Query 020809
Match_columns 321
No_of_seqs 147 out of 156
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 08:30:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020809.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020809hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3na7_A HP0958; flagellar bioge 98.5 7.4E-05 2.5E-09 68.7 25.7 164 45-224 18-187 (256)
2 1c1g_A Tropomyosin; contractIl 98.4 0.0003 1E-08 62.0 25.8 55 43-97 4-58 (284)
3 3na7_A HP0958; flagellar bioge 98.0 0.0011 3.7E-08 60.8 22.1 136 43-181 23-166 (256)
4 2v71_A Nuclear distribution pr 97.7 0.0098 3.4E-07 52.4 20.4 130 43-175 22-154 (189)
5 3s84_A Apolipoprotein A-IV; fo 97.6 0.019 6.6E-07 53.2 23.1 83 237-319 167-263 (273)
6 1i84_S Smooth muscle myosin he 97.6 0.00021 7.3E-09 78.5 10.9 61 39-99 858-918 (1184)
7 1i84_S Smooth muscle myosin he 97.6 0.00029 9.8E-09 77.4 11.4 53 44-96 856-908 (1184)
8 3vkg_A Dynein heavy chain, cyt 97.4 0.11 3.6E-06 62.4 31.0 97 140-245 2017-2113(3245)
9 2dfs_A Myosin-5A; myosin-V, in 97.4 0.0049 1.7E-07 67.2 18.4 131 45-186 921-1051(1080)
10 2v71_A Nuclear distribution pr 97.2 0.079 2.7E-06 46.6 20.7 78 106-186 46-123 (189)
11 3s84_A Apolipoprotein A-IV; fo 97.2 0.037 1.3E-06 51.3 19.8 73 248-320 167-253 (273)
12 2dfs_A Myosin-5A; myosin-V, in 97.2 0.012 4.3E-07 64.1 18.1 29 41-69 924-952 (1080)
13 2a01_A Apolipoprotein A-I; fou 97.2 0.0027 9.4E-08 57.8 11.1 101 210-315 141-241 (243)
14 2fxo_A Myosin heavy chain, car 97.0 0.12 4.1E-06 42.5 18.4 59 105-163 65-123 (129)
15 3oja_B Anopheles plasmodium-re 96.9 0.032 1.1E-06 55.9 17.5 38 154-191 540-577 (597)
16 3u1c_A Tropomyosin alpha-1 cha 96.7 0.11 3.9E-06 41.0 15.7 32 47-78 4-35 (101)
17 3r2p_A Apolipoprotein A-I; amp 96.7 0.00097 3.3E-08 58.3 3.9 62 256-321 110-171 (185)
18 2efr_A General control protein 96.6 0.27 9.1E-06 41.9 21.1 113 71-191 26-138 (155)
19 2a01_A Apolipoprotein A-I; fou 96.6 0.0024 8.2E-08 58.2 5.6 87 229-319 137-223 (243)
20 3vkg_A Dynein heavy chain, cyt 96.5 0.22 7.7E-06 59.7 23.1 71 121-191 2012-2082(3245)
21 1gs9_A Apolipoprotein E, APOE4 96.5 0.0021 7.2E-08 55.5 4.6 81 234-318 83-163 (165)
22 3o0z_A RHO-associated protein 96.5 0.35 1.2E-05 41.7 21.5 42 53-94 7-48 (168)
23 3u59_A Tropomyosin beta chain; 96.5 0.17 5.7E-06 39.9 15.2 36 47-82 4-39 (101)
24 1gs9_A Apolipoprotein E, APOE4 96.4 0.0029 9.8E-08 54.7 4.8 68 253-320 69-143 (165)
25 3u1c_A Tropomyosin alpha-1 cha 96.4 0.2 6.8E-06 39.5 15.0 60 41-100 5-64 (101)
26 3tnu_B Keratin, type II cytosk 96.4 0.08 2.7E-06 43.5 13.1 49 108-156 74-122 (129)
27 3oja_B Anopheles plasmodium-re 96.4 0.085 2.9E-06 52.8 15.9 73 126-198 505-577 (597)
28 2lem_A Apolipoprotein A-I; lip 96.3 0.023 7.9E-07 50.7 10.4 87 230-320 115-210 (216)
29 3tnu_A Keratin, type I cytoske 96.3 0.079 2.7E-06 43.7 12.8 111 45-159 17-127 (131)
30 1nfn_A Apolipoprotein E3; lipi 96.2 0.026 8.8E-07 49.7 10.0 106 210-320 82-187 (191)
31 2fxo_A Myosin heavy chain, car 96.2 0.41 1.4E-05 39.2 19.8 33 140-172 86-118 (129)
32 3o0z_A RHO-associated protein 96.1 0.63 2.1E-05 40.1 22.4 120 41-161 9-135 (168)
33 2efr_A General control protein 96.0 0.64 2.2E-05 39.5 24.1 84 106-189 32-115 (155)
34 3u59_A Tropomyosin beta chain; 96.0 0.4 1.4E-05 37.7 14.8 59 41-99 5-63 (101)
35 1nfn_A Apolipoprotein E3; lipi 95.4 0.011 3.6E-07 52.2 3.9 60 258-321 107-166 (191)
36 1deq_A Fibrinogen (alpha chain 95.3 0.67 2.3E-05 44.6 16.3 94 48-146 63-157 (390)
37 3nmd_A CGMP dependent protein 95.2 0.054 1.9E-06 40.4 6.6 47 54-100 21-67 (72)
38 2l7b_A Apolipoprotein E, APO-E 95.0 0.099 3.4E-06 49.3 9.4 69 250-318 210-299 (307)
39 3r2p_A Apolipoprotein A-I; amp 95.0 0.024 8.3E-07 49.3 4.8 77 235-315 100-176 (185)
40 1ic2_A Tropomyosin alpha chain 94.9 0.34 1.2E-05 36.5 10.7 57 43-99 4-60 (81)
41 3hnw_A Uncharacterized protein 94.9 0.19 6.5E-06 42.0 10.0 61 40-100 70-130 (138)
42 1ic2_A Tropomyosin alpha chain 94.8 0.31 1.1E-05 36.8 10.2 51 49-99 3-53 (81)
43 3ghg_A Fibrinogen alpha chain; 94.8 0.75 2.6E-05 46.0 15.5 98 47-148 59-156 (562)
44 2lem_A Apolipoprotein A-I; lip 94.8 0.6 2.1E-05 41.4 13.7 88 232-321 95-189 (216)
45 1l8d_A DNA double-strand break 94.6 0.93 3.2E-05 35.6 12.9 75 69-143 13-98 (112)
46 2eqb_B RAB guanine nucleotide 94.3 1.5 5.2E-05 34.4 13.7 58 44-101 4-61 (97)
47 3qh9_A Liprin-beta-2; coiled-c 94.2 0.19 6.6E-06 38.1 7.4 59 39-97 20-78 (81)
48 2b9c_A Striated-muscle alpha t 94.2 2.2 7.6E-05 35.8 15.0 6 117-122 53-58 (147)
49 2ocy_A RAB guanine nucleotide 94.0 2.5 8.7E-05 35.8 20.3 39 156-194 99-137 (154)
50 3tnu_B Keratin, type II cytosk 94.0 2 6.7E-05 35.0 14.0 23 77-99 33-55 (129)
51 2v66_B Nuclear distribution pr 93.9 1.5 5.1E-05 35.3 12.8 82 79-164 2-83 (111)
52 3hnw_A Uncharacterized protein 93.7 0.89 3.1E-05 37.8 11.5 9 50-58 37-45 (138)
53 2v66_B Nuclear distribution pr 93.5 2.4 8.3E-05 34.0 16.5 87 47-151 5-91 (111)
54 3tnu_A Keratin, type I cytoske 93.5 1.9 6.4E-05 35.3 13.1 28 72-99 30-57 (131)
55 3ol1_A Vimentin; structural ge 93.4 2.6 8.8E-05 34.0 14.4 61 39-99 14-74 (119)
56 2l7b_A Apolipoprotein E, APO-E 93.3 0.13 4.4E-06 48.5 6.5 62 256-321 135-196 (307)
57 2v4h_A NF-kappa-B essential mo 92.9 1.6 5.5E-05 34.9 11.2 19 46-64 25-43 (110)
58 1m1j_A Fibrinogen alpha subuni 92.8 3.8 0.00013 40.4 15.9 102 43-148 56-157 (491)
59 3swk_A Vimentin; cytoskeleton, 92.4 2 7E-05 32.7 11.0 51 49-99 4-54 (86)
60 1m1j_B Fibrinogen beta chain; 92.3 4.2 0.00014 40.3 16.0 10 156-165 180-189 (464)
61 3bas_A Myosin heavy chain, str 92.2 2.5 8.5E-05 32.3 11.4 56 73-129 28-83 (89)
62 2oto_A M protein; helical coil 90.9 6.2 0.00021 32.9 20.6 51 49-99 26-76 (155)
63 3a7p_A Autophagy protein 16; c 90.7 4 0.00014 34.5 11.9 56 45-100 61-116 (152)
64 3ghg_A Fibrinogen alpha chain; 90.7 3.5 0.00012 41.3 13.4 40 141-180 114-153 (562)
65 3a7p_A Autophagy protein 16; c 90.7 3.9 0.00013 34.5 11.8 59 44-102 67-125 (152)
66 3jsv_C NF-kappa-B essential mo 90.6 2.8 9.4E-05 32.7 10.0 57 68-136 4-60 (94)
67 2jee_A YIIU; FTSZ, septum, coi 90.4 4.6 0.00016 30.6 11.3 57 75-132 8-64 (81)
68 1m1j_B Fibrinogen beta chain; 89.4 16 0.00054 36.2 16.9 9 172-180 182-190 (464)
69 2eqb_B RAB guanine nucleotide 89.3 6.6 0.00023 30.7 13.4 59 39-97 6-64 (97)
70 3mq9_A Bone marrow stromal ant 88.9 15 0.00051 35.4 16.4 25 166-190 444-468 (471)
71 1x8y_A Lamin A/C; structural p 88.9 4.5 0.00015 30.7 10.0 51 110-160 29-79 (86)
72 3oja_A Leucine-rich immune mol 88.6 9.7 0.00033 36.9 14.9 39 153-191 437-475 (487)
73 3i00_A HIP-I, huntingtin-inter 88.5 5.2 0.00018 32.4 10.7 27 75-101 35-61 (120)
74 3iox_A AGI/II, PA; alpha helix 88.5 19 0.00066 35.7 16.6 99 86-191 8-106 (497)
75 2zqm_A Prefoldin beta subunit 87.9 8.2 0.00028 30.1 12.8 35 108-142 69-103 (117)
76 3efg_A Protein SLYX homolog; x 87.9 1.8 6E-05 32.6 7.0 52 140-191 10-61 (78)
77 1jcd_A Major outer membrane li 86.6 4.2 0.00014 28.3 7.7 9 111-119 41-49 (52)
78 1gk4_A Vimentin; intermediate 86.2 9 0.00031 28.8 12.7 74 83-160 4-77 (84)
79 3htk_A Structural maintenance 85.9 4.1 0.00014 28.4 7.7 54 45-98 5-58 (60)
80 3bas_A Myosin heavy chain, str 85.9 9.8 0.00034 28.9 12.1 73 45-118 14-86 (89)
81 2zqm_A Prefoldin beta subunit 85.8 11 0.00037 29.4 11.1 13 52-64 13-25 (117)
82 1zxa_A CGMP-dependent protein 84.7 1.2 4.1E-05 32.7 4.4 41 61-101 13-53 (67)
83 3oja_A Leucine-rich immune mol 84.7 30 0.001 33.4 16.2 12 72-83 373-384 (487)
84 2ocy_A RAB guanine nucleotide 84.4 18 0.0006 30.6 19.3 35 157-191 107-141 (154)
85 1deq_A Fibrinogen (alpha chain 84.2 31 0.0011 33.2 17.8 38 114-151 111-148 (390)
86 3mov_A Lamin-B1; LMNB1, B-type 83.9 6.1 0.00021 30.6 8.5 22 114-135 42-63 (95)
87 1m1j_A Fibrinogen alpha subuni 83.2 37 0.0013 33.4 16.6 42 140-181 114-155 (491)
88 3efg_A Protein SLYX homolog; x 82.9 3.1 0.00011 31.2 6.2 47 42-88 11-57 (78)
89 2p22_C Protein SRN2; endosome, 82.9 23 0.00079 30.8 14.1 16 220-235 175-190 (192)
90 2e7s_A RAB guanine nucleotide 82.7 2.8 9.5E-05 34.8 6.3 26 74-99 33-58 (135)
91 2nrj_A HBL B protein; enteroto 82.4 28 0.00096 32.8 14.2 26 238-263 310-335 (346)
92 3mq9_A Bone marrow stromal ant 82.2 36 0.0012 32.6 18.2 40 157-196 428-467 (471)
93 3swk_A Vimentin; cytoskeleton, 82.2 14 0.00049 27.9 11.0 34 121-154 47-80 (86)
94 2pms_C Pneumococcal surface pr 82.0 11 0.00038 30.7 9.6 25 49-73 10-34 (125)
95 3ol1_A Vimentin; structural ge 81.4 19 0.00065 28.8 15.3 33 121-153 67-99 (119)
96 3nmd_A CGMP dependent protein 81.3 4 0.00014 30.3 6.1 23 70-92 44-66 (72)
97 1fxk_C Protein (prefoldin); ar 80.7 16 0.00053 29.3 10.3 45 105-149 84-128 (133)
98 2xdj_A Uncharacterized protein 79.9 17 0.00059 27.4 9.9 49 52-100 6-54 (83)
99 1fxk_A Prefoldin; archaeal pro 79.1 19 0.00065 27.4 10.6 23 114-136 70-92 (107)
100 2e7s_A RAB guanine nucleotide 79.1 18 0.00062 29.9 10.1 14 44-57 14-27 (135)
101 2avr_X Adhesion A; antiparalle 79.0 24 0.00082 28.5 13.2 58 39-99 3-63 (119)
102 3mq7_A Bone marrow stromal ant 78.8 24 0.00082 28.4 12.9 20 117-136 79-98 (121)
103 2v4h_A NF-kappa-B essential mo 78.0 24 0.00083 28.1 12.3 28 71-98 29-56 (110)
104 2qyw_A Vesicle transport throu 77.7 16 0.00055 28.4 9.1 55 71-132 47-101 (102)
105 1m1j_C Fibrinogen gamma chain; 77.7 36 0.0012 33.0 13.5 49 117-165 85-133 (409)
106 3iv1_A Tumor susceptibility ge 77.3 20 0.0007 26.8 9.1 53 46-98 19-71 (78)
107 1m1j_C Fibrinogen gamma chain; 77.1 20 0.0007 34.8 11.5 20 158-177 105-124 (409)
108 2dq0_A Seryl-tRNA synthetase; 77.1 12 0.0004 36.9 9.9 38 64-101 29-66 (455)
109 1fxk_A Prefoldin; archaeal pro 76.9 22 0.00077 27.0 11.7 30 107-136 70-99 (107)
110 3swy_A Cyclic nucleotide-gated 76.9 11 0.00037 25.5 6.7 42 72-124 4-45 (46)
111 1lwu_C Fibrinogen gamma chain; 76.9 5.6 0.00019 37.6 7.2 45 46-90 6-50 (323)
112 3etw_A Adhesin A; antiparallel 76.5 28 0.00097 28.1 13.2 25 85-109 7-31 (119)
113 3ghg_C Fibrinogen gamma chain; 76.5 34 0.0012 33.2 12.9 20 125-144 93-112 (411)
114 2i1j_A Moesin; FERM, coiled-co 76.5 3.9 0.00013 41.5 6.5 40 113-152 381-420 (575)
115 2xzr_A Immunoglobulin-binding 76.4 25 0.00087 27.4 17.2 11 115-125 61-71 (114)
116 3q8t_A Beclin-1; autophagy, AT 75.0 26 0.0009 27.0 14.0 69 122-190 10-78 (96)
117 2lw1_A ABC transporter ATP-bin 75.0 18 0.00063 27.2 8.5 31 40-70 17-47 (89)
118 2jee_A YIIU; FTSZ, septum, coi 74.3 26 0.00087 26.5 11.9 6 131-136 28-33 (81)
119 3a7o_A Autophagy protein 16; c 74.0 23 0.00079 26.0 8.2 41 60-100 19-59 (75)
120 4etp_A Kinesin-like protein KA 73.9 5.5 0.00019 38.6 6.5 22 43-64 8-29 (403)
121 2l5g_B Putative uncharacterize 73.6 5.8 0.0002 26.3 4.5 26 63-88 6-31 (42)
122 3swf_A CGMP-gated cation chann 73.0 26 0.00089 26.0 8.6 46 71-127 5-50 (74)
123 2yko_A LINE-1 ORF1P; RNA-bindi 72.9 6.9 0.00024 35.3 6.4 30 42-71 3-32 (233)
124 4emc_A Monopolin complex subun 72.2 8.8 0.0003 33.5 6.7 48 43-90 11-58 (190)
125 3qne_A Seryl-tRNA synthetase, 72.1 27 0.00092 34.7 11.1 37 65-101 32-68 (485)
126 2ke4_A CDC42-interacting prote 72.1 31 0.0011 26.8 9.3 28 109-136 15-42 (98)
127 1wle_A Seryl-tRNA synthetase; 71.8 25 0.00087 34.9 10.9 63 39-101 42-105 (501)
128 3s4r_A Vimentin; alpha-helix, 70.9 33 0.0011 26.3 12.7 22 125-146 58-79 (93)
129 2zdi_C Prefoldin subunit alpha 70.9 16 0.00055 30.1 7.9 46 105-150 94-139 (151)
130 3i00_A HIP-I, huntingtin-inter 70.4 40 0.0014 27.1 11.7 23 114-136 38-60 (120)
131 4gkw_A Spindle assembly abnorm 70.0 45 0.0015 27.5 18.9 61 41-101 14-74 (167)
132 2yy0_A C-MYC-binding protein; 69.6 3.4 0.00012 28.7 2.9 31 39-69 20-50 (53)
133 3iv1_A Tumor susceptibility ge 68.3 35 0.0012 25.5 10.0 58 121-178 16-73 (78)
134 2oto_A M protein; helical coil 68.0 50 0.0017 27.2 20.0 7 86-92 56-62 (155)
135 1lwu_C Fibrinogen gamma chain; 66.8 14 0.00046 34.9 7.3 19 78-96 17-35 (323)
136 3jsv_C NF-kappa-B essential mo 66.7 43 0.0015 25.9 10.6 33 47-79 4-36 (94)
137 3uux_B Mitochondrial division 66.6 70 0.0024 28.8 11.5 69 125-193 151-219 (242)
138 2i1j_A Moesin; FERM, coiled-co 66.3 15 0.00051 37.2 8.0 22 78-99 333-354 (575)
139 2xnx_M M protein, M1-BC1; cell 65.7 18 0.00061 30.2 7.0 47 118-164 61-107 (146)
140 3c9i_A Tail needle protein GP2 65.4 52 0.0018 29.1 10.2 66 54-120 79-144 (242)
141 2w83_C C-JUN-amino-terminal ki 65.2 40 0.0014 25.1 10.2 45 105-149 26-70 (77)
142 4etp_A Kinesin-like protein KA 65.1 17 0.00058 35.1 7.9 17 48-64 6-22 (403)
143 2pms_C Pneumococcal surface pr 64.7 47 0.0016 27.0 9.1 12 47-58 15-26 (125)
144 4h22_A Leucine-rich repeat fli 63.2 42 0.0014 26.4 8.3 53 48-100 19-71 (103)
145 2oqq_A Transcription factor HY 62.7 30 0.001 22.8 6.2 30 140-169 6-35 (42)
146 1ses_A Seryl-tRNA synthetase; 61.8 22 0.00077 34.4 8.1 34 65-98 27-60 (421)
147 3ghg_B Fibrinogen beta chain; 61.4 98 0.0034 30.5 12.5 7 72-78 101-107 (461)
148 2lw1_A ABC transporter ATP-bin 61.4 49 0.0017 24.8 9.8 21 76-96 25-45 (89)
149 3onj_A T-snare VTI1; helix, HA 61.3 52 0.0018 25.1 10.0 58 71-135 32-92 (97)
150 1vcs_A Vesicle transport throu 60.4 31 0.0011 26.7 7.3 61 69-136 34-94 (102)
151 1d7m_A Cortexillin I; coiled-c 60.3 56 0.0019 25.1 16.5 46 117-162 47-92 (101)
152 2qih_A Protein USPA1; trimeric 60.2 73 0.0025 26.4 17.8 29 156-184 115-143 (157)
153 3lay_A Zinc resistance-associa 60.0 74 0.0025 27.1 10.2 18 118-135 115-132 (175)
154 2yo3_A General control protein 59.7 46 0.0016 30.5 9.2 44 57-100 214-257 (268)
155 2k48_A Nucleoprotein; viral pr 59.7 62 0.0021 25.5 9.2 16 47-62 37-52 (107)
156 1d7m_A Cortexillin I; coiled-c 58.5 60 0.0021 24.9 15.5 55 45-99 4-58 (101)
157 3cvf_A Homer-3, homer protein 57.8 57 0.0019 24.4 9.2 18 117-134 21-38 (79)
158 3trt_A Vimentin; cytoskeleton, 57.8 50 0.0017 23.8 9.1 38 62-99 38-75 (77)
159 3htk_A Structural maintenance 56.9 44 0.0015 22.9 7.7 44 54-97 7-50 (60)
160 1fxk_C Protein (prefoldin); ar 56.2 74 0.0025 25.2 13.5 40 103-142 89-128 (133)
161 2xzr_A Immunoglobulin-binding 55.5 72 0.0024 24.9 16.7 36 47-82 8-43 (114)
162 4h22_A Leucine-rich repeat fli 55.4 74 0.0025 25.0 10.0 21 117-137 52-72 (103)
163 2yko_A LINE-1 ORF1P; RNA-bindi 55.3 22 0.00075 32.0 6.2 16 117-132 35-50 (233)
164 3etw_A Adhesin A; antiparallel 55.1 81 0.0028 25.4 13.7 59 39-100 3-61 (119)
165 3iyk_A VP5; icosahedral virus; 54.7 1.7E+02 0.0059 29.0 20.9 30 151-180 189-219 (526)
166 1wle_A Seryl-tRNA synthetase; 53.2 1.2E+02 0.0041 30.0 11.9 28 164-191 122-149 (501)
167 1go4_E MAD1 (mitotic arrest de 52.7 48 0.0017 25.9 7.0 32 67-98 13-44 (100)
168 2zdi_C Prefoldin subunit alpha 52.5 93 0.0032 25.3 10.7 39 44-82 8-49 (151)
169 3mq7_A Bone marrow stromal ant 52.4 90 0.0031 25.1 14.9 8 92-99 30-37 (121)
170 3m0d_C TNF receptor-associated 52.2 60 0.0021 23.0 8.7 32 47-78 8-39 (65)
171 2l5g_B Putative uncharacterize 52.1 29 0.00098 22.9 4.7 20 82-101 11-30 (42)
172 1wt6_A Myotonin-protein kinase 51.5 75 0.0025 23.9 10.3 27 109-135 45-71 (81)
173 3lss_A Seryl-tRNA synthetase; 50.7 1E+02 0.0035 30.5 10.8 37 65-101 36-72 (484)
174 2wq1_A General control protein 50.2 35 0.0012 21.3 4.6 24 76-99 3-26 (33)
175 2dq3_A Seryl-tRNA synthetase; 50.1 15 0.00051 35.6 4.6 35 65-99 29-63 (425)
176 2ke4_A CDC42-interacting prote 49.6 88 0.003 24.1 9.4 19 45-63 15-33 (98)
177 3cve_A Homer protein homolog 1 49.5 75 0.0026 23.3 10.8 27 110-136 8-34 (72)
178 1go4_E MAD1 (mitotic arrest de 49.2 92 0.0032 24.3 9.1 33 44-76 11-43 (100)
179 1ses_A Seryl-tRNA synthetase; 48.4 1.3E+02 0.0044 29.0 11.0 25 75-99 30-54 (421)
180 2oqq_A Transcription factor HY 48.2 43 0.0015 22.0 5.1 27 75-101 5-31 (42)
181 4emc_A Monopolin complex subun 47.8 1.2E+02 0.0042 26.2 9.5 17 72-88 19-35 (190)
182 3hhm_B NISH2 P85alpha; PI3KCA, 47.2 1.9E+02 0.0066 27.4 16.8 45 107-151 203-247 (373)
183 3htk_B Structural maintenance 46.5 79 0.0027 22.7 8.4 10 48-57 7-16 (73)
184 3vp9_A General transcriptional 45.9 47 0.0016 25.6 5.9 71 125-198 16-87 (92)
185 3u06_A Protein claret segregat 45.6 29 0.001 33.5 5.9 37 41-77 6-42 (412)
186 2c5k_T Syntaxin TLG1, T-snare 45.4 50 0.0017 25.3 6.1 29 73-101 36-64 (95)
187 2qih_A Protein USPA1; trimeric 45.1 1.3E+02 0.0045 24.9 20.3 27 167-193 112-138 (157)
188 2dq0_A Seryl-tRNA synthetase; 45.0 1.1E+02 0.0039 29.7 10.1 63 129-191 37-102 (455)
189 3trt_A Vimentin; cytoskeleton, 44.0 61 0.0021 23.3 6.2 15 114-128 61-75 (77)
190 1ci6_A Transcription factor AT 43.0 79 0.0027 22.2 6.4 22 76-97 33-54 (63)
191 4dzn_A Coiled-coil peptide CC- 43.0 54 0.0019 19.8 4.8 25 75-99 4-28 (33)
192 3qne_A Seryl-tRNA synthetase, 42.5 1.5E+02 0.0052 29.3 10.6 64 128-191 38-104 (485)
193 1gd2_E Transcription factor PA 42.4 51 0.0017 24.0 5.4 11 84-94 54-64 (70)
194 2w83_C C-JUN-amino-terminal ki 41.5 1.1E+02 0.0036 22.8 10.0 24 76-99 33-56 (77)
195 2k48_A Nucleoprotein; viral pr 41.1 1.3E+02 0.0044 23.7 9.1 11 115-125 88-98 (107)
196 3ra3_A P1C; coiled coil domain 40.6 45 0.0015 19.5 3.8 20 43-62 5-24 (28)
197 1gk4_A Vimentin; intermediate 40.5 1.1E+02 0.0037 22.6 11.9 37 152-188 34-70 (84)
198 1cii_A Colicin IA; bacteriocin 38.6 3.1E+02 0.01 27.2 16.9 20 68-87 358-377 (602)
199 1t3j_A Mitofusin 1; coiled coi 38.6 1.4E+02 0.0046 23.2 8.8 11 117-127 79-89 (96)
200 3gwk_C SAG1039, putative uncha 38.2 1.1E+02 0.0039 22.2 13.2 67 79-145 21-91 (98)
201 1kd8_A GABH AIV, GCN4 acid bas 38.0 48 0.0016 21.1 3.9 14 49-62 5-18 (36)
202 1a93_B MAX protein, coiled coi 38.0 47 0.0016 21.0 3.9 23 75-97 9-31 (34)
203 1ik9_A DNA repair protein XRCC 37.9 2.1E+02 0.007 25.0 10.5 8 115-122 188-195 (213)
204 2w6a_A ARF GTPase-activating p 37.7 1.1E+02 0.0037 21.7 6.5 30 72-101 26-55 (63)
205 1j1d_C Troponin I, TNI; THIN f 37.3 1.7E+02 0.0058 23.9 10.1 44 121-164 63-106 (133)
206 1t2k_D Cyclic-AMP-dependent tr 37.0 97 0.0033 21.4 6.1 28 72-99 28-55 (61)
207 1uix_A RHO-associated kinase; 37.0 1.2E+02 0.0042 22.1 9.3 27 52-78 4-30 (71)
208 3he5_B Synzip2; heterodimeric 36.7 92 0.0031 20.6 5.7 22 77-98 28-49 (52)
209 3mtu_A Tropomyosin alpha-1 cha 36.5 70 0.0024 23.4 5.4 27 47-73 4-30 (75)
210 4fi5_A Nucleoprotein; structur 36.4 1.6E+02 0.0055 23.4 8.7 16 48-63 25-40 (113)
211 2lma_A THP5 peptide; CD4+, imm 36.3 12 0.00042 21.6 0.9 17 282-305 2-18 (26)
212 2pnv_A Small conductance calci 35.1 76 0.0026 20.9 4.8 11 117-127 24-34 (43)
213 3cvf_A Homer-3, homer protein 34.9 1.4E+02 0.0048 22.2 11.0 23 108-130 19-41 (79)
214 4hpq_C ATG17, KLTH0D15642P; au 33.9 3.3E+02 0.011 26.3 23.6 54 46-99 236-289 (413)
215 1lrz_A FEMA, factor essential 33.4 76 0.0026 30.2 6.7 58 70-136 244-301 (426)
216 1sjj_A Actinin; 3-helix bundle 33.4 4.1E+02 0.014 27.2 16.7 151 40-192 337-491 (863)
217 2wt7_A Proto-oncogene protein 33.2 1.2E+02 0.0042 21.1 6.4 20 77-96 34-53 (63)
218 2yy0_A C-MYC-binding protein; 32.8 55 0.0019 22.5 4.0 32 44-75 18-49 (53)
219 1avy_A Fibritin, gpwac M; bact 32.1 93 0.0032 22.8 5.2 28 72-99 14-41 (74)
220 2ou1_A Apolipoprotein A-II; hi 31.6 25 0.00085 25.9 2.1 37 282-318 12-53 (77)
221 3q0x_A Centriole protein; cent 31.5 2.6E+02 0.0088 24.8 9.3 57 140-196 167-223 (228)
222 1ik9_A DNA repair protein XRCC 31.4 2.6E+02 0.009 24.3 13.1 14 127-140 157-170 (213)
223 1oef_A Apolipoprotein E; glyco 31.2 40 0.0014 19.5 2.7 15 254-268 2-16 (26)
224 4dk0_A Putative MACA; alpha-ha 31.1 2.4E+02 0.0083 25.5 9.6 19 39-57 64-82 (369)
225 1vcs_A Vesicle transport throu 30.9 1.2E+02 0.0041 23.2 6.3 30 63-92 35-64 (102)
226 2yny_A General control protein 30.7 89 0.003 24.6 5.4 29 71-99 74-102 (106)
227 1ytz_T Troponin T; muscle, THI 30.7 1.7E+02 0.0057 23.0 7.1 43 121-163 47-89 (107)
228 1lrz_A FEMA, factor essential 30.5 1.3E+02 0.0045 28.5 7.8 28 106-133 244-271 (426)
229 1gmj_A ATPase inhibitor; coile 30.2 1.8E+02 0.006 22.0 7.1 27 73-99 51-77 (84)
230 3cl3_D NF-kappa-B essential mo 30.2 1.8E+02 0.0063 23.6 7.3 19 46-64 10-28 (130)
231 1zxa_A CGMP-dependent protein 29.6 71 0.0024 23.1 4.3 22 58-79 24-45 (67)
232 4dk0_A Putative MACA; alpha-ha 29.6 2.1E+02 0.0072 25.9 8.8 12 50-61 68-79 (369)
233 3lss_A Seryl-tRNA synthetase; 29.5 3.2E+02 0.011 26.9 10.5 25 167-191 113-137 (484)
234 1kd8_B GABH BLL, GCN4 acid bas 29.3 1.1E+02 0.0038 19.4 4.7 12 48-59 4-15 (36)
235 3fav_B ESAT-6, 6 kDa early sec 28.8 1.6E+02 0.0056 21.1 9.5 68 71-138 10-81 (94)
236 1a93_B MAX protein, coiled coi 27.6 77 0.0026 20.0 3.6 13 53-65 8-20 (34)
237 1x79_B RAB GTPase binding effe 27.6 2.3E+02 0.0078 22.4 12.9 22 140-161 48-69 (112)
238 3okq_A BUD site selection prot 27.4 2.6E+02 0.0089 23.0 12.4 20 170-189 105-124 (141)
239 4fla_A Regulation of nuclear P 26.8 2.7E+02 0.0092 23.0 11.4 11 126-136 89-99 (152)
240 1g6u_A Domain swapped dimer; d 26.6 1.4E+02 0.0047 19.5 5.7 20 141-160 24-43 (48)
241 1s1c_X RHO-associated, coiled- 26.2 1.9E+02 0.0065 21.1 8.9 28 50-77 4-31 (71)
242 3onj_A T-snare VTI1; helix, HA 26.1 2.1E+02 0.0073 21.6 10.0 30 63-92 31-60 (97)
243 3v86_A De novo design helix; c 26.0 88 0.003 18.1 3.4 17 111-127 9-25 (27)
244 4e61_A Protein BIM1; EB1-like 26.0 2.4E+02 0.0082 22.1 9.6 20 108-127 38-57 (106)
245 3zbh_A ESXA; unknown function, 26.0 1.8E+02 0.0063 20.8 13.4 64 80-143 23-90 (99)
246 3sja_C Golgi to ER traffic pro 25.8 1.4E+02 0.0046 21.5 5.2 25 108-132 31-55 (65)
247 3m0a_A TNF receptor-associated 25.6 1.7E+02 0.0058 20.3 9.3 53 43-95 3-55 (66)
248 1j1e_C Troponin I, TNI; THIN f 25.2 3.2E+02 0.011 23.4 9.9 44 121-164 63-106 (180)
249 1deb_A APC protein, adenomatou 25.1 1.7E+02 0.0057 20.0 7.1 45 113-157 7-51 (54)
250 3fav_A ESAT-6-like protein ESX 25.1 2E+02 0.007 21.0 8.4 62 79-140 20-85 (101)
251 2d4y_A HAP1, flagellar HOOK-as 24.7 4.1E+02 0.014 25.4 10.3 52 69-120 92-147 (463)
252 3uux_B Mitochondrial division 24.7 3.8E+02 0.013 24.0 11.7 71 121-191 154-224 (242)
253 2wt7_A Proto-oncogene protein 24.5 1.8E+02 0.0062 20.2 6.4 27 73-99 23-49 (63)
254 1fzc_C Fibrin; blood coagulati 24.4 46 0.0016 31.2 3.2 13 84-96 29-41 (319)
255 4etp_B Spindle POLE BODY-assoc 24.0 1.7E+02 0.0058 27.5 6.9 16 42-57 7-22 (333)
256 3a7o_A Autophagy protein 16; c 24.0 2.1E+02 0.0073 20.9 8.8 53 49-101 15-67 (75)
257 1t2k_D Cyclic-AMP-dependent tr 23.9 1.8E+02 0.0061 20.0 8.1 26 74-99 23-48 (61)
258 1z56_A Ligase interacting fact 23.7 44 0.0015 30.2 2.7 60 39-98 165-232 (246)
259 3fpp_A Macrolide-specific effl 23.3 1.4E+02 0.0049 26.8 6.4 19 39-57 63-81 (341)
260 1avy_A Fibritin, gpwac M; bact 23.0 1.7E+02 0.0058 21.4 5.2 33 53-85 9-41 (74)
261 1ytz_T Troponin T; muscle, THI 22.8 2.4E+02 0.0081 22.1 6.6 34 42-75 46-79 (107)
262 2qyw_A Vesicle transport throu 22.7 2.6E+02 0.0088 21.3 8.0 48 151-198 26-75 (102)
263 1n7s_D SNAP-25A; neuronal snar 22.7 2E+02 0.0067 19.9 8.5 41 44-84 9-49 (66)
264 1j1d_B Troponin T, TNT; THIN f 22.6 2.8E+02 0.0095 21.7 8.4 38 125-162 51-88 (106)
265 3l4q_C Phosphatidylinositol 3- 22.5 3.5E+02 0.012 22.9 17.2 119 44-162 9-149 (170)
266 2d2s_A Exocyst complex compone 22.4 3.9E+02 0.013 23.3 13.0 93 207-310 136-234 (235)
267 2ynz_A General control protein 22.3 3.4E+02 0.012 22.6 8.4 50 43-92 4-53 (154)
268 3m48_A General control protein 22.3 1.5E+02 0.0051 18.5 4.3 16 114-129 12-27 (33)
269 2wuj_A Septum site-determining 22.1 1.1E+02 0.0037 21.1 4.0 29 71-99 25-53 (57)
270 3q0x_A Centriole protein; cent 22.1 3.6E+02 0.012 23.9 8.4 50 43-92 169-218 (228)
271 2l5g_A GPS2 protein, G protein 22.0 1.1E+02 0.0038 19.6 3.6 20 82-101 10-29 (38)
272 3sjb_C Golgi to ER traffic pro 21.6 1.8E+02 0.006 22.4 5.4 24 111-134 51-74 (93)
273 3vp9_A General transcriptional 21.5 2.7E+02 0.0094 21.2 6.6 23 72-94 42-64 (92)
274 1fzc_C Fibrin; blood coagulati 21.0 99 0.0034 28.9 4.7 13 80-92 32-44 (319)
275 2ic9_A Nucleocapsid protein; h 20.8 2.9E+02 0.01 21.3 8.6 12 121-132 57-68 (96)
276 2b9b_A Fusion glycoprotein F0; 20.8 2.6E+02 0.0089 27.7 7.8 56 39-101 424-479 (497)
277 2f1m_A Acriflavine resistance 20.8 4.1E+02 0.014 22.9 9.7 23 39-61 54-76 (277)
278 2ic6_A Nucleocapsid protein; h 20.7 2.6E+02 0.009 20.7 9.0 12 121-132 57-68 (78)
279 2vs0_A Virulence factor ESXA; 20.6 2.4E+02 0.0081 20.1 11.0 67 76-142 16-86 (97)
280 2xz3_A Maltose ABC transporter 20.4 2.7E+02 0.0091 26.3 7.9 26 74-99 380-405 (463)
281 2r2v_A GCN4 leucine zipper; co 20.2 1.7E+02 0.0058 18.3 4.6 18 82-99 10-27 (34)
282 2dq3_A Seryl-tRNA synthetase; 20.2 1.1E+02 0.0038 29.4 5.1 64 128-191 35-101 (425)
283 3ibp_A Chromosome partition pr 20.1 5.2E+02 0.018 23.9 9.9 21 171-191 82-102 (302)
No 1
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=98.52 E-value=7.4e-05 Score=68.66 Aligned_cols=164 Identities=14% Similarity=0.142 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH--HH
Q 020809 45 IELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADE--LE 122 (321)
Q Consensus 45 ~el~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~qk~~~~~~eeq~~~~~~Rire--L~ 122 (321)
.+++.++..+..+-..+..+..++..+...+..++..+.++..+|..++++|.... .++..++.++.. =+
T Consensus 18 ~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~--------~ri~~~~~~l~~v~~~ 89 (256)
T 3na7_A 18 KEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTN--------AKIASIQKKMSEIKSE 89 (256)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHCSSS
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHccCCH
Confidence 34444444444444444444444444444444444444444444444444444442 223333333322 12
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhhh
Q 020809 123 KQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKV----AEEEMMRAKFEATSR 198 (321)
Q Consensus 123 k~Ie~Lk~ele~~~~kk~~LEa~a~e~ekk~~el~~~le~Lek~~~Eqk~~l~elE~~lq~----~Eeei~kl~~ea~~~ 198 (321)
+++..|..+++....++..++....++..++..++..++.+.....+.+..+......+.. ++.++..+..+....
