BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020810
(321 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 44/89 (49%), Positives = 54/89 (60%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
+H A G E +K L AGAD + +D GRT LH A G ++ ++LLEAGA+V+A D
Sbjct: 6 LHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKD 65
Query: 293 KNKNTALHYAAGYGRKECVALLLENGAAV 321
KN T LH AA G E V LLLE GA V
Sbjct: 66 KNGRTPLHLAARNGHLEVVKLLLEAGADV 94
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 43/87 (49%), Positives = 53/87 (60%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
+H A G E +K L AGAD + +D GRT LH A G ++ ++LLEAGA+V+A D
Sbjct: 39 LHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKD 98
Query: 293 KNKNTALHYAAGYGRKECVALLLENGA 319
KN T LH AA G E V LLLE GA
Sbjct: 99 KNGRTPLHLAARNGHLEVVKLLLEAGA 125
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 39/60 (65%)
Query: 262 GRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAV 321
GRT LH A G ++ ++LLEAGA+V+A DKN T LH AA G E V LLLE GA V
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 71.2 bits (173), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 55/89 (61%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
+H+ A G E +K ++ GAD + +DS+GRT LH+A G + ++L+ GA+V+A D
Sbjct: 41 LHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKD 100
Query: 293 KNKNTALHYAAGYGRKECVALLLENGAAV 321
+ T LHYAA G KE V LL+ GA V
Sbjct: 101 SDGRTPLHYAAKEGHKEIVKLLISKGADV 129
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 51/82 (62%)
Query: 240 GDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTAL 299
G+ + +K+ + GAD + DS+GRT LH+A G + ++L+ GA+V+A D + T L
Sbjct: 15 GNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPL 74
Query: 300 HYAAGYGRKECVALLLENGAAV 321
HYAA G KE V LL+ GA V
Sbjct: 75 HYAAKEGHKEIVKLLISKGADV 96
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 50/87 (57%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
+H+ A G E +K ++ GAD + +DS+GRT LH+A G + ++L+ GA+V+ D
Sbjct: 74 LHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNTSD 133
Query: 293 KNKNTALHYAAGYGRKECVALLLENGA 319
+ T L A +G +E V LL + G
Sbjct: 134 SDGRTPLDLAREHGNEEIVKLLEKQGG 160
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 70.9 bits (172), Expect = 1e-12, Method: Composition-based stats.
Identities = 43/87 (49%), Positives = 53/87 (60%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
+H A G E +K L AGAD + +D GRT LH A G ++ ++LLEAGA+V+A D
Sbjct: 6 LHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKD 65
Query: 293 KNKNTALHYAAGYGRKECVALLLENGA 319
KN T LH AA G E V LLLE GA
Sbjct: 66 KNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 57.0 bits (136), Expect = 1e-08, Method: Composition-based stats.
Identities = 33/60 (55%), Positives = 39/60 (65%)
Query: 262 GRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAV 321
GRT LH A G ++ ++LLEAGA+V+A DKN T LH AA G E V LLLE GA V
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/87 (44%), Positives = 53/87 (60%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
+H+ A G E +K L+ GAD + +DS+GRT LH+A G + ++LL GA+ +A D
Sbjct: 41 LHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKD 100
Query: 293 KNKNTALHYAAGYGRKECVALLLENGA 319
+ T LHYAA G KE V LLL GA
Sbjct: 101 SDGRTPLHYAAENGHKEIVKLLLSKGA 127
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 50/83 (60%)
Query: 237 ASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKN 296
A G+ + +K+ L GAD + DS+GRT LH+A G + ++LL GA+ +A D +
Sbjct: 12 AENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGR 71
Query: 297 TALHYAAGYGRKECVALLLENGA 319
T LHYAA G KE V LLL GA
Sbjct: 72 TPLHYAAENGHKEIVKLLLSKGA 94
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 50/89 (56%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
+H+ A G E +K L+ GAD + +DS+GRT LH+A G + ++LL GA+ + D
Sbjct: 74 LHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNTSD 133
Query: 293 KNKNTALHYAAGYGRKECVALLLENGAAV 321
+ T L A +G +E V LL + G +
Sbjct: 134 SDGRTPLDLAREHGNEEIVKLLEKQGGWL 162
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 54/89 (60%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
+HH A G E +K ++ GAD + +DS+GRT LH A G + ++L+ GA+V+A D
Sbjct: 41 LHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKD 100
Query: 293 KNKNTALHYAAGYGRKECVALLLENGAAV 321
+ T LH+AA G KE V LL+ GA V
Sbjct: 101 SDGRTPLHHAAENGHKEVVKLLISKGADV 129
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 50/82 (60%)
Query: 240 GDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTAL 299
G+ + +K+ + GAD + DS+GRT LH A G + ++L+ GA+V+A D + T L
Sbjct: 15 GNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPL 74
Query: 300 HYAAGYGRKECVALLLENGAAV 321
H+AA G KE V LL+ GA V
Sbjct: 75 HHAAENGHKEVVKLLISKGADV 96
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 49/87 (56%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
+HH A G E +K ++ GAD + +DS+GRT LH A G + ++L+ GA+V+ D
Sbjct: 74 LHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSD 133
Query: 293 KNKNTALHYAAGYGRKECVALLLENGA 319
+ T L A +G +E V LL + G
Sbjct: 134 SDGRTPLDLAREHGNEEVVKLLEKQGG 160
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 53/85 (62%)
Query: 237 ASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKN 296
A G + ++ +A GAD + ED G+T LH A G ++ ++LL+ GA+V+A DK +
Sbjct: 22 ARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMGD 81
Query: 297 TALHYAAGYGRKECVALLLENGAAV 321
T LH AA YG E V +LL+NGA V
Sbjct: 82 TPLHLAALYGHLEIVEVLLKNGADV 106
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 49/89 (55%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
+H A G E ++ L GAD + D G T LH A YG ++ ++LL+ GA+V+A D
Sbjct: 51 LHLAAIKGHLEIVEVLLKHGADVNAADKMGDTPLHLAALYGHLEIVEVLLKNGADVNATD 110
Query: 293 KNKNTALHYAAGYGRKECVALLLENGAAV 321
T LH AA G E V +LL+ GA V
Sbjct: 111 TYGFTPLHLAADAGHLEIVEVLLKYGADV 139
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 43/82 (52%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
+H A G E ++ L GAD + D+ G T LH A G ++ ++LL+ GA+V+A D
Sbjct: 84 LHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGADVNAQD 143
Query: 293 KNKNTALHYAAGYGRKECVALL 314
K TA + G ++ +L
Sbjct: 144 KFGKTAFDISIDNGNEDLAEIL 165
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 53/89 (59%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
+H A G E ++ L GAD D D G T LH A +G ++ ++LL+ GA+V+A+D
Sbjct: 51 LHLAAYSGHLEIVEVLLKHGADVDASDVFGYTPLHLAAYWGHLEIVEVLLKNGADVNAMD 110
Query: 293 KNKNTALHYAAGYGRKECVALLLENGAAV 321
+ T LH AA +G E V +LL++GA V
Sbjct: 111 SDGMTPLHLAAKWGYLEIVEVLLKHGADV 139
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 45/82 (54%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
+H A G E ++ L GAD + DS+G T LH A +G ++ ++LL+ GA+V+A D
Sbjct: 84 LHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNAQD 143
Query: 293 KNKNTALHYAAGYGRKECVALL 314
K TA + G ++ +L
Sbjct: 144 KFGKTAFDISIDNGNEDLAEIL 165
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/95 (40%), Positives = 56/95 (58%)
Query: 227 NEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGA 286
N+ + +H AS G E ++ L GAD + D G T LH A G ++ ++LL+ GA
Sbjct: 45 NDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTGITPLHLAAATGHLEIVEVLLKHGA 104
Query: 287 NVDALDKNKNTALHYAAGYGRKECVALLLENGAAV 321
+V+A D + +T LH AA YG E V +LL++GA V
Sbjct: 105 DVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADV 139
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 46/82 (56%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
+H A+ G E ++ L GAD + D++G T LH A YG ++ ++LL+ GA+V+A D
Sbjct: 84 LHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVNAQD 143
Query: 293 KNKNTALHYAAGYGRKECVALL 314
K TA + G ++ +L
Sbjct: 144 KFGKTAFDISIDNGNEDLAEIL 165
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 49/85 (57%)
Query: 237 ASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKN 296
A G + ++ +A GAD + D GRT LH A G ++ ++LL GA+V+A+D N
Sbjct: 10 ARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNGT 69
Query: 297 TALHYAAGYGRKECVALLLENGAAV 321
T LH AA G E V +LL+ GA V
Sbjct: 70 TPLHLAASLGHLEIVEVLLKYGADV 94
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 53/89 (59%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
+H A+VG E ++ L GAD + D+ G T LH A G ++ ++LL+ GA+V+A D
Sbjct: 39 LHMAAAVGHLEIVEVLLRNGADVNAVDTNGTTPLHLAASLGHLEIVEVLLKYGADVNAKD 98
Query: 293 KNKNTALHYAAGYGRKECVALLLENGAAV 321
T L+ AA +G E V +LL++GA V
Sbjct: 99 ATGITPLYLAAYWGHLEIVEVLLKHGADV 127
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 47/82 (57%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
+H AS+G E ++ L GAD + +D+ G T L+ A +G ++ ++LL+ GA+V+A D
Sbjct: 72 LHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGADVNAQD 131
Query: 293 KNKNTALHYAAGYGRKECVALL 314
K TA + G ++ +L
Sbjct: 132 KFGKTAFDISIDIGNEDLAEIL 153
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 50/87 (57%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
+H A G E +K L+ GAD + +DS+G+T LH A G + ++LL GA+ +A D
Sbjct: 41 LHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKD 100
Query: 293 KNKNTALHYAAGYGRKECVALLLENGA 319
+ T LH AA G KE V LLL GA
Sbjct: 101 SDGKTPLHLAAENGHKEVVKLLLSQGA 127
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 48/83 (57%)
Query: 237 ASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKN 296
A G+ + +K+ L GAD + DS+G+T LH A G + ++LL GA+ +A D +
Sbjct: 12 AENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGK 71
Query: 297 TALHYAAGYGRKECVALLLENGA 319
T LH AA G KE V LLL GA
Sbjct: 72 TPLHLAAENGHKEVVKLLLSQGA 94
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 47/87 (54%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
+H A G E +K L+ GAD + +DS+G+T LH A G + ++LL GA+ + D
Sbjct: 74 LHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNTSD 133
Query: 293 KNKNTALHYAAGYGRKECVALLLENGA 319
+ T L A +G +E V LL + G
Sbjct: 134 SDGRTPLDLAREHGNEEVVKLLEKQGG 160
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 54/89 (60%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
+H A G E ++ L AGAD + +D +G T LH A G ++ ++LL+AGA+V+A D
Sbjct: 39 LHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 98
Query: 293 KNKNTALHYAAGYGRKECVALLLENGAAV 321
K+ T LH AA G E V +LL+ GA V
Sbjct: 99 KDGYTPLHLAAREGHLEIVEVLLKAGADV 127
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 52/85 (61%)
Query: 237 ASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKN 296
A G + ++ +A GAD + +D +G T LH A G ++ ++LL+AGA+V+A DK+
Sbjct: 10 ARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGY 69
Query: 297 TALHYAAGYGRKECVALLLENGAAV 321
T LH AA G E V +LL+ GA V
Sbjct: 70 TPLHLAAREGHLEIVEVLLKAGADV 94
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 45/82 (54%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
+H A G E ++ L AGAD + +D +G T LH A G ++ ++LL+AGA+V+A D
Sbjct: 72 LHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQD 131
Query: 293 KNKNTALHYAAGYGRKECVALL 314
K T A G ++ +L
Sbjct: 132 KFGKTPFDLAIREGHEDIAEVL 153
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 54/89 (60%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
+H A G E ++ L AGAD + +D +G T LH A G ++ ++LL+AGA+V+A D
Sbjct: 39 LHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 98
Query: 293 KNKNTALHYAAGYGRKECVALLLENGAAV 321
K+ T LH AA G E V +LL+ GA V
Sbjct: 99 KDGYTPLHLAAREGHLEIVEVLLKAGADV 127
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 52/85 (61%)
Query: 237 ASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKN 296
A G + ++ +A GAD + +D +G T LH A G ++ ++LL+AGA+V+A DK+
Sbjct: 10 ARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGY 69
Query: 297 TALHYAAGYGRKECVALLLENGAAV 321
T LH AA G E V +LL+ GA V
Sbjct: 70 TPLHLAAREGHLEIVEVLLKAGADV 94
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 45/82 (54%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
+H A G E ++ L AGAD + +D +G T LH A G ++ ++LL+AGA+V+A D
Sbjct: 72 LHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQD 131
Query: 293 KNKNTALHYAAGYGRKECVALL 314
K T A G ++ +L
Sbjct: 132 KFGKTPFDLAIDNGNEDIAEVL 153
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 52/85 (61%)
Query: 237 ASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKN 296
A G + ++ +A GAD + D+ G T LH A YG ++ ++LL+ GA+V+A+D +
Sbjct: 22 ARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXGS 81
Query: 297 TALHYAAGYGRKECVALLLENGAAV 321
T LH AA G E V +LL++GA V
Sbjct: 82 TPLHLAALIGHLEIVEVLLKHGADV 106
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 52/89 (58%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
+H A+ G E ++ L GAD + D G T LH A G ++ ++LL+ GA+V+A+D
Sbjct: 51 LHLAATYGHLEIVEVLLKHGADVNAIDIXGSTPLHLAALIGHLEIVEVLLKHGADVNAVD 110
Query: 293 KNKNTALHYAAGYGRKECVALLLENGAAV 321
+T LH AA G E V +LL++GA V
Sbjct: 111 TWGDTPLHLAAIMGHLEIVEVLLKHGADV 139
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 44/82 (53%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
+H A +G E ++ L GAD + D+ G T LH A G ++ ++LL+ GA+V+A D
Sbjct: 84 LHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQD 143
Query: 293 KNKNTALHYAAGYGRKECVALL 314
K TA + G ++ +L
Sbjct: 144 KFGKTAFDISIDNGNEDLAEIL 165
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 54/89 (60%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
+H A G E ++ L AGAD + +D +G T LH A G ++ ++LL+AGA+V+A D
Sbjct: 51 LHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 110
Query: 293 KNKNTALHYAAGYGRKECVALLLENGAAV 321
K+ T LH AA G E V +LL+ GA V
Sbjct: 111 KDGYTPLHLAAREGHLEIVEVLLKAGADV 139
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 52/85 (61%)
Query: 237 ASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKN 296
A G + ++ +A GAD + +D +G T LH A G ++ ++LL+AGA+V+A DK+
Sbjct: 22 ARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGY 81
Query: 297 TALHYAAGYGRKECVALLLENGAAV 321
T LH AA G E V +LL+ GA V
Sbjct: 82 TPLHLAAREGHLEIVEVLLKAGADV 106
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 46/82 (56%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
+H A G E ++ L AGAD + +D +G T LH A G ++ ++LL+AGA+V+A D
Sbjct: 84 LHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQD 143
Query: 293 KNKNTALHYAAGYGRKECVALL 314
K TA + G ++ +L
Sbjct: 144 KFGKTAFDISIDNGNEDLAEIL 165
>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
pdb|3DEP|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
