Query 020811
Match_columns 321
No_of_seqs 204 out of 701
Neff 4.3
Searched_HMMs 46136
Date Fri Mar 29 05:20:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020811.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020811hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1726 HVA22/DP1 gene product 100.0 7.4E-41 1.6E-45 307.9 19.1 159 6-164 1-159 (225)
2 PF03134 TB2_DP1_HVA22: TB2/DP 100.0 2.7E-29 5.9E-34 201.0 10.0 94 3-98 1-94 (94)
3 KOG1725 Protein involved in me 100.0 9.5E-29 2.1E-33 222.5 8.7 110 1-112 52-161 (186)
4 COG5052 YOP1 Protein involved 99.8 6.2E-20 1.4E-24 164.3 10.2 107 3-112 56-163 (186)
5 PF10066 DUF2304: Uncharacteri 81.2 14 0.0003 30.9 8.8 68 10-78 7-74 (115)
6 KOG1726 HVA22/DP1 gene product 77.2 14 0.0003 35.2 8.4 76 35-110 97-172 (225)
7 PF09726 Macoilin: Transmembra 71.4 3.6 7.7E-05 44.7 3.3 9 133-141 191-199 (697)
8 PF10112 Halogen_Hydrol: 5-bro 51.3 1.6E+02 0.0034 26.5 9.7 31 37-67 4-34 (199)
9 PF02453 Reticulon: Reticulon; 48.2 6 0.00013 33.7 0.0 20 98-117 149-168 (169)
10 PRK10263 DNA translocase FtsK; 47.3 1.3E+02 0.0029 35.5 10.3 21 2-22 67-90 (1355)
11 COG2270 Permeases of the major 45.7 52 0.0011 34.3 6.2 57 38-101 89-147 (438)
12 PRK06553 lipid A biosynthesis 45.1 1E+02 0.0022 29.6 7.8 33 37-77 19-51 (308)
13 PF10754 DUF2569: Protein of u 43.5 88 0.0019 27.2 6.6 84 7-94 58-148 (149)
14 PF11137 DUF2909: Protein of u 37.2 2E+02 0.0043 22.3 6.8 55 11-65 7-61 (63)
15 KOG1792 Reticulon [Intracellul 35.5 4E+02 0.0087 25.4 10.8 79 35-118 123-209 (230)
16 PF01277 Oleosin: Oleosin; In 34.6 51 0.0011 28.6 3.6 28 106-133 90-117 (118)
17 PF07856 Orai-1: Mediator of C 33.7 2.1E+02 0.0047 26.1 7.7 55 13-69 74-136 (175)
18 CHL00186 psaI photosystem I su 31.9 30 0.00066 24.2 1.4 22 1-22 1-22 (36)
19 PRK13700 conjugal transfer pro 31.3 3.7E+02 0.0079 30.0 10.1 26 36-61 24-49 (732)
20 KOG0365 Beta subunit of farnes 29.0 48 0.001 34.0 2.9 16 37-52 98-113 (423)
21 PF02313 Fumarate_red_D: Fumar 28.7 37 0.0008 29.5 1.8 19 1-19 22-40 (118)
22 PRK13108 prolipoprotein diacyl 27.4 2.1E+02 0.0045 30.0 7.2 24 8-31 26-49 (460)
23 KOG0055 Multidrug/pheromone ex 27.0 2E+02 0.0043 33.9 7.5 53 5-57 667-726 (1228)
24 KOG1962 B-cell receptor-associ 26.3 3.5E+02 0.0076 25.8 7.9 31 43-74 1-33 (216)
25 COG2832 Uncharacterized protei 26.0 91 0.002 27.2 3.7 59 43-101 5-63 (119)
26 KOG3359 Dolichyl-phosphate-man 25.8 1.2E+02 0.0027 33.5 5.4 75 2-82 572-647 (723)
27 COG2928 Uncharacterized conser 25.6 70 0.0015 30.6 3.2 20 39-58 20-39 (222)
28 PTZ00233 variable surface prot 25.4 99 0.0021 32.9 4.5 67 79-145 4-74 (509)
29 COG5009 MrcA Membrane carboxyp 25.1 7.8E+02 0.017 27.9 11.2 64 64-127 97-168 (797)
30 PF09726 Macoilin: Transmembra 24.9 2.5E+02 0.0053 31.0 7.5 16 14-29 51-66 (697)
31 KOG4304 Transcriptional repres 24.7 2.1E+02 0.0045 27.6 6.2 40 82-121 23-63 (250)
32 COG2456 Uncharacterized conser 24.7 3.1E+02 0.0068 23.9 6.6 21 34-54 37-57 (121)
33 cd01053 AOX Alternative oxidas 24.7 45 0.00098 30.5 1.7 96 38-142 53-150 (168)
34 PF01733 Nucleoside_tran: Nucl 23.1 28 0.0006 33.2 0.0 38 17-61 162-202 (309)
35 PF14975 DUF4512: Domain of un 22.8 25 0.00054 29.1 -0.3 14 88-101 13-26 (88)
36 PF06570 DUF1129: Protein of u 22.4 1.3E+02 0.0028 27.3 4.2 16 38-53 144-159 (206)
37 PF08831 MHCassoc_trimer: Clas 22.4 70 0.0015 25.6 2.1 27 23-49 30-58 (72)
38 PRK09174 F0F1 ATP synthase sub 22.2 2.8E+02 0.0061 25.6 6.4 21 94-114 78-98 (204)
39 PF12273 RCR: Chitin synthesis 22.0 45 0.00097 28.3 1.1 10 44-53 2-11 (130)
40 PF12459 DUF3687: D-Ala-teicho 21.1 86 0.0019 22.7 2.2 25 67-91 16-41 (42)
41 TIGR01257 rim_protein retinal- 21.0 1.6E+02 0.0035 36.7 5.7 51 6-57 1682-1737(2272)
42 PF08285 DPM3: Dolichol-phosph 21.0 3.9E+02 0.0085 21.9 6.3 37 37-73 4-49 (91)
43 PF10192 GpcrRhopsn4: Rhodopsi 20.9 6.9E+02 0.015 23.3 8.9 40 37-76 206-245 (257)
44 KOG3875 Peroxisomal biogenesis 20.7 3.1E+02 0.0067 27.9 6.6 59 6-64 129-188 (362)
45 PF05529 Bap31: B-cell recepto 20.5 1E+02 0.0022 27.6 3.0 25 42-67 3-27 (192)
46 PRK00247 putative inner membra 20.3 8.7E+02 0.019 25.4 10.0 14 99-112 285-298 (429)
47 PRK08943 lipid A biosynthesis 20.1 5.4E+02 0.012 24.7 8.1 27 42-73 22-48 (314)
48 TIGR02893 spore_yabQ spore cor 20.0 5.8E+02 0.013 22.1 11.0 78 12-105 17-97 (130)
No 1
>KOG1726 consensus HVA22/DP1 gene product-related proteins [Defense mechanisms]
Probab=100.00 E-value=7.4e-41 Score=307.88 Aligned_cols=159 Identities=43% Similarity=0.775 Sum_probs=150.3
Q ss_pred HHHHHHHHHHhHhhHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHhhhhccCCCc
Q 020811 6 LTRGLVMVFGYAYPAYECYKTVEKNKPEIEQLRFWCQYWILVAVLTVCERVGDAFISWVPMYSEAKLAFFVYLWYPKTKG 85 (321)
Q Consensus 6 l~rlL~llIG~lYPAY~SyKALe~~~pd~e~l~~WL~YWIVyalftv~E~~~d~~l~WIPfY~e~KLlFlIWL~lP~t~G 85 (321)
++++|++++|++||||+|||+++.+++|.+++++||+||||||+++++|+++|+|+.|||||+++|++|++||++|.++|
T Consensus 1 ~~~~lv~v~G~~yPAy~tyKavk~~~~~i~el~~W~~YWIv~A~~t~~e~~~d~~lsw~P~Y~e~Kl~fv~wL~~p~t~G 80 (225)
T KOG1726|consen 1 MIRLLVLVFGYAYPAYATYKAVKSNRKDIRELLRWMMYWIVFAALTVFETLTDFLLSWFPFYSEFKLAFVIWLLSPATKG 80 (225)
T ss_pred CeehHHHHHHHHhHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhccccccCc
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhccccchhhhhchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchhhhhcCC
Q 020811 86 TTYVYDSFFRPYVARHENEIDQNLLELRTRAGDMATIYWQKVASYGQTRVFEILQFIASQSTPRPRPAQPQQNARARQP 164 (321)
Q Consensus 86 A~yIY~~fI~P~L~k~E~eID~~L~~lr~ra~d~a~~y~q~a~~~gQ~~~~e~Lq~~asQs~~~~~~~~~~~~~~~~~~ 164 (321)
+.+||+.|++|++.+||.+||++|.++|+++++.+..+++++.+|+|..+.+++.+.+.|+.+++++..-.++......
