Query 020811
Match_columns 321
No_of_seqs 204 out of 701
Neff 4.3
Searched_HMMs 13730
Date Mon Mar 25 08:32:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020811.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/020811hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74g1 f.23.26.1 (G:9-35) Pet 24.8 20 0.0014 21.0 2.0 20 6-25 3-22 (27)
2 d2fyuk1 f.23.15.1 (K:1-53) Sub 20.9 28 0.002 23.6 2.4 31 37-68 14-49 (53)
3 d1iiea_ a.109.1.1 (A:) Class I 20.1 25 0.0018 25.4 2.1 28 22-49 31-60 (75)
4 d1dlca3 f.1.3.1 (A:61-289) del 19.3 2.2E+02 0.016 23.0 9.5 25 4-28 26-50 (229)
5 d1m56d_ f.23.8.1 (D:) Bacteria 15.2 54 0.0039 21.1 2.7 26 54-79 13-38 (42)
6 d1qled_ f.23.8.1 (D:) Bacteria 14.9 55 0.004 21.2 2.7 27 53-79 13-39 (43)
7 d1gpea2 d.16.1.1 (A:329-524) G 14.9 23 0.0017 28.5 1.0 42 72-113 97-145 (196)
8 d1vpua_ g.34.1.1 (A:) HIV-1 VP 11.5 44 0.0032 21.8 1.4 17 104-120 2-18 (45)
9 d1nekd_ f.21.2.2 (D:) Succinat 9.4 17 0.0012 27.1 -1.6 15 82-96 70-84 (113)
10 d2d4ra1 d.129.3.6 (A:2-147) Hy 9.4 59 0.0043 23.1 1.6 16 76-91 89-104 (146)
No 1
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=24.80 E-value=20 Score=21.00 Aligned_cols=20 Identities=35% Similarity=0.474 Sum_probs=15.1
Q ss_pred HHHHHHHHHHhHhhHHHHHH
Q 020811 6 LTRGLVMVFGYAYPAYECYK 25 (321)
Q Consensus 6 l~rlL~llIG~lYPAY~SyK 25 (321)
+.-++..+.|..|-||.-||
T Consensus 3 lgli~~tl~glf~aayqqyk 22 (27)
T d2e74g1 3 LGLVFATLGGLFYAAYQQYK 22 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHTT
T ss_pred eeehHHHHHHHHHHHHHHhc
Confidence 34456677889999998876
No 2
>d2fyuk1 f.23.15.1 (K:1-53) Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=20.94 E-value=28 Score=23.61 Aligned_cols=31 Identities=26% Similarity=0.627 Sum_probs=19.1
Q ss_pred HHHH---HHHHHHHHHHHHHHHHHHH--HhcccchhH
Q 020811 37 LRFW---CQYWILVAVLTVCERVGDA--FISWVPMYS 68 (321)
Q Consensus 37 l~~W---L~YWIVyalftv~E~~~d~--~l~WIPfY~ 68 (321)
.+.| +.+|-..+.+.++ ++.|+ ++.|+|+|.
T Consensus 14 a~~wips~~~~G~a~gl~lv-y~TDWklil~yvPyy~ 49 (53)
T d2fyuk1 14 ARNWVPTASLWGAVGAVGLV-WATDWRLILDWVPYIN 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHHTCHHHHTSSSSCC
T ss_pred HHHHhhhhhhhhhhhheeee-eeehHHHHHhhhhhhc
Confidence 3455 4556555555544 45664 789999984
No 3
>d1iiea_ a.109.1.1 (A:) Class II MHC-associated invariant chain ectoplasmic trimerization domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.13 E-value=25 Score=25.39 Aligned_cols=28 Identities=14% Similarity=0.498 Sum_probs=17.7
Q ss_pred HHHHHHhccCc--cHHHHHHHHHHHHHHHH
Q 020811 22 ECYKTVEKNKP--EIEQLRFWCQYWILVAV 49 (321)
Q Consensus 22 ~SyKALe~~~p--d~e~l~~WL~YWIVyal 49 (321)
+-++.|++.-. |=.....|+.||.+|-+
T Consensus 31 ~NLk~LK~~M~~~dWk~FEsWM~~WLlFeM 60 (75)
T d1iiea_ 31 ENLRHLKNTMETIDWKVFESWMHHWLLFEM 60 (75)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcchhhHHHHHHHHHHHHHHHH
Confidence 34566665321 22457899999999754
No 4
>d1dlca3 f.1.3.1 (A:61-289) delta-Endotoxin (insectocide), N-terminal domain {Bacillus thuringiensis tenebrionis, CRYIIIA (BT13) [TaxId: 1444]}
Probab=19.34 E-value=2.2e+02 Score=22.96 Aligned_cols=25 Identities=12% Similarity=0.135 Sum_probs=18.4
Q ss_pred hhHHHHHHHHHHhHhhHHHHHHHHh
Q 020811 4 SFLTRGLVMVFGYAYPAYECYKTVE 28 (321)
Q Consensus 4 sfl~rlL~llIG~lYPAY~SyKALe 28 (321)
+.+..+++.++|+++|.-..++.+.
