Query 020811
Match_columns 321
No_of_seqs 204 out of 701
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 08:32:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020811.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020811hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iot_A Maltose-binding protein 52.3 17 0.00058 34.1 5.2 6 37-42 276-281 (449)
2 4gc0_A D-xylose-proton symport 34.6 55 0.0019 29.9 5.6 14 73-86 456-469 (491)
3 4aw6_A CAAX prenyl protease 1 19.7 2E+02 0.0068 28.7 6.8 19 86-104 211-229 (482)
4 1kf6_D Fumarate reductase 13 k 16.6 65 0.0022 26.8 2.1 20 1-20 23-42 (119)
5 1iie_A Protein (HLA-DR antigen 15.8 88 0.003 24.1 2.5 28 22-49 31-60 (75)
6 1wgn_A UBAP1, ubiquitin associ 13.9 2.5E+02 0.0086 20.9 4.4 34 8-41 21-54 (63)
7 2qm4_A Non-homologous END-join 13.8 24 0.00081 32.3 -1.4 46 64-118 117-165 (235)
8 3trt_A Vimentin; cytoskeleton, 12.0 3.3E+02 0.011 19.7 4.7 40 103-142 5-44 (77)
9 2kwt_A Protease NS2-3; NS2 dom 11.7 84 0.0029 20.8 1.1 22 37-66 7-28 (33)
10 2ou1_A Apolipoprotein A-II; hi 11.7 1.9E+02 0.0066 22.2 3.3 23 116-138 7-29 (77)
No 1
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=52.26 E-value=17 Score=34.10 Aligned_cols=6 Identities=0% Similarity=0.080 Sum_probs=2.5
Q ss_pred HHHHHH
Q 020811 37 LRFWCQ 42 (321)
Q Consensus 37 l~~WL~ 42 (321)
...||.
T Consensus 276 A~~fl~ 281 (449)
T 3iot_A 276 AKEFLE 281 (449)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 334443
No 2
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=34.57 E-value=55 Score=29.90 Aligned_cols=14 Identities=43% Similarity=0.921 Sum_probs=11.0
Q ss_pred HHHhhhhccCCCcc
Q 020811 73 AFFVYLWYPKTKGT 86 (321)
Q Consensus 73 lFlIWL~lP~t~GA 86 (321)
++++|+++|.|+|=
T Consensus 456 ~i~~~~~~PETkg~ 469 (491)
T 4gc0_A 456 ALFMWKFVPETKGK 469 (491)
T ss_dssp HHHHHHHCCCCTTC
T ss_pred HHHHHheecCCCCC
Confidence 44578899999984
No 3
>4aw6_A CAAX prenyl protease 1 homolog; hydrolase, M48 peptidase, integral membrane protein, prelami processing, ageing, progeria; HET: PC1; 3.40A {Homo sapiens} PDB: 2ypt_A
Probab=19.67 E-value=2e+02 Score=28.65 Aligned_cols=19 Identities=11% Similarity=0.345 Sum_probs=14.5
Q ss_pred chhhhccccchhhhhchHH
Q 020811 86 TTYVYDSFFRPYVARHENE 104 (321)
Q Consensus 86 A~yIY~~fI~P~L~k~E~e 104 (321)
..+||-.+|.|++.++++-
T Consensus 211 ~~~iyP~~I~PLfnk~~Pl 229 (482)
T 4aw6_A 211 LVTIYADYIAPLFDKFTPL 229 (482)
T ss_dssp HHHHHHHHTHHHHSCEEEC
T ss_pred HHHHHHHHHHHHcCCCccC
Confidence 3468888999999886543
No 4
>1kf6_D Fumarate reductase 13 kDa hydrophobic protein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: f.21.2.2 PDB: 1kfy_D* 1l0v_D* 2b76_D* 3cir_D* 3p4p_D* 3p4q_D* 3p4r_D* 3p4s_D*
Probab=16.61 E-value=65 Score=26.85 Aligned_cols=20 Identities=15% Similarity=0.433 Sum_probs=15.9
Q ss_pred ChhhhHHHHHHHHHHhHhhH
Q 020811 1 MIGSFLTRGLVMVFGYAYPA 20 (321)
Q Consensus 1 Mvgsfl~rlL~llIG~lYPA 20 (321)
|++.++...+++++|++.|.