T Consensus 81 ~~~vY~~f~~p~ls~~E~eid~~l~~~k~~~~~~a~~~~~r~l~~~~~~~~~a~~~~~~~~tp~~~~~~~~~~~~~~~~ 159 (225)
T KOG1726|consen 81 ASYVYRKFLRPFLSKHEEEIDRMLVEAKERVYDAAVSILKRALNYAQTYALEAAVFSQGQLTPRLQRSSSDQDLTTIPE 159 (225)
T ss_pred cHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccchhhhhhhhcCcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999887766655444433
No 2
>PF03134 TB2_DP1_HVA22: TB2/DP1, HVA22 family; InterPro: IPR004345 This family includes members from a wide variety of eukaryotes. It includes the TB2/DP1 (deleted in polyposis) protein which in human is deleted in severe forms of familial adenomatous polyposis, an autosomal dominant oncological inherited disease. The family also includes the plant protein of known similarity to TB2/DP1, the HVA22 abscisic acid-induced protein (e.g. Q07764 from SWISSPROT), which is thought to be a regulatory protein.
Probab=99.96 E-value=2.7e-29 Score=201.02 Aligned_cols=94 Identities=37% Similarity=0.843 Sum_probs=89.5
Q ss_pred hhhHHHHHHHHHHhHhhHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHhhhhccC
Q 020811 3 GSFLTRGLVMVFGYAYPAYECYKTVEKNKPEIEQLRFWCQYWILVAVLTVCERVGDAFISWVPMYSEAKLAFFVYLWYPK 82 (321)
Q Consensus 3 gsfl~rlL~llIG~lYPAY~SyKALe~~~pd~e~l~~WL~YWIVyalftv~E~~~d~~l~WIPfY~e~KLlFlIWL~lP~ 82 (321)
++++++++|+++|++||+|+|+|++++++ .++.++||+||+|||+++++|.+++.+++|+|+|+++|++|++||++|+
T Consensus 1 ~~~~~~~l~~~i~~~yP~~~s~kal~~~~--~~~~~~wL~YWiv~~~~~~~e~~~~~~l~~iP~y~~~K~~~~~wL~~p~ 78 (94)
T PF03134_consen 1 FGFIARLLCNLIGILYPAYKSFKALKSKD--KKDLKQWLTYWIVYGLFTLFESFLDFILSWIPFYYEFKLLFLVWLQLPQ 78 (94)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHhCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHcCC
Confidence 36899999999999999999999999975 4578999999999999999999999999999999999999999999999
Q ss_pred CCcchhhhccccchhh
Q 020811 83 TKGTTYVYDSFFRPYV 98 (321)
Q Consensus 83 t~GA~yIY~~fI~P~L 98 (321)
++||++||+++++|++
T Consensus 79 ~~Ga~~iy~~~i~P~~ 94 (94)
T PF03134_consen 79 FQGAEYIYDKFIRPFL 94 (94)
T ss_pred CCcHHHHHHHHccccC
Confidence 9999999999999985
No 3
>KOG1725 consensus Protein involved in membrane traffic (YOP1/TB2/DP1/HVA22 family) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=9.5e-29 Score=222.46 Aligned_cols=110 Identities=30% Similarity=0.602 Sum_probs=100.5
Q ss_pred ChhhhHHHHHHHHHHhHhhHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHhhhhc
Q 020811 1 MIGSFLTRGLVMVFGYAYPAYECYKTVEKNKPEIEQLRFWCQYWILVAVLTVCERVGDAFISWVPMYSEAKLAFFVYLWY 80 (321)
Q Consensus 1 Mvgsfl~rlL~llIG~lYPAY~SyKALe~~~pd~e~l~~WL~YWIVyalftv~E~~~d~~l~WIPfY~e~KLlFlIWL~l 80 (321)
|+.+-+++++|+++|++||+|+|+++||+..+ ++.++||.||||||+++++|.+.+.+++|+||||++|++|++||++
T Consensus 52 l~~g~~~~l~cn~ig~~yP~y~Sv~aIes~~k--~dD~~wL~YWivys~lslie~~~~~il~~iP~y~~~K~~fl~~l~l 129 (186)
T KOG1725|consen 52 LLFGSGGPLLCNLIGFLYPAYASVKAIESPSK--DDDTQWLTYWIVYSILSLVEFFSVAILSWIPFYWYAKLIFLLWLVL 129 (186)
T ss_pred HHhcccHHHHHHHHHHHHHHHHHHHhhhCCCC--cchHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhc
Confidence 34455788999999999999999999996543 3568999999999999999999999999999999999999999999
Q ss_pred cCCCcchhhhccccchhhhhchHHHHHHHHHH
Q 020811 81 PKTKGTTYVYDSFFRPYVARHENEIDQNLLEL 112 (321)
Q Consensus 81 P~t~GA~yIY~~fI~P~L~k~E~eID~~L~~l 112 (321)
|+++|+.+||+++++|++.+|..+||+..+.-
T Consensus 130 P~~~Ga~~iY~~~vrp~~~~~~~~~~~~~~~~ 161 (186)
T KOG1725|consen 130 PQFNGAAIIYNHIVRPFFLKHSREIDDIEDAN 161 (186)
T ss_pred cCCCCceeeechhhhhhhhhhhhhhhhhhhcc
Confidence 99999999999999999999999999886643
No 4
>COG5052 YOP1 Protein involved in membrane traffic [Intracellular trafficking and secretion]
Probab=99.81 E-value=6.2e-20 Score=164.31 Aligned_cols=107 Identities=25% Similarity=0.391 Sum_probs=94.9
Q ss_pred hhhHHHHHHHHHHhHhhHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHhhhhccC
Q 020811 3 GSFLTRGLVMVFGYAYPAYECYKTVEKNKPEIEQLRFWCQYWILVAVLTVCERVGDAFISWVPMYSEAKLAFFVYLWYPK 82 (321)
Q Consensus 3 gsfl~rlL~llIG~lYPAY~SyKALe~~~pd~e~l~~WL~YWIVyalftv~E~~~d~~l~WIPfY~e~KLlFlIWL~lP~ 82 (321)
++|.- ++.+++|+..|++.+.++++..++. +.++||.||+|+++++++|.++..+++|+||||..|.+|++|+..|+
T Consensus 56 lG~g~-ilt~~~~~~lP~~~~l~a~~~~n~~--dd~q~l~ywmV~~~lsaie~~s~~il~~vP~Y~~~K~vFllw~~~pr 132 (186)
T COG5052 56 LGFGL-ILTNVAGFSLPAQLSLVAFYTLNFM--DDTQLLTYWMVFGFLSAIEKYSGAILSKVPFYWTLKNVFLLWLLLPR 132 (186)
T ss_pred hhHHH-HHHHHHHHHccHHHHHHHHHcCCch--hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccc
Confidence 34443 7888999999999999999986543 34899999999999999999999999999999999999999999999
Q ss_pred CCcchhhhccccchhhhhchHH-HHHHHHHH
Q 020811 83 TKGTTYVYDSFFRPYVARHENE-IDQNLLEL 112 (321)
Q Consensus 83 t~GA~yIY~~fI~P~L~k~E~e-ID~~L~~l 112 (321)
|+||..||++++.|++++|--. ||+.+.+-
T Consensus 133 t~GA~~IY~~~i~p~~s~~~~~~IektV~~~ 163 (186)
T COG5052 133 TEGARIIYDDIIAPDVSDHGFRTIEKTVKNG 163 (186)
T ss_pred cCceeeeHHhhccccccHHHHHHHHHHHHhh
Confidence 9999999999999999998655 77776654
No 5
>PF10066 DUF2304: Uncharacterized conserved protein (DUF2304); InterPro: IPR019277 This entry represents hypothetical archaeal and bacterial proteins that have no known function.
Probab=81.16 E-value=14 Score=30.85 Aligned_cols=68 Identities=13% Similarity=0.304 Sum_probs=45.6
Q ss_pred HHHHHHhHhhHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHhhh
Q 020811 10 LVMVFGYAYPAYECYKTVEKNKPEIEQLRFWCQYWILVAVLTVCERVGDAFISWVPMYSEAKLAFFVYL 78 (321)
Q Consensus 10 L~llIG~lYPAY~SyKALe~~~pd~e~l~~WL~YWIVyalftv~E~~~d~~l~WIPfY~e~KLlFlIWL 78 (321)
+..+++++. .+-.++.+++++-+.++.-.|+..|++..++.++=.+++++-.++=+++-.-++|++-.