Length = 183
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/69 (50%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Query: 254 DKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD-KNKNTALHYAAGYGRKECVA 312
D D D GRTAL F G G KC ++L EAGA++D D + TALH AAGY R E V
Sbjct: 68 DVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVE 127
Query: 313 LLLENGAAV 321
L+E GA +
Sbjct: 128 ALVELGADI 136
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 236 TASVGDAEGLKNALAAGADKDEEDSEG-RTALHFACGYGEVKCAQILLEAGANVDALDKN 294
A +G + ++ AGAD D D G TALH A GY + + L+E GA+++ D+
Sbjct: 83 VAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDER 142
Query: 295 KNTALHYA 302
TAL A
Sbjct: 143 GLTALELA 150
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 52/85 (61%)
Query: 237 ASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKN 296
A G + ++ +A GAD + D+ G T LH A YG ++ ++LL+ GA+V+A+D +
Sbjct: 22 ARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMGS 81
Query: 297 TALHYAAGYGRKECVALLLENGAAV 321
T LH AA G E V +LL++GA V
Sbjct: 82 TPLHLAALIGHLEIVEVLLKHGADV 106
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 52/89 (58%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
+H A+ G E ++ L GAD + D G T LH A G ++ ++LL+ GA+V+A+D
Sbjct: 51 LHLAATYGHLEIVEVLLKHGADVNAIDIMGSTPLHLAALIGHLEIVEVLLKHGADVNAVD 110
Query: 293 KNKNTALHYAAGYGRKECVALLLENGAAV 321
+T LH AA G E V +LL++GA V
Sbjct: 111 TWGDTPLHLAAIMGHLEIVEVLLKHGADV 139
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 44/82 (53%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
+H A +G E ++ L GAD + D+ G T LH A G ++ ++LL+ GA+V+A D
Sbjct: 84 LHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQD 143
Query: 293 KNKNTALHYAAGYGRKECVALL 314
K TA + G ++ +L
Sbjct: 144 KFGKTAFDISIDNGNEDLAEIL 165
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 52/89 (58%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
+H A G E ++ L GAD + +DS G T LH A G ++ ++LL+ GA+V+A D
Sbjct: 51 LHLAAYFGHLEIVEVLLKNGADVNADDSLGVTPLHLAADRGHLEVVEVLLKNGADVNAND 110
Query: 293 KNKNTALHYAAGYGRKECVALLLENGAAV 321
N T LH AA G E V +LL++GA V
Sbjct: 111 HNGFTPLHLAANIGHLEIVEVLLKHGADV 139
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 49/85 (57%)
Query: 237 ASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKN 296
A G + ++ +A GAD + D G T LH A +G ++ ++LL+ GA+V+A D
Sbjct: 22 ARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLGV 81
Query: 297 TALHYAAGYGRKECVALLLENGAAV 321
T LH AA G E V +LL+NGA V
Sbjct: 82 TPLHLAADRGHLEVVEVLLKNGADV 106
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 4/92 (4%)
Query: 227 NEDESI----VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILL 282
N D+S+ +H A G E ++ L GAD + D G T LH A G ++ ++LL
Sbjct: 74 NADDSLGVTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLL 133
Query: 283 EAGANVDALDKNKNTALHYAAGYGRKECVALL 314
+ GA+V+A DK TA + G ++ +L
Sbjct: 134 KHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 60.8 bits (146), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 52/89 (58%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
+H A G E ++ L GAD + +DS G T LH A G ++ ++LL+ GA+V+A D
Sbjct: 51 LHLAAHFGHLEIVEVLLKNGADVNAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVNASD 110
Query: 293 KNKNTALHYAAGYGRKECVALLLENGAAV 321
+ T LH AA G E V +LL+NGA V
Sbjct: 111 SHGFTPLHLAAKRGHLEIVEVLLKNGADV 139
Score = 57.8 bits (138), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 49/85 (57%)
Query: 237 ASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKN 296
A G + ++ +A GAD + D G T LH A +G ++ ++LL+ GA+V+A D
Sbjct: 22 ARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLGV 81
Query: 297 TALHYAAGYGRKECVALLLENGAAV 321
T LH AA G E V +LL+NGA V
Sbjct: 82 TPLHLAARRGHLEIVEVLLKNGADV 106
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 43/82 (52%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
+H A G E ++ L GAD + DS G T LH A G ++ ++LL+ GA+V+A D
Sbjct: 84 LHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVNAQD 143
Query: 293 KNKNTALHYAAGYGRKECVALL 314
K TA + G ++ +L
Sbjct: 144 KFGKTAFDISIDNGNEDLAEIL 165
>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43
Length = 244
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/69 (50%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Query: 254 DKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD-KNKNTALHYAAGYGRKECVA 312
D D D GRTAL F G G KC ++L EAGA++D D + TALH AAGY R E V
Sbjct: 69 DVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVE 128
Query: 313 LLLENGAAV 321
L+E GA +
Sbjct: 129 ALVELGADI 137
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 236 TASVGDAEGLKNALAAGADKDEEDSEG-RTALHFACGYGEVKCAQILLEAGANVDALDKN 294
A +G + ++ AGAD D D G TALH A GY + + L+E GA+++ D+
Sbjct: 84 VAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDER 143
Query: 295 KNTALHYA 302
TAL A
Sbjct: 144 GLTALELA 151
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 51/85 (60%)
Query: 237 ASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKN 296
A G + ++ +A GAD + D G T LH A +G ++ ++LL+ GA+V+A D +
Sbjct: 22 ARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLGS 81
Query: 297 TALHYAAGYGRKECVALLLENGAAV 321
T LH AA +G E V +LL+NGA V
Sbjct: 82 TPLHLAAHFGHLEIVEVLLKNGADV 106
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 51/89 (57%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
+H A G E ++ L GAD + D+ G T LH A +G ++ ++LL+ GA+V+A D
Sbjct: 51 LHLAAYWGHLEIVEVLLKNGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKD 110
Query: 293 KNKNTALHYAAGYGRKECVALLLENGAAV 321
N T LH AA G E V +LL+ GA V
Sbjct: 111 DNGITPLHLAANRGHLEIVEVLLKYGADV 139
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 43/82 (52%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
+H A G E ++ L GAD + +D G T LH A G ++ ++LL+ GA+V+A D
Sbjct: 84 LHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVNAQD 143
Query: 293 KNKNTALHYAAGYGRKECVALL 314
K TA + G ++ +L
Sbjct: 144 KFGKTAFDISINNGNEDLAEIL 165
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 52/85 (61%)
Query: 237 ASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKN 296
A G + ++ +A GAD + D +G T LH A Y ++ ++LL+ GA+V+A D + +
Sbjct: 22 ARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDGS 81
Query: 297 TALHYAAGYGRKECVALLLENGAAV 321
T LH AA +G E V +LL++GA V
Sbjct: 82 TPLHLAALFGHLEIVEVLLKHGADV 106
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 38/66 (57%)
Query: 249 LAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRK 308
L GAD + D++G T LH A +G ++ ++LL+ GA+V+A DK TA + G +
Sbjct: 67 LKHGADVNAHDNDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNE 126
Query: 309 ECVALL 314
+ +L
Sbjct: 127 DLAEIL 132
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 52/85 (61%)
Query: 237 ASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKN 296
A G + ++ +A GAD + ED+ G T LH A G ++ ++LL+ GA+V+ALD + +
Sbjct: 22 ARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSGS 81
Query: 297 TALHYAAGYGRKECVALLLENGAAV 321
T LH AA G E V +LL+ GA V
Sbjct: 82 TPLHLAAKRGHLEIVEVLLKYGADV 106
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 50/89 (56%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
+H A VG E ++ L GAD + D G T LH A G ++ ++LL+ GA+V+A D
Sbjct: 51 LHLAARVGHLEIVEVLLKNGADVNALDFSGSTPLHLAAKRGHLEIVEVLLKYGADVNADD 110
Query: 293 KNKNTALHYAAGYGRKECVALLLENGAAV 321
+T LH AA G E V +LL+ GA V
Sbjct: 111 TIGSTPLHLAADTGHLEIVEVLLKYGADV 139
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 44/82 (53%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
+H A G E ++ L GAD + +D+ G T LH A G ++ ++LL+ GA+V+A D
Sbjct: 84 LHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGADVNAQD 143
Query: 293 KNKNTALHYAAGYGRKECVALL 314
K TA + G ++ +L
Sbjct: 144 KFGKTAFDISIDNGNEDLAEIL 165
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 52/89 (58%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
+H A +G E ++ L GAD + D++G T LH A G ++ ++LL+ GA+V+A D
Sbjct: 51 LHLAAWIGHPEIVEVLLKHGADVNARDTDGWTPLHLAADNGHLEIVEVLLKYGADVNAQD 110
Query: 293 KNKNTALHYAAGYGRKECVALLLENGAAV 321
T LH AA G E V +LL++GA V
Sbjct: 111 AYGLTPLHLAADRGHLEIVEVLLKHGADV 139
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 44/82 (53%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
+H A G E ++ L GAD + +D+ G T LH A G ++ ++LL+ GA+V+A D
Sbjct: 84 LHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVNAQD 143
Query: 293 KNKNTALHYAAGYGRKECVALL 314
K TA + G ++ +L
Sbjct: 144 KFGKTAFDISIDNGNEDLAEIL 165
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 51/85 (60%)
Query: 237 ASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKN 296
A G + ++ +A GAD + ED+ G T LH A G ++ ++LL+ GA+V+A+D
Sbjct: 22 ARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGM 81
Query: 297 TALHYAAGYGRKECVALLLENGAAV 321
T L AA +G E V +LL+NGA V
Sbjct: 82 TPLRLAALFGHLEIVEVLLKNGADV 106
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 51/89 (57%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
+H A G E ++ L GAD + D G T L A +G ++ ++LL+ GA+V+A D
Sbjct: 51 LHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNAND 110
Query: 293 KNKNTALHYAAGYGRKECVALLLENGAAV 321
+T LH AA +G E V +LL+NGA V
Sbjct: 111 MEGHTPLHLAAMFGHLEIVEVLLKNGADV 139
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 42/78 (53%)
Query: 237 ASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKN 296
A G E ++ L GAD + D EG T LH A +G ++ ++LL+ GA+V+A DK
Sbjct: 88 ALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGK 147
Query: 297 TALHYAAGYGRKECVALL 314
TA + G ++ +L
Sbjct: 148 TAFDISIDNGNEDLAEIL 165
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 53/89 (59%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
+H A+ G E ++ L GAD + DS G T LH A G ++ ++LL+ GA+V+A D
Sbjct: 43 LHLAAANGQLEIVEVLLKNGADVNASDSAGITPLHLAAYDGHLEIVEVLLKHGADVNAYD 102
Query: 293 KNKNTALHYAAGYGRKECVALLLENGAAV 321
+ T LH AA G+ E V +LL++GA V
Sbjct: 103 RAGWTPLHLAALSGQLEIVEVLLKHGADV 131
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 43/82 (52%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
+H A G E ++ L GAD + D G T LH A G+++ ++LL+ GA+V+A D
Sbjct: 76 LHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGADVNAQD 135
Query: 293 KNKNTALHYAAGYGRKECVALL 314
TA + G+++ +L
Sbjct: 136 ALGLTAFDISINQGQEDLAEIL 157
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/104 (39%), Positives = 55/104 (52%), Gaps = 1/104 (0%)
Query: 218 GADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKC 277
GAD V N + +H A G E ++ L GAD D D G T LH A G ++
Sbjct: 37 GAD-VNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYGFTPLHLAAMTGHLEI 95
Query: 278 AQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAV 321
++LL+ GA+V+A D +T LH AA G E V +LL+ GA V
Sbjct: 96 VEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADV 139
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 36/67 (53%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
+H A G E ++ L GAD + D G T LH A G ++ ++LL+ GA+V+A D
Sbjct: 84 LHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVNAQD 143
Query: 293 KNKNTAL 299
K TA
Sbjct: 144 KFGKTAF 150
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 260 SEGR--TALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLEN 317
S+GR T LH A GY V+ Q+LL+ GA+V A DK LH A YG E LLL++
Sbjct: 54 SDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKH 113
Query: 318 GAAV 321
GA V
Sbjct: 114 GACV 117
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 46/87 (52%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
+H A ++ L GAD +D G LH AC YG + ++LL+ GA V+A+D
Sbjct: 62 LHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMD 121
Query: 293 KNKNTALHYAAGYGRKECVALLLENGA 319
+ T LH AA R E +LLL +GA
Sbjct: 122 LWQFTPLHEAASKNRVEVCSLLLSHGA 148
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 26/48 (54%)
Query: 274 EVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAV 321
E K +L N A D K+T LH AAGY R V LLL++GA V
Sbjct: 37 EEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADV 84
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 37/71 (52%)
Query: 249 LAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRK 308
L GA+ +E++ + T LH A ++L + GA ++ALD TALH AA G
Sbjct: 234 LRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHL 293
Query: 309 ECVALLLENGA 319
+ LLL G+
Sbjct: 294 QTCRLLLSYGS 304
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Query: 241 DAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVK---CAQILLEAGANVDALDKNKNT 297
D +K LA ++ TALH A K A++LL GANV+ +K+ T
Sbjct: 190 DLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMT 249
Query: 298 ALHYAAGYGRKECVALLLENGA 319
LH AA + + +L ++GA
Sbjct: 250 PLHVAAERAHNDVMEVLHKHGA 271
Score = 27.7 bits (60), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 252 GADKDEEDSEGRTALHFACGYGEVKCAQILLEAGAN 287
GA + DS G+TALH A G ++ ++LL G++
Sbjct: 270 GAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSD 305
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 45/87 (51%), Gaps = 3/87 (3%)
Query: 237 ASVGDAEGLKNALAAGADKDEEDSEGR--TALHFACGYGEVKCAQILLEAGANVDALDKN 294
A GD E +K L + D EGR T LHFA GY V + LL+ GA+V A DK
Sbjct: 16 AKAGDVETVKK-LCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKG 74
Query: 295 KNTALHYAAGYGRKECVALLLENGAAV 321
LH A YG E LL+++GA V
Sbjct: 75 GLVPLHNACSYGHYEVAELLVKHGAVV 101
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 46/87 (52%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
+H A ++ L GAD +D G LH AC YG + A++L++ GA V+ D
Sbjct: 46 LHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVAD 105
Query: 293 KNKNTALHYAAGYGRKECVALLLENGA 319
K T LH AA G+ E LLL++GA
Sbjct: 106 LWKFTPLHEAAAKGKYEICKLLLQHGA 132
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 49/85 (57%)
Query: 237 ASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKN 296
A G + ++ +A GAD + ED G T LH A ++ ++LL+ GA+V+A+D
Sbjct: 22 ARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIGE 81
Query: 297 TALHYAAGYGRKECVALLLENGAAV 321
T LH A YG E V +LL++GA V
Sbjct: 82 TPLHLVAMYGHLEIVEVLLKHGADV 106
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 235 HTASVGD-AEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDK 293
H A++ D E ++ L GAD + D+ G T LH YG ++ ++LL+ GA+V+A DK
Sbjct: 52 HLAAMNDHLEIVEVLLKNGADVNAIDAIGETPLHLVAMYGHLEIVEVLLKHGADVNAQDK 111