T Consensus 26 g~~~~~~~~i~~~lwP~~~~w~~~~ 50 (229)
T d1dlca3 26 GALVSFYTNFLNTIWPSEDPWKAFM 50 (229)
T ss_dssp HHHHHHHHHHHHHTSSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCcHHHHHH
Confidence 4455678889999999876666654
No 5
>d1m56d_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=15.23 E-value=54 Score=21.12 Aligned_cols=26 Identities=19% Similarity=0.261 Sum_probs=14.5
Q ss_pred HHHHHHHhcccchhHHHHHHHHhhhh
Q 020811 54 ERVGDAFISWVPMYSEAKLAFFVYLW 79 (321)
Q Consensus 54 E~~~d~~l~WIPfY~e~KLlFlIWL~ 79 (321)
|.-++.|+.|.-....+-++++++|.
T Consensus 13 EKTF~gFik~~t~~~i~~i~~liflA 38 (42)
T d1m56d_ 13 EKTFAGFVRMVTWAAVVIVAALIFLA 38 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555556666654
No 6
>d1qled_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Paracoccus denitrificans [TaxId: 266]}
Probab=14.88 E-value=55 Score=21.16 Aligned_cols=27 Identities=22% Similarity=0.169 Sum_probs=15.4
Q ss_pred HHHHHHHHhcccchhHHHHHHHHhhhh
Q 020811 53 CERVGDAFISWVPMYSEAKLAFFVYLW 79 (321)
Q Consensus 53 ~E~~~d~~l~WIPfY~e~KLlFlIWL~ 79 (321)
-|.-++.|+.|.-....+-++++++|.
T Consensus 13 QEkTF~gFi~~~t~~~i~~i~~liflA 39 (43)
T d1qled_ 13 QQATFAGFIKGATWVSILSIAVLVFLA 39 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566665555555566666654
No 7
>d1gpea2 d.16.1.1 (A:329-524) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}
Probab=14.86 E-value=23 Score=28.46 Aligned_cols=42 Identities=17% Similarity=0.173 Sum_probs=30.9
Q ss_pred HHHHhhhhccCCCcchhh-----hc--cccchhhhhchHHHHHHHHHHH
Q 020811 72 LAFFVYLWYPKTKGTTYV-----YD--SFFRPYVARHENEIDQNLLELR 113 (321)
Q Consensus 72 LlFlIWL~lP~t~GA~yI-----Y~--~fI~P~L~k~E~eID~~L~~lr 113 (321)
+.+.+|+++|..+|...| ++ -.|.|-+..|+.+++..+.-+|
T Consensus 97 ~~~~~~~l~P~SrG~V~l~S~dP~~~pp~I~pnyl~~~~D~~~~~~~~r 145 (196)
T d1gpea2 97 INFDLWDLIPFTRGSVHILSSDPYLWQFANDPKFFLNEFDLLGQAAASK 145 (196)
T ss_dssp EEEEEEESSCCCCBEEEESSSCGGGTCEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEeeeccCCccceEEEeeCCCchhcccccchhhcCCchHHHHHHHHHH
Confidence 567889999999999877 33 2566666677777777766554
No 8
>d1vpua_ g.34.1.1 (A:) HIV-1 VPU cytoplasmic domain {Human immunodeficiency virus type 1 [TaxId: 11676]}
Probab=11.53 E-value=44 Score=21.82 Aligned_cols=17 Identities=29% Similarity=0.407 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHhHH
Q 020811 104 EIDQNLLELRTRAGDMA 120 (321)
Q Consensus 104 eID~~L~~lr~ra~d~a 120 (321)
.||++|..+|+|+.|-+
T Consensus 2 kIdrLi~RIrERAEDSG 18 (45)
T d1vpua_ 2 QIDRLIDRITERAEDSG 18 (45)
T ss_dssp CHHHHHHHHHHTTCHHH
T ss_pred cHHHHHHHHHHHcccCC
Confidence 49999999999997754
No 9
>d1nekd_ f.21.2.2 (D:) Succinate dehydrogenase subunit SdhD {Escherichia coli [TaxId: 562]}
Probab=9.37 E-value=17 Score=27.12 Aligned_cols=15 Identities=20% Similarity=0.317 Sum_probs=9.9
Q ss_pred CCCcchhhhccccch
Q 020811 82 KTKGTTYVYDSFFRP 96 (321)
Q Consensus 82 ~t~GA~yIY~~fI~P 96 (321)
..-|-..|-+.|+++
T Consensus 70 ~~lGl~~IieDYi~~ 84 (113)
T d1nekd_ 70 AWIGMWQVLTDYVKP 84 (113)
T ss_dssp HHHHHHHHHHHHCCS
T ss_pred HHHhHhhhHHHhcCC
Confidence 334777777777765
No 10
>d2d4ra1 d.129.3.6 (A:2-147) Hypothetical protein TTHA0849 {Thermus thermophilus [TaxId: 274]}
Probab=9.36 E-value=59 Score=23.08 Aligned_cols=16 Identities=25% Similarity=0.617 Sum_probs=11.2
Q ss_pred hhhhccCCCcchhhhc
Q 020811 76 VYLWYPKTKGTTYVYD 91 (321)
Q Consensus 76 IWL~lP~t~GA~yIY~ 91 (321)
.|.+.|...|+...|.
T Consensus 89 ~w~l~~~~~gT~v~~~ 104 (146)
T d2d4ra1 89 TWVFLPEGEGTRVVLT 104 (146)
T ss_dssp EEEEEECSSSEEEEEE
T ss_pred EEEEEecCCceEEEEE
Confidence 5677777778766654
Done!