T Consensus 7 i~i~~~v~~-~~~ii~~vr~~~l~~~~~l~Wl~~~i~~l~~~ifP~~~~~vA~~lGi~~~~n~lf~~~i 74 (115)
T PF10066_consen 7 ILIIIAVLF-LLFIIRLVRKRKLRLKYSLLWLVFSIILLILSIFPNILDWVAKLLGIGRPPNLLFYLGI 74 (115)
T ss_pred HHHHHHHHH-HHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHCCCchhHHHHHHHH
Confidence 333334433 44456666665444566778999999999999888888887777766666655555443
No 6
>KOG1726 consensus HVA22/DP1 gene product-related proteins [Defense mechanisms]
Probab=77.16 E-value=14 Score=35.17 Aligned_cols=76 Identities=11% Similarity=-0.071 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHhhhhccCCCcchhhhccccchhhhhchHHHHHHHH
Q 020811 35 EQLRFWCQYWILVAVLTVCERVGDAFISWVPMYSEAKLAFFVYLWYPKTKGTTYVYDSFFRPYVARHENEIDQNLL 110 (321)
Q Consensus 35 e~l~~WL~YWIVyalftv~E~~~d~~l~WIPfY~e~KLlFlIWL~lP~t~GA~yIY~~fI~P~L~k~E~eID~~L~ 110 (321)
++...-+.+|....++..+..++.-++.|-++|..=+..+..|...|+.+++..+++....|....+...|-+.+.
T Consensus 97 E~eid~~l~~~k~~~~~~a~~~~~r~l~~~~~~~~~a~~~~~~~~tp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (225)
T KOG1726|consen 97 EEEIDRMLVEAKERVYDAAVSILKRALNYAQTYALEAAVFSQGQLTPRLQRSSSDQDLTTIPEESGKKAPDLDVLE 172 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccchhhhhhhhcCccccccccCCcccch
Confidence 4456778999999999999999999999999999999999999999999999999999888888776665555444
No 7
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=71.38 E-value=3.6 Score=44.70 Aligned_cols=9 Identities=22% Similarity=0.217 Sum_probs=5.2
Q ss_pred HHHHHHHHH
Q 020811 133 TRVFEILQF 141 (321)
Q Consensus 133 ~~~~e~Lq~ 141 (321)
+..+++|+.
T Consensus 191 ~~~~~~l~~ 199 (697)
T PF09726_consen 191 EFYMQLLQQ 199 (697)
T ss_pred HHHHHHHHH
Confidence 445566665
No 8
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=51.26 E-value=1.6e+02 Score=26.51 Aligned_cols=31 Identities=13% Similarity=0.071 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccchh
Q 020811 37 LRFWCQYWILVAVLTVCERVGDAFISWVPMY 67 (321)
Q Consensus 37 l~~WL~YWIVyalftv~E~~~d~~l~WIPfY 67 (321)
..+|+.||++-.++.++-.++.++....+|+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 34 (199)
T PF10112_consen 4 IIRFIFRWILGVLIAAITFLVSFFGFDHSFL 34 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 4567777776665655555544443333433
No 9
>PF02453 Reticulon: Reticulon; InterPro: IPR003388 Eukaryotic proteins of the reticulon (RTN) family all share an association with the endoplasmic reticulum (ER). Whereas amino-terminal regions are not related to one another, all reticulon proteins share a 200 amino acid residue region of sequence similarity at the C-terminal. This region contains two large hydrophobic regions separated by a 66 residue hydrophilic segment. The conserved hydrophobic C-terminal portion has been shown to play an essential role in the association of reticulons with the ER membrane. The hydrophobic portions are supposed to be membrane-embedded and the hydrophilic 66 residue localized to the lumenal/extracellular face of the membrane. Most reticulons have a di-lysine ER retention motif at the C-terminal. Because of their likely association with the rough as well as the smooth ER, the reticulons might play some role in transport processes or in regulation of intracellular calcium levels. It has been suggested that the reticulons may be serving as ER-associated channel-like complexes [, , , ].; GO: 0005783 endoplasmic reticulum; PDB: 2KO2_A 2JV5_A 2G31_A.
Probab=48.21 E-value=6 Score=33.72 Aligned_cols=20 Identities=20% Similarity=0.393 Sum_probs=0.0
Q ss_pred hhhchHHHHHHHHHHHHHHH
Q 020811 98 VARHENEIDQNLLELRTRAG 117 (321)
Q Consensus 98 L~k~E~eID~~L~~lr~ra~ 117 (321)
+.+|+.+||+.++.++++++
T Consensus 149 y~~~~~~Id~~~~~~~~~~~ 168 (169)
T PF02453_consen 149 YEKYQEEIDQYVAKVKEKVK 168 (169)
T ss_dssp --------------------
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 45789999999998877654
No 10
>PRK10263 DNA translocase FtsK; Provisional
Probab=47.26 E-value=1.3e+02 Score=35.48 Aligned_cols=21 Identities=29% Similarity=0.594 Sum_probs=14.9
Q ss_pred hhhhHHHHHHHHHHh---HhhHHH
Q 020811 2 IGSFLTRGLVMVFGY---AYPAYE 22 (321)
Q Consensus 2 vgsfl~rlL~llIG~---lYPAY~ 22 (321)
+|.+|+.+|..+||+ ++|.+.
T Consensus 67 VGA~LAD~L~~LFGl~AYLLP~LL 90 (1355)
T PRK10263 67 PGAWLADTLFFIFGVMAYTIPVII 90 (1355)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHH
Confidence 678888888888874 456544
No 11
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=45.69 E-value=52 Score=34.29 Aligned_cols=57 Identities=12% Similarity=0.322 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccch--hHHHHHHHHhhhhccCCCcchhhhccccchhhhhc
Q 020811 38 RFWCQYWILVAVLTVCERVGDAFISWVPM--YSEAKLAFFVYLWYPKTKGTTYVYDSFFRPYVARH 101 (321)
Q Consensus 38 ~~WL~YWIVyalftv~E~~~d~~l~WIPf--Y~e~KLlFlIWL~lP~t~GA~yIY~~fI~P~L~k~ 101 (321)
++|+..|++.++...+ .+.|+|- |+..+++|++-... .+.++...||.++.-+..+.
T Consensus 89 k~~~~~f~~i~i~~~~------~L~~i~~~s~~~~~l~~~il~~i-~~~~s~Vfyds~L~~~~~k~ 147 (438)
T COG2270 89 KKFFGFFTAIGIISTF------LLWFIPPGSYLLLLLLFLILASI-GFEFSNVFYDSMLPRLTTKD 147 (438)
T ss_pred chHHHHHHHHHHHHHH------HHHHhCCCchHHHHHHHHHHHHH-hcchhheehhhHhhhhcCcc
Confidence 5777777777666554 6677776 77777777765544 57899999999998777763
No 12
>PRK06553 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=45.06 E-value=1e+02 Score=29.58 Aligned_cols=33 Identities=9% Similarity=0.134 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHhh
Q 020811 37 LRFWCQYWILVAVLTVCERVGDAFISWVPMYSEAKLAFFVY 77 (321)
Q Consensus 37 l~~WL~YWIVyalftv~E~~~d~~l~WIPfY~e~KLlFlIW 77 (321)
+..|+.||++++++ +++.++|++....++.++.
T Consensus 19 ~~~~~~~~l~~~l~--------~~~~~LP~~~~~~~~~~l~ 51 (308)
T PRK06553 19 FAGWLVAQLVFGLL--------GLLRLFPADKAINFFGRLA 51 (308)
T ss_pred HHHHHHHHHHHHHH--------HHHHHCCHHHHHHHHHHHH
Confidence 44555555554332 3567889988776664443
No 13
>PF10754 DUF2569: Protein of unknown function (DUF2569); InterPro: IPR019690 This entry represents a protein that is conserved in bacteria. The function is not known, but several members are annotated as being YdgK or a homologue thereof and associated to the inner membrane. This signature also matches proteins that are described as transglutaminase-like enzymes, although this could not be confirmed.