T Consensus 90 kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~e~~~e~~~l~~~r~~l 169 (256)
T 3na7_A 90 RELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVENEVKNIKETQQIIFKKKEDL 169 (256)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555555555555555555555555555555554444444444444443333322 222222222221111
Q ss_pred hhhhhhhhccCchhHHHHHHHHHHHH
Q 020809 199 SKELTEVHSAWLPPWLAVHLLQCQSL 224 (321)
Q Consensus 199 a~ql~e~~g~~l~Pwla~~~~~~~~~ 224 (321)
..-+||-|-..|.++..-
T Consensus 170 --------~~~i~~~lL~~Yerir~~ 187 (256)
T 3na7_A 170 --------VEKTEPKIYSFYERIRRW 187 (256)
T ss_dssp --------HHTSCHHHHHHHHHHHHH
T ss_pred --------HhcCCHHHHHHHHHHHHh
Confidence 124788888888887653
No 2
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=98.40 E-value=0.0003 Score=61.98 Aligned_cols=55 Identities=18% Similarity=0.257 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 43 LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELS 97 (321)
Q Consensus 43 l~~el~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~ 97 (321)
+..++..++..+..+...++.+..++..+...+..++..+..+...+..+...+.
T Consensus 4 ~~~~~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 (284)
T 1c1g_A 4 IKKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELD 58 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444444444444333333333
No 3
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=98.05 E-value=0.0011 Score=60.80 Aligned_cols=136 Identities=15% Similarity=0.203 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hhHHHHHHHHHH
Q 020809 43 LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKK--------ETLNAAEQVDKA 114 (321)
Q Consensus 43 l~~el~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~qk~--------~~~~~eeq~~~~ 114 (321)
+...+..+...+..++..+..+...+..+...+..++..+..++..|..+...|...+.. .-.++...++.+
T Consensus 23 l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~~kE~~aL~kEie~~ 102 (256)
T 3na7_A 23 LEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSERELRSLNIEEDIA 102 (256)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 344444445555555555555555555555555555555555555555555555544433 235566777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 115 HARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERAL 181 (321)
Q Consensus 115 ~~RireL~k~Ie~Lk~ele~~~~kk~~LEa~a~e~ekk~~el~~~le~Lek~~~Eqk~~l~elE~~l 181 (321)
+.|+..|++.|..+-..++..+.....++.....++..+ ......+.....+....+..+....
T Consensus 103 ~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l---~~~~~~~~~~~~e~~~e~~~l~~~r 166 (256)
T 3na7_A 103 KERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLA---LELESLVENEVKNIKETQQIIFKKK 166 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777776655555554444444332 3333333333344444444443333
No 4
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=97.66 E-value=0.0098 Score=52.39 Aligned_cols=130 Identities=15% Similarity=0.187 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHHHHH
Q 020809 43 LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKK---ETLNAAEQVDKAHARAD 119 (321)
Q Consensus 43 l~~el~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~qk~---~~~~~eeq~~~~~~Rir 119 (321)
+.+++.+++....+......++..+ ++..|.++++.+.++...+..|..++++.+.+ ........++.+++.+.
T Consensus 22 ~~q~~~~le~El~EFqesSrELE~E---LE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~ 98 (189)
T 2v71_A 22 YKQSFQEARDELVEFQEGSRELEAE---LEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLS 98 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555443 46778888888888888888888888888553 12223344556666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 120 ELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIR 175 (321)
Q Consensus 120 eL~k~Ie~Lk~ele~~~~kk~~LEa~a~e~ekk~~el~~~le~Lek~~~Eqk~~l~ 175 (321)
.|....+.++..+.++......||...+.....+..+..+++..-....-....++
T Consensus 99 ~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~alLE~El~ 154 (189)
T 2v71_A 99 QTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELD 154 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666666666666666666666666666666555555555554
No 5
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=97.62 E-value=0.019 Score=53.22 Aligned_cols=83 Identities=13% Similarity=0.177 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHhhccccchhHHhhhhhhhhh--------------hhhhHHHHHhccchhhHHHHhHhHHHHHhhhhh
Q 020809 237 MDVAIQKALEKKAQAGKWVQPHVETIKAKWIPA--------------VKEQWVVFTTNVEPHVQTLKTKTIEACEATKTA 302 (321)
Q Consensus 237 ~~~~~~~~~~k~~~~~~~~~ph~~~~~~k~~p~--------------~~~~~~~~~~~~~p~~q~~~~~~~~~~~~~~~~ 302 (321)
.+.+-.+.......++.|..|+.+.++.+.... +..++..++..+.||+..+...-..-.+..+..
T Consensus 167 a~~L~~~l~~~~eeLr~~L~p~ae~lr~~l~~~~e~l~~~l~~~~~~~~qq~e~f~~~~~p~~e~~~~~l~~~~e~l~~~ 246 (273)
T 3s84_A 167 AEELKARISASAEELRQRLAPLAEDVRGNLRGNTEGLQKSLAELGGHLDQQVEEFRRRVEPYGENFNKALVQQMEQLRQK 246 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHH
Confidence 445556666667778888888888888776642 444555555566666666655555555555555
Q ss_pred cCchhHHHHhhhccccc
Q 020809 303 VTPHIIRVQEVVDPYFQ 319 (321)
Q Consensus 303 ~~ph~~k~~~~~~py~~ 319 (321)
+.||+..++..++|+-+
T Consensus 247 l~~~~~~~~~~~~~~~~ 263 (273)
T 3s84_A 247 LGPHAGDVEGHLSFLEK 263 (273)
T ss_dssp HSCC-------------
T ss_pred hCcchhhHHhhhhHHHH
Confidence 56666555555555543
No 6
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=97.60 E-value=0.00021 Score=78.46 Aligned_cols=61 Identities=16% Similarity=0.134 Sum_probs=33.3
Q ss_pred CCchHHHHHHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 39 DSSPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSL 99 (321)
Q Consensus 39 ~~~~l~~el~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~ 99 (321)
+...++.++.+++.++..++..+.++..++..+..++..++..+......+..++.++..+
T Consensus 858 El~~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L~~e~~~l~~~e~~l~~l 918 (1184)
T 1i84_S 858 EMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRL 918 (1184)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555666666666666666666665555555555555555555444444444444444333
No 7
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=97.57 E-value=0.00029 Score=77.44 Aligned_cols=53 Identities=11% Similarity=0.095 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 44 KIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKEL 96 (321)
Q Consensus 44 ~~el~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI 96 (321)
..++.+++.++..++..+..+...+.+++..+..++.++..+..++......+
T Consensus 856 ~~El~~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L~~e~~~l 908 (1184)
T 1i84_S 856 EEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELY 908 (1184)
T ss_dssp HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555444444444444444444444444333333
No 8
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.43 E-value=0.11 Score=62.39 Aligned_cols=97 Identities=20% Similarity=0.102 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccCchhHHHHHHH
Q 020809 140 EALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSRSKELTEVHSAWLPPWLAVHLL 219 (321)
Q Consensus 140 ~~LEa~a~e~ekk~~el~~~le~Lek~~~Eqk~~l~elE~~lq~~Eeei~kl~~ea~~~a~ql~e~~g~~l~Pwla~~~~ 219 (321)
+.+++....++.++.+.+..+..+++..+..+.+++....+.+.++.++...+...... . -|.--|+.+..
T Consensus 2017 ~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA-~--------~Li~gL~~Ek~ 2087 (3245)
T 3vkg_A 2017 EQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRS-I--------ALLDNLNSERG 2087 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H--------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H--------HHHHhhhhccc
Confidence 33444444444444444444444444444444444444444444444433332221111 1 13334777888
Q ss_pred HHHHHHHhHHHhhCcchHHHHHHHHH
Q 020809 220 QCQSLIETHWNAHGKPAMDVAIQKAL 245 (321)
Q Consensus 220 ~~~~~~~~~~~~hg~p~~~~~~~~~~ 245 (321)
||...+..+-......+-+.++--|.
T Consensus 2088 RW~~~~~~l~~~~~~L~GD~LLaaaf 2113 (3245)
T 3vkg_A 2088 RWEQQSENFNTQMSTVVGDVVLASAF 2113 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 88888888877777777777765544
No 9
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=97.41 E-value=0.0049 Score=67.23 Aligned_cols=131 Identities=24% Similarity=0.277 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 020809 45 IELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQ 124 (321)
Q Consensus 45 ~el~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~qk~~~~~~eeq~~~~~~RireL~k~ 124 (321)
....+++.++.+|+..+++..++...+.+.+...+ ..+..++..|+.+++.++. .+.....++.++..|+++
T Consensus 921 ~~~~~LE~kl~eLq~rL~~~e~~n~~L~~~~~~~~---~~~~~e~~~L~~~l~~le~-----~~~e~~~~~~~v~~L~~e 992 (1080)
T 2dfs_A 921 KLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLE---ITYSTETEKLRSDVERLRM-----SEEEAKNATNRVLSLQEE 992 (1080)
T ss_dssp ------------------------------CHHHH---HHHHHHHHHHHHTHHHHHH-----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHH
Confidence 33445555555555555555444444444444333 2344555566655555543 233333555677777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 125 IDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEE 186 (321)
Q Consensus 125 Ie~Lk~ele~~~~kk~~LEa~a~e~ekk~~el~~~le~Lek~~~Eqk~~l~elE~~lq~~Ee 186 (321)
++.+.+++.....++..++.+...+. .+++.++..|++.+...+.++++++......++
T Consensus 993 ~~~l~~~~~~~~ke~~~lee~~~~~~---~~L~~kv~~L~~e~~~L~qq~~~l~~~~~~~~~ 1051 (1080)
T 2dfs_A 993 IAKLRKELHQTQTEKKTIEEWADKYK---HETEQLVSELKEQNTLLKTEKEELNRRIHDQAK 1051 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777766666666555444 355566667777666666666666644444433
No 10
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=97.24 E-value=0.079 Score=46.61 Aligned_cols=78 Identities=24% Similarity=0.306 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 106 NAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAE 185 (321)
Q Consensus 106 ~~eeq~~~~~~RireL~k~Ie~Lk~ele~~~~kk~~LEa~a~e~ekk~~el~~~le~Lek~~~Eqk~~l~elE~~lq~~E 185 (321)
.++..++.+.+|.++|...+..|..+++..+.+ +..-..+....++.++..+..+..........|.+++..-+.++
T Consensus 46 ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K---~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlE 122 (189)
T 2v71_A 46 ELEAQLVQAEQRNRDLQADNQRLKYEVEALKEK---LEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLE 122 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 344444555555555555555555555555522 22222333333444444444444444444444444444444443
Q ss_pred H
Q 020809 186 E 186 (321)
Q Consensus 186 e 186 (321)
.
T Consensus 123 r 123 (189)
T 2v71_A 123 R 123 (189)
T ss_dssp H
T ss_pred H
Confidence 3
No 11
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=97.23 E-value=0.037 Score=51.28 Aligned_cols=73 Identities=8% Similarity=0.153 Sum_probs=34.6
Q ss_pred HHhhccccchhHHhhhhhhhhhhhh---h----HHHHHhccchh-------hHHHHhHhHHHHHhhhhhcCchhHHHHhh
Q 020809 248 KAQAGKWVQPHVETIKAKWIPAVKE---Q----WVVFTTNVEPH-------VQTLKTKTIEACEATKTAVTPHIIRVQEV 313 (321)
Q Consensus 248 ~~~~~~~~~ph~~~~~~k~~p~~~~---~----~~~~~~~~~p~-------~q~~~~~~~~~~~~~~~~~~ph~~k~~~~ 313 (321)
+..++.-+.|+++-++.++-|+... + |-.+...+.|| ++..+....||.+....++.=.++.++..
T Consensus 167 a~~L~~~l~~~~eeLr~~L~p~ae~lr~~l~~~~e~l~~~l~~~~~~~~qq~e~f~~~~~p~~e~~~~~l~~~~e~l~~~ 246 (273)
T 3s84_A 167 AEELKARISASAEELRQRLAPLAEDVRGNLRGNTEGLQKSLAELGGHLDQQVEEFRRRVEPYGENFNKALVQQMEQLRQK 246 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHH
Confidence 3445556667777777777776222 1 22222222222 22223333333333333333344488888
Q ss_pred hcccccc
Q 020809 314 VDPYFQV 320 (321)
Q Consensus 314 ~~py~~~ 320 (321)
++||+-+
T Consensus 247 l~~~~~~ 253 (273)
T 3s84_A 247 LGPHAGD 253 (273)
T ss_dssp HSCC---
T ss_pred hCcchhh
Confidence 8898753
No 12
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=97.17 E-value=0.012 Score=64.06 Aligned_cols=29 Identities=17% Similarity=0.209 Sum_probs=1.0
Q ss_pred chHHHHHHHHHHHHHHHHHhHHHHHHhhh
Q 020809 41 SPLKIELDQLKSKIRSLESHIDEKTQELK 69 (321)
Q Consensus 41 ~~l~~el~qlk~ki~~Les~i~e~~~eLk 69 (321)
..+++++.+|+.++.+.+....++..++.
T Consensus 924 ~~LE~kl~eLq~rL~~~e~~n~~L~~~~~ 952 (1080)
T 2dfs_A 924 IGLENKIMQLQRKIDEQNKEYKSLLEKMN 952 (1080)
T ss_dssp ---------------------------CH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666777766666666655555554
No 13
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Probab=97.16 E-value=0.0027 Score=57.82 Aligned_cols=101 Identities=12% Similarity=0.127 Sum_probs=78.4
Q ss_pred chhHHHHHHHHHHHHHHhHHHhhCcchHHHHHHHHHHHHHhhccccchhHHhhhhhhhhhhhhhHHHHHhccchhhHHHH
Q 020809 210 LPPWLAVHLLQCQSLIETHWNAHGKPAMDVAIQKALEKKAQAGKWVQPHVETIKAKWIPAVKEQWVVFTTNVEPHVQTLK 289 (321)
Q Consensus 210 l~Pwla~~~~~~~~~~~~~~~~hg~p~~~~~~~~~~~k~~~~~~~~~ph~~~~~~k~~p~~~~~~~~~~~~~~p~~q~~~ 289 (321)
|-|....-..++..... ....+..|..+.+-.++.++...++.|+.||++.++.++.|.+.. ++..+.||.+.++
T Consensus 141 L~p~~eelr~kl~~~ve-elk~~l~P~~ee~r~kl~~~~~el~~~l~p~~~e~~~kl~~~~e~----lr~~l~p~~e~lk 215 (243)
T 2a01_A 141 LSPLGEEMRDRARAHVD-ALRTHLAPYSDELRQRLAARLEALKENGGARLAEYHAKATEHLST----LSEKAKPALEDLR 215 (243)
T ss_dssp CCSSTHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSCCHHHHHHH----HHHHHHHHHHHSS
T ss_pred HHhHHHHHHHHHHHHHH-HHHHHHHhhHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH----HHHHhHHHHHHHH
Confidence 44444433334333322 234567789999999999999999999999999999999888555 8888999999999
Q ss_pred hHhHHHHHhhhhhcCchhHHHHhhhc
Q 020809 290 TKTIEACEATKTAVTPHIIRVQEVVD 315 (321)
Q Consensus 290 ~~~~~~~~~~~~~~~ph~~k~~~~~~ 315 (321)
.+-.||++..+..+..-+++++..+.
T Consensus 216 ~~l~p~~e~~~~~l~~~~e~~~~~~~ 241 (243)
T 2a01_A 216 QGLLPVLESFKVSFLSALEEYTKKLN 241 (243)
T ss_dssp SCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99889999888888888888887764
No 14
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=96.96 E-value=0.12 Score=42.49 Aligned_cols=59 Identities=22% Similarity=0.362 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 105 LNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKL 163 (321)
Q Consensus 105 ~~~eeq~~~~~~RireL~k~Ie~Lk~ele~~~~kk~~LEa~a~e~ekk~~el~~~le~L 163 (321)
.+.+++...+.++=.+|+..|..+...++........|.+..+.++..+.++...++.+
T Consensus 65 ~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~ 123 (129)
T 2fxo_A 65 ADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDL 123 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556555555555566666666555555555555555555555554444444444443
No 15
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=96.92 E-value=0.032 Score=55.88 Aligned_cols=38 Identities=16% Similarity=0.225 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 154 SDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRA 191 (321)
Q Consensus 154 ~el~~~le~Lek~~~Eqk~~l~elE~~lq~~Eeei~kl 191 (321)
..++..+..++...++++.++.++.++...+..++..+
T Consensus 540 ~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l 577 (597)
T 3oja_B 540 EDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQL 577 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 33334444455555555555555554444444444444
No 16
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=96.73 E-value=0.11 Score=40.97 Aligned_cols=32 Identities=13% Similarity=0.205 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHH
Q 020809 47 LDQLKSKIRSLESHIDEKTQELKGKDEVVAQK 78 (321)
Q Consensus 47 l~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ 78 (321)
++.++.++..|....+............+..+
T Consensus 4 MdaIKkKm~~lk~e~e~a~drae~~e~~~k~~ 35 (101)
T 3u1c_A 4 MDAIKKKMQMLKLDKENALDRAEQAEADKKAA 35 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555554433333333333333
No 17
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=96.73 E-value=0.00097 Score=58.33 Aligned_cols=62 Identities=18% Similarity=0.249 Sum_probs=34.3
Q ss_pred chhHHhhhhhhhhhhhhhHHHHHhccchhhHHHHhHhHHHHHhhhhhcCchhHHHHhhhccccccC
Q 020809 256 QPHVETIKAKWIPAVKEQWVVFTTNVEPHVQTLKTKTIEACEATKTAVTPHIIRVQEVVDPYFQVY 321 (321)
Q Consensus 256 ~ph~~~~~~k~~p~~~~~~~~~~~~~~p~~q~~~~~~~~~~~~~~~~~~ph~~k~~~~~~py~~~~ 321 (321)
.+|++.++.++-|++.+ +++.+...++.++.+-.||.+..++-+..|++.++..+.||+.+|
T Consensus 110 ~~~~e~lr~~l~Py~~e----l~~~~~~~~e~Lr~~L~p~~e~lr~~l~~~~e~lk~~l~Py~ee~ 171 (185)
T 3r2p_A 110 QEEMELYRQKVEPLRAE----LQEGARQKLHELQEKLSPLGEEMRDRARAHVDALRTHLAPYSDEL 171 (185)
T ss_dssp HHHHHHHHHHHHHHHHH----HHHHHHHHHTTTTTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHH----HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 33444444444444332 333344444444455555666666666677777777777877654
No 18
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=96.64 E-value=0.27 Score=41.91 Aligned_cols=113 Identities=19% Similarity=0.278 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 71 KDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAE 150 (321)
Q Consensus 71 kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~qk~~~~~~eeq~~~~~~RireL~k~Ie~Lk~ele~~~~kk~~LEa~a~e~e 150 (321)
....+...+......+.+|..|+.++...-+ ..+.++.+.+++..|-..++.+|..|. .+..+.+.|+..++
T Consensus 26 ~E~dLEraEERae~aE~k~~eLEeeL~~v~~-nlKsLE~seekasqrEd~yEeqIk~L~-------~kLKEAE~RAE~AE 97 (155)
T 2efr_A 26 LKKLLERAEERAELSEGKSAELEEELKTVTN-NLKSLEAQAEKYSQKEDKYEEEIKVLS-------DKLKEAETRAEFAE 97 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhccchhhhhHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Confidence 5555555555555555555556655555533 444555555555555444444444433 33445566666777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 151 KKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRA 191 (321)
Q Consensus 151 kk~~el~~~le~Lek~~~Eqk~~l~elE~~lq~~Eeei~kl 191 (321)
..+..++..++.++......+.....+...+..+-..+.-+
T Consensus 98 Rsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~ 138 (155)
T 2efr_A 98 RSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEEL 138 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 77777777777777776666666666666666655555544
No 19
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Probab=96.58 E-value=0.0024 Score=58.22 Aligned_cols=87 Identities=9% Similarity=0.140 Sum_probs=66.2
Q ss_pred HHhhCcchHHHHHHHHHHHHHhhccccchhHHhhhhhhhhhhhhhHHHHHhccchhhHHHHhHhHHHHHhhhhhcCchhH
Q 020809 229 WNAHGKPAMDVAIQKALEKKAQAGKWVQPHVETIKAKWIPAVKEQWVVFTTNVEPHVQTLKTKTIEACEATKTAVTPHII 308 (321)
Q Consensus 229 ~~~hg~p~~~~~~~~~~~k~~~~~~~~~ph~~~~~~k~~p~~~~~~~~~~~~~~p~~q~~~~~~~~~~~~~~~~~~ph~~ 308 (321)
+..+=.|+++.+-.++.+....++.-..|+++.++.+. ..++..++..+.||++.+..+-.++++..+..+.|+++
T Consensus 137 l~~~L~p~~eelr~kl~~~veelk~~l~P~~ee~r~kl----~~~~~el~~~l~p~~~e~~~kl~~~~e~lr~~l~p~~e 212 (243)
T 2a01_A 137 LQEKLSPLGEEMRDRARAHVDALRTHLAPYSDELRQRL----AARLEALKENGGARLAEYHAKATEHLSTLSEKAKPALE 212 (243)
T ss_dssp HCCSCCSSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHTTTSSSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH----HHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 34466788888888888888888888888888888876 44555688888888777777777777777777777777
Q ss_pred HHHhhhccccc
Q 020809 309 RVQEVVDPYFQ 319 (321)
Q Consensus 309 k~~~~~~py~~ 319 (321)
.++.-+.||++
T Consensus 213 ~lk~~l~p~~e 223 (243)
T 2a01_A 213 DLRQGLLPVLE 223 (243)
T ss_dssp HSSSCSHHHHH
T ss_pred HHHHHhHHHHH
Confidence 77777777765
No 20
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=96.55 E-value=0.22 Score=59.69 Aligned_cols=71 Identities=13% Similarity=0.228 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 121 LEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRA 191 (321)
Q Consensus 121 L~k~Ie~Lk~ele~~~~kk~~LEa~a~e~ekk~~el~~~le~Lek~~~Eqk~~l~elE~~lq~~Eeei~kl 191 (321)
++..++.++++++..+.++...++..++++.+++.++...+.+...++..+..++..+..+..++.-+..|
T Consensus 2012 kr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL 2082 (3245)
T 3vkg_A 2012 LREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNL 2082 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33445566666666666666666666666666666666666665555555566665555555555554444
No 21
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Probab=96.53 E-value=0.0021 Score=55.51 Aligned_cols=81 Identities=9% Similarity=0.131 Sum_probs=39.7
Q ss_pred cchHHHHHHHHHHHHHhhccccchhHHhhhhhhhhhhhhhHHHHHhccchhhHHHHhHhHHHHHhhhhhcCchhHHHHhh
Q 020809 234 KPAMDVAIQKALEKKAQAGKWVQPHVETIKAKWIPAVKEQWVVFTTNVEPHVQTLKTKTIEACEATKTAVTPHIIRVQEV 313 (321)
Q Consensus 234 ~p~~~~~~~~~~~k~~~~~~~~~ph~~~~~~k~~p~~~~~~~~~~~~~~p~~q~~~~~~~~~~~~~~~~~~ph~~k~~~~ 313 (321)
.|+-+.+..+.+.....++.=+.|+++.++.++-|++.+ ++..+.||+..++.+-.||.+.-++-+..|++-++..
