147 (321)
Q Consensus 125 Ie~Lk~ele~~~~kk~~LEa~a~ 147 (321)
+..+..+|+.++.....||..+.
T Consensus 162 l~~v~~Dl~~ie~QV~~Le~~L~ 184 (195)
T PF12761_consen 162 LKSVREDLDTIEEQVDGLESHLS 184 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555544444444443
No 447
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=55.68 E-value=2e+02 Score=27.89 Aligned_cols=47 Identities=17% Similarity=0.195 Sum_probs=23.4
Q ss_pred HHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 53 KIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSL 99 (321)
Q Consensus 53 ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~ 99 (321)
-+.++...+.++....+..--.-+++.++-..+-.+|+.|...|..+
T Consensus 78 s~r~lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~ 124 (302)
T PF09738_consen 78 SLRDLKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEEL 124 (302)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555544444444445555555555555555544444
No 448
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=54.91 E-value=1.4e+02 Score=30.41 Aligned_cols=36 Identities=17% Similarity=0.160 Sum_probs=23.6
Q ss_pred HHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 62 DEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELS 97 (321)
Q Consensus 62 ~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~ 97 (321)
.....++-++|.+-..+...++.+....+.+..+|-
T Consensus 25 ~~~~~~~~~ld~~~r~~~~~~e~l~~~rn~~sk~ig 60 (429)
T COG0172 25 ALDVDKLLELDEERRKLLRELEELQAERNELSKEIG 60 (429)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666677777777777776666666666665
No 449
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=54.85 E-value=1.1e+02 Score=24.73 Aligned_cols=22 Identities=18% Similarity=0.241 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHH
Q 020809 43 LKIELDQLKSKIRSLESHIDEK 64 (321)
Q Consensus 43 l~~el~qlk~ki~~Les~i~e~ 64 (321)
+...+++......+.+...++.
T Consensus 35 I~~~~~~a~~~~~ea~~~~~e~ 56 (132)
T PF00430_consen 35 IQSELEEAEELKEEAEQLLAEY 56 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHH
Confidence 3444444444444444444433
No 450
>PF14992 TMCO5: TMCO5 family
Probab=54.72 E-value=2.1e+02 Score=27.64 Aligned_cols=17 Identities=29% Similarity=0.495 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHhHH
Q 020809 46 ELDQLKSKIRSLESHID 62 (321)
Q Consensus 46 el~qlk~ki~~Les~i~ 62 (321)
++++....|..|++.+.
T Consensus 26 ki~~~E~~iq~Le~Eit 42 (280)
T PF14992_consen 26 KIQEKEGAIQSLEREIT 42 (280)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444443
No 451
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=54.70 E-value=1.7e+02 Score=26.70 Aligned_cols=95 Identities=24% Similarity=0.293 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 84 DKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKL 163 (321)
Q Consensus 84 e~~~~I~~Lq~eI~~~qk~~~~~~eeq~~~~~~RireL~k~Ie~Lk~ele~~~~kk~~LEa~a~e~ekk~~el~~~le~L 163 (321)
+....|..|...+.........+-++-...+..++.+|+.++-...+....++.+...|..-...-+....++...-..+
T Consensus 15 e~~~~i~~L~~q~~~~~~~i~~~r~~l~s~y~~q~~~Lq~qLlq~~k~~~~l~~eLq~l~~~~~~k~~qe~eI~~Le~e~ 94 (206)
T PF14988_consen 15 EKEKKIEKLWKQYIQQLEEIQRERQELVSRYAKQTSELQDQLLQKEKEQAKLQQELQALKEFRRLKEQQEREIQTLEEEL 94 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444433332323333344444555566666666555555555555555444443333333333333333444
Q ss_pred HHHHHHHHHHHHHHH
Q 020809 164 QKINDEQKSKIRKTE 178 (321)
Q Consensus 164 ek~~~Eqk~~l~elE 178 (321)
..+..+....+..++
T Consensus 95 ~~~~~e~~~~l~~~~ 109 (206)
T PF14988_consen 95 EKMRAEHAEKLQEAE 109 (206)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444433
No 452
>PF06476 DUF1090: Protein of unknown function (DUF1090); InterPro: IPR009468 This family consists of several bacterial proteins of unknown function and is known as YqjC in Escherichia coli.
Probab=54.68 E-value=1.2e+02 Score=25.10 Aligned_cols=107 Identities=18% Similarity=0.274 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhhhhcccCCCCCCcccccCCCCchHHHHHHHHHH-----HHHHHHHhHHHHHHhhhcHHHHHHHHHH
Q 020809 6 LVIFSLFFALILTAADVSIQGEDVPPLTASDAVDSSPLKIELDQLKS-----KIRSLESHIDEKTQELKGKDEVVAQKEK 80 (321)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~el~qlk~-----ki~~Les~i~e~~~eLk~kd~~I~q~ek 80 (321)
|+++++++++.+.++.+...=.. -...|+.+|+..+. ++..|+.-++++...=.. +.-..+.+.
T Consensus 2 l~~~~~~~~~a~~~~~~~~gC~~----------K~~~Ie~qI~~Ak~~gN~~rv~GLe~AL~~v~~~Ctd-~~l~~e~q~ 70 (115)
T PF06476_consen 2 LAALLALSSAAAAAAAALTGCEA----------KEQAIEKQIEYAKAHGNQHRVAGLEKALEEVKAHCTD-EGLKAERQQ 70 (115)
T ss_pred hHHHHHHHHHHHhhccccCcHHH----------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcCC-chhhHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHH
Q 020809 81 AIQDKSERIVSLQKELSSLQKK-ETLNAAEQVDKAHARADELEK 123 (321)
Q Consensus 81 ~i~e~~~~I~~Lq~eI~~~qk~-~~~~~eeq~~~~~~RireL~k 123 (321)
.|.++..+|..-+.++...+.. .......+..++..--.+|+.
T Consensus 71 ki~~~~~kV~ere~eL~eA~~~G~~~KI~K~~~KL~ea~~eL~~ 114 (115)
T PF06476_consen 71 KIAEKQQKVAEREAELKEAQAKGDSDKIAKRQKKLAEAKAELKE 114 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhh
No 453
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=54.44 E-value=89 Score=31.64 Aligned_cols=28 Identities=29% Similarity=0.448 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 163 LQKINDEQKSKIRKTERALKVAEEEMMR 190 (321)
Q Consensus 163 Lek~~~Eqk~~l~elE~~lq~~Eeei~k 190 (321)
+.....+....+.++...+..+++++.+
T Consensus 380 l~~~~~~l~~~~~~l~~~~~~l~~~l~~ 407 (451)
T PF03961_consen 380 LKEKKKELKEELKELKEELKELKEELER 407 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333444444444444444444433
No 454
>COG5570 Uncharacterized small protein [Function unknown]
Probab=54.42 E-value=52 Score=23.78 Aligned_cols=17 Identities=29% Similarity=0.431 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 020809 114 AHARADELEKQIDNLKK 130 (321)
Q Consensus 114 ~~~RireL~k~Ie~Lk~ 130 (321)
++.|-=.|+.+|++|+.
T Consensus 38 LKRrKL~lKeeIEkLka 54 (57)
T COG5570 38 LKRRKLRLKEEIEKLKA 54 (57)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 33344445555555554
No 455
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=54.08 E-value=1e+02 Score=27.46 Aligned_cols=56 Identities=21% Similarity=0.501 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhhhcHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
Q 020809 45 IELDQLKSKIRSLESHIDEKTQELKGKDEVVAQ-----KEKAIQDKSERIVSLQKELSSLQ 100 (321)
Q Consensus 45 ~el~qlk~ki~~Les~i~e~~~eLk~kd~~I~q-----~ek~i~e~~~~I~~Lq~eI~~~q 100 (321)
..++.+..+.+.+..+++++...+..++..+.. --.+|+++-..|.+|+..|...+
T Consensus 85 ~R~~lLe~~~~~l~~ri~eLe~~l~~kad~vvsYqll~hr~e~ee~~~~l~~le~~~~~~e 145 (175)
T PRK13182 85 VDFEQLEAQLNTITRRLDELERQLQQKADDVVSYQLLQHRREMEEMLERLQKLEARLKKLE 145 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666666665555555555543 33566666666666666665543
No 456
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=53.98 E-value=1.1e+02 Score=24.22 Aligned_cols=28 Identities=21% Similarity=0.307 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 121 LEKQIDNLKKESEKQQKEKEALEARAIE 148 (321)
Q Consensus 121 L~k~Ie~Lk~ele~~~~kk~~LEa~a~e 148 (321)
|...-..|-.++.........|+.-..+
T Consensus 44 l~~dr~rLa~eLD~~~ar~~~Le~~~~E 71 (89)
T PF13747_consen 44 LDADRSRLAQELDQAEARANRLEEANRE 71 (89)
T ss_pred HHhhHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333
No 457
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=53.97 E-value=1.5e+02 Score=26.60 Aligned_cols=12 Identities=25% Similarity=0.562 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHH
Q 020809 117 RADELEKQIDNL 128 (321)
Q Consensus 117 RireL~k~Ie~L 128 (321)
++..|+.+++..
T Consensus 152 Ka~~L~~eL~~F 163 (171)
T PF04799_consen 152 KANWLESELERF 163 (171)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333344444433
No 458
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=53.80 E-value=46 Score=26.17 Aligned_cols=27 Identities=30% Similarity=0.457 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 125 IDNLKKESEKQQKEKEALEARAIEAEK 151 (321)
Q Consensus 125 Ie~Lk~ele~~~~kk~~LEa~a~e~ek 151 (321)
|+++.++|+..+.++.++..+.+.++.