Probab=43.50 E-value=88 Score=27.20 Aligned_cols=84 Identities=11% Similarity=0.201 Sum_probs=43.8
Q ss_pred HHHHHHHHHhHhhHHHHHHHHhccCccHHHHHHHHHHHHHHHHH-HHHHHHHH-HHh-----cccchhHHHHHHHHhhhh
Q 020811 7 TRGLVMVFGYAYPAYECYKTVEKNKPEIEQLRFWCQYWILVAVL-TVCERVGD-AFI-----SWVPMYSEAKLAFFVYLW 79 (321)
Q Consensus 7 ~rlL~llIG~lYPAY~SyKALe~~~pd~e~l~~WL~YWIVyalf-tv~E~~~d-~~l-----~WIPfY~e~KLlFlIWL~ 79 (321)
..++++++-.+|-.|..+...++++ ..-++..-|.+.+++ ..++.+.- .+. .-..+=..++.++..-+|
T Consensus 58 ~~~~~~~~~~~~~l~~~~lffkr~~----~~P~~~I~~ll~~v~~~~l~~~~~~~~~~~~~~d~~~i~~l~~~li~a~Iw 133 (149)
T PF10754_consen 58 FEVAINIAMWLFTLWLLYLFFKRKR----RFPKLYIIWLLISVLFIALDAFAFSYIFPSPVIDAEAIRELLRSLIAAAIW 133 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccc----hhHHHHHHHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHH
Confidence 3445555555666666666666542 233344444444444 66666542 111 111233455666666677
Q ss_pred ccCCCcchhhhcccc
Q 020811 80 YPKTKGTTYVYDSFF 94 (321)
Q Consensus 80 lP~t~GA~yIY~~fI 94 (321)
.|.+.-+..|=++|+
T Consensus 134 ipYf~~S~RVK~TFv 148 (149)
T PF10754_consen 134 IPYFLRSKRVKNTFV 148 (149)
T ss_pred HHHHHHhHHhhhhcc
Confidence 777666666655554
No 14
>PF11137 DUF2909: Protein of unknown function (DUF2909); InterPro: IPR021313 This is a family of proteins conserved in Proteobacteria of unknown function.
Probab=37.18 E-value=2e+02 Score=22.34 Aligned_cols=55 Identities=9% Similarity=0.148 Sum_probs=37.4
Q ss_pred HHHHHhHhhHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 020811 11 VMVFGYAYPAYECYKTVEKNKPEIEQLRFWCQYWILVAVLTVCERVGDAFISWVP 65 (321)
Q Consensus 11 ~llIG~lYPAY~SyKALe~~~pd~e~l~~WL~YWIVyalftv~E~~~d~~l~WIP 65 (321)
.+++.+++-.....-.+-+++.+.....+.|.+=|.+++..++=-++.+...|+|
T Consensus 7 ~lll~ii~sL~saL~~l~kd~~~~~rm~~~L~~RV~lS~~l~~lil~~~~~G~ip 61 (63)
T PF11137_consen 7 LLLLAIIASLFSALFFLVKDKGSSKRMVKALGRRVGLSALLFLLILIALYTGWIP 61 (63)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 3445555555555555555444455688899999999988888777777777773
No 15
>KOG1792 consensus Reticulon [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.54 E-value=4e+02 Score=25.40 Aligned_cols=79 Identities=15% Similarity=0.027 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHhhhhcc---CCCcchhhhccccc----hh-hhhchHHHH
Q 020811 35 EQLRFWCQYWILVAVLTVCERVGDAFISWVPMYSEAKLAFFVYLWYP---KTKGTTYVYDSFFR----PY-VARHENEID 106 (321)
Q Consensus 35 e~l~~WL~YWIVyalftv~E~~~d~~l~WIPfY~e~KLlFlIWL~lP---~t~GA~yIY~~fI~----P~-L~k~E~eID 106 (321)
.++..++.-|+-.++-.+.+..+.- . .-..+|+...+|.+.= .++|-+++|--++. |. +.+||..||
T Consensus 123 ~~~a~~~~~~in~~l~~l~~ia~~~--d---~~~~lk~~v~lw~lS~vGs~fn~lTll~ig~v~~~TvP~~YEky~d~ID 197 (230)
T KOG1792|consen 123 LALASSLRVEINQALSELRDIALGR--D---LKDFLKVAVGLWILSYVGSLFNFLTLLYIGLVLLFTVPVLYEKYEDQID 197 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc--c---HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccchhHHhHHHHh
Confidence 3467778888877777666654421 1 1134666666666543 35677777754433 33 468999999
Q ss_pred HHHHHHHHHHHh
Q 020811 107 QNLLELRTRAGD 118 (321)
Q Consensus 107 ~~L~~lr~ra~d 118 (321)
.+++.++.+.+.
T Consensus 198 ~~~~~~~~~~k~ 209 (230)
T KOG1792|consen 198 PYLGKVMEELKK 209 (230)
T ss_pred HHHHHHHHHHHH
Confidence 999999877654
No 16
>PF01277 Oleosin: Oleosin; InterPro: IPR000136 Oleosins [] are the proteinaceous components of plants' lipid storage bodies called oil bodies. Oil bodies are small droplets (0.2 to 1.5 mu-m in diameter) containing mostly triacylglycerol that are surrounded by a phospholipid/ oleosin annulus. Oleosins may have a structural role in stabilising the lipid body during dessication of the seed, by preventing coalescence of the oil. They may also provide recognition signals for specific lipase anchorage in lipolysis during seedling growth. Oleosins are found in the monolayer lipid/ water interface of oil bodies and probably interact with both the lipid and phospholipid moieties. Oleosins are proteins of 16 Kd to 24 Kd and are composed of three domains: an N-terminal hydrophilic region of variable length (from 30 to 60 residues); a central hydrophobic domain of about 70 residues and a C-terminal amphipathic region of variable length (from 60 to 100 residues). The central hydrophobic domain is proposed to be made up of beta-strand structure and to interact with the lipids []. It is the only domain whose sequence is conserved.; GO: 0012511 monolayer-surrounded lipid storage body, 0016021 integral to membrane
Probab=34.65 E-value=51 Score=28.58 Aligned_cols=28 Identities=29% Similarity=0.242 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 020811 106 DQNLLELRTRAGDMATIYWQKVASYGQT 133 (321)
Q Consensus 106 D~~L~~lr~ra~d~a~~y~q~a~~~gQ~ 133 (321)
-+.++..|.|..|.+....+|+.++||.
T Consensus 90 ~~q~d~Ak~ri~d~a~~v~~kake~gq~ 117 (118)
T PF01277_consen 90 PDQLDYAKRRIADTASYVGQKAKEVGQK 117 (118)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 4445888999999999888999999874
No 17
>PF07856 Orai-1: Mediator of CRAC channel activity; InterPro: IPR012446 This entry includes Drosophila Orai and human Orai1, Orai2 and Orai3. ORAI-1 GFP reporters are co-expressed with STIM-1 (ER CA(2+) sensors) in the gonad and intestine. The protein has four predicted transmembrane domains with a highly conserved region between TM2 ad TM3. This conserved domain is thought to function in channel regulation. ORAI1-related proteins are required for the production of the calcium channel, CRAC, along with STIM1-related proteins [].
Probab=33.73 E-value=2.1e+02 Score=26.06 Aligned_cols=55 Identities=13% Similarity=0.438 Sum_probs=31.3
Q ss_pred HHHhHhhHHHHHHHHhccCc----cHHHHHHHH-HHHHHH---HHHHHHHHHHHHHhcccchhHH
Q 020811 13 VFGYAYPAYECYKTVEKNKP----EIEQLRFWC-QYWILV---AVLTVCERVGDAFISWVPMYSE 69 (321)
Q Consensus 13 lIG~lYPAY~SyKALe~~~p----d~e~l~~WL-~YWIVy---alftv~E~~~d~~l~WIPfY~e 69 (321)
+..++.|..++..-+.+.++ ..+.+..|| .-|..- |++.++=.+ .+++||=||+.
T Consensus 74 isT~iL~~I~~~~~~~~~~~~~~sP~~~f~~~cE~~W~~s~~lGi~lFL~~l--~l~~WIKF~~~ 136 (175)
T PF07856_consen 74 ISTCILPSIEAVSFIHNYSPVPPSPHRRFHRYCELAWRFSTVLGIPLFLAEL--ALLGWIKFWDS 136 (175)
T ss_pred HHHHhHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHheeehhc
Confidence 34567899988887665322 123455554 235433 333333222 36789999988
No 18
>CHL00186 psaI photosystem I subunit VIII; Validated
Probab=31.85 E-value=30 Score=24.25 Aligned_cols=22 Identities=36% Similarity=0.466 Sum_probs=19.4
Q ss_pred ChhhhHHHHHHHHHHhHhhHHH
Q 020811 1 MIGSFLTRGLVMVFGYAYPAYE 22 (321)
Q Consensus 1 Mvgsfl~rlL~llIG~lYPAY~ 22 (321)
|..+++-.+++-++|+++||..