T Consensus 83 ~P~t~el~~~l~~~~e~Lr~~L~~d~EelR~~l~p~~~e----l~~~l~~~~EelR~kl~P~~eeL~~~~~~~~eeLr~k 158 (165)
T 1gs9_A 83 TPVAEETRARLSKELQAAQARLGADMEDVRGRLVQYRGE----VQAMLGQSTEELRVRLASHLRKLRKRLLRDADDLQKR 158 (165)
T ss_dssp CCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHTSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 344444444444444444444444555555444444333 4555555555555555555555555555555555555
Q ss_pred hcccc
Q 020809 314 VDPYF 318 (321)
Q Consensus 314 ~~py~ 318 (321)
+.||.
T Consensus 159 L~p~~ 163 (165)
T 1gs9_A 159 LAVYQ 163 (165)
T ss_dssp HHHSS
T ss_pred hhhhc
Confidence 55554
No 22
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=96.51 E-value=0.35 Score=41.70 Aligned_cols=42 Identities=19% Similarity=0.366 Sum_probs=16.3
Q ss_pred HHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 53 KIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQK 94 (321)
Q Consensus 53 ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~ 94 (321)
+|..|+.++.+++..++.=.+.-..+-+...++...+..++.
T Consensus 7 Ki~~LekQL~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~~E~ 48 (168)
T 3o0z_A 7 KLSQLQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLES 48 (168)
T ss_dssp ---CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444333344444444444333333
No 23
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=96.49 E-value=0.17 Score=39.87 Aligned_cols=36 Identities=14% Similarity=0.219 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHH
Q 020809 47 LDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAI 82 (321)
Q Consensus 47 l~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i 82 (321)
++.++.++..|....+............+..++...
T Consensus 4 md~iKkKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~ 39 (101)
T 3u59_A 4 MEAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRC 39 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555554444444444444333333
No 24
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Probab=96.43 E-value=0.0029 Score=54.67 Aligned_cols=68 Identities=3% Similarity=0.097 Sum_probs=43.2
Q ss_pred cccchhHHhhhhhhhhhh-------hhhHHHHHhccchhhHHHHhHhHHHHHhhhhhcCchhHHHHhhhcccccc
Q 020809 253 KWVQPHVETIKAKWIPAV-------KEQWVVFTTNVEPHVQTLKTKTIEACEATKTAVTPHIIRVQEVVDPYFQV 320 (321)
Q Consensus 253 ~~~~ph~~~~~~k~~p~~-------~~~~~~~~~~~~p~~q~~~~~~~~~~~~~~~~~~ph~~k~~~~~~py~~~ 320 (321)
.-+.++++.+..++.|+. ......++..+.|++..++.+..||.+..+.-+.||++.++.-+.||+.+
T Consensus 69 d~l~~~~~~l~~~L~P~t~el~~~l~~~~e~Lr~~L~~d~EelR~~l~p~~~el~~~l~~~~EelR~kl~P~~ee 143 (165)
T 1gs9_A 69 KELKAYKSELEEQLTPVAEETRARLSKELQAAQARLGADMEDVRGRLVQYRGEVQAMLGQSTEELRVRLASHLRK 143 (165)
T ss_dssp HHHHHHHHHHTTSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455666666666662 22333356667777777777777777777777777777777777777654
No 25
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=96.38 E-value=0.2 Score=39.54 Aligned_cols=60 Identities=13% Similarity=0.160 Sum_probs=39.9
Q ss_pred chHHHHHHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 41 SPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQ 100 (321)
Q Consensus 41 ~~l~~el~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~q 100 (321)
+.+..+|..++..........+....+++.......+++.+|..+...|..++.+++.++
T Consensus 5 daIKkKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~e 64 (101)
T 3u1c_A 5 DAIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVL 64 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666777777766666666666666666666666666666666666666666666553
No 26
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=96.36 E-value=0.08 Score=43.50 Aligned_cols=49 Identities=16% Similarity=0.278 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 108 AEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDL 156 (321)
Q Consensus 108 eeq~~~~~~RireL~k~Ie~Lk~ele~~~~kk~~LEa~a~e~ekk~~el 156 (321)
+.....++..|..|+.++..++.+...+..+-..|-.-.-.++-.+..+
T Consensus 74 ~~~l~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Ld~EIatY 122 (129)
T 3tnu_B 74 ELALKDARNKLAELEEALQKAKQDMARLLREYQELMNTKLALDVEIATY 122 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555666666666555555544444433333333333333
No 27
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=96.35 E-value=0.085 Score=52.82 Aligned_cols=73 Identities=11% Similarity=0.061 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 020809 126 DNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSR 198 (321)
Q Consensus 126 e~Lk~ele~~~~kk~~LEa~a~e~ekk~~el~~~le~Lek~~~Eqk~~l~elE~~lq~~Eeei~kl~~ea~~~ 198 (321)
+.+.+.+...+.+.+.++......++..++.+...+.+++...+.+..++...+....+.+++..+..+....
T Consensus 505 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l 577 (597)
T 3oja_B 505 DNLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQL 577 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333344444444444444445555555555555555555555555555555555444444433
No 28
>2lem_A Apolipoprotein A-I; lipid transport; NMR {Mus musculus}
Probab=96.33 E-value=0.023 Score=50.74 Aligned_cols=87 Identities=14% Similarity=0.229 Sum_probs=66.7
Q ss_pred HhhCcchHHHHHHHHHHHHHhhccccchhHHhhhhhhhhhhhhhHHHHHhccchhhHHHHhHhHHHHHhhhh--------
Q 020809 230 NAHGKPAMDVAIQKALEKKAQAGKWVQPHVETIKAKWIPAVKEQWVVFTTNVEPHVQTLKTKTIEACEATKT-------- 301 (321)
Q Consensus 230 ~~hg~p~~~~~~~~~~~k~~~~~~~~~ph~~~~~~k~~p~~~~~~~~~~~~~~p~~q~~~~~~~~~~~~~~~-------- 301 (321)
..+-.|+++.+-.++.......+.-..|+++.++.++ ..|+..++..+.||++.++++-.+.++..+.
T Consensus 115 r~~L~Py~~el~~~~~~~~e~Lr~~L~p~~e~lr~kl----~~~~e~lk~~l~P~~ee~~~kl~~~leeL~~~p~~~e~~ 190 (216)
T 2lem_A 115 RQKASPQGAELQESARQKLQELQGRLSPVAEEFRDRM----RTHVDSLRTQLAPHSEQMRESLAQRLAELKSNPTLNEYH 190 (216)
T ss_dssp HHHTSCHHHHHHHHHHCSCCSSCCSCSTHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhHhhHHHHHHHHHHHHHHHhCCcchHHHH
Confidence 4456688888877777777777777788888777765 4455558888888888888887777777776
Q ss_pred -hcCchhHHHHhhhcccccc
Q 020809 302 -AVTPHIIRVQEVVDPYFQV 320 (321)
Q Consensus 302 -~~~ph~~k~~~~~~py~~~ 320 (321)
-|.||++-++.-+.||++.
T Consensus 191 ~ki~~~~e~Lr~~l~P~~ed 210 (216)
T 2lem_A 191 SSAKSHLKSLGEKARPALED 210 (216)
T ss_dssp CCSSSHHHHHHHTSCTTTHH
T ss_pred HHHHHHHHHHHHHhhhhHHH
Confidence 5677999999999999863
No 29
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=96.30 E-value=0.079 Score=43.67 Aligned_cols=111 Identities=16% Similarity=0.198 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 020809 45 IELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQ 124 (321)
Q Consensus 45 ~el~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~qk~~~~~~eeq~~~~~~RireL~k~ 124 (321)
.++.+++.....-...+.....+|.++...|..++.+|..+......|+..|..++ ...+.....++..|..|+.+
T Consensus 17 ~K~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e----~~~~~~l~~~q~~i~~lE~e 92 (131)
T 3tnu_A 17 TKTEELNREVATNSELVQSGKSEISELRRTMQNLEIELQSQLSMKASLENSLEETK----GRYCMQLAQIQEMIGSVEEQ 92 (131)
T ss_dssp ------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333334444444444444444444444444444442 23344444555666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 125 IDNLKKESEKQQKEKEALEARAIEAEKKISDLSAK 159 (321)
Q Consensus 125 Ie~Lk~ele~~~~kk~~LEa~a~e~ekk~~el~~~ 159 (321)
+..++.+...+..+-..|-.-.-.++-.+..+...
T Consensus 93 L~~~r~em~~ql~EYq~Ll~vKl~Ld~EIatYRkL 127 (131)
T 3tnu_A 93 LAQLRCEMEQQNQEYKILLDVKTRLEQEIATYRRL 127 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66666666666544444444444444444444433
No 30
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=96.24 E-value=0.026 Score=49.67 Aligned_cols=106 Identities=8% Similarity=0.152 Sum_probs=44.4
Q ss_pred chhHHHHHHHHHHHHHHhHHHhhCcchHHHHHHHHHHHHHhhccccchhHHhhhhhhhhhhhhhHHHHHhccchhhHHHH
Q 020809 210 LPPWLAVHLLQCQSLIETHWNAHGKPAMDVAIQKALEKKAQAGKWVQPHVETIKAKWIPAVKEQWVVFTTNVEPHVQTLK 289 (321)
Q Consensus 210 l~Pwla~~~~~~~~~~~~~~~~hg~p~~~~~~~~~~~k~~~~~~~~~ph~~~~~~k~~p~~~~~~~~~~~~~~p~~q~~~ 289 (321)
|-|....-..++...+..+....++ -|+.+-.+..-....++.-+.+|++.++.+..|++.+ +++.+.-+++.++
T Consensus 82 L~P~~~e~~~~l~~~~e~lr~~l~k-dlEelr~kL~P~~eEL~~~l~~~~Eelr~~L~Py~ee----lr~kl~~~~eeLr 156 (191)
T 1nfn_A 82 LTPVAEETRARLSKELQAAQARLGA-DMEDVCGRLVQYRGEVQAMLGQSTEELRVRLASHLRK----LRKRLLRDADDLQ 156 (191)
T ss_dssp ----------CHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHH----HHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhHHH----HHHHHHHHHHHHH
Confidence 4444443334444444444333322 1344444444555556666777777777777777555 6666666777777
Q ss_pred hHhHHHHHhhhhhcCchhHHHHhhhcccccc
Q 020809 290 TKTIEACEATKTAVTPHIIRVQEVVDPYFQV 320 (321)
Q Consensus 290 ~~~~~~~~~~~~~~~ph~~k~~~~~~py~~~ 320 (321)
.+..||.+-.++-+.+||+-++..+.||+.+
T Consensus 157 ~~l~P~~eelk~~l~~~veel~~~L~P~~e~ 187 (191)
T 1nfn_A 157 KRLAVYQAGAREGAERGLSAIRERLGPLVEQ 187 (191)
T ss_dssp HHHHHHTC-----------------------
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHhHhHHHH
Confidence 7777888878888888888888888888754
No 31
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=96.19 E-value=0.41 Score=39.24 Aligned_cols=33 Identities=27% Similarity=0.327 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 140 EALEARAIEAEKKISDLSAKLEKLQKINDEQKS 172 (321)
Q Consensus 140 ~~LEa~a~e~ekk~~el~~~le~Lek~~~Eqk~ 172 (321)
..+.++..+.+.....+......++....+.+.
T Consensus 86 ~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~ 118 (129)
T 2fxo_A 86 KEMNKRLEDEEEMNAELTAKKRKLEDECSELKR 118 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333
No 32
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=96.05 E-value=0.63 Score=40.08 Aligned_cols=120 Identities=13% Similarity=0.167 Sum_probs=53.7
Q ss_pred chHHHHHHHHHHHHHHHHHhH-------HHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 020809 41 SPLKIELDQLKSKIRSLESHI-------DEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDK 113 (321)
Q Consensus 41 ~~l~~el~qlk~ki~~Les~i-------~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~qk~~~~~~eeq~~~ 113 (321)
..++.++++++.++..-...- .++...+...+....+++..+..+...-..|+.++..+|.. ...--.-...
T Consensus 9 ~~LekQL~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~-L~qEr~~r~q 87 (168)
T 3o0z_A 9 SQLQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAI-LEAERRDRGH 87 (168)
T ss_dssp -CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 456778888877774333322 23333333333333333333333333333333333333321 0000111123
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 114 AHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLE 161 (321)
Q Consensus 114 ~~~RireL~k~Ie~Lk~ele~~~~kk~~LEa~a~e~ekk~~el~~~le 161 (321)
...++.+|+.-|..|..+++..+.....++...+.+..++..+....+
T Consensus 88 ~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a 135 (168)
T 3o0z_A 88 DSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKN 135 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555666666666666666665555555555554444444443333
No 33
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=95.97 E-value=0.64 Score=39.53 Aligned_cols=84 Identities=19% Similarity=0.323 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 106 NAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAE 185 (321)
Q Consensus 106 ~~eeq~~~~~~RireL~k~Ie~Lk~ele~~~~kk~~LEa~a~e~ekk~~el~~~le~Lek~~~Eqk~~l~elE~~lq~~E 185 (321)
..+++...+..++++|+..+...-+.+......-.....+-...+.++..+..++...+..-..-.+.+..+++.+..++
T Consensus 32 raEERae~aE~k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lE 111 (155)
T 2efr_A 32 RAEERAELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLE 111 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556666666666665555544444333222222222233333333333333333333333333333333333333
Q ss_pred HHHH
Q 020809 186 EEMM 189 (321)
Q Consensus 186 eei~ 189 (321)
+.+.
T Consensus 112 d~L~ 115 (155)
T 2efr_A 112 DELY 115 (155)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 3333
No 34
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=95.97 E-value=0.4 Score=37.68 Aligned_cols=59 Identities=14% Similarity=0.200 Sum_probs=37.5
Q ss_pred chHHHHHHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 41 SPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSL 99 (321)
Q Consensus 41 ~~l~~el~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~ 99 (321)
+++..+|..++..........+....+++.......+.+.+|..+...|..|+.+++.+
T Consensus 5 d~iKkKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~ 63 (101)
T 3u59_A 5 EAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKY 63 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666666666666666666666666666666666666666666665554
No 35
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=95.42 E-value=0.011 Score=52.19 Aligned_cols=60 Identities=8% Similarity=0.082 Sum_probs=29.7
Q ss_pred hHHhhhhhhhhhhhhhHHHHHhccchhhHHHHhHhHHHHHhhhhhcCchhHHHHhhhccccccC
Q 020809 258 HVETIKAKWIPAVKEQWVVFTTNVEPHVQTLKTKTIEACEATKTAVTPHIIRVQEVVDPYFQVY 321 (321)
Q Consensus 258 h~~~~~~k~~p~~~~~~~~~~~~~~p~~q~~~~~~~~~~~~~~~~~~ph~~k~~~~~~py~~~~ 321 (321)
+++.++.+.-|+..+ ++..+.++++.++.+-.||.+..++-+.-|++-++..+.||.++|
T Consensus 107 dlEelr~kL~P~~eE----L~~~l~~~~Eelr~~L~Py~eelr~kl~~~~eeLr~~l~P~~eel 166 (191)
T 1nfn_A 107 DMEDVCGRLVQYRGE----VQAMLGQSTEELRVRLASHLRKLRKRLLRDADDLQKRLAVYQAGA 166 (191)
T ss_dssp HHHHHHHHHHHHHHH----HHHTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHhhHHHHH----HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 344444444443222 444445555555555555555555555555555666666665544
No 36
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=95.34 E-value=0.67 Score=44.65 Aligned_cols=94 Identities=12% Similarity=0.199 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-HHHHHH
Q 020809 48 DQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADE-LEKQID 126 (321)
Q Consensus 48 ~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~qk~~~~~~eeq~~~~~~Rire-L~k~Ie 126 (321)
..++.+|..|...++.+.+--++....+..+-..+.....++...++.+... ..+++.++..++.+|+. |. .|.
T Consensus 63 r~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~q~~dndn~~~e~----s~eLe~~i~~lk~~V~~q~~-~ir 137 (390)
T 1deq_A 63 QDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKANNNDNTFKQI----NEDLRSRIEILRRKVIEQVQ-RIN 137 (390)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccchHHHHHH----HHHHHHHHHHHHHHHHHHhH-HHH
Confidence 3445555555555555555555556666666666666666666666655544 36778888888888887 55 788
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 020809 127 NLKKESEKQQKEKEALEARA 146 (321)
Q Consensus 127 ~Lk~ele~~~~kk~~LEa~a 146 (321)
.|+..|+.+..++..||...
T Consensus 138 ~Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 138 LLQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888766
No 37
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=95.21 E-value=0.054 Score=40.37 Aligned_cols=47 Identities=32% Similarity=0.519 Sum_probs=41.6
Q ss_pred HHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 54 IRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQ 100 (321)
Q Consensus 54 i~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~q 100 (321)
+.+|+..+.....+|..+|..|..+++.|.++...|..|+++++..+
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfr 67 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKYR 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 77788888888888999999999999999999999999999998763
No 38
>2l7b_A Apolipoprotein E, APO-E; lipid transport, atherosclerosis, alzheime disease; NMR {Homo sapiens}
Probab=94.96 E-value=0.099 Score=49.27 Aligned_cols=69 Identities=16% Similarity=0.072 Sum_probs=53.3
Q ss_pred hhccccchhHHhhhhhhhhhh---------------------hhhHHHHHhccchhhHHHHhHhHHHHHhhhhhcCchhH
Q 020809 250 QAGKWVQPHVETIKAKWIPAV---------------------KEQWVVFTTNVEPHVQTLKTKTIEACEATKTAVTPHII 308 (321)
Q Consensus 250 ~~~~~~~ph~~~~~~k~~p~~---------------------~~~~~~~~~~~~p~~q~~~~~~~~~~~~~~~~~~ph~~ 308 (321)
..+.-+.||++-++.+.-|+. +.+..-++..++||+..++....||.+..+..+.|.++
T Consensus 210 ~L~~ki~~~~e~Lr~~L~p~~~~~~~~l~~l~~q~ee~~~ql~~~aeel~~kl~~~~eeLr~~l~P~~e~lk~~l~~l~E 289 (307)
T 2l7b_A 210 PLQERAQAWGERLRARMEEMGSRTRDRLDEVKEQVAEVRAKLEEQAQQIRLQAEAAQARLKSRFEPLAEDMQRQWAGQVE 289 (307)
T ss_dssp CCSSCSCCHHHHHHHHHHHHHHTCSCSSCCCCSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHTTSSC
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 345556777777777777753 55556678888888888888888888888888888888
Q ss_pred HHHhhhcccc
Q 020809 309 RVQEVVDPYF 318 (321)
Q Consensus 309 k~~~~~~py~ 318 (321)
.++..+.||.
T Consensus 290 ~l~~sl~~~~ 299 (307)
T 2l7b_A 290 KVQAAEGTSA 299 (307)
T ss_dssp CCSSSSCSSS
T ss_pred HHHHHhcCCC
Confidence 8888888886
No 39
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=94.95 E-value=0.024 Score=49.33 Aligned_cols=77 Identities=13% Similarity=0.150 Sum_probs=37.3
Q ss_pred chHHHHHHHHHHHHHhhccccchhHHhhhhhhhhhhhhhHHHHHhccchhhHHHHhHhHHHHHhhhhhcCchhHHHHhhh
Q 020809 235 PAMDVAIQKALEKKAQAGKWVQPHVETIKAKWIPAVKEQWVVFTTNVEPHVQTLKTKTIEACEATKTAVTPHIIRVQEVV 314 (321)
Q Consensus 235 p~~~~~~~~~~~k~~~~~~~~~ph~~~~~~k~~p~~~~~~~~~~~~~~p~~q~~~~~~~~~~~~~~~~~~ph~~k~~~~~ 314 (321)
|+++-+..+........+.-..||++.++.++.. ++..++..+.||++.++++..+-.+..+.-+.|+++.++.-+
T Consensus 100 P~~~e~~~~~~~~~e~lr~~l~Py~~el~~~~~~----~~e~Lr~~L~p~~e~lr~~l~~~~e~lk~~l~Py~ee~k~kl 175 (185)
T 3r2p_A 100 PYLDDFQKKWQEEMELYRQKVEPLRAELQEGARQ----KLHELQEKLSPLGEEMRDRARAHVDALRTHLAPYSDELRQRL 175 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHTTTTTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 4444444444444444444455555555554332 223355555555555555555555555555555555554444
Q ss_pred c
Q 020809 315 D 315 (321)
Q Consensus 315 ~ 315 (321)
+
T Consensus 176 ~ 176 (185)
T 3r2p_A 176 A 176 (185)
T ss_dssp H
T ss_pred H
Confidence 3
No 40
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=94.95 E-value=0.34 Score=36.53 Aligned_cols=57 Identities=16% Similarity=0.222 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 43 LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSL 99 (321)
Q Consensus 43 l~~el~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~ 99 (321)
|...+..++..........+.....++..+....+.+.++..+...|..|+.+++.+
T Consensus 4 ikkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ 60 (81)
T 1ic2_A 4 IKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKY 60 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 444444455444444444444444444444444444444444444444444444444
No 41
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=94.93 E-value=0.19 Score=41.98 Aligned_cols=61 Identities=21% Similarity=0.205 Sum_probs=33.4
Q ss_pred CchHHHHHHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 40 SSPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQ 100 (321)
Q Consensus 40 ~~~l~~el~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~q 100 (321)
....+.+.+.++.++..+...+..+..++.+.+.+++++.+++.++..++..|+.++..++
T Consensus 70 l~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le 130 (138)
T 3hnw_A 70 YFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLE 130 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555555555555555555555555555555555555555554443
No 42
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=94.83 E-value=0.31 Score=36.76 Aligned_cols=51 Identities=18% Similarity=0.261 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 49 QLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSL 99 (321)
Q Consensus 49 qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~ 99 (321)
.++.++..|+...+....++......+...+......+..|..|+..|..+
T Consensus 3 ~ikkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~l 53 (81)
T 1ic2_A 3 AIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGT 53 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 456666666666666655555555555555544444444444444444333
No 43
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=94.83 E-value=0.75 Score=46.04 Aligned_cols=98 Identities=11% Similarity=0.113 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 020809 47 LDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQID 126 (321)
Q Consensus 47 l~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~qk~~~~~~eeq~~~~~~RireL~k~Ie 126 (321)
=.++...|++|..+++++.+.-++.+..+..+-..+.....+.....+.+.. -..+|+.++..++.+|..--..|.
T Consensus 59 ErDltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~dNdNtynE----~S~ELRRrIqyLKekVdnQlsnIr 134 (562)
T 3ghg_A 59 NQDFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANNRDNTYNR----VSEDLRSRIEVLKRKVIEKVQHIQ 134 (562)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHH----TTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccchhHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555544455555544444444444444433333322 234667777777777766446677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 020809 127 NLKKESEKQQKEKEALEARAIE 148 (321)
Q Consensus 127 ~Lk~ele~~~~kk~~LEa~a~e 148 (321)
.|+.-|+.+..+++.||.....
T Consensus 135 vLQsnLedq~~kIQRLEvDIdi 156 (562)
T 3ghg_A 135 LLQKNVRAQLVDMKRLEVDIDI 156 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777765443
No 44
>2lem_A Apolipoprotein A-I; lipid transport; NMR {Mus musculus}
Probab=94.78 E-value=0.6 Score=41.41 Aligned_cols=88 Identities=15% Similarity=0.198 Sum_probs=52.4
Q ss_pred hCcchHHHHHHHHHHHHHhhccccchhHHhhhhhhhhh-------hhhhHHHHHhccchhhHHHHhHhHHHHHhhhhhcC
Q 020809 232 HGKPAMDVAIQKALEKKAQAGKWVQPHVETIKAKWIPA-------VKEQWVVFTTNVEPHVQTLKTKTIEACEATKTAVT 304 (321)
Q Consensus 232 hg~p~~~~~~~~~~~k~~~~~~~~~ph~~~~~~k~~p~-------~~~~~~~~~~~~~p~~q~~~~~~~~~~~~~~~~~~ 304 (321)
.-.|+++.+..+........+.-..||++.+++++..- +.|+-..++..+..+++.++..-.||.+..++-+.
T Consensus 95 ~l~py~~el~~~~~~~~e~lr~~L~Py~~el~~~~~~~~e~Lr~~L~p~~e~lr~kl~~~~e~lk~~l~P~~ee~~~kl~ 174 (216)
T 2lem_A 95 KVQPYLDEFQKKWKEDVELYRQKASPQGAELQESARQKLQELQGRLSPVAEEFRDRMRTHVDSLRTQLAPHSEQMRESLA 174 (216)
T ss_dssp HTTTTCCHHHHHHHHHHHHHHHHTSCHHHHHHHHHHCSCCSSCCSCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHH
Confidence 35577777777766666667777777776666655442 22222224444445555555555666666666666
Q ss_pred chhHHHHhhhccccccC
Q 020809 305 PHIIRVQEVVDPYFQVY 321 (321)
Q Consensus 305 ph~~k~~~~~~py~~~~ 321 (321)
.|+..++.. ||+.+|
T Consensus 175 ~~leeL~~~--p~~~e~ 189 (216)
T 2lem_A 175 QRLAELKSN--PTLNEY 189 (216)
T ss_dssp HHHHHHHHC--CCCCCC
T ss_pred HHHHHHhCC--cchHHH
Confidence 666666666 776665
No 45
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=94.55 E-value=0.93 Score=35.65 Aligned_cols=75 Identities=16% Similarity=0.244 Sum_probs=33.9
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H------h----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 69 KGKDEVVAQKEKAIQDKSERIVSLQKELSSLQK-K------E----TLNAAEQVDKAHARADELEKQIDNLKKESEKQQK 137 (321)
Q Consensus 69 k~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~qk-~------~----~~~~eeq~~~~~~RireL~k~Ie~Lk~ele~~~~ 137 (321)
.++...|..+...+..+..+|..+...+..+.. . + ........+....++..+...+..+..++...+.
T Consensus 13 ~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~~~g~~CPvCgs~l~~~~~~~~i~~~~~~l~~l~~~i~~l~~~i~~l~~ 92 (112)
T 1l8d_A 13 TTIEEERNEITQRIGELKNKIGDLKTAIEELKKAKGKCPVCGRELTDEHREELLSKYHLDLNNSKNTLAKLIDRKSELER 92 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECTTTCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444455555555555555543 1 1 1222333444444555555555555555544444
Q ss_pred HHHHHH
Q 020809 138 EKEALE 143 (321)
Q Consensus 138 kk~~LE 143 (321)
.+..|.
T Consensus 93 ~~~~l~ 98 (112)
T 1l8d_A 93 ELRRID 98 (112)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444333
No 46
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=94.27 E-value=1.5 Score=34.35 Aligned_cols=58 Identities=22% Similarity=0.334 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 44 KIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQK 101 (321)
Q Consensus 44 ~~el~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~qk 101 (321)
.++++.++.++..|++..+.+..++..+...+..-...-...+.....++.+++.+..
T Consensus 4 ~~~~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTa 61 (97)
T 2eqb_B 4 GSNYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTA 61 (97)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777777777777777777777777666666667777777777766644
No 47
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=94.16 E-value=0.19 Score=38.09 Aligned_cols=59 Identities=31% Similarity=0.354 Sum_probs=54.0
Q ss_pred CCchHHHHHHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 39 DSSPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELS 97 (321)
Q Consensus 39 ~~~~l~~el~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~ 97 (321)
++..+-+++++|+.++.+++++.......|+.-.++|..++..+..+...|.-|++++.
T Consensus 20 ~~E~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~l~ 78 (81)
T 3qh9_A 20 KAEELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQLS 78 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 45578899999999999999999999999999999999999999999999999988874
No 48
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=94.16 E-value=2.2 Score=35.80 Aligned_cols=6 Identities=17% Similarity=0.224 Sum_probs=2.1
Q ss_pred HHHHHH
Q 020809 117 RADELE 122 (321)
Q Consensus 117 RireL~ 122 (321)
|+..|+
T Consensus 53 r~~~lE 58 (147)
T 2b9c_A 53 KMEIQE 58 (147)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 49
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=93.97 E-value=2.5 Score=35.80 Aligned_cols=39 Identities=5% Similarity=0.022 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 156 LSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFE 194 (321)
Q Consensus 156 l~~~le~Lek~~~Eqk~~l~elE~~lq~~Eeei~kl~~e 194 (321)
+|.-+..........+.+.+.++..+...+..+..++.+
T Consensus 99 AN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l~~lq~q 137 (154)
T 2ocy_A 99 ANNMVADARKEKYAIEILNKRLTEQLREKDTLLDTLTLQ 137 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333334444444444444444444444333
No 50
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=93.95 E-value=2 Score=35.03 Aligned_cols=23 Identities=17% Similarity=0.359 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 020809 77 QKEKAIQDKSERIVSLQKELSSL 99 (321)
Q Consensus 77 q~ek~i~e~~~~I~~Lq~eI~~~ 99 (321)
....+|.++...|..|+.+|+++
T Consensus 33 ~~k~Ei~elrr~iq~L~~el~~l 55 (129)
T 3tnu_B 33 NTKHEISEMNRMIQRLRAEIDNV 55 (129)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444454444444
No 51
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=93.94 E-value=1.5 Score=35.28 Aligned_cols=82 Identities=18% Similarity=0.210 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 79 EKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSA 158 (321)
Q Consensus 79 ek~i~e~~~~I~~Lq~eI~~~qk~~~~~~eeq~~~~~~RireL~k~Ie~Lk~ele~~~~kk~~LEa~a~e~ekk~~el~~ 158 (321)
++...++......|..++++... .+.......+..+..|+++|..|....+.....+..||..-.+++........