T Consensus 3 leKi~~eieK~k~Kiae~Q~rlK~Le~ 29 (83)
T PF14193_consen 3 LEKIRAEIEKTKEKIAELQARLKELEA 29 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555444444444444444
No 459
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=53.60 E-value=2.8e+02 Score=28.86 Aligned_cols=25 Identities=36% Similarity=0.344 Sum_probs=9.7
Q ss_pred HHHhhhcHHHHHHHHHHHHHHHHHH
Q 020809 64 KTQELKGKDEVVAQKEKAIQDKSER 88 (321)
Q Consensus 64 ~~~eLk~kd~~I~q~ek~i~e~~~~ 88 (321)
+.++++--+...++..-.|+.+.+.
T Consensus 339 L~~R~K~Q~q~~~~~r~ri~~i~e~ 363 (508)
T KOG3091|consen 339 LRQRLKVQDQEVKQHRIRINAIGER 363 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444333333333
No 460
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=53.40 E-value=95 Score=31.41 Aligned_cols=13 Identities=23% Similarity=0.100 Sum_probs=5.1
Q ss_pred hCcchHHHHHHHH
Q 020809 232 HGKPAMDVAIQKA 244 (321)
Q Consensus 232 hg~p~~~~~~~~~ 244 (321)
+|.-+...+++-+
T Consensus 168 ~ga~L~~aL~~~~ 180 (425)
T PRK05431 168 DGARLERALIQFM 180 (425)
T ss_pred HHHHHHHHHHHHH
Confidence 3433334443333
No 461
>KOG2629 consensus Peroxisomal membrane anchor protein (peroxin) [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=53.11 E-value=1.5e+02 Score=28.84 Aligned_cols=31 Identities=13% Similarity=0.257 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 71 KDEVVAQKEKAIQDKSERIVSLQKELSSLQK 101 (321)
Q Consensus 71 kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~qk 101 (321)
+|+.-..+.+.++.+..++..+...+...|+
T Consensus 127 Ld~~~~~~~~~~~~l~~~va~v~q~~~~qq~ 157 (300)
T KOG2629|consen 127 LDDQFDKAAKSLNALMDEVAQVSQLLATQQS 157 (300)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555555555555555554443
No 462
>PRK11020 hypothetical protein; Provisional
Probab=53.00 E-value=1.4e+02 Score=25.06 Aligned_cols=78 Identities=22% Similarity=0.237 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------hhHHHH
Q 020809 42 PLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKK-------------ETLNAA 108 (321)
Q Consensus 42 ~l~~el~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~qk~-------------~~~~~e 108 (321)
++.++|..|..++..+..+.... ..+.=.+.|.+...++..+..+|+.|.+.=..-=.+ -.+.-+
T Consensus 2 ~~K~Eiq~L~drLD~~~~Klaaa--~~rgd~~~i~qf~~E~~~l~k~I~~lk~~~~~~lske~~~l~~lpF~R~iTK~EQ 79 (118)
T PRK11020 2 VEKNEIKRLSDRLDAIRHKLAAA--SLRGDAEKYAQFEKEKATLEAEIARLKEVQSQKLSKEAQKLMKLPFSRAITKKEQ 79 (118)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHH--HhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchhccHHHH
Q ss_pred HHHHHHHHHHHHH
Q 020809 109 EQVDKAHARADEL 121 (321)
Q Consensus 109 eq~~~~~~RireL 121 (321)
.-.+++++-||.|
T Consensus 80 ADMGkLKKSVrGL 92 (118)
T PRK11020 80 ADMGKLKKSVRGL 92 (118)
T ss_pred HhHHHHhhcccce
No 463
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=52.97 E-value=2.5e+02 Score=28.15 Aligned_cols=144 Identities=19% Similarity=0.322 Sum_probs=0.0
Q ss_pred hhhcccCCCCCCc-cc-ccCCCCchHHHHHHHHHHHH-HHHHHhHHHHHHhhhcHHHHH--HHHHHHHHHHHHHHHHHHH
Q 020809 20 ADVSIQGEDVPPL-TA-SDAVDSSPLKIELDQLKSKI-RSLESHIDEKTQELKGKDEVV--AQKEKAIQDKSERIVSLQK 94 (321)
Q Consensus 20 ~~~~~~~~~~~~~-~~-~~~~~~~~l~~el~qlk~ki-~~Les~i~e~~~eLk~kd~~I--~q~ek~i~e~~~~I~~Lq~ 94 (321)
+|-.+|--.+.+. |+ --.++...+.++++++..++ ..+...+....+.+..+...+ ..-...+.....+++.+..
T Consensus 240 ~D~vAd~ra~TPtaaae~~~~~~~e~~q~Ld~l~~rL~~a~~~~L~~~~~~L~~L~~rL~~~~P~~~l~~~~q~L~~l~~ 319 (438)
T PRK00286 240 ADFVADLRAPTPTAAAELAVPDRAELLQRLQQLQQRLARAMRRRLEQKRQRLDQLARRLKFQSPERLLAQQQQRLDRLQQ 319 (438)
T ss_pred HHHhhhccCCChHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 95 ELSSLQKKETLNAAEQVDKAHARADE--LEKQIDNLKKESEKQQKEK-EALEARAIEAEKKISDLSAKLEKL 163 (321)
Q Consensus 95 eI~~~qk~~~~~~eeq~~~~~~Rire--L~k~Ie~Lk~ele~~~~kk-~~LEa~a~e~ekk~~el~~~le~L 163 (321)
.+...-.........+...+..|+.. -...+...+..++...... ..+.........++..+...+..+
T Consensus 320 rL~~a~~~~L~~~~~~L~~l~~rL~~lsP~~~L~r~~qrL~~L~~rL~~a~~~~L~~~~~rL~~l~~rL~~l 391 (438)
T PRK00286 320 RLQRALERRLRLAKQRLERLSQRLQQQNPQRRIERAQQRLEQLEQRLRRAMRRQLKRKRQRLEALAQQLEAL 391 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
No 464
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=52.55 E-value=80 Score=31.00 Aligned_cols=62 Identities=24% Similarity=0.314 Sum_probs=0.0
Q ss_pred CchHHHHHHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 40 SSPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQK 101 (321)
Q Consensus 40 ~~~l~~el~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~qk 101 (321)
+..++++++.+..++..|....+....++...+.++.+++..+..+......+..+++.++.
T Consensus 1 l~el~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 62 (378)
T TIGR01554 1 LSELKEQREEIVAEIRSLLDKAEKLEKELTAAALEKEELETDVEKLKEEIKLLEDAIADLEK 62 (378)
T ss_pred ChhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 465
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=52.37 E-value=2.2e+02 Score=27.21 Aligned_cols=123 Identities=15% Similarity=0.216 Sum_probs=0.0
Q ss_pred CCchHHHHHHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhHHHHHHHHHHHH
Q 020809 39 DSSPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKK--ETLNAAEQVDKAHA 116 (321)
Q Consensus 39 ~~~~l~~el~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~qk~--~~~~~eeq~~~~~~ 116 (321)
+...+..++++.+..+..++.++.......+ ..+|...+..+...+.++...+...+..+.- .-.--....+.+..
T Consensus 75 d~~~~~~~l~~~~a~l~~~~~~l~~~~~~~~--~~~i~~~~~~l~~ak~~l~~a~~~~~r~~~L~~~g~vs~~~~~~~~~ 152 (331)
T PRK03598 75 DAAPYENALMQAKANVSVAQAQLDLMLAGYR--DEEIAQARAAVKQAQAAYDYAQNFYNRQQGLWKSRTISANDLENARS 152 (331)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHccCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 117 RADELEKQIDNLKKESEKQQ-----KEKEALEARAIEAEKKISDLSAKLEKL 163 (321)
Q Consensus 117 RireL~k~Ie~Lk~ele~~~-----~kk~~LEa~a~e~ekk~~el~~~le~L 163 (321)
.+...+..+...+..+.... ..+..++.....++..+..++..++..
T Consensus 153 ~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~a~~~l~~~ 204 (331)
T PRK03598 153 SRDQAQATLKSAQDKLSQYREGNRPQDIAQAKASLAQAQAALAQAELNLQDT 204 (331)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 466
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=52.28 E-value=1.2e+02 Score=28.41 Aligned_cols=75 Identities=27% Similarity=0.428 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhhh------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 020809 43 LKIELDQLKSKIRSLESHIDEKTQELK------GKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHA 116 (321)
Q Consensus 43 l~~el~qlk~ki~~Les~i~e~~~eLk------~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~qk~~~~~~eeq~~~~~~ 116 (321)
+..-+++|+.++..++..++.+....+ .....++.++..|....--|..|+.=+..+.+ +..+.+.
T Consensus 127 l~~~Id~L~~QiE~~E~E~E~L~~~~kKkk~~~~~~~r~~~l~~~ierhk~Hi~kLE~lLR~L~N-~~l~~e~------- 198 (233)
T PF04065_consen 127 LKDSIDELNRQIEQLEAEIESLSSQKKKKKKDSTKQERIEELESRIERHKFHIEKLELLLRLLDN-DELDPEQ------- 198 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCCHHH-------
Q ss_pred HHHHHHHHHHHHHHHHH
Q 020809 117 RADELEKQIDNLKKESE 133 (321)
Q Consensus 117 RireL~k~Ie~Lk~ele 133 (321)
|..++.+++
T Consensus 199 --------V~~ikedie 207 (233)
T PF04065_consen 199 --------VEDIKEDIE 207 (233)
T ss_pred --------HHHHHHHHH
No 467
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=51.82 E-value=82 Score=25.64 Aligned_cols=67 Identities=7% Similarity=0.007 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhhhhcccCCCCCCcccccCCCCchHHHHHHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHH
Q 020809 7 VIFSLFFALILTAADVSIQGEDVPPLTASDAVDSSPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKS 86 (321)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~el~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~ 86 (321)
+++++++++++..+=..+-|+.+-- ...+++.++.+++.+.+.+.++-..+..+|..++....-++
T Consensus 3 ~~~~vll~ll~~l~y~l~~g~~G~~--------------~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~~dyiE 68 (105)
T PRK00888 3 LLTLLLLALLVWLQYSLWFGKNGIL--------------DYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGGQEAIE 68 (105)
T ss_pred HHHHHHHHHHHHHHHHHhccCCcHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHH
Q ss_pred H
Q 020809 87 E 87 (321)
Q Consensus 87 ~ 87 (321)
.