T Consensus 1 m~as~LPsI~VPlVGlvfPai~ 22 (36)
T CHL00186 1 MTASNLPSILVPLVGLVFPAIA 22 (36)
T ss_pred CccccCchhHHhHHHHHHHHHH
Confidence 6778888999999999999975
No 19
>PRK13700 conjugal transfer protein TraD; Provisional
Probab=31.29 E-value=3.7e+02 Score=30.03 Aligned_cols=26 Identities=15% Similarity=0.027 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 020811 36 QLRFWCQYWILVAVLTVCERVGDAFI 61 (321)
Q Consensus 36 ~l~~WL~YWIVyalftv~E~~~d~~l 61 (321)
++..|+.||+++.++.++-.++.+.+
T Consensus 24 qi~~~~~~~~~~~~~~~~~~~~~~~~ 49 (732)
T PRK13700 24 QIANIILYCLFIFFWILVGLVLWVKI 49 (732)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 57789999999877665544443333
No 20
>KOG0365 consensus Beta subunit of farnesyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=29.03 E-value=48 Score=34.02 Aligned_cols=16 Identities=38% Similarity=0.827 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 020811 37 LRFWCQYWILVAVLTV 52 (321)
Q Consensus 37 l~~WL~YWIVyalftv 52 (321)
-+.||.|||+-++-.+
T Consensus 98 SR~Wm~YWil~sl~lL 113 (423)
T KOG0365|consen 98 SRPWMCYWILNSLALL 113 (423)
T ss_pred CcchhHHHHHHHHHHh
Confidence 3789999999887653
No 21
>PF02313 Fumarate_red_D: Fumarate reductase subunit D; InterPro: IPR003418 Fumarate reductase is a membrane-bound flavoenzyme consisting of four subunits, A-B. A and B comprise the membrane-extrinsic catalytic domain and C and D link the catalytic centres to the electron-transport chain. This family consists of the 13kDa hydrophobic subunit D. This component may be required to anchor the catalytic components of the fumarate reductase complex to the cytoplasmic membrane.; GO: 0006106 fumarate metabolic process, 0016020 membrane; PDB: 3P4R_P 1KF6_P 3P4Q_P 3P4S_D 3CIR_P 2B76_D 1L0V_P 3P4P_D 1KFY_P.
Probab=28.67 E-value=37 Score=29.48 Aligned_cols=19 Identities=21% Similarity=0.527 Sum_probs=16.2
Q ss_pred ChhhhHHHHHHHHHHhHhh
Q 020811 1 MIGSFLTRGLVMVFGYAYP 19 (321)
Q Consensus 1 Mvgsfl~rlL~llIG~lYP 19 (321)
|+..++...+++++|++.|
T Consensus 22 m~~Al~~PvlILi~GillP 40 (118)
T PF02313_consen 22 MWSALFGPVLILILGILLP 40 (118)
T ss_dssp HHHHHTHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 5677888889999999998
No 22
>PRK13108 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=27.36 E-value=2.1e+02 Score=30.02 Aligned_cols=24 Identities=4% Similarity=0.025 Sum_probs=16.1
Q ss_pred HHHHHHHHhHhhHHHHHHHHhccC
Q 020811 8 RGLVMVFGYAYPAYECYKTVEKNK 31 (321)
Q Consensus 8 rlL~llIG~lYPAY~SyKALe~~~ 31 (321)
..|+.++|++.=.+-..+..++..
T Consensus 26 YGl~ialGil~a~~l~~r~~kr~g 49 (460)
T PRK13108 26 YAVCVITGIIVALLIGDRRLTARG 49 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcC
Confidence 357777888876666666666543
No 23
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=26.98 E-value=2e+02 Score=33.87 Aligned_cols=53 Identities=11% Similarity=0.241 Sum_probs=33.8
Q ss_pred hHHHHHHHHHHhHhhHHHH-----HHHHhccCcc--HHHHHHHHHHHHHHHHHHHHHHHH
Q 020811 5 FLTRGLVMVFGYAYPAYEC-----YKTVEKNKPE--IEQLRFWCQYWILVAVLTVCERVG 57 (321)
Q Consensus 5 fl~rlL~llIG~lYPAY~S-----yKALe~~~pd--~e~l~~WL~YWIVyalftv~E~~~ 57 (321)
+++.+...+.|..||+|.- |+++...++| .++..+|...|++.|++..+-+++
T Consensus 667 ~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~~~~~~~~~~~~~al~f~~l~~~~~i~~~~ 726 (1228)
T KOG0055|consen 667 LLGSLGAAIRGATYPLFAYVFSQVLEAFYPPDDDELKREVRAWALIFLGLGIVSGITNFL 726 (1228)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556678899999864 4444433322 223456999999988887665544
No 24
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=26.26 E-value=3.5e+02 Score=25.76 Aligned_cols=31 Identities=23% Similarity=0.264 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHh--cccchhHHHHHHH
Q 020811 43 YWILVAVLTVCERVGDAFI--SWVPMYSEAKLAF 74 (321)
Q Consensus 43 YWIVyalftv~E~~~d~~l--~WIPfY~e~KLlF 74 (321)
||.+...+.++|-++-+++ .| |.+..-+++.
T Consensus 1 ~~tlvf~iL~~Eial~~iL~Lpi-p~r~~~~~~~ 33 (216)
T KOG1962|consen 1 YWTLVFTILYAEIALFLILLLPI-PPRRRRKIFK 33 (216)
T ss_pred CHHHHHHHHHHHHHHHHHHHcCC-CHHHHHHHHH
Confidence 7999999999999875443 44 7665555443
No 25
>COG2832 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.95 E-value=91 Score=27.16 Aligned_cols=59 Identities=17% Similarity=0.267 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHhhhhccCCCcchhhhccccchhhhhc
Q 020811 43 YWILVAVLTVCERVGDAFISWVPMYSEAKLAFFVYLWYPKTKGTTYVYDSFFRPYVARH 101 (321)
Q Consensus 43 YWIVyalftv~E~~~d~~l~WIPfY~e~KLlFlIWL~lP~t~GA~yIY~~fI~P~L~k~ 101 (321)
-|++.|++.+.=-+++.|+..+|-=-.+=+.+.+|.=....--+=.+++.++.|++.++
T Consensus 5 i~i~iGfl~l~LGIiGifLPlLPTTPFlLLaa~cFaRsSpRf~~WLl~~~~fg~~v~~~ 63 (119)
T COG2832 5 IYIILGFLSLALGIIGIFLPLLPTTPFLLLAAACFARSSPRFHAWLLRHKYFGPYVRDW 63 (119)
T ss_pred HHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHcCCcHHHHHHHcCchhhHHHHHH
Confidence 37889999999888899999887544444443333311111122334445566666554
No 26
>KOG3359 consensus Dolichyl-phosphate-mannose:protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=25.83 E-value=1.2e+02 Score=33.50 Aligned_cols=75 Identities=8% Similarity=0.118 Sum_probs=47.3
Q ss_pred hhhhHHHHHHHHHHhHhhHHHHHHHHhccCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHhhhhc
Q 020811 2 IGSFLTRGLVMVFGYAYPAYECYKTVEKNKP-EIEQLRFWCQYWILVAVLTVCERVGDAFISWVPMYSEAKLAFFVYLWY 80 (321)
Q Consensus 2 vgsfl~rlL~llIG~lYPAY~SyKALe~~~p-d~e~l~~WL~YWIVyalftv~E~~~d~~l~WIPfY~e~KLlFlIWL~l 80 (321)
+|..+.--...+.=++|+....+.++.-++. ..++-..|=.+ ....+..++.|++.++||+..-+.+| +...+
T Consensus 572 lGNp~~Ww~~~~~v~if~~v~~~~l~~wqr~~~~~~~~~~~~~-----~~~~~~~~lgW~lHY~Pff~m~r~lf-lhHYl 645 (723)
T KOG3359|consen 572 LGNPVIWWSSTLSLAIFALVVLFRLLRWQRGTILSDPQIWRVH-----VQAGFFFFLGWALHYLPFFLMGRVLF-LHHYL 645 (723)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHhccCCccCchhhhhHH-----hHHHHHHHHHHHHHhhhHHhhhhhhh-hhhhh
Confidence 4444444444444467888888888886543 11122223222 23335667789999999999988888 77777
Q ss_pred cC
Q 020811 81 PK 82 (321)
Q Consensus 81 P~ 82 (321)
|-
T Consensus 646 PA 647 (723)
T KOG3359|consen 646 PA 647 (723)
T ss_pred HH
Confidence 75
No 27
>COG2928 Uncharacterized conserved protein [Function unknown]
Probab=25.64 E-value=70 Score=30.57 Aligned_cols=20 Identities=5% Similarity=0.288 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 020811 39 FWCQYWILVAVLTVCERVGD 58 (321)
Q Consensus 39 ~WL~YWIVyalftv~E~~~d 58 (321)
-|+++|++..++.+++.++.