T Consensus 2 Ek~~rdL~~~~~~L~~E~e~~k~----K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~ 77 (111)
T 2v66_B 2 EQRNRDLQADNQRLKYEVEALKE----KLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIV 77 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHh
Confidence 45556666666666666666632 33334444555666666666666666666666666666666666654444444
Q ss_pred HHHHHH
Q 020809 159 KLEKLQ 164 (321)
Q Consensus 159 ~le~Le 164 (321)
-+++++
T Consensus 78 SLeD~E 83 (111)
T 2v66_B 78 SLEDFE 83 (111)
T ss_dssp HHHHHH
T ss_pred hHHHHH
Confidence 444443
No 52
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=93.67 E-value=0.89 Score=37.83 Aligned_cols=9 Identities=22% Similarity=0.541 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 020809 50 LKSKIRSLE 58 (321)
Q Consensus 50 lk~ki~~Le 58 (321)
+..++.++.
T Consensus 37 vd~km~ei~ 45 (138)
T 3hnw_A 37 INNKITEFN 45 (138)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 333333333
No 53
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=93.51 E-value=2.4 Score=34.02 Aligned_cols=87 Identities=18% Similarity=0.257 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 020809 47 LDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQID 126 (321)
Q Consensus 47 l~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~qk~~~~~~eeq~~~~~~RireL~k~Ie 126 (321)
..+|+.+...|....++. ..+..+.. .+-...|+.|+.+|..+... ...+..++|+|+-.=+
T Consensus 5 ~rdL~~~~~~L~~E~e~~-------k~K~~~~~---~e~~~~~~~Lq~El~~lr~~--------~~~l~~~iReLEq~ND 66 (111)
T 2v66_B 5 NRDLQADNQRLKYEVEAL-------KEKLEHQY---AQSYKQVSVLEDDLSQTRAI--------KEQLHKYVRELEQAND 66 (111)
T ss_dssp HHHHHHHHHHHHHHHHHH-------HHHHHHHH---HHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHH---HHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHhch
Confidence 444555555555544444 44444333 23345666677777666431 2244556666665555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 127 NLKKESEKQQKEKEALEARAIEAEK 151 (321)
Q Consensus 127 ~Lk~ele~~~~kk~~LEa~a~e~ek 151 (321)
+|...-+-...-+..++.+.+.+-.
T Consensus 67 DLER~~R~t~~SLeD~E~k~n~aiE 91 (111)
T 2v66_B 67 DLERAKRATIVSLEDFEQRLNQAIE 91 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 5554444444444444444444333
No 54
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=93.51 E-value=1.9 Score=35.28 Aligned_cols=28 Identities=25% Similarity=0.337 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 72 DEVVAQKEKAIQDKSERIVSLQKELSSL 99 (321)
Q Consensus 72 d~~I~q~ek~i~e~~~~I~~Lq~eI~~~ 99 (321)
...+.....+|.++...|..|+.+|+++
T Consensus 30 ~~~l~~~k~Ei~elrr~iq~L~~el~~l 57 (131)
T 3tnu_A 30 SELVQSGKSEISELRRTMQNLEIELQSQ 57 (131)
T ss_dssp -----------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444445555555555444
No 55
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=93.38 E-value=2.6 Score=33.99 Aligned_cols=61 Identities=13% Similarity=0.153 Sum_probs=32.8
Q ss_pred CCchHHHHHHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 39 DSSPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSL 99 (321)
Q Consensus 39 ~~~~l~~el~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~ 99 (321)
...-+...|.+++.+|..+......+.-+++.....++.......+--..-..++++|..+
T Consensus 14 ~~~~ye~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~l 74 (119)
T 3ol1_A 14 LGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSF 74 (119)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 3445666777777777777666666655555555555554444433333333344444333
No 56
>2l7b_A Apolipoprotein E, APO-E; lipid transport, atherosclerosis, alzheime disease; NMR {Homo sapiens}
Probab=93.35 E-value=0.13 Score=48.50 Aligned_cols=62 Identities=6% Similarity=0.163 Sum_probs=31.4
Q ss_pred chhHHhhhhhhhhhhhhhHHHHHhccchhhHHHHhHhHHHHHhhhhhcCchhHHHHhhhccccccC
Q 020809 256 QPHVETIKAKWIPAVKEQWVVFTTNVEPHVQTLKTKTIEACEATKTAVTPHIIRVQEVVDPYFQVY 321 (321)
Q Consensus 256 ~ph~~~~~~k~~p~~~~~~~~~~~~~~p~~q~~~~~~~~~~~~~~~~~~ph~~k~~~~~~py~~~~ 321 (321)
.-|++.++.+..|+..+ +++.+.-.++.++.+-.||.+-.++-+..||+.++..+.||..+|
T Consensus 135 ~~~~eelr~kL~Py~~E----L~~~~~~~~eeLr~~L~py~eeLr~kl~~~veelr~~L~Py~e~~ 196 (307)
T 2l7b_A 135 GQSTEELRVRLASHLRK----LRKRLLRDADDLQKRLAVYQAGAREGAERGLSAIRERLGPLVEQG 196 (307)
T ss_dssp SCCSHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHTSCCSSHHHHHHHHHHHHCSSSCTTT
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 33444444444444333 444444444445555555555555555556666666666666543
No 57
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=92.90 E-value=1.6 Score=34.93 Aligned_cols=19 Identities=21% Similarity=0.476 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHhHHHH
Q 020809 46 ELDQLKSKIRSLESHIDEK 64 (321)
Q Consensus 46 el~qlk~ki~~Les~i~e~ 64 (321)
+++.|+.++...+..+...
T Consensus 25 ei~~L~~~L~~AEeaL~~K 43 (110)
T 2v4h_A 25 QLEDLRQQLQQAEEALVAK 43 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455555444444444443
No 58
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=92.78 E-value=3.8 Score=40.39 Aligned_cols=102 Identities=12% Similarity=0.181 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 020809 43 LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELE 122 (321)
Q Consensus 43 l~~el~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~qk~~~~~~eeq~~~~~~RireL~ 122 (321)
+..+=.....+|..|...+.+..+--......+..+-..+.....++...++.+... ..+++.++..++.+|..==
T Consensus 56 L~kqerdv~~rI~kLkn~L~~~s~s~~~s~~y~~~~~~~lk~~~~q~~dndn~~~e~----S~eLe~ri~yIK~kVd~qi 131 (491)
T 1m1j_A 56 IDDTDQNYSQRIDNIRQQLADSQNKYKTSNRVIVETINILKPGLEGAQQLDENYGHV----STELRRRIVTLKQRVATQV 131 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhhhccchhHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 344455667778888888888888778888888888888888888877777777665 3677787888888877722
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 123 KQIDNLKKESEKQQKEKEALEARAIE 148 (321)
Q Consensus 123 k~Ie~Lk~ele~~~~kk~~LEa~a~e 148 (321)
..|..|+.-|+.+..++..||.....
T Consensus 132 ~~IrvLq~~l~~q~skIQRLE~dI~~ 157 (491)
T 1m1j_A 132 NRIKALQNSIQEQVVEMKRLEVDIDI 157 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66888888888888888877765443
No 59
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=92.36 E-value=2 Score=32.73 Aligned_cols=51 Identities=14% Similarity=0.188 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 49 QLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSL 99 (321)
Q Consensus 49 qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~ 99 (321)
+|+.+|..+......+.-+++.....++.......+=-..-..++++|..+
T Consensus 4 eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~L 54 (86)
T 3swk_A 4 ELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSF 54 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444333333333333333333333333333333333344444444
No 60
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=92.34 E-value=4.2 Score=40.26 Aligned_cols=10 Identities=40% Similarity=0.694 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 020809 156 LSAKLEKLQK 165 (321)
Q Consensus 156 l~~~le~Lek 165 (321)
++.++..|+.
T Consensus 180 l~~ki~~l~~ 189 (464)
T 1m1j_B 180 LHKKIQKLEN 189 (464)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 61
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=92.23 E-value=2.5 Score=32.35 Aligned_cols=56 Identities=21% Similarity=0.306 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 73 EVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLK 129 (321)
Q Consensus 73 ~~I~q~ek~i~e~~~~I~~Lq~eI~~~qk~~~~~~eeq~~~~~~RireL~k~Ie~Lk 129 (321)
..+...+....+++.....|..+.+.++.. ..+++++...+.++-.+|+.+|..+.
T Consensus 28 e~l~k~e~~rkele~~~~~l~~ek~~L~~q-l~eaEe~~~~L~~~K~eLE~~l~el~ 83 (89)
T 3bas_A 28 EDLAKTERIKKELEEQNVTLLEQKNDLFGS-MKQLEDKVEELLSKNYHLENEVARLK 83 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333334444444444443333321 33444444444444444444444443
No 62
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=90.95 E-value=6.2 Score=32.93 Aligned_cols=51 Identities=18% Similarity=0.242 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 49 QLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSL 99 (321)
Q Consensus 49 qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~ 99 (321)
.+......|.+........+.........++..+.+++.....|+..+..+
T Consensus 26 ~l~~eN~~Lk~e~e~l~~~~~~~~~~~~eL~~~~~~Le~~n~~L~~~lke~ 76 (155)
T 2oto_A 26 RLRHENKDLKARLENAMEVAGRDFKRAEELEKAKQALEDQRKDLETKLKEL 76 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555544444444444444455555555555555555444333
No 63
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=90.72 E-value=4 Score=34.45 Aligned_cols=56 Identities=27% Similarity=0.300 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 45 IELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQ 100 (321)
Q Consensus 45 ~el~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~q 100 (321)
+..+.....|..|++....+..+|+.++..|....+.+..+.+++..|+-+.+.++
T Consensus 61 s~~~~~~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE 116 (152)
T 3a7p_A 61 SHDDALLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQ 116 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555666666666666666666666666666666666666666665555553
No 64
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=90.71 E-value=3.5 Score=41.25 Aligned_cols=40 Identities=20% Similarity=0.224 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 141 ALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERA 180 (321)
Q Consensus 141 ~LEa~a~e~ekk~~el~~~le~Lek~~~Eqk~~l~elE~~ 180 (321)
+|+.+...++.++...-+.+..|+..+++|..+|++||-+
T Consensus 114 ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvD 153 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVD 153 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444455555555555555555555544
No 65
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=90.65 E-value=3.9 Score=34.50 Aligned_cols=59 Identities=22% Similarity=0.225 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 44 KIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKK 102 (321)
Q Consensus 44 ~~el~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~qk~ 102 (321)
.+.+..++..+..++..+..+..+++++...+..++.++..+.-+.+.++..+..++.+
T Consensus 67 ~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~E 125 (152)
T 3a7p_A 67 LNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKE 125 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555555555555555555555555555443
No 66
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=90.61 E-value=2.8 Score=32.67 Aligned_cols=57 Identities=23% Similarity=0.226 Sum_probs=29.6
Q ss_pred hhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 68 LKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQ 136 (321)
Q Consensus 68 Lk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~qk~~~~~~eeq~~~~~~RireL~k~Ie~Lk~ele~~~ 136 (321)
++.+...+..++..+..++..|+.|..+|...+. + - .+|..|+-+++-++.+-..-+
T Consensus 4 ~~~L~~~L~~aEeaL~~kq~~id~lke~~~q~~~----~-~-------E~i~vLk~Qv~IY~~DF~aER 60 (94)
T 3jsv_C 4 LEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKI----V-M-------ETVPVLKAQADIYKADFQAER 60 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H-H-------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH----H-H-------HHHHHHHHHHHHHHHHHHHHH
Confidence 3444555556666666666666666665554422 1 1 245555555555554444443
No 67
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=90.44 E-value=4.6 Score=30.59 Aligned_cols=57 Identities=25% Similarity=0.416 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 75 VAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKES 132 (321)
Q Consensus 75 I~q~ek~i~e~~~~I~~Lq~eI~~~qk~~~~~~eeq~~~~~~RireL~k~Ie~Lk~el 132 (321)
+++++..|+..-..|..|+-+|+.++. +-..+....+.+......|..++..|+.+.
T Consensus 8 leqLE~KIq~avdtI~lLqmEieELKe-kN~~L~~e~~e~~~~~~~L~~en~qLk~E~ 64 (81)
T 2jee_A 8 FEKLEAKVQQAIDTITLLQMEIEELKE-KNNSLSQEVQNAQHQREELERENNHLKEQQ 64 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 455566666666666666666666633 223333333333333333444444444333
No 68
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=89.42 E-value=16 Score=36.16 Aligned_cols=9 Identities=56% Similarity=0.630 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 020809 172 SKIRKTERA 180 (321)
Q Consensus 172 ~~l~elE~~ 180 (321)
.+|+.++..
T Consensus 182 ~ki~~l~~~ 190 (464)
T 1m1j_B 182 KKIQKLENA 190 (464)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333344333
No 69
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=89.29 E-value=6.6 Score=30.71 Aligned_cols=59 Identities=14% Similarity=0.293 Sum_probs=34.3
Q ss_pred CCchHHHHHHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 39 DSSPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELS 97 (321)
Q Consensus 39 ~~~~l~~el~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~ 97 (321)
++..++.++.+++.+....+..+..+..++..-...-..+++....++.++..|-..+-
T Consensus 6 ~~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLF 64 (97)
T 2eqb_B 6 NYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLF 64 (97)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455556666666666666666666666655555555555555555555555555543
No 70
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=88.90 E-value=15 Score=35.39 Aligned_cols=25 Identities=24% Similarity=0.268 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 166 INDEQKSKIRKTERALKVAEEEMMR 190 (321)
Q Consensus 166 ~~~Eqk~~l~elE~~lq~~Eeei~k 190 (321)
.+.|++..|-++++.++.++.++.+
T Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (471)
T 3mq9_A 444 KVEELEGEITTLNHKLQDASAEVER 468 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444433
No 71
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=88.89 E-value=4.5 Score=30.70 Aligned_cols=51 Identities=16% Similarity=0.221 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 110 QVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKL 160 (321)
Q Consensus 110 q~~~~~~RireL~k~Ie~Lk~ele~~~~kk~~LEa~a~e~ekk~~el~~~l 160 (321)
+...++..|..|+.++..++.+++.+..+-..|-.-.-.++..++.+...+
T Consensus 29 ~l~~~q~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~Le~EIatYRkLL 79 (86)
T 1x8y_A 29 ERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLL 79 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 334444455555555555555555555444444444444444444444443
No 72
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=88.64 E-value=9.7 Score=36.92 Aligned_cols=39 Identities=18% Similarity=0.091 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 153 ISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRA 191 (321)
Q Consensus 153 ~~el~~~le~Lek~~~Eqk~~l~elE~~lq~~Eeei~kl 191 (321)
.+......+.+.+..+.++..++++......+.+.+..+
T Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (487)
T 3oja_A 437 WDMYQHKETQLAEENARLKKLNGEADLALASANATLQEL 475 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHH
Confidence 333444444444444445555555555554444444444
No 73
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=88.50 E-value=5.2 Score=32.44 Aligned_cols=27 Identities=11% Similarity=0.282 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 75 VAQKEKAIQDKSERIVSLQKELSSLQK 101 (321)
Q Consensus 75 I~q~ek~i~e~~~~I~~Lq~eI~~~qk 101 (321)
..+.+..+..+...|..|+.+++....
T Consensus 35 ~~E~q~~v~ql~~~i~~Le~eL~e~r~ 61 (120)
T 3i00_A 35 KTESQRVVLQLKGHVSELEADLAEQQH 61 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666666666543
No 74
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=88.46 E-value=19 Score=35.74 Aligned_cols=99 Identities=19% Similarity=0.208 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 86 SERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQK 165 (321)
Q Consensus 86 ~~~I~~Lq~eI~~~qk~~~~~~eeq~~~~~~RireL~k~Ie~Lk~ele~~~~kk~~LEa~a~e~ekk~~el~~~le~Lek 165 (321)
+.+++.-|.++.+.|+... ++ ....++.+.+++..=..++++.+.++.+-+. ....-+..+...+..++.-++
T Consensus 8 q~~la~yq~elarvqkana-~a---ka~Ye~~~ae~~a~n~~i~aeNeaikkrNa~---aka~Ye~~l~kY~~dlakY~~ 80 (497)
T 3iox_A 8 QAKLTAYQTELARVQKANA-DA---KAAYEAAVAANNAANAALTAENTAIKKRNAD---AKADYEAKLAKYQADLAKYQK 80 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-HH---HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 4566667777777766421 11 2234445555555555566666666633322 223334456677777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 166 INDEQKSKIRKTERALKVAEEEMMRA 191 (321)
Q Consensus 166 ~~~Eqk~~l~elE~~lq~~Eeei~kl 191 (321)
..++++.++..-+..++.+...+.++
T Consensus 81 ~~AeY~~kl~aYe~~~~~~~k~lae~ 106 (497)
T 3iox_A 81 DLADYPVKLKAYEDEQTSIKAALAEL 106 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888887777777776665
No 75
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=87.91 E-value=8.2 Score=30.08 Aligned_cols=35 Identities=17% Similarity=0.380 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 108 AEQVDKAHARADELEKQIDNLKKESEKQQKEKEAL 142 (321)
Q Consensus 108 eeq~~~~~~RireL~k~Ie~Lk~ele~~~~kk~~L 142 (321)
++-...++.|+..++..|..|...+.....+..++
T Consensus 69 ~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~l 103 (117)
T 2zqm_A 69 DKAVAELKEKIETLEVRLNALERQEKKLNEKLKEL 103 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444333333
No 76
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=87.86 E-value=1.8 Score=32.57 Aligned_cols=52 Identities=19% Similarity=0.261 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 140 EALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRA 191 (321)
Q Consensus 140 ~~LEa~a~e~ekk~~el~~~le~Lek~~~Eqk~~l~elE~~lq~~Eeei~kl 191 (321)
..++.|..++|.+++-....++.|...+.+|+..|+.+.+.+..+-..+..+
T Consensus 10 ~~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~ 61 (78)
T 3efg_A 10 QELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKV 61 (78)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4678888888899999999999999999999999999998887776665554
No 77
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=86.64 E-value=4.2 Score=28.27 Aligned_cols=9 Identities=44% Similarity=0.656 Sum_probs=4.6
Q ss_pred HHHHHHHHH
Q 020809 111 VDKAHARAD 119 (321)
Q Consensus 111 ~~~~~~Rir 119 (321)
...++.|+.
T Consensus 41 A~RAN~RlD 49 (52)
T 1jcd_A 41 AARANQRAD 49 (52)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhhh
Confidence 345555654
No 78
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=86.20 E-value=9 Score=28.80 Aligned_cols=74 Identities=18% Similarity=0.263 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 83 QDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKL 160 (321)
Q Consensus 83 ~e~~~~I~~Lq~eI~~~qk~~~~~~eeq~~~~~~RireL~k~Ie~Lk~ele~~~~kk~~LEa~a~e~ekk~~el~~~l 160 (321)
..+......|++.|..++. ..+.....++..|..|+.++..++.+.+.+..+-..|-.-.-.++..++.+...+
T Consensus 4 ~~l~~~~~sLE~~l~e~e~----~~~~~~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~EIatYRkLL 77 (84)
T 1gk4_A 4 DALKGTNESLERQMREMEE----NFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLL 77 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3444444555555554432 2333344455555556666666666665555444444444444444444444443
No 79
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=85.89 E-value=4.1 Score=28.37 Aligned_cols=54 Identities=11% Similarity=0.164 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 45 IELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSS 98 (321)
Q Consensus 45 ~el~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~ 98 (321)
..+..++..+...+...+.....+.+....+++.-..++.....|..++.+|..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~qi~~ 58 (60)
T 3htk_A 5 NTKKTLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQNEY 58 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455666666666666666666666666667777666666666777766666643
No 80
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=85.87 E-value=9.8 Score=28.93 Aligned_cols=73 Identities=10% Similarity=0.129 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 020809 45 IELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARA 118 (321)
Q Consensus 45 ~el~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~qk~~~~~~eeq~~~~~~Ri 118 (321)
.++..+..++..++..+.......+++......+..+.+++..+++..+...+.+.+ ...+++.++..++.|+
T Consensus 14 eEm~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~-~K~eLE~~l~el~~rl 86 (89)
T 3bas_A 14 EEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLS-KNYHLENEVARLKKLV 86 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHh
Confidence 344445555555555555555555555555555555555555554444444444433 2244455444444443
No 81
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=85.80 E-value=11 Score=29.35 Aligned_cols=13 Identities=8% Similarity=0.248 Sum_probs=4.8
Q ss_pred HHHHHHHHhHHHH
Q 020809 52 SKIRSLESHIDEK 64 (321)
Q Consensus 52 ~ki~~Les~i~e~ 64 (321)
.+...+..++..+
T Consensus 13 ~~~~~l~~~~~~l 25 (117)
T 2zqm_A 13 GQLESYQQQLQLV 25 (117)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 82
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=84.73 E-value=1.2 Score=32.67 Aligned_cols=41 Identities=27% Similarity=0.354 Sum_probs=28.4
Q ss_pred HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 61 IDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQK 101 (321)
Q Consensus 61 i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~qk 101 (321)
.++....|+.+|..|.+++..++.+...|..|.++++..+.
T Consensus 13 ~e~~~~~i~~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~qs 53 (67)
T 1zxa_A 13 EEDFAKILMLKEERIKELEKRLSEKEEEIQELKRKLHKCQS 53 (67)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555667777888888888888888888888888777643
No 83
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=84.65 E-value=30 Score=33.41 Aligned_cols=12 Identities=33% Similarity=0.390 Sum_probs=4.4
Q ss_pred HHHHHHHHHHHH
Q 020809 72 DEVVAQKEKAIQ 83 (321)
Q Consensus 72 d~~I~q~ek~i~ 83 (321)
+..+...+..+.
T Consensus 373 e~~~~~~~~~~~ 384 (487)
T 3oja_A 373 DEQVSNGRRAHA 384 (487)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 333333333333
No 84
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=84.42 E-value=18 Score=30.59 Aligned_cols=35 Identities=9% Similarity=0.175 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 157 SAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRA 191 (321)
Q Consensus 157 ~~~le~Lek~~~Eqk~~l~elE~~lq~~Eeei~kl 191 (321)
+.....++..+...+.++.+.+.-+...+.++..+
T Consensus 107 r~~~~~~e~r~~~L~~ql~e~~~~l~~lq~ql~~L 141 (154)
T 2ocy_A 107 RKEKYAIEILNKRLTEQLREKDTLLDTLTLQLKNL 141 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444
No 85
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=84.19 E-value=31 Score=33.21 Aligned_cols=38 Identities=13% Similarity=0.184 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 114 AHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEK 151 (321)
Q Consensus 114 ~~~RireL~k~Ie~Lk~ele~~~~kk~~LEa~a~e~ek 151 (321)
++.=..+|++.|..|+..+..+-..+..|+.-...+-.
T Consensus 111 ~~e~s~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~ 148 (390)
T 1deq_A 111 FKQINEDLRSRIEILRRKVIEQVQRINLLQKNVRDQLV 148 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 33334445555555555555554444444433333333
No 86
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=83.89 E-value=6.1 Score=30.64 Aligned_cols=22 Identities=9% Similarity=0.336 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 020809 114 AHARADELEKQIDNLKKESEKQ 135 (321)
Q Consensus 114 ~~~RireL~k~Ie~Lk~ele~~ 135 (321)
++..+..|+.++..++.+.+.+
T Consensus 42 ~q~~i~~lE~eL~~~r~e~~~q 63 (95)
T 3mov_A 42 SRRMLTDKEREMAEIRDQMQQQ 63 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444433
No 87
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=83.18 E-value=37 Score=33.43 Aligned_cols=42 Identities=17% Similarity=0.332 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 140 EALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERAL 181 (321)
Q Consensus 140 ~~LEa~a~e~ekk~~el~~~le~Lek~~~Eqk~~l~elE~~l 181 (321)
.+|+.+...+..++...-+.+..|+..+..|..+|+.||.+.
T Consensus 114 ~eLe~ri~yIK~kVd~qi~~IrvLq~~l~~q~skIQRLE~dI 155 (491)
T 1m1j_A 114 TELRRRIVTLKQRVATQVNRIKALQNSIQEQVVEMKRLEVDI 155 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444555666666666666666666554
No 88
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=82.92 E-value=3.1 Score=31.18 Aligned_cols=47 Identities=19% Similarity=0.227 Sum_probs=23.2
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHH
Q 020809 42 PLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSER 88 (321)
Q Consensus 42 ~l~~el~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~ 88 (321)
.+...|.+|+.+++-.+..|+++|+.+-.-...|+.++..+..+...
T Consensus 11 ~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~r 57 (78)
T 3efg_A 11 ELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLED 57 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556666666655555555444444444444444333333333
No 89
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=82.89 E-value=23 Score=30.80 Aligned_cols=16 Identities=13% Similarity=0.333 Sum_probs=13.7
Q ss_pred HHHHHHHhHHHhhCcc
Q 020809 220 QCQSLIETHWNAHGKP 235 (321)
Q Consensus 220 ~~~~~~~~~~~~hg~p 235 (321)
++..++...|.+.|..
T Consensus 175 H~RreK~~rw~e~~~~ 190 (192)
T 2p22_C 175 HLRREKLATWDKQGNL 190 (192)
T ss_dssp HHHHHHHHHHTTCSCB
T ss_pred HHHHHHHHHHHhcccc
Confidence 7888899999999864
No 90
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=82.67 E-value=2.8 Score=34.80 Aligned_cols=26 Identities=8% Similarity=0.300 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 74 VVAQKEKAIQDKSERIVSLQKELSSL 99 (321)
Q Consensus 74 ~I~q~ek~i~e~~~~I~~Lq~eI~~~ 99 (321)
.++++.+.+.....++..|...+..-
T Consensus 33 ~l~~l~~~l~~~~~e~~~L~~~l~eE 58 (135)
T 2e7s_A 33 DYNTLKRELSDRDDEVKRLREDIAKE 58 (135)
T ss_dssp HHHHHHHHTTTHHHHHHTHHHHHHHT
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34444444445555555555554433
No 91
>2nrj_A HBL B protein; enterotoxin, hemolysis, transmembrane, structural genomics, PSI-2, protein structure initiative; 2.03A {Bacillus cereus} SCOP: h.4.4.2
Probab=82.43 E-value=28 Score=32.83 Aligned_cols=26 Identities=15% Similarity=-0.020 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHhhccccchhHHhhh
Q 020809 238 DVAIQKALEKKAQAGKWVQPHVETIK 263 (321)
Q Consensus 238 ~~~~~~~~~k~~~~~~~~~ph~~~~~ 263 (321)
..-+..|...|..+++.|+-+.+-++
T Consensus 310 ~~~L~~a~~~W~~l~~~a~~l~~~~~ 335 (346)
T 2nrj_A 310 KPNLNAAKDSWKTLRTDAVTLKEGIK 335 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhh
Confidence 44456666777777777666665554
No 92
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=82.23 E-value=36 Score=32.61 Aligned_cols=40 Identities=15% Similarity=0.211 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 020809 157 SAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEAT 196 (321)
Q Consensus 157 ~~~le~Lek~~~Eqk~~l~elE~~lq~~Eeei~kl~~ea~ 196 (321)
-.+.+.|++.+.++.++++++|.+...++.++..+.++..
T Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (471)
T 3mq9_A 428 MALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVE 467 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666666666666666666655554443
No 93
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=82.20 E-value=14 Score=27.92 Aligned_cols=34 Identities=12% Similarity=0.315 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 121 LEKQIDNLKKESEKQQKEKEALEARAIEAEKKIS 154 (321)
Q Consensus 121 L~k~Ie~Lk~ele~~~~kk~~LEa~a~e~ekk~~ 154 (321)
++..+..|++.+....-.+..||.+..++...+.
T Consensus 47 ~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~ 80 (86)
T 3swk_A 47 AENTLQSFRQDVDNASLARLDLERKVESLQEEIA 80 (86)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444555555444444433
No 94
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=81.98 E-value=11 Score=30.74 Aligned_cols=25 Identities=40% Similarity=0.497 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHhHHHHHHhhhcHHH
Q 020809 49 QLKSKIRSLESHIDEKTQELKGKDE 73 (321)
Q Consensus 49 qlk~ki~~Les~i~e~~~eLk~kd~ 73 (321)
.+..++.+++..+..+.+.++..+.
T Consensus 10 ~l~~KvAElekkv~~lek~lk~~~e 34 (125)
T 2pms_C 10 APQAKIAELENQVHRLEQELKEIDE 34 (125)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTTTCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcch
Confidence 3455666666666665555555443
No 95
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=81.37 E-value=19 Score=28.78 Aligned_cols=33 Identities=12% Similarity=0.314 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 121 LEKQIDNLKKESEKQQKEKEALEARAIEAEKKI 153 (321)
Q Consensus 121 L~k~Ie~Lk~ele~~~~kk~~LEa~a~e~ekk~ 153 (321)
++..+..|+++++...-.+-.||.+...+...+
T Consensus 67 ~E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl 99 (119)
T 3ol1_A 67 AENTLQSFRQDVDNASLARLDLERKVESLQEEI 99 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555544455554444444433
No 96
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=81.29 E-value=4 Score=30.25 Aligned_cols=23 Identities=17% Similarity=0.122 Sum_probs=9.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHH
Q 020809 70 GKDEVVAQKEKAIQDKSERIVSL 92 (321)
Q Consensus 70 ~kd~~I~q~ek~i~e~~~~I~~L 92 (321)
.++..|++.+..|.++.++++.+
T Consensus 44 eLEk~L~ekd~eI~~LqseLDKf 66 (72)
T 3nmd_A 44 ELELELDQKDELIQMLQNELDKY 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333333333333444444433
No 97
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=80.67 E-value=16 Score=29.32 Aligned_cols=45 Identities=16% Similarity=0.211 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 105 LNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEA 149 (321)
Q Consensus 105 ~~~eeq~~~~~~RireL~k~Ie~Lk~ele~~~~kk~~LEa~a~e~ 149 (321)
...++-.+.++.|+..|+..++.+.+++...+.....+....+.+
T Consensus 84 ~~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~ 128 (133)
T 1fxk_C 84 KNFEDAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEEL 128 (133)
T ss_dssp EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666677777777777777777777777776666555554443
No 98
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=79.86 E-value=17 Score=27.41 Aligned_cols=49 Identities=16% Similarity=0.228 Sum_probs=24.2
Q ss_pred HHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 52 SKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQ 100 (321)
Q Consensus 52 ~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~q 100 (321)
.++..++..+...++-+-.+...|++++.+|..+..+|..+..+|+.++
T Consensus 6 ~rv~~LEr~~~~~~q~~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~ 54 (83)
T 2xdj_A 6 DRVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVV 54 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3444555444444344444455555555555555555555555555553
No 99
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=79.10 E-value=19 Score=27.45 Aligned_cols=23 Identities=9% Similarity=0.290 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 020809 114 AHARADELEKQIDNLKKESEKQQ 136 (321)
Q Consensus 114 ~~~RireL~k~Ie~Lk~ele~~~ 136 (321)
+++|+..++..|..|.+.+....