T Consensus 69 e 69 (105)
T PRK00888 69 E 69 (105)
T ss_pred H
No 468
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=51.73 E-value=1.7e+02 Score=25.76 Aligned_cols=106 Identities=15% Similarity=0.226 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHHHHHHHhHHHHH-HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 020809 41 SPLKIELDQLKSKIRSLESHIDEKT-QELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARAD 119 (321)
Q Consensus 41 ~~l~~el~qlk~ki~~Les~i~e~~-~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~qk~~~~~~eeq~~~~~~Rir 119 (321)
..+++.....+..+.+|.+.+.... .++..+....+.++.+++.+..+ |..+|..++.+-..+.....+....-..
T Consensus 47 ~d~e~~~~~~~a~~~eLr~el~~~~k~~~~~lr~~~e~L~~eie~l~~~---L~~ei~~l~a~~klD~n~eK~~~r~e~~ 123 (177)
T PF07798_consen 47 SDLENQEYLFKAAIAELRSELQNSRKSEFAELRSENEKLQREIEKLRQE---LREEINKLRAEVKLDLNLEKGRIREEQA 123 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q 020809 120 ELEKQIDNLKKESEKQQKEK-EALEARAIEA 149 (321)
Q Consensus 120 eL~k~Ie~Lk~ele~~~~kk-~~LEa~a~e~ 149 (321)
.++..|..+...+...-... ..+|+-+-+.
T Consensus 124 ~~~~ki~e~~~ki~~ei~~lr~~iE~~K~~~ 154 (177)
T PF07798_consen 124 KQELKIQELNNKIDTEIANLRTEIESLKWDT 154 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 469
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=51.52 E-value=3.4e+02 Score=29.19 Aligned_cols=91 Identities=13% Similarity=0.232 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHHHHH
Q 020809 48 DQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKK--ETLNAAEQVDKAHARADELEKQI 125 (321)
Q Consensus 48 ~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~qk~--~~~~~eeq~~~~~~RireL~k~I 125 (321)
+..-.+..+|+.+++.+-.+|..+|..|...+.++..-+..+.....++..++.+ -...+..+.+......++-.+.|
T Consensus 75 e~~~~~r~~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~~~k~~LL~Ay~q~c~~~~~~l~e~~~rl 154 (632)
T PF14817_consen 75 ENEARRRRELEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKISDSRHKQLLLEAYSQQCEEQRRILREYTKRL 154 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHH
Q 020809 126 DNLKKESEKQQKE 138 (321)
Q Consensus 126 e~Lk~ele~~~~k 138 (321)
...=..+.++..+
T Consensus 155 ~~~~~~~q~~~R~ 167 (632)
T PF14817_consen 155 QGQVEQLQDIQRK 167 (632)
T ss_pred HHHHHHHHHHHhh
No 470
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=51.42 E-value=1.3e+02 Score=31.88 Aligned_cols=91 Identities=22% Similarity=0.216 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 108 AEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEE 187 (321)
Q Consensus 108 eeq~~~~~~RireL~k~Ie~Lk~ele~~~~kk~~LEa~a~e~ekk~~el~~~le~Lek~~~Eqk~~l~elE~~lq~~Eee 187 (321)
..+......+.+.+++.++.+.+.++....++.++++...+-+.--..-...+..+.+...+.+..++.+......++++
T Consensus 548 ~~~~~~~~~~~~~~~~~~~~~e~~i~~le~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~w~~l~~~ 627 (638)
T PRK10636 548 KRREAELRTQTQPLRKEIARLEKEMEKLNAQLAQAEEKLGDSELYDQSRKAELTACLQQQASAKSGLEECEMAWLEAQEQ 627 (638)
T ss_pred hhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHhhh
Q 020809 188 MMRAKFEATSR 198 (321)
Q Consensus 188 i~kl~~ea~~~ 198 (321)
+..+..+.+..
T Consensus 628 ~~~~~~~~~~~ 638 (638)
T PRK10636 628 LEQMLLEGQSN 638 (638)
T ss_pred HHHHhhhhccC
No 471
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=51.35 E-value=78 Score=24.57 Aligned_cols=61 Identities=20% Similarity=0.339 Sum_probs=0.0
Q ss_pred cCCCCchHHHHHHHHHHHHHHHHHhHHH---HHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 36 DAVDSSPLKIELDQLKSKIRSLESHIDE---KTQELKGKDEVVAQKEKAIQDKSERIVSLQKEL 96 (321)
Q Consensus 36 ~~~~~~~l~~el~qlk~ki~~Les~i~e---~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI 96 (321)
...+..++....+.++.++....+.+.+ +..-+.+-..+|..++..+..+..-+..+.+.+
T Consensus 19 ~~~~~kd~~~~~~~lk~Klq~ar~~i~~lpgi~~s~eeq~~~i~~Le~~i~~k~~~L~~~~~~~ 82 (83)
T PF07544_consen 19 PPLSSKDLDTATGSLKHKLQKARAAIRELPGIDRSVEEQEEEIEELEEQIRKKREVLQKFKERV 82 (83)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 472
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=50.94 E-value=2e+02 Score=28.51 Aligned_cols=72 Identities=18% Similarity=0.259 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 104 TLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTE 178 (321)
Q Consensus 104 ~~~~eeq~~~~~~RireL~k~Ie~Lk~ele~~~~kk~~LEa~a~e~ekk~~el~~~le~Lek~~~Eqk~~l~elE 178 (321)
+...+.-....++++..+..+.+.|+..-++++..+.+|++-...++.+...++...+-|.....| .+.+++
T Consensus 213 sa~~eklR~r~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~e---al~~~~ 284 (365)
T KOG2391|consen 213 SAVREKLRRRREEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVRE---ALEKAE 284 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH---HHhhhc
No 473
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=50.72 E-value=1.9e+02 Score=25.98 Aligned_cols=102 Identities=19% Similarity=0.282 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH----HHHH
Q 020809 45 IELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHA----RADE 120 (321)
Q Consensus 45 ~el~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~qk~~~~~~eeq~~~~~~----Rire 120 (321)
.....++.++..|+..++.+...+.++...|... +.-+.-+.+-..+..++..++. ....+......+.. ++..
T Consensus 62 ~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~-~~~r~~~~eR~~~l~~l~~l~~-~~~~l~~el~~~~~~Dp~~i~~ 139 (188)
T PF03962_consen 62 QAKQKRQNKLEKLQKEIEELEKKIEELEEKIEEA-KKGREESEEREELLEELEELKK-ELKELKKELEKYSENDPEKIEK 139 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccccHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 121 LEKQIDNLKKESEKQQKEKEALEARAIE 148 (321)
Q Consensus 121 L~k~Ie~Lk~ele~~~~kk~~LEa~a~e 148 (321)
+++.+..++.....-...+..|.+....
T Consensus 140 ~~~~~~~~~~~anrwTDNI~~l~~~~~~ 167 (188)
T PF03962_consen 140 LKEEIKIAKEAANRWTDNIFSLKSYLKK 167 (188)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHH
No 474
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=50.72 E-value=2.4e+02 Score=27.28 Aligned_cols=93 Identities=17% Similarity=0.312 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 82 IQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLE 161 (321)
Q Consensus 82 i~e~~~~I~~Lq~eI~~~qk~~~~~~eeq~~~~~~RireL~k~Ie~Lk~ele~~~~kk~~LEa~a~e~ekk~~el~~~le 161 (321)
++.++--|.+|...+.+++. |+.+=+.+|+.|+.++..++.+=-+=|=.+-+++=-+.++...+.
T Consensus 63 LQQKEV~iRHLkakLkes~~---------------~l~dRetEI~eLksQL~RMrEDWIEEECHRVEAQLALKEARkEIk 127 (305)
T PF15290_consen 63 LQQKEVCIRHLKAKLKESEN---------------RLHDRETEIDELKSQLARMREDWIEEECHRVEAQLALKEARKEIK 127 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHH---------------HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 162 KLQKINDEQKSKIRKTERALKVAEEEMM 189 (321)
Q Consensus 162 ~Lek~~~Eqk~~l~elE~~lq~~Eeei~ 189 (321)
+|...++..+..|.+-.+..+...--|.
T Consensus 128 QLkQvieTmrssL~ekDkGiQKYFvDIN 155 (305)
T PF15290_consen 128 QLKQVIETMRSSLAEKDKGIQKYFVDIN 155 (305)
T ss_pred HHHHHHHHHHhhhchhhhhHHHHHhhhh
No 475
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=50.60 E-value=1.9e+02 Score=26.02 Aligned_cols=167 Identities=20% Similarity=0.294 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhh----hhhcccCCCCCCcccccCCCCchHHHHHHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHH
Q 020809 6 LVIFSLFFALILTA----ADVSIQGEDVPPLTASDAVDSSPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKA 81 (321)
Q Consensus 6 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~el~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~ 81 (321)
.+++++++++++|. ... +.++...+...+.+..+-..--..+. ...