T Consensus 23 m~sAl~~PvliLl~GillPl 42 (119)
T 1kf6_D 23 MWSAIIAPVMILLVGILLPL 42 (119)
T ss_dssp HHHHHTHHHHHHHHHTTGGG
T ss_pred HHHHHHHHHHHHHHHHHhcc
Confidence 56677888888899999884
No 5
>1iie_A Protein (HLA-DR antigens associated invariant chain); major histocompatibility complex, antigen processing, oligomerization, chaperonin; NMR {Homo sapiens} SCOP: a.109.1.1
Probab=15.83 E-value=88 Score=24.13 Aligned_cols=28 Identities=14% Similarity=0.498 Sum_probs=17.8
Q ss_pred HHHHHHhccCc--cHHHHHHHHHHHHHHHH
Q 020811 22 ECYKTVEKNKP--EIEQLRFWCQYWILVAV 49 (321)
Q Consensus 22 ~SyKALe~~~p--d~e~l~~WL~YWIVyal 49 (321)
+-++.|++.-. |=.....|+.||.+|-+
T Consensus 31 ~NLk~LK~~m~~~dWk~FEsWM~~WLLFeM 60 (75)
T 1iie_A 31 ENLRHLKNTMETIDWKVFESWMHHWLLFEM 60 (75)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcChhhHHhHHHHHHHHHHHHH
Confidence 34566665421 22357899999999754
No 6
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=13.91 E-value=2.5e+02 Score=20.94 Aligned_cols=34 Identities=18% Similarity=0.215 Sum_probs=26.6
Q ss_pred HHHHHHHHhHhhHHHHHHHHhccCccHHHHHHHH
Q 020811 8 RGLVMVFGYAYPAYECYKTVEKNKPEIEQLRFWC 41 (321)
Q Consensus 8 rlL~llIG~lYPAY~SyKALe~~~pd~e~l~~WL 41 (321)
..|-++++..|.-....|||+....+.+....||
T Consensus 21 e~V~~LvsMGFs~~qA~kALKat~~NvErAaDWL 54 (63)
T 1wgn_A 21 QCVETVVNMGYSYECVLRAMKKKGENIEQILDYL 54 (63)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHCSCHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 4567788888999999999997665666666665
No 7
>2qm4_A Non-homologous END-joining factor 1; XRCC4 like factor, homodimer, beta-sandwich, coiled-coil, recombination; HET: MSE; 2.30A {Homo sapiens} PDB: 3sr2_C* 2r9a_A 3q4f_E* 3rwr_D*
Probab=13.81 E-value=24 Score=32.27 Aligned_cols=46 Identities=13% Similarity=0.228 Sum_probs=33.0
Q ss_pred cchhHHHHHHHHhhhhccCCCcchhhhccccchhhhh---chHHHHHHHHHHHHHHHh
Q 020811 64 VPMYSEAKLAFFVYLWYPKTKGTTYVYDSFFRPYVAR---HENEIDQNLLELRTRAGD 118 (321)
Q Consensus 64 IPfY~e~KLlFlIWL~lP~t~GA~yIY~~fI~P~L~k---~E~eID~~L~~lr~ra~d 118 (321)
+||||.+.|- -.....+|+.+|.|++.. .+..++..++.++.|-.+
T Consensus 117 lPlkW~fhL~---------~~~~s~l~~~LilPLl~~~~~l~~q~~~L~~lL~~KD~e 165 (235)
T 2qm4_A 117 LPFYWNFHCM---------LASPSLVSQHLIRPLMGMSLALQCQVRELATLLHMKDLE 165 (235)
T ss_dssp EEEEEEEEEE---------ECCHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEEe---------eCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5888776543 225668999999999975 456788888888766544
No 8
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=11.99 E-value=3.3e+02 Score=19.73 Aligned_cols=40 Identities=8% Similarity=0.162 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 020811 103 NEIDQNLLELRTRAGDMATIYWQKVASYGQTRVFEILQFI 142 (321)
Q Consensus 103 ~eID~~L~~lr~ra~d~a~~y~q~a~~~gQ~~~~e~Lq~~ 142 (321)
.+++..|.++|..=.+++......+-.+-+.++-++-..+
T Consensus 5 ~DL~~il~eiRaQYE~ia~knr~EaE~~y~~k~eel~~~~ 44 (77)
T 3trt_A 5 PDCTAAMRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAA 44 (77)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3567788888877777777777777777777766654443
No 9
>2kwt_A Protease NS2-3; NS2 domain, membrane protein, viral prote; NMR {Hepatitis c virus}
Probab=11.75 E-value=84 Score=20.76 Aligned_cols=22 Identities=36% Similarity=0.845 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccch
Q 020811 37 LRFWCQYWILVAVLTVCERVGDAFISWVPM 66 (321)
Q Consensus 37 l~~WL~YWIVyalftv~E~~~d~~l~WIPf 66 (321)
+.-|++|||+- +|.. +--|+|.
T Consensus 7 ~lWWlqYfi~R-----~EA~---l~vWvPp 28 (33)
T 2kwt_A 7 LIWWLQYFITR-----AEAH---LQVWIPP 28 (33)
T ss_dssp THHHHHHHHHH-----HHHH---HTTSCCT
T ss_pred HHHHHHHHHHH-----HHHH---HHhhCCC
Confidence 35688887753 4443 2457764
No 10
>2ou1_A Apolipoprotein A-II; high density lipoproteins, helix, cholesterol metabolism X-RAY diffraction, lipid binding protein; 2.00A {Homo sapiens} PDB: 1l6l_A
Probab=11.74 E-value=1.9e+02 Score=22.18 Aligned_cols=23 Identities=22% Similarity=0.533 Sum_probs=0.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHH
Q 020811 116 AGDMATIYWQKVASYGQTRVFEI 138 (321)
Q Consensus 116 a~d~a~~y~q~a~~~gQ~~~~e~ 138 (321)
+..++..|||.+.+||++.+..+
T Consensus 7 ~Qsl~SqYfQt~TdyGKDL~EKa 29 (77)
T 2ou1_A 7 VESLVSQYFQTVTDYGKDLMEKV 29 (77)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHc
Done!