T Consensus 20 laiT~~vv~~i~~~l~~~~~ 39 (222)
T COG2928 20 LAITLWVVSWIFGLLDQFVG 39 (222)
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 46788888888888888776
No 28
>PTZ00233 variable surface protein Vir18; Provisional
Probab=25.38 E-value=99 Score=32.87 Aligned_cols=67 Identities=10% Similarity=0.178 Sum_probs=49.2
Q ss_pred hccCCCcchhhhccccchh----hhhchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 020811 79 WYPKTKGTTYVYDSFFRPY----VARHENEIDQNLLELRTRAGDMATIYWQKVASYGQTRVFEILQFIASQ 145 (321)
Q Consensus 79 ~lP~t~GA~yIY~~fI~P~----L~k~E~eID~~L~~lr~ra~d~a~~y~q~a~~~gQ~~~~e~Lq~~asQ 145 (321)
|+..++++.-+|++|-.+- +..+..+|++.|+++..+-......-|++...|+..+=.||-.|+-..
T Consensus 4 ~~~~~~~~~n~yq~~~~~~Cin~Y~~~K~EIEqkId~f~k~~~~nFykew~~I~k~I~~KN~ELK~Cy~~~ 74 (509)
T PTZ00233 4 PFRGFNRIINLYQTYKTAPCMNTYSTLKSDIEQKIDDFNKATHTNIYTQWDQLNKYIITKDAELKHCYDNG 74 (509)
T ss_pred ccccchhHHHHHHhhcccchhHhHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhhhhhhhhhhcC
Confidence 3445555667777777553 345689999999999887777788889999999888877776665433
No 29
>COG5009 MrcA Membrane carboxypeptidase/penicillin-binding protein [Cell envelope biogenesis, outer membrane]
Probab=25.14 E-value=7.8e+02 Score=27.87 Aligned_cols=64 Identities=13% Similarity=0.239 Sum_probs=49.2
Q ss_pred cchhHHHHHHHHhhhhccCCCcchhhhccccchhhhhchHHHHHHHHHHH-------H-HHHhHHHHHHHHH
Q 020811 64 VPMYSEAKLAFFVYLWYPKTKGTTYVYDSFFRPYVARHENEIDQNLLELR-------T-RAGDMATIYWQKV 127 (321)
Q Consensus 64 IPfY~e~KLlFlIWL~lP~t~GA~yIY~~fI~P~L~k~E~eID~~L~~lr-------~-ra~d~a~~y~q~a 127 (321)
|=+..+++.+|....-.-...|+.-|=.-+-+-||...|..++++|.++= . ...++...|+.+.
T Consensus 97 vD~~GI~RA~~~nl~~~~~~~GaSTITQQvAkNf~Ltsertl~RKikEa~LA~~IE~~lsKdeILELYLNkI 168 (797)
T COG5009 97 VDPIGIFRAAFVNLTNGGRSQGASTITQQVAKNFFLSSERTLERKIKEALLAIRIEQSLSKDEILELYLNKI 168 (797)
T ss_pred cCHHHHHHHHHHHHhcCCccCCccHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHH
Confidence 45567888888887777678899999999999999999999999988751 1 1234666777663
No 30
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=24.93 E-value=2.5e+02 Score=30.97 Aligned_cols=16 Identities=25% Similarity=0.571 Sum_probs=13.1
Q ss_pred HHhHhhHHHHHHHHhc
Q 020811 14 FGYAYPAYECYKTVEK 29 (321)
Q Consensus 14 IG~lYPAY~SyKALe~ 29 (321)
|-|+||.|..++.+..
T Consensus 51 ~e~~~p~wl~~~~~~~ 66 (697)
T PF09726_consen 51 FEYLWPFWLLLRSVYD 66 (697)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3479999999998875
No 31
>KOG4304 consensus Transcriptional repressors of the hairy/E(spl) family (contains HLH) [Transcription]
Probab=24.74 E-value=2.1e+02 Score=27.56 Aligned_cols=40 Identities=18% Similarity=0.282 Sum_probs=33.0
Q ss_pred CCCcchhhhccccchhhhhc-hHHHHHHHHHHHHHHHhHHH
Q 020811 82 KTKGTTYVYDSFFRPYVARH-ENEIDQNLLELRTRAGDMAT 121 (321)
Q Consensus 82 ~t~GA~yIY~~fI~P~L~k~-E~eID~~L~~lr~ra~d~a~ 121 (321)
...+..+.|++.-+|++.++ ...|.+.|++||+-.-+...
T Consensus 23 ~~~~~~~~~rk~~Kpl~EKkRRaRIN~~L~eLK~Li~e~~~ 63 (250)
T KOG4304|consen 23 ERSSKTRQYRKVRKPLLEKKRRARINRCLDELKDLIPEALK 63 (250)
T ss_pred CcchhhHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35688999999999999876 78899999999986655443
No 32
>COG2456 Uncharacterized conserved protein [Function unknown]
Probab=24.70 E-value=3.1e+02 Score=23.86 Aligned_cols=21 Identities=24% Similarity=0.896 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 020811 34 IEQLRFWCQYWILVAVLTVCE 54 (321)
Q Consensus 34 ~e~l~~WL~YWIVyalftv~E 54 (321)
..++..|..+|++.-+|.++-
T Consensus 37 ~~~ll~W~~~wv~vlifal~P 57 (121)
T COG2456 37 LSDLLFWEAFWVFVLIFALFP 57 (121)
T ss_pred ccchHHHHHHHHHHHHHHhcc
Confidence 457899999999887776653
No 33
>cd01053 AOX Alternative oxidase, ferritin-like diiron-binding domain. Alternative oxidase (AOX) is a mitochondrial ubiquinol oxidase found in plants and some fungi and protists. AOX is a member of the ferritin-like diiron-carboxylate superfamily. The plant mitochondrial protein alternative oxidase catalyses dioxygen dependent ubiquinol oxidation to yield ubiquinone and water. AOX is a cyanide-resistant, salicylhydroxamic acid-sensitive oxidase that transfers electrons from ubiquinol to oxygen, bypassing the cytochrome chain. AOX has been proposed to contain a hydroxo-bridged diiron center within a four-helix bundle and a proximal redox-active tyrosine residue. AOX is proposed to be peripherally associated with the matrix side of the inner mitochondrial membrane. Fungal and protozoan AOXs generally exist as monomers. In plants, AOX is dimeric. Pyruvate is an allosteric activator of plant AOX involved in the reversible inactivation of the enzyme though the formation of an intermolecular
Probab=24.65 E-value=45 Score=30.49 Aligned_cols=96 Identities=17% Similarity=0.190 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHhhhhccCC--CcchhhhccccchhhhhchHHHHHHHHHHHHH
Q 020811 38 RFWCQYWILVAVLTVCERVGDAFISWVPMYSEAKLAFFVYLWYPKT--KGTTYVYDSFFRPYVARHENEIDQNLLELRTR 115 (321)
Q Consensus 38 ~~WL~YWIVyalftv~E~~~d~~l~WIPfY~e~KLlFlIWL~lP~t--~GA~yIY~~fI~P~L~k~E~eID~~L~~lr~r 115 (321)
+.-|..++-++--+.++..+-.....+ ||+ ++|++||+.|++ +-.+||=..-+. .+.++-.+||..... ...