Query: 294 NKNTALHYAAGYGRKECVALL 314
TA + G ++ +L
Sbjct: 112 FGKTAFDISIDNGNEDLAEIL 132
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 45/87 (51%), Gaps = 3/87 (3%)
Query: 237 ASVGDAEGLKNALAAGADKDEEDSEGR--TALHFACGYGEVKCAQILLEAGANVDALDKN 294
A GD E +K L + D EGR T LHFA GY V + LL+ GA+V A DK
Sbjct: 18 AKAGDVETVKK-LCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKG 76
Query: 295 KNTALHYAAGYGRKECVALLLENGAAV 321
LH A YG E LL+++GA V
Sbjct: 77 GLVPLHNACSYGHYEVAELLVKHGAVV 103
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 46/87 (52%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
+H A ++ L GAD +D G LH AC YG + A++L++ GA V+ D
Sbjct: 48 LHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVAD 107
Query: 293 KNKNTALHYAAGYGRKECVALLLENGA 319
K T LH AA G+ E LLL++GA
Sbjct: 108 LWKFTPLHEAAAKGKYEICKLLLQHGA 134
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 45/87 (51%), Gaps = 3/87 (3%)
Query: 237 ASVGDAEGLKNALAAGADKDEEDSEGR--TALHFACGYGEVKCAQILLEAGANVDALDKN 294
A GD E +K L + D EGR T LHFA GY V + LL+ GA+V A DK
Sbjct: 20 AKAGDVETVKK-LCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKG 78
Query: 295 KNTALHYAAGYGRKECVALLLENGAAV 321
LH A YG E LL+++GA V
Sbjct: 79 GLVPLHNACSYGHYEVAELLVKHGAVV 105
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 46/87 (52%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
+H A ++ L GAD +D G LH AC YG + A++L++ GA V+ D
Sbjct: 50 LHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVAD 109
Query: 293 KNKNTALHYAAGYGRKECVALLLENGA 319
K T LH AA G+ E LLL++GA
Sbjct: 110 LWKFTPLHEAAAKGKYEICKLLLQHGA 136
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 46/89 (51%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
+H A G + L AG +D RT LH A G ++LL+ GA+V+A D
Sbjct: 38 LHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKD 97
Query: 293 KNKNTALHYAAGYGRKECVALLLENGAAV 321
K TALH+A + +E V LL++ GA V
Sbjct: 98 MLKMTALHWATEHNHQEVVELLIKYGADV 126
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 33/63 (52%)
Query: 259 DSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENG 318
D G + LH A YG ++LL AG + DA K T LH AA G V +LL++G
Sbjct: 31 DWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHG 90
Query: 319 AAV 321
A V
Sbjct: 91 ADV 93
Score = 35.8 bits (81), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 43/86 (50%)
Query: 229 DESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANV 288
D + +H AS G A ++ L GAD + +D TALH+A + + ++L++ GA+V
Sbjct: 67 DRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADV 126
Query: 289 DALDKNKNTALHYAAGYGRKECVALL 314
K TA + G ++ +L
Sbjct: 127 HTQSKFCKTAFDISIDNGNEDLAEIL 152
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 50/91 (54%)
Query: 230 ESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVD 289
E+++H + GD ++ L G+D + +D G T LH AC +G +K ++LL+ A V+
Sbjct: 11 ETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVN 70
Query: 290 ALDKNKNTALHYAAGYGRKECVALLLENGAA 320
++ LH AA G + V LLL GA+
Sbjct: 71 TTGYQNDSPLHDAAKNGHVDIVKLLLSYGAS 101
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%)
Query: 259 DSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENG 318
+ G T LH A G++ + LL+ G++ + D T LH A +G + V LLL++
Sbjct: 7 NHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHK 66
Query: 319 AAV 321
A V
Sbjct: 67 ALV 69
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 47/89 (52%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
+H+ A G AE +K L+ GAD + +G T LH A G + ++LL GA+V+A
Sbjct: 13 LHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARS 72
Query: 293 KNKNTALHYAAGYGRKECVALLLENGAAV 321
K+ NT H A G E V LL GA V
Sbjct: 73 KDGNTPEHLAKKNGHHEIVKLLDAKGADV 101
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 34/61 (55%)
Query: 261 EGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAA 320
+G T LH A G + + LL GA+V+A K+ NT LH AA G E V LLL GA
Sbjct: 8 DGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD 67
Query: 321 V 321
V
Sbjct: 68 V 68
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 30/58 (51%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDA 290
+H A G AE +K LA GAD + +G T H A G + ++L GA+V+A
Sbjct: 46 LHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNA 103
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 49/92 (53%)
Query: 228 EDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGAN 287
+ + +H S G E ++ L G +++D G + LH A G + + LL GA+
Sbjct: 39 DSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLVKGAH 98
Query: 288 VDALDKNKNTALHYAAGYGRKECVALLLENGA 319
V+A+++N T LHYAA R E +LLE GA
Sbjct: 99 VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGA 130
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 43/83 (51%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
+H AS G E +K L GA + + G T LH+A + A +LLE GAN DA D
Sbjct: 77 LHIAASAGRDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKD 136
Query: 293 KNKNTALHYAAGYGRKECVALLL 315
TA+H AA G + V +LL
Sbjct: 137 HYDATAMHRAAAKGNLKMVHILL 159
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 34/63 (53%)
Query: 259 DSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENG 318
D + RTALH+AC G + + LL+ G V+ D + LH AA GR E V LL G
Sbjct: 37 DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLVKG 96
Query: 319 AAV 321
A V
Sbjct: 97 AHV 99
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 41/89 (46%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
+H+ AS E L GA+ D +D TA+H A G +K ILL A+ + D
Sbjct: 110 LHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQD 169
Query: 293 KNKNTALHYAAGYGRKECVALLLENGAAV 321
NT LH A R E L+ GA++
Sbjct: 170 TEGNTPLHLACDEERVEEAKFLVTQGASI 198
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 40/76 (52%)
Query: 229 DESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANV 288
D + +H A+ G+ + + L A + +D+EG T LH AC V+ A+ L+ GA++
Sbjct: 139 DATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASI 198
Query: 289 DALDKNKNTALHYAAG 304
+K + T L A G
Sbjct: 199 YIENKEEKTPLQVAKG 214
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 51/93 (54%)
Query: 229 DESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANV 288
D S +H A G L+N ++ G + ++ + LH AC G + C +ILL+ GA V
Sbjct: 59 DWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQV 118
Query: 289 DALDKNKNTALHYAAGYGRKECVALLLENGAAV 321
+ + + +T L A G +CV LLL++GA+V
Sbjct: 119 NGVTADWHTPLFNACVSGSWDCVNLLLQHGASV 151
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 231 SIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDA 290
S +H A G E + + +A G + D + S T L+ AC + C + LLE+GA+V+
Sbjct: 159 SPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ 218
Query: 291 LDKNKNTALHYAAGYGRKECVALLLENGA 319
K +++ LH +E LL++ GA
Sbjct: 219 -GKGQDSPLHAVVRTASEELACLLMDFGA 246
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 34/65 (52%)
Query: 257 EEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLE 316
+ +S+ + +H A G V+C L+ G N+D + T L+ A ++ CV LLE
Sbjct: 152 QPESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLE 211
Query: 317 NGAAV 321
+GA V
Sbjct: 212 SGADV 216
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 42/73 (57%)
Query: 249 LAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRK 308
+A GAD + D G T LH A G ++ ++LL+ GA+V+A D T LH AA G
Sbjct: 34 MANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAATVGHL 93
Query: 309 ECVALLLENGAAV 321
E V +LLE GA V
Sbjct: 94 EIVEVLLEYGADV 106
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 44/82 (53%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
+H A G E ++ L GAD + DS GRT LH A G ++ ++LLE GA+V+A D
Sbjct: 51 LHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAATVGHLEIVEVLLEYGADVNAQD 110
Query: 293 KNKNTALHYAAGYGRKECVALL 314
K TA + G ++ +L
Sbjct: 111 KFGKTAFDISIDNGNEDLAEIL 132
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 49/92 (53%)
Query: 228 EDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGAN 287
+ + +H S G E ++ L G +++D G + LH A G + + LL GA+
Sbjct: 39 DSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAH 98
Query: 288 VDALDKNKNTALHYAAGYGRKECVALLLENGA 319
V+A+++N T LHYAA R E +LLE GA
Sbjct: 99 VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGA 130
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 43/83 (51%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
+H AS G E +K L GA + + G T LH+A + A +LLE GAN DA D
Sbjct: 77 LHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKD 136
Query: 293 KNKNTALHYAAGYGRKECVALLL 315
TA+H AA G + V +LL
Sbjct: 137 HYDATAMHRAAAKGNLKMVHILL 159
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 41/89 (46%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
+H+ AS E L GA+ D +D TA+H A G +K ILL A+ + D
Sbjct: 110 LHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQD 169
Query: 293 KNKNTALHYAAGYGRKECVALLLENGAAV 321
NT LH A R E L+ GA++
Sbjct: 170 TEGNTPLHLACDEERVEEAKFLVTQGASI 198
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 40/76 (52%)
Query: 229 DESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANV 288
D + +H A+ G+ + + L A + +D+EG T LH AC V+ A+ L+ GA++
Sbjct: 139 DATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASI 198
Query: 289 DALDKNKNTALHYAAG 304
+K + T L A G
Sbjct: 199 YIENKEEKTPLQVAKG 214
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 51/93 (54%)
Query: 229 DESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANV 288
D S +H A G L+N ++ G + ++ + LH AC G + C +ILL+ GA V
Sbjct: 3 DWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQV 62
Query: 289 DALDKNKNTALHYAAGYGRKECVALLLENGAAV 321
+ + + +T L A G +CV LLL++GA+V
Sbjct: 63 NGVTADWHTPLFNACVSGSWDCVNLLLQHGASV 95
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 231 SIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDA 290
S +H A G E + + +A G + D + S T L+ AC + C + LLE+GA+V+
Sbjct: 103 SPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ 162
Query: 291 LDKNKNTALHYAAGYGRKECVALLLENGA 319
K +++ LH A +E LL++ GA
Sbjct: 163 -GKGQDSPLHAVARTASEELACLLMDFGA 190
Score = 36.2 bits (82), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 39/85 (45%)
Query: 237 ASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKN 296
A V + N L + +S+ + +H A G V+C L+ G N+D +
Sbjct: 76 ACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLG 135
Query: 297 TALHYAAGYGRKECVALLLENGAAV 321
T L+ A ++ CV LLE+GA V
Sbjct: 136 TPLYLACENQQRACVKKLLESGADV 160
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 48/85 (56%)
Query: 237 ASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKN 296
A G + ++ +A GAD + D G T LH A G ++ ++LL+ GA+V+A D
Sbjct: 22 ARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYGA 81
Query: 297 TALHYAAGYGRKECVALLLENGAAV 321
T LH AA G E V +LL++GA V
Sbjct: 82 TPLHLAADNGHLEIVEVLLKHGADV 106
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 49/89 (55%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
+H A G E ++ L GAD + D+ G T LH A G ++ ++LL+ GA+V+A D
Sbjct: 51 LHLAAKTGHLEIVEVLLKYGADVNAWDNYGATPLHLAADNGHLEIVEVLLKHGADVNAKD 110
Query: 293 KNKNTALHYAAGYGRKECVALLLENGAAV 321
T LH AA G E V +LL+ GA V
Sbjct: 111 YEGFTPLHLAAYDGHLEIVEVLLKYGADV 139
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 44/82 (53%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
+H A G E ++ L GAD + +D EG T LH A G ++ ++LL+ GA+V+A D
Sbjct: 84 LHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVNAQD 143
Query: 293 KNKNTALHYAAGYGRKECVALL 314
K TA + G ++ +L
Sbjct: 144 KFGKTAFDISIDNGNEDLAEIL 165
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 42/73 (57%)
Query: 249 LAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRK 308
+A GAD + D G T LH A G ++ ++LL+ GA+V+A D T LH AA G
Sbjct: 34 MANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAATVGHL 93
Query: 309 ECVALLLENGAAV 321
E V +LLE GA V
Sbjct: 94 EIVEVLLEYGADV 106
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 43/82 (52%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
+H A G E ++ L GAD + D GRT LH A G ++ ++LLE GA+V+A D
Sbjct: 51 LHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQD 110
Query: 293 KNKNTALHYAAGYGRKECVALL 314
K TA + G ++ +L
Sbjct: 111 KFGKTAFDISIDNGNEDLAEIL 132
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 48/92 (52%)
Query: 228 EDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGAN 287
+ + +H S G E ++ L G +++D G + LH A G + + LL GA
Sbjct: 39 DSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQ 98
Query: 288 VDALDKNKNTALHYAAGYGRKECVALLLENGA 319
V+A+++N T LHYAA R E +LLE GA
Sbjct: 99 VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGA 130
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 47/93 (50%), Gaps = 5/93 (5%)
Query: 232 IVHHTASVGDAEGLKNALAAGADKD---EEDSEGRTALHFACGYGEVKCAQILLEAGANV 288
+V + A G E LK ++ A DK D + RTALH+AC G + + LL+ G V
Sbjct: 9 MVCNLAYSGKLEELKESILA--DKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV 66
Query: 289 DALDKNKNTALHYAAGYGRKECVALLLENGAAV 321
+ D + LH AA GR E V LL GA V
Sbjct: 67 NDKDDAGWSPLHIAASAGRDEIVKALLGKGAQV 99
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 44/83 (53%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
+H AS G E +K L GA + + G T LH+A + A +LLE GAN DA D
Sbjct: 77 LHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKD 136
Query: 293 KNKNTALHYAAGYGRKECVALLL 315
+ TA+H AA G + + +LL
Sbjct: 137 HYEATAMHRAAAKGNLKMIHILL 159
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 42/89 (47%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
+H+ AS E L GA+ D +D TA+H A G +K ILL A+ + D
Sbjct: 110 LHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQD 169
Query: 293 KNKNTALHYAAGYGRKECVALLLENGAAV 321
NT LH A R E LL+ GA++
Sbjct: 170 TEGNTPLHLACDEERVEEAKLLVSQGASI 198
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 39/72 (54%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
+H A+ G+ + + L A + +D+EG T LH AC V+ A++L+ GA++ +
Sbjct: 143 MHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIEN 202
Query: 293 KNKNTALHYAAG 304
K + T L A G
Sbjct: 203 KEEKTPLQVAKG 214
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 48/92 (52%)
Query: 228 EDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGAN 287
+ + +H S G E ++ L G +++D G + LH A G + + LL GA
Sbjct: 40 DSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQ 99
Query: 288 VDALDKNKNTALHYAAGYGRKECVALLLENGA 319
V+A+++N T LHYAA R E +LLE GA