T Consensus 70 L~~~~e~i~~~i~~le~~~~~~~ 92 (107)
T 1fxk_A 70 LQEKLETLQLREKTIERQEERVM 92 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 100
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=79.09 E-value=18 Score=29.87 Aligned_cols=14 Identities=14% Similarity=0.145 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHH
Q 020809 44 KIELDQLKSKIRSL 57 (321)
Q Consensus 44 ~~el~qlk~ki~~L 57 (321)
+..+...+.++.++
T Consensus 14 r~~l~~~~~~~~~l 27 (135)
T 2e7s_A 14 LKTIASQKAAIENY 27 (135)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444443333
No 101
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=79.04 E-value=24 Score=28.52 Aligned_cols=58 Identities=16% Similarity=0.265 Sum_probs=35.9
Q ss_pred CCchHHHHHHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Q 020809 39 DSSPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDK---SERIVSLQKELSSL 99 (321)
Q Consensus 39 ~~~~l~~el~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~---~~~I~~Lq~eI~~~ 99 (321)
++.++.+.+++|......|...=+..-++.+.. .+.+.+.+.+. ..+|...-+.|...
T Consensus 3 ~a~~V~s~l~~LEaeyq~L~~kE~qrynqeka~---AE~A~~~L~~~~~m~~~i~ek~~~i~~~ 63 (119)
T 2avr_X 3 DAASLVGELQALDAEYQNLANQEEARFNEERAQ---ADAARQALAQNEQVYNELSQRAQRLQAE 63 (119)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566788899999999999988877765544443 33344444444 44444444444443
No 102
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=78.81 E-value=24 Score=28.41 Aligned_cols=20 Identities=15% Similarity=0.330 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 020809 117 RADELEKQIDNLKKESEKQQ 136 (321)
Q Consensus 117 RireL~k~Ie~Lk~ele~~~ 136 (321)
.|..|+..+.+..++++..+
T Consensus 79 EI~~Lnq~Lq~a~ae~erlr 98 (121)
T 3mq7_A 79 EITTLNHKLQDASAEVERLR 98 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 103
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=77.99 E-value=24 Score=28.06 Aligned_cols=28 Identities=29% Similarity=0.304 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 71 KDEVVAQKEKAIQDKSERIVSLQKELSS 98 (321)
Q Consensus 71 kd~~I~q~ek~i~e~~~~I~~Lq~eI~~ 98 (321)
+...+..++..+..+..+|+.|..+|..
T Consensus 29 L~~~L~~AEeaL~~Kq~~idelk~ei~q 56 (110)
T 2v4h_A 29 LRQQLQQAEEALVAKQELIDKLKEEAEQ 56 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444555555444444
No 104
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=77.75 E-value=16 Score=28.39 Aligned_cols=55 Identities=16% Similarity=0.272 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 71 KDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKES 132 (321)
Q Consensus 71 kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~qk~~~~~~eeq~~~~~~RireL~k~Ie~Lk~el 132 (321)
+...|.+.+..+.+...-|.++.-++..+.. .....++.|+|+-+..++.|+.++
T Consensus 47 rk~~i~~ie~~ldEA~eLl~qMelE~r~~p~-------s~R~~~~~klr~Yk~dL~~lk~el 101 (102)
T 2qyw_A 47 KKKLVRDFDEKQQEANETLAEMEEELRYAPL-------TFRNPMMSKLRNYRKDLAKLHREV 101 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSCH-------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH-------HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3444555555555555555555555444311 123477889999888888887764
No 105
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=77.67 E-value=36 Score=33.00 Aligned_cols=49 Identities=16% Similarity=0.270 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 117 RADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQK 165 (321)
Q Consensus 117 RireL~k~Ie~Lk~ele~~~~kk~~LEa~a~e~ekk~~el~~~le~Lek 165 (321)
+.+.+..+|..|+..+......+..|+......+.++..+..++..+..
T Consensus 85 ~skkml~~~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i~~l~~ 133 (409)
T 1m1j_C 85 KSKKIIEEIIRYENTILAHENTIQQLTDMHIMNSNKITQLKQKIAQLES 133 (409)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3334444444555555555555555555555666666666666666654
No 106
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=77.29 E-value=20 Score=26.81 Aligned_cols=53 Identities=15% Similarity=0.314 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 46 ELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSS 98 (321)
Q Consensus 46 el~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~ 98 (321)
.+++.+..+..|...-++++.--..++..|..++.+-.+++..|..|......
T Consensus 19 ~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~E 71 (78)
T 3iv1_A 19 EMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEE 71 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555566655555555555555555555555555555555544444333
No 107
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=77.15 E-value=20 Score=34.77 Aligned_cols=20 Identities=15% Similarity=0.287 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 020809 158 AKLEKLQKINDEQKSKIRKT 177 (321)
Q Consensus 158 ~~le~Lek~~~Eqk~~l~el 177 (321)
..+..|+.....+..+|+.+
T Consensus 105 ~~i~~l~~~~~~~~~~i~~l 124 (409)
T 1m1j_C 105 NTIQQLTDMHIMNSNKITQL 124 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHH
Confidence 33333333333333444433
No 108
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=77.11 E-value=12 Score=36.87 Aligned_cols=38 Identities=18% Similarity=0.093 Sum_probs=29.1
Q ss_pred HHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 64 KTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQK 101 (321)
Q Consensus 64 ~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~qk 101 (321)
...+|..+|..-.+++.+++++..+.+.+..+|....+
T Consensus 29 ~~~~~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~ 66 (455)
T 2dq0_A 29 WVDEILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRK 66 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34677778888888888888888888888888876543
No 109
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=76.90 E-value=22 Score=27.05 Aligned_cols=30 Identities=20% Similarity=0.353 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 107 AAEQVDKAHARADELEKQIDNLKKESEKQQ 136 (321)
Q Consensus 107 ~eeq~~~~~~RireL~k~Ie~Lk~ele~~~ 136 (321)
++++.+.+..++..|++.+..+..++.+.+
T Consensus 70 L~~~~e~i~~~i~~le~~~~~~~~~l~~lk 99 (107)
T 1fxk_A 70 LQEKLETLQLREKTIERQEERVMKKLQEMQ 99 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444443
No 110
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=76.87 E-value=11 Score=25.49 Aligned_cols=42 Identities=29% Similarity=0.342 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 020809 72 DEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQ 124 (321)
Q Consensus 72 d~~I~q~ek~i~e~~~~I~~Lq~eI~~~qk~~~~~~eeq~~~~~~RireL~k~ 124 (321)
++.++.++.-++.++-..+-|-.+.++.|. +++.||..|+..
T Consensus 4 Eekv~~Le~~ld~LqTr~ArLlae~~ssq~-----------KlKqRit~lE~~ 45 (46)
T 3swy_A 4 EEKVEQLGSSLDTLQTRFARLLAEYNATQM-----------KMKQRLSQLESQ 45 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHhc
Confidence 344444444444444444455555544443 555677666653
No 111
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=76.86 E-value=5.6 Score=37.58 Aligned_cols=45 Identities=11% Similarity=0.203 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHH
Q 020809 46 ELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIV 90 (321)
Q Consensus 46 el~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~ 90 (321)
....+..+|..++..+.....+|..+...|..++..|.+++.+|.
T Consensus 6 ~~~~~~~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~ 50 (323)
T 1lwu_C 6 TVQKILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLV 50 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555444444444444444443333333333333
No 112
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=76.54 E-value=28 Score=28.06 Aligned_cols=25 Identities=20% Similarity=0.239 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHH
Q 020809 85 KSERIVSLQKELSSLQKKETLNAAE 109 (321)
Q Consensus 85 ~~~~I~~Lq~eI~~~qk~~~~~~ee 109 (321)
+.+....|+.++..+.+.....+.+
T Consensus 7 i~~~l~~Leae~q~L~~~E~qry~~ 31 (119)
T 3etw_A 7 LVGELQALDAEYQNLANQEEARFNE 31 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666665543333333
No 113
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=76.51 E-value=34 Score=33.22 Aligned_cols=20 Identities=10% Similarity=0.044 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 020809 125 IDNLKKESEKQQKEKEALEA 144 (321)
Q Consensus 125 Ie~Lk~ele~~~~kk~~LEa 144 (321)
+..++..+..+...+..|+.
T Consensus 93 ~~~~~~~~~~~~~~i~~l~~ 112 (411)
T 3ghg_C 93 IMKYEASILTHDSSIRYLQE 112 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHH
Confidence 33334444444433333433
No 114
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=76.48 E-value=3.9 Score=41.47 Aligned_cols=40 Identities=18% Similarity=0.346 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 113 KAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKK 152 (321)
Q Consensus 113 ~~~~RireL~k~Ie~Lk~ele~~~~kk~~LEa~a~e~ekk 152 (321)
.+..+..+++.....|..+......++..|+.+..+++..
T Consensus 381 ~l~~~~~~~e~~~~~l~~~~~~~~~e~~~l~~~~~~~~~~ 420 (575)
T 2i1j_A 381 ELEQRQNELQAMMQRLEETKNMEAAERQKLEDEIRAKQEE 420 (575)
T ss_dssp ----------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3333444455555555555555554445555444444443
No 115
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=76.37 E-value=25 Score=27.41 Aligned_cols=11 Identities=45% Similarity=0.610 Sum_probs=4.5
Q ss_pred HHHHHHHHHHH
Q 020809 115 HARADELEKQI 125 (321)
Q Consensus 115 ~~RireL~k~I 125 (321)
.+|+....++|
T Consensus 61 ~aRlnsqQrQI 71 (114)
T 2xzr_A 61 SARLDSQQRQI 71 (114)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHhHHHHH
Confidence 33444444433
No 116
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=75.02 E-value=26 Score=26.96 Aligned_cols=69 Identities=16% Similarity=0.271 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 122 EKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMR 190 (321)
Q Consensus 122 ~k~Ie~Lk~ele~~~~kk~~LEa~a~e~ekk~~el~~~le~Lek~~~Eqk~~l~elE~~lq~~Eeei~k 190 (321)
...+..++.+-.....++..|+.....+...+..+......+...-..+|.....+...+-..+++...
T Consensus 10 ~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~S 78 (96)
T 3q8t_A 10 QRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKS 78 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444555555555555555555555555555444444444433
No 117
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=74.96 E-value=18 Score=27.20 Aligned_cols=31 Identities=26% Similarity=0.398 Sum_probs=20.7
Q ss_pred CchHHHHHHHHHHHHHHHHHhHHHHHHhhhc
Q 020809 40 SSPLKIELDQLKSKIRSLESHIDEKTQELKG 70 (321)
Q Consensus 40 ~~~l~~el~qlk~ki~~Les~i~e~~~eLk~ 70 (321)
+-..+.+++.+..+|..|+..+..+..++..
T Consensus 17 SykeqrEle~le~~Ie~LE~~i~~le~~lad 47 (89)
T 2lw1_A 17 SYKLQRELEQLPQLLEDLEAKLEALQTQVAD 47 (89)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3345666777777777777777777666643
No 118
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=74.32 E-value=26 Score=26.46 Aligned_cols=6 Identities=33% Similarity=0.363 Sum_probs=2.1
Q ss_pred HHHHHH
Q 020809 131 ESEKQQ 136 (321)
Q Consensus 131 ele~~~ 136 (321)
++++.+
T Consensus 28 EieELK 33 (81)
T 2jee_A 28 EIEELK 33 (81)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 119
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=74.02 E-value=23 Score=26.02 Aligned_cols=41 Identities=24% Similarity=0.259 Sum_probs=29.1
Q ss_pred hHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 60 HIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQ 100 (321)
Q Consensus 60 ~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~q 100 (321)
.+..+..+|.++|.+|..++..+.-+.+....|..+|=++.
T Consensus 19 ~l~~Lr~eL~~Ke~eI~~L~e~i~lk~kd~ErLNDEiislN 59 (75)
T 3a7o_A 19 TLAILQKELKSKEQEIRRLKEVIALKNKNTERLNDELISGT 59 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHhhHHHHHhH
Confidence 44445556666777777777777777777777887777763
No 120
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=73.88 E-value=5.5 Score=38.55 Aligned_cols=22 Identities=36% Similarity=0.552 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHH
Q 020809 43 LKIELDQLKSKIRSLESHIDEK 64 (321)
Q Consensus 43 l~~el~qlk~ki~~Les~i~e~ 64 (321)
+..++..++.+..+++..+..+
T Consensus 8 ~~~~~~~l~~~~~~l~~~~~~~ 29 (403)
T 4etp_A 8 LKEKIAALKEKIAALKEKIKDT 29 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 121
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=73.60 E-value=5.8 Score=26.29 Aligned_cols=26 Identities=19% Similarity=0.268 Sum_probs=11.8
Q ss_pred HHHHhhhcHHHHHHHHHHHHHHHHHH
Q 020809 63 EKTQELKGKDEVVAQKEKAIQDKSER 88 (321)
Q Consensus 63 e~~~eLk~kd~~I~q~ek~i~e~~~~ 88 (321)
++-+.|+..|.+|+..+..|++++..
T Consensus 6 ~l~qkI~kVdrEI~Kte~kI~~lqkK 31 (42)
T 2l5g_B 6 ELIQNMDRVDREITMVEQQISKLKKK 31 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555554444443333
No 122
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=73.00 E-value=26 Score=25.97 Aligned_cols=46 Identities=24% Similarity=0.323 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 71 KDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDN 127 (321)
Q Consensus 71 kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~qk~~~~~~eeq~~~~~~RireL~k~Ie~ 127 (321)
+++.+..++..+..++-..+.|..+..+.|. +++.||..|+..+..
T Consensus 5 lEEKv~~LE~sld~LQTrfARLLaEy~ssQ~-----------KLKqRit~LE~~~~~ 50 (74)
T 3swf_A 5 LEEKVTRMESSVDLLQTRFARILAEYESMQQ-----------KLKQRLTKVEKFLKP 50 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHhcc
Confidence 4455555555555555555555555555543 555577766666544
No 123
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=72.94 E-value=6.9 Score=35.27 Aligned_cols=30 Identities=30% Similarity=0.403 Sum_probs=13.2
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHhhhcH
Q 020809 42 PLKIELDQLKSKIRSLESHIDEKTQELKGK 71 (321)
Q Consensus 42 ~l~~el~qlk~ki~~Les~i~e~~~eLk~k 71 (321)
++++.+++++.+|+.|+..++++++....+
T Consensus 3 ~lnsRvd~~EErIs~le~rleei~q~eq~~ 32 (233)
T 2yko_A 3 SLRSRCDQLEERVSAAEDEINEIKREGKFR 32 (233)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555554433333
No 124
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=72.22 E-value=8.8 Score=33.47 Aligned_cols=48 Identities=17% Similarity=0.189 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHH
Q 020809 43 LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIV 90 (321)
Q Consensus 43 l~~el~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~ 90 (321)
++.+|+....-|+.|..+...+++++..++.+|..++.++..+..++.
T Consensus 11 ~q~ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~ 58 (190)
T 4emc_A 11 VKQQIDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVK 58 (190)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 455666666667777777777766666666666665555555444443
No 125
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=72.12 E-value=27 Score=34.70 Aligned_cols=37 Identities=16% Similarity=0.224 Sum_probs=28.6
Q ss_pred HHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 65 TQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQK 101 (321)
Q Consensus 65 ~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~qk 101 (321)
..+|..+|..-.+++.+++++..+.+.+..+|..+.+
T Consensus 32 ~~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~k~ 68 (485)
T 3qne_A 32 VDEIIAEYKEWVKLRFDLDEHNKKLNSVQKEIGKRFK 68 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5667777888888888888888888888888876644
No 126
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=72.05 E-value=31 Score=26.76 Aligned_cols=28 Identities=11% Similarity=0.234 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 109 EQVDKAHARADELEKQIDNLKKESEKQQ 136 (321)
Q Consensus 109 eq~~~~~~RireL~k~Ie~Lk~ele~~~ 136 (321)
.+...+..+|.+|++.|++-....+.+.
T Consensus 15 qRkkkL~~Ki~el~~ei~ke~~~regl~ 42 (98)
T 2ke4_A 15 QQRKRLQQQLEERSRELQKEVDQREALK 42 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555544444
No 127
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=71.80 E-value=25 Score=34.95 Aligned_cols=63 Identities=10% Similarity=0.078 Sum_probs=39.7
Q ss_pred CCchHHHHHHHHHHHHHHHHHhH-HHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 39 DSSPLKIELDQLKSKIRSLESHI-DEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQK 101 (321)
Q Consensus 39 ~~~~l~~el~qlk~ki~~Les~i-~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~qk 101 (321)
|..-++.+.+..+..+..-.... .....++..+|..-.+++.+++++..+.+.+..+|....+
T Consensus 42 D~~~ir~n~~~v~~~l~~R~~~~~~~~~~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~~~ 105 (501)
T 1wle_A 42 DMESLCAYPEDAARALDLRKGELRSKDLPGIISTWQELRQLREQIRSLEEEKEAVTEAVRALVV 105 (501)
T ss_dssp CHHHHHHSHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHhCHHHHHHHHHHcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 55566666666555554433211 0124567777888888888888888888888877776543
No 128
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=70.89 E-value=33 Score=26.25 Aligned_cols=22 Identities=14% Similarity=0.413 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 020809 125 IDNLKKESEKQQKEKEALEARA 146 (321)
Q Consensus 125 Ie~Lk~ele~~~~kk~~LEa~a 146 (321)
|..|+.+++....++..++...
T Consensus 58 i~~Lr~~i~~~~~ek~~l~~e~ 79 (93)
T 3s4r_A 58 MRELRRQVDQLTNDKARVEVER 79 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444443333343333
No 129
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=70.88 E-value=16 Score=30.11 Aligned_cols=46 Identities=15% Similarity=0.187 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 105 LNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAE 150 (321)
Q Consensus 105 ~~~eeq~~~~~~RireL~k~Ie~Lk~ele~~~~kk~~LEa~a~e~e 150 (321)
...++-.+.++.|+..|+..++.+..++...+.....++...+.+.
T Consensus 94 ~~~~eA~~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l~ 139 (151)
T 2zdi_C 94 RSIDEAISFLEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQEVQ 139 (151)
T ss_dssp EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466777778888888888888888877777766665555544443
No 130
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=70.43 E-value=40 Score=27.10 Aligned_cols=23 Identities=17% Similarity=0.281 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 020809 114 AHARADELEKQIDNLKKESEKQQ 136 (321)
Q Consensus 114 ~~~RireL~k~Ie~Lk~ele~~~ 136 (321)
....|..|+..|..|+.+++..+
T Consensus 38 ~q~~v~ql~~~i~~Le~eL~e~r 60 (120)
T 3i00_A 38 SQRVVLQLKGHVSELEADLAEQQ 60 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444433
No 131
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=69.96 E-value=45 Score=27.47 Aligned_cols=61 Identities=20% Similarity=0.272 Sum_probs=41.0
Q ss_pred chHHHHHHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 41 SPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQK 101 (321)
Q Consensus 41 ~~l~~el~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~qk 101 (321)
+.+++.++.++..+.+.+..++-+-+=|.+-..+.+++++.-.--+++|..|..+...+|.
T Consensus 14 a~L~~D~~s~~~eleEnqeEL~iVgkML~EEqgKVDQlqKRn~~HQKEi~~Lrae~~~~QR 74 (167)
T 4gkw_A 14 ADLKQDTESLQKQLEENQEELEIVGNMLREEQGKVDQLQKRNVAHQKEIGKLRAELGTAQR 74 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666666666666666777777777766666777777666666654
No 132
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=69.61 E-value=3.4 Score=28.70 Aligned_cols=31 Identities=19% Similarity=0.329 Sum_probs=24.5
Q ss_pred CCchHHHHHHHHHHHHHHHHHhHHHHHHhhh
Q 020809 39 DSSPLKIELDQLKSKIRSLESHIDEKTQELK 69 (321)
Q Consensus 39 ~~~~l~~el~qlk~ki~~Les~i~e~~~eLk 69 (321)
|.++++.++++++.++..|..+.+++..++.
T Consensus 20 d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6677888888888888888888888776664
No 133
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=68.30 E-value=35 Score=25.53 Aligned_cols=58 Identities=16% Similarity=0.245 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 121 LEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTE 178 (321)
Q Consensus 121 L~k~Ie~Lk~ele~~~~kk~~LEa~a~e~ekk~~el~~~le~Lek~~~Eqk~~l~elE 178 (321)
|+..+...+++++.++....+|..=...++..+..+......+++...-++.+..+++
T Consensus 16 l~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~ 73 (78)
T 3iv1_A 16 MKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEELS 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334555555666555555555555555555555555555555554444444444443
No 134
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=68.03 E-value=50 Score=27.24 Aligned_cols=7 Identities=14% Similarity=0.112 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 020809 86 SERIVSL 92 (321)
Q Consensus 86 ~~~I~~L 92 (321)
...+..|
T Consensus 56 ~~~~~~L 62 (155)
T 2oto_A 56 EKAKQAL 62 (155)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 135
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=66.75 E-value=14 Score=34.91 Aligned_cols=19 Identities=16% Similarity=0.085 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 020809 78 KEKAIQDKSERIVSLQKEL 96 (321)
Q Consensus 78 ~ek~i~e~~~~I~~Lq~eI 96 (321)
++..|...+.+|..|++.+
T Consensus 17 ~e~~i~~~~~~i~~L~~~l 35 (323)
T 1lwu_C 17 LEQIGVSHDAQIQELSEMW 35 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcHHHHHHHHHHHH
Confidence 3333333333333333333
No 136
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=66.70 E-value=43 Score=25.93 Aligned_cols=33 Identities=18% Similarity=0.317 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHH
Q 020809 47 LDQLKSKIRSLESHIDEKTQELKGKDEVVAQKE 79 (321)
Q Consensus 47 l~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~e 79 (321)
++.+..++...+.-+......|+.+.+.|.+..
T Consensus 4 ~~~L~~~L~~aEeaL~~kq~~id~lke~~~q~~ 36 (94)
T 3jsv_C 4 LEDLRQQLQQAEEALVAKQELIDKLKEEAEQHK 36 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 344444444444444443333333344443333
No 137
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=66.60 E-value=70 Score=28.83 Aligned_cols=69 Identities=19% Similarity=0.209 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 125 IDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKF 193 (321)
Q Consensus 125 Ie~Lk~ele~~~~kk~~LEa~a~e~ekk~~el~~~le~Lek~~~Eqk~~l~elE~~lq~~Eeei~kl~~ 193 (321)
+..|+.+.+.+..++.-|+-+.+-+...+.++-.+++.|.....-.-.+|..+|+..-.++..+..+.-
T Consensus 151 l~~Lkk~~~~i~~~LelL~IRK~ma~sEI~EID~KI~~L~~mR~~vl~RLA~lEqdEl~LE~eL~~V~~ 219 (242)
T 3uux_B 151 PSALKSFSQTLVNSLEFLNIQKNSTLSEIRDIEVEVENLRQKKEKLLGKIANIEQNQLLLEDNLKQIDD 219 (242)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 788888888999889999999999999999999999999999998888898888888888887766543
No 138
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=66.32 E-value=15 Score=37.16 Aligned_cols=22 Identities=27% Similarity=0.410 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 020809 78 KEKAIQDKSERIVSLQKELSSL 99 (321)
Q Consensus 78 ~ek~i~e~~~~I~~Lq~eI~~~ 99 (321)
++....+++..+..++.+....
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~ 354 (575)
T 2i1j_A 333 AEKKQQEYQDRLRQMQEEMERS 354 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555444
No 139
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=65.69 E-value=18 Score=30.24 Aligned_cols=47 Identities=19% Similarity=0.259 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 118 ADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQ 164 (321)
Q Consensus 118 ireL~k~Ie~Lk~ele~~~~kk~~LEa~a~e~ekk~~el~~~le~Le 164 (321)
...|+..+..+..+++..+..+..+++....+...+.+++.....++
T Consensus 61 ~~~le~~~~~l~rdleasr~akk~~ea~la~l~~~~~~LeAE~aKLe 107 (146)
T 2xnx_M 61 ANVLEKELEAITREQEINRNLLGNAKLELDQLSSEKEQLTIEKAKLE 107 (146)
T ss_dssp HHHHTTTTTTHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred hhhhHhhHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHH
Confidence 34455555666666666666666666655555555555554444443
No 140
>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A
Probab=65.40 E-value=52 Score=29.07 Aligned_cols=66 Identities=18% Similarity=0.274 Sum_probs=37.2
Q ss_pred HHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 020809 54 IRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADE 120 (321)
Q Consensus 54 i~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~qk~~~~~~eeq~~~~~~Rire 120 (321)
+..-|..|....-++..-+..|...+..|..++-.|...+++|..++- .-.+++-++.....||.+
T Consensus 79 L~dHe~rI~a~~a~l~dHE~RIt~~~~~ia~~e~Rit~~e~~i~~l~~-~v~~ld~~vt~~et~Isa 144 (242)
T 3c9i_A 79 LADHEARIKQLRIDVDDHESRITANTKAITALNVRVTTAEGEIASLQT-NVSALDGRVTTAENNISA 144 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred eecchhhhhhhhcccccHHHHhhhhhhhhhhhhheeecccccchhhhh-hhhhhcccccccccchhh
Confidence 344555666655555555666666666666666666666666655543 334455555555555555
No 141
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=65.22 E-value=40 Score=25.09 Aligned_cols=45 Identities=27% Similarity=0.194 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 105 LNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEA 149 (321)
Q Consensus 105 ~~~eeq~~~~~~RireL~k~Ie~Lk~ele~~~~kk~~LEa~a~e~ 149 (321)
..++--.+.+-+|+.+|..+-+.|+.+++....-+..++.+..++
T Consensus 26 NaLnvvk~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~el 70 (77)
T 2w83_C 26 NALNIVKNDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNREL 70 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444555555554445444444444444444443333
No 142
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=65.10 E-value=17 Score=35.06 Aligned_cols=17 Identities=35% Similarity=0.436 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHhHHHH
Q 020809 48 DQLKSKIRSLESHIDEK 64 (321)
Q Consensus 48 ~qlk~ki~~Les~i~e~ 64 (321)
++++.++..++.+..++
T Consensus 6 ~~~~~~~~~l~~~~~~l 22 (403)
T 4etp_A 6 AALKEKIAALKEKIAAL 22 (403)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 143
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=64.65 E-value=47 Score=27.03 Aligned_cols=12 Identities=25% Similarity=0.636 Sum_probs=4.3
Q ss_pred HHHHHHHHHHHH
Q 020809 47 LDQLKSKIRSLE 58 (321)
Q Consensus 47 l~qlk~ki~~Le 58 (321)
+.++..++..++
T Consensus 15 vAElekkv~~le 26 (125)
T 2pms_C 15 IAELENQVHRLE 26 (125)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 144
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=63.21 E-value=42 Score=26.39 Aligned_cols=53 Identities=19% Similarity=0.235 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 48 DQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQ 100 (321)
Q Consensus 48 ~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~q 100 (321)
.||....+.+-.+++-+...|.+.++.+.+.+.+..++..++..+.-.++.++
T Consensus 19 AQLDNEKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~ 71 (103)
T 4h22_A 19 AQLDNEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQ 71 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556667777777777777777788888888777777777666666555553
No 145
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=62.72 E-value=30 Score=22.81 Aligned_cols=30 Identities=37% Similarity=0.447 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 140 EALEARAIEAEKKISDLSAKLEKLQKINDE 169 (321)
Q Consensus 140 ~~LEa~a~e~ekk~~el~~~le~Lek~~~E 169 (321)
.+||.+.++++.+.++++.++..|+....-
T Consensus 6 ~eLE~r~k~le~~naeLEervstLq~EN~m 35 (42)
T 2oqq_A 6 SELENRVKDLENKNSELEERLSTLQNENQM 35 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 456666666666666666666666554443
No 146
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=61.78 E-value=22 Score=34.38 Aligned_cols=34 Identities=18% Similarity=0.204 Sum_probs=23.3
Q ss_pred HHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 65 TQELKGKDEVVAQKEKAIQDKSERIVSLQKELSS 98 (321)
Q Consensus 65 ~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~ 98 (321)
..++..+|..-.+++.+++.+..+.+.+..+|..
T Consensus 27 ~~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~ 60 (421)
T 1ses_A 27 LEALLALDREVQELKKRLQEVQTERNQVAKRVPK 60 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566667777777777777777777777766654
No 147
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=61.39 E-value=98 Score=30.47 Aligned_cols=7 Identities=14% Similarity=0.117 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 020809 72 DEVVAQK 78 (321)
Q Consensus 72 d~~I~q~ 78 (321)
+..++++
T Consensus 101 e~~l~~i 107 (461)
T 3ghg_B 101 NNNVEAV 107 (461)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 148
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=61.36 E-value=49 Score=24.77 Aligned_cols=21 Identities=19% Similarity=0.362 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 020809 76 AQKEKAIQDKSERIVSLQKEL 96 (321)
Q Consensus 76 ~q~ek~i~e~~~~I~~Lq~eI 96 (321)
+.++..|..++.+|..|+..+
T Consensus 25 e~le~~Ie~LE~~i~~le~~l 45 (89)
T 2lw1_A 25 EQLPQLLEDLEAKLEALQTQV 45 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344444444444
No 149
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=61.32 E-value=52 Score=25.11 Aligned_cols=58 Identities=12% Similarity=0.213 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q 020809 71 KDEVVAQKEKAIQDKSERIVSLQKELSSL--QKKETLNAAEQVDKAHARADELEKQIDN-LKKESEKQ 135 (321)
Q Consensus 71 kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~--qk~~~~~~eeq~~~~~~RireL~k~Ie~-Lk~ele~~ 135 (321)
+...|.+.+..+.+...-|.++.-++..+ -. .....++.|+|.-+..+.. |+.++...