T Consensus 53 rmHLltf~~l~~p~~~~r~~v~~~q~v-fy~---~~~~~YlisPr~ahrfvgylEEeAV~-TYt~~L~~id~g~~~-~~p 126 (168)
T cd01053 53 RMHLLIFEELGGPGWWFRRFVAQHQAV-FYN---AYFLLYLISPRLAHRFVGYLEEEAVD-TYTEFLKDIEEGLKP-DLP 126 (168)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHH-HHH---HHHHHHHhhHHHHHHHHHhhhHHHHH-HHHHHHHHhhccccC-CCC
Confidence 334444444444455555443333444 554 468889999974 222222111111 111222344443332 224
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 020811 116 AGDMATIYWQKVASYGQTRVFEILQFI 142 (321)
Q Consensus 116 a~d~a~~y~q~a~~~gQ~~~~e~Lq~~ 142 (321)
+=++|..||+.-. ..++.|++..+
T Consensus 127 aP~iAi~Yw~l~~---~atl~Dvi~~I 150 (168)
T cd01053 127 APEIAIEYYRLGE---DATLYDVFVAI 150 (168)
T ss_pred CCHHHHHHhCCCC---CCcHHHHHHHH
Confidence 5568899996432 34556655544
No 34
>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs. Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.
Probab=23.05 E-value=28 Score=33.17 Aligned_cols=38 Identities=16% Similarity=0.458 Sum_probs=0.0
Q ss_pred HhhHHHHHHHHhccCccHHHHHHHHHHHH---HHHHHHHHHHHHHHHh
Q 020811 17 AYPAYECYKTVEKNKPEIEQLRFWCQYWI---LVAVLTVCERVGDAFI 61 (321)
Q Consensus 17 lYPAY~SyKALe~~~pd~e~l~~WL~YWI---Vyalftv~E~~~d~~l 61 (321)
+||+. +.. ++... .-.|-.||+ ++.+|.+.|.+...+-
T Consensus 162 ~FP~i-t~~-v~s~~-----~~~~~~~f~pv~~fl~Fn~gD~iGR~l~ 202 (309)
T PF01733_consen 162 VFPGI-TSA-VQSSN-----NPDWSSYFVPVVLFLLFNLGDFIGRFLA 202 (309)
T ss_dssp ------------------------------------------------
T ss_pred eccce-eee-eeccc-----cCCCccHHHHHHHHHHHHHHHHhcchhc
Confidence 79998 332 33321 123667775 5778888887765543
No 35
>PF14975 DUF4512: Domain of unknown function (DUF4512)
Probab=22.82 E-value=25 Score=29.06 Aligned_cols=14 Identities=29% Similarity=0.985 Sum_probs=10.9
Q ss_pred hhhccccchhhhhc
Q 020811 88 YVYDSFFRPYVARH 101 (321)
Q Consensus 88 yIY~~fI~P~L~k~ 101 (321)
+||++||.|++.+.
T Consensus 13 wIykkFlqP~i~~~ 26 (88)
T PF14975_consen 13 WIYKKFLQPYIYPF 26 (88)
T ss_pred HHHHHHHHHHHHHH
Confidence 57889999987653
No 36
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=22.43 E-value=1.3e+02 Score=27.34 Aligned_cols=16 Identities=19% Similarity=0.492 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 020811 38 RFWCQYWILVAVLTVC 53 (321)
Q Consensus 38 ~~WL~YWIVyalftv~ 53 (321)
..|..||++..++.++
T Consensus 144 ~~~~k~~~~~~~~~~~ 159 (206)
T PF06570_consen 144 PSWWKYILISVLAMVL 159 (206)
T ss_pred cHHHHHHHHHHHHHHH
Confidence 4566666655544443
No 37
>PF08831 MHCassoc_trimer: Class II MHC-associated invariant chain trimerisation domain; InterPro: IPR011988 This entry represents the trimerisation domain of the MHC class II-associated invariant chain (Ii). Ii plays a critical role in the assembly of the MHC, as well as in MHC II antigen processing by stabilising peptide-free class II alpha/beta heterodimers in a complex soon after their synthesis and directing transport of the complex from the endoplasmic reticulum to compartments where peptide loading of class II takes place []. In antigen-presenting cells (APCs), loading of MHC II molecules with peptides is regulated by Ii, which blocks MHC II antigen-binding sites in pre-endosomal compartments []. Several molecules then act upon MHC II molecules in endosomes to facilitate peptide loading: Ii-degrading proteases, the peptide exchange factor, human leukocyte antigen-DM (HLA-DM), and its modulator, HLA-DO (DO). The Invariant chain contains a single transmembrane domain. Ii first assembles into a trimer and then associates with three class II alpha/beta MHC heterodimers. Although the membrane-proximal region of the Ii luminal domain is structurally disordered, the C-terminal segment of the luminal domain is largely alpha-helical and contains a major interaction site for the Ii trimer []. More information about these proteins can be found at Protein of the Month: MHC [].; GO: 0042289 MHC class II protein binding, 0006886 intracellular protein transport, 0006955 immune response, 0019882 antigen processing and presentation, 0016020 membrane; PDB: 1IIE_C.
Probab=22.41 E-value=70 Score=25.62 Aligned_cols=27 Identities=15% Similarity=0.517 Sum_probs=17.3
Q ss_pred HHHHHhccC--ccHHHHHHHHHHHHHHHH
Q 020811 23 CYKTVEKNK--PEIEQLRFWCQYWILVAV 49 (321)
Q Consensus 23 SyKALe~~~--pd~e~l~~WL~YWIVyal 49 (321)
-++.|++.- .|=.....|+.||.+|-+
T Consensus 30 NL~~LK~~M~~~~Wk~FEsWM~~WLlFqM 58 (72)
T PF08831_consen 30 NLKHLKNQMNESDWKSFESWMHQWLLFQM 58 (72)
T ss_dssp HHHHHHHHS-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcchhhHHHHHHHHHHHHHHHH
Confidence 345566432 122457899999999854
No 38
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=22.18 E-value=2.8e+02 Score=25.62 Aligned_cols=21 Identities=14% Similarity=0.200 Sum_probs=14.7
Q ss_pred cchhhhhchHHHHHHHHHHHH
Q 020811 94 FRPYVARHENEIDQNLLELRT 114 (321)
Q Consensus 94 I~P~L~k~E~eID~~L~~lr~ 114 (321)
|.-+|...+..|..-|.+...
T Consensus 78 I~~vLe~R~~~I~~~L~~Ae~ 98 (204)
T PRK09174 78 IGGIIETRRDRIAQDLDQAAR 98 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 555667777888888777644
No 39
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=22.03 E-value=45 Score=28.26 Aligned_cols=10 Identities=40% Similarity=1.099 Sum_probs=5.5
Q ss_pred HHHHHHHHHH
Q 020811 44 WILVAVLTVC 53 (321)
Q Consensus 44 WIVyalftv~ 53 (321)
|++|++|.++
T Consensus 2 W~l~~iii~~ 11 (130)
T PF12273_consen 2 WVLFAIIIVA 11 (130)
T ss_pred eeeHHHHHHH
Confidence 5666555544
No 40
>PF12459 DUF3687: D-Ala-teichoic acid biosynthesis protein; InterPro: IPR021008 Proteins in this family are bacterial proteins of approximately 50 amino acids in length. There are two completely conserved residues (L and Y) that may be functionally important. A number of entries are annotated as D-Ala-teichoic acid biosynthesis protein; however there is no direct evidence to support this annotation.
Probab=21.14 E-value=86 Score=22.66 Aligned_cols=25 Identities=20% Similarity=0.413 Sum_probs=16.7
Q ss_pred hHHHHHHHHhhhhc-cCCCcchhhhc
Q 020811 67 YSEAKLAFFVYLWY-PKTKGTTYVYD 91 (321)
Q Consensus 67 Y~e~KLlFlIWL~l-P~t~GA~yIY~ 91 (321)
+|.+=++.++||.. -..+++.+||+
T Consensus 16 fYf~Ill~L~ylYgy~g~~~~~FIYN 41 (42)
T PF12459_consen 16 FYFAILLALIYLYGYSGIGQGPFIYN 41 (42)
T ss_pred HHHHHHHHHHHHHhcCCCCCCCeecC
Confidence 34455666777766 45567889986
No 41
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=21.04 E-value=1.6e+02 Score=36.71 Aligned_cols=51 Identities=10% Similarity=0.242 Sum_probs=25.4
Q ss_pred HHHHHHHHHHhHhhHHHHHHHHhccCccHHHHH-----HHHHHHHHHHHHHHHHHHH
Q 020811 6 LTRGLVMVFGYAYPAYECYKTVEKNKPEIEQLR-----FWCQYWILVAVLTVCERVG 57 (321)
Q Consensus 6 l~rlL~llIG~lYPAY~SyKALe~~~pd~e~l~-----~WL~YWIVyalftv~E~~~ 57 (321)
++-++++.++++-..|..|-+-|+... .+.++ .-+.||+...+|-++=+++
T Consensus 1682 iai~ii~~~sfi~asfv~~~V~ER~sk-aK~lQ~vSGv~~~~YWls~fl~D~~~y~i 1737 (2272)
T TIGR01257 1682 VAICVIFAMSFVPASFVLYLIQERVNK-AKHLQFISGVSPTTYWLTNFLWDIMNYAV 1737 (2272)
T ss_pred HHHHHHHHHHHHHHHHheeeehHHhhh-HHHHHHHhCCCcHHHHHHHHHHHHHHHHH
Confidence 343444455556666666666665432 12221 1256776665555444433
No 42
>PF08285 DPM3: Dolichol-phosphate mannosyltransferase subunit 3 (DPM3); InterPro: IPR013174 This family corresponds to subunit 3 of dolichol-phosphate mannosyltransferase, an enzyme which generates mannosyl donors for glycosylphosphatidylinositols, N-glycan and protein O- and C-mannosylation. DPM3 is an integral membrane protein and plays a role in stabilising the dolichol-phosphate mannosyl transferase complex [].