T Consensus 5 ~~i~~~~vG~~~G~~~~~~~~----------------------------~~~~~~A~~~A~~i~~~A~~eAe~~~--ke~ 54 (201)
T PF12072_consen 5 IAIVALIVGIGIGYLVRKKIN----------------------------RKKLEQAEKEAEQILEEAEREAEAIK--KEA 54 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHH--HHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 82 IQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLE 161 (321)
Q Consensus 82 i~e~~~~I~~Lq~eI~~~qk~~~~~~eeq~~~~~~RireL~k~Ie~Lk~ele~~~~kk~~LEa~a~e~ekk~~el~~~le 161 (321)
+-+....+..+..+++.--+....++...-..+..|-..|++..+.|.+.-..+..+...|..+...++.+..++.....
T Consensus 55 ~~eakee~~~~r~~~E~E~~~~~~el~~~E~rl~~rE~~L~~~~~~L~~~e~~l~~~~~~l~~~~~~l~~~~~e~~~~~~ 134 (201)
T PF12072_consen 55 ELEAKEEAQKLRQELERELKERRKELQRLEKRLQQREEQLDRRLEQLEKREEELEKKEEELEQRKEELEEREEELEELIE 134 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHH---------HHHHHHHHHHHH-----HHHHHHHHHHHHHHhhhhhhh
Q 020809 162 KLQKINDE---------QKSKIRKTERAL-----KVAEEEMMRAKFEATSRSKEL 202 (321)
Q Consensus 162 ~Lek~~~E---------qk~~l~elE~~l-----q~~Eeei~kl~~ea~~~a~ql 202 (321)
........ ....+..++... ..+-.-...+..++...++.|
T Consensus 135 ~~~~~Le~iAglT~eEAk~~Ll~~le~e~~~e~a~~ir~~eeeak~~A~~~Ar~I 189 (201)
T PF12072_consen 135 EQQQELEEIAGLTAEEAKEILLEKLEEEARREAAALIRRIEEEAKEEADKKARRI 189 (201)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 476
>PF00901 Orbi_VP5: Orbivirus outer capsid protein VP5; InterPro: IPR000145 The orbivirus VP5 protein is one of the two proteins (with VP2) which make up the virus particle outer capsid. Cryoelectron microscopy indicates that VP5 is a trimer suggesting that there are 360 copies of VP5 per virion [].; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=50.53 E-value=3.1e+02 Score=28.52 Aligned_cols=160 Identities=16% Similarity=0.198 Sum_probs=0.0
Q ss_pred HHHH-HhhhhhhcccCCCCCCcccccCCCCchHHHHHHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHH
Q 020809 12 FFAL-ILTAADVSIQGEDVPPLTASDAVDSSPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIV 90 (321)
Q Consensus 12 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~el~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~ 90 (321)
+++| |+|+.|...|--.|-+ ..+..|+.+|+....+ |.-...-.+.|.++-...-
T Consensus 66 AVilNVlG~~d~~pDPLsPgE----------------~~l~~Kl~eLE~e~k~--------d~v~~khn~~I~~k~g~~L 121 (508)
T PF00901_consen 66 AVILNVLGTGDEPPDPLSPGE----------------QGLQRKLKELEDEQKE--------DEVREKHNKKIIEKFGNDL 121 (508)
T ss_pred HHHHHhccCCCCCCCCCCHhH----------------HHHHHHHHHHHHHHhh--------HHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 020809 91 SLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEK-EALEARAIEAEKKISDLSAKLEKLQKIND- 168 (321)
Q Consensus 91 ~Lq~eI~~~qk~~~~~~eeq~~~~~~RireL~k~Ie~Lk~ele~~~~kk-~~LEa~a~e~ekk~~el~~~le~Lek~~~- 168 (321)
.--.++-.-+......-+++++.+.+=++.+.+.+..=...+.....-+ .+-..|-.+-.+.++++..+.+.|.+..+
T Consensus 122 ~~v~~~~~~~~~~~~~e~~q~~~LekAl~~~~~i~~~E~~~l~~L~~AL~kE~~~Rt~dE~~mv~~yr~ki~aL~~aIe~ 201 (508)
T PF00901_consen 122 EKVYKFMKGQEKVEEEEENQIEILEKALKSYGKIVKEENKQLDRLARALQKESRERTQDERKMVEEYRQKIDALKNAIEV 201 (508)
T ss_pred HHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 169 EQKSKIRKTERALKVAEEEMMRAKFEA 195 (321)
Q Consensus 169 Eqk~~l~elE~~lq~~Eeei~kl~~ea 195 (321)
|++..+++.-++.-.+-.++.+.-++.
T Consensus 202 Er~~m~EEAiqe~~dmsaeVlE~AaeE 228 (508)
T PF00901_consen 202 EREGMQEEAIQEIADMSAEVLEHAAEE 228 (508)
T ss_pred HHhhHHHHHHHHHhcccHHHHHHHhhh
No 477
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=50.50 E-value=1.5e+02 Score=26.43 Aligned_cols=80 Identities=15% Similarity=0.257 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 108 AEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEE 187 (321)
Q Consensus 108 eeq~~~~~~RireL~k~Ie~Lk~ele~~~~kk~~LEa~a~e~ekk~~el~~~le~Lek~~~Eqk~~l~elE~~lq~~Eee 187 (321)
.+..+.+...+..|...|...+......- .+|..-+..+.+-...+......+.....-....|.+++..+..+...
T Consensus 102 ~~~~~~~~~~i~~L~~~i~~~q~~~~~~i---~~L~~f~~~l~~D~~~l~~~~~~l~~~l~~~~g~I~~L~~~I~~~~~~ 178 (184)
T PF05791_consen 102 QKDKEDLKEIIEDLQDQIQKNQDKVQALI---NELNDFKDKLQKDSRNLKTDVDELQSILAGENGDIPQLQKQIENLNEE 178 (184)
T ss_dssp HT-HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHTGG
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhHHHHHHHHhcccCCHHHHHHHHHHHHHH
Q ss_pred HHH
Q 020809 188 MMR 190 (321)
Q Consensus 188 i~k 190 (321)
|.+
T Consensus 179 I~~ 181 (184)
T PF05791_consen 179 IKK 181 (184)
T ss_dssp G-G
T ss_pred HHh
No 478
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=50.34 E-value=3e+02 Score=28.16 Aligned_cols=195 Identities=15% Similarity=0.173 Sum_probs=0.0
Q ss_pred HhhhhhhcccCCCCCCc-ccccCCCCchHHHHHHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 16 ILTAADVSIQGEDVPPL-TASDAVDSSPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQK 94 (321)
Q Consensus 16 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~el~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~ 94 (321)
.+++...+......+.. +............++..++..+.-+.+.-+.-..++...-..|...-+.+....-....--+
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~lrrdLavlRQ~~~~~~~~~~~sm~~i~~k~~~~k~~~~~~~~~s~ 204 (426)
T smart00806 125 PAASPSPVLASSSSAISLANNPDKLNKEQRAELKSLQRELAVLRQTHNSFFTEIKESIKDILEKIDKFKSSSLSASGSSN 204 (426)
T ss_pred ccCCCCcccccccccccccCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcc
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH---------
Q 020809 95 ELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQ-----KEKEALEARAIEAEKKISDLSAKL--------- 160 (321)
Q Consensus 95 eI~~~qk~~~~~~eeq~~~~~~RireL~k~Ie~Lk~ele~~~-----~kk~~LEa~a~e~ekk~~el~~~l--------- 160 (321)
.-.-. . +...+.+..+.+=+|+.+|+..|+.|+++...+- .+....-.....+.+.+..++.-+
T Consensus 205 R~y~e-~-~k~kL~~~Sd~lltkVDDLQD~vE~LRkDV~~RgVRp~~~qLe~v~kdi~~a~keL~~m~~~i~~eKP~WkK 282 (426)
T smart00806 205 RAYVE-S-SKKKLSEDSDSLLTKVDDLQDIIEALRKDVAQRGVRPSKKQLETVQKELETARKELKKMEEYIDIEKPIWKK 282 (426)
T ss_pred hHHHH-H-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcChHHHH
Q ss_pred ---HHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccCc-hh
Q 020809 161 ---EKLQKINDE------QKSKIRKTERALKVAEEEMMRAKFEATSRSKELTEVHSAWL-PP 212 (321)
Q Consensus 161 ---e~Lek~~~E------qk~~l~elE~~lq~~Eeei~kl~~ea~~~a~ql~e~~g~~l-~P 212 (321)
..|+++.+| |...+..|..++..+.+...-.+.-.....+.-...++... .|
T Consensus 283 iWE~EL~~VcEEqqfL~lQedL~~DL~dDL~ka~eTf~lVeq~~~eQ~k~~~~~~~~~~~l~ 344 (426)
T smart00806 283 IWEAELDKVCEEQQFLTLQEDLIADLKEDLEKAEETFDLVEQCCEEQEKGPSKNRNKPVSLP 344 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccccCCCccCC
No 479
>PF05064 Nsp1_C: Nsp1-like C-terminal region; InterPro: IPR007758 The NSP1-like protein appears to be an essential component of the nuclear pore complex, for example preribosome nuclear export requires the Nup82p-Nup159p-Nsp1p complex. The C-terminal of Nsp1 is involved in binding Nup82 [], probably via coiled-coil formation [, ]. The family is related to the rotavirus nonstructural protein NSP1 which is the least conserved protein in the rotavirus genome. Its function in the replication process is not fully understood.; GO: 0017056 structural constituent of nuclear pore, 0005643 nuclear pore; PDB: 3T97_C.