Sbjct: 100 VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGA 131
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 47/93 (50%), Gaps = 5/93 (5%)
Query: 232 IVHHTASVGDAEGLKNALAAGADKD---EEDSEGRTALHFACGYGEVKCAQILLEAGANV 288
+V + A G E LK ++ A DK D + RTALH+AC G + + LL+ G V
Sbjct: 10 MVCNLAYSGKLEELKESILA--DKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV 67
Query: 289 DALDKNKNTALHYAAGYGRKECVALLLENGAAV 321
+ D + LH AA GR E V LL GA V
Sbjct: 68 NDKDDAGWSPLHIAASAGRDEIVKALLGKGAQV 100
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 44/83 (53%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
+H AS G E +K L GA + + G T LH+A + A +LLE GAN DA D
Sbjct: 78 LHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKD 137
Query: 293 KNKNTALHYAAGYGRKECVALLL 315
+ TA+H AA G + + +LL
Sbjct: 138 HYEATAMHRAAAKGNLKMIHILL 160
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 42/89 (47%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
+H+ AS E L GA+ D +D TA+H A G +K ILL A+ + D
Sbjct: 111 LHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQD 170
Query: 293 KNKNTALHYAAGYGRKECVALLLENGAAV 321
NT LH A R E LL+ GA++
Sbjct: 171 TEGNTPLHLACDEERVEEAKLLVSQGASI 199
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 39/72 (54%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
+H A+ G+ + + L A + +D+EG T LH AC V+ A++L+ GA++ +
Sbjct: 144 MHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIEN 203
Query: 293 KNKNTALHYAAG 304
K + T L A G
Sbjct: 204 KEEKTPLQVAKG 215
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 42/73 (57%)
Query: 249 LAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRK 308
+A GAD + D G T LH A G ++ ++LL+ GA+V+A D T LH AA G
Sbjct: 34 MANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAATVGHL 93
Query: 309 ECVALLLENGAAV 321
E V +LLE GA V
Sbjct: 94 EIVEVLLEYGADV 106
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 43/82 (52%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
+H A G E ++ L GAD + D GRT LH A G ++ ++LLE GA+V+A D
Sbjct: 51 LHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQD 110
Query: 293 KNKNTALHYAAGYGRKECVALL 314
K TA + G ++ +L
Sbjct: 111 KFGKTAFDISIDNGNEDLAEIL 132
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 48/89 (53%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
+H + G E ++ L AD + D G T LH A G ++ ++LL+ GA+V+A+D
Sbjct: 51 LHLVVNNGHLEIIEVLLKYAADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMD 110
Query: 293 KNKNTALHYAAGYGRKECVALLLENGAAV 321
T LH AA G E V +LL+ GA V
Sbjct: 111 YQGYTPLHLAAEDGHLEIVEVLLKYGADV 139
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 47/85 (55%)
Query: 237 ASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKN 296
A G + ++ +A GAD + D G T LH G ++ ++LL+ A+V+A DK+
Sbjct: 22 ARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASDKSGW 81
Query: 297 TALHYAAGYGRKECVALLLENGAAV 321
T LH AA G E V +LL+ GA V
Sbjct: 82 TPLHLAAYRGHLEIVEVLLKYGADV 106
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 43/82 (52%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
+H A G E ++ L GAD + D +G T LH A G ++ ++LL+ GA+V+A D
Sbjct: 84 LHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNAQD 143
Query: 293 KNKNTALHYAAGYGRKECVALL 314
K TA + G ++ +L
Sbjct: 144 KFGKTAFDISIDNGNEDLAEIL 165
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 49/85 (57%)
Query: 237 ASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKN 296
A G + ++ +A GAD + D +G T LH A G ++ ++LL+ GA+V+A D
Sbjct: 22 ARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFGI 81
Query: 297 TALHYAAGYGRKECVALLLENGAAV 321
T LH AA G E V +LL++GA V
Sbjct: 82 TPLHLAAIRGHLEIVEVLLKHGADV 106
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 45/82 (54%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
+H A +G E ++ L GAD + ED+ G T LH A G ++ ++LL+ GA+V+A D
Sbjct: 51 LHLAAQLGHLEIVEVLLKYGADVNAEDNFGITPLHLAAIRGHLEIVEVLLKHGADVNAQD 110
Query: 293 KNKNTALHYAAGYGRKECVALL 314
K TA + G ++ +L
Sbjct: 111 KFGKTAFDISIDNGNEDLAEIL 132
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 50/85 (58%)
Query: 237 ASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKN 296
A G + ++ +A GAD + +D G T L+ A +G ++ ++LL+ GA+V+A+D
Sbjct: 22 ARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGF 81
Query: 297 TALHYAAGYGRKECVALLLENGAAV 321
T LH AA G E +LL++GA V
Sbjct: 82 TPLHLAAFIGHLEIAEVLLKHGADV 106
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 42/75 (56%)
Query: 240 GDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTAL 299
G E ++ L GAD + D+ G T LH A G ++ A++LL+ GA+V+A DK TA
Sbjct: 58 GHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAF 117
Query: 300 HYAAGYGRKECVALL 314
+ G G ++ +L
Sbjct: 118 DISIGNGNEDLAEIL 132
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 25/49 (51%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQIL 281
+H A +G E + L GAD + +D G+TA + G G A+IL
Sbjct: 84 LHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEIL 132
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With
V-1
Length = 123
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 44/80 (55%)
Query: 240 GDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTAL 299
GD + +K+ +A G D + GR LH+A G+++ + LL GA+++A DK+ T L
Sbjct: 18 GDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPL 77
Query: 300 HYAAGYGRKECVALLLENGA 319
A G CV LLL GA
Sbjct: 78 LSAVYEGHVSCVKLLLSKGA 97
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 27/55 (49%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGAN 287
+H+ A G E L+ L GAD + D T L A G V C ++LL GA+
Sbjct: 44 LHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGAD 98
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 44/80 (55%)
Query: 240 GDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTAL 299
GD + +K+ +A G D + GR LH+A G+++ + LL GA+++A DK+ T L
Sbjct: 13 GDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPL 72
Query: 300 HYAAGYGRKECVALLLENGA 319
A G CV LLL GA
Sbjct: 73 LSAVYEGHVSCVKLLLSKGA 92
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 27/55 (49%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGAN 287
+H+ A G E L+ L GAD + D T L A G V C ++LL GA+
Sbjct: 39 LHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGAD 93
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 37/69 (53%)
Query: 252 GADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECV 311
G D G T LH A YG +K + LL+ A+V+A K + LH AA G + V
Sbjct: 301 GVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIV 360
Query: 312 ALLLENGAA 320
LLL+NGA+
Sbjct: 361 TLLLKNGAS 369
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 235 HTAS-VGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDK 293
H AS +G +KN L GA + + + T LH A G + A+ LL+ A V+A K
Sbjct: 19 HVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAK 78
Query: 294 NKNTALHYAAGYGRKECVALLLENGA 319
+ T LH AA G V LLLEN A
Sbjct: 79 DDQTPLHCAARIGHTNMVKLLLENNA 104
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 51/104 (49%), Gaps = 2/104 (1%)
Query: 218 GADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKC 277
G+ AE V + + +H A G AE + L+ A+ + + G T LH G V
Sbjct: 236 GSANAESV--QGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPV 293
Query: 278 AQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAV 321
A +L++ G VDA + T LH A+ YG + V LL++ A V
Sbjct: 294 ADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADV 337
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 44/92 (47%)
Query: 228 EDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGAN 287
+D++ +H A +G +K L A+ + + G T LH A G V+ LLE A+
Sbjct: 79 DDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEAS 138
Query: 288 VDALDKNKNTALHYAAGYGRKECVALLLENGA 319
+ K T LH AA YG+ LLLE A
Sbjct: 139 QACMTKKGFTPLHVAAKYGKVRVAELLLERDA 170
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 51/106 (48%), Gaps = 3/106 (2%)
Query: 215 DNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGE 274
+NA + A G+ +H A G E + L A + +G T LH A YG+
Sbjct: 102 NNANPNLATTAGHTP---LHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGK 158
Query: 275 VKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAA 320
V+ A++LLE A+ +A KN T LH A + + V LLL G +
Sbjct: 159 VRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGS 204
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 41/91 (45%)
Query: 230 ESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVD 289
E+ +H A G E K L A + + + +T LH A G ++LLE AN +
Sbjct: 48 ETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPN 107
Query: 290 ALDKNKNTALHYAAGYGRKECVALLLENGAA 320
+T LH AA G E V LLE A+
Sbjct: 108 LATTAGHTPLHIAAREGHVETVLALLEKEAS 138
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 39/87 (44%), Gaps = 4/87 (4%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
VHH + + +K L G G T LH A +V+ A+ LL+ G + +A
Sbjct: 187 VHHN----NLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAES 242
Query: 293 KNKNTALHYAAGYGRKECVALLLENGA 319
T LH AA G E VALLL A
Sbjct: 243 VQGVTPLHLAAQEGHAEMVALLLSKQA 269
Score = 35.0 bits (79), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 39/89 (43%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
+H A E ++ L G + E +G T LH A G + +LL AN + +
Sbjct: 216 LHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGN 275
Query: 293 KNKNTALHYAAGYGRKECVALLLENGAAV 321
K+ T LH A G +L+++G V
Sbjct: 276 KSGLTPLHLVAQEGHVPVADVLIKHGVMV 304
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 28/58 (48%)
Query: 264 TALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAV 321
T LH A G + + LL+ GA+ + + T LH AA G E LL+N A V
Sbjct: 16 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKV 73
Score = 28.1 bits (61), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 27/59 (45%)
Query: 262 GRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAA 320
G T LH A + + ++LL G + + N T LH AA + E LL+ G +
Sbjct: 179 GLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGS 237
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 40/72 (55%)
Query: 250 AAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKE 309
A GAD + D G T LH A G ++ ++LL+ GA+V+A T LH AA E
Sbjct: 35 ANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTGRTPLHLAAWADHLE 94
Query: 310 CVALLLENGAAV 321
V +LL++GA V
Sbjct: 95 IVEVLLKHGADV 106
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 43/82 (52%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
+H A +G E ++ L GAD + + GRT LH A ++ ++LL+ GA+V+A D
Sbjct: 51 LHLAAMLGHLEIVEVLLKNGADVNATGNTGRTPLHLAAWADHLEIVEVLLKHGADVNAQD 110
Query: 293 KNKNTALHYAAGYGRKECVALL 314
K TA + G ++ +L
Sbjct: 111 KFGKTAFDISIDNGNEDLAEIL 132
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 231 SIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGA-NVD 289
+++H A G + L+ L AD + ED+EG LH A G ++ + L++ A NV
Sbjct: 72 AVIHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVG 131
Query: 290 ALDKNKNTALHYAAGYGRKECVALLLENGA 319
+ +TA A YGR E V+L+ NGA
Sbjct: 132 HRNHKGDTACDLARLYGRNEVVSLMQANGA 161
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 41/82 (50%)
Query: 239 VGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTA 298
+G+ E + L GA+ D +D G +H A G++ Q LLE A+V+ D N
Sbjct: 47 LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVNIEDNEGNLP 106
Query: 299 LHYAAGYGRKECVALLLENGAA 320
LH AA G V L+++ A+
Sbjct: 107 LHLAAKEGHLRVVEFLVKHTAS 128
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 46/95 (48%), Gaps = 5/95 (5%)
Query: 222 AEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQIL 281
AE GNE S A+ GD E L + L + + ++ GRTAL G + A+ L
Sbjct: 2 AEPWGNELAS----AAARGDLEQLTSLLQNNVNVNAQNGFGRTALQ-VMKLGNPEIARRL 56
Query: 282 LEAGANVDALDKNKNTALHYAAGYGRKECVALLLE 316
L GAN D D+ +H AA G+ + + LLE
Sbjct: 57 LLRGANPDLKDRTGFAVIHDAARAGQLDTLQTLLE 91
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 53/98 (54%), Gaps = 1/98 (1%)
Query: 225 VGNEDESIVHHTASV-GDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLE 283
V ++D S H A++ G A+ + L GA+ +++ LH AC G + + LL+
Sbjct: 81 VTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLD 140
Query: 284 AGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAV 321
+ A + D + NT L YA G E VALLL++GA++
Sbjct: 141 SNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASI 178
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 56/107 (52%), Gaps = 7/107 (6%)
Query: 216 NAGADEAEEVGNEDESI-VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGE 274
NAGA N D+++ +H G + +K L + A +++D G T L +AC G
Sbjct: 111 NAGAR------NADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGH 164
Query: 275 VKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAV 321
+ +LL+ GA+++A + NTALH A V LLL +GA+V
Sbjct: 165 HELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASV 211
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 34/70 (48%)
Query: 250 AAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKE 309
A+G + +G + LH A +G +LL+ GAN A + ++ LH A G +
Sbjct: 74 ASGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQ 133
Query: 310 CVALLLENGA 319
V LL++ A
Sbjct: 134 VVKCLLDSNA 143
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 34/65 (52%)
Query: 235 HTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKN 294
+ S G E + L GA + +++G TALH A V ++LL GA+V L+K
Sbjct: 158 YACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKR 217
Query: 295 KNTAL 299
+ TA+
Sbjct: 218 QRTAV 222
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 233 VHHTASVGDAEGLKNALAAGAD-KDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDAL 291
+H A+ G+ + LK L G + ++ D G T L +A +GE++ + LLE GA+ L
Sbjct: 6 IHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHIL 65
Query: 292 DKNKNTALHYAAGYGRKECVALLLEN 317
K + +AL A+ G + V LLLE
Sbjct: 66 AKERESALSLASTGGYTDIVGLLLER 91
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 37/83 (44%)
Query: 237 ASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKN 296
++ G+ E ++ L GAD E +AL A G +LLE +++ D N
Sbjct: 44 SAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGG 103
Query: 297 TALHYAAGYGRKECVALLLENGA 319
T L YA +CV LL GA
Sbjct: 104 TPLLYAVRGNHVKCVEALLARGA 126
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 52/104 (50%), Gaps = 4/104 (3%)
Query: 217 AGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVK 276
A D + GN +++H A G + L+ L AD + ED+EG LH A G ++