Probab=20.97 E-value=3.9e+02 Score=21.93 Aligned_cols=37 Identities=19% Similarity=0.433 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHH---------HHHHHhcccchhHHHHHH
Q 020811 37 LRFWCQYWILVAVLTVCER---------VGDAFISWVPMYSEAKLA 73 (321)
Q Consensus 37 l~~WL~YWIVyalftv~E~---------~~d~~l~WIPfY~e~KLl 73 (321)
..+|+.+-++++.+.+.=. ..+-++.++|+|..+=+.
T Consensus 4 ~~~~l~~~~~l~~~w~~l~~~~~~~~~~~~~~ii~~lP~~~Lv~fG 49 (91)
T PF08285_consen 4 LQQWLSALLLLSALWLALLLGLLPLPPEPQQEIIPYLPFYALVSFG 49 (91)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCCCchhHHHHHHHhhHHHHHHHH
Confidence 4567776655555544322 234466778887665443
No 43
>PF10192 GpcrRhopsn4: Rhodopsin-like GPCR transmembrane domain; InterPro: IPR019336 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). This region of 270 amino acids is the seven transmembrane alpha-helical domains included within five GPCRRHODOPSN4 motifs of a G-protein-coupled-receptor (GPCR) protein, conserved from nematodes to humans [].
Probab=20.87 E-value=6.9e+02 Score=23.35 Aligned_cols=40 Identities=13% Similarity=0.111 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHh
Q 020811 37 LRFWCQYWILVAVLTVCERVGDAFISWVPMYSEAKLAFFV 76 (321)
Q Consensus 37 l~~WL~YWIVyalftv~E~~~d~~l~WIPfY~e~KLlFlI 76 (321)
.+..+.+.+++.+|.+...+.-.+-..++-|+--|++..+
T Consensus 206 ~~Fy~~f~~~~~lWFl~~Pv~~~ia~~v~~~~R~kvv~~~ 245 (257)
T PF10192_consen 206 RKFYLPFGIIFSLWFLSLPVIVIIAHFVDPWVREKVVTGG 245 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 3455555555555555555544443444555555554443
No 44
>KOG3875 consensus Peroxisomal biogenesis protein peroxin [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.66 E-value=3.1e+02 Score=27.92 Aligned_cols=59 Identities=7% Similarity=0.049 Sum_probs=37.0
Q ss_pred HHHHHHHHHHhHhhHHHHHHHHhccCccHHHH-HHHHHHHHHHHHHHHHHHHHHHHhccc
Q 020811 6 LTRGLVMVFGYAYPAYECYKTVEKNKPEIEQL-RFWCQYWILVAVLTVCERVGDAFISWV 64 (321)
Q Consensus 6 l~rlL~llIG~lYPAY~SyKALe~~~pd~e~l-~~WL~YWIVyalftv~E~~~d~~l~WI 64 (321)
++.+..++=....-+|.||+++-.-...-..| ...-.+|.+|++|-.+-.+...++.||
T Consensus 129 v~siA~MLeST~~A~~~SFravi~Vae~F~rLKs~l~s~f~~fAl~r~lk~lyR~~l~~L 188 (362)
T KOG3875|consen 129 VGSIAQMLESTFMAVHNSFRAVISVAENFGRLKSSLGSFFGIFALFRRLKILYRLLLKML 188 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45555666667788888888876421111112 345678888888888875555555554
No 45
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=20.48 E-value=1e+02 Score=27.62 Aligned_cols=25 Identities=24% Similarity=0.230 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccchh
Q 020811 42 QYWILVAVLTVCERVGDAFISWVPMY 67 (321)
Q Consensus 42 ~YWIVyalftv~E~~~d~~l~WIPfY 67 (321)
.||.+...+.++|-++-+++ .+||-
T Consensus 3 l~~~lvf~~L~~Ei~~~~lL-~lPlp 27 (192)
T PF05529_consen 3 LQWSLVFGLLYAEIAVLLLL-VLPLP 27 (192)
T ss_pred cHHHHHHHHHHHHHHHHHHH-HHhCC
Confidence 48888888888998775544 44543
No 46
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=20.27 E-value=8.7e+02 Score=25.38 Aligned_cols=14 Identities=14% Similarity=0.060 Sum_probs=6.2
Q ss_pred hhchHHHHHHHHHH
Q 020811 99 ARHENEIDQNLLEL 112 (321)
Q Consensus 99 ~k~E~eID~~L~~l 112 (321)
.+|...+++..+..
T Consensus 285 ~~~~~~~~~~~~~~ 298 (429)
T PRK00247 285 EHHAEQRAQYREKQ 298 (429)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444433
No 47
>PRK08943 lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase; Validated
Probab=20.07 E-value=5.4e+02 Score=24.68 Aligned_cols=27 Identities=22% Similarity=0.219 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccchhHHHHHH
Q 020811 42 QYWILVAVLTVCERVGDAFISWVPMYSEAKLA 73 (321)
Q Consensus 42 ~YWIVyalftv~E~~~d~~l~WIPfY~e~KLl 73 (321)
.||+++.++.+ -+++.++|.-...+++
T Consensus 22 ~~~~~~~~~~l-----~~~~~~LP~~~~~~l~ 48 (314)
T PRK08943 22 RYWGTWLGIGA-----LAGLALMPPRLRDPLA 48 (314)
T ss_pred HHHHHHHHHHH-----HHHHHHCCHHHHHHHH
Confidence 88888776642 2456777865554443
No 48
>TIGR02893 spore_yabQ spore cortex biosynthesis protein YabQ. YabQ, a protein predicted to span the membrane several times, is found in exactly those genomes whose species perform sporulation in the style of Bacillus subtilis, Clostridium tetani, and others of the Firmicutes. Mutation of this sigma(E)-dependent gene blocks development of the spore cortex. The length of the C-terminal region, including some hydrophobic regions, is rather variable between members.
Probab=20.05 E-value=5.8e+02 Score=22.13 Aligned_cols=78 Identities=17% Similarity=0.364 Sum_probs=43.1
Q ss_pred HHHHhHhhHHHHHHHHhccCc---cHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHhhhhccCCCcchh
Q 020811 12 MVFGYAYPAYECYKTVEKNKP---EIEQLRFWCQYWILVAVLTVCERVGDAFISWVPMYSEAKLAFFVYLWYPKTKGTTY 88 (321)
Q Consensus 12 llIG~lYPAY~SyKALe~~~p---d~e~l~~WL~YWIVyalftv~E~~~d~~l~WIPfY~e~KLlFlIWL~lP~t~GA~y 88 (321)
.++|++|=.|..++-..+.++ -.+| +.||++.+++...--+. -=|.+++.-+++.+.. .-.
T Consensus 17 ~~lG~~yD~yr~~r~~~~~~~~~~~ieD----ilFWi~~~~~vF~~L~~-------~N~G~lR~Y~~lg~~~-----G~~ 80 (130)
T TIGR02893 17 IILGALFDTYRRFRKRQRLNKILVFIED----ILFWIVQALIVFYFLLY-------VNEGEIRFYVFLALLC-----GLA 80 (130)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHH----HHHHHHHHHHHHHHHHH-------hccchhhHHHHHHHHH-----HHH
Confidence 456666666655554433211 0123 67888887776543322 1244555555555543 236
Q ss_pred hhccccchhhhhchHHH
Q 020811 89 VYDSFFRPYVARHENEI 105 (321)
Q Consensus 89 IY~~fI~P~L~k~E~eI 105 (321)
+|..++++++.+-...|
T Consensus 81 lY~~lls~~~~~~l~~i 97 (130)
T TIGR02893 81 IYQALLSKYYVRILEKV 97 (130)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 78888888887754333
Done!