Probab=50.28 E-value=12 Score=30.97 Aligned_cols=87 Identities=23% Similarity=0.371 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 48 DQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDN 127 (321)
Q Consensus 48 ~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~qk~~~~~~eeq~~~~~~RireL~k~Ie~ 127 (321)
..+..-|+.....+++-.+.....-..++.-...|-+-..+|..|.+++...+. .+..++...+.....=++|...++.
T Consensus 18 k~Leeiin~W~~eLe~q~k~F~~qA~~V~~wDr~Lv~n~~~I~~L~~~v~~~~~-~Q~~ld~~L~~ie~qQ~eLe~~L~~ 96 (116)
T PF05064_consen 18 KTLEEIINKWNKELEEQEKEFNEQATQVNAWDRQLVENGEKISKLYSEVQKAES-EQKRLDQELDFIEAQQKELEELLDP 96 (116)
T ss_dssp -------------------------------TCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHCHHHHHCC
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHH
Q 020809 128 LKKESEKQ 135 (321)
Q Consensus 128 Lk~ele~~ 135 (321)
|++.++.+
T Consensus 97 lE~~~~~l 104 (116)
T PF05064_consen 97 LEKQVEKL 104 (116)
T ss_dssp CCCTT---
T ss_pred HHHHHHHH
No 480
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=50.18 E-value=3e+02 Score=28.21 Aligned_cols=152 Identities=16% Similarity=0.146 Sum_probs=0.0
Q ss_pred CchHHHHHHHHHHHHHHHH-HhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 020809 40 SSPLKIELDQLKSKIRSLE-SHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARA 118 (321)
Q Consensus 40 ~~~l~~el~qlk~ki~~Le-s~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~qk~~~~~~eeq~~~~~~Ri 118 (321)
...++.+.-.++.-+.+-+ -....+.+.|+.++.+-.-.+..++.+..+--+|.+.++.-|..-...+=.++++++..-
T Consensus 138 l~qLr~ek~~lEq~leqeqef~vnKlm~ki~Klen~t~~kq~~leQLRre~V~lentlEQEqEalvN~LwKrmdkLe~ek 217 (552)
T KOG2129|consen 138 LKQLRHEKLPLEQLLEQEQEFFVNKLMNKIRKLENKTLLKQNTLEQLRREAVQLENTLEQEQEALVNSLWKRMDKLEQEK 217 (552)
T ss_pred HHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHH-------------------------------HHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHH
Q 020809 119 DELEKQ-------------------------------IDNLKKESEKQQKEK--------EALEARAIEAEKKISDLSAK 159 (321)
Q Consensus 119 reL~k~-------------------------------Ie~Lk~ele~~~~kk--------~~LEa~a~e~ekk~~el~~~ 159 (321)
|-|.+. |+.|+++++..+... .++-..+.+-..-.++....
T Consensus 218 r~Lq~KlDqpvs~p~~prdia~~~~~~gD~a~~~~~hi~~l~~EveRlrt~l~~Aqk~~~ek~~qy~~Ee~~~reen~rl 297 (552)
T KOG2129|consen 218 RYLQKKLDQPVSTPSLPRDIAKIPDVHGDEAAAEKLHIDKLQAEVERLRTYLSRAQKSYQEKLMQYRAEEVDHREENERL 297 (552)
T ss_pred HHHHHHhcCcccCCCchhhhhcCccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 160 LEKLQKINDEQKSKIRKTERALKVAEEEMMRA 191 (321)
Q Consensus 160 le~Lek~~~Eqk~~l~elE~~lq~~Eeei~kl 191 (321)
...|...+...++.-+.+.....-+|+--++.
T Consensus 298 QrkL~~e~erRealcr~lsEsesslemdeery 329 (552)
T KOG2129|consen 298 QRKLINELERREALCRMLSESESSLEMDEERY 329 (552)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
No 481
>PRK10869 recombination and repair protein; Provisional
Probab=49.98 E-value=3.3e+02 Score=28.56 Aligned_cols=132 Identities=11% Similarity=0.099 Sum_probs=0.0
Q ss_pred HhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 59 SHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKE 138 (321)
Q Consensus 59 s~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~qk~~~~~~eeq~~~~~~RireL~k~Ie~Lk~ele~~~~k 138 (321)
+..-..-..+...|..+...-..+.+....+..+..++... .....--.++.+..+.|+..|++.-.++...++++-..
T Consensus 247 ~~~~~~l~~~~~~d~~~~~~~~~l~~~~~~l~~~~~~l~~~-~~~~~~dp~~l~~ie~Rl~~l~~L~rKyg~~~~~~~~~ 325 (553)
T PRK10869 247 YSAKQLLSELIGMDSKLSGVLDMLEEALIQIQEASDELRHY-LDRLDLDPNRLAELEQRLSKQISLARKHHVSPEELPQH 325 (553)
T ss_pred HHHHHHHHHHhhhCHhHHHHHHHHHHHHHHHHHHHHHHHHH-HhhcCCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 139 KEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRA 191 (321)
Q Consensus 139 k~~LEa~a~e~ekk~~el~~~le~Lek~~~Eqk~~l~elE~~lq~~Eeei~kl 191 (321)
.+.++.+...++..-..+.....++.+...+....=..+-...+.+-..+.+.
T Consensus 326 ~~~l~~eL~~L~~~e~~l~~Le~e~~~l~~~l~~~A~~LS~~R~~aA~~l~~~ 378 (553)
T PRK10869 326 HQQLLEEQQQLDDQEDDLETLALAVEKHHQQALETAQKLHQSRQRYAKELAQL 378 (553)
T ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 482
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=49.90 E-value=63 Score=32.32 Aligned_cols=56 Identities=23% Similarity=0.408 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 42 PLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQK 101 (321)
Q Consensus 42 ~l~~el~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~qk 101 (321)
+...-++.++.++..++..++++...+.... ...+.+.++..++.+++.+|...+.
T Consensus 239 ~~~~~~~~l~~~~~~~~~~i~~l~~~l~~~~----k~~~k~~~~~~q~~~~~k~~~~~~~ 294 (406)
T PF02388_consen 239 NGKEYLESLQEKLEKLEKEIEKLEEKLEKNP----KKKNKLKELEEQLASLEKRIEEAEE 294 (406)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHH-T----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc----chhhHHHHHHHHHHHHHHHHHHHHH
No 483
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=49.78 E-value=48 Score=36.70 Aligned_cols=136 Identities=16% Similarity=0.185 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 020809 41 SPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADE 120 (321)
Q Consensus 41 ~~l~~el~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~qk~~~~~~eeq~~~~~~Rire 120 (321)
+.+.+++...+......+.+..+...-+..++..++.+.-.+......|..+..+|+.++. ...-++..+-....|+..
T Consensus 459 ~e~~~~~s~s~~~~~~~~~k~~~~~~~~s~~~~~~~~~~~~~~~~~~ei~~~~~~ln~~~q-q~~~l~~~v~~~~~~ve~ 537 (847)
T KOG0998|consen 459 NELDAQKSQSKEKFSTTRKKKQEEPQWISSLDNDLNLLPLQLSNDNREISSLEKELNELQQ-QLSVLEGSVKAIESQVEN 537 (847)
T ss_pred hhhhhhhhHHHhhhhhhhhhhhccccccccccchhhhcccccccchhhHHHHHHHHhhhHH-HHhHHhhhhhhhhhhhhh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 121 LEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKT 177 (321)
Q Consensus 121 L~k~Ie~Lk~ele~~~~kk~~LEa~a~e~ekk~~el~~~le~Lek~~~Eqk~~l~el 177 (321)
|.+.+..+..+......+...|+............+..............+..+...
T Consensus 538 l~~~L~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~k~~n~~~~~s~~~l~~~ 594 (847)
T KOG0998|consen 538 LQKELLDLIYEMADTRSKSTLLDDSFKVGMELFEQLLKGSKLVNGKDQNSSTELAGY 594 (847)
T ss_pred hHhHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhhhhhccccccccchhhhhhh
No 484
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=49.58 E-value=54 Score=36.30 Aligned_cols=124 Identities=15% Similarity=0.197 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 020809 41 SPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADE 120 (321)
Q Consensus 41 ~~l~~el~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~qk~~~~~~eeq~~~~~~Rire 120 (321)
......++++...+...+........+..+.-..+..+...++.+...+.....+|.+..+ ....++.+.+.+.--+..
T Consensus 452 ~~~~~k~~e~~~~~s~s~~~~~~~~~k~~~~~~~~s~~~~~~~~~~~~~~~~~~ei~~~~~-~ln~~~qq~~~l~~~v~~ 530 (847)
T KOG0998|consen 452 DTVQDKLNELDAQKSQSKEKFSTTRKKKQEEPQWISSLDNDLNLLPLQLSNDNREISSLEK-ELNELQQQLSVLEGSVKA 530 (847)
T ss_pred chhhhhhhhhhhhhhHHHhhhhhhhhhhhccccccccccchhhhcccccccchhhHHHHHH-HHhhhHHHHhHHhhhhhh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 121 LEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQK 165 (321)
Q Consensus 121 L~k~Ie~Lk~ele~~~~kk~~LEa~a~e~ekk~~el~~~le~Lek 165 (321)
....|+.+.+.+.....+...+...-..++..........+.+.+
T Consensus 531 ~~~~ve~l~~~L~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~ 575 (847)
T KOG0998|consen 531 IESQVENLQKELLDLIYEMADTRSKSTLLDDSFKVGMELFEQLLK 575 (847)
T ss_pred hhhhhhhhHhHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhh
No 485
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=49.40 E-value=3.2e+02 Score=28.28 Aligned_cols=211 Identities=22% Similarity=0.249 Sum_probs=0.0
Q ss_pred cccCCCCchHHHHHHHHHHHHHHHHHhHHHHHHhhhcH----------HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 34 ASDAVDSSPLKIELDQLKSKIRSLESHIDEKTQELKGK----------DEVVAQK-EKAIQDKSERIVSLQKELSSLQKK 102 (321)
Q Consensus 34 ~~~~~~~~~l~~el~qlk~ki~~Les~i~e~~~eLk~k----------d~~I~q~-ek~i~e~~~~I~~Lq~eI~~~qk~ 102 (321)
+.++.+++.+..++..++-.+.+++..++....++.+. ......+ ...+..+..++..++..|..-...