Sbjct: 61 ANPDLKDRTGN---AVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLR 117
Query: 277 CAQILLEAGA-NVDALDKNKNTALHYAAGYGRKECVALLLENGA 319
+ L++ A NV + +TA A YGR E V+L+ NGA
Sbjct: 118 VVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 40/82 (48%)
Query: 239 VGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTA 298
+G+ E + L GA+ D +D G +H A G + Q LLE A+V+ D N
Sbjct: 47 LGNPEIARRLLLRGANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLP 106
Query: 299 LHYAAGYGRKECVALLLENGAA 320
LH AA G V L+++ A+
Sbjct: 107 LHLAAKEGHLRVVEFLVKHTAS 128
Score = 34.7 bits (78), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 46/95 (48%), Gaps = 5/95 (5%)
Query: 222 AEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQIL 281
AE GNE S A+ GD E L + L + + ++ GRTAL G + A+ L
Sbjct: 2 AEPWGNELAS----AAARGDLEQLTSLLQNNVNVNAQNGFGRTALQ-VMKLGNPEIARRL 56
Query: 282 LEAGANVDALDKNKNTALHYAAGYGRKECVALLLE 316
L GAN D D+ N +H AA G + + LLE
Sbjct: 57 LLRGANPDLKDRTGNAVIHDAARAGFLDTLQTLLE 91
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 233 VHHTASVGDAEGLKNALAAGAD-KDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDAL 291
+H A+ G+ + LK L G + ++ D G T L +A +GE++ + LLE GA+ L
Sbjct: 6 IHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHIL 65
Query: 292 DKNKNTALHYAAGYGRKECVALLLEN 317
K + +AL A+ G + V LLLE
Sbjct: 66 AKERESALSLASTGGYTDIVGLLLER 91
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 37/83 (44%)
Query: 237 ASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKN 296
++ G+ E ++ L GAD E +AL A G +LLE +++ D N
Sbjct: 44 SAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGG 103
Query: 297 TALHYAAGYGRKECVALLLENGA 319
T L YA +CV LL GA
Sbjct: 104 TPLLYAVHGNHVKCVEALLARGA 126
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 231 SIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGA-NVD 289
+++H A G + L+ L AD + ED+EG LH A G ++ + L++ A NV
Sbjct: 72 AVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVG 131
Query: 290 ALDKNKNTALHYAAGYGRKECVALLLENGA 319
+ +TA A YGR E V+L+ NGA
Sbjct: 132 HRNHKGDTACDLARLYGRNEVVSLMQANGA 161
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 40/82 (48%)
Query: 239 VGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTA 298
+G+ E + L GA+ D +D G +H A G + Q LLE A+V+ D N
Sbjct: 47 LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLP 106
Query: 299 LHYAAGYGRKECVALLLENGAA 320
LH AA G V L+++ A+
Sbjct: 107 LHLAAKEGHLRVVEFLVKHTAS 128
Score = 31.6 bits (70), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 45/95 (47%), Gaps = 5/95 (5%)
Query: 222 AEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQIL 281
AE GNE S A+ GD E L + L + + ++ GRTAL G + A+ L
Sbjct: 2 AEPWGNELAS----AAARGDLEQLTSLLQNNVNVNAQNGFGRTALQ-VMKLGNPEIARRL 56
Query: 282 LEAGANVDALDKNKNTALHYAAGYGRKECVALLLE 316
L GAN D D+ +H AA G + + LLE
Sbjct: 57 LLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLE 91
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 231 SIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGA-NVD 289
+++H A G + L+ L AD + ED+EG LH A G ++ + L++ A NV
Sbjct: 72 AVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVG 131
Query: 290 ALDKNKNTALHYAAGYGRKECVALLLENGA 319
+ +TA A YGR E V+L+ NGA
Sbjct: 132 HRNHKGDTACDLARLYGRNEVVSLMQANGA 161
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 40/82 (48%)
Query: 239 VGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTA 298
+G+ E + L GA+ D +D G +H A G + Q LLE A+V+ D N
Sbjct: 47 LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLP 106
Query: 299 LHYAAGYGRKECVALLLENGAA 320
LH AA G V L+++ A+
Sbjct: 107 LHLAAKEGHLRVVEFLVKHTAS 128
Score = 31.6 bits (70), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 45/95 (47%), Gaps = 5/95 (5%)
Query: 222 AEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQIL 281
AE GNE S A+ GD E L + L + + ++ GRTAL G + A+ L
Sbjct: 2 AEPWGNELAS----AAARGDLEQLTSLLQNNVNVNAQNGFGRTALQ-VMKLGNPEIARRL 56
Query: 282 LEAGANVDALDKNKNTALHYAAGYGRKECVALLLE 316
L GAN D D+ +H AA G + + LLE
Sbjct: 57 LLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLE 91
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 231 SIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGA-NVD 289
+++H A G + L+ L AD + ED+EG LH A G ++ + L++ A NV
Sbjct: 72 AVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVG 131
Query: 290 ALDKNKNTALHYAAGYGRKECVALLLENGA 319
+ +TA A YGR E V+L+ NGA
Sbjct: 132 HRNHKGDTACDLARLYGRNEVVSLMQANGA 161
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 40/82 (48%)
Query: 239 VGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTA 298
+G+ E + L GA+ D +D G +H A G + Q LLE A+V+ D N
Sbjct: 47 LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLP 106
Query: 299 LHYAAGYGRKECVALLLENGAA 320
LH AA G V L+++ A+
Sbjct: 107 LHLAAKEGHLRVVEFLVKHTAS 128
Score = 34.7 bits (78), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 48/100 (48%), Gaps = 5/100 (5%)
Query: 222 AEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQIL 281
AE GNE S A+ GD E L + L + + ++ GRTAL G + A+ L
Sbjct: 2 AEPWGNELAS----AAARGDLEQLTSLLQNNVNVNAQNGFGRTALQ-VMKLGNPEIARRL 56
Query: 282 LEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAV 321
L GAN D D+ +H AA G + + LLEN A V
Sbjct: 57 LLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADV 96
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 47/83 (56%), Gaps = 3/83 (3%)
Query: 239 VGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTA 298
+G AE L L+ G++ + +D G+T L ++ +G + + LLE GANV+ + T
Sbjct: 81 LGIAEKL---LSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETP 137
Query: 299 LHYAAGYGRKECVALLLENGAAV 321
L A+ YGR E V LLE GA +
Sbjct: 138 LIVASKYGRSEIVKKLLELGADI 160
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 36/68 (52%)
Query: 249 LAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRK 308
L GA+ ++ + EG T L A YG + + LLE GA++ A D TA A +GR+
Sbjct: 121 LEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQ 180
Query: 309 ECVALLLE 316
E + + E
Sbjct: 181 EVIKIFTE 188
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 243 EGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILL-EAGANVDALDKNKNTALHY 301
+G K A KD E +GRTALH+A + L+ E G+N D D++ T +
Sbjct: 260 KGAKVDYDGAARKDSEKYKGRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXL 319
Query: 302 AAGYGRKECVALLLENGAAV 321
AA GR E V L++ GA+V
Sbjct: 320 AAQEGRIEVVXYLIQQGASV 339
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 233 VHHTASVGDAEGLKNALA-AGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDAL 291
+H+ A V + +K + G++KD++D +G+T + A G ++ L++ GA+V+A+
Sbjct: 283 LHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQQGASVEAV 342
Query: 292 DKNKNTALHYAAGYGRKECVALL 314
D +TA A V +
Sbjct: 343 DATDHTARQLAQANNHHNIVDIF 365
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 8/83 (9%)
Query: 229 DESIVHHTASVGDAEG--------LKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQI 280
+ +++H AS AE K +AAGAD + D + T L A +
Sbjct: 125 NRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAXDCDENTPLXLAVLARRRRLVAY 184
Query: 281 LLEAGANVDALDKNKNTALHYAA 303
L +AGA+ +K++ +ALH AA
Sbjct: 185 LXKAGADPTIYNKSERSALHQAA 207
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 8/65 (12%)
Query: 263 RTALHFACGYGE--------VKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALL 314
RT LH+ V A+ + AGA+V+A D ++NT L A R+ VA L
Sbjct: 126 RTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAXDCDENTPLXLAVLARRRRLVAYL 185
Query: 315 LENGA 319
+ GA
Sbjct: 186 XKAGA 190
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 45/94 (47%)
Query: 228 EDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGAN 287
+D ++ S GD E + L GAD + + +G TALH AC V + L+E GAN
Sbjct: 39 DDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGAN 98
Query: 288 VDALDKNKNTALHYAAGYGRKECVALLLENGAAV 321
++ D LH AA G + L+ GA V
Sbjct: 99 INQPDNEGWIPLHAAASCGYLDIAEYLISQGAHV 132
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 34/56 (60%)
Query: 262 GRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLEN 317
G TALH A G + ++L++A +V+ D + T LH AA +G++E +L+EN
Sbjct: 199 GGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVEN 254
Score = 32.0 bits (71), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 235 HTASVGD-AEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDK 293
H A + D + +K + GA+ ++ D+EG LH A G + A+ L+ GA+V A++
Sbjct: 78 HQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNS 137
Query: 294 NKNTAL 299
+T L
Sbjct: 138 EGDTPL 143
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 43/77 (55%)
Query: 245 LKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAG 304
+K L+ G+D + D+E LH+A G V A+ILL A ++ A++ + ++ LH AA
Sbjct: 127 VKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAAR 186
Query: 305 YGRKECVALLLENGAAV 321
R +CV L L + V
Sbjct: 187 ENRYDCVVLFLSRDSDV 203
Score = 41.2 bits (95), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 42/89 (47%)
Query: 230 ESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVD 289
S +H A G + + AGA+ D + RT L A ++ + L++AGA VD
Sbjct: 12 RSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVD 71
Query: 290 ALDKNKNTALHYAAGYGRKECVALLLENG 318
D +T LH AA G E V LL NG
Sbjct: 72 PKDAEGSTCLHLAAKKGHYEVVQYLLSNG 100
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 33/64 (51%)
Query: 258 EDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLEN 317
E R+ LH A G V +L++AGAN+D +++ T L AA E V L++
Sbjct: 7 EHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKA 66
Query: 318 GAAV 321
GA V
Sbjct: 67 GALV 70
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 39/68 (57%)
Query: 254 DKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVAL 313
D ++ D G + LH+AC G ++L+ GA ++ +++ +T LH AA +G ++ V
Sbjct: 31 DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQK 90
Query: 314 LLENGAAV 321
LL+ A +
Sbjct: 91 LLQYKADI 98
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 57/123 (46%), Gaps = 7/123 (5%)
Query: 199 GEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEE 258
G A+ + + D T + N G D S +H G + ++ + GA +
Sbjct: 16 GNAVAVRLWLDNTENDLNQGDDHGF-------SPLHWACREGRSAVVEMLIMRGARINVM 68
Query: 259 DSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENG 318
+ T LH A +G Q LL+ A+++A++++ N LHYA +G+ + L+ NG
Sbjct: 69 NRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANG 128
Query: 319 AAV 321
A V
Sbjct: 129 ALV 131
Score = 35.8 bits (81), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 35/65 (53%)
Query: 229 DESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANV 288
D++ +H AS G + ++ L AD + + G LH+AC +G+ + A+ L+ GA V
Sbjct: 72 DDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALV 131
Query: 289 DALDK 293
+K
Sbjct: 132 SICNK 136
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 52/106 (49%), Gaps = 3/106 (2%)
Query: 218 GADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGE-VK 276
GAD + + E S +H A G + +A G D D D G T L +A V
Sbjct: 99 GADPSL-IDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVD 157
Query: 277 CAQILLEAGANVDALDK-NKNTALHYAAGYGRKECVALLLENGAAV 321
++LL +V+ DK +KNTALH+A G ++LLLE GA V
Sbjct: 158 PTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANV 203
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Query: 240 GDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKN-TA 298
G E + + AG D + D E T LH+A + + + GA VD L + N T
Sbjct: 20 GIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTP 79
Query: 299 LHYAAGYGRKECVALLLENGA 319
LH+A G V L++ GA
Sbjct: 80 LHWATRQGHLSMVVQLMKYGA 100
Score = 35.0 bits (79), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 1/95 (1%)
Query: 228 EDESIVHHTASVGDAEGLKNALAAGADKDEEDSE-GRTALHFACGYGEVKCAQILLEAGA 286
E+ +++H A + +K ++ GA D+ + T LH+A G + L++ GA
Sbjct: 41 ENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGA 100
Query: 287 NVDALDKNKNTALHYAAGYGRKECVALLLENGAAV 321
+ +D + +H AA +G VA L+ G V
Sbjct: 101 DPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDV 135
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 22/36 (61%)
Query: 264 TALHFACGYGEVKCAQILLEAGANVDALDKNKNTAL 299
TALH+A G +LLEAGANVDA + +AL
Sbjct: 179 TALHWAVLAGNTTVISLLLEAGANVDAQNIKGESAL 214
Score = 31.6 bits (70), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 27/53 (50%)
Query: 269 ACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAV 321
A YG + + L+EAG +V DK T LH+AA R + V + GA V
Sbjct: 16 ATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIV 68
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 39/68 (57%)
Query: 254 DKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVAL 313
D ++ D G + LH+AC G ++L+ GA ++ +++ +T LH AA +G ++ V
Sbjct: 26 DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQK 85
Query: 314 LLENGAAV 321
LL+ A +
Sbjct: 86 LLQYKADI 93
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 57/123 (46%), Gaps = 7/123 (5%)
Query: 199 GEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEE 258
G A+ + + D T + N G D S +H G + ++ + GA +
Sbjct: 11 GNAVAVRLWLDNTENDLNQGDDHGF-------SPLHWACREGRSAVVEMLIMRGARINVM 63
Query: 259 DSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENG 318
+ T LH A +G Q LL+ A+++A++++ N LHYA +G+ + L+ NG
Sbjct: 64 NRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANG 123
Query: 319 AAV 321
A V
Sbjct: 124 ALV 126
Score = 35.4 bits (80), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 35/65 (53%)
Query: 229 DESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANV 288
D++ +H AS G + ++ L AD + + G LH+AC +G+ + A+ L+ GA V
Sbjct: 67 DDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALV 126
Query: 289 DALDK 293
+K
Sbjct: 127 SICNK 131
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 48/103 (46%), Gaps = 11/103 (10%)
Query: 228 EDESIVHHT-----------ASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVK 276
E E++++HT A+ G ++ L GAD +AL AC G
Sbjct: 40 EQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTD 99
Query: 277 CAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGA 319
++LL+ G +V+ D N T L YA +CV +LLE+GA
Sbjct: 100 IVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGA 142
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 43/89 (48%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
VH A+ G+ L + + D EG T L +A +G++ + LL+ GA+ L
Sbjct: 23 VHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLG 82