T Consensus 32 Rk~~i~~ie~~ldEA~ell~qMelE~~~~~~p~-------~~R~~~~~klr~Yk~dl~~~lk~~lk~l 92 (97)
T 3onj_A 32 RNTTLKHVEQQQDELFDLLDQMDVEVNNSIGDA-------SERATYKAKLREWKKTIQSDIKRPLQSL 92 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH-------HHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444444445555555555444 11 1134677788888888888 88777654
No 150
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=60.38 E-value=31 Score=26.66 Aligned_cols=61 Identities=15% Similarity=0.300 Sum_probs=39.7
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 69 KGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQ 136 (321)
Q Consensus 69 k~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~qk~~~~~~eeq~~~~~~RireL~k~Ie~Lk~ele~~~ 136 (321)
.++...|.+.+..+.+...-|.++.-++..+-. .....++.|+|.-+..++.|+.++....
T Consensus 34 eerk~~i~~ie~~l~EA~ell~qMelE~r~~p~-------~~R~~~~~klr~Yk~dL~~lk~elk~~~ 94 (102)
T 1vcs_A 34 DEKKQMVANVEKQLEEARELLEQMDLEVREIPP-------QSRGMYSNRMRSYKQEMGKLETDFKRSR 94 (102)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCT-------TTHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH-------HhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666666666666666554421 1234778899998888888888776543
No 151
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=60.29 E-value=56 Score=25.10 Aligned_cols=46 Identities=35% Similarity=0.392 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 117 RADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEK 162 (321)
Q Consensus 117 RireL~k~Ie~Lk~ele~~~~kk~~LEa~a~e~ekk~~el~~~le~ 162 (321)
|+++|+..|+..-+-++.-+--+-+||+|....++-..-+.-++..
T Consensus 47 ~i~el~akidd~Lk~l~~EklAkldLE~RLsKtEKDkAiLELkLaE 92 (101)
T 1d7m_A 47 RLRELEAKLDETLKNLELEKLARMELEARLAKTEKDRAILELKLAE 92 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 4444443333333333333333334444444444443434333333
No 152
>2qih_A Protein USPA1; trimeric, parallel alpha-helical coiled-coil, cell adhesion; 1.90A {Moraxella catarrhalis}
Probab=60.22 E-value=73 Score=26.39 Aligned_cols=29 Identities=17% Similarity=0.334 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 156 LSAKLEKLQKINDEQKSKIRKTERALKVA 184 (321)
Q Consensus 156 l~~~le~Lek~~~Eqk~~l~elE~~lq~~ 184 (321)
-.+-+..|.+...+--..|++...+.+..
T Consensus 115 HSSDIKTLkKnS~~NTdnI~knka~~~a~ 143 (157)
T 2qih_A 115 HSSDIKTLAKVSAANTDRIAKNKAEADAS 143 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhcchhccchhhhhhHHHHhH
Confidence 34444444444444444444444444333
No 153
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=59.96 E-value=74 Score=27.14 Aligned_cols=18 Identities=17% Similarity=0.451 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 020809 118 ADELEKQIDNLKKESEKQ 135 (321)
Q Consensus 118 ireL~k~Ie~Lk~ele~~ 135 (321)
|+.|.++|.+|+.++...
T Consensus 115 I~aL~~Ei~~Lr~qL~~~ 132 (175)
T 3lay_A 115 INAVAKEMESLGQKLDEQ 132 (175)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333334444333333
No 154
>2yo3_A General control protein GCN4, putative inner MEMB protein, general control protein...; HANS motif, YADA-like head, ylhead; 2.00A {Saccharomyces cerevisiae}
Probab=59.75 E-value=46 Score=30.49 Aligned_cols=44 Identities=18% Similarity=0.410 Sum_probs=37.5
Q ss_pred HHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 57 LESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQ 100 (321)
Q Consensus 57 Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~q 100 (321)
..++...+..+|...+..+.+.++.++++-..|.+|+.+|....
T Consensus 214 Td~k~~~l~n~I~~V~n~~~q~~~~~~~~~~~~~~~~~~~~~~~ 257 (268)
T 2yo3_A 214 TDQKMGEMNSKIKGVENKMKQIEDKIEEILSKIYHIENEIARIK 257 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577788888888899999999999999999999999998774
No 155
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=59.72 E-value=62 Score=25.48 Aligned_cols=16 Identities=25% Similarity=0.439 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHhHH
Q 020809 47 LDQLKSKIRSLESHID 62 (321)
Q Consensus 47 l~qlk~ki~~Les~i~ 62 (321)
|.+++..+...|+++.
T Consensus 37 ieeLQ~Ei~~~E~QL~ 52 (107)
T 2k48_A 37 LQELQENITAHEQQLV 52 (107)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444443333333
No 156
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=58.54 E-value=60 Score=24.92 Aligned_cols=55 Identities=15% Similarity=0.213 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 45 IELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSL 99 (321)
Q Consensus 45 ~el~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~ 99 (321)
+.+.-+++-+..-.-..+++-++.+++..-++.++.+-......|..+++.|+..
T Consensus 4 n~La~le~sLe~EK~S~eeL~kQk~eL~~~l~~l~~e~~~R~~~i~el~akidd~ 58 (101)
T 1d7m_A 4 NRLAGLENSLESEKVSREQLIKQKDQLNSLLASLESEGAEREKRLRELEAKLDET 58 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444433333334555555666666666666666666666666666666665
No 157
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=57.78 E-value=57 Score=24.40 Aligned_cols=18 Identities=33% Similarity=0.564 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 020809 117 RADELEKQIDNLKKESEK 134 (321)
Q Consensus 117 RireL~k~Ie~Lk~ele~ 134 (321)
|-.+|+..|..++.+++.
T Consensus 21 rN~~Le~~v~~le~~Le~ 38 (79)
T 3cvf_A 21 RNAELEHQLRAMERSLEE 38 (79)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 158
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=57.77 E-value=50 Score=23.79 Aligned_cols=38 Identities=13% Similarity=0.282 Sum_probs=16.5
Q ss_pred HHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 62 DEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSL 99 (321)
Q Consensus 62 ~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~ 99 (321)
+++......-...+.....+|.++...|..|+.+|+++
T Consensus 38 eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~sl 75 (77)
T 3trt_A 38 ADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDAL 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33333333334444444444444444444444444443
No 159
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=56.85 E-value=44 Score=22.86 Aligned_cols=44 Identities=18% Similarity=0.335 Sum_probs=18.2
Q ss_pred HHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 54 IRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELS 97 (321)
Q Consensus 54 i~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~ 97 (321)
+..++....+.+..+..+...+......+......+......|.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~ 50 (60)
T 3htk_A 7 KKTLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVI 50 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444433333
No 160
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=56.18 E-value=74 Score=25.20 Aligned_cols=40 Identities=10% Similarity=0.131 Sum_probs=22.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 103 ETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEAL 142 (321)
Q Consensus 103 ~~~~~eeq~~~~~~RireL~k~Ie~Lk~ele~~~~kk~~L 142 (321)
...-++++.+.+..++..|++.+..+++.+......+.++
T Consensus 89 A~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~ 128 (133)
T 1fxk_C 89 AMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEEL 128 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555566666666666665555555444333
No 161
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=55.53 E-value=72 Score=24.86 Aligned_cols=36 Identities=22% Similarity=0.359 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHH
Q 020809 47 LDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAI 82 (321)
Q Consensus 47 l~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i 82 (321)
+++.-+.+-.++..++-+..-+-..|..+...-+-|
T Consensus 8 ~~~~~~~~~~~~~~~~ri~~aig~~d~ri~~NtqaI 43 (114)
T 2xzr_A 8 IEEILSKIYHIENEIARIKKLIGAIDGRVTRNTQSI 43 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcchHHHHHHHHhhhhHHHHhhHHHH
Confidence 333333333344444433333333333333333333
No 162
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=55.39 E-value=74 Score=24.98 Aligned_cols=21 Identities=19% Similarity=0.161 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 020809 117 RADELEKQIDNLKKESEKQQK 137 (321)
Q Consensus 117 RireL~k~Ie~Lk~ele~~~~ 137 (321)
..++..+.++.++........
T Consensus 52 e~~eK~re~e~~Kr~~~~L~~ 72 (103)
T 4h22_A 52 QYEEKNKEFEREKHAHSILQF 72 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 163
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=55.33 E-value=22 Score=32.00 Aligned_cols=16 Identities=13% Similarity=0.165 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 020809 117 RADELEKQIDNLKKES 132 (321)
Q Consensus 117 RireL~k~Ie~Lk~el 132 (321)
|++.++..+.+|+..+
T Consensus 35 rik~ne~sL~dL~d~i 50 (233)
T 2yko_A 35 RIKRNEQSLQEIWDYV 50 (233)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh
Confidence 3333333344444433
No 164
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=55.09 E-value=81 Score=25.36 Aligned_cols=59 Identities=17% Similarity=0.253 Sum_probs=32.1
Q ss_pred CCchHHHHHHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 39 DSSPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQ 100 (321)
Q Consensus 39 ~~~~l~~el~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~q 100 (321)
++.++.+.+++|..+...|...=+..- .......+.++..+.........+...|..++
T Consensus 3 ~a~~i~~~l~~Leae~q~L~~~E~qry---~~eka~AE~A~~~La~~~~l~~~i~er~~~i~ 61 (119)
T 3etw_A 3 DAASLVGELQALDAEYQNLANQEEARF---NEERAQADAARQALAQNEQVYNELSQRAQRLQ 61 (119)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556778888888888887776655443 33333333344444444444444444444443
No 165
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Probab=54.70 E-value=1.7e+02 Score=29.05 Aligned_cols=30 Identities=10% Similarity=0.221 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q 020809 151 KKISDLSAKLEKLQKIND-EQKSKIRKTERA 180 (321)
Q Consensus 151 kk~~el~~~le~Lek~~~-Eqk~~l~elE~~ 180 (321)
+.++++....+.|.+..+ |+...+++.-++
T Consensus 189 ~mi~~yr~k~~aL~~aIe~Er~~~~EEAIqe 219 (526)
T 3iyk_A 189 VMVKEYRDKIDALKNAIEVERDGMQEEAIQE 219 (526)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 355556666666655432 344444443333
No 166
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=53.16 E-value=1.2e+02 Score=30.01 Aligned_cols=28 Identities=11% Similarity=0.022 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 164 QKINDEQKSKIRKTERALKVAEEEMMRA 191 (321)
Q Consensus 164 ek~~~Eqk~~l~elE~~lq~~Eeei~kl 191 (321)
.....+.+.+|..++..+..+++++..+
T Consensus 122 ~~~~~~l~~~i~~l~~~~~~~~~~l~~~ 149 (501)
T 1wle_A 122 RARGREIRKQLTLLYPKEAQLEEQFYLR 149 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555555555555555555543
No 167
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=52.73 E-value=48 Score=25.90 Aligned_cols=32 Identities=19% Similarity=0.060 Sum_probs=18.0
Q ss_pred hhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 67 ELKGKDEVVAQKEKAIQDKSERIVSLQKELSS 98 (321)
Q Consensus 67 eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~ 98 (321)
++..+..+|+.++.+-..+...+..|+.+|..
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555666666655544
No 168
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=52.52 E-value=93 Score=25.31 Aligned_cols=39 Identities=18% Similarity=0.211 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHhhhcH---HHHHHHHHHHH
Q 020809 44 KIELDQLKSKIRSLESHIDEKTQELKGK---DEVVAQKEKAI 82 (321)
Q Consensus 44 ~~el~qlk~ki~~Les~i~e~~~eLk~k---d~~I~q~ek~i 82 (321)
+.++.++...+..++..+..+.+.+..+ ...+.+....+
T Consensus 8 ~~~l~ql~~~~qql~~~~~~l~~~~~~L~~a~~~~~e~~~~l 49 (151)
T 2zdi_C 8 NKELEKLAYEYQVLQAQAQILAQNLELLNLAKAEVQTVRETL 49 (151)
T ss_dssp TTHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666555555555555 44444444433
No 169
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=52.40 E-value=90 Score=25.07 Aligned_cols=8 Identities=50% Similarity=0.679 Sum_probs=3.5
Q ss_pred HHHHHHHH
Q 020809 92 LQKELSSL 99 (321)
Q Consensus 92 Lq~eI~~~ 99 (321)
|+.++...
T Consensus 30 Lq~qLTqA 37 (121)
T 3mq7_A 30 LQQELTEA 37 (121)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444444
No 170
>3m0d_C TNF receptor-associated factor 1; trimeric helix coiled coiled, acetylation, alternative splic apoptosis, coiled coil, cytoplasm; 2.80A {Homo sapiens}
Probab=52.24 E-value=60 Score=23.01 Aligned_cols=32 Identities=22% Similarity=0.366 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHH
Q 020809 47 LDQLKSKIRSLESHIDEKTQELKGKDEVVAQK 78 (321)
Q Consensus 47 l~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ 78 (321)
|.+++.++..++..+...+.++......+...
T Consensus 8 ~~~le~kl~~lEnIv~~l~~eve~~~~~lea~ 39 (65)
T 3m0d_C 8 LAELEGKLRVFENIVAVLNKEVEASHLALATS 39 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 34455555555555555444444444444444
No 171
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=52.07 E-value=29 Score=22.94 Aligned_cols=20 Identities=20% Similarity=0.431 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 020809 82 IQDKSERIVSLQKELSSLQK 101 (321)
Q Consensus 82 i~e~~~~I~~Lq~eI~~~qk 101 (321)
|.....+|+....+|+.+|+
T Consensus 11 I~kVdrEI~Kte~kI~~lqk 30 (42)
T 2l5g_B 11 MDRVDREITMVEQQISKLKK 30 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444433
No 172
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=51.53 E-value=75 Score=23.88 Aligned_cols=27 Identities=30% Similarity=0.434 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 109 EQVDKAHARADELEKQIDNLKKESEKQ 135 (321)
Q Consensus 109 eq~~~~~~RireL~k~Ie~Lk~ele~~ 135 (321)
.+...+.+|.++|..+|+.++.+++..
T Consensus 45 skL~eae~rn~eL~~e~~~l~~~~eel 71 (81)
T 1wt6_A 45 SQLREAEARNRDLEAHVRQLQERMELL 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445556666666666666666553
No 173
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=50.71 E-value=1e+02 Score=30.47 Aligned_cols=37 Identities=11% Similarity=0.074 Sum_probs=26.5
Q ss_pred HHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 65 TQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQK 101 (321)
Q Consensus 65 ~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~qk 101 (321)
..+|..+|.+-.+++.+++++..+.+.+..+|-...+
T Consensus 36 ~d~~~~ld~~~r~~~~~~~~l~~~rN~~sk~i~~~~~ 72 (484)
T 3lss_A 36 VDAIIEADKKWRRTQFLTEASKKLINICSKAVGAKKK 72 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4666777777777777777777777777777766533
No 174
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=50.18 E-value=35 Score=21.31 Aligned_cols=24 Identities=21% Similarity=0.311 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 76 AQKEKAIQDKSERIVSLQKELSSL 99 (321)
Q Consensus 76 ~q~ek~i~e~~~~I~~Lq~eI~~~ 99 (321)
+|++..++++-..+..|++++..+
T Consensus 3 nQLEdKVEell~~~~~le~EV~Rl 26 (33)
T 2wq1_A 3 KQLEDKIEENTSKIYHNTNEIARN 26 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHH
Confidence 344444444444444555555444
No 175
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=50.06 E-value=15 Score=35.64 Aligned_cols=35 Identities=17% Similarity=0.154 Sum_probs=26.3
Q ss_pred HHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 65 TQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSL 99 (321)
Q Consensus 65 ~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~ 99 (321)
..++..+|..-.+++.+++++..+.+.+..+|..+
T Consensus 29 ~~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~ 63 (425)
T 2dq3_A 29 VDKVLELDKRRREIIKRLEALRSERNKLSKEIGKL 63 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777777778877777777777777777655
No 176
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=49.57 E-value=88 Score=24.14 Aligned_cols=19 Identities=5% Similarity=0.235 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHhHHH
Q 020809 45 IELDQLKSKIRSLESHIDE 63 (321)
Q Consensus 45 ~el~qlk~ki~~Les~i~e 63 (321)
+....++.+|..|+..|..
T Consensus 15 qRkkkL~~Ki~el~~ei~k 33 (98)
T 2ke4_A 15 QQRKRLQQQLEERSRELQK 33 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444443
No 177
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=49.50 E-value=75 Score=23.32 Aligned_cols=27 Identities=26% Similarity=0.490 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 110 QVDKAHARADELEKQIDNLKKESEKQQ 136 (321)
Q Consensus 110 q~~~~~~RireL~k~Ie~Lk~ele~~~ 136 (321)
+...+..|-.+|+..|..++.+++.-+
T Consensus 8 kLq~~E~~N~~Le~~v~~le~~Le~s~ 34 (72)
T 3cve_A 8 KLQEVEIRNKDLEGQLSEMEQRLEKSQ 34 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555555544
No 178
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=49.16 E-value=92 Score=24.27 Aligned_cols=33 Identities=21% Similarity=0.270 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHhhhcHHHHHH
Q 020809 44 KIELDQLKSKIRSLESHIDEKTQELKGKDEVVA 76 (321)
Q Consensus 44 ~~el~qlk~ki~~Les~i~e~~~eLk~kd~~I~ 76 (321)
..+++.++.+|..|+..-+.+.+++..++.+|.
T Consensus 11 ~e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le 43 (100)
T 1go4_E 11 REEADTLRLKVEELEGERSRLEEEKRMLEAQLE 43 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346777777777777777766555555555553
No 179
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=48.42 E-value=1.3e+02 Score=28.96 Aligned_cols=25 Identities=16% Similarity=0.355 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 75 VAQKEKAIQDKSERIVSLQKELSSL 99 (321)
Q Consensus 75 I~q~ek~i~e~~~~I~~Lq~eI~~~ 99 (321)
|-.+...-..+..++..|+.+.+.+
T Consensus 30 ~~~~~~~~r~~~~~~~~l~~~~n~~ 54 (421)
T 1ses_A 30 LLALDREVQELKKRLQEVQTERNQV 54 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444
No 180
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=48.16 E-value=43 Score=22.04 Aligned_cols=27 Identities=26% Similarity=0.448 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 75 VAQKEKAIQDKSERIVSLQKELSSLQK 101 (321)
Q Consensus 75 I~q~ek~i~e~~~~I~~Lq~eI~~~qk 101 (321)
+..++....+++...+.|++.|+.+++
T Consensus 5 l~eLE~r~k~le~~naeLEervstLq~ 31 (42)
T 2oqq_A 5 LSELENRVKDLENKNSELEERLSTLQN 31 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444555555555555555544
No 181
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=47.76 E-value=1.2e+02 Score=26.22 Aligned_cols=17 Identities=29% Similarity=0.102 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 020809 72 DEVVAQKEKAIQDKSER 88 (321)
Q Consensus 72 d~~I~q~ek~i~e~~~~ 88 (321)
|.-|..++.+...++.+
T Consensus 19 d~LV~~L~~En~~L~~q 35 (190)
T 4emc_A 19 DLLVANLVNENFVLSEK 35 (190)
T ss_dssp -CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 182
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=47.22 E-value=1.9e+02 Score=27.39 Aligned_cols=45 Identities=20% Similarity=0.261 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 107 AAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEK 151 (321)
Q Consensus 107 ~eeq~~~~~~RireL~k~Ie~Lk~ele~~~~kk~~LEa~a~e~ek 151 (321)
+.+..+.++.|+.+|...-..|..+++.+.....+++.+.+.+..
T Consensus 203 ~~~n~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~lkp 247 (373)
T 3hhm_B 203 IMHNYDKLKSRISEIIDSRRRLEEDLKKQAAEYREIDKRMNSIKP 247 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCh
Confidence 444455566666666666666666655555544444444444433
No 183
>3htk_B Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=46.55 E-value=79 Score=22.72 Aligned_cols=10 Identities=20% Similarity=0.547 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 020809 48 DQLKSKIRSL 57 (321)
Q Consensus 48 ~qlk~ki~~L 57 (321)
++.+.+|.+.
T Consensus 7 ~~~e~kI~~~ 16 (73)
T 3htk_B 7 KDIDDQIQQL 16 (73)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 184
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=45.90 E-value=47 Score=25.59 Aligned_cols=71 Identities=15% Similarity=0.245 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 020809 125 IDNLKKESEKQQKEKEALEARAI-EAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSR 198 (321)
Q Consensus 125 Ie~Lk~ele~~~~kk~~LEa~a~-e~ekk~~el~~~le~Lek~~~Eqk~~l~elE~~lq~~Eeei~kl~~ea~~~ 198 (321)
++.++.+.+....+...+..... +-+-++...-+.+..+...+-+.+.. -.+-.+..|++|.++..+....
T Consensus 16 LD~ir~Efe~~~~e~~~~k~q~~~eyE~ki~~Qi~Emq~Ir~tvyeLE~~---h~kmKq~YEeEI~rLr~eLe~r 87 (92)
T 3vp9_A 16 LDAIRQEFLQVSQEANTYRLQNQKDYDFKMNQQLAEMQQIRNTVYERELT---HRKMKDAYEEEIKHLKLGLEQR 87 (92)
T ss_dssp -CCTTTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHc
Confidence 55555555554444433333332 44443333233333333322222222 2233456778888887766544
No 185
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=45.60 E-value=29 Score=33.54 Aligned_cols=37 Identities=22% Similarity=0.282 Sum_probs=17.4
Q ss_pred chHHHHHHHHHHHHHHHHHhHHHHHHhhhcHHHHHHH
Q 020809 41 SPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQ 77 (321)
Q Consensus 41 ~~l~~el~qlk~ki~~Les~i~e~~~eLk~kd~~I~q 77 (321)
+.++.++.+++.++.+++..+.....++..+.+++.+
T Consensus 6 ~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~ 42 (412)
T 3u06_A 6 AALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQ 42 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555544444444444444333
No 186
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=45.43 E-value=50 Score=25.34 Aligned_cols=29 Identities=17% Similarity=0.391 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 73 EVVAQKEKAIQDKSERIVSLQKELSSLQK 101 (321)
Q Consensus 73 ~~I~q~ek~i~e~~~~I~~Lq~eI~~~qk 101 (321)
....+++..+.+++..|..|..-|...++
T Consensus 36 ~~~~El~~~l~el~e~l~DL~~SI~i~e~ 64 (95)
T 2c5k_T 36 DQEEEIQDILKDVEETIVDLDRSIIVMKR 64 (95)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 44455556666666666666666666543
No 187
>2qih_A Protein USPA1; trimeric, parallel alpha-helical coiled-coil, cell adhesion; 1.90A {Moraxella catarrhalis}
Probab=45.07 E-value=1.3e+02 Score=24.85 Aligned_cols=27 Identities=15% Similarity=0.308 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 167 NDEQKSKIRKTERALKVAEEEMMRAKF 193 (321)
Q Consensus 167 ~~Eqk~~l~elE~~lq~~Eeei~kl~~ 193 (321)
..+....|..|.+....--..|.+-.+
T Consensus 112 QDQHSSDIKTLkKnS~~NTdnI~knka 138 (157)
T 2qih_A 112 QDQHSSDIKTLAKVSAANTDRIAKNKA 138 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHhcchhccchhhhhhH
Confidence 334445555555555444444444433
No 188
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=44.97 E-value=1.1e+02 Score=29.68 Aligned_cols=63 Identities=16% Similarity=0.144 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 129 KKESEKQQKEKEALEARAIEAEKKISDLSAK---LEKLQKINDEQKSKIRKTERALKVAEEEMMRA 191 (321)
Q Consensus 129 k~ele~~~~kk~~LEa~a~e~ekk~~el~~~---le~Lek~~~Eqk~~l~elE~~lq~~Eeei~kl 191 (321)
..+..+...+.+.|.++++.+.+.+..+... .+.+.....+.+.++..++..+..+++++..+
T Consensus 37 ~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (455)
T 2dq0_A 37 DTEWRTKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEVEELKKKIDYY 102 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444444444444444332111 12333334444555555555555555555444
No 189
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=43.99 E-value=61 Score=23.31 Aligned_cols=15 Identities=20% Similarity=0.361 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHH
Q 020809 114 AHARADELEKQIDNL 128 (321)
Q Consensus 114 ~~~RireL~k~Ie~L 128 (321)
++.+|..|+-+|+.+
T Consensus 61 lrr~iq~L~~el~sl 75 (77)
T 3trt_A 61 YRRQVQSLTMEVDAL 75 (77)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhh
Confidence 333444444444444
No 190
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=43.02 E-value=79 Score=22.23 Aligned_cols=22 Identities=36% Similarity=0.344 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 020809 76 AQKEKAIQDKSERIVSLQKELS 97 (321)
Q Consensus 76 ~q~ek~i~e~~~~I~~Lq~eI~ 97 (321)
..++....++..+|..|+.++.
T Consensus 33 ~~L~~~N~~L~~~i~~L~~E~~ 54 (63)
T 1ci6_A 33 KELEKKNEALKERADSLAKEIQ 54 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333344444444433
No 191
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=42.98 E-value=54 Score=19.85 Aligned_cols=25 Identities=24% Similarity=0.388 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 75 VAQKEKAIQDKSERIVSLQKELSSL 99 (321)
Q Consensus 75 I~q~ek~i~e~~~~I~~Lq~eI~~~ 99 (321)
|..+.++|..+.++|..|.-+|..+
T Consensus 4 iaalkqeiaalkkeiaalkfeiaal 28 (33)
T 4dzn_A 4 IAALKQEIAALKKEIAALKFEIAAL 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444445555555555555444
No 192
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=42.53 E-value=1.5e+02 Score=29.25 Aligned_cols=64 Identities=11% Similarity=0.047 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 128 LKKESEKQQKEKEALEARAIEAEKKISDLSAK---LEKLQKINDEQKSKIRKTERALKVAEEEMMRA 191 (321)
Q Consensus 128 Lk~ele~~~~kk~~LEa~a~e~ekk~~el~~~---le~Lek~~~Eqk~~l~elE~~lq~~Eeei~kl 191 (321)
|..+..+...+.+.|.++++.+.+.+..+... .+.+.....+.+.+|..++..+..+++++..+
T Consensus 38 ld~~~r~~~~~~~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~~~l~~~i~~le~~~~~~~~~~~~~ 104 (485)
T 3qne_A 38 EYKEWVKLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADKNLRSK 104 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444444332211 12333334444555556666666565555544
No 193
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=42.39 E-value=51 Score=24.01 Aligned_cols=11 Identities=9% Similarity=0.341 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q 020809 84 DKSERIVSLQK 94 (321)
Q Consensus 84 e~~~~I~~Lq~ 94 (321)
.+..+|..|..
T Consensus 54 ~Lr~~i~~L~~ 64 (70)
T 1gd2_E 54 QLRQKVRQLEE 64 (70)
T ss_dssp HHTTHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 194
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=41.47 E-value=1.1e+02 Score=22.79 Aligned_cols=24 Identities=17% Similarity=0.124 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 76 AQKEKAIQDKSERIVSLQKELSSL 99 (321)
Q Consensus 76 ~q~ek~i~e~~~~I~~Lq~eI~~~ 99 (321)
+.+...+.++..+...|+.++.+.
T Consensus 33 ~DLI~rvdELt~E~e~l~~El~s~ 56 (77)
T 2w83_C 33 NDLIAKVDELTCEKDVLQGELEAV 56 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHH
Confidence 344444444445544555544444
No 195
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=41.13 E-value=1.3e+02 Score=23.67 Aligned_cols=11 Identities=27% Similarity=0.595 Sum_probs=4.5
Q ss_pred HHHHHHHHHHH
Q 020809 115 HARADELEKQI 125 (321)
Q Consensus 115 ~~RireL~k~I 125 (321)
+.++.+|++++
T Consensus 88 q~KiaeLKrqL 98 (107)
T 2k48_A 88 ETKLGELKRQL 98 (107)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33444444443
No 196
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=40.63 E-value=45 Score=19.53 Aligned_cols=20 Identities=40% Similarity=0.569 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHhHH
Q 020809 43 LKIELDQLKSKIRSLESHID 62 (321)
Q Consensus 43 l~~el~qlk~ki~~Les~i~ 62 (321)
++=+-+.++++|..|...|.
T Consensus 5 lefendaleqkiaalkqkia 24 (28)
T 3ra3_A 5 LEFENDALEQKIAALKQKIA 24 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHH
Confidence 33334444444444444443
No 197
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=40.45 E-value=1.1e+02 Score=22.63 Aligned_cols=37 Identities=8% Similarity=0.133 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 152 KISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEM 188 (321)
Q Consensus 152 k~~el~~~le~Lek~~~Eqk~~l~elE~~lq~~Eeei 188 (321)
.+..+...+..+......|-..++.+-.-.-.++.+|
T Consensus 34 ~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~EI 70 (84)
T 1gk4_A 34 TIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEI 70 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 3333344444444444444444444444433444443
No 198
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=38.61 E-value=3.1e+02 Score=27.24 Aligned_cols=20 Identities=15% Similarity=0.247 Sum_probs=7.5
Q ss_pred hhcHHHHHHHHHHHHHHHHH
Q 020809 68 LKGKDEVVAQKEKAIQDKSE 87 (321)
Q Consensus 68 Lk~kd~~I~q~ek~i~e~~~ 87 (321)
+.....+|+.+++.++.++.
T Consensus 358 lddArNEItsaeSaInslqa 377 (602)
T 1cii_A 358 LLDARNKITSAESAVNSARN 377 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 199
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=38.60 E-value=1.4e+02 Score=23.16 Aligned_cols=11 Identities=36% Similarity=0.685 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q 020809 117 RADELEKQIDN 127 (321)
Q Consensus 117 RireL~k~Ie~ 127 (321)
+..-|..+++.
T Consensus 79 KA~~L~~eLe~ 89 (96)
T 1t3j_A 79 KAVQLESELEN 89 (96)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33334433333
No 200
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=38.24 E-value=1.1e+02 Score=22.22 Aligned_cols=67 Identities=13% Similarity=0.169 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 79 EKAIQDKSERIVSLQKELSSLQKK----ETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEAR 145 (321)
Q Consensus 79 ek~i~e~~~~I~~Lq~eI~~~qk~----~~~~~eeq~~~~~~RireL~k~Ie~Lk~ele~~~~kk~~LEa~ 145 (321)
.....++...+..|.+.|+.+... ...........+...+..+...|+.+...+...-..-...+..