T Consensus 98 ~~~~~~~~sl~~e~a~lk~~l~e~~~El~~l~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~sL~ekl~lld~al~~~~~~ 177 (511)
T PF09787_consen 98 ASSAKSSDSLSSELAVLKIRLQELDQELRRLRRQLEELQNEKSRILSDESTVSRLQNGAPRSLQEKLSLLDEALKREDGN 177 (511)
T ss_pred cccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCcc
Q ss_pred ----------hhHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH
Q 020809 103 ----------ETLNAA-------------EQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARA-------IEAEKK 152 (321)
Q Consensus 103 ----------~~~~~e-------------eq~~~~~~RireL~k~Ie~Lk~ele~~~~kk~~LEa~a-------~e~ekk 152 (321)
.....+ ..+-....+..++...++-++...+..+ .++.... ...+++
T Consensus 178 ~~~~~~~fl~rtl~~e~~~~~L~~~~~A~~~~~~~l~~~~e~~~~l~l~~~~~~~~~---~el~~Yk~kA~~iLq~kEkl 254 (511)
T PF09787_consen 178 AITAVVEFLKRTLKKEIERQELEERPKALRHYIEYLRESGELQEQLELLKAEGESEE---AELQQYKQKAQRILQSKEKL 254 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH---HHHHHHHHHHHHHhcCHHHH
Q ss_pred HHHHHH---H-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh---hhhhccCchhHHH
Q 020809 153 ISDLSA---K-----------LEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSRSKEL---TEVHSAWLPPWLA 215 (321)
Q Consensus 153 ~~el~~---~-----------le~Lek~~~Eqk~~l~elE~~lq~~Eeei~kl~~ea~~~a~ql---~e~~g~~l~Pwla 215 (321)
+..|.. . ++.+.......+..++.++..+.....++..++.+........ ......-+-|-+.
T Consensus 255 I~~LK~~~~~~~~~~~~~~~el~~l~~E~~~~~ee~~~l~~Qi~~l~~e~~d~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (511)
T PF09787_consen 255 IESLKEGCLEEGFDSSTNSIELEELKQERDHLQEEIQLLERQIEQLRAELQDLEAQLEGEQESFREQPQELSQQLEPELT 334 (511)
T ss_pred HHHHHhcccccccccccchhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhc
Q ss_pred H-----HHHHHHHHHHhHHHhhCcchHHHHHHHHHHH
Q 020809 216 V-----HLLQCQSLIETHWNAHGKPAMDVAIQKALEK 247 (321)
Q Consensus 216 ~-----~~~~~~~~~~~~~~~hg~p~~~~~~~~~~~k 247 (321)
+ .+-.+......--...+.|+--.+..+-+|+
T Consensus 335 ~e~e~~l~~~el~~~~ee~~~~~s~~~~k~~~ke~E~ 371 (511)
T PF09787_consen 335 TEAELRLYYQELYHYREELSRQKSPLQLKLKEKESEI 371 (511)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHH
No 486
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=49.19 E-value=97 Score=30.42 Aligned_cols=68 Identities=10% Similarity=0.195 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 020809 47 LDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAH 115 (321)
Q Consensus 47 l~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~qk~~~~~~eeq~~~~~ 115 (321)
|.+|+.++..+..++.++.......+++++.....+.+++.++..+..+.+..+. ...+++......+
T Consensus 1 l~el~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 68 (378)
T TIGR01554 1 LSELKEQREEIVAEIRSLLDKAEKLEKELTAAALEKEELETDVEKLKEEIKLLED-AIADLEKVTEETK 68 (378)
T ss_pred ChhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhhhhc
No 487
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=49.16 E-value=1.8e+02 Score=29.45 Aligned_cols=73 Identities=25% Similarity=0.353 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 70 GKDEVVAQKEKAIQDKSERIVSLQKELSSLQKK-----ETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEAL 142 (321)
Q Consensus 70 ~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~qk~-----~~~~~eeq~~~~~~RireL~k~Ie~Lk~ele~~~~kk~~L 142 (321)
.+...+..+..++..+..++..++..|..+++. -..+..+....+......|...+..+..++..++......
T Consensus 331 ~l~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 331 ELKEKLEELEEELEELKEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 488
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=48.99 E-value=1.4e+02 Score=23.86 Aligned_cols=74 Identities=23% Similarity=0.373 Sum_probs=0.0
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 69 KGKDEVVAQKEKAIQDKSERIVSL-----QKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEAL 142 (321)
Q Consensus 69 k~kd~~I~q~ek~i~e~~~~I~~L-----q~eI~~~qk~~~~~~eeq~~~~~~RireL~k~Ie~Lk~ele~~~~kk~~L 142 (321)
...+..=.+.+..++.+-.++..+ +..+..+.+.=+...+.++..+...+..|.++++.|+.+++..+.++..|
T Consensus 4 ~~~~~~~~ev~~~ve~vA~eLh~~YssKHE~KV~~LKksYe~rwek~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek~~L 82 (87)
T PF12709_consen 4 KKLEESQKEVEKAVEKVARELHALYSSKHETKVKALKKSYEARWEKKVDELENENKALKRENEQLKKKLDTEREEKQEL 82 (87)
T ss_pred hHHhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 489
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=48.91 E-value=83 Score=22.84 Aligned_cols=40 Identities=25% Similarity=0.237 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHH
Q 020809 51 KSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIV 90 (321)
Q Consensus 51 k~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~ 90 (321)
+..+..|+..+..+..+...+...+..+...+..+..+++
T Consensus 25 k~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~~ 64 (64)
T PF00170_consen 25 KQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSENH 64 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
No 490
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=48.80 E-value=2.8e+02 Score=27.40 Aligned_cols=168 Identities=22% Similarity=0.201 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hhHHHHHHHHHHHHHHHH
Q 020809 49 QLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKK--------ETLNAAEQVDKAHARADE 120 (321)
Q Consensus 49 qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~qk~--------~~~~~eeq~~~~~~Rire 120 (321)
.|+.--......++....+..+....++...-.++.+-.+...|+.+|..- .. .....++=...+...+..
T Consensus 2 ~Lk~~nR~~~~~~~~~k~~t~e~k~~vD~~~LqLqNl~YE~~hL~kEI~~C-~~F~s~~~~i~Lv~~eEF~~~ap~~~~~ 80 (355)
T PF09766_consen 2 ALKQLNRAAQFRIKKAKDETAEAKQEVDALHLQLQNLLYEKSHLQKEIKKC-LDFKSKYEDIELVPVEEFYAKAPEEISD 80 (355)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHHH-hccCCCCCCCcCccHHHHHHhChhhccc
Q ss_pred HHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 121 LEKQ--------IDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAK 192 (321)
Q Consensus 121 L~k~--------Ie~Lk~ele~~~~kk~~LEa~a~e~ekk~~el~~~le~Lek~~~Eqk~~l~elE~~lq~~Eeei~kl~ 192 (321)
.+.. +.+|.-++.+++ .+..+++++......+.+.+...+..|+.+...+..+..-..-++
T Consensus 81 ~~~~~~~~H~lml~RL~~EL~~Rk-----------~L~~~~~el~~~k~~l~~~~~~k~~~L~~l~~~L~~l~~a~~plq 149 (355)
T PF09766_consen 81 PELTEDDEHQLMLARLEFELEQRK-----------RLEEQLKELEQRKKKLQQENKKKKKFLDSLPPQLKSLKKAAKPLQ 149 (355)
T ss_pred cccCCCChHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q ss_pred HHHhhhhhhhhhhh--ccCchhHHHHHHHHHHHHHHhH
Q 020809 193 FEATSRSKELTEVH--SAWLPPWLAVHLLQCQSLIETH 228 (321)
Q Consensus 193 ~ea~~~a~ql~e~~--g~~l~Pwla~~~~~~~~~~~~~ 228 (321)
......-......+ -..|||=|-+=|..+......+
T Consensus 150 ~~l~~~~~~~~~~~~~a~~LP~PLyvLY~ql~ay~ea~ 187 (355)
T PF09766_consen 150 EYLGLPHTKKRKQHELAELLPPPLYVLYSQLQAYQEAF 187 (355)
T ss_pred HHhCCCccchhhhHHHHHhCCccHHHHHHHHHHHHHHh
No 491
>PRK00708 sec-independent translocase; Provisional
Probab=48.75 E-value=2.2e+02 Score=26.25 Aligned_cols=78 Identities=10% Similarity=0.259 Sum_probs=0.0
Q ss_pred CchhHHHHHHHHHHHHhhh------hhhcccCCCCCCcccccCCCCchHHHHHHHHHHHHHHHHHhHHHHHH--hhhcHH
Q 020809 1 MAASKLVIFSLFFALILTA------ADVSIQGEDVPPLTASDAVDSSPLKIELDQLKSKIRSLESHIDEKTQ--ELKGKD 72 (321)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~l~~el~qlk~ki~~Les~i~e~~~--eLk~kd 72 (321)
++++-||++++++++|||. +.. +-+=+..++.-.++.++++++... +++++.