Query: 293 KNKNTALHYAAGYGRKECVALLLENGAAV 321
K + +AL A G + V +LL+ G V
Sbjct: 83 KGRESALSLACSKGYTDIVKMLLDCGVDV 111
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 218 GADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKC 277
GAD + +G ES + S G + +K L G D +E D G T L +A VKC
Sbjct: 75 GAD-PQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKC 133
Query: 278 AQILLEAGAN 287
++LLE+GA+
Sbjct: 134 VKMLLESGAD 143
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 48/103 (46%), Gaps = 11/103 (10%)
Query: 228 EDESIVHHT-----------ASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVK 276
E E++++HT A+ G ++ L GAD +AL AC G
Sbjct: 22 EQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTD 81
Query: 277 CAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGA 319
++LL+ G +V+ D N T L YA +CV +LLE+GA
Sbjct: 82 IVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGA 124
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 43/89 (48%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
VH A+ G+ L + + D EG T L +A +G++ + LL+ GA+ L
Sbjct: 5 VHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLG 64
Query: 293 KNKNTALHYAAGYGRKECVALLLENGAAV 321
K + +AL A G + V +LL+ G V
Sbjct: 65 KGRESALSLACSKGYTDIVKMLLDCGVDV 93
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 218 GADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKC 277
GAD + +G ES + S G + +K L G D +E D G T L +A VKC
Sbjct: 57 GAD-PQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKC 115
Query: 278 AQILLEAGAN 287
++LLE+GA+
Sbjct: 116 VKMLLESGAD 125
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 35/63 (55%)
Query: 259 DSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENG 318
+ EG TALH A G + + L++ G NV+A D + T LH AA + L+E+G
Sbjct: 67 NDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESG 126
Query: 319 AAV 321
AAV
Sbjct: 127 AAV 129
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 229 DESI--VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGA 286
DE I +H+ G E +K + G + + DS+G T LH A V+ + L+E+GA
Sbjct: 68 DEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGA 127
Query: 287 NVDAL 291
V A+
Sbjct: 128 AVFAM 132
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 35/63 (55%)
Query: 259 DSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENG 318
+ EG TALH A G + + L++ G NV+A D + T LH AA + L+E+G
Sbjct: 67 NDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESG 126
Query: 319 AAV 321
AAV
Sbjct: 127 AAV 129
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 229 DESI--VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGA 286
DE I +H+ G E +K + G + + DS+G T LH A V+ + L+E+GA
Sbjct: 68 DEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGA 127
Query: 287 NVDAL 291
V A+
Sbjct: 128 AVFAM 132
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 48/103 (46%), Gaps = 11/103 (10%)
Query: 228 EDESIVHHT-----------ASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVK 276
E E++++HT A+ G ++ L GAD +AL AC G
Sbjct: 24 EQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTD 83
Query: 277 CAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGA 319
++LL+ G +V+ D N T L YA +CV +LLE+GA
Sbjct: 84 IVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGA 126
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 43/89 (48%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
VH A+ G+ L + + D EG T L +A +G++ + LL+ GA+ L
Sbjct: 7 VHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLG 66
Query: 293 KNKNTALHYAAGYGRKECVALLLENGAAV 321
K + +AL A G + V +LL+ G V
Sbjct: 67 KGRESALSLACSKGYTDIVKMLLDCGVDV 95
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 218 GADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKC 277
GAD + +G ES + S G + +K L G D +E D G T L +A VKC
Sbjct: 59 GAD-PQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKC 117
Query: 278 AQILLEAGAN 287
++LLE+GA+
Sbjct: 118 VKMLLESGAD 127
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 44/78 (56%)
Query: 237 ASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKN 296
A G + ++ +A GAD + +D +G T LH A G ++ ++LL+AGA+V+A DK
Sbjct: 10 ARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGK 69
Query: 297 TALHYAAGYGRKECVALL 314
TA + G ++ +L
Sbjct: 70 TAFDISIDNGNEDLAEIL 87
Score = 35.4 bits (80), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 28/43 (65%)
Query: 279 QILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAV 321
+IL+ GA+V+A DK+ T LH AA G E V +LL+ GA V
Sbjct: 19 RILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV 61
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 42/78 (53%)
Query: 237 ASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKN 296
A G + ++ +A GAD +D G T LH A G ++ ++LLEAGA+V+A DK
Sbjct: 14 ARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFGK 73
Query: 297 TALHYAAGYGRKECVALL 314
TA + G ++ +L
Sbjct: 74 TAFDISIDNGNEDLAEIL 91
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/43 (55%), Positives = 28/43 (65%)
Query: 279 QILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAV 321
+IL+ GA+V A DKN +T LH AA G E V LLLE GA V
Sbjct: 23 RILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADV 65
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 25/49 (51%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQIL 281
+H A G E +K L AGAD + +D G+TA + G A+IL
Sbjct: 43 LHLAARNGHLEVVKLLLEAGADVNAQDKFGKTAFDISIDNGNEDLAEIL 91
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 51/108 (47%), Gaps = 4/108 (3%)
Query: 218 GADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKC 277
G E + N ++ +H ++ + AGA D G+TA H AC + C
Sbjct: 35 GGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTC 94
Query: 278 AQILLEAGA----NVDALDKNKNTALHYAAGYGRKECVALLLENGAAV 321
+ LL++ A +++A + + TALH A +E V LLLE GA +
Sbjct: 95 LRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADI 142
Score = 41.2 bits (95), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 243 EGLKNALAAGADKDEED-SEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHY 301
E ++ L GAD D D GR+ L A + Q+LL+ GANV+A + ++ALH
Sbjct: 130 ETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHS 189
Query: 302 AAGYGRKECVALLLENGA 319
A+G G V L+ +GA
Sbjct: 190 ASGRGLLPLVRTLVRSGA 207
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 254 DKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD-KNKNTALHYAAGYGRKECVA 312
D + + +G TALH A + Q+LLE GA++DA+D K+ + L +A V
Sbjct: 108 DLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQ 167
Query: 313 LLLENGAAV 321
LLL++GA V
Sbjct: 168 LLLQHGANV 176
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Query: 233 VHHTASVGDAEGLKNAL--AAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDA 290
H SVG+ E +K+ D ++ ++G T LH A G + +Q L+E GA+V
Sbjct: 76 FHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRI 135
Query: 291 LDKNKNTALHYAAGYGRKECVALL 314
DK LH AA G + + LL
Sbjct: 136 KDKFNQIPLHRAASVGSLKLIELL 159
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
Query: 256 DEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKN---TALHYAAGYGRKECVA 312
D D G T H AC G ++ + L + D L+K N T LH A G E
Sbjct: 66 DYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPD-LNKITNQGVTCLHLAVGKKWFEVSQ 124
Query: 313 LLLENGAAV 321
L+ENGA+V
Sbjct: 125 FLIENGASV 133
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 234 HHTASVGDAEGLKNAL--AAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDAL 291
H SVG+ E +K+ D ++ ++G T LH A G + +Q L+E GA+V
Sbjct: 77 HIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIK 136
Query: 292 DKNKNTALHYAAGYGRKECVALL 314
DK LH AA G + + LL
Sbjct: 137 DKFNQIPLHRAASVGSLKLIELL 159
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
Query: 256 DEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKN---TALHYAAGYGRKECVA 312
D D G T H AC G ++ + L + D L+K N T LH A G E
Sbjct: 66 DYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPD-LNKITNQGVTCLHLAVGKKWFEVSQ 124
Query: 313 LLLENGAAV 321
L+ENGA+V
Sbjct: 125 FLIENGASV 133
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 38/75 (50%)
Query: 245 LKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAG 304
+++ + A AD + D+ G+TALH+A + ILL AN DA D T L AA
Sbjct: 134 VEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAR 193
Query: 305 YGRKECVALLLENGA 319
G E LL+N A
Sbjct: 194 EGSYEASKALLDNFA 208
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 40/101 (39%), Gaps = 34/101 (33%)
Query: 249 LAAGADKDEEDSEGRTALHFACGYGEVKCAQILLE------------------------- 283
L AGAD + +D+ GRT LH A + QILL
Sbjct: 71 LDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAI 130
Query: 284 ---------AGANVDALDKNKNTALHYAAGYGRKECVALLL 315
A A+++A D + TALH+AA E V +LL
Sbjct: 131 EGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILL 171
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 49/103 (47%), Gaps = 10/103 (9%)
Query: 218 GADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEE-DSEGRTALHFACGYGEVK 276
G D E++ N ++S TA V + + LA GA+ + D G T+LH A +
Sbjct: 15 GLDTGEDIENNEDS----TAQV-----ISDLLAQGAELNATMDKTGETSLHLAARFARAD 65
Query: 277 CAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGA 319
A+ LL+AGA+ ++ D T LH A +LL N A
Sbjct: 66 AAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRA 108
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 234 HHTASVGDAEGLKNAL--AAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDAL 291
H SVG+ E +K+ D ++ ++G T LH A G + +Q L+E GA+V
Sbjct: 77 HIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIK 136
Query: 292 DKNKNTALHYAAGYGRKECVALL 314
DK LH AA G + + LL
Sbjct: 137 DKFNQIPLHRAASVGSLKLIELL 159
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
Query: 256 DEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKN---TALHYAAGYGRKECVA 312
D D G T H AC G ++ + L + D L+K N T LH A G E
Sbjct: 66 DYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPD-LNKITNQGVTCLHLAVGKKWFEVSQ 124
Query: 313 LLLENGAAV 321
L+ENGA+V
Sbjct: 125 FLIENGASV 133
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 41/78 (52%)
Query: 237 ASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKN 296
A G + ++ +A GAD +D G T LH A G ++ ++LLEAGA+V A DK
Sbjct: 32 ARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGK 91
Query: 297 TALHYAAGYGRKECVALL 314
TA + G ++ +L
Sbjct: 92 TAFDISIDNGNEDLAEIL 109
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 28/44 (63%)
Query: 278 AQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAV 321
+IL+ GA+V A DKN +T LH AA G E V LLLE GA V
Sbjct: 40 VRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADV 83
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 47/96 (48%), Gaps = 11/96 (11%)
Query: 237 ASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKN 296
A G + LK L+ GAD +E D G TA A YG+VK + L + GANV+ K K
Sbjct: 100 AIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKE 159
Query: 297 ----------TALHYAAGYGRKECVALLL-ENGAAV 321
TAL AA G E + +LL E GA V
Sbjct: 160 DQERLRKGGATALMDAAEKGHVEVLKILLDEMGADV 195
Score = 35.4 bits (80), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 33/73 (45%)
Query: 249 LAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRK 308
L GAD G T A G VK ++ L GA+V+ D TA AA YG+
Sbjct: 79 LRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKV 138
Query: 309 ECVALLLENGAAV 321
+ + L + GA V
Sbjct: 139 KALKFLYKRGANV 151
Score = 27.7 bits (60), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 41/95 (43%), Gaps = 1/95 (1%)
Query: 228 EDESIVHHTASVGDAEGLKNALAAGADKD-EEDSEGRTALHFACGYGEVKCAQILLEAGA 286
ED ++ D + ++ L GA+ + +E+ G T LH A ++LL GA
Sbjct: 24 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGA 83
Query: 287 NVDALDKNKNTALHYAAGYGRKECVALLLENGAAV 321
+ KN T AA G + + L L GA V
Sbjct: 84 DPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADV 118
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 47/96 (48%), Gaps = 11/96 (11%)
Query: 237 ASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKN 296
A G + LK L+ GAD +E D G TA A YG+VK + L + GANV+ K K
Sbjct: 80 AIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKE 139
Query: 297 ----------TALHYAAGYGRKECVALLL-ENGAAV 321
TAL AA G E + +LL E GA V
Sbjct: 140 DQERLRKGGATALMDAAEKGHVEVLKILLDEMGADV 175
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 33/73 (45%)
Query: 249 LAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRK 308
L GAD G T A G VK ++ L GA+V+ D TA AA YG+
Sbjct: 59 LRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKV 118
Query: 309 ECVALLLENGAAV 321
+ + L + GA V
Sbjct: 119 KALKFLYKRGANV 131
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 50/106 (47%), Gaps = 7/106 (6%)
Query: 216 NAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEV 275
N A++AE + N +H A G+ L+ L + D G TAL++AC G
Sbjct: 64 NYVAEQAESIDNP----LHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHK 119
Query: 276 KCAQILLEAGANVDALDKNK--NTALHYAAGYGRKECVALLLENGA 319
+ L N++ +NK +TALH AA G + V LLL GA
Sbjct: 120 DIVEXLFTQ-PNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGA 164
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 42/85 (49%)
Query: 237 ASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKN 296
A G+ E ++ A+ D + + EG TALH A L+ AGANV++ D +
Sbjct: 29 ALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGW 88
Query: 297 TALHYAAGYGRKECVALLLENGAAV 321
T LH AA L+++GAA+
Sbjct: 89 TPLHCAASCNDTVICMALVQHGAAI 113
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 6/79 (7%)
Query: 249 LAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGAN------VDALDKNKNTALHYA 302
L AG D + D G T LH AC G + +L ++ + A + N +T LH A
Sbjct: 65 LGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLA 124
Query: 303 AGYGRKECVALLLENGAAV 321
+ +G V LL+ GA V
Sbjct: 125 SIHGYLGIVELLVSLGADV 143
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 262 GRTALHFACGYGEVKCAQILLEAGANVDALDK-NKNTALHYAAGYGRKECVALLLENGAA 320
G T LH A +G + ++L+ GA+V+A + N TALH A + V+LLL+ GA
Sbjct: 117 GHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGAD 176
Query: 321 V 321
V
Sbjct: 177 V 177
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 44/106 (41%), Gaps = 4/106 (3%)
Query: 204 LAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAA-GADKD-EEDSE 261
LA G T S + N + H AS+ G+ L + GAD + +E
Sbjct: 91 LASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCN 150
Query: 262 GRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGR 307