T Consensus 21 ~~~~~~i~~~l~~L~~~~~~l~~~W~G~a~~aF~~~~~~~~~~~~~~~~~L~~i~~~L~~~a~~~~~~D~~ 91 (98)
T 3gwk_C 21 TAGSQQVTEVLNLLTQEQAVIDENWDGSTFDSFEAQFNELSPKITEFAQLLEDINQQLLKVADIIEQTDAD 91 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHBCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455566666666666554 5577788777888888888888888887777777555555443
No 201
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=38.01 E-value=48 Score=21.09 Aligned_cols=14 Identities=29% Similarity=0.496 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHhHH
Q 020809 49 QLKSKIRSLESHID 62 (321)
Q Consensus 49 qlk~ki~~Les~i~ 62 (321)
|+..++.+|-+...
T Consensus 5 QLE~kVEeLl~~~~ 18 (36)
T 1kd8_A 5 QLEAEVEEIESEVW 18 (36)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhH
Confidence 33333333333333
No 202
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=38.00 E-value=47 Score=20.96 Aligned_cols=23 Identities=13% Similarity=0.237 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 020809 75 VAQKEKAIQDKSERIVSLQKELS 97 (321)
Q Consensus 75 I~q~ek~i~e~~~~I~~Lq~eI~ 97 (321)
+...+++|+++..+...|+.+|.
T Consensus 9 n~a~qqDIddlkrQN~~Le~Qir 31 (34)
T 1a93_B 9 NDTHQQDIDDLKRQNALLEQQVR 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhhHhhHHHHHHHHHHHHHHHH
Confidence 33444444444455444444443
No 203
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=37.88 E-value=2.1e+02 Score=25.05 Aligned_cols=8 Identities=13% Similarity=0.310 Sum_probs=4.9
Q ss_pred HHHHHHHH
Q 020809 115 HARADELE 122 (321)
Q Consensus 115 ~~RireL~ 122 (321)
+.+||+|+
T Consensus 188 K~KIR~lq 195 (213)
T 1ik9_A 188 KTKIRSLH 195 (213)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 34666666
No 204
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=37.67 E-value=1.1e+02 Score=21.72 Aligned_cols=30 Identities=30% Similarity=0.336 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 72 DEVVAQKEKAIQDKSERIVSLQKELSSLQK 101 (321)
Q Consensus 72 d~~I~q~ek~i~e~~~~I~~Lq~eI~~~qk 101 (321)
+.+|.++-+.-+.++.++.-+|.+|..+|.
T Consensus 26 eAkiQQLmkVN~~ls~Elr~mQ~~lq~LQs 55 (63)
T 2w6a_A 26 EAKVQQLMKVNSSLSDELRKLQREIHKLQA 55 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHhhhHHHHHHHHHHHHHHh
Confidence 444444444444455555555555555544
No 205
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=37.25 E-value=1.7e+02 Score=23.89 Aligned_cols=44 Identities=25% Similarity=0.390 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 121 LEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQ 164 (321)
Q Consensus 121 L~k~Ie~Lk~ele~~~~kk~~LEa~a~e~ekk~~el~~~le~Le 164 (321)
|......|++.|.....++-.++.+.....-.+++++.++.++.
T Consensus 63 L~e~~keLh~~I~~LEeEKYDlE~kvkkq~yEI~dL~~rV~Dl~ 106 (133)
T 1j1d_C 63 LQDLARQLHARVDKVDEERYDIEAKVTKNITEIADLTQKIFDLR 106 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHcchHHHHHHHHHHHHH
Confidence 55556666666666666666666666666666666666666553
No 206
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=37.03 E-value=97 Score=21.39 Aligned_cols=28 Identities=11% Similarity=0.169 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 72 DEVVAQKEKAIQDKSERIVSLQKELSSL 99 (321)
Q Consensus 72 d~~I~q~ek~i~e~~~~I~~Lq~eI~~~ 99 (321)
......++.....+..+|..|..++..+
T Consensus 28 e~~~~~L~~~n~~L~~~i~~L~~e~~~L 55 (61)
T 1t2k_D 28 EKKAEDLSSLNGQLQSEVTLLRNEVAQL 55 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444444444444333
No 207
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=36.96 E-value=1.2e+02 Score=22.15 Aligned_cols=27 Identities=22% Similarity=0.337 Sum_probs=13.7
Q ss_pred HHHHHHHHhHHHHHHhhhcHHHHHHHH
Q 020809 52 SKIRSLESHIDEKTQELKGKDEVVAQK 78 (321)
Q Consensus 52 ~ki~~Les~i~e~~~eLk~kd~~I~q~ 78 (321)
..+..+....+++++.++...+++...
T Consensus 4 k~v~~l~~E~eel~~klk~~~ee~~~~ 30 (71)
T 1uix_A 4 SDVANLANEKEELNNKLKEAQEQLSRL 30 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555554443
No 208
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=36.67 E-value=92 Score=20.64 Aligned_cols=22 Identities=32% Similarity=0.463 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 020809 77 QKEKAIQDKSERIVSLQKELSS 98 (321)
Q Consensus 77 q~ek~i~e~~~~I~~Lq~eI~~ 98 (321)
.+++.|..+.++|.-|++++.+
T Consensus 28 nlekiianlrdeiarlenevas 49 (52)
T 3he5_B 28 NLEKIIANLRDEIARLENEVAS 49 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-
T ss_pred hHHHHHHHHHHHHHHHHHHHhh
Confidence 4455556666666666666544
No 209
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=36.50 E-value=70 Score=23.39 Aligned_cols=27 Identities=15% Similarity=0.311 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHhHHHHHHhhhcHHH
Q 020809 47 LDQLKSKIRSLESHIDEKTQELKGKDE 73 (321)
Q Consensus 47 l~qlk~ki~~Les~i~e~~~eLk~kd~ 73 (321)
++..+.++..|+..+++....+..++.
T Consensus 4 m~aiKkkmqaLk~Ekdna~e~~e~lE~ 30 (75)
T 3mtu_A 4 MDAIKKKMQMLKLDKENALDRAEQAEA 30 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666666555555555
No 210
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=36.39 E-value=1.6e+02 Score=23.38 Aligned_cols=16 Identities=19% Similarity=0.351 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHhHHH
Q 020809 48 DQLKSKIRSLESHIDE 63 (321)
Q Consensus 48 ~qlk~ki~~Les~i~e 63 (321)
.+++..|...|+++..
T Consensus 25 eeLq~Ei~~~E~QL~~ 40 (113)
T 4fi5_A 25 EELQREINAHEGQLVI 40 (113)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444443333
No 211
>2lma_A THP5 peptide; CD4+, immune system; NMR {Synthetic}
Probab=36.27 E-value=12 Score=21.58 Aligned_cols=17 Identities=35% Similarity=0.587 Sum_probs=11.3
Q ss_pred chhhHHHHhHhHHHHHhhhhhcCc
Q 020809 282 EPHVQTLKTKTIEACEATKTAVTP 305 (321)
Q Consensus 282 ~p~~q~~~~~~~~~~~~~~~~~~p 305 (321)
.||+|+ +||+. .+.|+|
T Consensus 2 rpylqt------eyydv-mtvisp 18 (26)
T 2lma_A 2 RPYLQT------EYYDV-MTVISP 18 (26)
T ss_dssp CTTHHH------HHHTT-STTSSG
T ss_pred Cccccc------eeeee-EEEeCC
Confidence 477764 78885 566665
No 212
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=35.06 E-value=76 Score=20.95 Aligned_cols=11 Identities=27% Similarity=0.489 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 020809 117 RADELEKQIDN 127 (321)
Q Consensus 117 RireL~k~Ie~ 127 (321)
||..|+..++.
T Consensus 24 Ri~~LE~KLd~ 34 (43)
T 2pnv_A 24 RIVTLETKLET 34 (43)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 213
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=34.89 E-value=1.4e+02 Score=22.23 Aligned_cols=23 Identities=4% Similarity=0.224 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 020809 108 AEQVDKAHARADELEKQIDNLKK 130 (321)
Q Consensus 108 eeq~~~~~~RireL~k~Ie~Lk~ 130 (321)
+.+-..++.||+.|+..++.=+.
T Consensus 19 E~rN~~Le~~v~~le~~Le~s~~ 41 (79)
T 3cvf_A 19 ETRNAELEHQLRAMERSLEEARA 41 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444333
No 214
>4hpq_C ATG17, KLTH0D15642P; autophagy, protein transport; 3.06A {Lachancea thermotolerans cbs 6340}
Probab=33.93 E-value=3.3e+02 Score=26.25 Aligned_cols=54 Identities=11% Similarity=0.113 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 46 ELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSL 99 (321)
Q Consensus 46 el~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~ 99 (321)
-+.=+...-.+|.+.+.++..-++..+......++.+..+...+..+.+.+..+
T Consensus 236 lleVv~~Da~EL~~V~~eL~~~~~~i~~~~~~~~~~l~~~~~~~~~l~~~~~~l 289 (413)
T 4hpq_C 236 LFEIVERDDKDLAAINSLLQDAAIDVASFVRKVNMLLDERDADKAKMQATLSKL 289 (413)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666666666666666667666666677777777776666666555
No 215
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=33.38 E-value=76 Score=30.17 Aligned_cols=58 Identities=21% Similarity=0.304 Sum_probs=39.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 70 GKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQ 136 (321)
Q Consensus 70 ~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~qk~~~~~~eeq~~~~~~RireL~k~Ie~Lk~ele~~~ 136 (321)
..+..++.++.++..+..+|..++..++... +. .+.+.++++++++++.+++.+....
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-------~k~~~~~~~~~~~~~~~~~~~~~~~ 301 (426)
T 1lrz_A 244 NFDEYIKELNEERDILNKDLNKALKDIEKRP--EN-------KKAHNKRDNLQQQLDANEQKIEEGK 301 (426)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT--TC-------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhhCc--cc-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777777777777777777777764331 11 2445688888888888877777654
No 216
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1
Probab=33.36 E-value=4.1e+02 Score=27.20 Aligned_cols=151 Identities=10% Similarity=0.168 Sum_probs=68.9
Q ss_pred CchHHHHHHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 020809 40 SSPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARAD 119 (321)
Q Consensus 40 ~~~l~~el~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~qk~~~~~~eeq~~~~~~Rir 119 (321)
...+....+.|.......+............++..+.+......++..=|...+..+.+..- +..++. .+..+-++-.
T Consensus 337 ~~~i~~~w~~L~~~~~~r~~~l~~~~~R~~~Le~l~~~F~~~~~~~~~Wl~~~e~~l~~~~~-g~~dl~-~v~~ll~kh~ 414 (863)
T 1sjj_A 337 VSDINNAWGGLEQAEKGYEEWLLNEIRRLERLDHLAEKFRQKASIHESWTDGKEAMLQQKDY-ETATLS-EIKALLKKHE 414 (863)
T ss_dssp GGGHHHHHHHHHHHHTTTHHHHHHHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTT-TSSCHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-cCCCHH-HHHHHHHHHH
Confidence 45556656666555443333333333333333333444444444444444444443332100 100111 1112222333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 120 ELEKQIDNLKKESEKQQKEKEALEA----RAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAK 192 (321)
Q Consensus 120 eL~k~Ie~Lk~ele~~~~kk~~LEa----~a~e~ekk~~el~~~le~Lek~~~Eqk~~l~elE~~lq~~Eeei~kl~ 192 (321)
.++..|......+.........|.. ....+..+...++..-+.|..........|.......+.++.......
T Consensus 415 ~f~~el~~~~~~v~~l~~~~~~L~~~~~~~~~~I~~~~~~l~~~W~~L~~~~~~R~~~L~~~l~~~q~~~~l~~~f~ 491 (863)
T 1sjj_A 415 AFESDLAAHQDRVEQIAAIAQELNELDYYDSPSVNARCQKICDQWDNLGALTQKRREALERTEKLLETIDQLYLEYA 491 (863)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444433333333333332222221 224556667777777777777777777777776666655555444433
No 217
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=33.20 E-value=1.2e+02 Score=21.09 Aligned_cols=20 Identities=30% Similarity=0.219 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 020809 77 QKEKAIQDKSERIVSLQKEL 96 (321)
Q Consensus 77 q~ek~i~e~~~~I~~Lq~eI 96 (321)
.++.+...+..+|..|..++
T Consensus 34 ~L~~~n~~L~~ei~~L~~e~ 53 (63)
T 2wt7_A 34 QLEDEKSALQTEIANLLKEK 53 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 218
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=32.82 E-value=55 Score=22.47 Aligned_cols=32 Identities=13% Similarity=0.226 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHhhhcHHHHH
Q 020809 44 KIELDQLKSKIRSLESHIDEKTQELKGKDEVV 75 (321)
Q Consensus 44 ~~el~qlk~ki~~Les~i~e~~~eLk~kd~~I 75 (321)
..+.+.|+....+|+.++..+..++.++...+
T Consensus 18 ~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 18 NPEIELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666665555555555444433
No 219
>1avy_A Fibritin, gpwac M; bacteriophage T4, structural protein, chaperone, bacteriopha assembly, protein folding; 1.85A {Enterobacteria phage T4} SCOP: h.1.17.1
Probab=32.11 E-value=93 Score=22.79 Aligned_cols=28 Identities=21% Similarity=0.349 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 72 DEVVAQKEKAIQDKSERIVSLQKELSSL 99 (321)
Q Consensus 72 d~~I~q~ek~i~e~~~~I~~Lq~eI~~~ 99 (321)
+..|.....+++.+...|..++.+|..+
T Consensus 14 eT~iaa~~~ev~t~~~~l~~~e~~vqaL 41 (74)
T 1avy_A 14 ETDIASVRQEVNTAKGNISSLQGDVQAL 41 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhheeeccccchhhhhhhhhHHH
Confidence 3333333333334444444444444444
No 220
>2ou1_A Apolipoprotein A-II; high density lipoproteins, helix, cholesterol metabolism X-RAY diffraction, lipid binding protein; 2.00A {Homo sapiens} PDB: 1l6l_A
Probab=31.61 E-value=25 Score=25.86 Aligned_cols=37 Identities=16% Similarity=0.187 Sum_probs=18.2
Q ss_pred chhhHHHHhHhHHHHHhhhh-----hcCchhHHHHhhhcccc
Q 020809 282 EPHVQTLKTKTIEACEATKT-----AVTPHIIRVQEVVDPYF 318 (321)
Q Consensus 282 ~p~~q~~~~~~~~~~~~~~~-----~~~ph~~k~~~~~~py~ 318 (321)
--|+|+++..++...+.++. -.+-.|+|-|+.+-|.+
T Consensus 12 SqYfQt~TdyGKDL~EKak~~ElQ~QakaYfektqeqltPlv 53 (77)
T 2ou1_A 12 SQYFQTVTDYGKDLMEKVKSPELQAEAKSYFEKSKEQLTPLI 53 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHTTTSHHH
T ss_pred HHHHHHHHHHhHHHHHHcccHHHHHHHHHHHHHHHHHHhHHH
Confidence 34555555555555554332 23444555555555544
No 221
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=31.45 E-value=2.6e+02 Score=24.83 Aligned_cols=57 Identities=19% Similarity=0.231 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 020809 140 EALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEAT 196 (321)
Q Consensus 140 ~~LEa~a~e~ekk~~el~~~le~Lek~~~Eqk~~l~elE~~lq~~Eeei~kl~~ea~ 196 (321)
.-+-.+.+.+.+++..++..+.+++.....+.+.+.+..+++..+.+..++.-.+..
T Consensus 167 ~yLa~R~~~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (228)
T 3q0x_A 167 QFLAFRLSEVKGTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLREQYDKHLLEVQ 223 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeee
Confidence 334455555556666666666666666666667777777777777677766654443
No 222
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=31.39 E-value=2.6e+02 Score=24.34 Aligned_cols=14 Identities=29% Similarity=0.335 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHHH
Q 020809 127 NLKKESEKQQKEKE 140 (321)
Q Consensus 127 ~Lk~ele~~~~kk~ 140 (321)
++.+++++....+.
T Consensus 157 ~l~~qlE~~v~~K~ 170 (213)
T 1ik9_A 157 DVQGRFEKAVSAKE 170 (213)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 223
>1oef_A Apolipoprotein E; glycoprotein, plasma, lipid transport, HDL, VLDL, chylomicron, sialic acid, heparin-binding; NMR {Homo sapiens} SCOP: j.39.1.1
Probab=31.20 E-value=40 Score=19.54 Aligned_cols=15 Identities=33% Similarity=1.008 Sum_probs=7.3
Q ss_pred ccchhHHhhhhhhhh
Q 020809 254 WVQPHVETIKAKWIP 268 (321)
Q Consensus 254 ~~~ph~~~~~~k~~p 268 (321)
|..|+++.++.+|-.
T Consensus 2 ~~~P~~e~ik~q~~~ 16 (26)
T 1oef_A 2 WFEPLVEDMQRQWAG 16 (26)
T ss_dssp CCTTHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHH
Confidence 445555555544433
No 224
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=31.09 E-value=2.4e+02 Score=25.49 Aligned_cols=19 Identities=26% Similarity=0.251 Sum_probs=8.9
Q ss_pred CCchHHHHHHHHHHHHHHH
Q 020809 39 DSSPLKIELDQLKSKIRSL 57 (321)
Q Consensus 39 ~~~~l~~el~qlk~ki~~L 57 (321)
+...++.++.+++..+..+
T Consensus 64 d~~~~~~~l~~~~a~l~~~ 82 (369)
T 4dk0_A 64 DSTTQINTLNTRKAALASY 82 (369)
T ss_dssp CCHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHH
Confidence 4444455555554444433
No 225
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=30.85 E-value=1.2e+02 Score=23.21 Aligned_cols=30 Identities=10% Similarity=0.222 Sum_probs=15.9
Q ss_pred HHHHhhhcHHHHHHHHHHHHHHHHHHHHHH
Q 020809 63 EKTQELKGKDEVVAQKEKAIQDKSERIVSL 92 (321)
Q Consensus 63 e~~~eLk~kd~~I~q~ek~i~e~~~~I~~L 92 (321)
+....|...+..|++++..|..++-++..+
T Consensus 35 erk~~i~~ie~~l~EA~ell~qMelE~r~~ 64 (102)
T 1vcs_A 35 EKKQMVANVEKQLEEARELLEQMDLEVREI 64 (102)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 334445555555555555555555554444
No 226
>2yny_A General control protein GCN4, putative inner MEMB protein; FGG domain, trimeric autotransporter adhesin, TAA, membrane chimera; 1.35A {Saccharomyces cerevisiae} PDB: 1w5i_A
Probab=30.74 E-value=89 Score=24.64 Aligned_cols=29 Identities=17% Similarity=0.343 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 71 KDEVVAQKEKAIQDKSERIVSLQKELSSL 99 (321)
Q Consensus 71 kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~ 99 (321)
+|..+......|.++..+|..++++|...
T Consensus 74 ld~svt~i~~~I~~lt~~i~~~~~~i~~~ 102 (106)
T 2yny_A 74 LNTSMKQIEDKIEEILSKIYHIENEIARI 102 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555556666666665554
No 227
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=30.65 E-value=1.7e+02 Score=22.97 Aligned_cols=43 Identities=16% Similarity=0.167 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 121 LEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKL 163 (321)
Q Consensus 121 L~k~Ie~Lk~ele~~~~kk~~LEa~a~e~ekk~~el~~~le~L 163 (321)
|......|.+.|.....++-.||.+.....-.+++|+.++.++
T Consensus 47 L~e~~keLh~~I~~lEeEKYDlE~kv~kq~yEI~eL~~rV~dl 89 (107)
T 1ytz_T 47 LRDKAKELWDWLYQLQTEKYDFAEQIKRKKYEIVTLRNRIDQA 89 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHh
Confidence 5555666666666666666666666666556666666665554
No 228
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=30.51 E-value=1.3e+02 Score=28.47 Aligned_cols=28 Identities=25% Similarity=0.345 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 106 NAAEQVDKAHARADELEKQIDNLKKESE 133 (321)
Q Consensus 106 ~~eeq~~~~~~RireL~k~Ie~Lk~ele 133 (321)
+.++....++.++..|++.++++...++
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (426)
T 1lrz_A 244 NFDEYIKELNEERDILNKDLNKALKDIE 271 (426)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444455555566666666666665554
No 229
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=30.23 E-value=1.8e+02 Score=21.97 Aligned_cols=27 Identities=15% Similarity=0.292 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 73 EVVAQKEKAIQDKSERIVSLQKELSSL 99 (321)
Q Consensus 73 ~~I~q~ek~i~e~~~~I~~Lq~eI~~~ 99 (321)
.+|+.-+.+|..++..|......|..+
T Consensus 51 ~el~~h~~ei~~le~~i~rhk~~i~~l 77 (84)
T 1gmj_A 51 NEISHHAKEIERLQKEIERHKQSIKKL 77 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444444544444444444
No 230
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=30.20 E-value=1.8e+02 Score=23.59 Aligned_cols=19 Identities=16% Similarity=0.277 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhHHHH
Q 020809 46 ELDQLKSKIRSLESHIDEK 64 (321)
Q Consensus 46 el~qlk~ki~~Les~i~e~ 64 (321)
+|.+.++++...+.....+
T Consensus 10 ELqEsqskL~~Ae~~k~~L 28 (130)
T 3cl3_D 10 ELQESQSRLEAATKECQAL 28 (130)
T ss_dssp -------------------
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333444443333333333
No 231
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=29.65 E-value=71 Score=23.14 Aligned_cols=22 Identities=27% Similarity=0.407 Sum_probs=8.6
Q ss_pred HHhHHHHHHhhhcHHHHHHHHH
Q 020809 58 ESHIDEKTQELKGKDEVVAQKE 79 (321)
Q Consensus 58 es~i~e~~~eLk~kd~~I~q~e 79 (321)
...|+++...|..+|..|.++.
T Consensus 24 de~I~eLE~~L~~kd~eI~eLr 45 (67)
T 1zxa_A 24 EERIKELEKRLSEKEEEIQELK 45 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334443333333344444333
No 232
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=29.58 E-value=2.1e+02 Score=25.94 Aligned_cols=12 Identities=0% Similarity=0.113 Sum_probs=4.6
Q ss_pred HHHHHHHHHHhH
Q 020809 50 LKSKIRSLESHI 61 (321)
Q Consensus 50 lk~ki~~Les~i 61 (321)
++.++..++..+
T Consensus 68 ~~~~l~~~~a~l 79 (369)
T 4dk0_A 68 QINTLNTRKAAL 79 (369)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333444443333
No 233
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=29.45 E-value=3.2e+02 Score=26.86 Aligned_cols=25 Identities=12% Similarity=0.170 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 167 NDEQKSKIRKTERALKVAEEEMMRA 191 (321)
Q Consensus 167 ~~Eqk~~l~elE~~lq~~Eeei~kl 191 (321)
..+.+.+|..++..+..+++++..+
T Consensus 113 ~~~l~~~i~~le~~~~~~~~~~~~~ 137 (484)
T 3lss_A 113 SKDLSDQVAGLAKEAQQLEEERDKL 137 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666666666666665544
No 234
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=29.34 E-value=1.1e+02 Score=19.38 Aligned_cols=12 Identities=50% Similarity=0.717 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q 020809 48 DQLKSKIRSLES 59 (321)
Q Consensus 48 ~qlk~ki~~Les 59 (321)
+|++.++.+|-+
T Consensus 4 nQLE~KVEeLl~ 15 (36)
T 1kd8_B 4 KQLKAKVEELKS 15 (36)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 333333333333
No 235
>3fav_B ESAT-6, 6 kDa early secretory antigenic target; complex, operon structure, four-helical-bundle, coiled-coil, WXG-motif, secreted; 2.15A {Mycobacterium tuberculosis} SCOP: a.25.3.1 PDB: 1wa8_B
Probab=28.83 E-value=1.6e+02 Score=21.14 Aligned_cols=68 Identities=13% Similarity=0.131 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 71 KDEVVAQKEKAIQDKSERIVSLQKELSSLQKK----ETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKE 138 (321)
Q Consensus 71 kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~qk~----~~~~~eeq~~~~~~RireL~k~Ie~Lk~ele~~~~k 138 (321)
++.....+.....++...+..|.+.+..+... ....+.......+....+|...+..+...+......
T Consensus 10 l~~~a~~~~~~~~~i~~~l~~l~~~v~~l~~~W~G~A~~af~~~~~~w~~~~~~~~~~L~~i~~~l~~~~~~ 81 (94)
T 3fav_B 10 IEAAASAIQGNVTSIHSLLDEGKQSLTKLAAAWGGSGSEAYQGVQQKWDATATELNNALQNLARTISEAGQA 81 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGGTCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555666667777777777777554 567788888888888888888888887777665533
No 236
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=27.64 E-value=77 Score=19.96 Aligned_cols=13 Identities=23% Similarity=0.294 Sum_probs=5.0
Q ss_pred HHHHHHHhHHHHH
Q 020809 53 KIRSLESHIDEKT 65 (321)
Q Consensus 53 ki~~Les~i~e~~ 65 (321)
+....+..|+++.
T Consensus 8 Kn~a~qqDIddlk 20 (34)
T 1a93_B 8 KNDTHQQDIDDLK 20 (34)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hhHhhHhhHHHHH
Confidence 3333333333333
No 237
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=27.61 E-value=2.3e+02 Score=22.44 Aligned_cols=22 Identities=32% Similarity=0.335 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 020809 140 EALEARAIEAEKKISDLSAKLE 161 (321)
Q Consensus 140 ~~LEa~a~e~ekk~~el~~~le 161 (321)
..|-.+....+..+.++.....
T Consensus 48 ~~L~~~~q~sE~~L~~Lqq~fs 69 (112)
T 1x79_B 48 SALVLRAQASEILLEELQQGLS 69 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444333333
No 238
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=27.38 E-value=2.6e+02 Score=23.03 Aligned_cols=20 Identities=25% Similarity=0.122 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 020809 170 QKSKIRKTERALKVAEEEMM 189 (321)
Q Consensus 170 qk~~l~elE~~lq~~Eeei~ 189 (321)
|+..+..|..++..+.+...
T Consensus 105 QedL~~DL~eDL~ka~etf~ 124 (141)
T 3okq_A 105 QEELILDLKEDLGKALETFD 124 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555544443
No 239
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=26.80 E-value=2.7e+02 Score=23.00 Aligned_cols=11 Identities=27% Similarity=0.371 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q 020809 126 DNLKKESEKQQ 136 (321)
Q Consensus 126 e~Lk~ele~~~ 136 (321)
..|.+++++++
T Consensus 89 ~rL~~E~~dR~ 99 (152)
T 4fla_A 89 GRLAAELEDRR 99 (152)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 240
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=26.58 E-value=1.4e+02 Score=19.50 Aligned_cols=20 Identities=45% Similarity=0.554 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 020809 141 ALEARAIEAEKKISDLSAKL 160 (321)
Q Consensus 141 ~LEa~a~e~ekk~~el~~~l 160 (321)
.||+....+++++..+.+++
T Consensus 24 aleselqalekklaalkskl 43 (48)
T 1g6u_A 24 ALESELQALEKKLAALKSKL 43 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443
No 241
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=26.25 E-value=1.9e+02 Score=21.08 Aligned_cols=28 Identities=25% Similarity=0.293 Sum_probs=15.3
Q ss_pred HHHHHHHHHHhHHHHHHhhhcHHHHHHH
Q 020809 50 LKSKIRSLESHIDEKTQELKGKDEVVAQ 77 (321)
Q Consensus 50 lk~ki~~Les~i~e~~~eLk~kd~~I~q 77 (321)
|...+..+....++++..++...+++..
T Consensus 4 L~k~i~~l~~E~eel~~klk~~~ee~~~ 31 (71)
T 1s1c_X 4 LTKDIEILRRENEELTEKMKKAEEEYKL 31 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555544
No 242
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=26.11 E-value=2.1e+02 Score=21.57 Aligned_cols=30 Identities=7% Similarity=0.079 Sum_probs=16.5
Q ss_pred HHHHhhhcHHHHHHHHHHHHHHHHHHHHHH
Q 020809 63 EKTQELKGKDEVVAQKEKAIQDKSERIVSL 92 (321)
Q Consensus 63 e~~~eLk~kd~~I~q~ek~i~e~~~~I~~L 92 (321)
+...-|...+..+++++..|..++-++..+
T Consensus 31 ~Rk~~i~~ie~~ldEA~ell~qMelE~~~~ 60 (97)
T 3onj_A 31 QRNTTLKHVEQQQDELFDLLDQMDVEVNNS 60 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 444455555555555555555555555555
No 243
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=26.04 E-value=88 Score=18.12 Aligned_cols=17 Identities=12% Similarity=0.354 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 020809 111 VDKAHARADELEKQIDN 127 (321)
Q Consensus 111 ~~~~~~RireL~k~Ie~ 127 (321)
.+.++..+|.|+.++.+
T Consensus 9 vgelkgevralkdevkd 25 (27)
T 3v86_A 9 VGELKGEVRALKDEVKD 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHhc
Confidence 33444444444444433
No 244
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=25.97 E-value=2.4e+02 Score=22.13 Aligned_cols=20 Identities=5% Similarity=0.076 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 020809 108 AEQVDKAHARADELEKQIDN 127 (321)
Q Consensus 108 eeq~~~~~~RireL~k~Ie~ 127 (321)
+..++-+-.++|+++-.+..