T Consensus 4 IG~~ELlvI~vVaLvV~GPkrLP~~~R~--------------------lGk~v~k~R~~a~e~r~~~~e~~~~~eldd~~ 63 (209)
T PRK00708 4 IGWSELLVIAIVLIVVVGPKDLPPMLRA--------------------FGKMTARMRKMAGEFRRQFDEALREAELDDVR 63 (209)
T ss_pred ccHHHHHHHHHHHHhhcCchHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q ss_pred HHHHHHHH-----HHHHHHHHHHHHHHHHHH
Q 020809 73 EVVAQKEK-----AIQDKSERIVSLQKELSS 98 (321)
Q Consensus 73 ~~I~q~ek-----~i~e~~~~I~~Lq~eI~~ 98 (321)
..+...+. .+.+.-+.+...-++|.+
T Consensus 64 k~~~~~~~ldp~~~l~~~~~~l~~~~~~i~~ 94 (209)
T PRK00708 64 QTISDARSLNPRTSLRQAMNPLRQAGNEIKS 94 (209)
T ss_pred HHHHHHHhcChHHHHHHHHHHHHHHHHHHHh
No 492
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=48.72 E-value=3.3e+02 Score=28.25 Aligned_cols=154 Identities=13% Similarity=0.187 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH--
Q 020809 43 LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADE-- 120 (321)
Q Consensus 43 l~~el~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~qk~~~~~~eeq~~~~~~Rire-- 120 (321)
+...+++|-...-..-=+..++.+-++.+...++..++.+.+...+-..|+-++......=-.-.+......+.|-+-
T Consensus 367 Lk~niEeLIedKY~viLEKnd~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry~~eiQqKnksvs 446 (527)
T PF15066_consen 367 LKENIEELIEDKYRVILEKNDIEKTLQNLQEALANTQKHLQESRNEKETLQLELKKIKANYVHLQERYMTEIQQKNKSVS 446 (527)
T ss_pred HHHHHHHHHHhHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHH
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 121 ----LEKQIDNLKKESEKQQKEKEALEARA-IEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEA 195 (321)
Q Consensus 121 ----L~k~Ie~Lk~ele~~~~kk~~LEa~a-~e~ekk~~el~~~le~Lek~~~Eqk~~l~elE~~lq~~Eeei~kl~~ea 195 (321)
+.+.+-....+++....-+.+||... ..++-...+-...-...-.-..+-++.-.+...+.+.+...+.++-++.
T Consensus 447 qclEmdk~LskKeeeverLQ~lkgelEkat~SALdlLkrEKe~~EqefLslqeEfQk~ekenl~ERqkLKs~leKLvaqv 526 (527)
T PF15066_consen 447 QCLEMDKTLSKKEEEVERLQQLKGELEKATTSALDLLKREKETREQEFLSLQEEFQKHEKENLEERQKLKSRLEKLVAQV 526 (527)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhc
Q ss_pred h
Q 020809 196 T 196 (321)
Q Consensus 196 ~ 196 (321)
+
T Consensus 527 k 527 (527)
T PF15066_consen 527 K 527 (527)
T ss_pred C
No 493
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=48.56 E-value=2.8e+02 Score=27.45 Aligned_cols=142 Identities=19% Similarity=0.255 Sum_probs=0.0
Q ss_pred CCCCCCc-ccccCCCCchHHHHHHHHHHHHHHH-HHhHHHHHHhhhcHHHHHHHHHHHHHHH------HHHHHHHHHHHH
Q 020809 26 GEDVPPL-TASDAVDSSPLKIELDQLKSKIRSL-ESHIDEKTQELKGKDEVVAQKEKAIQDK------SERIVSLQKELS 97 (321)
Q Consensus 26 ~~~~~~~-~~~~~~~~~~l~~el~qlk~ki~~L-es~i~e~~~eLk~kd~~I~q~ek~i~e~------~~~I~~Lq~eI~ 97 (321)
|.+++.. ..........+-.-++.|..++.-| ...++.+..+++.+-.+++.+...-... +.+|+.|=.-+.
T Consensus 226 G~~~~~~~~l~~~~~~~~l~~~l~~L~~~lslL~~~~Ld~i~~rl~~L~~~~~~l~~~~~~~~~~~~~e~KI~eLy~~l~ 305 (388)
T PF04912_consen 226 GIDSDKMSSLDSDTSSSPLLPALNELERQLSLLDPAKLDSIERRLKSLLSELEELAEKRKEAKEDAEQESKIDELYEILP 305 (388)
T ss_pred CCCccccccccccCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhccccccccccchhHHHHHHHHHH
Q ss_pred HHHHH------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 98 SLQKK------------ETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQK 165 (321)
Q Consensus 98 ~~qk~------------~~~~~eeq~~~~~~RireL~k~Ie~Lk~ele~~~~kk~~LEa~a~e~ekk~~el~~~le~Lek 165 (321)
....= ....+=+....+..++..|+.....+..++...+.-+..++.. ...-+..++.
T Consensus 306 ~~~~~~~~lP~lv~RL~tL~~lH~~a~~~~~~l~~le~~q~~l~~~l~~~~~~L~~ve~~----------~~~N~~~i~~ 375 (388)
T PF04912_consen 306 RWDPYAPSLPSLVERLKTLKSLHEEAAEFSQTLSELESQQSDLQSQLKKWEELLNKVEEK----------FKENMETIEK 375 (388)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHH
Q ss_pred HHHHHHHHHHHH
Q 020809 166 INDEQKSKIRKT 177 (321)
Q Consensus 166 ~~~Eqk~~l~el 177 (321)
.....+.+|..|
T Consensus 376 n~~~le~Ri~~L 387 (388)
T PF04912_consen 376 NVKKLEERIAKL 387 (388)
T ss_pred HHHHHHHHHhcc
No 494
>PF15456 Uds1: Up-regulated During Septation
Probab=48.49 E-value=1.7e+02 Score=24.72 Aligned_cols=79 Identities=19% Similarity=0.236 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 116 ARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDL-----------SAKLEKLQKINDEQKSKIRKTERALKVA 184 (321)
Q Consensus 116 ~RireL~k~Ie~Lk~ele~~~~kk~~LEa~a~e~ekk~~el-----------~~~le~Lek~~~Eqk~~l~elE~~lq~~ 184 (321)
..|.+|++++..|...++..+.+.. ++.+.+++-..+..+ ..-..+.+....+-...++++...+-.+
T Consensus 22 eEVe~LKkEl~~L~~R~~~lr~kl~-le~k~RdAa~sl~~l~~~~~~~~~~~~~~~~~~eeel~~~~rk~ee~~~eL~~l 100 (124)
T PF15456_consen 22 EEVEELKKELRSLDSRLEYLRRKLA-LESKIRDAAHSLSRLYSSSSRRARFSRESSLKAEEELAESDRKCEELAQELWKL 100 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCCccccCCCcchHHHHHHHHHHHHhhHHHHHHHHHHH
Q ss_pred HHHHHHHHHHH
Q 020809 185 EEEMMRAKFEA 195 (321)
Q Consensus 185 Eeei~kl~~ea 195 (321)
+....+.+...
T Consensus 101 e~R~~~~~~rL 111 (124)
T PF15456_consen 101 ENRLAEVRQRL 111 (124)
T ss_pred HHHHHHHHHHH
No 495
>PLN02320 seryl-tRNA synthetase
Probab=48.40 E-value=1.5e+02 Score=30.83 Aligned_cols=95 Identities=11% Similarity=0.150 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHH
Q 020809 46 ELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKK-ETLNAAEQVDKAHARADELEKQ 124 (321)
Q Consensus 46 el~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~qk~-~~~~~eeq~~~~~~RireL~k~ 124 (321)
.++-++.........+....-.+. =+.|-.+..+...+..+++.|..+.+.+-++ +.....+..+.+..+++.|+++
T Consensus 68 D~k~ir~n~~~v~~~l~~R~~~~~--vd~l~~ld~~~r~~~~~~~~lr~ern~~sk~i~~~~~~~~~~~l~~~~k~lk~~ 145 (502)
T PLN02320 68 DFKWIRDNKEAVAINIRNRNSNAN--LELVLELYENMLALQKEVERLRAERNAVANKMKGKLEPSERQALVEEGKNLKEG 145 (502)
T ss_pred CHHHHHhCHHHHHHHHHhcCCCcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 020809 125 IDNLKKESEKQQKEKEAL 142 (321)
Q Consensus 125 Ie~Lk~ele~~~~kk~~L 142 (321)
|..|..++.....+...+
T Consensus 146 i~~le~~~~~~~~~l~~~ 163 (502)
T PLN02320 146 LVTLEEDLVKLTDELQLE 163 (502)
T ss_pred HHHHHHHHHHHHHHHHHH
No 496
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=48.28 E-value=3.3e+02 Score=28.04 Aligned_cols=147 Identities=14% Similarity=0.108 Sum_probs=0.0
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 69 KGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIE 148 (321)
Q Consensus 69 k~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~qk~~~~~~eeq~~~~~~RireL~k~Ie~Lk~ele~~~~kk~~LEa~a~e 148 (321)
+++..++..++..++.+..+-..|-+.|..+ +..-..+++-...+-.++..|..++-..++....+...+.--+.+...