GRTALH A +LL+ GA+V+ + + Y +GR
Sbjct: 151 GRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSP--YQLTWGR 194
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 3/89 (3%)
Query: 229 DESIVHHTASVGDAEGLKNA---LAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAG 285
+E ++H V + L + G D + ++G TALH+A Y + C ++LL+
Sbjct: 171 EELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGR 230
Query: 286 ANVDALDKNKNTALHYAAGYGRKECVALL 314
A V +++ TAL A KEC LL
Sbjct: 231 ALVGTVNEAGETALDIARKKHHKECEELL 259
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 28/42 (66%)
Query: 280 ILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAV 321
+++ G ++DA + NTALHYAA Y + +C+ LLL+ A V
Sbjct: 192 FIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALV 233
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 35/66 (53%)
Query: 249 LAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRK 308
L GA + +D+ G + +H A G + ++L+E GA+V+ALD + +H A G
Sbjct: 63 LKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHS 122
Query: 309 ECVALL 314
V+ L
Sbjct: 123 SVVSFL 128
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 256 DEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLL 315
D + G+TAL +G A LL+ GA+ + D + + +H AA G + + +L+
Sbjct: 38 DALNRFGKTALQVMM-FGSPAVALELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLV 96
Query: 316 ENGAAV 321
E+GA V
Sbjct: 97 EHGADV 102
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 6/79 (7%)
Query: 249 LAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGAN------VDALDKNKNTALHYA 302
L AG D + D G T LH AC G + +L ++ + A + N +T LH A
Sbjct: 62 LGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLA 121
Query: 303 AGYGRKECVALLLENGAAV 321
+ +G V LL+ GA V
Sbjct: 122 SIHGYLGIVELLVSLGADV 140
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 259 DSEGRTALHFACGYGEVKCAQILLEAGANVDALDK-NKNTALHYAAGYGRKECVALLLEN 317
+ G T LH A +G + ++L+ GA+V+A + N TALH A + V+LLL+
Sbjct: 111 NYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKC 170
Query: 318 GAAV 321
GA V
Sbjct: 171 GADV 174
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 44/106 (41%), Gaps = 4/106 (3%)
Query: 204 LAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAA-GADKD-EEDSE 261
LA G T S + N + H AS+ G+ L + GAD + +E
Sbjct: 88 LASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCN 147
Query: 262 GRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGR 307
GRTALH A +LL+ GA+V+ + + Y +GR
Sbjct: 148 GRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSP--YQLTWGR 191
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 35/66 (53%)
Query: 249 LAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRK 308
L GA + +D+ G + +H A G + ++L+E GA+V+ALD + +H A G
Sbjct: 61 LKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHS 120
Query: 309 ECVALL 314
V+ L
Sbjct: 121 SVVSFL 126
Score = 28.1 bits (61), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 256 DEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLL 315
D + G+TAL +G A LL+ GA+ + D + + +H AA G + + +L+
Sbjct: 36 DALNRFGKTALQVMM-FGSPAVALELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLV 94
Query: 316 ENGAAV 321
E+GA V
Sbjct: 95 EHGADV 100
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|F Chain F, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|G Chain G, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|H Chain H, Crystal Structure Of Uplc1 Gap Domain
Length = 301
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 3/89 (3%)
Query: 229 DESIVHHTASVGDAEGLKNA---LAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAG 285
+E ++H V + L + G D + ++G TALH+A Y + C ++LL+
Sbjct: 190 EELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGR 249
Query: 286 ANVDALDKNKNTALHYAAGYGRKECVALL 314
A V +++ TAL A KEC LL
Sbjct: 250 ALVGTVNEAGETALDIARKKHHKECEELL 278
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 28/42 (66%)
Query: 280 ILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAV 321
+++ G ++DA + NTALHYAA Y + +C+ LLL+ A V
Sbjct: 211 FIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALV 252
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 31/61 (50%)
Query: 256 DEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLL 315
D ++ G+TALH A GE + L AGA V ++ +TALH A C +LL
Sbjct: 39 DLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLL 98
Query: 316 E 316
+
Sbjct: 99 Q 99
Score = 34.7 bits (78), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 29/54 (53%)
Query: 230 ESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLE 283
++ +H A +G+A ++ AAGA + G TALH AC CA +LL+
Sbjct: 46 QTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQ 99
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 224 EVGNEDESIVHHTASVG-DAEGLKNALAAGADKDE-EDSEGRTALHFACGYGEVKCAQIL 281
E N D H A + DAE ++ AGAD ++ E + GRT LH A ++L
Sbjct: 152 EAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELL 211
Query: 282 LEAGAN 287
L+AGA+
Sbjct: 212 LKAGAD 217
Score = 27.7 bits (60), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 258 EDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKN-KNTALHYAAGYGRKECVALLLE 316
E+ +G T LH A + + + ++L +AGA+++ + T LH A + LLL+
Sbjct: 154 ENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLK 213
Query: 317 NGA 319
GA
Sbjct: 214 AGA 216
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 31/61 (50%)
Query: 256 DEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLL 315
D ++ G+TALH A GE + L AGA V ++ +TALH A C +LL
Sbjct: 39 DLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLL 98
Query: 316 E 316
+
Sbjct: 99 Q 99
Score = 34.7 bits (78), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 29/54 (53%)
Query: 230 ESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLE 283
++ +H A +G+A ++ AAGA + G TALH AC CA +LL+
Sbjct: 46 QTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQ 99
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 224 EVGNEDESIVHHTASVG-DAEGLKNALAAGADKDE-EDSEGRTALHFACGYGEVKCAQIL 281
E N D H A + DAE ++ AGAD ++ E + GRT LH A ++L
Sbjct: 152 EAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELL 211
Query: 282 LEAGAN 287
L+AGA+
Sbjct: 212 LKAGAD 217
Score = 27.7 bits (60), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 258 EDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKN-KNTALHYAAGYGRKECVALLLE 316
E+ +G T LH A + + + ++L +AGA+++ + T LH A + LLL+
Sbjct: 154 ENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLK 213
Query: 317 NGA 319
GA
Sbjct: 214 AGA 216
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 37/62 (59%)
Query: 256 DEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLL 315
DE D+EG T L+ A +++ A+ L++ GA+++ + ++ YA GR E +A +L
Sbjct: 33 DEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYML 92
Query: 316 EN 317
++
Sbjct: 93 KH 94
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 237 ASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEA-GANVDALDKNK 295
S G + +K LA AD + +D +G TAL AC +G + A +LL ++ D++
Sbjct: 191 VSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDG 250
Query: 296 NTALHYAAGYGRKECVALL 314
+TAL A G+ E ++L
Sbjct: 251 STALMVALDAGQSEIASML 269
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 30/54 (55%)
Query: 262 GRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLL 315
G+TAL A +G V + LL A+V+ D + +TAL A +G KE LLL
Sbjct: 183 GQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLL 236
Score = 27.7 bits (60), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 288 VDALDKNKNTALHYAAGYGRKECVALLLENGAA 320
V+ D N NTALHY+ + V LL++G
Sbjct: 104 VNIADSNGNTALHYSVSHANFPVVQQLLDSGVC 136
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 30/64 (46%)
Query: 256 DEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLL 315
++ D G TALH A Y A+ LLEA A+ + D T LH A + +L+
Sbjct: 19 NQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILI 78
Query: 316 ENGA 319
N A
Sbjct: 79 RNRA 82
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 41/75 (54%)
Query: 245 LKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAG 304
L++ + + AD + D G++ALH+A V A +LL+ GAN D + + T L AA
Sbjct: 108 LEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAR 167
Query: 305 YGRKECVALLLENGA 319
G E +LL++ A
Sbjct: 168 EGSYETAKVLLDHFA 182
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 1/87 (1%)
Query: 218 GADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKC 277
GA + E+ +H A ++ K L A AD + +D+ GRT LH A
Sbjct: 14 GASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGV 73
Query: 278 AQILLEAGA-NVDALDKNKNTALHYAA 303
QIL+ A ++DA + T L AA
Sbjct: 74 FQILIRNRATDLDARMHDGTTPLILAA 100
Score = 28.1 bits (61), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 24/44 (54%)
Query: 249 LAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
L GA+KD +++ T L A G + A++LL+ AN D D
Sbjct: 145 LKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITD 188
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 30/64 (46%)
Query: 256 DEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLL 315
++ D G TALH A Y A+ LLEA A+ + D T LH A + +L+
Sbjct: 51 NQTDRTGATALHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILI 110
Query: 316 ENGA 319
N A
Sbjct: 111 RNRA 114
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 41/75 (54%)
Query: 245 LKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAG 304
L++ + + AD + D G++ALH+A V A +LL+ GAN D + + T L AA
Sbjct: 140 LEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAR 199
Query: 305 YGRKECVALLLENGA 319
G E +LL++ A
Sbjct: 200 EGSYETAKVLLDHFA 214
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
Query: 235 HTASVGDAEGLKNALAA--GADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
H A DA+G+ L D D +G T L A + L+ + A+V+A+D
Sbjct: 95 HAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVD 154
Query: 293 KNKNTALHYAAGYGRKECVALLLENGA 319
+ALH+AA + +LL+NGA
Sbjct: 155 DLGKSALHWAAAVNNVDAAVVLLKNGA 181
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGA-NVDAL 291
+H A+ ++ K L A AD + +D+ GRT LH A QIL+ A ++DA
Sbjct: 61 LHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDAR 120
Query: 292 DKNKNTALHYAA 303
+ T L AA
Sbjct: 121 MHDGTTPLILAA 132
Score = 27.7 bits (60), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 24/44 (54%)
Query: 249 LAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
L GA+KD +++ T L A G + A++LL+ AN D D
Sbjct: 177 LKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITD 220
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 30/64 (46%)
Query: 256 DEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLL 315
++ D G TALH A Y A+ LLEA A+ + D T LH A + +L+
Sbjct: 51 NQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILI 110
Query: 316 ENGA 319
N A
Sbjct: 111 RNRA 114
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 41/75 (54%)
Query: 245 LKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAG 304
L++ + + AD + D G++ALH+A V A +LL+ GAN D + + T L AA
Sbjct: 140 LEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAR 199
Query: 305 YGRKECVALLLENGA 319
G E +LL++ A
Sbjct: 200 EGSYETAKVLLDHFA 214
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 230 ESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGA-NV 288
E+ +H A ++ K L A AD + +D+ GRT LH A QIL+ A ++
Sbjct: 58 ETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDL 117
Query: 289 DALDKNKNTALHYAA 303
DA + T L AA
Sbjct: 118 DARMHDGTTPLILAA 132
Score = 27.7 bits (60), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 24/44 (54%)
Query: 249 LAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
L GA+KD +++ T L A G + A++LL+ AN D D
Sbjct: 177 LKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITD 220
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 30/64 (46%)
Query: 256 DEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLL 315
++ D G TALH A Y A+ LLEA A+ + D T LH A + +L+
Sbjct: 52 NQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILI 111
Query: 316 ENGA 319
N A
Sbjct: 112 RNRA 115
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 41/75 (54%)
Query: 245 LKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAG 304
L++ + + AD + D G++ALH+A V A +LL+ GAN D + + T L AA
Sbjct: 141 LEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAR 200
Query: 305 YGRKECVALLLENGA 319
G E +LL++ A
Sbjct: 201 EGSYETAKVLLDHFA 215
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 230 ESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGA-NV 288
E+ +H A ++ K L A AD + +D+ GRT LH A QIL+ A ++
Sbjct: 59 ETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDL 118
Query: 289 DALDKNKNTALHYAA 303
DA + T L AA
Sbjct: 119 DARMHDGTTPLILAA 133
Score = 28.1 bits (61), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 24/44 (54%)
Query: 249 LAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
L GA+KD +++ T L A G + A++LL+ AN D D
Sbjct: 178 LKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITD 221
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 29/64 (45%)
Query: 256 DEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLL 315
++ D G TALH A Y A+ LLEA A+ D T LH A + +LL
Sbjct: 16 NQTDRTGETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAAVSADAQGVFQILL 75
Query: 316 ENGA 319
N A
Sbjct: 76 RNRA 79
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 41/75 (54%)
Query: 245 LKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAG 304
L++ + + AD + D G++ALH+A V A +LL+ GAN D + + T L AA
Sbjct: 105 LEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNKEETPLFLAAR 164
Query: 305 YGRKECVALLLENGA 319
G E +LL++ A
Sbjct: 165 EGSYETAKVLLDHFA 179
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Query: 230 ESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGA-NV 288
E+ +H A ++ K L A AD +D+ GRT LH A QILL A ++
Sbjct: 23 ETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAAVSADAQGVFQILLRNRATDL 82
Query: 289 DALDKNKNTALHYAA 303
DA + T L AA
Sbjct: 83 DARMHDGTTPLILAA 97
Score = 28.1 bits (61), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%)
Query: 249 LAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
L GA+KD ++++ T L A G + A++LL+ AN D D
Sbjct: 142 LKNGANKDMQNNKEETPLFLAAREGSYETAKVLLDHFANRDITD 185
>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major
Length = 364
Score = 34.7 bits (78), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 2/90 (2%)