T Consensus 38 EkERDFYF~KLRdIEiLcQe 57 (106)
T 4e61_A 38 EIEREFYFNKLRDIEILVHT 57 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444455554444433
No 245
>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}
Probab=25.96 E-value=1.8e+02 Score=20.80 Aligned_cols=64 Identities=11% Similarity=0.114 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 80 KAIQDKSERIVSLQKELSSLQKK----ETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALE 143 (321)
Q Consensus 80 k~i~e~~~~I~~Lq~eI~~~qk~----~~~~~eeq~~~~~~RireL~k~Ie~Lk~ele~~~~kk~~LE 143 (321)
....+++..+..|.+.|+.+... ...............++.+...|..+...+......-...+
T Consensus 23 ~~~~~i~~~l~~L~~~v~~L~~~W~G~a~~af~~~~~~~~~~~~~~~~~L~~i~~~L~~~a~~~~~~d 90 (99)
T 3zbh_A 23 VESSNVTELIARLDQMSHTLQGIWEGASSEAFIQQYQELRPSFEKMAVLLNEVGQQLHNSATILEDTD 90 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555555555555443 44566666666666777777777777766666664444444
No 246
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=25.75 E-value=1.4e+02 Score=21.52 Aligned_cols=25 Identities=36% Similarity=0.504 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 108 AEQVDKAHARADELEKQIDNLKKES 132 (321)
Q Consensus 108 eeq~~~~~~RireL~k~Ie~Lk~el 132 (321)
-.+--+++.++.-|..+|+.+..++
T Consensus 31 FAKWaKL~Rk~DKl~~ele~l~~~l 55 (65)
T 3sja_C 31 YAKWTKNNRKLDSLDKEINNLKDEI 55 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333344444444444444444433
No 247
>3m0a_A TNF receptor-associated factor 2; TRAF2: CIAP2 and the TRAF1: TRAF2: CIAP2 complexes, apoptosi coil, cytoplasm, metal-binding; 2.61A {Homo sapiens} PDB: 3m0d_A 3m06_A
Probab=25.57 E-value=1.7e+02 Score=20.27 Aligned_cols=53 Identities=13% Similarity=0.155 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 43 LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKE 95 (321)
Q Consensus 43 l~~el~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~e 95 (321)
+..+...+..++..++..+...+.++......++........-...|..|++.
T Consensus 3 ~~~~~~~le~k~~~~e~iv~~l~~~v~~~~~~le~~~~q~~~~~~~i~~Le~k 55 (66)
T 3m0a_A 3 LLQRCESLEKKTATFENIVCVLNREVERVAMTAEACSRQHRLDQDKIEALSSK 55 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHhHHHHHHHH
Confidence 34455556666666666666655555555555555544433334444444443
No 248
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=25.24 E-value=3.2e+02 Score=23.37 Aligned_cols=44 Identities=25% Similarity=0.390 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 121 LEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQ 164 (321)
Q Consensus 121 L~k~Ie~Lk~ele~~~~kk~~LEa~a~e~ekk~~el~~~le~Le 164 (321)
|......|++.|.....++-.|+.+.....-.+++|+..+.++.
T Consensus 63 L~e~ckELh~~I~~LEeEKYDlE~kvkkqdyEI~dL~~rV~DLr 106 (180)
T 1j1e_C 63 LQDLARQLHARVDKVDEERYDIEAKVTKNITEIADLTQKIFDLR 106 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHhcchhHHHHHHHHHHHH
Confidence 44555555566655555556666666555556666666666553
No 249
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=25.13 E-value=1.7e+02 Score=20.04 Aligned_cols=45 Identities=20% Similarity=0.303 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 113 KAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLS 157 (321)
Q Consensus 113 ~~~~RireL~k~Ie~Lk~ele~~~~kk~~LEa~a~e~ekk~~el~ 157 (321)
.+-..+.+|+++=.-|+++++.....+..||.....+..-+..++
T Consensus 7 QL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk~lq 51 (54)
T 1deb_A 7 QLLKQVEALKMENSNLRQELEDNSNHLTKLETEASNMKEVLKQLQ 51 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHc
Confidence 344455666666666777777777777777777777666555444
No 250
>3fav_A ESAT-6-like protein ESXB; complex, operon structure, four-helical-bundle, coiled-coil, WXG-motif, secreted; 2.15A {Mycobacterium tuberculosis} SCOP: a.25.3.1 PDB: 1wa8_A
Probab=25.06 E-value=2e+02 Score=21.03 Aligned_cols=62 Identities=16% Similarity=0.211 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 79 EKAIQDKSERIVSLQKELSSLQKK----ETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKE 140 (321)
Q Consensus 79 ek~i~e~~~~I~~Lq~eI~~~qk~----~~~~~eeq~~~~~~RireL~k~Ie~Lk~ele~~~~kk~ 140 (321)
.....+++..+..|.+.++.+... ....+.......+.....|...|..+...+......-.
T Consensus 20 ~~~~~~l~~~l~~l~~~~~~L~~~W~G~A~~af~~~~~~w~~~~~~l~~~L~~i~~~l~~~a~~y~ 85 (101)
T 3fav_A 20 ERISGDLKTQIDQVESTAGSLQGQWRGAAGTAAQAAVVRFQEAANKQKQELDEISTNIRQAGVQYS 85 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555566666555443 45667777777777777888888888777777664443
No 251
>2d4y_A HAP1, flagellar HOOK-associated protein 1; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 2.10A {Salmonella typhimurium}
Probab=24.72 E-value=4.1e+02 Score=25.38 Aligned_cols=52 Identities=13% Similarity=0.228 Sum_probs=33.8
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhhHHHHHHHHHHHHHHHH
Q 020809 69 KGKDEVVAQKEKAIQDKSERIVSLQKELSSLQK----KETLNAAEQVDKAHARADE 120 (321)
Q Consensus 69 k~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~qk----~~~~~~eeq~~~~~~Rire 120 (321)
...+.+|...-.+|+.+-.+|+.|..+|...+. ..-.++-.+++.+=.++-.
T Consensus 92 ~~~n~~i~~~V~~iN~l~~qIa~LN~qI~~~~~~~~g~~~ndLlDqRD~ll~eLS~ 147 (463)
T 2d4y_A 92 KQVNIAIGSSVAQINNYAKQIANLNDQISRMTGVGAGASPNDLLDQRDQLVSELNK 147 (463)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchHhHHHHHHHHHHHHh
Confidence 344567888888888888999999999976642 1123566666655444444
No 252
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=24.70 E-value=3.8e+02 Score=24.01 Aligned_cols=71 Identities=18% Similarity=0.109 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 121 LEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRA 191 (321)
Q Consensus 121 L~k~Ie~Lk~ele~~~~kk~~LEa~a~e~ekk~~el~~~le~Lek~~~Eqk~~l~elE~~lq~~Eeei~kl 191 (321)
|+++-+.+-.+++-..-++.-..+..+++..+++.|+.....+-+..+-.+..--.|+..+..++..+.-+
T Consensus 154 Lkk~~~~i~~~LelL~IRK~ma~sEI~EID~KI~~L~~mR~~vl~RLA~lEqdEl~LE~eL~~V~~Rief~ 224 (242)
T 3uux_B 154 LKSFSQTLVNSLEFLNIQKNSTLSEIRDIEVEVENLRQKKEKLLGKIANIEQNQLLLEDNLKQIDDRLDFL 224 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555555555555555555555555555555555555555666666666555544
No 253
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=24.49 E-value=1.8e+02 Score=20.19 Aligned_cols=27 Identities=19% Similarity=0.297 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 73 EVVAQKEKAIQDKSERIVSLQKELSSL 99 (321)
Q Consensus 73 ~~I~q~ek~i~e~~~~I~~Lq~eI~~~ 99 (321)
..+..++.....++.+-..|..+|..+
T Consensus 23 ~~~~~Le~~v~~L~~~n~~L~~ei~~L 49 (63)
T 2wt7_A 23 ELTDTLQAETDQLEDEKSALQTEIANL 49 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444
No 254
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=24.42 E-value=46 Score=31.20 Aligned_cols=13 Identities=23% Similarity=0.631 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHHH
Q 020809 84 DKSERIVSLQKEL 96 (321)
Q Consensus 84 e~~~~I~~Lq~eI 96 (321)
.++.+|..|+..|
T Consensus 29 ~~~~ki~~L~~~i 41 (319)
T 1fzc_C 29 SNNQKIVNLKEKV 41 (319)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 255
>4etp_B Spindle POLE BODY-associated protein VIK1; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=24.02 E-value=1.7e+02 Score=27.52 Aligned_cols=16 Identities=31% Similarity=0.507 Sum_probs=6.0
Q ss_pred hHHHHHHHHHHHHHHH
Q 020809 42 PLKIELDQLKSKIRSL 57 (321)
Q Consensus 42 ~l~~el~qlk~ki~~L 57 (321)
++..+++.++..++.+
T Consensus 7 ~~~~e~~~~~~~~~~v 22 (333)
T 4etp_B 7 ALEKEIAALEKEIAAL 22 (333)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333443333333333
No 256
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=23.99 E-value=2.1e+02 Score=20.87 Aligned_cols=53 Identities=26% Similarity=0.354 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 49 QLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQK 101 (321)
Q Consensus 49 qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~qk 101 (321)
.++..+..|++...+...+|..+.+.|.=..+..+.+.++|=++.-+=+-++.
T Consensus 15 ~~~~~l~~Lr~eL~~Ke~eI~~L~e~i~lk~kd~ErLNDEiislNIENNlL~~ 67 (75)
T 3a7o_A 15 ALLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNDELISGTIENNVLQQ 67 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHhhHHHHHhHHHHHHHHH
Confidence 34445666666666666666666666666666666666666666655555543
No 257
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=23.92 E-value=1.8e+02 Score=19.96 Aligned_cols=26 Identities=35% Similarity=0.239 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 74 VVAQKEKAIQDKSERIVSLQKELSSL 99 (321)
Q Consensus 74 ~I~q~ek~i~e~~~~I~~Lq~eI~~~ 99 (321)
.+..++.....++.+...|.++|..+
T Consensus 23 ~~~~Le~~~~~L~~~n~~L~~~i~~L 48 (61)
T 1t2k_D 23 WVQSLEKKAEDLSSLNGQLQSEVTLL 48 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444433333333333
No 258
>1z56_A Ligase interacting factor 1; DNA repair, BRCT, NHEJ, XRCC4, DNA ligase, coiled-coil; HET: DNA; 3.92A {Saccharomyces cerevisiae}
Probab=23.74 E-value=44 Score=30.15 Aligned_cols=60 Identities=17% Similarity=0.202 Sum_probs=32.3
Q ss_pred CCchHHHHHHHHHHHHHHHHHhHHHHHHhhhcHHHHH--------HHHHHHHHHHHHHHHHHHHHHHH
Q 020809 39 DSSPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVV--------AQKEKAIQDKSERIVSLQKELSS 98 (321)
Q Consensus 39 ~~~~l~~el~qlk~ki~~Les~i~e~~~eLk~kd~~I--------~q~ek~i~e~~~~I~~Lq~eI~~ 98 (321)
+..+++.+..+++..+..|+++++++.+.-...|.=| +..-..++++..+|..++.-+.+
T Consensus 165 ~i~~ln~k~~~~E~si~~L~~qLeElv~~k~~~dqLi~~RD~~tR~~fv~LLNEKK~KIR~qqrlL~s 232 (246)
T 1z56_A 165 DICCVNDSYRNIKESDSSNRNRVEQLARERELLDKLLETRDERTRAMMVTLLNEKKKKIRELHEILRQ 232 (246)
T ss_dssp GTTHHHHHHHHTTTTTTHHHHHHHHTTTTHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHGGGTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 4444455555555555555555555544444444334 55556666777776666655444
No 259
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=23.33 E-value=1.4e+02 Score=26.79 Aligned_cols=19 Identities=11% Similarity=0.326 Sum_probs=8.8
Q ss_pred CCchHHHHHHHHHHHHHHH
Q 020809 39 DSSPLKIELDQLKSKIRSL 57 (321)
Q Consensus 39 ~~~~l~~el~qlk~ki~~L 57 (321)
+...++.++.+++..+..+
T Consensus 63 d~~~~~~~~~~~~a~l~~~ 81 (341)
T 3fpp_A 63 DPEQAENQIKEVEATLMEL 81 (341)
T ss_dssp CCHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHH
Confidence 4444455555544444443
No 260
>1avy_A Fibritin, gpwac M; bacteriophage T4, structural protein, chaperone, bacteriopha assembly, protein folding; 1.85A {Enterobacteria phage T4} SCOP: h.1.17.1
Probab=22.97 E-value=1.7e+02 Score=21.40 Aligned_cols=33 Identities=21% Similarity=0.327 Sum_probs=17.9
Q ss_pred HHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHH
Q 020809 53 KIRSLESHIDEKTQELKGKDEVVAQKEKAIQDK 85 (321)
Q Consensus 53 ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~ 85 (321)
.+..++..|..++.+++.....|..+|..+..+
T Consensus 9 sVk~~eT~iaa~~~ev~t~~~~l~~~e~~vqaL 41 (74)
T 1avy_A 9 KIKAIETDIASVRQEVNTAKGNISSLQGDVQAL 41 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccccchhhhheeeccccchhhhhhhhhHHH
Confidence 345556666666666555555555555444433
No 261
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=22.76 E-value=2.4e+02 Score=22.08 Aligned_cols=34 Identities=15% Similarity=0.164 Sum_probs=16.5
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHhhhcHHHHH
Q 020809 42 PLKIELDQLKSKIRSLESHIDEKTQELKGKDEVV 75 (321)
Q Consensus 42 ~l~~el~qlk~ki~~Les~i~e~~~eLk~kd~~I 75 (321)
.|+....++=.+|..|++..=++...+...+.+|
T Consensus 46 ~L~e~~keLh~~I~~lEeEKYDlE~kv~kq~yEI 79 (107)
T 1ytz_T 46 KLRDKAKELWDWLYQLQTEKYDFAEQIKRKKYEI 79 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhHH
Confidence 4555555555555555555555443333333333
No 262
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=22.73 E-value=2.6e+02 Score=21.33 Aligned_cols=48 Identities=21% Similarity=0.238 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHH-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 020809 151 KKISDLSAKLEKLQKI-N-DEQKSKIRKTERALKVAEEEMMRAKFEATSR 198 (321)
Q Consensus 151 kk~~el~~~le~Lek~-~-~Eqk~~l~elE~~lq~~Eeei~kl~~ea~~~ 198 (321)
....+++.++..+... . .+.+..+.+.+..+..+++-+.++..|++..
T Consensus 26 ~l~~~i~~kl~~i~~~~~~e~rk~~i~~ie~~ldEA~eLl~qMelE~r~~ 75 (102)
T 2qyw_A 26 GLLEDLQGVPERLLGTAGTEEKKKLVRDFDEKQQEANETLAEMEEELRYA 75 (102)
T ss_dssp HHHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3444455555554322 2 5667788888888888888888887777643
No 263
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B
Probab=22.69 E-value=2e+02 Score=19.95 Aligned_cols=41 Identities=12% Similarity=0.174 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHH
Q 020809 44 KIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQD 84 (321)
Q Consensus 44 ~~el~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e 84 (321)
...|+++...+..|..---.+..+|..-..-|+.+......
T Consensus 9 D~~Ld~L~~~v~~lk~la~~ig~El~~Qn~~Ld~l~~~~d~ 49 (66)
T 1n7s_D 9 DENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADS 49 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 45567777777777777777666655555555544433333
No 264
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=22.62 E-value=2.8e+02 Score=21.66 Aligned_cols=38 Identities=16% Similarity=0.171 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 125 IDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEK 162 (321)
Q Consensus 125 Ie~Lk~ele~~~~kk~~LEa~a~e~ekk~~el~~~le~ 162 (321)
...|.+.|.....++-.||.+.....-.+++|+..+.+
T Consensus 51 ~keLh~~I~~LEeEKYDlE~kv~kq~yEI~eL~~rV~d 88 (106)
T 1j1d_B 51 AKELWQTIYNLEAEKFDLQEKFKQQKYEINVLRNRIND 88 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHhhhHHHHHHHHHHHH
Confidence 33333333333333344444433333344444444433
No 265
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=22.49 E-value=3.5e+02 Score=22.86 Aligned_cols=119 Identities=12% Similarity=0.232 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------
Q 020809 44 KIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKK--------------------- 102 (321)
Q Consensus 44 ~~el~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~qk~--------------------- 102 (321)
...++.+..++.++.++--+.+.+-+.+-+.-+....+|.-+.-.|.....-|.-.+..
T Consensus 9 ~~~ve~v~~~L~e~h~qy~~ks~~yd~l~e~y~r~sqEiq~Kr~AieAF~E~ik~FeeQ~~~qer~~~~~~~~f~~e~~~ 88 (170)
T 3l4q_C 9 EDSVEAVGAQLKVYHQQYQDKSREYDQLYEEYTRTSQELQMKRTAIEAFNETIKIFEEQGQTQEKSSKEYLERFRREGNE 88 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSTTGGGSSSSSCCCS
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhcCH
Q ss_pred -hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 103 -ETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEK 162 (321)
Q Consensus 103 -~~~~~eeq~~~~~~RireL~k~Ie~Lk~ele~~~~kk~~LEa~a~e~ekk~~el~~~le~ 162 (321)
....+......++.|+.+|...-..|..+++.+.....+++.+.+++...+-.+....+.
T Consensus 89 ~E~~~l~~N~e~LksRL~~l~~sk~~L~e~L~~q~~~~relERemnsLKPeL~qL~K~rD~ 149 (170)
T 3l4q_C 89 KEMQRILLNSERLKSRIAEIHESRTKLEQELRAQASDNREIDKRMNSLKPDLMQLRKIRDQ 149 (170)
T ss_dssp SSTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
No 266
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=22.38 E-value=3.9e+02 Score=23.33 Aligned_cols=93 Identities=8% Similarity=0.129 Sum_probs=49.8
Q ss_pred ccCchhHHHHHHHHHHHHHHhHHHhhCc--chHHHHHHHHHHHHHhhccccchhHH----hhhhhhhhhhhhhHHHHHhc
Q 020809 207 SAWLPPWLAVHLLQCQSLIETHWNAHGK--PAMDVAIQKALEKKAQAGKWVQPHVE----TIKAKWIPAVKEQWVVFTTN 280 (321)
Q Consensus 207 g~~l~Pwla~~~~~~~~~~~~~~~~hg~--p~~~~~~~~~~~k~~~~~~~~~ph~~----~~~~k~~p~~~~~~~~~~~~ 280 (321)
|.|++---...+..+....+.|-...|. |.+-+.. =.|+.-+++ .|+.-+.+ -..-|...-..
T Consensus 136 ~~Yi~~Ls~i~Fs~I~~t~~~f~~~F~~~~~~~~S~l----------V~Wa~~eve~f~~l~~rqv~~-~~~l~~ecv~i 204 (235)
T 2d2s_A 136 TNYLTQLAVIRFQTIKKTVEDFQDIFKELGAKISSIL----------VDWCSDEVDNHFKLIDKQLLN-DEMLSPGSIKS 204 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHH----------HHHHHHHHHHHHHHHHHHTTC----CCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccHH----------HHHHHHHHHHHHHHHHHHccC-CccHHHHHHHH
Confidence 4566666666777888888888888886 4444332 134444433 44444433 11122233334
Q ss_pred cchhhHHHHhHhHHHHHhhhhhcCchhHHH
Q 020809 281 VEPHVQTLKTKTIEACEATKTAVTPHIIRV 310 (321)
Q Consensus 281 ~~p~~q~~~~~~~~~~~~~~~~~~ph~~k~ 310 (321)
+.+|...++..+.-+--..-..+.||++|+
T Consensus 205 ~~~~~~~L~~vGLd~~~~L~~ll~~~~~~~ 234 (235)
T 2d2s_A 205 SRKQIDGLKAVGLDFVYKLDEFIKKNSDKI 234 (235)
T ss_dssp HHHHHHGGGGGTCCCHHHHHHHHHTTGGGT
T ss_pred HHHHHHHHHHcCCChHHHHHHHHhhhHhhc
Confidence 445666666655544444445666777664
No 267
>2ynz_A General control protein GCN4, putative inner MEMB protein; membrane protein, DALL domain, DALL2, trimeric autotransport adhesin, TAA; 1.40A {Saccharomyces cerevisiae} PDB: 1uo2_A 1gcl_A 2ccn_A 1uo0_A 1unz_A 1uny_A 2bni_A* 1u9h_A*
Probab=22.28 E-value=3.4e+02 Score=22.62 Aligned_cols=50 Identities=24% Similarity=0.350 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHH
Q 020809 43 LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSL 92 (321)
Q Consensus 43 l~~el~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~L 92 (321)
++-+++++-++|=.++..|..+-.+|...+..+++.-..|..+...|..|
T Consensus 4 ~~~~~~~~~~~~~~~~~~i~~~GSQL~~tn~~Va~nt~~ia~vn~~i~~l 53 (154)
T 2ynz_A 4 IEDKIEEILSKIYHIENEIARIKKLIYETNQKVDQNTSAIADINTSITNL 53 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHhccchhhhhhhhhcc
Confidence 44566666677777777777776666666666666666665555544443
No 268
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=22.28 E-value=1.5e+02 Score=18.46 Aligned_cols=16 Identities=25% Similarity=0.345 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 020809 114 AHARADELEKQIDNLK 129 (321)
Q Consensus 114 ~~~RireL~k~Ie~Lk 129 (321)
+-.+..+|+.+|..|+
T Consensus 12 Ll~~n~~Le~EV~RLk 27 (33)
T 3m48_A 12 LLSKNWNLENEVARLK 27 (33)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHH
Confidence 3333334444444443
No 269
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=22.13 E-value=1.1e+02 Score=21.06 Aligned_cols=29 Identities=21% Similarity=0.240 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 71 KDEVVAQKEKAIQDKSERIVSLQKELSSL 99 (321)
Q Consensus 71 kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~ 99 (321)
.|.-|++....+..+..++..|..++..+
T Consensus 25 VD~FLd~v~~~~~~l~~e~~~L~~~~~~l 53 (57)
T 2wuj_A 25 VNEFLAQVRKDYEIVLRKKTELEAKVNEL 53 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555555555556655565555544
No 270
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=22.11 E-value=3.6e+02 Score=23.87 Aligned_cols=50 Identities=14% Similarity=0.193 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHH
Q 020809 43 LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSL 92 (321)
Q Consensus 43 l~~el~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~L 92 (321)
+...++.++.++..|++.++.+..+.++....|.+.-..+.++....+.+
T Consensus 169 La~R~~~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~~~~~~ 218 (228)
T 3q0x_A 169 LAFRLSEVKGTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLREQYDKH 218 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34456777777777777777777766666666666666666655555444
No 271
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=21.98 E-value=1.1e+02 Score=19.57 Aligned_cols=20 Identities=30% Similarity=0.624 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 020809 82 IQDKSERIVSLQKELSSLQK 101 (321)
Q Consensus 82 i~e~~~~I~~Lq~eI~~~qk 101 (321)
+++...+|..|++++.+++.
T Consensus 10 LeEtkeQi~~l~~kl~~Lke 29 (38)
T 2l5g_A 10 LEETKEQILKLEEKLLALQE 29 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666654
No 272
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=21.64 E-value=1.8e+02 Score=22.38 Aligned_cols=24 Identities=38% Similarity=0.559 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 111 VDKAHARADELEKQIDNLKKESEK 134 (321)
Q Consensus 111 ~~~~~~RireL~k~Ie~Lk~ele~ 134 (321)
--+++.++.-|..+|+.+.+.+..
T Consensus 51 WaKL~Rk~DKl~~ele~l~~~l~~ 74 (93)
T 3sjb_C 51 WTKNNRKLDSLDKEINNLKDEIQS 74 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444443333
No 273
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=21.52 E-value=2.7e+02 Score=21.22 Aligned_cols=23 Identities=13% Similarity=0.082 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 020809 72 DEVVAQKEKAIQDKSERIVSLQK 94 (321)
Q Consensus 72 d~~I~q~ek~i~e~~~~I~~Lq~ 94 (321)
+.+|.+--.++..+...+..|+.
T Consensus 42 E~ki~~Qi~Emq~Ir~tvyeLE~ 64 (92)
T 3vp9_A 42 DFKMNQQLAEMQQIRNTVYEREL 64 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444443
No 274
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=21.04 E-value=99 Score=28.91 Aligned_cols=13 Identities=23% Similarity=0.450 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHH
Q 020809 80 KAIQDKSERIVSL 92 (321)
Q Consensus 80 k~i~e~~~~I~~L 92 (321)
..|..++.+|..|
T Consensus 32 ~ki~~L~~~i~~l 44 (319)
T 1fzc_C 32 QKIVNLKEKVAQL 44 (319)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 275
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=20.83 E-value=2.9e+02 Score=21.26 Aligned_cols=12 Identities=42% Similarity=0.678 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q 020809 121 LEKQIDNLKKES 132 (321)
Q Consensus 121 L~k~Ie~Lk~el 132 (321)
|+..|..|+..+
T Consensus 57 lq~Ki~elkr~l 68 (96)
T 2ic9_A 57 LETKLGELKREL 68 (96)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 276
>2b9b_A Fusion glycoprotein F0; fusion protein, PRE-fusion conformation, viral protein; HET: NAG; 2.85A {Simian virus 5}
Probab=20.78 E-value=2.6e+02 Score=27.75 Aligned_cols=56 Identities=16% Similarity=0.345 Sum_probs=42.2
Q ss_pred CCchHHHHHHHHHHHHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 39 DSSPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQK 101 (321)
Q Consensus 39 ~~~~l~~el~qlk~ki~~Les~i~e~~~eLk~kd~~I~q~ek~i~e~~~~I~~Lq~eI~~~qk 101 (321)
+--++..+|++....+++.+..+++- +..++...-.++++-+++.+++++|..+++
T Consensus 424 ~plDISseL~~vn~sl~~a~~~I~~S-------n~~L~~v~~~~~~~~~~~~~~~~~~~~~~~ 479 (497)
T 2b9b_A 424 DPLDISQNLAAVNKSLSDALQHLAQS-------DTYLSAIEDKIEEILSKIYHIENEIARIKK 479 (497)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CccchHHHHHHHHHHHHHHHHHHHHH-------HHHHHHccchhHHHHhhhhhhhHHHHHHHH
Confidence 44455577777777777776666655 777777778888888999999999998854
No 277
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=20.76 E-value=4.1e+02 Score=22.89 Aligned_cols=23 Identities=13% Similarity=0.248 Sum_probs=13.1
Q ss_pred CCchHHHHHHHHHHHHHHHHHhH
Q 020809 39 DSSPLKIELDQLKSKIRSLESHI 61 (321)
Q Consensus 39 ~~~~l~~el~qlk~ki~~Les~i 61 (321)
+...++.++.+++..+...+..+
T Consensus 54 d~~~~~~~l~~a~a~l~~a~a~l 76 (277)
T 2f1m_A 54 DPATYQATYDSAKGDLAKAQAAA 76 (277)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666655544433
No 278
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=20.70 E-value=2.6e+02 Score=20.70 Aligned_cols=12 Identities=42% Similarity=0.678 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHH
Q 020809 121 LEKQIDNLKKES 132 (321)
Q Consensus 121 L~k~Ie~Lk~el 132 (321)
|+..|..|+..+
T Consensus 57 lq~Ki~elkrql 68 (78)
T 2ic6_A 57 LETKLGELKREL 68 (78)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333344444333
No 279
>2vs0_A Virulence factor ESXA; secreted, four helical bundle, cell invasion; 1.4A {Staphylococcus aureus} PDB: 2vrz_A
Probab=20.62 E-value=2.4e+02 Score=20.10 Aligned_cols=67 Identities=6% Similarity=0.153 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 76 AQKEKAIQDKSERIVSLQKELSSLQKK----ETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEAL 142 (321)
Q Consensus 76 ~q~ek~i~e~~~~I~~Lq~eI~~~qk~----~~~~~eeq~~~~~~RireL~k~Ie~Lk~ele~~~~kk~~L 142 (321)
........++...+..|.+.+..++.. ............+..++.+...|..+...+......-...
T Consensus 16 ~~~~~~~~~l~~~l~~L~~~~~~L~~~W~G~a~~af~~~~~~~~~~~~~~~~~L~~i~~~L~~~a~~y~~~ 86 (97)
T 2vs0_A 16 QSYGQGSDQIRQILSDLTRAQGEIAANWEGQAFSRFEEQFQQLSPKVEKFAQLLEEIKQQLNSTADAVQEQ 86 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444445555566666666666544 4566777777777777777777777777777666444333
No 280
>2xz3_A Maltose ABC transporter periplasmic protein, ENVE glycoprotein; viral protein, viral membrane fusion, hairpin, chimera; HET: MAL; 1.95A {Escherichia coli} PDB: 1mg1_A*
Probab=20.35 E-value=2.7e+02 Score=26.30 Aligned_cols=26 Identities=15% Similarity=0.086 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 74 VVAQKEKAIQDKSERIVSLQKELSSL 99 (321)
Q Consensus 74 ~I~q~ek~i~e~~~~I~~Lq~eI~~~ 99 (321)
-|.+.+..++++...|..|+..|.++
T Consensus 380 ~~~~~~~~~~~~~~~i~~~~~~~~~~ 405 (463)
T 2xz3_A 380 LIHVLEQDQQRLITAINQTHYNLLNV 405 (463)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555554
No 281
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=20.21 E-value=1.7e+02 Score=18.31 Aligned_cols=18 Identities=11% Similarity=0.351 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 020809 82 IQDKSERIVSLQKELSSL 99 (321)
Q Consensus 82 i~e~~~~I~~Lq~eI~~~ 99 (321)
++++-++-..|++++..+
T Consensus 10 vEel~~~~~~l~nEv~Rl 27 (34)
T 2r2v_A 10 LEEVASKLYHNANELARV 27 (34)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHH
Confidence 333333333444444333
No 282
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=20.17 E-value=1.1e+02 Score=29.42 Aligned_cols=64 Identities=28% Similarity=0.341 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020809 128 LKKESEKQQKEKEALEARAIEAEKKISDLSA---KLEKLQKINDEQKSKIRKTERALKVAEEEMMRA 191 (321)
Q Consensus 128 Lk~ele~~~~kk~~LEa~a~e~ekk~~el~~---~le~Lek~~~Eqk~~l~elE~~lq~~Eeei~kl 191 (321)
+..+..+...+.+.|.++++.+.+.+..+.. ..+.+.....+.+.++..++..+..+++++..+
T Consensus 35 ~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (425)
T 2dq3_A 35 LDKRRREIIKRLEALRSERNKLSKEIGKLKREGKDTTEIQNRVKELKEEIDRLEEELRKVEEELKNT 101 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTGGGSSCSCTTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444444332211 112233334445555666666666666665554
No 283
>3ibp_A Chromosome partition protein MUKB; structural maintenance of chromosomes, SMC, condensin, chromosome segregation, hinge, dimerization domain; 3.10A {Escherichia coli}
Probab=20.06 E-value=5.2e+02 Score=23.87 Aligned_cols=21 Identities=14% Similarity=0.120 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 020809 171 KSKIRKTERALKVAEEEMMRA 191 (321)
Q Consensus 171 k~~l~elE~~lq~~Eeei~kl 191 (321)
...-+++......++.+|.++
T Consensus 82 ~~~Rd~~a~~k~~Le~~ierL 102 (302)
T 3ibp_A 82 IVERDEVGARKNAVDEEIERL 102 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333344455555555555554
Done!