T Consensus 293 Reasle~Enlqmr~qqleeentelRs~~arl-ksl~dklaee~qr~sd~LE~lrlql~~eq~l~~rm~d~Lrrfq~ekea 371 (502)
T KOG0982|consen 293 REASLEKENLQMRDQQLEEENTELRSLIARL-KSLADKLAEEDQRSSDLLEALRLQLICEQKLRVRMNDILRRFQEEKEA 371 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccCchhHHHH
Q 020809 149 AEKKISDLSAKLEKLQKINDEQK--------SKIRKTERALKVAEEEMMRAKFEATSRSKELTEVHSAWLPPWLAV 216 (321)
Q Consensus 149 ~ekk~~el~~~le~Lek~~~Eqk--------~~l~elE~~lq~~Eeei~kl~~ea~~~a~ql~e~~g~~l~Pwla~ 216 (321)
.+..+.++...+..++--+-... +..-++++..+.+...-..+.........++.--+--|+--|+++
T Consensus 372 tqELieelrkelehlr~~kl~~a~p~rgrsSaRe~eleqevkrLrq~nr~l~eqneelngtilTls~q~lkn~ha~ 447 (502)
T KOG0982|consen 372 TQELIEELRKELEHLRRRKLVLANPVRGRSSAREIELEQEVKRLRQPNRILSEQNEELNGTILTLSTQFLKNWHAT 447 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccCchhHHHHHHHHHHHHhccccchhhhhhhhhhhhhhhHHHHHHHHHHHH
No 497
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=48.13 E-value=2.5e+02 Score=26.70 Aligned_cols=108 Identities=19% Similarity=0.313 Sum_probs=0.0
Q ss_pred HHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 62 DEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKK---ETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKE 138 (321)
Q Consensus 62 ~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~qk~---~~~~~eeq~~~~~~RireL~k~Ie~Lk~ele~~~~k 138 (321)
..+...|...|..+...++.+.....+...++.+...++.. ....++.+...++.+++.|...++.-+. .-....
T Consensus 186 ~~~~~~ilq~d~~L~~~ek~~~~~~~k~e~~e~e~~~l~e~~~~~~~~le~~~~~~ee~~~~L~ekme~e~~--~~~~e~ 263 (297)
T PF02841_consen 186 ESMENSILQADQQLTEKEKEIEEEQAKAEAAEKEKEKLEEKQKEQEQMLEQQERSYEEHIKQLKEKMEEERE--QLLQEQ 263 (297)
T ss_dssp HHHHHHHHHH-TTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 020809 139 KEALEARAIEAEKKISD-LSAKLEKLQKINDEQK 171 (321)
Q Consensus 139 k~~LEa~a~e~ekk~~e-l~~~le~Lek~~~Eqk 171 (321)
...++.+...-...+.+ .+.....|++.....+
T Consensus 264 e~~l~~k~~eq~~~l~e~~~~~~~~l~~ei~~L~ 297 (297)
T PF02841_consen 264 ERLLEQKLQEQEELLKEGFQEEAEKLQKEIQDLQ 297 (297)
T ss_dssp HHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
No 498
>PF11570 E2R135: Coiled-coil receptor-binding R-domain of colicin E2; InterPro: IPR024566 Bacteriocins are protein antibiotics that kill bacteria closely related to the producing species. Colicins are a subgroup of bacteriocins that are produced by and target Escherichia coli. The lethal action of most colicins is exerted either by formation of a pore in the cytoplasmic membrane of the target cell, or by an enzymatic nuclease digestion mechanism. Most colicins are able to translocate the outer membrane by a two-receptor system, where one receptor is used for the initial binding and the second for translocation. The initial binding is to cell surface receptors such as the porins OmpF, FepA, BtuB, Cir and FhuA. The presence of specific periplasmic proteins, such as TolA, TolB, TolC, or TonB, are required for translocation across the membrane []. Colicins are composed of domains with distinct functional roles. In general they contain a central R (receptor) domain that mediates receptor binding, an N-terminal T (translocation) domain that mediates translocation of the protein from the outer membrane receptor to the colicin's target within the cell, and a C-terminal C (catalytic) domain that performs the catalytic cleavage []. This entry represents the central R domain found in colicin-E2 and other colicins.; PDB: 2YSU_B 1UJW_B 2B5U_C 1JCH_A.
Probab=48.11 E-value=1.8e+02 Score=24.97 Aligned_cols=111 Identities=16% Similarity=0.282 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH--------------------HHHHHHHHHH
Q 020809 71 KDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADE--------------------LEKQIDNLKK 130 (321)
Q Consensus 71 kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~qk~~~~~~eeq~~~~~~Rire--------------------L~k~Ie~Lk~ 130 (321)
.....+.+..+|..-..+|+.++..+.+... .....-..++.+.+.+++ ....|..++.
T Consensus 6 a~rny~~a~aeL~~a~~~I~~~q~r~a~a~~-~~~~r~seldqA~~~~~eae~k~~~~~a~~P~~~~~~~wqlkvr~a~~ 84 (136)
T PF11570_consen 6 AERNYEAARAELDQADEDIATLQERQASAEQ-ALNGRRSELDQANKKVKEAEIKQDEFFANNPPHEYGRGWQLKVRRAQK 84 (136)
T ss_dssp HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHCCCCTT-TTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHhcccccccCCCccccccHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 131 ESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALK 182 (321)
Q Consensus 131 ele~~~~kk~~LEa~a~e~ekk~~el~~~le~Lek~~~Eqk~~l~elE~~lq 182 (321)
++...+.+...-+.+...++..+......+.........-...+...+..+.
T Consensus 85 dv~nkq~~l~AA~~~l~~~~~el~~~~~al~~A~e~Rkq~eskk~dAenkl~ 136 (136)
T PF11570_consen 85 DVQNKQNKLKAAQKELNAADEELNRIQAALSQAMERRKQKESKKKDAENKLN 136 (136)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhhhhhhccC
No 499
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=48.07 E-value=1.2e+02 Score=27.77 Aligned_cols=97 Identities=21% Similarity=0.273 Sum_probs=0.0
Q ss_pred CCchHHHHHHHHHHHHHHHHHhHHH-HHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 020809 39 DSSPLKIELDQLKSKIRSLESHIDE-KTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHAR 117 (321)
Q Consensus 39 ~~~~l~~el~qlk~ki~~Les~i~e-~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~qk~~~~~~eeq~~~~~~R 117 (321)
|.+.|+.+|.+|..++...+..... ....=....--=.+.+..+.-+..++..+.+ =............+-++.....
T Consensus 97 EevrLkrELa~Le~~l~~~~~~~~~~~~~~~~~~~lvk~e~EqLL~YK~~ql~~~~~-~~~~~~~~l~~v~~Dl~~ie~Q 175 (195)
T PF12761_consen 97 EEVRLKRELAELEEKLSKVEQAAESRRSDTDSKPALVKREFEQLLDYKERQLRELEE-GRSKSGKNLKSVREDLDTIEEQ 175 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhhhc-cCCCCCCCHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 020809 118 ADELEKQIDNLKKESEKQQ 136 (321)
Q Consensus 118 ireL~k~Ie~Lk~ele~~~ 136 (321)
|..|+.-+..-+.+++..+
T Consensus 176 V~~Le~~L~~k~~eL~~L~ 194 (195)
T PF12761_consen 176 VDGLESHLSSKKQELQQLR 194 (195)
T ss_pred HHHHHHHHHHHHHHHHHhc
No 500
>cd07599 BAR_Rvs167p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 167 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 167 (Rvs167p) and Schizosaccharomyces pombe Hob1 (homolog of Bin1). S. cerevisiae Rvs167p plays a role in regulation of the actin cytoskeleton, endocytosis, and sporulation. It forms a heterodimer with another BAR domain protein Rvs161p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. Rvs167p also interacts with the GTPase activating protein (GAP) Gyp5p, which is involved in ER to Golgi vesicle trafficking. BAR domains fo
Probab=47.93 E-value=2.1e+02 Score=25.75 Aligned_cols=171 Identities=19% Similarity=0.211 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHH
Q 020809 41 SPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKS--------------------ERIVSLQKELSSLQ 100 (321)
Q Consensus 41 ~~l~~el~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~--------------------~~I~~Lq~eI~~~q 100 (321)
+.+..+++.+...+..|.........-+...-..-...-..+.++- ..+..+..-+..+.
T Consensus 5 ~~~~~~f~~~e~~~~kL~k~~k~y~~a~~~l~~~~~~~~~~~~~ly~p~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~l~ 84 (216)
T cd07599 5 EELEKDFKSLEKSLKKLIEQSKAFRDSWRSILTHQIAFAKEFAELYDPIVGPKESVGSHPAPESTLARLSRYVKALEELK 84 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCCCCcCcCCCCCcHHHHHHHHHHHHHHHHHH
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 101 KKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERA 180 (321)
Q Consensus 101 k~~~~~~eeq~~~~~~RireL~k~Ie~Lk~ele~~~~kk~~LEa~a~e~ekk~~el~~~le~Lek~~~Eqk~~l~elE~~ 180 (321)
.....+++--....-..+.++...+..+++.|..+..++-..+.....+++ .+..-.+-.......+.++++.
T Consensus 85 ~~~~~~l~~i~~~V~~P~~~~~~~~~~i~k~IkKR~~k~lDyd~~~~k~~k-------~~~~k~~~~~kd~~kl~kae~~ 157 (216)
T cd07599 85 KELLEELEFFEERVILPAKELKKYIKKIRKTIKKRDHKKLDYDKLQNKLNK-------LLQKKKELSLKDEKQLAKLERK 157 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-------HHhcCCCCChhHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhccCchhHHHHHH
Q 020809 181 LKVAEEEMMRAKFEATSRSKELTEVHSAWLPPWLAVHL 218 (321)
Q Consensus 181 lq~~Eeei~kl~~ea~~~a~ql~e~~g~~l~Pwla~~~ 218 (321)
+..+......+-.....-.-.+......|+.||+..-+
T Consensus 158 l~~a~~~y~~lN~~Lk~eLP~l~~~~~~~~~~~~~~~~ 195 (216)
T cd07599 158 LEEAKEEYEALNELLKSELPKLLALADEFLPPLFKSFY 195 (216)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Done!