Query: 227 NEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGA 286
+E+ +H A G + ++ + G ++ G TALH AC +G V A+ L G
Sbjct: 18 DENXEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVG- 76
Query: 287 NVDALDKNKNTALHYAAGYGRKECVALLLE 316
V +L + +H A + + V L+E
Sbjct: 77 EVHSLWHGQK-PIHLAVXANKTDLVVALVE 105
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 34.3 bits (77), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 36/79 (45%), Gaps = 17/79 (21%)
Query: 258 EDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHY---------------A 302
E EG+TALH A V + LL GA+V A + + HY A
Sbjct: 71 ELYEGQTALHIAVINQNVNLVRALLARGASVSA--RATGSVFHYRPHNLIYYGEHPLSFA 128
Query: 303 AGYGRKECVALLLENGAAV 321
A G +E V LL+E+GA +
Sbjct: 129 ACVGSEEIVRLLIEHGADI 147
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 49/127 (38%), Gaps = 14/127 (11%)
Query: 155 DQIEERMAKIKEDPSL--KPILDEIESGGPSAMMKYWNDKDVLQKLGEAMGLAVGGDATT 212
D +E M ++ P L +P+ E+ G + + N L + A G +V AT
Sbjct: 48 DNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATG 107
Query: 213 SADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALH----- 267
S + G S A VG E ++ + GAD +DS G T LH
Sbjct: 108 SVFHYRPHNLIYYGEHPLSF---AACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQ 164
Query: 268 ----FAC 270
FAC
Sbjct: 165 PNKTFAC 171
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 262 GRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALH 300
G L FA G + ++L+E GA++ A D NT LH
Sbjct: 121 GEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLH 159
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 5/75 (6%)
Query: 252 GADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANV-----DALDKNKNTALHYAAGYG 306
G + + + G TALH A Y ++ A +L+EA + + TALH A
Sbjct: 27 GCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQ 86
Query: 307 RKECVALLLENGAAV 321
V LL GA+V
Sbjct: 87 NVNLVRALLARGASV 101
>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin
Repeats Of Papbeta
Length = 278
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 8/105 (7%)
Query: 218 GADEAEEV----GNE-DESIVHHTASVGDAEGLKNA---LAAGADKDEEDSEGRTALHFA 269
G D E++ G+E DE+ +H D L + + D++ +G TALH+
Sbjct: 153 GVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYC 212
Query: 270 CGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALL 314
C +C ++LL A+++ +++ T L A + C LL
Sbjct: 213 CLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELL 257
Score = 32.0 bits (71), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 36/90 (40%), Gaps = 9/90 (10%)
Query: 241 DAEGLKNALAAGADKDEE------DSEGRTALHFACG---YGEVKCAQILLEAGANVDAL 291
D GL A A G D E+ TALH A + L++ N+D
Sbjct: 142 DIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQ 201
Query: 292 DKNKNTALHYAAGYGRKECVALLLENGAAV 321
+TALHY EC+ LLL A++
Sbjct: 202 TGKGSTALHYCCLTDNAECLKLLLRGKASI 231
>pdb|3KEA|A Chain A, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
pdb|3KEA|B Chain B, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
Length = 285
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 32/56 (57%)
Query: 228 EDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLE 283
E+E +H A++ D + +K L +G D + D +G TAL++A G + ++ ++
Sbjct: 61 ENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNXQTVKLFVK 116
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 249 LAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRK 308
L AGA K+ ++E LH A + K +ILL +G + D NTAL+YA G
Sbjct: 51 LNAGALKNLLENEF--PLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNX 108
Query: 309 ECVALLLE 316
+ V L ++
Sbjct: 109 QTVKLFVK 116
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 32/66 (48%)
Query: 249 LAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRK 308
L GA + +D+ G + +H A G + ++L+E GA+V+ D +H A G
Sbjct: 61 LKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHT 120
Query: 309 ECVALL 314
V+ L
Sbjct: 121 AVVSFL 126
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 256 DEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLL 315
D + G+TAL +G A LL+ GA+ + D + + +H AA G + + +L+
Sbjct: 36 DALNRFGKTALQVMM-FGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLV 94
Query: 316 ENGAAV 321
E+GA V
Sbjct: 95 EHGADV 100
>pdb|2F37|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
pdb|2F37|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
Length = 251
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 13/70 (18%)
Query: 261 EGRTALHFACGYGEVKCAQILLEAGANVDA------LDKNKNTALHY-------AAGYGR 307
G +ALH A ++C ++L+E GANV A K + T ++ AA +
Sbjct: 94 RGHSALHIAIEKRSLQCVKLLVENGANVHARACGRFFQKGQGTCFYFGELPLSLAACTKQ 153
Query: 308 KECVALLLEN 317
+ V+ LLEN
Sbjct: 154 WDVVSYLLEN 163
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 32/66 (48%)
Query: 249 LAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRK 308
L GA + +D+ G + +H A G + ++L+E GA+V+ D +H A G
Sbjct: 55 LKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHT 114
Query: 309 ECVALL 314
V+ L
Sbjct: 115 AVVSFL 120
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 256 DEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLL 315
D + G+TAL +G A LL+ GA+ + D + + +H AA G + + +L+
Sbjct: 30 DALNRFGKTALQVMM-FGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLV 88
Query: 316 ENGAAV 321
E+GA V
Sbjct: 89 EHGADV 94
>pdb|1YMP|A Chain A, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
pdb|1YMP|B Chain B, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
Length = 135
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 41/75 (54%)
Query: 245 LKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAG 304
L++ + + AD + D G++ALH+A V A +LL+ GAN D + + T L AA
Sbjct: 31 LEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNKEETPLFLAAR 90
Query: 305 YGRKECVALLLENGA 319
G E +LL++ A
Sbjct: 91 EGSYETAKVLLDHFA 105
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%)
Query: 249 LAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
L GA+KD ++++ T L A G + A++LL+ AN D D
Sbjct: 68 LKNGANKDMQNNKEETPLFLAAREGSYETAKVLLDHFANRDITD 111
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
pdb|3JUE|B Chain B, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
Length = 368
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 30/66 (45%)
Query: 249 LAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRK 308
L GA+ ++ DS GR LH A G A + L+ GA++ A D L A
Sbjct: 255 LQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANA 314
Query: 309 ECVALL 314
+ V LL
Sbjct: 315 DIVTLL 320
Score = 31.2 bits (69), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 44/102 (43%), Gaps = 9/102 (8%)
Query: 227 NEDESIVHHTASVGDAEG-------LKNALAAGADKDEEDS--EGRTALHFACGYGEVKC 277
+ED +H A + A G + +ALA GAD + + + T L A +
Sbjct: 191 SEDLGSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLA 250
Query: 278 AQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGA 319
+ LL+ GANV+ D LH+A G L L+ GA
Sbjct: 251 CEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGA 292
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
pdb|3T9K|B Chain B, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
Length = 390
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 30/66 (45%)
Query: 249 LAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRK 308
L GA+ ++ DS GR LH A G A + L+ GA++ A D L A
Sbjct: 255 LQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANA 314
Query: 309 ECVALL 314
+ V LL
Sbjct: 315 DIVTLL 320
Score = 31.2 bits (69), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
Query: 245 LKNALAAGADKDEEDS--EGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYA 302
+ +ALA GAD + + + T L A + + LL+ GANV+ D LH+A
Sbjct: 216 MADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHA 275
Query: 303 AGYGRKECVALLLENGA 319
G L L+ GA
Sbjct: 276 TILGHTGLACLFLKRGA 292
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
pdb|4F1P|B Chain B, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
Length = 368
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 30/66 (45%)
Query: 249 LAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRK 308
L GA+ ++ DS GR LH A G A + L+ GA++ A D L A
Sbjct: 255 LQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANA 314
Query: 309 ECVALL 314
+ V LL
Sbjct: 315 DIVTLL 320
Score = 31.2 bits (69), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 44/102 (43%), Gaps = 9/102 (8%)
Query: 227 NEDESIVHHTASVGDAEG-------LKNALAAGADKDEEDS--EGRTALHFACGYGEVKC 277
+ED +H A + A G + +ALA GAD + + + T L A +
Sbjct: 191 SEDLGSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLA 250
Query: 278 AQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGA 319
+ LL+ GANV+ D LH+A G L L+ GA
Sbjct: 251 CEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGA 292
>pdb|2ETC|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
pdb|2ETC|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 274
Score = 31.6 bits (70), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 13/80 (16%)
Query: 251 AGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDA------LDKNKNTALHY--- 301
A +E +G +ALH A ++C ++L+E GA+V K++ T ++
Sbjct: 92 VNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGEL 151
Query: 302 ----AAGYGRKECVALLLEN 317
AA + + V LLEN
Sbjct: 152 PLSLAACTKQWDVVTYLLEN 171
>pdb|3FFS|A Chain A, The Crystal Structure Of Cryptosporidium Parvum
Inosine-5'- Monophosphate Dehydrogenase
pdb|3FFS|B Chain B, The Crystal Structure Of Cryptosporidium Parvum
Inosine-5'- Monophosphate Dehydrogenase
pdb|3FFS|C Chain C, The Crystal Structure Of Cryptosporidium Parvum
Inosine-5'- Monophosphate Dehydrogenase
pdb|3FFS|D Chain D, The Crystal Structure Of Cryptosporidium Parvum
Inosine-5'- Monophosphate Dehydrogenase
Length = 400
Score = 31.2 bits (69), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 23/34 (67%)
Query: 259 DSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
D++GR + A G E++ A++L+EAG +V LD
Sbjct: 130 DNKGRLRVGAAIGVNEIERAKLLVEAGVDVIVLD 163
>pdb|2ETA|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETA|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETB|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 256
Score = 30.8 bits (68), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 13/78 (16%)
Query: 253 ADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDA------LDKNKNTALHY----- 301
A +E +G +ALH A ++C ++L+E GA+V K++ T ++
Sbjct: 81 AQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPL 140
Query: 302 --AAGYGRKECVALLLEN 317
AA + + V LLEN
Sbjct: 141 SLAACTKQWDVVTYLLEN 158
>pdb|2EZ2|A Chain A, Apo Tyrosine Phenol-Lyase From Citrobacter Freundii At Ph
8.0
pdb|2EZ2|B Chain B, Apo Tyrosine Phenol-Lyase From Citrobacter Freundii At Ph
8.0
pdb|2VLF|A Chain A, Quinonoid Intermediate Of Citrobacter Freundii Tyrosine
Phenol-Lyase Formed With Alanine
pdb|2VLF|B Chain B, Quinonoid Intermediate Of Citrobacter Freundii Tyrosine
Phenol-Lyase Formed With Alanine
pdb|2VLH|A Chain A, Quinonoid Intermediate Of Citrobacter Freundii Tyrosine
Phenol-Lyase Formed With Methionine
pdb|2YCT|A Chain A, Tyrosine Phenol-Lyase From Citrobacter Freundii In Complex
With Pyridine N-Oxide And The Quinonoid Intermediate
Formed With L-Alanine
pdb|2YCT|B Chain B, Tyrosine Phenol-Lyase From Citrobacter Freundii In Complex
With Pyridine N-Oxide And The Quinonoid Intermediate
Formed With L-Alanine
Length = 456
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Query: 195 LQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDES---IVHHTASVGD 241
+++L EA G+ V DAT +NA + +E G E++S IVH S D
Sbjct: 200 VRELTEAHGIKVFYDATRCVENAYFIKEQEQGFENKSIAEIVHEMFSYAD 249
>pdb|2YCN|A Chain A, Y71f Mutant Of Tyrosine Phenol-Lyase From Citrobacter
Freundii In Complex With Quinonoid Intermediate Formed
With 3-Fluoro-L-Tyrosine
pdb|2YCN|B Chain B, Y71f Mutant Of Tyrosine Phenol-Lyase From Citrobacter
Freundii In Complex With Quinonoid Intermediate Formed
With 3-Fluoro-L-Tyrosine
Length = 456
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Query: 195 LQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDES---IVHHTASVGD 241
+++L EA G+ V DAT +NA + +E G E++S IVH S D
Sbjct: 200 VRELTEAHGIKVFYDATRCVENAYFIKEQEQGFENKSIAEIVHEMFSYAD 249
>pdb|2EZ1|A Chain A, Holo Tyrosine Phenol-Lyase From Citrobacter Freundii At Ph
8.0
pdb|2EZ1|B Chain B, Holo Tyrosine Phenol-Lyase From Citrobacter Freundii At Ph
8.0
pdb|2VLH|B Chain B, Quinonoid Intermediate Of Citrobacter Freundii Tyrosine
Phenol-Lyase Formed With Methionine
Length = 456
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Query: 195 LQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDES---IVHHTASVGD 241
+++L EA G+ V DAT +NA + +E G E++S IVH S D
Sbjct: 200 VRELTEAHGIKVFYDATRCVENAYFIKEQEQGFENKSIAEIVHEMFSYAD 249
>pdb|2YCP|A Chain A, F448h Mutant Of Tyrosine Phenol-Lyase From Citrobacter
Freundii In Complex With Quinonoid Intermediate Formed
With 3-Fluoro-L-Tyrosine
pdb|2YCP|B Chain B, F448h Mutant Of Tyrosine Phenol-Lyase From Citrobacter
Freundii In Complex With Quinonoid Intermediate Formed
With 3-Fluoro-L-Tyrosine
pdb|2YCP|C Chain C, F448h Mutant Of Tyrosine Phenol-Lyase From Citrobacter
Freundii In Complex With Quinonoid Intermediate Formed
With 3-Fluoro-L-Tyrosine
pdb|2YCP|D Chain D, F448h Mutant Of Tyrosine Phenol-Lyase From Citrobacter
Freundii In Complex With Quinonoid Intermediate Formed
With 3-Fluoro-L-Tyrosine
Length = 456
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Query: 195 LQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDES---IVHHTASVGD 241
+++L EA G+ V DAT +NA + +E G E++S IVH S D
Sbjct: 200 VRELTEAHGIKVFYDATRCVENAYFIKEQEQGFENKSIAEIVHEMFSYAD 249
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.308 0.125 0.347
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,865,370
Number of Sequences: 62578
Number of extensions: 342733
Number of successful extensions: 1351
Number of sequences better than 100.0: 121
Number of HSP's better than 100.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 865
Number of HSP's gapped (non-prelim): 377
length of query: 321
length of database: 14,973,337
effective HSP length: 99
effective length of query: 222
effective length of database: 8,778,115
effective search space: 1948741530
effective search space used: 1948741530
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 51 (24.3 bits)